Citrus Sinensis ID: 024016
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 274 | 2.2.26 [Sep-21-2011] | |||||||
| P17817 | 274 | Pyrroline-5-carboxylate r | yes | no | 1.0 | 1.0 | 0.781 | 1e-122 | |
| Q04708 | 273 | Pyrroline-5-carboxylate r | N/A | no | 0.996 | 1.0 | 0.784 | 1e-121 | |
| P54904 | 276 | Pyrroline-5-carboxylate r | yes | no | 1.0 | 0.992 | 0.770 | 1e-120 | |
| O04016 | 278 | Pyrroline-5-carboxylate r | N/A | no | 0.978 | 0.964 | 0.791 | 1e-120 | |
| Q9HH99 | 270 | Pyrroline-5-carboxylate r | yes | no | 0.967 | 0.981 | 0.447 | 2e-58 | |
| Q5R9X6 | 319 | Pyrroline-5-carboxylate r | yes | no | 0.952 | 0.818 | 0.466 | 5e-58 | |
| P32322 | 319 | Pyrroline-5-carboxylate r | no | no | 0.952 | 0.818 | 0.466 | 5e-58 | |
| Q96C36 | 320 | Pyrroline-5-carboxylate r | no | no | 0.952 | 0.815 | 0.451 | 2e-57 | |
| Q17QJ7 | 320 | Pyrroline-5-carboxylate r | yes | no | 0.952 | 0.815 | 0.451 | 6e-57 | |
| Q5RAQ3 | 320 | Pyrroline-5-carboxylate r | no | no | 0.952 | 0.815 | 0.451 | 7e-57 |
| >sp|P17817|P5CR_SOYBN Pyrroline-5-carboxylate reductase OS=Glycine max PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 438 bits (1126), Expect = e-122, Method: Compositional matrix adjust.
Identities = 214/274 (78%), Positives = 241/274 (87%)
Query: 1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60
M+ FPIPAES+ LGFIGAGKMAESIA+G +SGVLPP RI TAVH NL RR AFES GV
Sbjct: 1 MEIFPIPAESYTLGFIGAGKMAESIARGAVRSGVLPPSRIRTAVHFNLARRGAFESFGVT 60
Query: 61 VLSDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHS 120
VL N+ VV SDVVV SVKPQ+VKDV ++ PLL++ KLLVSVAAG KLKDLQEW G+
Sbjct: 61 VLPSNDDVVRESDVVVLSVKPQLVKDVVSKLTPLLTKHKLLVSVAAGTKLKDLQEWAGND 120
Query: 121 RFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSG 180
RFIRVMPNTP+AVG+AA+VMSLGG+ATEEDG +I +LFGS+GKIW+A+EK FDAITGLSG
Sbjct: 121 RFIRVMPNTPAAVGQAASVMSLGGSATEEDGNIIAQLFGSIGKIWKAEEKYFDAITGLSG 180
Query: 181 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPG 240
SGPAY++LAIEALADGGVAAGLPR+L+L LASQTVLGAASMV+++GKHPGQLKDDV SPG
Sbjct: 181 SGPAYVYLAIEALADGGVAAGLPRDLSLSLASQTVLGAASMVSQTGKHPGQLKDDVTSPG 240
Query: 241 GTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 274
GTTI GIHELE GFRG LMNAVVAAAKRSRELS
Sbjct: 241 GTTITGIHELENGGFRGTLMNAVVAAAKRSRELS 274
|
Glycine max (taxid: 3847) EC: 1EC: .EC: 5EC: .EC: 1EC: .EC: 2 |
| >sp|Q04708|P5CR_PEA Pyrroline-5-carboxylate reductase OS=Pisum sativum GN=PROC PE=2 SV=1 | Back alignment and function description |
|---|
Score = 435 bits (1119), Expect = e-121, Method: Compositional matrix adjust.
Identities = 215/274 (78%), Positives = 242/274 (88%), Gaps = 1/274 (0%)
Query: 1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60
M+ PI ++S+ LGFIGAGKMAESIAKG ++SGVLP RI TA HSN RR AFESIG+
Sbjct: 1 MEILPILSDSYTLGFIGAGKMAESIAKGASRSGVLPSSRIVTA-HSNPSRRAAFESIGIT 59
Query: 61 VLSDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHS 120
VLS N+ VV S+VVVFSVKPQ+VKDV ++++PLL++ KLLVSVAAG+KLKDLQEW GH
Sbjct: 60 VLSSNDDVVRASNVVVFSVKPQLVKDVVLKLKPLLTKDKLLVSVAAGIKLKDLQEWAGHE 119
Query: 121 RFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSG 180
RFIRVMPNTP+AVG+AA+VMSLGG ATEED LI +LFGS+GKIW+AD+K FDAITGLSG
Sbjct: 120 RFIRVMPNTPAAVGQAASVMSLGGAATEEDANLISQLFGSIGKIWKADDKFFDAITGLSG 179
Query: 181 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPG 240
SGPAYI+LAIEALADGGVAAGLPR+LAL LASQTVLGAASM T SGKHPGQLKDDV SPG
Sbjct: 180 SGPAYIYLAIEALADGGVAAGLPRDLALSLASQTVLGAASMATLSGKHPGQLKDDVTSPG 239
Query: 241 GTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 274
GTTIAG+HELEK GFRG LMNAVVAAAKRSRELS
Sbjct: 240 GTTIAGVHELEKGGFRGTLMNAVVAAAKRSRELS 273
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Pisum sativum (taxid: 3888) EC: 1 EC: . EC: 5 EC: . EC: 1 EC: . EC: 2 |
| >sp|P54904|P5CR1_ARATH Pyrroline-5-carboxylate reductase OS=Arabidopsis thaliana GN=PROC1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 431 bits (1109), Expect = e-120, Method: Compositional matrix adjust.
Identities = 211/274 (77%), Positives = 237/274 (86%)
Query: 1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60
M+ PIPAESF +GFIGAGKMAESIA+GV SGVLPP+RICTAVHSNL RRD FES GV
Sbjct: 1 MEILPIPAESFKVGFIGAGKMAESIARGVVASGVLPPNRICTAVHSNLNRRDVFESFGVN 60
Query: 61 VLSDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHS 120
V S + VV+ SDVV+FSVKPQVVK +++ LS+ K+LVSVAAG+KL DLQEW+G
Sbjct: 61 VFSTSEEVVKESDVVIFSVKPQVVKKAVTELKSKLSKNKILVSVAAGIKLNDLQEWSGQD 120
Query: 121 RFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSG 180
RFIRVMPNTP+AVGEAA+VMSLG ATEEDG ++ LFG+VGKI +ADEK+FDA+TGLSG
Sbjct: 121 RFIRVMPNTPAAVGEAASVMSLGTGATEEDGAIVAMLFGAVGKILKADEKMFDAVTGLSG 180
Query: 181 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPG 240
SGPAYIFLAIEALADGGVAAGLPRELAL LASQTVLGAA+MV+K+GKHPG LKDDV SPG
Sbjct: 181 SGPAYIFLAIEALADGGVAAGLPRELALSLASQTVLGAATMVSKTGKHPGVLKDDVTSPG 240
Query: 241 GTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 274
GTTIAG+HELEK FR LMNAVVAAAKRSRELS
Sbjct: 241 GTTIAGVHELEKGSFRATLMNAVVAAAKRSRELS 274
|
Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 5 EC: . EC: 1 EC: . EC: 2 |
| >sp|O04016|P5CR_ACTCH Pyrroline-5-carboxylate reductase OS=Actinidia chinensis PE=2 SV=1 | Back alignment and function description |
|---|
Score = 430 bits (1105), Expect = e-120, Method: Compositional matrix adjust.
Identities = 213/269 (79%), Positives = 240/269 (89%), Gaps = 1/269 (0%)
Query: 5 PIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSD 64
PIP +++ LGFIGAGKMAESIA+GV KSGVLP RI TA H RR+AFES GVKVL
Sbjct: 8 PIPTDTYKLGFIGAGKMAESIARGVVKSGVLPASRIRTA-HLGSARREAFESFGVKVLDR 66
Query: 65 NNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIR 124
N+ VVE SDV++FSVKPQ+VK+V +Q+RPLLS K+LLVS+ AGVKLK+L++W GHSRFIR
Sbjct: 67 NDQVVEDSDVIIFSVKPQIVKEVVLQLRPLLSEKQLLVSIVAGVKLKELEDWAGHSRFIR 126
Query: 125 VMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPA 184
VMPNTP+AVGEAA+VMSLG TAT EDGELI KLFG++GKIW+ADEKLFDA+TGLSGSGPA
Sbjct: 127 VMPNTPAAVGEAASVMSLGATATGEDGELITKLFGAIGKIWKADEKLFDAVTGLSGSGPA 186
Query: 185 YIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTI 244
YIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMV + GKHPGQLKDDVAS GGTTI
Sbjct: 187 YIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVARGGKHPGQLKDDVASAGGTTI 246
Query: 245 AGIHELEKSGFRGILMNAVVAAAKRSREL 273
AGIHELEK GFRG LMNAVV+A KRS+E+
Sbjct: 247 AGIHELEKGGFRGTLMNAVVSATKRSQEI 275
|
Actinidia chinensis (taxid: 3625) EC: 1 EC: . EC: 5 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q9HH99|P5CR_METAC Pyrroline-5-carboxylate reductase OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=proC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 225 bits (574), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 119/266 (44%), Positives = 176/266 (66%), Gaps = 1/266 (0%)
Query: 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAV 68
E+ +GFIGAGKM ++ +G K+G++ P+ I + +D +G++V +DN +
Sbjct: 2 ENQKIGFIGAGKMGSALMQGTIKAGIVTPENIGASDVYEPFLKDLQAKLGIRVSTDNAVI 61
Query: 69 VEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQE-WTGHSRFIRVMP 127
V SD+++ +VKPQ + V ++ ++ +KL++S+AAGV L ++ +R +RVMP
Sbjct: 62 VRESDILILAVKPQTLSSVLSNLKNEITSEKLVISIAAGVPLSTYEDALLEGTRVVRVMP 121
Query: 128 NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIF 187
N + V EAA+ ++ G AT ED + ++F +VG + E L DA+TGLSGSGPA+IF
Sbjct: 122 NIAATVSEAASGIAPGKNATPEDLKAALEIFSAVGTAVQVPESLMDAVTGLSGSGPAFIF 181
Query: 188 LAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 247
IEA+ADG V G+ R+ AL LA+QTVLGAA M ++G HPG+LKD V SP GTTI GI
Sbjct: 182 PVIEAMADGAVLEGMDRKSALTLAAQTVLGAAKMALETGMHPGELKDMVTSPAGTTIQGI 241
Query: 248 HELEKSGFRGILMNAVVAAAKRSREL 273
H LE++G R MNAV+ A++RS+EL
Sbjct: 242 HSLEEAGIRAAFMNAVIRASERSKEL 267
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Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) (taxid: 188937) EC: 1 EC: . EC: 5 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q5R9X6|P5CR1_PONAB Pyrroline-5-carboxylate reductase 1, mitochondrial OS=Pongo abelii GN=PYCR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 224 bits (571), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 124/266 (46%), Positives = 169/266 (63%), Gaps = 5/266 (1%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAVVEY 71
+GFIGAG++A ++AKG +GVL +I ++ +L A +GVK+ N V++
Sbjct: 3 VGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQH 62
Query: 72 SDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL----KDLQEWTGHSRFIRVMP 127
SDV+ +VKP ++ + +I + + ++VS AAGV + K L + R IR M
Sbjct: 63 SDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMT 122
Query: 128 NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIF 187
NTP V E ATV + G A EDG L+ +L SVG +E L DA+TGLSGSGPAY F
Sbjct: 123 NTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAF 182
Query: 188 LAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 247
A++ALADGGV GLPR LA+ L +Q +LGAA M+ S +HPGQLKD+V+SPGG TI +
Sbjct: 183 TALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGATIHAL 242
Query: 248 HELEKSGFRGILMNAVVAAAKRSREL 273
H LE GFR +L+NAV A+ R+REL
Sbjct: 243 HVLESGGFRSLLINAVEASCIRTREL 268
|
Housekeeping enzyme that catalyzes the last step in proline biosynthesis. Can utilize both NAD and NADP, but has higher affinity for NAD. Involved in the cellular response to oxidative stress. Pongo abelii (taxid: 9601) EC: 1 EC: . EC: 5 EC: . EC: 1 EC: . EC: 2 |
| >sp|P32322|P5CR1_HUMAN Pyrroline-5-carboxylate reductase 1, mitochondrial OS=Homo sapiens GN=PYCR1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 224 bits (571), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 124/266 (46%), Positives = 169/266 (63%), Gaps = 5/266 (1%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAVVEY 71
+GFIGAG++A ++AKG +GVL +I ++ +L A +GVK+ N V++
Sbjct: 3 VGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQH 62
Query: 72 SDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL----KDLQEWTGHSRFIRVMP 127
SDV+ +VKP ++ + +I + + ++VS AAGV + K L + R IR M
Sbjct: 63 SDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMT 122
Query: 128 NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIF 187
NTP V E ATV + G A EDG L+ +L SVG +E L DA+TGLSGSGPAY F
Sbjct: 123 NTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAF 182
Query: 188 LAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 247
A++ALADGGV GLPR LA+ L +Q +LGAA M+ S +HPGQLKD+V+SPGG TI +
Sbjct: 183 TALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGATIHAL 242
Query: 248 HELEKSGFRGILMNAVVAAAKRSREL 273
H LE GFR +L+NAV A+ R+REL
Sbjct: 243 HVLESGGFRSLLINAVEASCIRTREL 268
|
Housekeeping enzyme that catalyzes the last step in proline biosynthesis. Can utilize both NAD and NADP, but has higher affinity for NAD. Involved in the cellular response to oxidative stress. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 5 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q96C36|P5CR2_HUMAN Pyrroline-5-carboxylate reductase 2 OS=Homo sapiens GN=PYCR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 222 bits (566), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 120/266 (45%), Positives = 168/266 (63%), Gaps = 5/266 (1%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAVVEY 71
+GFIGAG++A ++A+G +G+L +I ++ NL A +GV + N V++
Sbjct: 3 VGFIGAGQLAYALARGFTAAGILSAHKIIASSPEMNLPTVSALRKMGVNLTRSNKETVKH 62
Query: 72 SDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL----KDLQEWTGHSRFIRVMP 127
SDV+ +VKP ++ + +I + + ++VS AAGV + K L + + IR M
Sbjct: 63 SDVLFLAVKPHIIPFILDEIGADVQARHIVVSCAAGVTISSVEKKLMAFQPAPKVIRCMT 122
Query: 128 NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIF 187
NTP V E ATV + G A EDG+L+ +L SVG +E L DA+TGLSGSGPAY F
Sbjct: 123 NTPVVVQEGATVYATGTHALVEDGQLLEQLMSSVGFCTEVEEDLIDAVTGLSGSGPAYAF 182
Query: 188 LAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 247
+A++ALADGGV GLPR LA+ L +Q +LGAA M+ S +HP QLKD+V SPGG TI +
Sbjct: 183 MALDALADGGVKMGLPRRLAIQLGAQALLGAAKMLLDSEQHPCQLKDNVCSPGGATIHAL 242
Query: 248 HELEKSGFRGILMNAVVAAAKRSREL 273
H LE GFR +L+NAV A+ R+REL
Sbjct: 243 HFLESGGFRSLLINAVEASCIRTREL 268
|
Housekeeping enzyme that catalyzes the last step in proline biosynthesis. In some cell types, such as erythrocytes, its primary function may be the generation of NADP(+). Can utilize both NAD and NADP. Has higher affinity for NADP, but higher catalytic efficiency with NADH. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 5 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q17QJ7|P5CR2_BOVIN Pyrroline-5-carboxylate reductase 2 OS=Bos taurus GN=PYCR2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 221 bits (562), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 120/266 (45%), Positives = 168/266 (63%), Gaps = 5/266 (1%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAVVEY 71
+GFIGAG++A ++A+G +G+L +I ++ +L A +GV + N V +
Sbjct: 3 VGFIGAGQLACALARGFTAAGILSAHKIIASSPEMDLPTVSALRKMGVNLTRSNKETVRH 62
Query: 72 SDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL----KDLQEWTGHSRFIRVMP 127
SDV+ +VKP ++ + +I + + ++VS AAGV + K L + + IR M
Sbjct: 63 SDVLFLAVKPHIIPFILDEIGADVQARHIVVSCAAGVTISSVEKKLMAFQPAPKVIRCMT 122
Query: 128 NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIF 187
NTP V E ATV + G A EDG+L+ +L SVG +E L DA+TGLSGSGPAY F
Sbjct: 123 NTPVLVREGATVYATGTHALVEDGQLLEQLMSSVGFCTEVEEDLIDAVTGLSGSGPAYAF 182
Query: 188 LAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 247
+A++ALADGGV GLPR LA+ L +Q +LGAA M+ S +HPGQLKD+V SPGG TI +
Sbjct: 183 MALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLDSEQHPGQLKDNVCSPGGATIHAL 242
Query: 248 HELEKSGFRGILMNAVVAAAKRSREL 273
H LE GFR +L+NAV A+ R+REL
Sbjct: 243 HFLESGGFRSLLINAVEASCIRTREL 268
|
Housekeeping enzyme that catalyzes the last step in proline biosynthesis. In some cell types, such as erythrocytes, its primary function may be the generation of NADP(+). Can utilize both NAD and NADP. Has higher affinity for NADP, but higher catalytic efficiency with NADH. Bos taurus (taxid: 9913) EC: 1 EC: . EC: 5 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q5RAQ3|P5CR2_PONAB Pyrroline-5-carboxylate reductase 2 OS=Pongo abelii GN=PYCR2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 220 bits (561), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 120/266 (45%), Positives = 167/266 (62%), Gaps = 5/266 (1%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAVVEY 71
+GFIGAG++A ++A+G +G+L +I ++ NL A +GV + N V++
Sbjct: 3 VGFIGAGQLAYALARGFTAAGILSAHKIIASSPEMNLPTVSALRKMGVNLTRSNKETVKH 62
Query: 72 SDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL----KDLQEWTGHSRFIRVMP 127
SDV+ +VKP ++ + +I + ++VS AAGV + K L + + IR M
Sbjct: 63 SDVLFLAVKPHIIPFILDEIGADVQAGHIVVSCAAGVTISSVEKKLMAFQPAPKVIRCMT 122
Query: 128 NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIF 187
NTP V E ATV + G A EDG+L+ +L SVG +E L DA+TGLSGSGPAY F
Sbjct: 123 NTPVVVQEGATVYATGTHALVEDGQLLEQLMSSVGFCTEVEEDLIDAVTGLSGSGPAYAF 182
Query: 188 LAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 247
+A++ALADGGV GLPR LA+ L +Q +LGAA M+ S +HP QLKD+V SPGG TI +
Sbjct: 183 MALDALADGGVKMGLPRRLAIQLGAQALLGAAKMLLDSEQHPCQLKDNVCSPGGATIHAL 242
Query: 248 HELEKSGFRGILMNAVVAAAKRSREL 273
H LE GFR +L+NAV A+ R+REL
Sbjct: 243 HFLESGGFRSLLINAVEASCIRTREL 268
|
Housekeeping enzyme that catalyzes the last step in proline biosynthesis. In some cell types, such as erythrocytes, its primary function may be the generation of NADP(+). Can utilize both NAD and NADP. Has higher affinity for NADP, but higher catalytic efficiency with NADH. Pongo abelii (taxid: 9601) EC: 1 EC: . EC: 5 EC: . EC: 1 EC: . EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 274 | ||||||
| 224086867 | 279 | predicted protein [Populus trichocarpa] | 0.981 | 0.964 | 0.817 | 1e-123 | |
| 357509475 | 274 | Pyrroline-5-carboxylate reductase [Medic | 1.0 | 1.0 | 0.781 | 1e-121 | |
| 351720961 | 274 | pyrroline-5-carboxylate reductase [Glyci | 1.0 | 1.0 | 0.781 | 1e-120 | |
| 296882319 | 276 | pyrroline-5-carboxylate reductase [Arabi | 1.0 | 0.992 | 0.784 | 1e-120 | |
| 449449789 | 276 | PREDICTED: pyrroline-5-carboxylate reduc | 1.0 | 0.992 | 0.788 | 1e-120 | |
| 417540 | 273 | RecName: Full=Pyrroline-5-carboxylate re | 0.996 | 1.0 | 0.784 | 1e-120 | |
| 13161407 | 274 | VuP5CR [Vigna unguiculata] | 1.0 | 1.0 | 0.777 | 1e-119 | |
| 356504710 | 274 | PREDICTED: pyrroline-5-carboxylate reduc | 1.0 | 1.0 | 0.773 | 1e-119 | |
| 15241505 | 276 | Pyrroline-5-carboxylate reductase [Arabi | 1.0 | 0.992 | 0.770 | 1e-118 | |
| 312283283 | 276 | unnamed protein product [Thellungiella h | 1.0 | 0.992 | 0.781 | 1e-118 |
| >gi|224086867|ref|XP_002307988.1| predicted protein [Populus trichocarpa] gi|222853964|gb|EEE91511.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/269 (81%), Positives = 242/269 (89%)
Query: 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDN 65
I E++ LGFIGAGKMAESIAKG +SG LPP RI T++HSN RR AF+S+GVKVL N
Sbjct: 9 IQTETYKLGFIGAGKMAESIAKGAVQSGFLPPPRISTSIHSNPARRLAFDSLGVKVLPQN 68
Query: 66 NAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRV 125
VVE SDVV+FSVKPQVV+DV +++RPLL++ KLLVS+AAG KLKDLQEW GHSRFIRV
Sbjct: 69 RNVVEESDVVIFSVKPQVVRDVVLELRPLLTKDKLLVSIAAGTKLKDLQEWAGHSRFIRV 128
Query: 126 MPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAY 185
+PNTPSAVGEAA+VM LGG ATEEDGEL+ KLFGSVGKIWRADEKLFDAI GLSGSGPAY
Sbjct: 129 VPNTPSAVGEAASVMCLGGAATEEDGELVAKLFGSVGKIWRADEKLFDAIVGLSGSGPAY 188
Query: 186 IFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIA 245
I+LAIEALADGGVAAGLPRELA+GLASQTVLGAASM +K+GKHPGQLKDDVASPGGTTIA
Sbjct: 189 IYLAIEALADGGVAAGLPRELAMGLASQTVLGAASMASKTGKHPGQLKDDVASPGGTTIA 248
Query: 246 GIHELEKSGFRGILMNAVVAAAKRSRELS 274
GIHELEK GFRG LMNAVVAAAKRSRELS
Sbjct: 249 GIHELEKGGFRGTLMNAVVAAAKRSRELS 277
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357509475|ref|XP_003625026.1| Pyrroline-5-carboxylate reductase [Medicago truncatula] gi|355500041|gb|AES81244.1| Pyrroline-5-carboxylate reductase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 214/274 (78%), Positives = 244/274 (89%)
Query: 1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60
M+ PIPA+S+ LGFIGAGKMAESIAKG +SGVL P RI TA+HSN RR AFESIG+
Sbjct: 1 MEIIPIPADSYTLGFIGAGKMAESIAKGAVRSGVLSPSRIKTAIHSNPARRTAFESIGIT 60
Query: 61 VLSDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHS 120
VLS N+ VV S+VVVFSVKPQ++KDV ++++PLL++ KLLVSVAAG+K+KDLQEW GH
Sbjct: 61 VLSSNDDVVRDSNVVVFSVKPQLLKDVVLKLKPLLTKDKLLVSVAAGIKMKDLQEWAGHE 120
Query: 121 RFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSG 180
RFIRVMPNT + VGEAA+VMSLGG ATEED LI +LFGS+GKIW+AD+K FDAITGLSG
Sbjct: 121 RFIRVMPNTAATVGEAASVMSLGGAATEEDANLISQLFGSIGKIWKADDKYFDAITGLSG 180
Query: 181 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPG 240
SGPAYI+LAIEALADGGVAAGLPR+LAL LASQTVLGAASM T+SGKHPGQLKDDV SPG
Sbjct: 181 SGPAYIYLAIEALADGGVAAGLPRDLALSLASQTVLGAASMATQSGKHPGQLKDDVTSPG 240
Query: 241 GTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 274
GTTIAG+HELEK+GFRGILMNAVVAAAKRS+ELS
Sbjct: 241 GTTIAGVHELEKAGFRGILMNAVVAAAKRSQELS 274
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|351720961|ref|NP_001235914.1| pyrroline-5-carboxylate reductase [Glycine max] gi|130972|sp|P17817.1|P5CR_SOYBN RecName: Full=Pyrroline-5-carboxylate reductase; Short=P5C reductase; Short=P5CR gi|18724|emb|CAA34401.1| unnamed protein product [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 214/274 (78%), Positives = 241/274 (87%)
Query: 1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60
M+ FPIPAES+ LGFIGAGKMAESIA+G +SGVLPP RI TAVH NL RR AFES GV
Sbjct: 1 MEIFPIPAESYTLGFIGAGKMAESIARGAVRSGVLPPSRIRTAVHFNLARRGAFESFGVT 60
Query: 61 VLSDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHS 120
VL N+ VV SDVVV SVKPQ+VKDV ++ PLL++ KLLVSVAAG KLKDLQEW G+
Sbjct: 61 VLPSNDDVVRESDVVVLSVKPQLVKDVVSKLTPLLTKHKLLVSVAAGTKLKDLQEWAGND 120
Query: 121 RFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSG 180
RFIRVMPNTP+AVG+AA+VMSLGG+ATEEDG +I +LFGS+GKIW+A+EK FDAITGLSG
Sbjct: 121 RFIRVMPNTPAAVGQAASVMSLGGSATEEDGNIIAQLFGSIGKIWKAEEKYFDAITGLSG 180
Query: 181 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPG 240
SGPAY++LAIEALADGGVAAGLPR+L+L LASQTVLGAASMV+++GKHPGQLKDDV SPG
Sbjct: 181 SGPAYVYLAIEALADGGVAAGLPRDLSLSLASQTVLGAASMVSQTGKHPGQLKDDVTSPG 240
Query: 241 GTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 274
GTTI GIHELE GFRG LMNAVVAAAKRSRELS
Sbjct: 241 GTTITGIHELENGGFRGTLMNAVVAAAKRSRELS 274
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296882319|gb|ADH83382.1| pyrroline-5-carboxylate reductase [Arabis stelleri] | Back alignment and taxonomy information |
|---|
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 215/274 (78%), Positives = 238/274 (86%)
Query: 1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60
M+ PIPAESF +GF+GAGKMAESIA+GV SGVLPP+RICTAVHSNL RRD FES GV
Sbjct: 1 MEILPIPAESFKVGFVGAGKMAESIARGVVASGVLPPNRICTAVHSNLNRRDVFESFGVN 60
Query: 61 VLSDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHS 120
V S + VV+ SDVV+FSVKPQVVK ++ +S+ KLLVSVAAG+KLKDLQEW+G
Sbjct: 61 VFSSSEEVVKESDVVIFSVKPQVVKKAVTELSSKVSKNKLLVSVAAGIKLKDLQEWSGQD 120
Query: 121 RFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSG 180
RFIRVMPNTP+AVGEAATVMSLG ATEEDGEL+ KLFGSVGKI RADEK+FDA+TGLSG
Sbjct: 121 RFIRVMPNTPAAVGEAATVMSLGTAATEEDGELVAKLFGSVGKILRADEKMFDAVTGLSG 180
Query: 181 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPG 240
SGPAYI+LAIEALADGGVAAGL RELALGLASQTVLGAA+MV+K+GKHPG LKDDV SPG
Sbjct: 181 SGPAYIYLAIEALADGGVAAGLHRELALGLASQTVLGAATMVSKAGKHPGVLKDDVTSPG 240
Query: 241 GTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 274
GTTIAG+HELEK FR LMNAVVAAA RSRELS
Sbjct: 241 GTTIAGVHELEKGSFRATLMNAVVAAANRSRELS 274
|
Source: Arabis stelleri Species: Arabis stelleri Genus: Arabis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449449789|ref|XP_004142647.1| PREDICTED: pyrroline-5-carboxylate reductase-like [Cucumis sativus] gi|449527143|ref|XP_004170572.1| PREDICTED: pyrroline-5-carboxylate reductase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 216/274 (78%), Positives = 243/274 (88%)
Query: 1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60
M+ PI +++ LGFIGAGKMAESIAKG+ +SG+LPP RI TAVHSN RR AFES GV+
Sbjct: 1 MEVLPISIDAYRLGFIGAGKMAESIAKGIVQSGLLPPSRISTAVHSNPSRRIAFESFGVR 60
Query: 61 VLSDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHS 120
VL N+ VVE SDVV+ SVKPQVVK+V +++RPLLS KKLLVSVAAGVKLKDLQ+W GH+
Sbjct: 61 VLPKNDNVVEESDVVILSVKPQVVKNVVLKLRPLLSGKKLLVSVAAGVKLKDLQDWAGHN 120
Query: 121 RFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSG 180
RFIRVMPNTP+AVGEAA+VMSLG A +EDG+L+ KLFGSVGKIW A+EK FDA+TGLSG
Sbjct: 121 RFIRVMPNTPAAVGEAASVMSLGEGAIKEDGQLVAKLFGSVGKIWEAEEKYFDAVTGLSG 180
Query: 181 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPG 240
SGPAYIFLAIEALADGGVAAGLPRELA+GLASQTVLGAASMVTK+GKHPGQLKDDV SPG
Sbjct: 181 SGPAYIFLAIEALADGGVAAGLPRELAMGLASQTVLGAASMVTKTGKHPGQLKDDVTSPG 240
Query: 241 GTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 274
GTTIAGIHELEK G RG+ MNAVVAAAKR +ELS
Sbjct: 241 GTTIAGIHELEKGGLRGMFMNAVVAAAKRGQELS 274
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|417540|sp|Q04708.1|P5CR_PEA RecName: Full=Pyrroline-5-carboxylate reductase; Short=P5C reductase; Short=P5CR gi|20851|emb|CAA44646.1| pyrroline carboxylate reductase [Pisum sativum] gi|445614|prf||1909360A pyrroline carboxylate reductase | Back alignment and taxonomy information |
|---|
Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust.
Identities = 215/274 (78%), Positives = 242/274 (88%), Gaps = 1/274 (0%)
Query: 1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60
M+ PI ++S+ LGFIGAGKMAESIAKG ++SGVLP RI TA HSN RR AFESIG+
Sbjct: 1 MEILPILSDSYTLGFIGAGKMAESIAKGASRSGVLPSSRIVTA-HSNPSRRAAFESIGIT 59
Query: 61 VLSDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHS 120
VLS N+ VV S+VVVFSVKPQ+VKDV ++++PLL++ KLLVSVAAG+KLKDLQEW GH
Sbjct: 60 VLSSNDDVVRASNVVVFSVKPQLVKDVVLKLKPLLTKDKLLVSVAAGIKLKDLQEWAGHE 119
Query: 121 RFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSG 180
RFIRVMPNTP+AVG+AA+VMSLGG ATEED LI +LFGS+GKIW+AD+K FDAITGLSG
Sbjct: 120 RFIRVMPNTPAAVGQAASVMSLGGAATEEDANLISQLFGSIGKIWKADDKFFDAITGLSG 179
Query: 181 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPG 240
SGPAYI+LAIEALADGGVAAGLPR+LAL LASQTVLGAASM T SGKHPGQLKDDV SPG
Sbjct: 180 SGPAYIYLAIEALADGGVAAGLPRDLALSLASQTVLGAASMATLSGKHPGQLKDDVTSPG 239
Query: 241 GTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 274
GTTIAG+HELEK GFRG LMNAVVAAAKRSRELS
Sbjct: 240 GTTIAGVHELEKGGFRGTLMNAVVAAAKRSRELS 273
|
Source: Pisum sativum Species: Pisum sativum Genus: Pisum Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|13161407|dbj|BAB33038.1| VuP5CR [Vigna unguiculata] | Back alignment and taxonomy information |
|---|
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 213/274 (77%), Positives = 238/274 (86%)
Query: 1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60
M+ PIP +++ LGFIGAGKMAESIA+G +SGVLPP RI TAVHSN RR AFES GV
Sbjct: 1 MEIAPIPVDTYTLGFIGAGKMAESIARGAVRSGVLPPSRIRTAVHSNPARRTAFESFGVT 60
Query: 61 VLSDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHS 120
VLS N+ VV S+VVV SVKPQ+VKDV +++P++++ KLLVSVAAGVKLKDLQEW G
Sbjct: 61 VLSSNDEVVRQSNVVVLSVKPQLVKDVVSKLKPIITKDKLLVSVAAGVKLKDLQEWAGSD 120
Query: 121 RFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSG 180
RFIRVMPNTP+AVGEAA+VMSLG ATEEDG +I KLFGS+GKIWRA+EK FD ITGLSG
Sbjct: 121 RFIRVMPNTPAAVGEAASVMSLGAAATEEDGNVIAKLFGSIGKIWRAEEKYFDGITGLSG 180
Query: 181 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPG 240
SGPAYI+LAIEALADGGVAAGLPR+L+L LASQTVLGAASMVT+SGKHPGQLKDDV SPG
Sbjct: 181 SGPAYIYLAIEALADGGVAAGLPRDLSLSLASQTVLGAASMVTQSGKHPGQLKDDVTSPG 240
Query: 241 GTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 274
GTTI GIHELE GFRG LMNAVVAAAKRSRELS
Sbjct: 241 GTTITGIHELENGGFRGTLMNAVVAAAKRSRELS 274
|
Source: Vigna unguiculata Species: Vigna unguiculata Genus: Vigna Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356504710|ref|XP_003521138.1| PREDICTED: pyrroline-5-carboxylate reductase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 212/274 (77%), Positives = 238/274 (86%)
Query: 1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60
M+ PIPA+S+ LGFIGAGKMAESIA+G +SGVLPP RI TAVHSN RRD FES GV
Sbjct: 1 MEIVPIPADSYNLGFIGAGKMAESIARGAVRSGVLPPSRIRTAVHSNPARRDTFESFGVT 60
Query: 61 VLSDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHS 120
VL N+ VV S+VVVFSVKPQ+VKDV ++ PLL++ KLLVSVAAG KLKDLQEW G+
Sbjct: 61 VLPSNDDVVRESNVVVFSVKPQLVKDVVFKLTPLLTKNKLLVSVAAGTKLKDLQEWAGND 120
Query: 121 RFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSG 180
RFIRVMPNTP+AVGEAA+VMSLGG+ATEEDG +I KL GS+GKIW+A+EK FDAITGLSG
Sbjct: 121 RFIRVMPNTPAAVGEAASVMSLGGSATEEDGNIIAKLLGSIGKIWKAEEKYFDAITGLSG 180
Query: 181 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPG 240
SGPAY++LAIEALADGGVAAGLPR+L+L LASQTVLGAASMV ++GKHPGQLKDDV SPG
Sbjct: 181 SGPAYVYLAIEALADGGVAAGLPRDLSLSLASQTVLGAASMVIQTGKHPGQLKDDVTSPG 240
Query: 241 GTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 274
GTTI GIHELE GFRG LMNAVVAA KRSRELS
Sbjct: 241 GTTITGIHELENGGFRGTLMNAVVAATKRSRELS 274
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15241505|ref|NP_196984.1| Pyrroline-5-carboxylate reductase [Arabidopsis thaliana] gi|1709786|sp|P54904.1|P5CR1_ARATH RecName: Full=Pyrroline-5-carboxylate reductase; Short=P5C reductase; Short=P5CR; AltName: Full=Protein EMBRYO DEFECTIVE 2772 gi|15294224|gb|AAK95289.1|AF410303_1 AT5g14800/T9L3_100 [Arabidopsis thaliana] gi|166815|gb|AAA61346.1| pyrroline carboxylate reductase [Arabidopsis thaliana] gi|1632776|emb|CAA70148.1| T5r protein [Arabidopsis thaliana] gi|9755748|emb|CAC01879.1| pyrroline-5-carboxylate reductase [Arabidopsis thaliana] gi|20453291|gb|AAM19884.1| AT5g14800/T9L3_100 [Arabidopsis thaliana] gi|21593123|gb|AAM65072.1| pyrroline-5-carboxylate reductase [Arabidopsis thaliana] gi|332004695|gb|AED92078.1| Pyrroline-5-carboxylate reductase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 211/274 (77%), Positives = 237/274 (86%)
Query: 1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60
M+ PIPAESF +GFIGAGKMAESIA+GV SGVLPP+RICTAVHSNL RRD FES GV
Sbjct: 1 MEILPIPAESFKVGFIGAGKMAESIARGVVASGVLPPNRICTAVHSNLNRRDVFESFGVN 60
Query: 61 VLSDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHS 120
V S + VV+ SDVV+FSVKPQVVK +++ LS+ K+LVSVAAG+KL DLQEW+G
Sbjct: 61 VFSTSEEVVKESDVVIFSVKPQVVKKAVTELKSKLSKNKILVSVAAGIKLNDLQEWSGQD 120
Query: 121 RFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSG 180
RFIRVMPNTP+AVGEAA+VMSLG ATEEDG ++ LFG+VGKI +ADEK+FDA+TGLSG
Sbjct: 121 RFIRVMPNTPAAVGEAASVMSLGTGATEEDGAIVAMLFGAVGKILKADEKMFDAVTGLSG 180
Query: 181 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPG 240
SGPAYIFLAIEALADGGVAAGLPRELAL LASQTVLGAA+MV+K+GKHPG LKDDV SPG
Sbjct: 181 SGPAYIFLAIEALADGGVAAGLPRELALSLASQTVLGAATMVSKTGKHPGVLKDDVTSPG 240
Query: 241 GTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 274
GTTIAG+HELEK FR LMNAVVAAAKRSRELS
Sbjct: 241 GTTIAGVHELEKGSFRATLMNAVVAAAKRSRELS 274
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|312283283|dbj|BAJ34507.1| unnamed protein product [Thellungiella halophila] | Back alignment and taxonomy information |
|---|
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 214/274 (78%), Positives = 235/274 (85%)
Query: 1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60
M+ PI AESF +GFIGAGKMAESIA+GV SG+LPP RI TAVHSNL RR FES GV
Sbjct: 1 MEILPISAESFKVGFIGAGKMAESIARGVVASGMLPPHRISTAVHSNLNRRQVFESFGVN 60
Query: 61 VLSDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHS 120
V S + VV+ SDVV+FSVKPQVVK ++R LS+ KLLVSVAAG+KLKDLQEW+G
Sbjct: 61 VFSSSEEVVKESDVVIFSVKPQVVKKAVTELRTKLSKDKLLVSVAAGIKLKDLQEWSGQD 120
Query: 121 RFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSG 180
RFIRVMPNTP+AVGEAA+VMSLG ATEEDG L+ KLFGSVGKI RADEK+FDA+TGLSG
Sbjct: 121 RFIRVMPNTPAAVGEAASVMSLGTAATEEDGALVAKLFGSVGKILRADEKMFDAVTGLSG 180
Query: 181 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPG 240
SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAA+MV+K+GKHPG LKDDV SPG
Sbjct: 181 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAATMVSKTGKHPGVLKDDVTSPG 240
Query: 241 GTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 274
GTTIAG+HELEK FR LMNAVVAAA RSRELS
Sbjct: 241 GTTIAGVHELEKGSFRATLMNAVVAAANRSRELS 274
|
Source: Thellungiella halophila Species: Eutrema halophilum Genus: Eutrema Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 274 | ||||||
| TAIR|locus:2185435 | 276 | P5CR "pyrroline-5- carboxylate | 1.0 | 0.992 | 0.715 | 1.7e-98 | |
| WB|WBGene00010924 | 279 | M153.1 [Caenorhabditis elegans | 0.934 | 0.917 | 0.431 | 2.4e-51 | |
| UNIPROTKB|B4DMU0 | 346 | PYCR1 "Pyrroline-5-carboxylate | 0.967 | 0.765 | 0.437 | 2.9e-48 | |
| TIGR_CMR|GSU_2541 | 270 | GSU_2541 "pyrroline-5-carboxyl | 0.948 | 0.962 | 0.438 | 2.9e-48 | |
| ZFIN|ZDB-GENE-040426-1675 | 320 | pycr1 "pyrroline-5-carboxylate | 0.952 | 0.815 | 0.428 | 2.9e-48 | |
| FB|FBgn0038516 | 273 | CG5840 [Drosophila melanogaste | 0.952 | 0.956 | 0.428 | 4.7e-48 | |
| ZFIN|ZDB-GENE-050522-26 | 362 | zgc:110655 "zgc:110655" [Danio | 0.952 | 0.720 | 0.424 | 6e-48 | |
| UNIPROTKB|P32322 | 319 | PYCR1 "Pyrroline-5-carboxylate | 0.952 | 0.818 | 0.439 | 7.7e-48 | |
| UNIPROTKB|Q5R9X6 | 319 | PYCR1 "Pyrroline-5-carboxylate | 0.952 | 0.818 | 0.439 | 7.7e-48 | |
| UNIPROTKB|F1S8R2 | 320 | LOC100524702 "Pyrroline-5-carb | 0.952 | 0.815 | 0.428 | 2e-47 |
| TAIR|locus:2185435 P5CR "pyrroline-5- carboxylate (P5C) reductase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 978 (349.3 bits), Expect = 1.7e-98, P = 1.7e-98
Identities = 196/274 (71%), Positives = 220/274 (80%)
Query: 1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60
M+ PIPAESF +GFIGAGKMAESIA+GV SGVLPP+RICTAVHSNL RRD FES GV
Sbjct: 1 MEILPIPAESFKVGFIGAGKMAESIARGVVASGVLPPNRICTAVHSNLNRRDVFESFGVN 60
Query: 61 VLSDNNAXXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHS 120
V S + +++ LS+ K+LVSVAAG+KL DLQEW+G
Sbjct: 61 VFSTSEEVVKESDVVIFSVKPQVVKKAVTELKSKLSKNKILVSVAAGIKLNDLQEWSGQD 120
Query: 121 RFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSG 180
RFIRVMPNTP+AVGEAA+VMSLG ATEEDG ++ LFG+VGKI +ADEK+FDA+TGLSG
Sbjct: 121 RFIRVMPNTPAAVGEAASVMSLGTGATEEDGAIVAMLFGAVGKILKADEKMFDAVTGLSG 180
Query: 181 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPG 240
SGPAYIFLAIEALADGGVAAGLPRELAL LASQTVLGAA+MV+K+GKHPG LKDDV SPG
Sbjct: 181 SGPAYIFLAIEALADGGVAAGLPRELALSLASQTVLGAATMVSKTGKHPGVLKDDVTSPG 240
Query: 241 GTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 274
GTTIAG+HELEK FR LMNAVVAAAKRSRELS
Sbjct: 241 GTTIAGVHELEKGSFRATLMNAVVAAAKRSRELS 274
|
|
| WB|WBGene00010924 M153.1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
Identities = 114/264 (43%), Positives = 162/264 (61%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF----ESIGVKVLSDNNAX 68
+GFIGAGKMA+++A+G+ SG + D I + S+ KR + F +++G+ DN
Sbjct: 3 IGFIGAGKMAQALARGLINSGRITADNI---IASSPKRDEVFLDQCKALGLNTTHDNAEV 59
Query: 69 XXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMP 127
A +I P LS++ L+VS+A G+ +++++ SR +RVMP
Sbjct: 60 VQKSDVVFLAVKPVHVSKVASEIAPALSKEHLVVSIALGITIRNIESLLPTKSRVVRVMP 119
Query: 128 NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIF 187
NTPS V A+ ++G + D E + KL +VG E D +TGLSGSGP+Y+F
Sbjct: 120 NTPSVVRAGASAFAMGSACRDGDAETVEKLLSTVGFAVEVPEIHIDPVTGLSGSGPSYMF 179
Query: 188 LAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 247
IE LADGGV GLPR+LAL LA+ T+LGAA MV ++G HP QLKDDV SP G+++ G+
Sbjct: 180 AVIEGLADGGVKVGLPRDLALKLAAYTLLGAAKMVLETGIHPAQLKDDVQSPAGSSVYGM 239
Query: 248 HELEKSGFRGILMNAVVAAAKRSR 271
H+LE G +G+LM+AV AA RSR
Sbjct: 240 HKLESGGLKGVLMDAVEAATNRSR 263
|
|
| UNIPROTKB|B4DMU0 PYCR1 "Pyrroline-5-carboxylate reductase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
Identities = 118/270 (43%), Positives = 157/270 (58%)
Query: 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNA 67
+S +GFIGAG++A ++AKG +GVL +I ++ +L A +GVK+ N
Sbjct: 26 DSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKE 85
Query: 68 XXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKL----KDLQEWTGHSRFI 123
+I + + ++VS AAGV + K L + R I
Sbjct: 86 TVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVI 145
Query: 124 RVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGP 183
R M NTP V E ATV + G A EDG L+ +L SVG +E L DA+TGLSGSGP
Sbjct: 146 RCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGP 205
Query: 184 AYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTT 243
AY F A++ALADGGV GLPR LA+ L +Q +LGAA M+ S +HPGQLKD+V+SPGG T
Sbjct: 206 AYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGAT 265
Query: 244 IAGIHELEKSGFRGILMNAVVAAAKRSREL 273
I +H LE GFR +L+NAV A+ R+REL
Sbjct: 266 IHALHVLESGGFRSLLINAVEASCIRTREL 295
|
|
| TIGR_CMR|GSU_2541 GSU_2541 "pyrroline-5-carboxylate reductase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
Identities = 115/262 (43%), Positives = 152/262 (58%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAXXXXX 72
LGFIG G MAE+I KG+ GV D + A +R + G+ V +DN
Sbjct: 7 LGFIGGGNMAEAIIKGLLAGGVAAAD-VMVAEPVAARREYLHGTYGIDVCADNGRVAAAA 65
Query: 73 XXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHS-RFIRVMPNTPS 131
+ P KLL+S+ AG+ D++E G + R IRVMPNTP+
Sbjct: 66 DALVMAVKPQVFRGMVAALGPAGLDGKLLISIMAGITTADMEEVCGSAARVIRVMPNTPA 125
Query: 132 AVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIE 191
V E A+ + G AT++D +F VG +EKL DA+TG+SG GPAY+FL +E
Sbjct: 126 LVLEGASTLCRGRNATDDDLFFATGIFDLVGTTCVVEEKLMDAVTGVSGCGPAYVFLFME 185
Query: 192 ALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELE 251
AL+D GV GLPR++A LA+QTVLGAA ++ ++G HPG LK+ V SPGG+TIAGI LE
Sbjct: 186 ALSDAGVKNGLPRDVATRLAAQTVLGAARLLLETGDHPGVLKEKVTSPGGSTIAGIASLE 245
Query: 252 KSGFRGILMNAVVAAAKRSREL 273
+ FRG +M AV AA RS EL
Sbjct: 246 RDAFRGAVMAAVDAATARSAEL 267
|
|
| ZFIN|ZDB-GENE-040426-1675 pycr1 "pyrroline-5-carboxylate reductase 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
Identities = 114/266 (42%), Positives = 156/266 (58%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAXXXX 71
+GFIGAG++A ++ KG +GV+ RI ++ ++L +G + N
Sbjct: 3 VGFIGAGQLAHALVKGFTAAGVIATHRITASSPDTDLPTVIGLRKMGAFFTTSNKETVSK 62
Query: 72 XXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKL----KDLQEWTGHSRFIRVMP 127
+I P + + L+VS AAGV + K L ++ + IR M
Sbjct: 63 SDVLFLAVKPHIIPFVLDEIGPDIEDRHLIVSCAAGVTISSIEKKLLQYRSAPKVIRCMT 122
Query: 128 NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIF 187
NTP V E ATV + G A EDG+L+ +L SVG +E L DA+TGLSGSGPAY F
Sbjct: 123 NTPVVVREGATVYATGTHAEVEDGKLLEQLMASVGYCTEVEEDLIDAVTGLSGSGPAYAF 182
Query: 188 LAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 247
A++ALADGGV GLPR LA+ L +Q +LGAA M+ +S +HPGQLKD+VASPGG TI +
Sbjct: 183 TAVDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLESEQHPGQLKDNVASPGGATIHAL 242
Query: 248 HELEKSGFRGILMNAVVAAAKRSREL 273
H +E GFR +L+NAV A+ R+REL
Sbjct: 243 HVMESGGFRSLLINAVEASCIRTREL 268
|
|
| FB|FBgn0038516 CG5840 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
Identities = 113/264 (42%), Positives = 152/264 (57%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR-DAFESIGVKVLSDNNAXXXX 71
+GF+G G MA+++AKG +G+ P+ + +VH K +F+S+GV+ + N
Sbjct: 7 IGFLGGGNMAKALAKGFLAAGLAKPNTLIASVHPADKLSLQSFQSLGVETVIKNAPVVQQ 66
Query: 72 XXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKLKDLQE-WTGHSRFIRVMPNTP 130
+I+PL S KL +SVA G+ L ++ + +R IRVMPN P
Sbjct: 67 SDVVFVSVKPQVVPSVLSEIQPL-SSGKLFLSVAMGITLSTIESSLSPQARVIRVMPNLP 125
Query: 131 SAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAI 190
+ V +V G AT+ D ++ KL SVG DE D +T LSGSGPAY+F+ I
Sbjct: 126 AVVCSGCSVFVRGSKATDADADITQKLLQSVGTCEPVDESQLDVVTALSGSGPAYVFVMI 185
Query: 191 EALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHEL 250
EALADG V G+PR+LA LASQTVLGA MV SG HPGQLKD V SP G+T A + +L
Sbjct: 186 EALADGAVHMGMPRDLAYRLASQTVLGAGHMVRDSGMHPGQLKDGVTSPAGSTAAALRQL 245
Query: 251 EKSGFRGILMNAVVAAAKRSRELS 274
E SGFR + AV A R R++S
Sbjct: 246 ELSGFRAAVSGAVEQATLRCRQIS 269
|
|
| ZFIN|ZDB-GENE-050522-26 zgc:110655 "zgc:110655" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
Identities = 113/266 (42%), Positives = 156/266 (58%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAXXXX 71
+GFIGAG++A ++ KG +GV+ +RI ++ + L +GV + + N
Sbjct: 48 VGFIGAGQLAHAMVKGFTAAGVIAANRITASSPDTELPTVSGLRKMGVNLTTSNKEATHR 107
Query: 72 XXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKL----KDLQEWTGHSRFIRVMP 127
+I P + + L+VS AAGV + K L ++ + +R M
Sbjct: 108 SDVLFLAVKPHIIPFVLDEIGPDIEDRHLIVSCAAGVTISSIEKKLLQYRESPKVMRCMT 167
Query: 128 NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIF 187
NTP V E ATV + G A EDG+L+ +L SVG +E L DA+TGLSGSGPAY F
Sbjct: 168 NTPVVVREGATVYATGTHAHLEDGKLLEQLMASVGFCTEVEEDLIDAVTGLSGSGPAYAF 227
Query: 188 LAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 247
A++ALADGGV GLPR LA+ L +Q ++GAA M+ S +HPGQLKD+V SPGG TI +
Sbjct: 228 TALDALADGGVKMGLPRRLAVRLGAQALMGAAKMLLDSEQHPGQLKDNVCSPGGATIHAL 287
Query: 248 HELEKSGFRGILMNAVVAAAKRSREL 273
H LE GFR +L+NAV A+ R+REL
Sbjct: 288 HFLESGGFRSLLINAVEASCIRTREL 313
|
|
| UNIPROTKB|P32322 PYCR1 "Pyrroline-5-carboxylate reductase 1, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
Identities = 117/266 (43%), Positives = 155/266 (58%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAXXXX 71
+GFIGAG++A ++AKG +GVL +I ++ +L A +GVK+ N
Sbjct: 3 VGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQH 62
Query: 72 XXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKL----KDLQEWTGHSRFIRVMP 127
+I + + ++VS AAGV + K L + R IR M
Sbjct: 63 SDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMT 122
Query: 128 NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIF 187
NTP V E ATV + G A EDG L+ +L SVG +E L DA+TGLSGSGPAY F
Sbjct: 123 NTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAF 182
Query: 188 LAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 247
A++ALADGGV GLPR LA+ L +Q +LGAA M+ S +HPGQLKD+V+SPGG TI +
Sbjct: 183 TALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGATIHAL 242
Query: 248 HELEKSGFRGILMNAVVAAAKRSREL 273
H LE GFR +L+NAV A+ R+REL
Sbjct: 243 HVLESGGFRSLLINAVEASCIRTREL 268
|
|
| UNIPROTKB|Q5R9X6 PYCR1 "Pyrroline-5-carboxylate reductase 1, mitochondrial" [Pongo abelii (taxid:9601)] | Back alignment and assigned GO terms |
|---|
Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
Identities = 117/266 (43%), Positives = 155/266 (58%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAXXXX 71
+GFIGAG++A ++AKG +GVL +I ++ +L A +GVK+ N
Sbjct: 3 VGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQH 62
Query: 72 XXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKL----KDLQEWTGHSRFIRVMP 127
+I + + ++VS AAGV + K L + R IR M
Sbjct: 63 SDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMT 122
Query: 128 NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIF 187
NTP V E ATV + G A EDG L+ +L SVG +E L DA+TGLSGSGPAY F
Sbjct: 123 NTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAF 182
Query: 188 LAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 247
A++ALADGGV GLPR LA+ L +Q +LGAA M+ S +HPGQLKD+V+SPGG TI +
Sbjct: 183 TALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGATIHAL 242
Query: 248 HELEKSGFRGILMNAVVAAAKRSREL 273
H LE GFR +L+NAV A+ R+REL
Sbjct: 243 HVLESGGFRSLLINAVEASCIRTREL 268
|
|
| UNIPROTKB|F1S8R2 LOC100524702 "Pyrroline-5-carboxylate reductase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
Identities = 114/266 (42%), Positives = 156/266 (58%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAXXXX 71
+GFIGAG++A ++A+G +G+L +I ++ +L A +GV + N
Sbjct: 3 VGFIGAGQLACALARGFTAAGILSAHKIIASSPEMDLPTVAALRKMGVNLTRSNKETVRH 62
Query: 72 XXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKL----KDLQEWTGHSRFIRVMP 127
+I + + ++VS AAGV + K LQ + + IR M
Sbjct: 63 SDVLFLAVKPHIIPFILDEIGADVQARHIVVSCAAGVTISSVEKKLQAFQPAPKVIRCMT 122
Query: 128 NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIF 187
NTP V E ATV + G A EDG+L+ +L SVG +E L DA+TGLSGSGPAY F
Sbjct: 123 NTPVVVREGATVYATGTHALVEDGQLLEQLMSSVGFCTEVEEDLIDAVTGLSGSGPAYAF 182
Query: 188 LAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 247
+A++ALADGGV GLPR LA+ L +Q +LGAA M+ S +HPGQLKD+V SPGG TI +
Sbjct: 183 MALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLDSEQHPGQLKDNVCSPGGATIHAL 242
Query: 248 HELEKSGFRGILMNAVVAAAKRSREL 273
H LE GFR +L+NAV A+ R+REL
Sbjct: 243 HFLESGGFRSLLINAVEASCIRTREL 268
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q4L6K3 | P5CR_STAHJ | 1, ., 5, ., 1, ., 2 | 0.3030 | 0.9562 | 0.9667 | yes | no |
| P54904 | P5CR1_ARATH | 1, ., 5, ., 1, ., 2 | 0.7700 | 1.0 | 0.9927 | yes | no |
| Q9CPE8 | P5CR_PASMU | 1, ., 5, ., 1, ., 2 | 0.3283 | 0.9452 | 0.9418 | yes | no |
| P46725 | P5CR_MYCLE | 1, ., 5, ., 1, ., 2 | 0.3503 | 0.9087 | 0.8469 | yes | no |
| P43869 | P5CR_HAEIN | 1, ., 5, ., 1, ., 2 | 0.3245 | 0.9489 | 0.9594 | yes | no |
| Q9P7Y7 | P5CR_SCHPO | 1, ., 5, ., 1, ., 2 | 0.3394 | 0.9160 | 0.8900 | yes | no |
| Q5R9X6 | P5CR1_PONAB | 1, ., 5, ., 1, ., 2 | 0.4661 | 0.9525 | 0.8181 | yes | no |
| Q922Q4 | P5CR2_MOUSE | 1, ., 5, ., 1, ., 2 | 0.4548 | 0.9525 | 0.8156 | yes | no |
| Q04708 | P5CR_PEA | 1, ., 5, ., 1, ., 2 | 0.7846 | 0.9963 | 1.0 | N/A | no |
| E0TY11 | P5CR1_BACPZ | 1, ., 5, ., 1, ., 2 | 0.3560 | 0.9562 | 0.8821 | yes | no |
| O04016 | P5CR_ACTCH | 1, ., 5, ., 1, ., 2 | 0.7918 | 0.9781 | 0.9640 | N/A | no |
| P32263 | P5CR_YEAST | 1, ., 5, ., 1, ., 2 | 0.3250 | 0.9525 | 0.9125 | yes | no |
| Q9HH99 | P5CR_METAC | 1, ., 5, ., 1, ., 2 | 0.4473 | 0.9671 | 0.9814 | yes | no |
| P54893 | P5CR_THET2 | 1, ., 5, ., 1, ., 2 | 0.3764 | 0.9233 | 0.9693 | yes | no |
| P0CI77 | P5CR1_BACSU | 1, ., 5, ., 1, ., 2 | 0.3560 | 0.9562 | 0.8821 | yes | no |
| Q17QJ7 | P5CR2_BOVIN | 1, ., 5, ., 1, ., 2 | 0.4511 | 0.9525 | 0.8156 | yes | no |
| P0A9L9 | P5CR_SHIFL | 1, ., 5, ., 1, ., 2 | 0.3764 | 0.9562 | 0.9739 | yes | no |
| P22008 | P5CR_PSEAE | 1, ., 5, ., 1, ., 2 | 0.3901 | 0.9525 | 0.9560 | yes | no |
| P27771 | P5CR_TREPA | 1, ., 5, ., 1, ., 2 | 0.3068 | 0.9306 | 0.9695 | yes | no |
| P17817 | P5CR_SOYBN | 1, ., 5, ., 1, ., 2 | 0.7810 | 1.0 | 1.0 | yes | no |
| O66553 | P5CR_AQUAE | 1, ., 5, ., 1, ., 2 | 0.3383 | 0.9160 | 0.9471 | yes | no |
| P0C1E4 | P5CR_CORGL | 1, ., 5, ., 1, ., 2 | 0.3622 | 0.9489 | 0.9629 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.1 | LOW CONFIDENCE prediction! |
| 4th Layer | 1.5.1.2 | 0.979 |
| 3rd Layer | 1.5.1 | 0.983 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 274 | |||
| PLN02688 | 266 | PLN02688, PLN02688, pyrroline-5-carboxylate reduct | 1e-156 | |
| PRK11880 | 267 | PRK11880, PRK11880, pyrroline-5-carboxylate reduct | 1e-103 | |
| COG0345 | 266 | COG0345, ProC, Pyrroline-5-carboxylate reductase [ | 1e-101 | |
| TIGR00112 | 245 | TIGR00112, proC, pyrroline-5-carboxylate reductase | 4e-98 | |
| PRK12491 | 272 | PRK12491, PRK12491, pyrroline-5-carboxylate reduct | 3e-59 | |
| PTZ00431 | 260 | PTZ00431, PTZ00431, pyrroline carboxylate reductas | 4e-59 | |
| PRK07679 | 279 | PRK07679, PRK07679, pyrroline-5-carboxylate reduct | 1e-53 | |
| PRK07634 | 245 | PRK07634, PRK07634, pyrroline-5-carboxylate reduct | 8e-36 | |
| PRK06928 | 277 | PRK06928, PRK06928, pyrroline-5-carboxylate reduct | 2e-22 | |
| PRK07680 | 273 | PRK07680, PRK07680, late competence protein ComER; | 7e-21 | |
| pfam03807 | 93 | pfam03807, F420_oxidored, NADP oxidoreductase coen | 1e-15 | |
| PRK06476 | 258 | PRK06476, PRK06476, pyrroline-5-carboxylate reduct | 9e-15 | |
| pfam01210 | 157 | pfam01210, NAD_Gly3P_dh_N, NAD-dependent glycerol- | 0.003 |
| >gnl|CDD|178291 PLN02688, PLN02688, pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Score = 436 bits (1123), Expect = e-156
Identities = 189/262 (72%), Positives = 218/262 (83%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYS 72
+GFIGAGKMAE+IA+G+ SGV+PP RI TA SN RRD F+S+GVK + N VV+ S
Sbjct: 3 VGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSS 62
Query: 73 DVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNTPSA 132
DV++ +VKPQVVKDV ++RPLLS+ KLLVSVAAG+ L DLQEW G R +RVMPNTP
Sbjct: 63 DVIILAVKPQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQEWAGGRRVVRVMPNTPCL 122
Query: 133 VGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEA 192
VGEAA+VMSLG AT +D +L+ LFG+VGKIW DEKL DA+TGLSGSGPAYIFLAIEA
Sbjct: 123 VGEAASVMSLGPAATADDRDLVATLFGAVGKIWVVDEKLLDAVTGLSGSGPAYIFLAIEA 182
Query: 193 LADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEK 252
LADGGVAAGLPR++AL LA+QTVLGAA MV ++GKHPGQLKD V SPGGTTIAG+HELEK
Sbjct: 183 LADGGVAAGLPRDVALSLAAQTVLGAAKMVLETGKHPGQLKDMVTSPGGTTIAGVHELEK 242
Query: 253 SGFRGILMNAVVAAAKRSRELS 274
GFR LMNAVVAAAKRSRELS
Sbjct: 243 GGFRAALMNAVVAAAKRSRELS 264
|
Length = 266 |
| >gnl|CDD|237008 PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Score = 301 bits (773), Expect = e-103
Identities = 127/266 (47%), Positives = 171/266 (64%), Gaps = 7/266 (2%)
Query: 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF-ESIGVKVLSDNNAVVE 70
+GFIG G MA +I G+ SGV P I + ++R A E GV+ +DN +
Sbjct: 4 KIGFIGGGNMASAIIGGLLASGV-PAKDII-VSDPSPEKRAALAEEYGVRAATDNQEAAQ 61
Query: 71 YSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHS-RFIRVMPNT 129
+DVVV +VKPQV+++V +++ L KL+VS+AAGV L L+ G +R MPNT
Sbjct: 62 EADVVVLAVKPQVMEEVLSELKGQL--DKLVVSIAAGVTLARLERLLGADLPVVRAMPNT 119
Query: 130 PSAVGEAATVMSLGGTATEEDGELIGKLFGSVGK-IWRADEKLFDAITGLSGSGPAYIFL 188
P+ VG T ++ + ED EL+ L + GK +W DEK DA+T +SGSGPAY+FL
Sbjct: 120 PALVGAGMTALTANALVSAEDRELVENLLSAFGKVVWVDDEKQMDAVTAVSGSGPAYVFL 179
Query: 189 AIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIH 248
IEALAD GV GLPRE A LA+QTVLGAA ++ +SG+HP +L+D+V SPGGTTIA +
Sbjct: 180 FIEALADAGVKLGLPREQARKLAAQTVLGAAKLLLESGEHPAELRDNVTSPGGTTIAALR 239
Query: 249 ELEKSGFRGILMNAVVAAAKRSRELS 274
LE+ G R ++ AV AAAKRS+EL
Sbjct: 240 VLEEKGLRAAVIEAVQAAAKRSKELG 265
|
Length = 267 |
| >gnl|CDD|223422 COG0345, ProC, Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 296 bits (759), Expect = e-101
Identities = 132/262 (50%), Positives = 174/262 (66%), Gaps = 1/262 (0%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYS 72
+GFIGAG M E+I G+ KSG LPP+ I S KR GV +DN VE +
Sbjct: 4 IGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEA 63
Query: 73 DVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNTPSA 132
DVV +VKPQ +++V +++PL ++ KL++S+AAGV ++ L+ G R +RVMPNTP+
Sbjct: 64 DVVFLAVKPQDLEEVLSKLKPL-TKDKLVISIAAGVSIETLERLLGGLRVVRVMPNTPAL 122
Query: 133 VGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEA 192
VG T +S +EED + L +VGK+ +E L DA+T LSGSGPAY+FL IEA
Sbjct: 123 VGAGVTAISANANVSEEDKAFVEALLSAVGKVVEVEESLMDAVTALSGSGPAYVFLFIEA 182
Query: 193 LADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEK 252
LAD GV GLPRE A LA+QTV GAA ++ +SG+HP +L+D V SPGGTTIAG+ LE+
Sbjct: 183 LADAGVRLGLPREEARELAAQTVAGAAKLLLESGEHPAELRDQVTSPGGTTIAGLRVLEE 242
Query: 253 SGFRGILMNAVVAAAKRSRELS 274
GFRG ++ AV AA KRS EL
Sbjct: 243 DGFRGAVIEAVEAAYKRSEELG 264
|
Length = 266 |
| >gnl|CDD|232829 TIGR00112, proC, pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Score = 287 bits (736), Expect = 4e-98
Identities = 117/243 (48%), Positives = 156/243 (64%), Gaps = 1/243 (0%)
Query: 31 KSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAMQ 90
K+G L I S K + +G+ SD V+ +DVV +VKPQ +++V +
Sbjct: 3 KAGALAAYDIIVINRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVKPQDLEEVLSE 62
Query: 91 IRPLLSRKKLLVSVAAGVKLKDLQEWTGH-SRFIRVMPNTPSAVGEAATVMSLGGTATEE 149
++ + KLL+S+AAGV L+ L + G R +RVMPNTP+ VG T ++ +EE
Sbjct: 63 LKSEKGKDKLLISIAAGVTLEKLSQLLGGTRRVVRVMPNTPAKVGAGVTAIAANANVSEE 122
Query: 150 DGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALG 209
D L+ LF +VG++ E L DA+T LSGSGPAY+FL IEALAD GV GLPRELAL
Sbjct: 123 DRALVLALFKAVGEVVELPEALMDAVTALSGSGPAYVFLFIEALADAGVKQGLPRELALE 182
Query: 210 LASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKR 269
LA+QTV GAA ++ +SG+HP LKD V SPGGTTIAG+ LE+ G RG ++ AV AA +R
Sbjct: 183 LAAQTVKGAAKLLEESGEHPALLKDQVTSPGGTTIAGLAVLEEKGVRGAVIEAVEAAVRR 242
Query: 270 SRE 272
SRE
Sbjct: 243 SRE 245
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs [Amino acid biosynthesis, Glutamate family]. Length = 245 |
| >gnl|CDD|105695 PRK12491, PRK12491, pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Score = 189 bits (481), Expect = 3e-59
Identities = 96/263 (36%), Positives = 158/263 (60%), Gaps = 1/263 (0%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYS 72
+GFIG G M ++ G+ ++ PD+I + + ++A + G+ + ++NN V +
Sbjct: 5 IGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSA 64
Query: 73 DVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQ-EWTGHSRFIRVMPNTPS 131
D+++ S+KP + V QI+ + ++V++AAG +K + E+ + IRVMPNTP
Sbjct: 65 DILILSIKPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPV 124
Query: 132 AVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIE 191
VGE + + TE+D + + +F G+ +EKL D +T +SGS PAY+++ IE
Sbjct: 125 LVGEGMSALCFNEMVTEKDIKEVLNIFNIFGQTEVVNEKLMDVVTSISGSSPAYVYMFIE 184
Query: 192 ALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELE 251
A+AD V G+PR+ A A+Q VLG+A MV ++G HPG+LKD V SPGGTTI + LE
Sbjct: 185 AMADAAVLGGMPRKQAYKFAAQAVLGSAKMVLETGIHPGELKDMVCSPGGTTIEAVATLE 244
Query: 252 KSGFRGILMNAVVAAAKRSRELS 274
+ G R +++A+ ++S E+S
Sbjct: 245 EKGLRTAIISAMKRCTQKSMEMS 267
|
Length = 272 |
| >gnl|CDD|173621 PTZ00431, PTZ00431, pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Score = 188 bits (479), Expect = 4e-59
Identities = 102/266 (38%), Positives = 153/266 (57%), Gaps = 9/266 (3%)
Query: 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAV 68
E+ +GFIG GKM ++A G+ S ++ + I H+ K+ F L N +
Sbjct: 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENI--YYHTPSKKNTPF-----VYLQSNEEL 54
Query: 69 VEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMP 127
+ D++V +VKP + V ++I+P L KLL+S+ G+ LK L+E G ++ +RVMP
Sbjct: 55 AKTCDIIVLAVKPDLAGKVLLEIKPYLG-SKLLISICGGLNLKTLEEMVGVEAKIVRVMP 113
Query: 128 NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIF 187
NTPS VG+ + V D + + +F + G I EK D T +SG GPAY+F
Sbjct: 114 NTPSLVGQGSLVFCANNNVDSTDKKKVIDIFSACGIIQEIKEKDMDIATAISGCGPAYVF 173
Query: 188 LAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 247
L IE+L D GV GL R+++ L QT+LG+ MV S + QLKDDV SPGG TI G+
Sbjct: 174 LFIESLIDAGVKNGLNRDVSKNLVLQTILGSVHMVKASDQPVQQLKDDVCSPGGITIVGL 233
Query: 248 HELEKSGFRGILMNAVVAAAKRSREL 273
+ LEK F+ +M+AV +A ++S+ +
Sbjct: 234 YTLEKHAFKYTVMDAVESACQKSKSM 259
|
Length = 260 |
| >gnl|CDD|181079 PRK07679, PRK07679, pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Score = 175 bits (445), Expect = 1e-53
Identities = 85/261 (32%), Positives = 147/261 (56%), Gaps = 2/261 (0%)
Query: 15 FIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-RDAFESIGVKVLSDNNAVVEYSD 73
F+GAG +AE+I G+ + V+ ++I + SN R ++ + GVK + ++ ++
Sbjct: 8 FLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDAN 67
Query: 74 VVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHS-RFIRVMPNTPSA 132
++ ++KP+ V + + + + +L++S+ AGV ++ IR MPNT +A
Sbjct: 68 ILFLAMKPKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAA 127
Query: 133 VGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEA 192
+ ++AT +S AT E + LF ++G + +E+ A+T LSGSGPAYI+ +EA
Sbjct: 128 ILKSATAISPSKHATAEHIQTAKALFETIGLVSVVEEEDMHAVTALSGSGPAYIYYVVEA 187
Query: 193 LADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEK 252
+ GL ++A L QT++GAA M+ S KHP L+ ++ SPGGTT AGI L++
Sbjct: 188 MEKAAKKIGLKEDVAKSLILQTMIGAAEMLKASEKHPSILRKEITSPGGTTEAGIEVLQE 247
Query: 253 SGFRGILMNAVVAAAKRSREL 273
F+ L++ + A +RS L
Sbjct: 248 HRFQQALISCITQATQRSHNL 268
|
Length = 279 |
| >gnl|CDD|181063 PRK07634, PRK07634, pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 8e-36
Identities = 69/247 (27%), Positives = 128/247 (51%), Gaps = 20/247 (8%)
Query: 15 FIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSD 73
FIGAG+MAE+I G+ K+ + I + SN+++ D ++ V +D V D
Sbjct: 9 FIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVD 68
Query: 74 VVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQE---------WTGHSRFIR 124
+V ++ P +++ ++ PLLS + L+V+VAAG+ L+E W
Sbjct: 69 TIVLAMPPSAHEELLAELSPLLSNQ-LVVTVAAGIGPSYLEERLPKGTPVAW-------- 119
Query: 125 VMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPA 184
+MPNT + +G++ ++ ++G + E E + + +G E+ +T ++GS PA
Sbjct: 120 IMPNTAAEIGKSISLYTMGQSVNETHKETLQLILKGIGTSQLCTEEEVHQLTAVTGSAPA 179
Query: 185 YIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTI 244
+++ E+L + + G+ E A L Q + G+ASM+ + + P L++ V +PGG+T
Sbjct: 180 FLYYFAESLIEATKSYGVDEETAKHLVIQMISGSASML-EQTQDPANLREQVTTPGGSTA 238
Query: 245 AGIHELE 251
G+ L
Sbjct: 239 EGLKALY 245
|
Length = 245 |
| >gnl|CDD|235888 PRK06928, PRK06928, pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Score = 92.9 bits (231), Expect = 2e-22
Identities = 62/244 (25%), Positives = 105/244 (43%), Gaps = 3/244 (1%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-LSDNNA-VVE 70
+GFIG G MA+ IA + ++ V P+ I S + + V L+DN A +
Sbjct: 4 IGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFT 63
Query: 71 YSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNTP 130
D V P V + P+L+ + +VS+AAGV L DL E T + R++P+
Sbjct: 64 KCDHSFICVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPGLQVSRLIPSLT 123
Query: 131 SAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAI 190
SAVG ++++ T E + + + + E+ D + L+ S P +I
Sbjct: 124 SAVGVGTSLVAHAETVNEANKSRLEETLSHFSHVMTIREENMDIASNLTSSSPGFIAAIF 183
Query: 191 EALADGGVA-AGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHE 249
E A+ V + L E A + + G ++ + + VA+ GG T G
Sbjct: 184 EEFAEAAVRNSSLSDEEAFQFLNFALAGTGKLLVEEDYTFSGTIERVATKGGITAEGAEV 243
Query: 250 LEKS 253
++
Sbjct: 244 IQAQ 247
|
Length = 277 |
| >gnl|CDD|181080 PRK07680, PRK07680, late competence protein ComER; Validated | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 7e-21
Identities = 56/245 (22%), Positives = 112/245 (45%), Gaps = 11/245 (4%)
Query: 14 GFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-----NLKRRDAFESIGVKVLSDNNAV 68
GFIG G M + + +SG + P ++ + ++K R G+ V V
Sbjct: 4 GFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYP----GIHVAKTIEEV 59
Query: 69 VEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPN 128
+ SD++ VKP + + ++ P L+ + LVS+ + + ++ L+ + R++P+
Sbjct: 60 ISQSDLIFICVKPLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLET-LVPCQVARIIPS 118
Query: 129 TPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFL 188
+ A++ + G +EED + + +LF ++ +E + + + GPA+
Sbjct: 119 ITNRALSGASLFTFGSRCSEEDQQKLERLFSNISTPLVIEEDITRVSSDIVSCGPAFFSY 178
Query: 189 AIEALADGGVA-AGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 247
++ D V + +E A LAS+ ++G ++ K L++ V GG T GI
Sbjct: 179 LLQRFIDAAVEETNISKEEATTLASEMLIGMGKLLEKGLYTLPTLQEKVCVKGGITGEGI 238
Query: 248 HELEK 252
LE+
Sbjct: 239 KVLEE 243
|
Length = 273 |
| >gnl|CDD|202773 pfam03807, F420_oxidored, NADP oxidoreductase coenzyme F420-dependent | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 1e-15
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 7/97 (7%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF-ESIGVKVL-SDNNAVVE 70
+G IGAG M E++A+G+A +G + A N ++ A E +GVK N VE
Sbjct: 2 IGIIGAGNMGEALARGLAAAG----HEVVIANSRNPEKAAALAEELGVKATAVSNEEAVE 57
Query: 71 YSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAG 107
+DVV +VKP+ +V ++ LL + KL++S+ G
Sbjct: 58 EADVVFLAVKPEDAPEVLAELADLL-KGKLVISITNG 93
|
Length = 93 |
| >gnl|CDD|235812 PRK06476, PRK06476, pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 9e-15
Identities = 65/254 (25%), Positives = 109/254 (42%), Gaps = 15/254 (5%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYS 72
+GFIG G + E++ G+ S + I + ++ + R A V++ DN AVV+ S
Sbjct: 3 IGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRS 62
Query: 73 DVVVFSVKPQVVKDVAMQIRPLLSRK-KLLVSVAAGVKLKDLQEWTGHS-RFIRVMPNTP 130
DVV +V+PQ+ ++V +R L R + ++SV A L EW GH + +R +P
Sbjct: 63 DVVFLAVRPQIAEEV---LRALRFRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLPF 119
Query: 131 SAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRAD-EKLFDAITGLSGSGPAYIFLA 189
A + G TA + LF ++G D E+ +D + S Y F
Sbjct: 120 VAERK-------GVTAIYPPDPFVAALFDALGTAVECDSEEEYDLLAAASALMATY-FGI 171
Query: 190 IEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHP-GQLKDDVASPGGTTIAGIH 248
+E GL R+ A + A +S K L + ++ GG ++
Sbjct: 172 LETATGWLEEQGLKRQKARAYLAPLFASLAQDAVRSTKTDFSALSREFSTKGGLNEQVLN 231
Query: 249 ELEKSGFRGILMNA 262
+ + G L +A
Sbjct: 232 DFSRQGGYAALTDA 245
|
Length = 258 |
| >gnl|CDD|201664 pfam01210, NAD_Gly3P_dh_N, NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.003
Identities = 14/51 (27%), Positives = 32/51 (62%)
Query: 59 VKVLSDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVK 109
++ +D ++ +D++V +V Q +++V Q++ LLS +LVS+ G++
Sbjct: 57 LRATTDLEEAIKGADIIVLAVPSQALREVLKQLKGLLSPGAILVSLTKGIE 107
|
NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyzes the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain. Length = 157 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 274 | |||
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 100.0 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 100.0 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 100.0 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 100.0 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 100.0 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 100.0 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 100.0 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 100.0 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 100.0 | |
| KOG3124 | 267 | consensus Pyrroline-5-carboxylate reductase [Amino | 100.0 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 100.0 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 100.0 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 100.0 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 99.97 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 99.96 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.95 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 99.95 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.95 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 99.95 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.95 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.94 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 99.94 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 99.94 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.93 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 99.93 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 99.92 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 99.92 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.91 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 99.91 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 99.91 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.91 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.9 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.9 | |
| PF14748 | 107 | P5CR_dimer: Pyrroline-5-carboxylate reductase dime | 99.9 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 99.9 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 99.89 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.89 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 99.88 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.88 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.87 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 99.87 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 99.87 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.86 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 99.86 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.84 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.84 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 99.84 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 99.84 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.83 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 99.82 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.81 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 99.8 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.8 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 99.8 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.79 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.79 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 99.78 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.78 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 99.77 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 99.76 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.76 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 99.75 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 99.75 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.75 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 99.74 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 99.74 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.73 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.72 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 99.72 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.72 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 99.71 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 99.71 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 99.7 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 99.7 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 99.68 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 99.67 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 99.66 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.66 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 99.66 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 99.66 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 99.66 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 99.64 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 99.62 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 99.61 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 99.59 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 99.58 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.57 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 99.52 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 99.51 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 99.5 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 99.5 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 99.5 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 99.49 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 99.49 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 99.49 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 99.47 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 99.47 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 99.46 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 99.45 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 99.4 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 99.32 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.3 | |
| COG5495 | 289 | Uncharacterized conserved protein [Function unknow | 99.23 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 99.22 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 99.2 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 99.18 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 99.14 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 99.14 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 99.13 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 99.12 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 99.11 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 99.09 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 99.05 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 99.05 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 99.04 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 99.03 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 99.02 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 99.02 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 99.02 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 99.0 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 98.95 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 98.93 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 98.93 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 98.93 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.9 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 98.82 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 98.82 | |
| PLN02928 | 347 | oxidoreductase family protein | 98.78 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.77 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 98.77 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 98.76 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 98.75 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 98.74 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 98.73 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 98.72 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 98.68 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 98.68 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.67 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 98.66 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 98.66 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 98.64 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 98.62 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 98.61 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.59 | |
| KOG2305 | 313 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 98.57 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 98.56 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 98.55 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 98.53 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 98.52 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 98.51 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 98.51 | |
| TIGR01723 | 340 | hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr | 98.48 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 98.46 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 98.46 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 98.44 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 98.43 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 98.42 | |
| PRK00961 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 98.41 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 98.41 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 98.4 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 98.37 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 98.37 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 98.36 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 98.36 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 98.35 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 98.35 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 98.35 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 98.35 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 98.34 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 98.33 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.33 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 98.33 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 98.32 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 98.31 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 98.31 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 98.3 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 98.3 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 98.28 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 98.27 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 98.27 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 98.27 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 98.25 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 98.25 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 98.24 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 98.22 | |
| PLN02494 | 477 | adenosylhomocysteinase | 98.22 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 98.22 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 98.2 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 98.2 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 98.19 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 98.17 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 98.17 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.15 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 98.14 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 98.12 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.12 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 98.12 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 98.11 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 98.1 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 98.07 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 98.05 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 98.05 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 98.04 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 98.02 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 98.0 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 97.98 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 97.96 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 97.96 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 97.96 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 97.95 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 97.95 | |
| PRK02318 | 381 | mannitol-1-phosphate 5-dehydrogenase; Provisional | 97.93 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 97.91 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 97.91 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 97.88 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 97.87 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 97.86 | |
| PLN02602 | 350 | lactate dehydrogenase | 97.85 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 97.83 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 97.83 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 97.83 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 97.82 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 97.82 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 97.79 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 97.79 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 97.78 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 97.76 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 97.76 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 97.73 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 97.73 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 97.72 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 97.72 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 97.71 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.7 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 97.7 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 97.7 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 97.69 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 97.69 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 97.69 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 97.65 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 97.65 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 97.63 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 97.63 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 97.62 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.61 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.6 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 97.6 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 97.6 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 97.58 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 97.57 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.56 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 97.56 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 97.56 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.55 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 97.55 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 97.52 | |
| COG4074 | 343 | Mth H2-forming N5,N10-methylenetetrahydromethanopt | 97.52 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 97.47 | |
| KOG0068 | 406 | consensus D-3-phosphoglycerate dehydrogenase, D-is | 97.47 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 97.46 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 97.46 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.46 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 97.45 | |
| PLN00106 | 323 | malate dehydrogenase | 97.43 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 97.42 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 97.4 | |
| KOG2741 | 351 | consensus Dimeric dihydrodiol dehydrogenase [Carbo | 97.38 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 97.38 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 97.37 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 97.36 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.35 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 97.35 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 97.35 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 97.33 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 97.32 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.32 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 97.3 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 97.29 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 97.28 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.28 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 97.28 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 97.26 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 97.25 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 97.23 | |
| cd05298 | 437 | GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; | 97.23 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 97.2 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 97.19 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 97.19 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 97.18 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 97.17 | |
| PF10728 | 132 | DUF2520: Domain of unknown function (DUF2520); Int | 97.17 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 97.16 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 97.15 | |
| PF10100 | 429 | DUF2338: Uncharacterized protein conserved in bact | 97.14 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 97.14 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 97.11 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 97.07 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 97.07 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 97.07 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 97.05 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 97.03 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.01 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 97.0 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 96.98 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 96.98 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 96.98 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.97 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 96.95 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.94 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 96.94 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 96.92 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 96.89 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 96.89 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.85 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.85 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 96.83 | |
| PF03720 | 106 | UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen | 96.83 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 96.8 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 96.8 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 96.8 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 96.79 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 96.78 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.78 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.76 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.75 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 96.74 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 96.74 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 96.73 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 96.72 | |
| PF14833 | 122 | NAD_binding_11: NAD-binding of NADP-dependent 3-hy | 96.68 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 96.67 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 96.66 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 96.64 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 96.62 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 96.57 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 96.56 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.56 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 96.55 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 96.49 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 96.48 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 96.48 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.47 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 96.46 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.44 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 96.44 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.44 | |
| PRK10637 | 457 | cysG siroheme synthase; Provisional | 96.39 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.38 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 96.33 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 96.27 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 96.27 | |
| COG4408 | 431 | Uncharacterized protein conserved in bacteria [Fun | 96.27 | |
| PLN02775 | 286 | Probable dihydrodipicolinate reductase | 96.24 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 96.23 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 96.2 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 96.19 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 96.19 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 96.19 | |
| PRK07411 | 390 | hypothetical protein; Validated | 96.18 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 96.17 | |
| KOG1495 | 332 | consensus Lactate dehydrogenase [Energy production | 96.14 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 96.1 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 96.08 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 96.04 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 95.98 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 95.97 | |
| TIGR01082 | 448 | murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a | 95.97 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 95.97 | |
| TIGR01532 | 325 | E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas | 95.93 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 95.93 | |
| TIGR01381 | 664 | E1_like_apg7 E1-like protein-activating enzyme Gsa | 95.92 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 95.92 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.91 | |
| cd05296 | 419 | GH4_P_beta_glucosidase Glycoside Hydrolases Family | 95.91 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 95.9 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 95.88 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 95.88 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 95.88 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 95.85 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.82 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 95.82 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.81 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.79 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 95.79 | |
| PLN02477 | 410 | glutamate dehydrogenase | 95.78 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 95.78 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 95.77 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 95.77 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.76 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.76 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.72 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 95.69 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 95.68 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 95.67 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 95.66 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 95.65 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 95.65 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 95.65 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 95.65 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 95.64 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.6 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 95.59 | |
| PRK08223 | 287 | hypothetical protein; Validated | 95.57 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.57 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.56 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.56 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 95.55 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 95.54 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 95.54 | |
| COG0460 | 333 | ThrA Homoserine dehydrogenase [Amino acid transpor | 95.54 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 95.54 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 95.52 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.5 | |
| PRK08955 | 334 | glyceraldehyde-3-phosphate dehydrogenase; Validate | 95.48 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 95.45 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.45 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.43 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 95.42 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 95.42 | |
| PRK14168 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.4 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.39 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.38 | |
| COG1486 | 442 | CelF Alpha-galactosidases/6-phospho-beta-glucosida | 95.34 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.34 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 95.33 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 95.33 | |
| KOG2666 | 481 | consensus UDP-glucose/GDP-mannose dehydrogenase [C | 95.33 | |
| PRK06901 | 322 | aspartate-semialdehyde dehydrogenase; Provisional | 95.31 | |
| TIGR03855 | 229 | NAD_NadX aspartate dehydrogenase. Members of this | 95.31 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.27 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 95.23 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 95.23 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 95.22 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 95.21 | |
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 95.2 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 95.17 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 95.14 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 95.13 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 95.13 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 95.13 | |
| smart00846 | 149 | Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, | 95.12 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 95.12 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 95.11 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 95.09 | |
| TIGR03693 | 637 | ocin_ThiF_like putative thiazole-containing bacter | 95.09 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 95.06 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 95.06 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 95.06 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.06 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 95.05 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 95.03 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 95.03 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 95.01 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 94.96 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 94.96 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 94.94 | |
| PF00185 | 158 | OTCace: Aspartate/ornithine carbamoyltransferase, | 94.94 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 94.91 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 94.89 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 94.87 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 94.84 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 94.84 | |
| PRK14185 | 293 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.84 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 94.83 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 94.82 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 94.82 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 94.81 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 94.81 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 94.8 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 94.8 | |
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 94.77 | |
| PRK04663 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.76 | |
| TIGR03736 | 244 | PRTRC_ThiF PRTRC system ThiF family protein. A nov | 94.75 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 94.74 | |
| PRK05717 | 255 | oxidoreductase; Validated | 94.74 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 94.73 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 94.73 | |
| PRK03815 | 401 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.73 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 94.7 | |
| cd01488 | 291 | Uba3_RUB Ubiquitin activating enzyme (E1) subunit | 94.7 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 94.7 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 94.7 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 94.69 | |
| PLN02358 | 338 | glyceraldehyde-3-phosphate dehydrogenase | 94.69 | |
| COG0057 | 335 | GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt | 94.68 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 94.67 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 94.66 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.65 | |
| PRK14167 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.65 | |
| COG5322 | 351 | Predicted dehydrogenase [General function predicti | 94.65 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 94.63 | |
| TIGR02130 | 275 | dapB_plant dihydrodipicolinate reductase. This nar | 94.62 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 94.6 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 94.59 | |
| COG1832 | 140 | Predicted CoA-binding protein [General function pr | 94.59 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 94.57 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 94.57 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 94.57 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 94.56 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 94.55 |
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-55 Score=362.55 Aligned_cols=263 Identities=50% Similarity=0.806 Sum_probs=249.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCcccHHHHH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~ 88 (274)
++||||||+|+||.+|+.+|+++|.+++.+|++. +|++++.+.+.+ +|+...+++.+++.++|+||+||||+++++++
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~-~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavKPq~~~~vl 79 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVT-NRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVKPQDLEEVL 79 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEe-CCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeChHhHHHHH
Confidence 3689999999999999999999995566799999 999999976665 77766667778899999999999999999999
Q ss_pred HHhccccCCCCEEEEecCCCCHHHHHHhhCCCceEEEcCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCCeEEcC
Q 024016 89 MQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRAD 168 (274)
Q Consensus 89 ~~i~~~l~~~~~vis~~~g~~~~~l~~~~~~~~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~~~~~ 168 (274)
.++.+ +.++++|||+..|++++.+++++++.+++|+|||+|..++.|.+.++.+.+.+++..+.+..+|+.+|.+++++
T Consensus 80 ~~l~~-~~~~~lvISiaAGv~~~~l~~~l~~~~vvR~MPNt~a~vg~g~t~i~~~~~~~~~~~~~v~~l~~~~G~v~~v~ 158 (266)
T COG0345 80 SKLKP-LTKDKLVISIAAGVSIETLERLLGGLRVVRVMPNTPALVGAGVTAISANANVSEEDKAFVEALLSAVGKVVEVE 158 (266)
T ss_pred HHhhc-ccCCCEEEEEeCCCCHHHHHHHcCCCceEEeCCChHHHHcCcceeeecCccCCHHHHHHHHHHHHhcCCeEEec
Confidence 99998 77899999999999999999999888999999999999999999999988899999999999999999998888
Q ss_pred ccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHHHH
Q 024016 169 EKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIH 248 (274)
Q Consensus 169 e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~l~ 248 (274)
|+.+|.+++++||+|+|++.++++|.+++++.|++++++++++.+++.|+.+++.+++.+|..|+++|+||||+|+++|+
T Consensus 159 E~~~da~TaisGSgPAyv~~~iEal~~agv~~Gl~~~~A~~l~~~t~~Gaakll~e~~~~p~~Lr~~VtSPGGtTiagl~ 238 (266)
T COG0345 159 ESLMDAVTALSGSGPAYVFLFIEALADAGVRLGLPREEARELAAQTVAGAAKLLLESGEHPAELRDQVTSPGGTTIAGLR 238 (266)
T ss_pred hHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCcCCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024016 249 ELEKSGFRGILMNAVVAAAKRSRELS 274 (274)
Q Consensus 249 ~l~~~~~~~~~~~a~~~~~~r~~~~~ 274 (274)
.||+.+|+.++.++++++++|++||+
T Consensus 239 ~le~~g~~~~v~~av~aa~~r~~el~ 264 (266)
T COG0345 239 VLEEDGFRGAVIEAVEAAYKRSEELG 264 (266)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999986
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-54 Score=366.43 Aligned_cols=263 Identities=36% Similarity=0.625 Sum_probs=249.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCcccHHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAM 89 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~~ 89 (274)
+||+|||+|+||.+|+++|+++|+..+.+|++| +|++++++.+.+ .|+...+++.+++++||+||+|+||+++.++++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~-~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP~~~~~vl~ 81 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICS-DLNVSNLKNASDKYGITITTNNNEVANSADILILSIKPDLYSSVIN 81 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEE-CCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeChHHHHHHHH
Confidence 589999999999999999999986555689999 999999988876 788777788888899999999999999999999
Q ss_pred HhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCCeEEcC
Q 024016 90 QIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRAD 168 (274)
Q Consensus 90 ~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~~~~~ 168 (274)
++.+.++++++|||+.+|++++.++++++ ..+++|.|||.|..+++|.+.++++++.++++.+.++.+|+.+|.+++++
T Consensus 82 ~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~~~ 161 (272)
T PRK12491 82 QIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNEMVTEKDIKEVLNIFNIFGQTEVVN 161 (272)
T ss_pred HHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCCCCCHHHHHHHHHHHHcCCCEEEEc
Confidence 99988888899999999999999999997 45899999999999999999999988889999999999999999998889
Q ss_pred ccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHHHH
Q 024016 169 EKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIH 248 (274)
Q Consensus 169 e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~l~ 248 (274)
|+++|.+++++||+|+|++.+++++.+++++.|++++++++++.+++.|+.+++.+++.+|..++++++||||+|+++|+
T Consensus 162 E~~~d~~talsgsgPAf~~~~~eal~~a~v~~Gl~~~~A~~l~~~t~~G~a~ll~~~~~~p~~l~~~V~sPGGtT~~gl~ 241 (272)
T PRK12491 162 EKLMDVVTSISGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFAAQAVLGSAKMVLETGIHPGELKDMVCSPGGTTIEAVA 241 (272)
T ss_pred HHHhhhHHHhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024016 249 ELEKSGFRGILMNAVVAAAKRSRELS 274 (274)
Q Consensus 249 ~l~~~~~~~~~~~a~~~~~~r~~~~~ 274 (274)
.||+++++..+.++++++++|++||+
T Consensus 242 ~le~~~~~~~~~~av~aa~~r~~el~ 267 (272)
T PRK12491 242 TLEEKGLRTAIISAMKRCTQKSMEMS 267 (272)
T ss_pred HHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999985
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-49 Score=334.15 Aligned_cols=259 Identities=39% Similarity=0.646 Sum_probs=237.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v 87 (274)
|+.|||+|||+|+||++|+++|.+++..++.+++++ +|++++. +.....++.++++++|+||+|+||++++++
T Consensus 1 ~~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~-~~~~~~~------~~~~~~~~~~~~~~~D~Vilavkp~~~~~v 73 (260)
T PTZ00431 1 MENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYH-TPSKKNT------PFVYLQSNEELAKTCDIIVLAVKPDLAGKV 73 (260)
T ss_pred CCCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEE-CCChhcC------CeEEeCChHHHHHhCCEEEEEeCHHHHHHH
Confidence 456799999999999999999999886455579999 9887542 444556777888899999999999999999
Q ss_pred HHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCCeEE
Q 024016 88 AMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWR 166 (274)
Q Consensus 88 ~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~~~ 166 (274)
+.++.+++.+ ++|||+++|++.+.++++++ ..+++|++||+|..+++|.+.+++..+.+++..+.++.+|+.+|.+++
T Consensus 74 l~~i~~~l~~-~~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p~~~g~g~t~i~~~~~~~~~~~~~v~~l~~~~G~~~~ 152 (260)
T PTZ00431 74 LLEIKPYLGS-KLLISICGGLNLKTLEEMVGVEAKIVRVMPNTPSLVGQGSLVFCANNNVDSTDKKKVIDIFSACGIIQE 152 (260)
T ss_pred HHHHHhhccC-CEEEEEeCCccHHHHHHHcCCCCeEEEECCCchhHhcceeEEEEeCCCCCHHHHHHHHHHHHhCCcEEE
Confidence 9999987754 68899999999999999887 346899999999999999999998877888999999999999999988
Q ss_pred cCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHH
Q 024016 167 ADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAG 246 (274)
Q Consensus 167 ~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~ 246 (274)
++|+++|.+++++||+|+|++.+++++.+++++.|++++++++++.+++.|+++++.+++.+|..++++++||||+|+++
T Consensus 153 v~E~~~d~~ta~~gsgPA~~~~~~~al~~~~v~~Gl~~~~a~~l~~~~~~G~a~ll~~~~~~~~~l~~~v~spgG~T~~g 232 (260)
T PTZ00431 153 IKEKDMDIATAISGCGPAYVFLFIESLIDAGVKNGLNRDVSKNLVLQTILGSVHMVKASDQPVQQLKDDVCSPGGITIVG 232 (260)
T ss_pred EChHHcchhhhhcCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCChHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024016 247 IHELEKSGFRGILMNAVVAAAKRSRELS 274 (274)
Q Consensus 247 l~~l~~~~~~~~~~~a~~~~~~r~~~~~ 274 (274)
++.||++||+..+.++++++++|++||+
T Consensus 233 l~~le~~g~~~~~~~a~~aa~~r~~~l~ 260 (260)
T PTZ00431 233 LYTLEKHAFKYTVMDAVESACQKSKSMH 260 (260)
T ss_pred HHHHHHCChHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999986
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-48 Score=334.20 Aligned_cols=262 Identities=23% Similarity=0.331 Sum_probs=239.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHH-c-CceeccCchhhccCCCEEEEeeCcccHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFES-I-GVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-~~~~~l~~-~-g~~~~~~~~~~~~~aDiIil~v~~~~~~~v 87 (274)
+||+|||+|+||.+|+++|.++|..++.+|.+| +|++ ++.+.+.. . ++.+..+..++++++|+||+|+||+.+.++
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~-~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp~~~~~v 80 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILY-SSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPPLAVLPL 80 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEE-eCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCHHHHHHH
Confidence 589999999999999999999983333489999 7754 44555544 3 345556777788899999999999999999
Q ss_pred HHHhccccCCCCEEEEecCCCCHHHHHHhhCCCceEEEcCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCCeEEc
Q 024016 88 AMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRA 167 (274)
Q Consensus 88 ~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~~~~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~~~~ 167 (274)
+.++.++++++++|||+++|++.+.++++++..+++|.|||.|..+++|.+.++.+++.++++.+.++.+|+.+|.++++
T Consensus 81 l~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~~~vvR~MPN~~~~~g~g~t~~~~~~~~~~~~~~~v~~l~~~~G~~~~v 160 (277)
T PRK06928 81 LKDCAPVLTPDRHVVSIAAGVSLDDLLEITPGLQVSRLIPSLTSAVGVGTSLVAHAETVNEANKSRLEETLSHFSHVMTI 160 (277)
T ss_pred HHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCEEEEeCccHHHHhhhcEEEecCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 99999888888899999999999999999986689999999999999999999988888899999999999999999888
Q ss_pred CccchhhHHHhhcchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHH
Q 024016 168 DEKLFDAITGLSGSGPAYIFLAIEALADGGVAA-GLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAG 246 (274)
Q Consensus 168 ~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~ 246 (274)
+|+++|.+++++||+|+|++.+++++.+++++. |++++++++++.+++.|+++++.+++.+|..++++++||||+|++|
T Consensus 161 ~E~~~d~~tal~gsgPA~~~~~~~al~~a~~~~ggl~~~~a~~l~~~~~~G~a~l~~~~~~~p~~l~~~v~spgGtT~~g 240 (277)
T PRK06928 161 REENMDIASNLTSSSPGFIAAIFEEFAEAAVRNSSLSDEEAFQFLNFALAGTGKLLVEEDYTFSGTIERVATKGGITAEG 240 (277)
T ss_pred chhhCceeeeeecCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHhCCCCChHHHHH
Confidence 999999999999999999999999999999998 7999999999999999999999888999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024016 247 IHELEKSGFRGILMNAVVAAAKRSRELS 274 (274)
Q Consensus 247 l~~l~~~~~~~~~~~a~~~~~~r~~~~~ 274 (274)
|+.||+ +++..+.++++++++|+++|+
T Consensus 241 l~~le~-~~~~~~~~~~~~a~~r~~~~~ 267 (277)
T PRK06928 241 AEVIQA-QLPQFFDELLDRTQKKYASSK 267 (277)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 999997 999999999999999999874
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-48 Score=329.79 Aligned_cols=264 Identities=72% Similarity=1.093 Sum_probs=245.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAMQ 90 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~~~ 90 (274)
|||+|||+|+||.+|+++|+++|++++.+|++|.+|++++.+.+.+.|+.+.+++.++++++|+||+|+||+++++++.+
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~~~~~~~vl~~ 80 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVKPQVVKDVLTE 80 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEECcHHHHHHHHH
Confidence 68999999999999999999999755567777658999998888888998888888889999999999999999999999
Q ss_pred hccccCCCCEEEEecCCCCHHHHHHhhCCCceEEEcCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCCeEEcCcc
Q 024016 91 IRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEK 170 (274)
Q Consensus 91 i~~~l~~~~~vis~~~g~~~~~l~~~~~~~~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~~~~~e~ 170 (274)
+.+.++++++|||++++++.+.++++++..+++|.||++|...+.+.+.++.+...+++.++.++++|+.+|.+++++|+
T Consensus 81 l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~G~~~~~~e~ 160 (266)
T PLN02688 81 LRPLLSKDKLLVSVAAGITLADLQEWAGGRRVVRVMPNTPCLVGEAASVMSLGPAATADDRDLVATLFGAVGKIWVVDEK 160 (266)
T ss_pred HHhhcCCCCEEEEecCCCcHHHHHHHcCCCCEEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHHHHHHhCCCEEEeCHH
Confidence 98888889999999999999999988774479999999999999999988888777899999999999999997788999
Q ss_pred chhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHHHHHH
Q 024016 171 LFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHEL 250 (274)
Q Consensus 171 ~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~l~~l 250 (274)
.+|.+++++|++|+|++.+++++.|++++.|++++++++++.+++.|+.+++.+++.+|..+++.++||||+|+++++.|
T Consensus 161 ~~d~~~~~~g~g~a~~~~~~~a~~ea~~~~Gl~~~~a~~~~~~~~~gs~~l~~~~~~~~~~l~~~v~spgG~t~~~l~~l 240 (266)
T PLN02688 161 LLDAVTGLSGSGPAYIFLAIEALADGGVAAGLPRDVALSLAAQTVLGAAKMVLETGKHPGQLKDMVTSPGGTTIAGVHEL 240 (266)
T ss_pred HcchhHhhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred HhCCHHHHHHHHHHHHHHHHhhcC
Q 024016 251 EKSGFRGILMNAVVAAAKRSRELS 274 (274)
Q Consensus 251 ~~~~~~~~~~~a~~~~~~r~~~~~ 274 (274)
++.+++..+.++++++++|++||+
T Consensus 241 ~~~g~~~~~~~a~~~~~~r~~~~~ 264 (266)
T PLN02688 241 EKGGFRAALMNAVVAAAKRSRELS 264 (266)
T ss_pred HHCChHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999985
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-48 Score=330.02 Aligned_cols=266 Identities=31% Similarity=0.524 Sum_probs=244.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHH-cCceeccCchhhccCCCEEEEeeCcccHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~~~~ 85 (274)
|+.|||+|||+|+||.+|+++|+++|...+.+|++| +|++ ++.+.+.. .|++...++.++++++|+||+||||+++.
T Consensus 1 ~~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~-~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~~~~ 79 (279)
T PRK07679 1 MSIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVS-NRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPKDVA 79 (279)
T ss_pred CCCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEE-CCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHHHHH
Confidence 456799999999999999999999983334489999 9976 46677766 58887788888889999999999999999
Q ss_pred HHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCCe
Q 024016 86 DVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI 164 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~ 164 (274)
+++.++.+.++++++|||+++|++++.++++++ +.+++|.|||.|...+.+.+.+++++..+++.++.++++|+.+|..
T Consensus 80 ~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~~~~~~~~~~~~~v~~l~~~~G~~ 159 (279)
T PRK07679 80 EALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATAISPSKHATAEHIQTAKALFETIGLV 159 (279)
T ss_pred HHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEeeCCCCCHHHHHHHHHHHHhCCcE
Confidence 999999888888999999999999999998886 4689999999999999999999888777889999999999999998
Q ss_pred EEcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHH
Q 024016 165 WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTI 244 (274)
Q Consensus 165 ~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~ 244 (274)
++++|+.+|.+++++|++|+|++.+++++.|++++.|++++++++++.+++.|+..++.+++.+|..+++++++|+|+|+
T Consensus 160 ~~v~e~~~~~~~a~~Gsgpa~~~~~~eal~e~~~~~Gl~~~~a~~~~~~~~~gsa~~~~~~~~~~~~l~~~v~spgg~t~ 239 (279)
T PRK07679 160 SVVEEEDMHAVTALSGSGPAYIYYVVEAMEKAAKKIGLKEDVAKSLILQTMIGAAEMLKASEKHPSILRKEITSPGGTTE 239 (279)
T ss_pred EEeCHHHhhhHHHhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCchHHH
Confidence 88899999999999999999999999999999999999999999999999999999988888999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024016 245 AGIHELEKSGFRGILMNAVVAAAKRSRELS 274 (274)
Q Consensus 245 ~~l~~l~~~~~~~~~~~a~~~~~~r~~~~~ 274 (274)
.+|+.|++++|+..+.++++++++|++||+
T Consensus 240 ~gl~~l~~~~~~~~i~~a~~~a~~r~~~l~ 269 (279)
T PRK07679 240 AGIEVLQEHRFQQALISCITQATQRSHNLG 269 (279)
T ss_pred HHHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999985
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-45 Score=312.08 Aligned_cols=261 Identities=48% Similarity=0.752 Sum_probs=240.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCcccHHHHH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~ 88 (274)
+|||+|||+|+||++++..|.++|+ ...+|.+| +|++++.+.+.+ .|+.+..++.++++++|+||+|+|++++++++
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~-~~~~v~v~-~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~~~~~v~ 79 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGV-PAKDIIVS-DPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQVMEEVL 79 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCC-CcceEEEE-cCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHHHHHHHH
Confidence 4789999999999999999999983 22389999 999999888877 48877778888888999999999999999999
Q ss_pred HHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCCeEEc
Q 024016 89 MQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRA 167 (274)
Q Consensus 89 ~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~~~~ 167 (274)
+++.+.+ +++|||+++|++.+.++++++ +.+++++||++|...+.+.+.++++...+++..+.++.+|+.+|..+++
T Consensus 80 ~~l~~~~--~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P~~p~~~~~~~~~i~~~~~~~~~~~~~v~~l~~~lG~~~~~ 157 (267)
T PRK11880 80 SELKGQL--DKLVVSIAAGVTLARLERLLGADLPVVRAMPNTPALVGAGMTALTANALVSAEDRELVENLLSAFGKVVWV 157 (267)
T ss_pred HHHHhhc--CCEEEEecCCCCHHHHHHhcCCCCcEEEecCCchHHHcCceEEEecCCCCCHHHHHHHHHHHHhCCeEEEE
Confidence 9998876 578999999999999998887 5789999999999999999988888878899999999999999987555
Q ss_pred -CccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHH
Q 024016 168 -DEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAG 246 (274)
Q Consensus 168 -~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~ 246 (274)
+|+.+|.++++++++|+|++.+++++.+++.+.|++++++.+++.+++.|+.+++.+++.+|..+++.+++|||+|+++
T Consensus 158 ~~e~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~tpgG~t~~g 237 (267)
T PRK11880 158 DDEKQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLAAQTVLGAAKLLLESGEHPAELRDNVTSPGGTTIAA 237 (267)
T ss_pred CChHhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCcHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024016 247 IHELEKSGFRGILMNAVVAAAKRSRELS 274 (274)
Q Consensus 247 l~~l~~~~~~~~~~~a~~~~~~r~~~~~ 274 (274)
++.|++.|++..+.++++++++|+++|+
T Consensus 238 l~~l~~~g~~~~~~~a~~~~~~ra~~~~ 265 (267)
T PRK11880 238 LRVLEEKGLRAAVIEAVQAAAKRSKELG 265 (267)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999986
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-44 Score=305.30 Aligned_cols=259 Identities=21% Similarity=0.399 Sum_probs=236.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c-CceeccCchhhccCCCEEEEeeCcccHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I-GVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~-g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~ 88 (274)
|+|+|||+|+||++|+.+|.++|++.+.+|++| +|++++.+.+.+ . |+....++.+++.++|+||+|+||+++.+++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~-~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p~~~~~vl 79 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTIT-NRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKPLDIYPLL 79 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEE-CCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCHHHHHHHH
Confidence 479999999999999999999985445589999 999998888776 3 7777778888889999999999999999999
Q ss_pred HHhccccCCCCEEEEecCCCCHHHHHHhhCCCceEEEcCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCCeEEcC
Q 024016 89 MQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRAD 168 (274)
Q Consensus 89 ~~i~~~l~~~~~vis~~~g~~~~~l~~~~~~~~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~~~~~ 168 (274)
+++.++++++++|||+++|++.+.++++++ ..+++++|+.|...+.|.+.++.++..+++..+.++++|+.+|..++++
T Consensus 80 ~~l~~~l~~~~~iis~~ag~~~~~L~~~~~-~~~~r~~p~~~~~~~~G~t~~~~g~~~~~~~~~~~~~ll~~~G~~~~i~ 158 (273)
T PRK07680 80 QKLAPHLTDEHCLVSITSPISVEQLETLVP-CQVARIIPSITNRALSGASLFTFGSRCSEEDQQKLERLFSNISTPLVIE 158 (273)
T ss_pred HHHHhhcCCCCEEEEECCCCCHHHHHHHcC-CCEEEECCChHHHHhhccEEEeeCCCCCHHHHHHHHHHHHcCCCEEEEC
Confidence 999988888899999999999999998887 4789999999987888988877776677888899999999999888889
Q ss_pred ccchhhHHHhhcchHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHHH
Q 024016 169 EKLFDAITGLSGSGPAYIFLAIEALADGGVA-AGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 247 (274)
Q Consensus 169 e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~l 247 (274)
|+.++..+++++++|+|++.+++++.+++.+ .|++++++++++.+++.|+.+++.+++.+|..++++++||||+|++|+
T Consensus 159 e~~~~~~~~l~gs~pa~~~~~~~al~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l~~~~~~~~~~l~~~v~spgG~T~~gl 238 (273)
T PRK07680 159 EDITRVSSDIVSCGPAFFSYLLQRFIDAAVEETNISKEEATTLASEMLIGMGKLLEKGLYTLPTLQEKVCVKGGITGEGI 238 (273)
T ss_pred hHhcchhhhhccchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCChhHHHHH
Confidence 9999999999999999999999999999887 899999999999999999999998888999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHhh
Q 024016 248 HELEKSGFRGILMNAVVAAAKRSRE 272 (274)
Q Consensus 248 ~~l~~~~~~~~~~~a~~~~~~r~~~ 272 (274)
+.||+ +++..+.++++++.+|..+
T Consensus 239 ~~le~-~~~~~~~~~~~~~~~~~~~ 262 (273)
T PRK07680 239 KVLEE-EVGDMFHRLFQRTHEKFDE 262 (273)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 99999 7999999999999999654
|
|
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-44 Score=299.36 Aligned_cols=241 Identities=48% Similarity=0.742 Sum_probs=225.1
Q ss_pred hCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCcccHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 31 KSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 31 ~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
+.|.+.+.+|++| +|++++.+.+.+ .|+.+..++.++++++|+||+||||+++++++.++.+.+.++++|||+++|++
T Consensus 3 ~~~~~~~~~I~v~-~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~~~~ivS~~agi~ 81 (245)
T TIGR00112 3 KAGALAAYDIIVI-NRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGKDKLLISIAAGVT 81 (245)
T ss_pred CCCCCCCCeEEEE-cCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccCCCEEEEecCCCC
Confidence 3444456689999 999999888866 68888888888889999999999999999999999887777899999999999
Q ss_pred HHHHHHhhC-CCceEEEcCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCCeEEcCccchhhHHHhhcchHHHHHH
Q 024016 110 LKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFL 188 (274)
Q Consensus 110 ~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~~~~~e~~~~~~~a~~~~~~~~~~~ 188 (274)
++.++++++ +.+++|.|||.|..+++|.+.+++++..+++..+.++++|+.+|.+++++|+++|.+++++||+|+|++.
T Consensus 82 ~~~l~~~~~~~~~ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~E~~~~~~talsgsgPA~~~~ 161 (245)
T TIGR00112 82 LEKLSQLLGGTRRVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVELPEALMDAVTALSGSGPAYVFL 161 (245)
T ss_pred HHHHHHHcCCCCeEEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEECHHHcchHHhhccCcHHHHHH
Confidence 999999997 4689999999999999999999998888899999999999999999888899999999999999999999
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 024016 189 AIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAK 268 (274)
Q Consensus 189 ~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~l~~l~~~~~~~~~~~a~~~~~~ 268 (274)
+++++.+++++.|++++++++++.+++.|+++++.+++.+|++++++++||||+|++||+.|++.+|+..+.++++++++
T Consensus 162 ~~~al~~~~v~~Gl~~~~A~~lv~~~~~G~a~l~~~~~~~~~~l~~~v~spgGtT~~gl~~Le~~~~~~~~~~a~~aa~~ 241 (245)
T TIGR00112 162 FIEALADAGVKQGLPRELALELAAQTVKGAAKLLEESGEHPALLKDQVTSPGGTTIAGLAVLEEKGVRGAVIEAVEAAVR 241 (245)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHcCCCCcHHHHHHHHHHHHCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred HHhh
Q 024016 269 RSRE 272 (274)
Q Consensus 269 r~~~ 272 (274)
|++|
T Consensus 242 r~~e 245 (245)
T TIGR00112 242 RSRE 245 (245)
T ss_pred HhcC
Confidence 9975
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-44 Score=288.62 Aligned_cols=263 Identities=56% Similarity=0.828 Sum_probs=245.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH-HHHcCceeccCchhhccCCCEEEEeeCcccHHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA-FESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAM 89 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~-l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~~ 89 (274)
|+|||||.|+|..++++++...|.+..+++..+ ..+...... +...|+....++.+..+.+|++|++++|+.+++++.
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s-~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~svKp~~i~~vls 79 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWAS-VQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSVKPQVIESVLS 79 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeee-cCchhhhhhhhhcCCceeeechHHHHhhccceeEeecchhHHHHhh
Confidence 589999999999999999999999888888888 664443333 666888877777888999999999999999999999
Q ss_pred HhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCCeEEcC
Q 024016 90 QIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRAD 168 (274)
Q Consensus 90 ~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~~~~~ 168 (274)
++...+..+++++|+..|++++.+++.++ ..+++|.|||.|..+++|.+++..+.....++.+.++++++.+|.+..++
T Consensus 80 ~~~~~~~~~~iivS~aaG~tl~~l~~~l~~~~rviRvmpNtp~~v~eg~sv~~~g~~~~~~D~~l~~~ll~~vG~~~evp 159 (267)
T KOG3124|consen 80 EIKPKVSKGKIIVSVAAGKTLSSLESKLSPPTRVIRVMPNTPSVVGEGASVYAIGCHATNEDLELVEELLSAVGLCEEVP 159 (267)
T ss_pred cCccccccceEEEEEeecccHHHHHHhcCCCCceEEecCCChhhhhcCcEEEeeCCCcchhhHHHHHHHHHhcCcceeCc
Confidence 99887788999999999999999999887 57899999999999999999888888888999999999999999999999
Q ss_pred ccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHHHH
Q 024016 169 EKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIH 248 (274)
Q Consensus 169 e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~l~ 248 (274)
|+.+|++|+++|++|+|.+..+++|+|.+++.|++++.++++..+++.|+.+++.+++.||..|+|+++||+|+|+.++.
T Consensus 160 E~~iDavTgLsGSgPAy~f~~ieaLadGgVkmGlPr~lA~~laaqtllGAakMVl~s~qHP~~Lkd~V~SPgG~TI~glh 239 (267)
T KOG3124|consen 160 EKCIDAVTGLSGSGPAYVFVAIEALADGGVKMGLPRQLAYRLAAQTLLGAAKMVLASGQHPAQLKDDVCSPGGTTIYGLH 239 (267)
T ss_pred HHhhhHHhhccCCcHHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHHHhccCCcHHHhCCCCCCCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024016 249 ELEKSGFRGILMNAVVAAAKRSRELS 274 (274)
Q Consensus 249 ~l~~~~~~~~~~~a~~~~~~r~~~~~ 274 (274)
.||+++|+..+.+|++++..|++||+
T Consensus 240 ~LE~ggfRs~linaVeaa~~r~~el~ 265 (267)
T KOG3124|consen 240 ALEKGGFRSGLINAVEAATKRARELG 265 (267)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999986
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-42 Score=289.16 Aligned_cols=250 Identities=23% Similarity=0.343 Sum_probs=222.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c-CceeccCchhhccCCCEEEEeeCcccHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I-GVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~-g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~ 88 (274)
|||||||+|+||.+|+++|.+.|+ ....+.+| +|++++.+.+.+ . ++.++.++.++++++|+||+|+||+.+.+++
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~-~~~~i~v~-~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~p~~~~~vl 78 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPA-DVSEIIVS-PRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVRPQIAEEVL 78 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCC-ChheEEEE-CCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeCHHHHHHHH
Confidence 489999999999999999999986 33457899 999999888877 3 5777778888889999999999999999999
Q ss_pred HHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCCe-EE
Q 024016 89 MQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI-WR 166 (274)
Q Consensus 89 ~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~-~~ 166 (274)
.++. +.++++|||++++++.+.++++++ +.+++|.||++|...+.|.+.++++ .+.++++|+.+|.. +.
T Consensus 79 ~~l~--~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~~-------~~~~~~l~~~lG~~~~~ 149 (258)
T PRK06476 79 RALR--FRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYPP-------DPFVAALFDALGTAVEC 149 (258)
T ss_pred HHhc--cCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecCC-------HHHHHHHHHhcCCcEEE
Confidence 8873 568899999999999999999887 4589999999999988888887643 25899999999987 45
Q ss_pred cCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH-HHhcCCChHHHHHhcCCCCchHHH
Q 024016 167 ADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASM-VTKSGKHPGQLKDDVASPGGTTIA 245 (274)
Q Consensus 167 ~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~~ 245 (274)
.+|+++|.+++++ ++++|++.+++++.+++++.|++++++++++.+++.|+.++ +.+.+.+|..++++++||||+|++
T Consensus 150 ~~e~~~d~~~a~~-s~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l~~~~~~~~~~~l~~~v~spgGtT~~ 228 (258)
T PRK06476 150 DSEEEYDLLAAAS-ALMATYFGILETATGWLEEQGLKRQKARAYLAPLFASLAQDAVRSTKTDFSALSREFSTKGGLNEQ 228 (258)
T ss_pred CChHhccceeehh-ccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhCCCCCchHHH
Confidence 5688999999986 57888888999999999999999999999999999999999 577788999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 024016 246 GIHELEKSGFRGILMNAVVAAAKRSRE 272 (274)
Q Consensus 246 ~l~~l~~~~~~~~~~~a~~~~~~r~~~ 272 (274)
+|+.||+.+++..+.++++++++|++-
T Consensus 229 gl~~le~~~~~~~~~~a~~aa~~r~~~ 255 (258)
T PRK06476 229 VLNDFSRQGGYAALTDALDRVLRRING 255 (258)
T ss_pred HHHHHHHCChHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999863
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-41 Score=282.32 Aligned_cols=241 Identities=28% Similarity=0.481 Sum_probs=216.1
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC-CHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCcccHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r-~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~~~~ 85 (274)
|+.+||+|||+|+||.+++.+|.++|+....+++++ +| ++++.+.+.+ .++..+++..++++++|+||+|+|++.++
T Consensus 2 m~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~~~~ 80 (245)
T PRK07634 2 LKKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVS-NRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPSAHE 80 (245)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEE-CCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHHHHH
Confidence 456899999999999999999998874222347788 77 5778887776 67777778888889999999999999999
Q ss_pred HHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCCe
Q 024016 86 DVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI 164 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~ 164 (274)
+++.++.++++ +++|||+++|++.+.+++.++ +.+++|.|||.+..++.|.+.++...+.+++..+.++++|+.+|.+
T Consensus 81 ~v~~~l~~~~~-~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~~~~~~~~~~~~~~~~v~~lf~~~G~~ 159 (245)
T PRK07634 81 ELLAELSPLLS-NQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSISLYTMGQSVNETHKETLQLILKGIGTS 159 (245)
T ss_pred HHHHHHHhhcc-CCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhcCCeEEeeCCCCCHHHHHHHHHHHHhCCCE
Confidence 99999988765 679999999999999999887 3578999999999999999888877778899999999999999998
Q ss_pred EEcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHH
Q 024016 165 WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTI 244 (274)
Q Consensus 165 ~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~ 244 (274)
++++|++++.++++++|+|+|++.+++++.+++++.|++++++++++.+++.|+..++.+ +.+|+.++++++||||+|+
T Consensus 160 ~~~~e~~~~~~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~-~~~~~~l~~~v~spgG~T~ 238 (245)
T PRK07634 160 QLCTEEEVHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLVIQMISGSASMLEQ-TQDPANLREQVTTPGGSTA 238 (245)
T ss_pred EEECHHHcchHHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHhCCCCChHHH
Confidence 778899999999999999999999999999999999999999999999999999999875 6799999999999999999
Q ss_pred HHHHHHH
Q 024016 245 AGIHELE 251 (274)
Q Consensus 245 ~~l~~l~ 251 (274)
++++.||
T Consensus 239 ~gl~~l~ 245 (245)
T PRK07634 239 EGLKALY 245 (245)
T ss_pred HHHHHhC
Confidence 9999885
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-32 Score=233.00 Aligned_cols=220 Identities=18% Similarity=0.227 Sum_probs=189.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcc-cHHHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVKDV 87 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~-~~~~v 87 (274)
+.+||+|||+|+||.+++++|.++|+ +|+++.+++.++.+.+.+.|+.+. ++.+++++||+|++++||+ +...+
T Consensus 2 ~~kkIgiIG~G~mG~AiA~~L~~sG~----~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~~ADiVvLaVpp~~~~~~v 76 (314)
T TIGR00465 2 KGKTVAIIGYGSQGHAQALNLRDSGL----NVIVGLRKGGASWKKATEDGFKVG-TVEEAIPQADLIMNLLPDEVQHEVY 76 (314)
T ss_pred CcCEEEEEeEcHHHHHHHHHHHHCCC----eEEEEECcChhhHHHHHHCCCEEC-CHHHHHhcCCEEEEeCCcHhHHHHH
Confidence 45799999999999999999999998 787762555556666667788764 5778889999999999999 67777
Q ss_pred HHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHh-h------cCCceEEe-cCCCCCHHHHHHHHHHh
Q 024016 88 AMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSA-V------GEAATVMS-LGGTATEEDGELIGKLF 158 (274)
Q Consensus 88 ~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~-~------~~g~~~i~-~~~~~~~~~~~~v~~ll 158 (274)
+.++.+.++++. +||+..|+++..++..+| +.+++|.|||.|.+ + +.|++.++ .+.+.+.++.+.+..+|
T Consensus 77 ~~ei~~~l~~g~-iVs~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~~~~ 155 (314)
T TIGR00465 77 EAEIQPLLKEGK-TLGFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAIALAYA 155 (314)
T ss_pred HHHHHhhCCCCc-EEEEeCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHHHHHHH
Confidence 778888887774 899999999999988887 56899999999998 4 99998885 77777889999999999
Q ss_pred hhcCCe-------E---EcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024016 159 GSVGKI-------W---RADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKH 228 (274)
Q Consensus 159 ~~~g~~-------~---~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (274)
+.+|.. . +++|+++|..++++|++|+|++.+++++ ++.|++++.++.++.+++.++..++.++|.
T Consensus 156 ~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~eal----v~~G~~~e~A~~~~~~~~~g~~~l~~e~g~- 230 (314)
T TIGR00465 156 KAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTL----VEAGYQPELAYFETVHELKLIVDLIYEGGI- 230 (314)
T ss_pred HHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHH----HHcCCCHHHHHHHHHHHHHHHHHHHHHhcH-
Confidence 999976 3 6678899999999999999998887666 689999999999999999999999988775
Q ss_pred hHHHHHhcCCCC
Q 024016 229 PGQLKDDVASPG 240 (274)
Q Consensus 229 ~~~~~~~~~~~~ 240 (274)
..+++.+++..
T Consensus 231 -~~l~~~Vssta 241 (314)
T TIGR00465 231 -TGMRDRISNTA 241 (314)
T ss_pred -HHHHHHcCCHH
Confidence 58899998743
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-29 Score=208.47 Aligned_cols=250 Identities=16% Similarity=0.204 Sum_probs=187.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH-HHHHHHcCceeccCchhhccCCCEEEEeeC-cccHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-RDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVKDVA 88 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~~v~ 88 (274)
+||+|||+|.||.+||++|+++|| +|++| ||++++ .+.+.+.|+..+.++.|+++.+|+||+||+ ++++++|+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~----~v~v~-~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~ 75 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGH----EVTVY-NRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVL 75 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCC----EEEEE-eCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHH
Confidence 589999999999999999999999 99999 999999 555666899999999999999999999997 56799999
Q ss_pred H---HhccccCCCCEEEEecCCCCHHH---HHHhhC--CCceEEE-cCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhh
Q 024016 89 M---QIRPLLSRKKLLVSVAAGVKLKD---LQEWTG--HSRFIRV-MPNTPSAVGEAATVMSLGGTATEEDGELIGKLFG 159 (274)
Q Consensus 89 ~---~i~~~l~~~~~vis~~~g~~~~~---l~~~~~--~~~~~~~-~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~ 159 (274)
. .+...+++|+++|++ ++++++. +.+.+. +..++.. +...+.....|...+..| .+++.+++++++|+
T Consensus 76 ~g~~g~~~~~~~G~i~IDm-STisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimvG--G~~~~f~r~~pvl~ 152 (286)
T COG2084 76 FGENGLLEGLKPGAIVIDM-STISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVG--GDAEAFERAKPVLE 152 (286)
T ss_pred hCccchhhcCCCCCEEEEC-CCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEeC--CCHHHHHHHHHHHH
Confidence 4 577788899999987 5566543 333332 2334332 112222334555444433 27999999999999
Q ss_pred hcCC-eEEcCccchhhHHHhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHh
Q 024016 160 SVGK-IWRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDD 235 (274)
Q Consensus 160 ~~g~-~~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (274)
.+|+ ++++++......+.++ .+.++...+.++.|+ +++.|+|++.+++++..+..++..+-. . . ..+.+.
T Consensus 153 ~~g~~i~~~G~~G~G~~~Kl~--nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~~s~~~e~-~--~-~~m~~~ 226 (286)
T COG2084 153 AMGKNIVHVGPVGAGQAAKLA--NNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILEN-Y--G-PRMLEG 226 (286)
T ss_pred HhcCceEEECCCCchHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCChHHHh-h--c-chhhcC
Confidence 9997 5899988666666654 345566667777776 469999999999999998777765532 1 2 445566
Q ss_pred cCCCCchHHHHHHHH-------HhCCHHHHHHHHHHHHHHHHhhcC
Q 024016 236 VASPGGTTIAGIHEL-------EKSGFRGILMNAVVAAAKRSRELS 274 (274)
Q Consensus 236 ~~~~~g~t~~~l~~l-------~~~~~~~~~~~a~~~~~~r~~~~~ 274 (274)
.++|++.....++.| ++.++...+.....+.|+.+...|
T Consensus 227 ~~~p~F~v~~~~KDl~la~~~A~~~g~~lP~~~~~~~ly~~~~~~G 272 (286)
T COG2084 227 DFSPGFAVDLMLKDLGLALDAAKELGAPLPLTALAAELYAKAAAAG 272 (286)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcC
Confidence 689999888877665 344777778888888888776653
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=211.49 Aligned_cols=247 Identities=16% Similarity=0.185 Sum_probs=188.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce----eccCchhhccCCCEEEEeeCcccHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK----VLSDNNAVVEYSDVVVFSVKPQVVKD 86 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~----~~~~~~~~~~~aDiIil~v~~~~~~~ 86 (274)
+||+|||+|.||++|+++|.++|+ ++.+| ++++++.+.....+.. ..++..+++++||+||+|+|++.+.+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~----~v~i~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~~~~~ 75 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGP----DVFII-GYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVDATAA 75 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCC----CeEEE-EeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHHHHHH
Confidence 479999999999999999999998 88888 7776654443333332 23455677889999999999999999
Q ss_pred HHHHhcc-ccCCCCEEEEecCCCCHHH---HHHhhC-CCceEEEcCCcH-----------HhhcCCceEEecCCCCCHHH
Q 024016 87 VAMQIRP-LLSRKKLLVSVAAGVKLKD---LQEWTG-HSRFIRVMPNTP-----------SAVGEAATVMSLGGTATEED 150 (274)
Q Consensus 87 v~~~i~~-~l~~~~~vis~~~g~~~~~---l~~~~~-~~~~~~~~p~~~-----------~~~~~g~~~i~~~~~~~~~~ 150 (274)
++.++.+ .++++. +|+.+++++... +++.++ ..+++..||... ..+....+++++.+..+++.
T Consensus 76 vl~~l~~~~l~~~~-ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~ 154 (359)
T PRK06545 76 LLAELADLELKPGV-IVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDA 154 (359)
T ss_pred HHHHHhhcCCCCCc-EEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHH
Confidence 9999987 477775 555567776543 344433 346777776421 11233456778777778999
Q ss_pred HHHHHHHhhhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 024016 151 GELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHP 229 (274)
Q Consensus 151 ~~~v~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (274)
++.++++|+.+|.. +++++++||.++++++|+|+|++. +| +...+.+.+.+..+..++|+++++++. .+|
T Consensus 155 ~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~---al---~~~~~~~~~~~~~la~~gfrd~tRia~---~~p 225 (359)
T PRK06545 155 VAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILAS---SL---AARLAGEHPLALRLAAGGFRDITRIAS---SDP 225 (359)
T ss_pred HHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHH---HH---HHhhccCchHHHhhhcccccCCccccC---CCH
Confidence 99999999999976 679999999999999999998875 33 344566778888999999999999984 689
Q ss_pred HHHHHhcCCCCchHHHHHHHHHhC--CHHHHHHH----HHHHHHHHHhh
Q 024016 230 GQLKDDVASPGGTTIAGIHELEKS--GFRGILMN----AVVAAAKRSRE 272 (274)
Q Consensus 230 ~~~~~~~~~~~g~t~~~l~~l~~~--~~~~~~~~----a~~~~~~r~~~ 272 (274)
.+|++.+.+|++.+...|+.+++. .++..+.+ .+.+.++++++
T Consensus 226 ~~w~di~~~N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~~ 274 (359)
T PRK06545 226 GMWRDILESNAEALLDALDEWIEDLDRARDALESGDAEAIAELFDAGKA 274 (359)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999988888764 55555543 56666666654
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-27 Score=201.70 Aligned_cols=250 Identities=16% Similarity=0.201 Sum_probs=185.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce-eccCchhhccCCCEEEEeeCcccHHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK-VLSDNNAVVEYSDVVVFSVKPQVVKDVAM 89 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~-~~~~~~~~~~~aDiIil~v~~~~~~~v~~ 89 (274)
|||+|||+|.||.+|+..|.++|+ +|++| +|++++.+.+.+.|.. ...+..+.++++|+||+|+|++.+.++++
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~----~V~~~-d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~~~~~~~ 75 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGH----TVYGV-SRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGLLLPPSE 75 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHHHHHHHH
Confidence 589999999999999999999998 99999 9999998888877642 23333456789999999999999999999
Q ss_pred HhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHH---h--------hcCCceEEecCCCCCHHHHHHHHHH
Q 024016 90 QIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPS---A--------VGEAATVMSLGGTATEEDGELIGKL 157 (274)
Q Consensus 90 ~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~---~--------~~~g~~~i~~~~~~~~~~~~~v~~l 157 (274)
++.+.++++.+| +.+++++.+.++.... ..++++.||.... . ......++++.+..+++.++.++++
T Consensus 76 ~l~~~l~~~~ii-~d~~Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v~~l 154 (279)
T PRK07417 76 QLIPALPPEAIV-TDVGSVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAIVEEL 154 (279)
T ss_pred HHHHhCCCCcEE-EeCcchHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHHHHHH
Confidence 998888777655 5567777766665443 2368888874311 1 1223345667777788999999999
Q ss_pred hhhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHHHHH-cCCCH-HHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q 024016 158 FGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVA-AGLPR-ELALGLASQTVLGAASMVTKSGKHPGQLKD 234 (274)
Q Consensus 158 l~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~-~Gl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (274)
++.+|.. ++++++.||..+++++++|++++.. ++..... ..-+. +.+..+..++|++++|++. .+|++|.+
T Consensus 155 ~~~lG~~~v~~~~~~hD~~~a~~shlp~~~a~~---l~~~~~~~~~~~~~~~~~~~~~~gfrd~tRia~---~~p~~w~~ 228 (279)
T PRK07417 155 AVSLGSKIYTADPEEHDRAVALISHLPVMVSAA---LIQTCGTEKDPSVLKLAQNLASSGFADTSRVGG---GNPELGVM 228 (279)
T ss_pred HHHcCCEEEEcCHHHHHHHHHHHcchHHHHHHH---HHHHHhhcccchhhHHhhhhccCcccccccccC---CChHHHHH
Confidence 9999976 7899999999999999999987643 3222211 11111 2235788999999999874 68999999
Q ss_pred hcCCCCchHHHHHHHHHhC--CHHHHHH----HHHHHHHHHHhh
Q 024016 235 DVASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSRE 272 (274)
Q Consensus 235 ~~~~~~g~t~~~l~~l~~~--~~~~~~~----~a~~~~~~r~~~ 272 (274)
.+.++.....+.|+.+++. .++..+. +.+.+.++++++
T Consensus 229 i~~~N~~~i~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~~ 272 (279)
T PRK07417 229 MAEYNRAALLRSLASYRQSLDQLEELIEQENWSALEQKLEQTQE 272 (279)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999887777777776553 4444443 256666666654
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-27 Score=228.56 Aligned_cols=249 Identities=18% Similarity=0.220 Sum_probs=197.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce--eccCchhhccCCCEEEEeeCcccHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK--VLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~--~~~~~~~~~~~aDiIil~v~~~~~~~v~ 88 (274)
.||+|||+|+||.+++++|.+.|+ ..+|++| +|++++.+.+.+.|+. ..++..++++++|+||+|+|++.+++++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~--~~~V~~~-d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~~~~~vl 80 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGL--AREVVAV-DRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVLAMEKVL 80 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCC--CCEEEEE-ECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHHHHHHHH
Confidence 689999999999999999999984 1279999 9999988887777764 3345667788999999999999999999
Q ss_pred HHhccccCCCCEEEEecCCCC---HHHHHHhhCCCceEEEcCCcHHhh--------------cCCceEEecCCCCCHHHH
Q 024016 89 MQIRPLLSRKKLLVSVAAGVK---LKDLQEWTGHSRFIRVMPNTPSAV--------------GEAATVMSLGGTATEEDG 151 (274)
Q Consensus 89 ~~i~~~l~~~~~vis~~~g~~---~~~l~~~~~~~~~~~~~p~~~~~~--------------~~g~~~i~~~~~~~~~~~ 151 (274)
.++.++++++.+ |+..++++ .+.+++.++. ..+|++|++|... ..+..++++....+++..
T Consensus 81 ~~l~~~~~~~~i-i~d~~svk~~~~~~l~~~~~~-~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~~ 158 (735)
T PRK14806 81 ADLKPLLSEHAI-VTDVGSTKGNVVDAARAVFGE-LPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAAL 158 (735)
T ss_pred HHHHHhcCCCcE-EEEcCCCchHHHHHHHHhccc-cCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHHH
Confidence 999988877754 55556666 5566666653 3567888888541 122346677667788899
Q ss_pred HHHHHHhhhcCCe-EEcCccchhhHHHhhcchHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 024016 152 ELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPA-YIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHP 229 (274)
Q Consensus 152 ~~v~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~-~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (274)
+.++++|+.+|.. +++++++||.++++++|+|+ |.+.+++++. +.|.. +.+.++..++|+++++++ +.+|
T Consensus 159 ~~~~~l~~~~G~~~~~~~~~~hD~~~a~~~~~ph~~~~~l~~~l~----~~~~~-~~~~~~a~~~f~~~tRia---~~~p 230 (735)
T PRK14806 159 ARVDRLWRAVGADVLHMDVAHHDEVLAATSHLPHLLAFSLVDQLA----NREDN-LDIFRYAAGGFRDFTRIA---ASDP 230 (735)
T ss_pred HHHHHHHHHcCCEEEEcCHHHHhHHHHHhcchHHHHHHHHHHHHh----hcCCh-hHHHhhhccchhcccccc---cCCH
Confidence 9999999999975 78999999999999999998 5555555554 34432 356789999999999987 4689
Q ss_pred HHHHHhcCCCCchHHHHHHHHHh--CCHHHHHHH----HHHHHHHHHhh
Q 024016 230 GQLKDDVASPGGTTIAGIHELEK--SGFRGILMN----AVVAAAKRSRE 272 (274)
Q Consensus 230 ~~~~~~~~~~~g~t~~~l~~l~~--~~~~~~~~~----a~~~~~~r~~~ 272 (274)
..|.+.+.+|++++.++|+.+++ .+|+..+.+ .+.+.++++++
T Consensus 231 ~~~~di~~~n~~~~~~~l~~~~~~l~~~~~~l~~~d~~~~~~~~~~~~~ 279 (735)
T PRK14806 231 VMWHDIFLANKEAVLRALDHFRDDLDALRAAIEAGDGHALLGVFTRARA 279 (735)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999999999988 578887773 66777776654
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-26 Score=196.84 Aligned_cols=248 Identities=17% Similarity=0.241 Sum_probs=186.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce-eccCchhhccCCCEEEEeeCcccHHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK-VLSDNNAVVEYSDVVVFSVKPQVVKDVAM 89 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~-~~~~~~~~~~~aDiIil~v~~~~~~~v~~ 89 (274)
|||+|||+|+||++|+.+|.++|+ ..+|++| +|++++.+.+.+.|+. ...++.++. ++|+||+|||++.+.+++.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~--~~~v~~~-d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~~~~~~~ 76 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGL--ISKVYGY-DHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDAIIEILP 76 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCC--CCEEEEE-cCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHHHHHHHH
Confidence 489999999999999999999986 2268899 9999998888777763 344566654 5999999999999999999
Q ss_pred HhccccCCCCEEEEecCCCCHHHHHHhhC---CCceEEEcCCc------HHh----hcCCc-eEEecCCCCCHHHHHHHH
Q 024016 90 QIRPLLSRKKLLVSVAAGVKLKDLQEWTG---HSRFIRVMPNT------PSA----VGEAA-TVMSLGGTATEEDGELIG 155 (274)
Q Consensus 90 ~i~~~l~~~~~vis~~~g~~~~~l~~~~~---~~~~~~~~p~~------~~~----~~~g~-~~i~~~~~~~~~~~~~v~ 155 (274)
++.+ ++++++|+++ +++... +.+.+. ..++++.||+. |.. ..+|. .++++.+..+++.++.++
T Consensus 77 ~l~~-l~~~~iv~d~-gs~k~~-i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~v~ 153 (275)
T PRK08507 77 KLLD-IKENTTIIDL-GSTKAK-IIESVPKHIRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQERAK 153 (275)
T ss_pred HHhc-cCCCCEEEEC-ccchHH-HHHHHHHhcCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHHHHHH
Confidence 9988 8889888874 444333 322222 24688999973 322 12443 456666666788899999
Q ss_pred HHhhhcCC-eEEcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q 024016 156 KLFGSVGK-IWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKD 234 (274)
Q Consensus 156 ~ll~~~g~-~~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (274)
++|+.+|. +++++++.||..++++++.|++++. ++++... .+.+.+....+..++|+++++++. .+|.+|.+
T Consensus 154 ~l~~~~G~~~~~~~~~~hD~~~a~vs~lph~~a~---~l~~~~~-~~~~~~~~~~~~~~gfrd~tria~---~~p~l~~~ 226 (275)
T PRK08507 154 EIFSGLGMRIVYMDAKEHDLHAAYISHLPHIISF---ALANTVL-KEEDERNIFDLAGGGFRSMSRLAK---SSPAMWSD 226 (275)
T ss_pred HHHHHhCCEEEEeCHHHHHHHHHHHhHHHHHHHH---HHHHHHH-hcCChHHHHhhcccchhhhhhccc---CCHHHHHH
Confidence 99999995 4889999999999999999875543 4555443 466777778999999999999874 68999999
Q ss_pred hcCCCCchHHHHHHHHHhC--CHHHHHH----HHHHHHHHHHhh
Q 024016 235 DVASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSRE 272 (274)
Q Consensus 235 ~~~~~~g~t~~~l~~l~~~--~~~~~~~----~a~~~~~~r~~~ 272 (274)
.+.++.......|+.+++. .+...+. +.+.+.++++++
T Consensus 227 i~~~N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~~~~~~~~~~~ 270 (275)
T PRK08507 227 IFKQNKENVLEAIDEFIKELEQFKQLIENEDWEELEEWMEQANK 270 (275)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999887777776666553 3444442 355555655554
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-26 Score=188.56 Aligned_cols=251 Identities=19% Similarity=0.207 Sum_probs=179.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccHHHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVKDV 87 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~~v 87 (274)
+.++|||||+|+||++|+.+|+++|| .|+|| ||+.++.+.|++.|+++.++|.|+++.||+||.||| |.+++++
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G~----kVtV~-dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v 108 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAGY----KVTVY-DRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDV 108 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHcCC----EEEEE-eCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHH
Confidence 46799999999999999999999999 99999 999999999999999999999999999999999997 6678888
Q ss_pred HHH---hccccCCCCEE-EEecCCCCHH---HHHHhhC--CCceEEEc-CCcHHhhcCCceEEecCCCCCHHHHHHHHHH
Q 024016 88 AMQ---IRPLLSRKKLL-VSVAAGVKLK---DLQEWTG--HSRFIRVM-PNTPSAVGEAATVMSLGGTATEEDGELIGKL 157 (274)
Q Consensus 88 ~~~---i~~~l~~~~~v-is~~~g~~~~---~l~~~~~--~~~~~~~~-p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~l 157 (274)
+.+ +...+++++.. |+. ++++++ ++++.+. +.+++..- ........+|...+..+ .+++.++++.++
T Consensus 109 ~~g~~Gvl~g~~~g~~~~vDm-STidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~Ltimag--Gde~~~~~~~~~ 185 (327)
T KOG0409|consen 109 LLGKSGVLSGIRPGKKATVDM-STIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTLTIMAG--GDEALFEAASPV 185 (327)
T ss_pred hcCCCcceeeccCCCceEEec-cccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeEEEEec--CcHHHHHHHHHH
Confidence 854 44455677666 554 556654 4444433 34444321 11112234666655554 489999999999
Q ss_pred hhhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Q 024016 158 FGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLK 233 (274)
Q Consensus 158 l~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (274)
|+.+|+. +++++........++ .+-.+...+.+++|+ +.+.|++...+.+++..+-..+..+ +. .-| .+.
T Consensus 186 ~~~mGk~~~~~G~~GnG~~~Kl~--nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G~~~S~~~-~~--~~p-~m~ 259 (327)
T KOG0409|consen 186 FKLMGKNVVFLGGVGNGQAAKLC--NNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTGRCWSSMF-YN--PVP-GML 259 (327)
T ss_pred HHHhcceEEEecccCchHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCcccHHH-hC--cCc-hhh
Confidence 9999965 888876544444443 233444445556665 5699999999999998865555444 32 233 455
Q ss_pred HhcCCCCchHHHHHHHH-------HhCCHHHHHHHHHHHHHHHHhhc
Q 024016 234 DDVASPGGTTIAGIHEL-------EKSGFRGILMNAVVAAAKRSREL 273 (274)
Q Consensus 234 ~~~~~~~g~t~~~l~~l-------~~~~~~~~~~~a~~~~~~r~~~~ 273 (274)
+..+.|++.+....+.| ++.+..-.+....++.|++..+.
T Consensus 260 k~dy~p~f~~~~m~KDLgla~~~a~~~~~~~P~~slA~qly~~~~a~ 306 (327)
T KOG0409|consen 260 KGDYNPGFALKLMVKDLGLALNAAESVKVPMPLGSLAHQLYKSMKAL 306 (327)
T ss_pred cCCCCCcchHHHHHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHhc
Confidence 66689999888766555 22244555666777777776654
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-26 Score=204.62 Aligned_cols=248 Identities=15% Similarity=0.214 Sum_probs=190.9
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCcccHHHHH
Q 024016 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 11 ~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~ 88 (274)
|||+||| +|.||.+++..|.+.|+ +|++| +|++++...+.. .|+...++..+.+.++|+||+|+|++.+.+++
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~----~V~v~-~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~~~~~vl 75 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF----EVIVT-GRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPINVTEDVI 75 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC----EEEEE-ECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHHHHHHHH
Confidence 5899997 89999999999999998 99999 999887655444 68777677778889999999999999999999
Q ss_pred HHhccccCCCCEEEEecC--CCCHHHHHHhhC-CCceEEEcCC----cHHhhcCCceEEecCCCCCHHHHHHHHHHhhhc
Q 024016 89 MQIRPLLSRKKLLVSVAA--GVKLKDLQEWTG-HSRFIRVMPN----TPSAVGEAATVMSLGGTATEEDGELIGKLFGSV 161 (274)
Q Consensus 89 ~~i~~~l~~~~~vis~~~--g~~~~~l~~~~~-~~~~~~~~p~----~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~ 161 (274)
.++.+.++++++|+++++ +...+.+++.++ +.++++.||. .|.. .....+++++++.+++.++.++++|+.+
T Consensus 76 ~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~-~g~~~il~p~~~~~~~~~~~v~~ll~~~ 154 (437)
T PRK08655 76 KEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSL-KGQVVILTPTEKRSNPWFDKVKNFLEKE 154 (437)
T ss_pred HHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCccc-CCCEEEEecCCCCCHHHHHHHHHHHHHc
Confidence 999999999999998765 233456666665 4578888864 2221 2223455666656788899999999999
Q ss_pred CCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH----HHHHHhcCCChHHHHHhc
Q 024016 162 GKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGA----ASMVTKSGKHPGQLKDDV 236 (274)
Q Consensus 162 g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 236 (274)
|.. +++++++||.+++.+++.|++++. +++.++.+.|++.+++..+..++|+.. .+++ +.+|.+|.+..
T Consensus 155 G~~v~~~~~e~HD~~~a~vs~lph~~a~---al~~~l~~~g~~~~~~~~~a~~~frd~~~~~tRIa---~~~p~lw~dI~ 228 (437)
T PRK08655 155 GARVIVTSPEEHDRIMSVVQGLTHFAYI---SIASTLKRLGVDIKESRKFASPIYELMIDIIGRIL---GQNPYLYASIQ 228 (437)
T ss_pred CCEEEECCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHcCCCHHHHHhhcChhhHHHHHHHHHHh---cCCHHHHHHHH
Confidence 965 778999999999999999987654 455566778999999999999999986 6665 46899999998
Q ss_pred CCCCchHHHHHHHHHhC--CHHHHHH----HHHHHHHHHHh
Q 024016 237 ASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSR 271 (274)
Q Consensus 237 ~~~~g~t~~~l~~l~~~--~~~~~~~----~a~~~~~~r~~ 271 (274)
.++. .....++.+.+. .++..+. +.+.+.+++++
T Consensus 229 ~~N~-~~~~~l~~~~~~l~~l~~~l~~~D~~~l~~~~~~a~ 268 (437)
T PRK08655 229 MNNP-QIPEIHETFIKECEELSELVKNGDREEFVERMKEAA 268 (437)
T ss_pred HhCH-HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8876 566666665543 3333333 24455555444
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=193.81 Aligned_cols=259 Identities=15% Similarity=0.219 Sum_probs=185.7
Q ss_pred CCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCc--eeccCchhhccCCCEEEEeeCc
Q 024016 4 FPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV--KVLSDNNAVVEYSDVVVFSVKP 81 (274)
Q Consensus 4 ~~~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~--~~~~~~~~~~~~aDiIil~v~~ 81 (274)
||.++ .+||+|||+|.||.+++..|.+.|+ ..+|++| +|++++.+.+.+.|+ ....+..+.++++|+||+|+|+
T Consensus 1 ~~~~~-~~~I~IIG~G~mG~sla~~l~~~g~--~~~V~~~-dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~ 76 (307)
T PRK07502 1 MSAPL-FDRVALIGIGLIGSSLARAIRRLGL--AGEIVGA-DRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPV 76 (307)
T ss_pred CCccC-CcEEEEEeeCHHHHHHHHHHHhcCC--CcEEEEE-ECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCH
Confidence 44553 4699999999999999999999884 1279999 999998888877774 3445667778899999999999
Q ss_pred ccHHHHHHHhccccCCCCEEEEecCCCCHHHHHH---hhC-CCceEEEcCCcHHh-----------hcCCceEEecCCCC
Q 024016 82 QVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQE---WTG-HSRFIRVMPNTPSA-----------VGEAATVMSLGGTA 146 (274)
Q Consensus 82 ~~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~---~~~-~~~~~~~~p~~~~~-----------~~~g~~~i~~~~~~ 146 (274)
....+++.++.+.++++++|++ .++++.+.++. .++ +.+++..||..... ......++++....
T Consensus 77 ~~~~~v~~~l~~~l~~~~iv~d-vgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~ 155 (307)
T PRK07502 77 GASGAVAAEIAPHLKPGAIVTD-VGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGT 155 (307)
T ss_pred HHHHHHHHHHHhhCCCCCEEEe-CccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCC
Confidence 9999999988888888876665 46666554433 333 23455555542111 01122345565556
Q ss_pred CHHHHHHHHHHhhhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhc
Q 024016 147 TEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKS 225 (274)
Q Consensus 147 ~~~~~~~v~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~ 225 (274)
+++.++.++++++.+|.. +++++++||..+++++++|++++..+..... .....+.+....+..++|+++.|++.
T Consensus 156 ~~~~~~~~~~l~~~lG~~~~~~~~~~hD~~~A~~s~lph~~a~~l~~~~~--~~~~~~~~~~~~~~~~gfrd~tRia~-- 231 (307)
T PRK07502 156 DPAAVARLTAFWRALGARVEEMDPEHHDLVLAITSHLPHLIAYTIVGTAD--DLERVTESEVIKYSASGFRDFTRIAA-- 231 (307)
T ss_pred CHHHHHHHHHHHHHcCCEEEEcCHHHHhHHHHHHhhHHHHHHHHHHHHHh--hhcccchHHHHHhccccccccccccc--
Confidence 788899999999999975 7889999999999999999998765432221 11233344456788899999888864
Q ss_pred CCChHHHHHhcCCCCchHHHHHHHHHhC--CHHHHHH----HHHHHHHHHHhh
Q 024016 226 GKHPGQLKDDVASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSRE 272 (274)
Q Consensus 226 ~~~~~~~~~~~~~~~g~t~~~l~~l~~~--~~~~~~~----~a~~~~~~r~~~ 272 (274)
.+|++|.+.+.++.......|+.+++. .++..+. +.+.+.++++++
T Consensus 232 -~~~~~w~~i~~~N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~~ 283 (307)
T PRK07502 232 -SDPTMWRDVFLHNKDAVLEMLGRFTEDLAALQRAIRWGDGDALFDLFTRTRA 283 (307)
T ss_pred -CChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 589999999998887777777777653 4444443 255666665554
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=187.10 Aligned_cols=251 Identities=18% Similarity=0.166 Sum_probs=178.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcc-cHHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVKDVAM 89 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~-~~~~v~~ 89 (274)
+||+|||+|+||.+|+.+|.++|| +|++| ||++++.+.+.+.|+....++.++++++|+||+|+|++ ++++++.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~----~V~v~-d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~ 76 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGH----QLQVF-DVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLF 76 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCC----eEEEE-cCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHc
Confidence 489999999999999999999999 99999 99999999998888877788888899999999999987 4788874
Q ss_pred ---HhccccCCCCEEEEecCCCCH--HHHHHhhC--CCceEEE-cCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhc
Q 024016 90 ---QIRPLLSRKKLLVSVAAGVKL--KDLQEWTG--HSRFIRV-MPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSV 161 (274)
Q Consensus 90 ---~i~~~l~~~~~vis~~~g~~~--~~l~~~~~--~~~~~~~-~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~ 161 (274)
++.+.+++++++|++++..+. ..+.+.+. +..++.+ +...+.....|...++.| .+++.+++++++|+.+
T Consensus 77 ~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~g--g~~~~~~~~~p~l~~~ 154 (296)
T PRK15461 77 GENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAG--GTAEQVERATPILMAM 154 (296)
T ss_pred CcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEEC--CCHHHHHHHHHHHHHH
Confidence 355667889999987554432 34444443 3344432 112343444565544433 2789999999999999
Q ss_pred CC-eEEcCccchhhHHHhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcC
Q 024016 162 GK-IWRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVA 237 (274)
Q Consensus 162 g~-~~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (274)
|. .+++++..-...+.++ .+.+.......+.|+ +++.|+|++.+.+++..+..++..+.. ..+..+.+..+
T Consensus 155 g~~~~~~g~~G~g~~~Kl~--~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~ 229 (296)
T PRK15461 155 GNELINAGGPGMGIRVKLI--NNYMSIALNALSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTT---TWPNKVLKGDL 229 (296)
T ss_pred cCCeEeeCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccChHHHc---cccchhccCCC
Confidence 96 4788765433334332 233333334445554 569999999999999877666554432 23334555667
Q ss_pred CCCchHHHHHHH-------HHhCCHHHHHHHHHHHHHHHHhhc
Q 024016 238 SPGGTTIAGIHE-------LEKSGFRGILMNAVVAAAKRSREL 273 (274)
Q Consensus 238 ~~~g~t~~~l~~-------l~~~~~~~~~~~a~~~~~~r~~~~ 273 (274)
+|+++.....+. .++.+++..+.++..+.|+++.+.
T Consensus 230 ~~~f~~~~~~KD~~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~ 272 (296)
T PRK15461 230 SPAFMIDLAHKDLGIALDVANQLHVPMPLGAASREVYSQARAA 272 (296)
T ss_pred CCCcchHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhc
Confidence 888866665444 355688888889999999888764
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-24 Score=185.14 Aligned_cols=248 Identities=16% Similarity=0.178 Sum_probs=176.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcc-cHHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVKDVAM 89 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~-~~~~v~~ 89 (274)
|||||||+|+||.+|+++|.++|| +|++| +|++. .+.+.+.|+....++.++++++|+||+|+|++ ++++++.
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~----~v~v~-~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~ 74 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGH----QLHVT-TIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLF 74 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC----eEEEE-eCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHc
Confidence 489999999999999999999999 99999 99975 56777788888888889899999999999865 6788874
Q ss_pred H---hccccCCCCEEEEecCCCCHHH---HHHhhC--CCceEEEcCC--cHHhhcCCceEEecCCCCCHHHHHHHHHHhh
Q 024016 90 Q---IRPLLSRKKLLVSVAAGVKLKD---LQEWTG--HSRFIRVMPN--TPSAVGEAATVMSLGGTATEEDGELIGKLFG 159 (274)
Q Consensus 90 ~---i~~~l~~~~~vis~~~g~~~~~---l~~~~~--~~~~~~~~p~--~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~ 159 (274)
+ +.+.+.+|+++|++ ++++++. +.+.+. +..++.. |- .+.....|...++.+ .+++.+++++++|+
T Consensus 75 ~~~g~~~~~~~g~ivvd~-sT~~p~~~~~~~~~~~~~G~~~vda-PVsGg~~~a~~g~l~~~~g--G~~~~~~~~~p~l~ 150 (292)
T PRK15059 75 GENGCTKASLKGKTIVDM-SSISPIETKRFARQVNELGGDYLDA-PVSGGEIGAREGTLSIMVG--GDEAVFERVKPLFE 150 (292)
T ss_pred CCcchhccCCCCCEEEEC-CCCCHHHHHHHHHHHHHcCCCEEEe-cCCCCHHHHhcCcEEEEEc--CCHHHHHHHHHHHH
Confidence 3 55567789999987 4455543 334332 3455543 42 333344565443333 27899999999999
Q ss_pred hcCC-eEEcCccchhhHHHhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHh
Q 024016 160 SVGK-IWRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDD 235 (274)
Q Consensus 160 ~~g~-~~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (274)
.+|. .+++++......+.++ .+.+....+.++.|+ +++.|+|++.+++++..+...+. ++.. ..+ .+.+.
T Consensus 151 ~~g~~~~~~G~~G~g~~~Kl~--~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~-~~~~--~~~-~~~~~ 224 (292)
T PRK15059 151 LLGKNITLVGGNGDGQTCKVA--NQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASSR-ILEV--HGE-RMIKR 224 (292)
T ss_pred HHcCCcEEeCCccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcccCH-HHHh--hch-hhhcC
Confidence 9996 4888886555555554 244444445666665 46899999999998876654443 3332 123 45555
Q ss_pred cCCCCchHHHHHHH-------HHhCCHHHHHHHHHHHHHHHHhhcC
Q 024016 236 VASPGGTTIAGIHE-------LEKSGFRGILMNAVVAAAKRSRELS 274 (274)
Q Consensus 236 ~~~~~g~t~~~l~~-------l~~~~~~~~~~~a~~~~~~r~~~~~ 274 (274)
.+.|+++.....+. .++.++...+.++..+.|+.+.+.+
T Consensus 225 ~~~~~f~l~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 270 (292)
T PRK15059 225 TFNPGFKIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANG 270 (292)
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcC
Confidence 56788777665444 4566888888889999898887653
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=186.43 Aligned_cols=245 Identities=16% Similarity=0.128 Sum_probs=183.1
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhc-cCCCEEEEeeCcccHHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVV-EYSDVVVFSVKPQVVKD 86 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~-~~aDiIil~v~~~~~~~ 86 (274)
+..+||+|||+|.||.++++.|.+.|+ +|++| +|++.. +...+.|+...++..+++ .++|+||+|||++.+.+
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~----~V~~~-d~~~~~-~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~~~~~ 107 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGH----TVLAT-SRSDYS-DIAAELGVSFFRDPDDFCEEHPDVVLLCTSILSTEA 107 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCC----EEEEE-ECccHH-HHHHHcCCeeeCCHHHHhhCCCCEEEEecCHHHHHH
Confidence 456899999999999999999999998 99999 888643 334447777666777765 47999999999999999
Q ss_pred HHHHh-ccccCCCCEEEEecC--CCCHHHHHHhhC-CCceEEEcCCcHHhhcC----CceEEecC-----CCCCHHHHHH
Q 024016 87 VAMQI-RPLLSRKKLLVSVAA--GVKLKDLQEWTG-HSRFIRVMPNTPSAVGE----AATVMSLG-----GTATEEDGEL 153 (274)
Q Consensus 87 v~~~i-~~~l~~~~~vis~~~--g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~----g~~~i~~~-----~~~~~~~~~~ 153 (274)
++.++ .+.++++++|+++.+ +...+.+++.++ +.++++.||+.+.+.+. +...+... +..+++..+.
T Consensus 108 vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 187 (304)
T PLN02256 108 VLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARCER 187 (304)
T ss_pred HHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHHHH
Confidence 99998 577889999998876 344667777776 46799999987665432 22222211 3446788999
Q ss_pred HHHHhhhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-cCCChHH
Q 024016 154 IGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTK-SGKHPGQ 231 (274)
Q Consensus 154 v~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 231 (274)
++++++.+|.. +.+++++||.++|.+++.|+.++. +|.. ...+ ...+..++|++..+++.+ ...+|.+
T Consensus 188 l~~l~~~lGa~v~~~~~eeHD~~vA~iShLpH~la~---~L~~----~~~~---~~~~~~~gfrd~tria~r~~~~~p~l 257 (304)
T PLN02256 188 FLDIFEEEGCRMVEMSCEEHDRYAAGSQFITHTVGR---ILGK----MELE---STPINTKGYETLLRLVENTSSDSFDL 257 (304)
T ss_pred HHHHHHHCCCEEEEeCHHHHhHHHHhhhhHHHHHHH---HHHH----cCCc---ccccccccHHHHHHHHHhhcCCCHHH
Confidence 99999999965 889999999999999988886544 3322 2222 146778889998888731 1258999
Q ss_pred HHHhcCCCCchHHHHHHHHHhC--CHHHHHHHHHHHHHHH
Q 024016 232 LKDDVASPGGTTIAGIHELEKS--GFRGILMNAVVAAAKR 269 (274)
Q Consensus 232 ~~~~~~~~~g~t~~~l~~l~~~--~~~~~~~~a~~~~~~r 269 (274)
|.+.+.++.... ..++.+++. .+...+..-++..+++
T Consensus 258 w~dI~~~N~~~~-~~i~~~~~~l~~~~~~l~~~~~~~~~~ 296 (304)
T PLN02256 258 YYGLFMYNPNAT-EELERLELAFDSVKKQLFGRLHDVLRK 296 (304)
T ss_pred HHHHHHHChHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999998887777 888888774 5666666655555543
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=177.88 Aligned_cols=252 Identities=19% Similarity=0.252 Sum_probs=182.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC--HHHHHHHHHcCcee--ccCc-hhhccCCCEEEEeeCccc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN--LKRRDAFESIGVKV--LSDN-NAVVEYSDVVVFSVKPQV 83 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~--~~~~~~l~~~g~~~--~~~~-~~~~~~aDiIil~v~~~~ 83 (274)
..++|+|+|+|.||+++++.|.++|+ .+.++ +++ .++.+...+.|+.- ..+. .+.+..+|+||+|||...
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~----~v~i~-g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~ 76 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGL----VVRII-GRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEA 76 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCC----eEEEE-eecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHH
Confidence 35799999999999999999999999 77666 554 44444444466532 1222 566778999999999999
Q ss_pred HHHHHHHhccccCCCCEEEEecCCCCH---HHHHHhhCC-CceEEEcCCcHH-----hhcCCceEEecCCCCCHHHHHHH
Q 024016 84 VKDVAMQIRPLLSRKKLLVSVAAGVKL---KDLQEWTGH-SRFIRVMPNTPS-----AVGEAATVMSLGGTATEEDGELI 154 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~~~g~~~---~~l~~~~~~-~~~~~~~p~~~~-----~~~~g~~~i~~~~~~~~~~~~~v 154 (274)
+.++++++.+++++|.+|+++. ++.. +.+++..++ .+++..||..-. .......++++.+..+.+.++++
T Consensus 77 ~~~~l~~l~~~l~~g~iv~Dv~-S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~ 155 (279)
T COG0287 77 TEEVLKELAPHLKKGAIVTDVG-SVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEWVEEV 155 (279)
T ss_pred HHHHHHHhcccCCCCCEEEecc-cccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCEEEEcCCCCCCHHHHHHH
Confidence 9999999999999999888764 3443 455555542 368888886422 12233456777776678899999
Q ss_pred HHHhhhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Q 024016 155 GKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLK 233 (274)
Q Consensus 155 ~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (274)
+++|+.+|.. +++++++||..++..++.|++++. ++.....+.+........+...+|+...+++. .+|.+|.
T Consensus 156 ~~~~~~~ga~~v~~~~eeHD~~~a~vshLpH~~a~---al~~~~~~~~~~~~~~~~~as~~frd~tRia~---~~P~m~~ 229 (279)
T COG0287 156 KRLWEALGARLVEMDAEEHDRVMAAVSHLPHAAAL---ALANALAKLETEELLVLKLASGGFRDITRIAS---SDPEMYA 229 (279)
T ss_pred HHHHHHcCCEEEEcChHHHhHHHHHHHHHHHHHHH---HHHHHHHhcCcchhHHHhccccchhhHHHHHc---CChHHHH
Confidence 9999999964 889999999999999999987654 44444555554444578899999999999874 6899999
Q ss_pred HhcCCCCchHHHHHHHHHhC--CHHHHHH----HHHHHHHHHHhh
Q 024016 234 DDVASPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSRE 272 (274)
Q Consensus 234 ~~~~~~~g~t~~~l~~l~~~--~~~~~~~----~a~~~~~~r~~~ 272 (274)
+...++.......++.+.+. .+...+. +++.+.++++++
T Consensus 230 dI~~~N~~~~l~~i~~~~~~l~~l~~~i~~~d~~~l~~~~~~a~~ 274 (279)
T COG0287 230 DIQLSNKEALLEAIERFAKSLDELKELIENGDAEALADLFEEAKK 274 (279)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 99998887666665555442 1111111 355556665543
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.4e-23 Score=186.40 Aligned_cols=231 Identities=11% Similarity=0.079 Sum_probs=159.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc----Cce---eccCchhhccC---CCEEEEe
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI----GVK---VLSDNNAVVEY---SDVVVFS 78 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~----g~~---~~~~~~~~~~~---aDiIil~ 78 (274)
+.++|||||+|+||++||++|+++|| +|++| ||++++++.+.+. |.. .+.++.++++. +|+||+|
T Consensus 5 ~~~~IG~IGLG~MG~~mA~nL~~~G~----~V~V~-NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~ 79 (493)
T PLN02350 5 ALSRIGLAGLAVMGQNLALNIAEKGF----PISVY-NRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIIL 79 (493)
T ss_pred CCCCEEEEeeHHHHHHHHHHHHhCCC----eEEEE-CCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEE
Confidence 45689999999999999999999999 99999 9999999988763 543 56788888875 9999999
Q ss_pred eCc-ccHHHHHHHhccccCCCCEEEEecCCCCH--HHHHHhhC--CCceEEE-cCCcHHhhcCCceEEecCCCCCHHHHH
Q 024016 79 VKP-QVVKDVAMQIRPLLSRKKLLVSVAAGVKL--KDLQEWTG--HSRFIRV-MPNTPSAVGEAATVMSLGGTATEEDGE 152 (274)
Q Consensus 79 v~~-~~~~~v~~~i~~~l~~~~~vis~~~g~~~--~~l~~~~~--~~~~~~~-~p~~~~~~~~g~~~i~~~~~~~~~~~~ 152 (274)
||+ +++++|+.++.+.+.+|+++|++++.... ..+.+.+. +..++.+ +...|.....|.++++.| ++++++
T Consensus 80 v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~~im~GG---~~~a~~ 156 (493)
T PLN02350 80 VKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGPSLMPGG---SFEAYK 156 (493)
T ss_pred CCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCCeEEecC---CHHHHH
Confidence 984 56889999999999999999988554322 23333332 3445443 223455556777555544 789999
Q ss_pred HHHHHhhhcCC-------eEEcCccchhhHHHhhcchHHHHHHHHHHHHHHH---HH-cCCCHHHHHHHHHHHHHH--HH
Q 024016 153 LIGKLFGSVGK-------IWRADEKLFDAITGLSGSGPAYIFLAIEALADGG---VA-AGLPRELALGLASQTVLG--AA 219 (274)
Q Consensus 153 ~v~~ll~~~g~-------~~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~---~~-~Gl~~~~~~~~~~~~~~~--~~ 219 (274)
+++++|+.++. ++++++..-...+.++. +.+.+..+.+++|+. ++ .|+++++..+++.....+ .+
T Consensus 157 ~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~--N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf~~~~~g~~~S 234 (493)
T PLN02350 157 NIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVH--NGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAEWNKGELES 234 (493)
T ss_pred HHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHcCCCccc
Confidence 99999999983 47888765555555543 455566677777763 45 599999988885422221 11
Q ss_pred HHHHhcCCChHHHHHh-cCCCCchHHHHHHHHHh
Q 024016 220 SMVTKSGKHPGQLKDD-VASPGGTTIAGIHELEK 252 (274)
Q Consensus 220 ~~~~~~~~~~~~~~~~-~~~~~g~t~~~l~~l~~ 252 (274)
.+++ .....+... .++|++.....++.+.+
T Consensus 235 ~lle---i~~~~l~~~d~~~~~f~l~~i~Kd~~~ 265 (493)
T PLN02350 235 FLIE---ITADIFSVKDDKGDGYLVDKILDKTGM 265 (493)
T ss_pred hHHH---HHHHHHhhcCCCCCCchHHHHHhhhcc
Confidence 2222 112233333 25566666666665553
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.92 E-value=6e-23 Score=176.72 Aligned_cols=248 Identities=17% Similarity=0.200 Sum_probs=177.6
Q ss_pred EEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCc-ccHHHHH---HH
Q 024016 15 FIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVVKDVA---MQ 90 (274)
Q Consensus 15 iIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~-~~~~~v~---~~ 90 (274)
|||+|+||.+|+++|.++|| +|++| ||++++.+.+.+.|+....++.++++++|+||+|+|+ +++++++ .+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~----~V~v~-dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~ 75 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGH----PVRVF-DLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEG 75 (288)
T ss_pred CCcccHhHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcch
Confidence 69999999999999999999 99999 9999999999888988888888999999999999996 6688888 67
Q ss_pred hccccCCCCEEEEecCCCCHHH---HHHhhC--CCceEEEcC--CcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCC
Q 024016 91 IRPLLSRKKLLVSVAAGVKLKD---LQEWTG--HSRFIRVMP--NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGK 163 (274)
Q Consensus 91 i~~~l~~~~~vis~~~g~~~~~---l~~~~~--~~~~~~~~p--~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~ 163 (274)
+.+.+++++++|+++ +++++. +.+.+. +..++.. | ..+.....|...++.+. +++.+++++++|+.+|.
T Consensus 76 l~~~~~~g~~vid~s-t~~p~~~~~~~~~~~~~g~~~vda-Pv~Gg~~~a~~g~l~~~~gg--~~~~~~~~~~~l~~~g~ 151 (288)
T TIGR01692 76 ILPKVAKGSLLIDCS-TIDPDSARKLAELAAAHGAVFMDA-PVSGGVGGARAGTLTFMVGG--VAEEFAAAEPVLGPMGR 151 (288)
T ss_pred HhhcCCCCCEEEECC-CCCHHHHHHHHHHHHHcCCcEEEC-CCCCCHHHHhhCcEEEEECC--CHHHHHHHHHHHHHhcC
Confidence 877888999999875 666654 333332 3444443 3 23333445654443332 67889999999999996
Q ss_pred -eEEcCccchhhHHHhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChH----HHHHh
Q 024016 164 -IWRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPG----QLKDD 235 (274)
Q Consensus 164 -~~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 235 (274)
.+++++......+.++. +.+.+..+.++.|+ +++.|+|++...+++..+...+..... ....|. .+.+.
T Consensus 152 ~~~~~g~~g~g~~~Kl~~--n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~ 228 (288)
T TIGR01692 152 NIVHCGDHGAGQAAKICN--NMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSGRCWSSDT-YNPVPGVMPQAPASN 228 (288)
T ss_pred CeEeeCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCcHHHH-hCCCccccccccccC
Confidence 58888765555555543 34444445556565 569999999999998866543332221 111111 22345
Q ss_pred cCCCCchHHHHHHHH-------HhCCHHHHHHHHHHHHHHHHhhcC
Q 024016 236 VASPGGTTIAGIHEL-------EKSGFRGILMNAVVAAAKRSRELS 274 (274)
Q Consensus 236 ~~~~~g~t~~~l~~l-------~~~~~~~~~~~a~~~~~~r~~~~~ 274 (274)
.++|++.....++.+ ++.+++..+.+++.+.|+++.+.+
T Consensus 229 ~~~~~f~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 274 (288)
T TIGR01692 229 GYQGGFGTALMLKDLGLAQDAAKSAGAPTPLGALARQLYSLFDDKG 274 (288)
T ss_pred CCCCCcchHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcC
Confidence 568888776655443 556888888899999999887653
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.9e-23 Score=182.19 Aligned_cols=234 Identities=15% Similarity=0.132 Sum_probs=173.1
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHH
Q 024016 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 9 ~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v 87 (274)
..++|+||| +|.||++++..|.++|+ +|++| +|++. ++..+++.+||+||+|+|+....++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~----~V~~~-d~~~~-------------~~~~~~~~~aDlVilavP~~~~~~~ 158 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGY----QVRIL-EQDDW-------------DRAEDILADAGMVIVSVPIHLTEEV 158 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCC----eEEEe-CCCcc-------------hhHHHHHhcCCEEEEeCcHHHHHHH
Confidence 457999998 99999999999999999 99999 98631 2445677899999999999999999
Q ss_pred HHHhccccCCCCEEEEecCCCCH---HHHHHhhCCCceEEEcCCcHHhh--cCCceEEecCCCCCHHHHHHHHHHhhhcC
Q 024016 88 AMQIRPLLSRKKLLVSVAAGVKL---KDLQEWTGHSRFIRVMPNTPSAV--GEAATVMSLGGTATEEDGELIGKLFGSVG 162 (274)
Q Consensus 88 ~~~i~~~l~~~~~vis~~~g~~~---~~l~~~~~~~~~~~~~p~~~~~~--~~g~~~i~~~~~~~~~~~~~v~~ll~~~g 162 (274)
+.++.+ ++++++|+++ ++++. +.+.+..+ .+++..||..+... ..+...+. .+..+++.++.+.++++.+|
T Consensus 159 ~~~l~~-l~~~~iv~Dv-~SvK~~~~~~~~~~~~-~~fvg~HPm~G~~~~~~~~~~vv~-~~~~~~~~~~~~~~l~~~lG 234 (374)
T PRK11199 159 IARLPP-LPEDCILVDL-TSVKNAPLQAMLAAHS-GPVLGLHPMFGPDVGSLAKQVVVV-CDGRQPEAYQWLLEQIQVWG 234 (374)
T ss_pred HHHHhC-CCCCcEEEEC-CCccHHHHHHHHHhCC-CCEEeeCCCCCCCCcccCCCEEEE-cCCCCchHHHHHHHHHHHCC
Confidence 999988 8899988887 44443 34444444 36888888654322 12322333 33346778899999999999
Q ss_pred Ce-EEcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH----HHHHHHhcCCChHHHHHhcC
Q 024016 163 KI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLG----AASMVTKSGKHPGQLKDDVA 237 (274)
Q Consensus 163 ~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 237 (274)
.. ++++++.||..++++++.|++++. +++....+.+.+.+...++..++++. +++++. .+|.+|.+.+.
T Consensus 235 ~~v~~~~~~~HD~~~a~vshLpH~~a~---al~~~l~~~~~~~~~~~~~~~~~fr~~la~~tRia~---~~p~lw~dI~~ 308 (374)
T PRK11199 235 ARLHRISAVEHDQNMAFIQALRHFATF---AYGLHLAKENVDLEQLLALSSPIYRLELAMVGRLFA---QDPQLYADIIM 308 (374)
T ss_pred CEEEECCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHcCCCHHHHHHhcChHHHHHHHHHHHHHc---CCHHHHHHHHH
Confidence 65 889999999999999988877644 33333344788888777888888888 888874 68999999998
Q ss_pred CCCchHHHHHHHHHhC--CHHHHHH----HHHHHHHHHHh
Q 024016 238 SPGGTTIAGIHELEKS--GFRGILM----NAVVAAAKRSR 271 (274)
Q Consensus 238 ~~~g~t~~~l~~l~~~--~~~~~~~----~a~~~~~~r~~ 271 (274)
++.... ..++.+.+. .+...+. +.+.+.+++++
T Consensus 309 ~N~~~~-~~l~~~~~~l~~l~~~l~~~d~~~l~~~~~~a~ 347 (374)
T PRK11199 309 SSPENL-ALIKRYYQRFGEALELLEQGDKQAFIDSFRKVE 347 (374)
T ss_pred hChhHH-HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 887766 777666553 3444443 35555555554
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-22 Score=173.15 Aligned_cols=206 Identities=20% Similarity=0.213 Sum_probs=157.8
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH-HHHHHcCceeccCchhhccCCCEEEEeeCcccHHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR-DAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~-~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~ 86 (274)
.+.++|||||+|+||.+++++|.+.|+ +|.++ +|+.++. +...+.|+... +..+++++||+|++++|++...+
T Consensus 15 L~gktIgIIG~GsmG~AlA~~L~~sG~----~Vvv~-~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~~~~~ 88 (330)
T PRK05479 15 IKGKKVAIIGYGSQGHAHALNLRDSGV----DVVVG-LREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDEVQAE 88 (330)
T ss_pred hCCCEEEEEeeHHHHHHHHHHHHHCCC----EEEEE-ECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHHHHHH
Confidence 345799999999999999999999998 99888 6664443 33444677765 78889999999999999998899
Q ss_pred HH-HHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHh-------hcCCceEEe-cCCCCCHHHHHHHHH
Q 024016 87 VA-MQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSA-------VGEAATVMS-LGGTATEEDGELIGK 156 (274)
Q Consensus 87 v~-~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~-------~~~g~~~i~-~~~~~~~~~~~~v~~ 156 (274)
++ +++.+.++++++| +.+.|+++..++...+ +.++++++|+.|.+ .+.|++.++ ...+.+.++.+.+..
T Consensus 89 V~~~~I~~~Lk~g~iL-~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~~ 167 (330)
T PRK05479 89 VYEEEIEPNLKEGAAL-AFAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLALA 167 (330)
T ss_pred HHHHHHHhcCCCCCEE-EECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHHHH
Confidence 98 7799999999877 7889999988876665 57899999999988 889998887 566667899999999
Q ss_pred HhhhcCCe-E-----EcC-cc---chhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Q 024016 157 LFGSVGKI-W-----RAD-EK---LFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTK 224 (274)
Q Consensus 157 ll~~~g~~-~-----~~~-e~---~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 224 (274)
+++.+|.. . ... |. .++.-..++| ++..++.+-.|.+++.|++++.++--..+-++-...++.+
T Consensus 168 l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~g----g~~~l~~~~~e~l~eaG~~pe~Ay~e~~~e~k~i~dl~~~ 241 (330)
T PRK05479 168 YAKGIGGTRAGVIETTFKEETETDLFGEQAVLCG----GLTELIKAGFETLVEAGYQPEMAYFECLHELKLIVDLIYE 241 (330)
T ss_pred HHHHcCCCccceeeeeecccccccchhhHHHHhh----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999953 2 222 22 3444333433 4445666777788899999998875444444444455443
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.6e-22 Score=171.60 Aligned_cols=247 Identities=18% Similarity=0.181 Sum_probs=173.5
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcc-cHHHHH--
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVKDVA-- 88 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~-~~~~v~-- 88 (274)
||||||+|+||.+|+.+|.+.|+ +|++| ||++++.+.+.+.|....+++.+++++||+||+|+|+. .+++++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~----~V~~~-dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~ 75 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY----QLHVT-TIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFG 75 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC----eEEEE-cCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcC
Confidence 59999999999999999999999 99999 99999999998888877778888899999999999864 577776
Q ss_pred -HHhccccCCCCEEEEecCCCCHH---HHHHhhC--CCceEEEcCC--cHHhhcCCc-eEEecCCCCCHHHHHHHHHHhh
Q 024016 89 -MQIRPLLSRKKLLVSVAAGVKLK---DLQEWTG--HSRFIRVMPN--TPSAVGEAA-TVMSLGGTATEEDGELIGKLFG 159 (274)
Q Consensus 89 -~~i~~~l~~~~~vis~~~g~~~~---~l~~~~~--~~~~~~~~p~--~~~~~~~g~-~~i~~~~~~~~~~~~~v~~ll~ 159 (274)
.++.+.+++++++|++++ +++. .+.+.+. +..++. .|. .+.....|. .++..+ +++.++.++++|+
T Consensus 76 ~~~~~~~~~~g~iivd~st-~~~~~~~~l~~~l~~~g~~~~~-~pv~g~~~~a~~g~l~i~~gg---~~~~~~~~~~ll~ 150 (291)
T TIGR01505 76 ENGIIEGAKPGKTLVDMSS-ISPIESKRFAKAVKEKGIDYLD-APVSGGEIGAIEGTLSIMVGG---DQAVFDRVKPLFE 150 (291)
T ss_pred cchHhhcCCCCCEEEECCC-CCHHHHHHHHHHHHHcCCCEEe-cCCCCCHHHHhcCCEEEEecC---CHHHHHHHHHHHH
Confidence 345566788999997654 4443 4554443 334444 242 222233454 344443 6889999999999
Q ss_pred hcCC-eEEcCccchhhHHHhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHh
Q 024016 160 SVGK-IWRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDD 235 (274)
Q Consensus 160 ~~g~-~~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (274)
.+|. .+++++......+.++ .+.+....++++.|+ +++.|++++++.+++..+..++..+ .. ....+.+.
T Consensus 151 ~lg~~~~~~g~~g~a~~~Kl~--~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~~s~~~-~~---~~~~~~~~ 224 (291)
T TIGR01505 151 ALGKNIVLVGGNGDGQTCKVA--NQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLAGSTVL-EV---KGERVIDR 224 (291)
T ss_pred HhcCCeEEeCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHH-Hh---hChhhhcC
Confidence 9996 4778765444444443 234444445555555 4689999999999998776654433 21 12244455
Q ss_pred cCCCCchHHHH-------HHHHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024016 236 VASPGGTTIAG-------IHELEKSGFRGILMNAVVAAAKRSRELS 274 (274)
Q Consensus 236 ~~~~~g~t~~~-------l~~l~~~~~~~~~~~a~~~~~~r~~~~~ 274 (274)
.+.|++..... ++..++.++...+.++..+.|+++.+.+
T Consensus 225 ~~~~~f~~~~~~KDl~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g 270 (291)
T TIGR01505 225 TFKPGFRIDLHQKDLNLALDSAKAVGANLPNTATVQELFNTLRANG 270 (291)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHhcC
Confidence 56787666443 4445666888888888888888887653
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-22 Score=200.73 Aligned_cols=251 Identities=12% Similarity=0.107 Sum_probs=183.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccHHHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVKDV 87 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~~v 87 (274)
...||||||+|+||.+|+++|+++|| +|++| ||++++.+.+.+.|+..++++.+++++||+||+|+| ++++++|
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~----~v~v~-dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V 77 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGF----KVQAF-EISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDV 77 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCC----eEEEE-cCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHH
Confidence 34689999999999999999999999 99999 999999999999999999999999999999999998 4568888
Q ss_pred H---HHhccccCCCCEEEEecCCCCHHH---HHHhhC--C--CceEEE-cCCcHHhhcCCceEEecCCCCCHHHHHHHHH
Q 024016 88 A---MQIRPLLSRKKLLVSVAAGVKLKD---LQEWTG--H--SRFIRV-MPNTPSAVGEAATVMSLGGTATEEDGELIGK 156 (274)
Q Consensus 88 ~---~~i~~~l~~~~~vis~~~g~~~~~---l~~~~~--~--~~~~~~-~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ 156 (274)
+ .++.+.+++|+++|++ ++++++. +.+.+. + ..++.. +...|.....|...++.|. +++.++++++
T Consensus 78 ~~g~~g~~~~l~~g~iivd~-STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG--~~~~~~~~~p 154 (1378)
T PLN02858 78 FFGDEGAAKGLQKGAVILIR-STILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASG--RSDAITRAQP 154 (1378)
T ss_pred HhchhhHHhcCCCcCEEEEC-CCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcC--CHHHHHHHHH
Confidence 7 4577778899999976 4555544 333332 2 233432 2234555556665544332 7889999999
Q ss_pred HhhhcCCe-EE-cCccchhhHHHhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 024016 157 LFGSVGKI-WR-ADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQ 231 (274)
Q Consensus 157 ll~~~g~~-~~-~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (274)
+|+.+|.. ++ .++..-...+.++ .+.+.+..+.++.|+ +++.|++++.+++++..+..++..+.. . ...
T Consensus 155 ~l~~~g~~i~~~~G~~G~g~~~KL~--nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s~g~s~~~~~---~-~~~ 228 (1378)
T PLN02858 155 FLSAMCQKLYTFEGEIGAGSKVKMV--NELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWIFKN---H-VPL 228 (1378)
T ss_pred HHHHhcCceEEecCCCCHhHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCHHHHh---h-hhH
Confidence 99999965 54 4664444444433 244444455666665 579999999999999988766554322 2 235
Q ss_pred HHHhcCCCCchHHHHHHHH-------HhCCHHHHHHHHHHHHHHHHhhc
Q 024016 232 LKDDVASPGGTTIAGIHEL-------EKSGFRGILMNAVVAAAKRSREL 273 (274)
Q Consensus 232 ~~~~~~~~~g~t~~~l~~l-------~~~~~~~~~~~a~~~~~~r~~~~ 273 (274)
+.+..++|++......+.+ ++.++.-.+.++..+.|+++.+.
T Consensus 229 ~~~~d~~~~F~l~l~~KDl~la~~~A~~~g~~lpl~~~a~~~~~~a~~~ 277 (1378)
T PLN02858 229 LLKDDYIEGRFLNVLVQNLGIVLDMAKSLPFPLPLLAVAHQQLISGSSS 277 (1378)
T ss_pred hhcCCCCCCchhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhc
Confidence 5566678888877765554 55678877888888888887664
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-22 Score=171.81 Aligned_cols=193 Identities=17% Similarity=0.159 Sum_probs=146.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccC---CCEEEEeeCcc-cHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEY---SDVVVFSVKPQ-VVKD 86 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~---aDiIil~v~~~-~~~~ 86 (274)
|||||||+|+||.+|+++|.++|+ +|++| ||++++.+.+.+.|+..+.++.+++++ +|+||+|+|++ .+++
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~----~v~v~-dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~ 75 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGH----EVVGY-DVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTES 75 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHH
Confidence 489999999999999999999999 99999 999999999988898888888888765 69999999987 8999
Q ss_pred HHHHhccccCCCCEEEEecCCCC--HHHHHHhhC--CCceEEE-cCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhc
Q 024016 87 VAMQIRPLLSRKKLLVSVAAGVK--LKDLQEWTG--HSRFIRV-MPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSV 161 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~~g~~--~~~l~~~~~--~~~~~~~-~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~ 161 (274)
++.++.+.+++++++|++++..+ ...+.+.+. +..++.. +...|.....|.++++.| +++.+++++++|+.+
T Consensus 76 v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~~~~~gG---~~~~~~~~~~~l~~~ 152 (299)
T PRK12490 76 VIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGYCLMVGG---DKEIYDRLEPVFKAL 152 (299)
T ss_pred HHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCCeEEecC---CHHHHHHHHHHHHHh
Confidence 99999888889999998855433 233444432 3334432 223444555676555544 788999999999999
Q ss_pred CC----eEEcCccchhhHHHhhcchHHHHHHHHHHHHHH---HHHcC--CCHHHHHHHHHH
Q 024016 162 GK----IWRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAG--LPRELALGLASQ 213 (274)
Q Consensus 162 g~----~~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~~G--l~~~~~~~~~~~ 213 (274)
|. .+++++..-...+.++ .+.+.+..+.++.|+ +++.| +|++.+.+++..
T Consensus 153 ~~~~~~~~~~G~~g~a~~~Kl~--~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~~ 211 (299)
T PRK12490 153 APEGPGYVHAGPVGSGHFLKMV--HNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWRN 211 (299)
T ss_pred cCcCCcEEEECCcCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHcC
Confidence 95 4788875444444443 345555666677776 45788 999999999885
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-23 Score=164.30 Aligned_cols=151 Identities=25% Similarity=0.418 Sum_probs=114.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCc-ccHHHHH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVVKDVA 88 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~-~~~~~v~ 88 (274)
|+||||||+|+||+.|+++|.++|| +|++| ||++++.+++.+.|++.++++.|+++++|+||+|+|+ +++++++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~----~v~~~-d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~ 75 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGY----EVTVY-DRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVL 75 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTT----EEEEE-ESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCC----eEEee-ccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhh
Confidence 4699999999999999999999999 99999 9999999999999999999999999999999999986 6799999
Q ss_pred HH--hccccCCCCEEEEecCCCCHH---HHHHhhC--CCceEEE-cCCcHHhhcCCc-eEEecCCCCCHHHHHHHHHHhh
Q 024016 89 MQ--IRPLLSRKKLLVSVAAGVKLK---DLQEWTG--HSRFIRV-MPNTPSAVGEAA-TVMSLGGTATEEDGELIGKLFG 159 (274)
Q Consensus 89 ~~--i~~~l~~~~~vis~~~g~~~~---~l~~~~~--~~~~~~~-~p~~~~~~~~g~-~~i~~~~~~~~~~~~~v~~ll~ 159 (274)
.+ +.+.+++|+++|++ ++++++ .+++.+. +..++.. +...|.....|. +++..| +++.+++++++|+
T Consensus 76 ~~~~i~~~l~~g~iiid~-sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG---~~~~~~~~~~~l~ 151 (163)
T PF03446_consen 76 FGENILAGLRPGKIIIDM-STISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGG---DEEAFERVRPLLE 151 (163)
T ss_dssp HCTTHGGGS-TTEEEEE--SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES----HHHHHHHHHHHH
T ss_pred hhhHHhhccccceEEEec-CCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccC---CHHHHHHHHHHHH
Confidence 88 99999999999987 445554 3444442 3344432 234455556666 455554 6899999999999
Q ss_pred hcCCe-E-EcCc
Q 024016 160 SVGKI-W-RADE 169 (274)
Q Consensus 160 ~~g~~-~-~~~e 169 (274)
.+|.. + +++|
T Consensus 152 ~~~~~v~~~~G~ 163 (163)
T PF03446_consen 152 AMGKNVYHYVGP 163 (163)
T ss_dssp HHEEEEEEE-ES
T ss_pred HHhCCceeeeCc
Confidence 99975 5 3453
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.2e-23 Score=148.72 Aligned_cols=107 Identities=58% Similarity=0.907 Sum_probs=100.0
Q ss_pred cCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHH
Q 024016 167 ADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAG 246 (274)
Q Consensus 167 ~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~ 246 (274)
++|+++|.+++++||+|+|++.+++++.+++++.|++++++++++.+++.|+..++.+++.+|..+++.++||||+|+++
T Consensus 1 V~E~~~d~~talsGsgpA~~~~~~eal~~a~v~~Gl~~~~A~~lv~~t~~G~a~ll~~~~~~~~~l~~~v~tPgG~T~~g 80 (107)
T PF14748_consen 1 VDEDQFDAATALSGSGPAYFFLFIEALADAAVAQGLPREEARKLVAQTFIGAAKLLEESGRSPAELRDEVTTPGGTTIAG 80 (107)
T ss_dssp -SGGGHHHHHHHCTTHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHCSS-HHHHHHHHS-TTSHHHHH
T ss_pred CCHHHHhHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHccCCCHHHHhhhccCCCCcHHHH
Confidence 47899999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhhc
Q 024016 247 IHELEKSGFRGILMNAVVAAAKRSREL 273 (274)
Q Consensus 247 l~~l~~~~~~~~~~~a~~~~~~r~~~~ 273 (274)
|+.|++.+++..+.++++++++|++||
T Consensus 81 l~~L~~~~~~~~~~~a~~aa~~R~~el 107 (107)
T PF14748_consen 81 LEVLEKGGLRAAIMEALEAAVERAKEL 107 (107)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999987
|
... |
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-21 Score=166.99 Aligned_cols=249 Identities=18% Similarity=0.220 Sum_probs=169.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCc-ccHHHHH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVVKDVA 88 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~-~~~~~v~ 88 (274)
+|||||||+|.||.+++.+|.+.|+ +|++| ||++++.+.+.+.|+...+++.++++++|+||+|+|+ ..++.++
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g~----~v~~~-d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~ 76 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAGY----SLVVY-DRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVA 76 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCCC----eEEEE-cCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHH
Confidence 3689999999999999999999999 99999 9999999888888888777888888999999999985 4567776
Q ss_pred ---HHhccccCCCCEEEEecCCCCHH---HHHHhhC--CCceEEEcC--CcHHhhcCCc-eEEecCCCCCHHHHHHHHHH
Q 024016 89 ---MQIRPLLSRKKLLVSVAAGVKLK---DLQEWTG--HSRFIRVMP--NTPSAVGEAA-TVMSLGGTATEEDGELIGKL 157 (274)
Q Consensus 89 ---~~i~~~l~~~~~vis~~~g~~~~---~l~~~~~--~~~~~~~~p--~~~~~~~~g~-~~i~~~~~~~~~~~~~v~~l 157 (274)
.++.+.++++++++++++ +++. .+.+.+. +..++.. | ..+.....|. ++++.+ +++.++.++++
T Consensus 77 ~~~~~~~~~~~~g~iiid~st-~~~~~~~~l~~~~~~~g~~~~d~-pv~g~~~~a~~g~l~i~~gg---~~~~~~~~~~~ 151 (296)
T PRK11559 77 LGENGIIEGAKPGTVVIDMSS-IAPLASREIAAALKAKGIEMLDA-PVSGGEPKAIDGTLSVMVGG---DKAIFDKYYDL 151 (296)
T ss_pred cCcchHhhcCCCCcEEEECCC-CCHHHHHHHHHHHHHcCCcEEEc-CCCCCHHHHhhCcEEEEECC---CHHHHHHHHHH
Confidence 446777889999997654 4433 4555443 2333332 2 1222223344 444433 68889999999
Q ss_pred hhhcCC-eEEcCccchhhHHHhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Q 024016 158 FGSVGK-IWRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLK 233 (274)
Q Consensus 158 l~~~g~-~~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (274)
|+.+|. .+++++..-...+.++ .+.+.+..+..+.|+ +.+.|++.++..+.+..+..++..+ .. ..+ .+.
T Consensus 152 l~~~~~~~~~~g~~g~a~~~Kl~--~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~~~s~~~-~~--~~~-~~~ 225 (296)
T PRK11559 152 MKAMAGSVVHTGDIGAGNVTKLA--NQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVL-DA--KAP-MVM 225 (296)
T ss_pred HHHhcCCeEEeCCcCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHH-Hh--hch-Hhh
Confidence 999996 4777754322333332 233444333344444 5689999999988887665544332 21 223 344
Q ss_pred HhcCCCCchHHHH-------HHHHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024016 234 DDVASPGGTTIAG-------IHELEKSGFRGILMNAVVAAAKRSRELS 274 (274)
Q Consensus 234 ~~~~~~~g~t~~~-------l~~l~~~~~~~~~~~a~~~~~~r~~~~~ 274 (274)
+..+.|+++.... ++..++.++...+.+++.+.|+.+.+.|
T Consensus 226 ~~d~~~~f~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g 273 (296)
T PRK11559 226 DRNFKPGFRIDLHIKDLANALDTSHGVGAPLPLTAAVMEMMQALKADG 273 (296)
T ss_pred cCCCCCCcchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcC
Confidence 4556787765443 3345666888888888888888887653
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-20 Score=161.75 Aligned_cols=194 Identities=14% Similarity=0.104 Sum_probs=142.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhc---cCCCEEEEeeCcccHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVV---EYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~---~~aDiIil~v~~~~~~~v 87 (274)
|||||||+|+||.+|+++|.++|| +|.+| ||++++.+.+.+.|.....++.++. +.+|+||+|+|++.++++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~----~V~~~-dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v 75 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGH----DCVGY-DHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHGIVDAV 75 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCchHHHHH
Confidence 589999999999999999999999 99999 9999999999887776656665543 468999999999999999
Q ss_pred HHHhccccCCCCEEEEecCCCCHH--HHHHhhC--CCceEEEcC-CcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcC
Q 024016 88 AMQIRPLLSRKKLLVSVAAGVKLK--DLQEWTG--HSRFIRVMP-NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVG 162 (274)
Q Consensus 88 ~~~i~~~l~~~~~vis~~~g~~~~--~l~~~~~--~~~~~~~~p-~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g 162 (274)
++++.+.++++++||+++++.+.+ .+.+.+. +.+++.... ..+.....|.+.+..| +++.++.++++|+.++
T Consensus 76 ~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG---~~~~~~~~~~~l~~~~ 152 (298)
T TIGR00872 76 LEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGG---DGEAFARAEPLFADVA 152 (298)
T ss_pred HHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCC---CHHHHHHHHHHHHHhc
Confidence 999999999999999987765332 3333332 344554322 2344445676555544 7899999999999998
Q ss_pred C----eEEcCccchhhHHHhhcchHHHHHHHHHHHHHH---HHHc--CCCHHHHHHHHHHH
Q 024016 163 K----IWRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAA--GLPRELALGLASQT 214 (274)
Q Consensus 163 ~----~~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~~--Gl~~~~~~~~~~~~ 214 (274)
. .+++++..-.....+. .+.+.+..+.+++|+ +++. |++.++..++...+
T Consensus 153 ~~~~~~~~~G~~G~~~~~K~~--~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g 211 (298)
T TIGR00872 153 PEEQGYLYCGPCGSGHFVKMV--HNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRG 211 (298)
T ss_pred CcCCCEEEECCccHhHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHcCC
Confidence 5 4777775433343333 244555556666665 3455 56999988887664
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.2e-21 Score=165.63 Aligned_cols=194 Identities=17% Similarity=0.180 Sum_probs=145.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccC---CCEEEEeeCcc-cHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEY---SDVVVFSVKPQ-VVKD 86 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~---aDiIil~v~~~-~~~~ 86 (274)
|||||||+|+||.+|+++|.++|+ +|++| ||++++.+.+.+.|+..++++.++++. +|+||+|+|++ .+++
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~----~v~v~-dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~ 75 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGH----EVVGY-DRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDA 75 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCC----eEEEE-ECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHH
Confidence 589999999999999999999999 99999 999999999988899888888888775 69999999977 7899
Q ss_pred HHHHhccccCCCCEEEEecCCCCH--HHHHHhhC--CCceEEE-cCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhc
Q 024016 87 VAMQIRPLLSRKKLLVSVAAGVKL--KDLQEWTG--HSRFIRV-MPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSV 161 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~~g~~~--~~l~~~~~--~~~~~~~-~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~ 161 (274)
++.++.+.+++++++|+++++.+. ..+.+.+. +..++.. +...+.....|.+++..| +++.+++++++|+.+
T Consensus 76 v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~~~~a~~g~~~~~gG---~~~~~~~~~~~l~~~ 152 (301)
T PRK09599 76 TIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGGVWGLERGYCLMIGG---DKEAVERLEPIFKAL 152 (301)
T ss_pred HHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcCHHHHhcCCeEEecC---CHHHHHHHHHHHHHH
Confidence 998888888899999988655432 23433332 3444442 123344455676555544 789999999999999
Q ss_pred CC----e-EEcCccchhhHHHhhcchHHHHHHHHHHHHHH---HHH--cCCCHHHHHHHHHHH
Q 024016 162 GK----I-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVA--AGLPRELALGLASQT 214 (274)
Q Consensus 162 g~----~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~--~Gl~~~~~~~~~~~~ 214 (274)
+. . +++++..-...+.++ .+.+.+..+.++.|+ +++ .|+|.+...+++..+
T Consensus 153 ~~~~~~~~~~~G~~G~g~~~Kl~--~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~~~~ 213 (301)
T PRK09599 153 APRAEDGYLHAGPVGAGHFVKMV--HNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVWRRG 213 (301)
T ss_pred cccccCCeEeECCCcHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCC
Confidence 97 4 788875433333332 344555555666665 456 999999999988865
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.8e-20 Score=167.71 Aligned_cols=192 Identities=13% Similarity=0.192 Sum_probs=143.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc----C--ceeccCchhhcc---CCCEEEEeeC-
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI----G--VKVLSDNNAVVE---YSDVVVFSVK- 80 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~----g--~~~~~~~~~~~~---~aDiIil~v~- 80 (274)
.+|||||+|+||++||++|.++|| +|++| ||++++.+.+.+. | +..+.++.++++ ++|+||+|++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~----~V~v~-dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~ 76 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGF----KISVY-NRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKA 76 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCC
Confidence 489999999999999999999999 99999 9999999888763 5 345678888876 5899999986
Q ss_pred cccHHHHHHHhccccCCCCEEEEecCCCCHHHH--HHhhC--CCceEEE-cCCcHHhhcCCceEEecCCCCCHHHHHHHH
Q 024016 81 PQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDL--QEWTG--HSRFIRV-MPNTPSAVGEAATVMSLGGTATEEDGELIG 155 (274)
Q Consensus 81 ~~~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l--~~~~~--~~~~~~~-~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~ 155 (274)
++.++++++++.+.+.+|++||+++++...+.. .+.+. +..++.+ +...+.....|.++++.| +++++++++
T Consensus 77 ~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~~lm~GG---~~~a~~~~~ 153 (470)
T PTZ00142 77 GEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGPSLMPGG---NKEAYDHVK 153 (470)
T ss_pred hHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCCEEEEeC---CHHHHHHHH
Confidence 557899999999999999999998777654332 22222 3444432 223455556777655554 789999999
Q ss_pred HHhhhcC-C------eEEcCccchhhHHHhhcchHHHHHHHHHHHHHH---HH-HcCCCHHHHHHHHH
Q 024016 156 KLFGSVG-K------IWRADEKLFDAITGLSGSGPAYIFLAIEALADG---GV-AAGLPRELALGLAS 212 (274)
Q Consensus 156 ~ll~~~g-~------~~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~-~~Gl~~~~~~~~~~ 212 (274)
++|+.++ + +.++++..-.....++. +.+.+..++++.|+ ++ +.|++.++..+++.
T Consensus 154 piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvh--N~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~~ 219 (470)
T PTZ00142 154 DILEKCSAKVGDSPCVTYVGPGSSGHYVKMVH--NGIEYGDMQLISESYKLMKHILGMSNEELSEVFN 219 (470)
T ss_pred HHHHHHhhhcCCCCeEEEECCCCHHHHHHHHh--HHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 9999998 4 36788765444555543 34445566677766 33 59999999888874
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.8e-21 Score=179.90 Aligned_cols=243 Identities=13% Similarity=0.098 Sum_probs=170.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhcc-CCCEEEEeeCcccHHHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE-YSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~-~aDiIil~v~~~~~~~v 87 (274)
+.+||||||+|+||.+++++|.+.|+ +|++| +|+... +...+.|+....+..+++. .+|+||+|||+..+.++
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~----~V~~~-dr~~~~-~~a~~~Gv~~~~~~~el~~~~aDvVILavP~~~~~~v 441 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGH----TVLAY-SRSDYS-DEAQKLGVSYFSDADDLCEEHPEVILLCTSILSTEKV 441 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcC----EEEEE-ECChHH-HHHHHcCCeEeCCHHHHHhcCCCEEEECCChHHHHHH
Confidence 56899999999999999999999998 99999 998653 4455578776667777665 58999999999999999
Q ss_pred HHHhcc-ccCCCCEEEEecCC--CCHHHHHHhhC-CCceEEEcCCcHHhhc-CC---ce-----EEecCCCCCHHHHHHH
Q 024016 88 AMQIRP-LLSRKKLLVSVAAG--VKLKDLQEWTG-HSRFIRVMPNTPSAVG-EA---AT-----VMSLGGTATEEDGELI 154 (274)
Q Consensus 88 ~~~i~~-~l~~~~~vis~~~g--~~~~~l~~~~~-~~~~~~~~p~~~~~~~-~g---~~-----~i~~~~~~~~~~~~~v 154 (274)
+.++.. .++++++|++++++ ...+.+.+.++ +.++++.||+.....+ .| .. .++.++....+.++.+
T Consensus 442 i~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~~lf~~~~v~~~~~~~~~~~~l 521 (667)
T PLN02712 442 LKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLAFVFDKVRIGSDDRRVSRCDSF 521 (667)
T ss_pred HHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCccccccchhhhhhhccCcEeCCCcchHHHHHHH
Confidence 998865 57889999988654 34566666666 4679999998765443 23 11 1122222234556677
Q ss_pred HHHhhhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-cCCChHHH
Q 024016 155 GKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTK-SGKHPGQL 232 (274)
Q Consensus 155 ~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 232 (274)
.++++.+|.. +.++.++||..+|.+++.|+.++ ....+.|++. ..+...+++....++.+ ...+|..|
T Consensus 522 ~~l~~~lGa~vv~ms~eeHD~~~A~vShLpHlla-------~~L~~~~~~~---~~~~~~gfr~l~~Li~Ria~~~p~l~ 591 (667)
T PLN02712 522 LDIFAREGCRMVEMSCAEHDWHAAGSQFITHTMG-------RLLEKLGLES---TPINTKGYETLLNLVENTAGDSFDLY 591 (667)
T ss_pred HHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHH-------HHHHHCCCcc---cccccHHHHHHHHHHHhhcCCCHHHH
Confidence 7999999965 88999999999998887777543 2334555541 23444555555422221 23589999
Q ss_pred HHhcCCCCchHHHHHHHHHhC--CHHHHHHHHHHHHHH
Q 024016 233 KDDVASPGGTTIAGIHELEKS--GFRGILMNAVVAAAK 268 (274)
Q Consensus 233 ~~~~~~~~g~t~~~l~~l~~~--~~~~~~~~a~~~~~~ 268 (274)
.+.+..+... .+.++.+++. .++..+.+-++.+++
T Consensus 592 ~dI~~~N~~a-~~~l~~f~~~l~~~~~~l~~~~~~~~~ 628 (667)
T PLN02712 592 YGLFMYNVNA-MEQLERLDLAFESLKKQLFGRLHGVLR 628 (667)
T ss_pred HHHHHHChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999887666 6677777653 566666555555543
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-20 Score=187.73 Aligned_cols=250 Identities=16% Similarity=0.133 Sum_probs=177.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccHHHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVKDV 87 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~~v 87 (274)
..++|||||+|+||.+|+++|+++|| +|++| ||++++.+.+.+.|+....++.+++++||+||+||| +++++++
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~----~V~v~-dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~V 397 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNF----SVCGY-DVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENV 397 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHH
Confidence 34789999999999999999999999 99999 999999999988888777889999999999999998 7778888
Q ss_pred HH---HhccccCCCCEEEEecCCCCHH---HHHHhhC----CCceEEE-cCCcHHhhcCCc-eEEecCCCCCHHHHHHHH
Q 024016 88 AM---QIRPLLSRKKLLVSVAAGVKLK---DLQEWTG----HSRFIRV-MPNTPSAVGEAA-TVMSLGGTATEEDGELIG 155 (274)
Q Consensus 88 ~~---~i~~~l~~~~~vis~~~g~~~~---~l~~~~~----~~~~~~~-~p~~~~~~~~g~-~~i~~~~~~~~~~~~~v~ 155 (274)
+. ++.+.+++|+++|++ ++++++ .+.+.+. +..++.. +...|.....|. ++++.| +++.+++++
T Consensus 398 l~g~~g~~~~l~~g~ivVd~-STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG---~~~~~~~~~ 473 (1378)
T PLN02858 398 LFGDLGAVSALPAGASIVLS-STVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASG---TDEALKSAG 473 (1378)
T ss_pred HhchhhHHhcCCCCCEEEEC-CCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEEC---CHHHHHHHH
Confidence 73 466677899999977 445544 3434332 2233332 223455555665 445544 688999999
Q ss_pred HHhhhcCCe-EEc-CccchhhHHHhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 024016 156 KLFGSVGKI-WRA-DEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPG 230 (274)
Q Consensus 156 ~ll~~~g~~-~~~-~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (274)
++|+.+|.. +++ ++..-...+.++ .+.+.+..+.++.|+ +++.|++++.+++++..+...+..+ .. ..+
T Consensus 474 plL~~lg~~i~~~~g~~G~a~~~KL~--nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~s~g~s~~~-~~--~~~- 547 (1378)
T PLN02858 474 SVLSALSEKLYVIKGGCGAGSGVKMV--NQLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSWMF-EN--RVP- 547 (1378)
T ss_pred HHHHHHhCcEEEeCCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccChhh-hh--ccc-
Confidence 999999965 553 443333344433 233444445556665 4689999999999998887655433 21 233
Q ss_pred HHHHhcCCCCchHHHHHHH-------HHhCCHHHHHHHHHHHHHHHHhhc
Q 024016 231 QLKDDVASPGGTTIAGIHE-------LEKSGFRGILMNAVVAAAKRSREL 273 (274)
Q Consensus 231 ~~~~~~~~~~g~t~~~l~~-------l~~~~~~~~~~~a~~~~~~r~~~~ 273 (274)
.+.+..++|++......+. .++.++...+.++..+.|+++.+.
T Consensus 548 ~~l~~d~~~~f~l~l~~KDl~l~~~~a~~~g~~~pl~~~~~~~~~~a~~~ 597 (1378)
T PLN02858 548 HMLDNDYTPYSALDIFVKDLGIVSREGSSRKIPLHLSTVAHQLFLAGSAS 597 (1378)
T ss_pred hhhcCCCCCCchhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhc
Confidence 3445556888777665444 455677777888888888887654
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-19 Score=167.17 Aligned_cols=192 Identities=17% Similarity=0.135 Sum_probs=143.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-------------------cC-ceeccCchhhc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------------------IG-VKVLSDNNAVV 69 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-------------------~g-~~~~~~~~~~~ 69 (274)
.+||+|||+|.||++||.+|+++|+ +|++| |+++++.+.+.+ .| ++.++++.+++
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~G~----~V~v~-D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~ 78 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLAGI----DVAVF-DPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAV 78 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHh
Confidence 4689999999999999999999999 99999 999988765421 13 56677888889
Q ss_pred cCCCEEEEeeCccc-H-HHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEecCCCC
Q 024016 70 EYSDVVVFSVKPQV-V-KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTA 146 (274)
Q Consensus 70 ~~aDiIil~v~~~~-~-~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~~~~~ 146 (274)
++||+||.|+|++. + +.++.++.+..+++.+|.|.+++++++.+++.+. ..+++..||+.|...+. ...+++++..
T Consensus 79 ~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~-Lvevv~g~~t 157 (495)
T PRK07531 79 AGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLP-LVELVGGGKT 157 (495)
T ss_pred cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCc-eEEEcCCCCC
Confidence 99999999998774 4 4566778777788888888889999988888775 35788899988876543 3456677778
Q ss_pred CHHHHHHHHHHhhhcCCe-EEcCccchhhHHHhhcchHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 024016 147 TEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFL-AIEALADGGVAAGLPRELALGLASQT 214 (274)
Q Consensus 147 ~~~~~~~v~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~-~~~~l~e~~~~~Gl~~~~~~~~~~~~ 214 (274)
+++.++.++++++.+|+. +++.. ..+.+++ +..... +.|++. .+.+.|+++++..+++..+
T Consensus 158 ~~e~~~~~~~~~~~lG~~~v~~~k-~~~gfi~-----nrl~~a~~~EA~~-L~~~g~~s~~~id~~~~~g 220 (495)
T PRK07531 158 SPETIRRAKEILREIGMKPVHIAK-EIDAFVG-----DRLLEALWREALW-LVKDGIATTEEIDDVIRYS 220 (495)
T ss_pred CHHHHHHHHHHHHHcCCEEEeecC-CCcchhH-----HHHHHHHHHHHHH-HHHcCCCCHHHHHHHHhhc
Confidence 899999999999999976 66643 2333222 111111 123321 1346778999888887755
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=165.02 Aligned_cols=238 Identities=12% Similarity=0.106 Sum_probs=164.6
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~-g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~ 86 (274)
.++||+|||+ |.||+++++.|.+. ++ +|++| |++.+ ...++.+.+++||+||+|||...+.+
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~----~V~g~-D~~d~-----------~~~~~~~~v~~aDlVilavPv~~~~~ 66 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQL----EVIGH-DPADP-----------GSLDPATLLQRADVLIFSAPIRHTAA 66 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCC----EEEEE-cCCcc-----------ccCCHHHHhcCCCEEEEeCCHHHHHH
Confidence 4679999999 99999999999864 66 89999 88521 12355677889999999999999999
Q ss_pred HHHHhccc---cCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHh-h--cCCce-EEecCCCCCHHHHHHHHHHh
Q 024016 87 VAMQIRPL---LSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSA-V--GEAAT-VMSLGGTATEEDGELIGKLF 158 (274)
Q Consensus 87 v~~~i~~~---l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~-~--~~g~~-~i~~~~~~~~~~~~~v~~ll 158 (274)
+++++.+. ++++++|.++ ++++...++...+ ..+++..||..-.+ . .+|.. ++++. ...+..+++++++
T Consensus 67 ~l~~l~~~~~~l~~~~iVtDV-gSvK~~i~~~~~~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~--~~~~~~~~v~~l~ 143 (370)
T PRK08818 67 LIEEYVALAGGRAAGQLWLDV-TSIKQAPVAAMLASQAEVVGLHPMTAPPKSPTLKGRVMVVCEA--RLQHWSPWVQSLC 143 (370)
T ss_pred HHHHHhhhhcCCCCCeEEEEC-CCCcHHHHHHHHhcCCCEEeeCCCCCCCCCcccCCCeEEEeCC--CchhHHHHHHHHH
Confidence 99998875 6888776665 5566555544444 35688888865322 1 13443 44543 2445578899999
Q ss_pred hhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHH-HH---HHHHHhcCCChH
Q 024016 159 GSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLP---RELALGLASQTVL-GA---ASMVTKSGKHPG 230 (274)
Q Consensus 159 ~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~---~~~~~~~~~~~~~-~~---~~~~~~~~~~~~ 230 (274)
+.+|.. +++++++||.+++.+++.+++.+..+..+.. ..... ......+..++|+ ++ .|++. .+|.
T Consensus 144 ~~~Ga~v~~~~aeeHD~~~A~vS~LsHl~~l~~~~~~~---~~~~~~~~~~~~~~f~~~gFr~d~t~iTRIAs---s~P~ 217 (370)
T PRK08818 144 SALQAECVYATPEHHDRVMALVQAMVHATHLAQAGVLR---DYAPLLGELRALMPYRSASFELDTAVIARILS---LNPS 217 (370)
T ss_pred HHcCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcccchhhhhhhccccchhhHHHhhhcchhhc---CCHH
Confidence 999965 8899999999999998888776654444332 11110 1111245566666 33 46653 6899
Q ss_pred HHHHhcCCCCchHHHHHHHHHhC--CHHHHHHH----HHHHH---HHHHhh
Q 024016 231 QLKDDVASPGGTTIAGIHELEKS--GFRGILMN----AVVAA---AKRSRE 272 (274)
Q Consensus 231 ~~~~~~~~~~g~t~~~l~~l~~~--~~~~~~~~----a~~~~---~~r~~~ 272 (274)
+|.+.+.++. ...+.++.+.+. .+...+.+ ++.+. ++++++
T Consensus 218 mW~dI~~~N~-~i~~~l~~~~~~L~~l~~~i~~~D~~~~~~~~~~f~~a~~ 267 (370)
T PRK08818 218 IYEDIQFGNP-YVGEMLDRLLAQLQELRALVAQGDDAARARFRAQFLHANA 267 (370)
T ss_pred HHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 9999999988 777777777653 44444432 34445 566655
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.4e-20 Score=160.19 Aligned_cols=193 Identities=19% Similarity=0.181 Sum_probs=142.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----cC--------------ceeccCchhhcc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IG--------------VKVLSDNNAVVE 70 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-----~g--------------~~~~~~~~~~~~ 70 (274)
.+||+|||+|.||.+|+..|.++|+ +|++| ++++++.+.+.+ .+ ++..++..++++
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~----~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 78 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGL----QVVLI-DVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVS 78 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCC----eEEEE-ECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhc
Confidence 4689999999999999999999999 99999 999988776653 12 234556667788
Q ss_pred CCCEEEEeeCccc--HHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEecCCCCC
Q 024016 71 YSDVVVFSVKPQV--VKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTAT 147 (274)
Q Consensus 71 ~aDiIil~v~~~~--~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~~~~~~ 147 (274)
+||+||+|+|++. ..+++.++.+.++++++|+|.+++++.+.+++.++ ..++++.||+.|..... ...+++++..+
T Consensus 79 ~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~~~-l~~i~~g~~t~ 157 (311)
T PRK06130 79 GADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPADVIP-LVEVVRGDKTS 157 (311)
T ss_pred cCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCccCc-eEEEeCCCCCC
Confidence 9999999998764 67888888877778878888889999999988775 35789999998876655 44566777788
Q ss_pred HHHHHHHHHHhhhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 024016 148 EEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQT 214 (274)
Q Consensus 148 ~~~~~~v~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~ 214 (274)
++.++.++++|+.+|.. ++++.+....+ . ...+...+.+++. .+.+.|+++++..+++..+
T Consensus 158 ~~~~~~v~~l~~~~G~~~v~~~~d~~G~i---~--nr~~~~~~~Ea~~-l~~~g~~~~~~id~~~~~~ 219 (311)
T PRK06130 158 PQTVATTMALLRSIGKRPVLVKKDIPGFI---A--NRIQHALAREAIS-LLEKGVASAEDIDEVVKWS 219 (311)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCCCCcH---H--HHHHHHHHHHHHH-HHHcCCCCHHHHHHHHHhc
Confidence 99999999999999975 66654321110 0 0111222222321 2346678999888877543
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-19 Score=163.40 Aligned_cols=191 Identities=15% Similarity=0.161 Sum_probs=141.3
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc-----CceeccCchhhc---cCCCEEEEeeCc-c
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-----GVKVLSDNNAVV---EYSDVVVFSVKP-Q 82 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~-----g~~~~~~~~~~~---~~aDiIil~v~~-~ 82 (274)
+|||||+|+||.+|+++|.++|| +|++| ||++++.+.+.+. ++..+.++.+++ +++|+||+|+|+ +
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~----~V~v~-drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~ 75 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF----TVSVY-NRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGA 75 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCC----eEEEE-eCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcH
Confidence 48999999999999999999999 99999 9999999998864 255666777765 468999999987 6
Q ss_pred cHHHHHHHhccccCCCCEEEEecCCCCHHH--HHHhhC--CCceEEEc-CCcHHhhcCCceEEecCCCCCHHHHHHHHHH
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSVAAGVKLKD--LQEWTG--HSRFIRVM-PNTPSAVGEAATVMSLGGTATEEDGELIGKL 157 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~~~g~~~~~--l~~~~~--~~~~~~~~-p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~l 157 (274)
.+.+++.++.+.+++|++||+++++...+. ..+.+. +..++.+. ...+.....|.+++..| +++++++++++
T Consensus 76 ~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~~im~GG---~~~a~~~~~p~ 152 (467)
T TIGR00873 76 PVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGPSIMPGG---SAEAWPLVAPI 152 (467)
T ss_pred HHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCCcCCCCC---CHHHHHHHHHH
Confidence 789999999999999999999876554332 222232 34444432 23444556677555443 78999999999
Q ss_pred hhhcCCe-------EEcCccchhhHHHhhcchHHHHHHHHHHHHHHH----HHcCCCHHHHHHHHH
Q 024016 158 FGSVGKI-------WRADEKLFDAITGLSGSGPAYIFLAIEALADGG----VAAGLPRELALGLAS 212 (274)
Q Consensus 158 l~~~g~~-------~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~----~~~Gl~~~~~~~~~~ 212 (274)
|+.++.. .++++..-.....++. +.+.+..+++++|+. .+.|++.++..+++.
T Consensus 153 L~~ia~~~~~~~~~~~~G~~GsG~~vKmvh--N~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~ 216 (467)
T TIGR00873 153 FQKIAAKVDGEPCCTWIGPDGAGHYVKMVH--NGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFT 216 (467)
T ss_pred HHHHhhhcCCCCceEEECCcCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 9999842 5788765555555543 445556677777763 259999999888883
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.7e-19 Score=152.14 Aligned_cols=154 Identities=18% Similarity=0.231 Sum_probs=127.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH-----------HHHHcC-------------ceecc
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD-----------AFESIG-------------VKVLS 63 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~-----------~l~~~g-------------~~~~~ 63 (274)
|+++||+|||+|.||.+++..|.++|+ +|++| |+++++.+ .+.+.| ++..+
T Consensus 1 ~~~~kI~VIG~G~mG~~ia~~la~~g~----~V~~~-d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~ 75 (282)
T PRK05808 1 MGIQKIGVIGAGTMGNGIAQVCAVAGY----DVVMV-DISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTT 75 (282)
T ss_pred CCccEEEEEccCHHHHHHHHHHHHCCC----ceEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC
Confidence 345689999999999999999999999 99999 99998874 233333 33344
Q ss_pred CchhhccCCCEEEEeeCcccH--HHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEE
Q 024016 64 DNNAVVEYSDVVVFSVKPQVV--KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVM 140 (274)
Q Consensus 64 ~~~~~~~~aDiIil~v~~~~~--~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i 140 (274)
+. +.+++||+||+|+|++.. .+++.++.+.++++++++|.+++++++.+++.++ ..++++.||+.|.....+.. +
T Consensus 76 ~~-~~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~ve-v 153 (282)
T PRK05808 76 DL-DDLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVE-I 153 (282)
T ss_pred CH-HHhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEE-E
Confidence 54 447899999999986543 6889999998999998889999999999988875 35899999999988877775 6
Q ss_pred ecCCCCCHHHHHHHHHHhhhcCCe-EEcC
Q 024016 141 SLGGTATEEDGELIGKLFGSVGKI-WRAD 168 (274)
Q Consensus 141 ~~~~~~~~~~~~~v~~ll~~~g~~-~~~~ 168 (274)
+.+...+++..+.+.++++.+|+. +++.
T Consensus 154 ~~g~~t~~e~~~~~~~l~~~lGk~pv~~~ 182 (282)
T PRK05808 154 IRGLATSDATHEAVEALAKKIGKTPVEVK 182 (282)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCeeEEec
Confidence 778888999999999999999986 6654
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.3e-19 Score=167.27 Aligned_cols=239 Identities=15% Similarity=0.123 Sum_probs=164.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhc-cCCCEEEEeeCcccHHHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVV-EYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~-~~aDiIil~v~~~~~~~v 87 (274)
+++||||||+|+||.+++++|.+.|+ +|++| +|+..+ +...+.|+....+..+++ .++|+||+|||++.+.++
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~----~V~~~-dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~~~~~~v 124 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGH----TVLAH-SRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCTSIISTENV 124 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCC----EEEEE-eCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcCCHHHHHHH
Confidence 34799999999999999999999998 99999 998544 445557887777777755 569999999999999999
Q ss_pred HHHhc-cccCCCCEEEEecCCCCH---HHHHHhhC-CCceEEEcCCcHHh-h---cCCceEEec----C-CCCCHHHHHH
Q 024016 88 AMQIR-PLLSRKKLLVSVAAGVKL---KDLQEWTG-HSRFIRVMPNTPSA-V---GEAATVMSL----G-GTATEEDGEL 153 (274)
Q Consensus 88 ~~~i~-~~l~~~~~vis~~~g~~~---~~l~~~~~-~~~~~~~~p~~~~~-~---~~g~~~i~~----~-~~~~~~~~~~ 153 (274)
+.++. +.++++++|+++. +++. +.+.+.++ +..+++.||....+ . -.+...++. + +....+.+++
T Consensus 125 l~~l~~~~l~~g~iVvDv~-SvK~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (667)
T PLN02712 125 LKSLPLQRLKRNTLFVDVL-SVKEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKS 203 (667)
T ss_pred HHhhhhhcCCCCeEEEECC-CCcHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHHH
Confidence 99886 6688899888874 4443 34556665 45789999974222 1 122222222 1 1112345677
Q ss_pred HHHHhhhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHHHHhcCCCh
Q 024016 154 IGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLP---RELALGLASQTVLGAASMVTKSGKHP 229 (274)
Q Consensus 154 v~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (274)
++++|+.+|.. +.++.++||.++|.+++.|++++..+..+.. ....+. .+...+++ .+++. .+|
T Consensus 204 l~~l~~~lGa~v~~ms~eeHD~~~A~vshLpH~la~~L~~~~~--~~~~~~~~~~~~~l~l~-------~Ria~---~~p 271 (667)
T PLN02712 204 FLEVFEREGCKMVEMSCTEHDKYAAESQFITHTVGRVLEMLKL--ESTPINTKGYESLLDLV-------ENTCG---DSF 271 (667)
T ss_pred HHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHhcc--cccccCCccHHHHHHHH-------HHHhc---CCH
Confidence 88999999965 8899999999999999999876654432210 001121 22222222 45553 589
Q ss_pred HHHHHhcCCCCchHHHHHHHHHhC--CHHHHHHHHHHHHH
Q 024016 230 GQLKDDVASPGGTTIAGIHELEKS--GFRGILMNAVVAAA 267 (274)
Q Consensus 230 ~~~~~~~~~~~g~t~~~l~~l~~~--~~~~~~~~a~~~~~ 267 (274)
+.|.+.+..+. ...+.++.+++. .++..+..-++..+
T Consensus 272 ~L~~dI~~~N~-~~~~~l~~~~~~l~~~~~~l~~~~~~~~ 310 (667)
T PLN02712 272 DLYYGLFMYNK-NSLEMLERLDLAFEALRKQLFGRLHGVV 310 (667)
T ss_pred HHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998887 777778887664 55555544444433
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.7e-19 Score=153.52 Aligned_cols=194 Identities=22% Similarity=0.273 Sum_probs=136.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc--------------CceeccCchhhccCCCEEE
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--------------GVKVLSDNNAVVEYSDVVV 76 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~--------------g~~~~~~~~~~~~~aDiIi 76 (274)
|||+|||+|+||++|+..|.++|+ +|++| +|++++.+.+.+. ++...+++.+.++++|+||
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 76 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGH----DVTLW-ARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLIL 76 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEE
Confidence 689999999999999999999999 99999 9999988888764 3455567777888999999
Q ss_pred EeeCcccHHHHHHHhccccCCCCEEEEecCCCCH-------HHHHHhhCC--CceEEEcCCcHHhhcCCc--eEEecCCC
Q 024016 77 FSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL-------KDLQEWTGH--SRFIRVMPNTPSAVGEAA--TVMSLGGT 145 (274)
Q Consensus 77 l~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~-------~~l~~~~~~--~~~~~~~p~~~~~~~~g~--~~i~~~~~ 145 (274)
+|||++++++++.++.+.+++++++|++++|+.. +.+++..+. .......|+.+...+.|. ..+..+
T Consensus 77 ~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~-- 154 (325)
T PRK00094 77 VAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIAS-- 154 (325)
T ss_pred EeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEEe--
Confidence 9999999999999999888899999999888775 334444442 223445677766554443 222222
Q ss_pred CCHHHHHHHHHHhhhcCCeEEcCccchh---------h-------HHHhhcchHHHHHHHHHHHHHH---HHHcCCCHHH
Q 024016 146 ATEEDGELIGKLFGSVGKIWRADEKLFD---------A-------ITGLSGSGPAYIFLAIEALADG---GVAAGLPREL 206 (274)
Q Consensus 146 ~~~~~~~~v~~ll~~~g~~~~~~e~~~~---------~-------~~a~~~~~~~~~~~~~~~l~e~---~~~~Gl~~~~ 206 (274)
.+.+..+++.++|+..|......++... . ...+.-..+.........+.|. +++.|++++.
T Consensus 155 ~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~d~~~ 234 (325)
T PRK00094 155 TDEELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALGANPET 234 (325)
T ss_pred CCHHHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCChhh
Confidence 3688899999999998865333222111 1 1111111122334444555554 4689999998
Q ss_pred HHHHH
Q 024016 207 ALGLA 211 (274)
Q Consensus 207 ~~~~~ 211 (274)
+.++.
T Consensus 235 ~~~~~ 239 (325)
T PRK00094 235 FLGLA 239 (325)
T ss_pred hhccc
Confidence 87764
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-19 Score=153.91 Aligned_cols=225 Identities=21% Similarity=0.243 Sum_probs=160.2
Q ss_pred HHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce--eccCchhhccCCCEEEEeeCcccHHHHHHHhccccCCCCEEE
Q 024016 25 IAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK--VLSDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 25 ~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~--~~~~~~~~~~~aDiIil~v~~~~~~~v~~~i~~~l~~~~~vi 102 (274)
+|+.|.++|+ ..+|+.| |++++..+...+.|+. ..++ .+.++++|+||+|||+..+.+++.++.++++++++|+
T Consensus 1 ~A~aL~~~g~--~~~v~g~-d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~DlvvlavP~~~~~~~l~~~~~~~~~~~iv~ 76 (258)
T PF02153_consen 1 IALALRKAGP--DVEVYGY-DRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAVPVSAIEDVLEEIAPYLKPGAIVT 76 (258)
T ss_dssp HHHHHHHTTT--TSEEEEE--SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S-HHHHHHHHHHHHCGS-TTSEEE
T ss_pred ChHHHHhCCC--CeEEEEE-eCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcCCHHHHHHHHHHhhhhcCCCcEEE
Confidence 5788999983 1289999 9999998888777764 2233 5778999999999999999999999999999998888
Q ss_pred EecCCCCH---HHHHHhhC-CCceEEEcCCcHH----------hhcCC-ceEEecCCCCCHHHHHHHHHHhhhcCCe-EE
Q 024016 103 SVAAGVKL---KDLQEWTG-HSRFIRVMPNTPS----------AVGEA-ATVMSLGGTATEEDGELIGKLFGSVGKI-WR 166 (274)
Q Consensus 103 s~~~g~~~---~~l~~~~~-~~~~~~~~p~~~~----------~~~~g-~~~i~~~~~~~~~~~~~v~~ll~~~g~~-~~ 166 (274)
++ ++++. +.+++.++ +.+++..||.... ....| ..++++....+++.++.++++++.+|.. +.
T Consensus 77 Dv-~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~ 155 (258)
T PF02153_consen 77 DV-GSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGARVVE 155 (258)
T ss_dssp E---S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE
T ss_pred Ee-CCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEE
Confidence 76 55554 45556666 6789999986321 11123 3556777666778999999999999964 88
Q ss_pred cCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHH
Q 024016 167 ADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAG 246 (274)
Q Consensus 167 ~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~ 246 (274)
++.++||..+|.+++.|++++.. ++....+.+.+......+..++|+.+++++. .+|..|.+...++.....+.
T Consensus 156 ~~~eeHD~~~A~vshlpH~~a~a---l~~~~~~~~~~~~~~~~~a~~~frd~tRia~---~~p~l~~~I~~~N~~~~~~~ 229 (258)
T PF02153_consen 156 MDAEEHDRIMAYVSHLPHLLASA---LANTLAELSSDDPDILRLAGGGFRDMTRIAS---SDPELWADIFLSNPENLLEA 229 (258)
T ss_dssp --HHHHHHHHHHHTHHHHHHHHH---HHHHHHHHHHHHHHHHHHGTHHHHHHHGGGG---S-HHHHHHHHHHTHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCCChHHHHhhcchhHHhhccccc---CChHHHHHHHHHCHHHHHHH
Confidence 99999999999999999887653 3333333333456677888899999988764 58999999988887777777
Q ss_pred HHHHHhC--CHHHHHH
Q 024016 247 IHELEKS--GFRGILM 260 (274)
Q Consensus 247 l~~l~~~--~~~~~~~ 260 (274)
++.+++. .++..+.
T Consensus 230 l~~~~~~L~~l~~~l~ 245 (258)
T PF02153_consen 230 LDEFIKELNELREALE 245 (258)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777664 4444443
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-18 Score=150.59 Aligned_cols=217 Identities=15% Similarity=0.084 Sum_probs=150.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH-----------HHcC-------------ceeccCch
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF-----------ESIG-------------VKVLSDNN 66 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l-----------~~~g-------------~~~~~~~~ 66 (274)
++|+|||+|.||++|+..|.++|+ +|++| ||++++.+.. .+.| +....+..
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~----~V~v~-d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~ 77 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGH----EVRLW-DADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLA 77 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCC----eeEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHH
Confidence 589999999999999999999999 99999 9998776643 2334 25667777
Q ss_pred hhccCCCEEEEeeCcc--cHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEecC
Q 024016 67 AVVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLG 143 (274)
Q Consensus 67 ~~~~~aDiIil~v~~~--~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~~ 143 (274)
+++++||+||.|+|.+ ....++.++....+++.++.|.+++.....+++.+. ...++..||..|.... ....++++
T Consensus 78 ~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~-~lveiv~~ 156 (308)
T PRK06129 78 DAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLI-PVVEVVPA 156 (308)
T ss_pred HhhCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccC-ceEEEeCC
Confidence 8889999999999865 355667777666666777777777777888888775 2457777887664332 24456777
Q ss_pred CCCCHHHHHHHHHHhhhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Q 024016 144 GTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMV 222 (274)
Q Consensus 144 ~~~~~~~~~~v~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~ 222 (274)
..++++.++.++++++.+|+. ++++++....+.. ..+...+.|++. .+.+.|+++++..+++..++.....+
T Consensus 157 ~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~i~n-----rl~~a~~~EA~~-l~~~g~~~~~~id~~~~~~~g~~~~~- 229 (308)
T PRK06129 157 PWTAPATLARAEALYRAAGQSPVRLRREIDGFVLN-----RLQGALLREAFR-LVADGVASVDDIDAVIRDGLGLRWSF- 229 (308)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEecCCCccHHHH-----HHHHHHHHHHHH-HHHcCCCCHHHHHHHHHhccCCCccC-
Confidence 778999999999999999975 7776543332110 111222233332 24577799999988887655433211
Q ss_pred HhcCCChHHHHHhcCCCCchHHH
Q 024016 223 TKSGKHPGQLKDDVASPGGTTIA 245 (274)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~g~t~~ 245 (274)
..|..+.+. ..|+|....
T Consensus 230 ----~gp~~~~d~-~~~~g~~~~ 247 (308)
T PRK06129 230 ----MGPFETIDL-NAPGGVADY 247 (308)
T ss_pred ----cCHHHHHhc-cccccHHHH
Confidence 245566554 466665444
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-18 Score=151.03 Aligned_cols=208 Identities=21% Similarity=0.224 Sum_probs=146.0
Q ss_pred CeEEEEcccHH--------------------HHHHHHHHHhCCCCCCCcEEEEeCCCHH-----HHHHHHHcCceeccCc
Q 024016 11 FILGFIGAGKM--------------------AESIAKGVAKSGVLPPDRICTAVHSNLK-----RRDAFESIGVKVLSDN 65 (274)
Q Consensus 11 ~~IgiIG~G~m--------------------G~~~a~~L~~~g~~~~~~v~v~~~r~~~-----~~~~l~~~g~~~~~~~ 65 (274)
|||.|.|+||- |.+||.+|.++|| +|++| ||+++ +.+.+.+.|+.+++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~----~V~v~-Dr~~~~l~~~~~~~l~~~Gi~~asd~ 75 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGH----DVVLA-EPNRSILSEELWKKVEDAGVKVVSDD 75 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCC----eEEEE-ECCHHHhhHHHHHHHHHCCCEEeCCH
Confidence 68999999984 8899999999999 99999 99987 4455666888888888
Q ss_pred hhhccCCCEEEEeeCccc-HHHHHHHhccccCCCCEEEEecCCCCHH----HHHHhhC-CCceEEEcCCcHHhh----cC
Q 024016 66 NAVVEYSDVVVFSVKPQV-VKDVAMQIRPLLSRKKLLVSVAAGVKLK----DLQEWTG-HSRFIRVMPNTPSAV----GE 135 (274)
Q Consensus 66 ~~~~~~aDiIil~v~~~~-~~~v~~~i~~~l~~~~~vis~~~g~~~~----~l~~~~~-~~~~~~~~p~~~~~~----~~ 135 (274)
.+++++||+||+|+|++. +++++.++.+.++++++||+++++ +.. .+++.++ ..+..++++.+|..+ ..
T Consensus 76 ~eaa~~ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST~-~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g 154 (342)
T PRK12557 76 AEAAKHGEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCTV-SPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTPQH 154 (342)
T ss_pred HHHHhCCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecCC-CHHHHHHHHHHHhcccccccCeeecCCccccccccc
Confidence 888999999999999887 899999999999899998987554 433 3445554 122334444444322 23
Q ss_pred CceEEecC-----CCCCHHHHHHHHHHhhhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHH---HHHcCCCHH-
Q 024016 136 AATVMSLG-----GTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRE- 205 (274)
Q Consensus 136 g~~~i~~~-----~~~~~~~~~~v~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~~Gl~~~- 205 (274)
+.+++..+ ...+++.+++++++|+.+|.. +++++...+. ..-..+.+.+....++.|+ +++.|.+++
T Consensus 155 ~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~~~g~~~~---vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~ 231 (342)
T PRK12557 155 GHYVIAGKTTNGTELATEEQIEKCVELAESIGKEPYVVPADVVSA---VADMGSLVTAVALSGVLDYYSVGTKIIKAPKE 231 (342)
T ss_pred hheEEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEeCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 34454422 234788899999999999975 6677532222 1112223333344444444 346666654
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC
Q 024016 206 LALGLASQTVLGAASMVTKSGK 227 (274)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~ 227 (274)
.+.+++.+++.+++.+++++|.
T Consensus 232 ~~~~~~~~~~~~~a~l~~~~~~ 253 (342)
T PRK12557 232 MIEKQILMTLQTMASLVETSGV 253 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHhCh
Confidence 6778999999999999987663
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.8e-18 Score=148.46 Aligned_cols=195 Identities=18% Similarity=0.191 Sum_probs=135.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc--------C------ceeccCchhhccCCCE
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--------G------VKVLSDNNAVVEYSDV 74 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~--------g------~~~~~~~~~~~~~aDi 74 (274)
.+|||+|||+|+||++|+.+|.++|| +|++| +|++++.+.+.+. | +...+++.++++++|+
T Consensus 3 ~~m~I~iIG~G~mG~~ia~~L~~~G~----~V~~~-~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~ 77 (328)
T PRK14618 3 HGMRVAVLGAGAWGTALAVLAASKGV----PVRLW-ARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADF 77 (328)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCE
Confidence 45799999999999999999999999 99999 9999888877753 3 3455677788889999
Q ss_pred EEEeeCcccHHHHHHHhccccCCCCEEEEecCCCC-----HHHHHHhhCC---Cc-eEEEcCCcHHhhcCCceEEecCCC
Q 024016 75 VVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVK-----LKDLQEWTGH---SR-FIRVMPNTPSAVGEAATVMSLGGT 145 (274)
Q Consensus 75 Iil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~-----~~~l~~~~~~---~~-~~~~~p~~~~~~~~g~~~i~~~~~ 145 (274)
||+|+|+++++++++.+ +++.++|++++|+. ...+.+.++. .. .+...|+.+...+.+...+....+
T Consensus 78 Vi~~v~~~~~~~v~~~l----~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~~~~ 153 (328)
T PRK14618 78 AVVAVPSKALRETLAGL----PRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATVVAS 153 (328)
T ss_pred EEEECchHHHHHHHHhc----CcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEEEEe
Confidence 99999999988887654 46778999988875 3455555421 22 345678888777665422111112
Q ss_pred CCHHHHHHHHHHhhhcCCeEEcCccchh---------hHHHhhcc-------hHHHHHHHHHHHHHH---HHHcCCCHHH
Q 024016 146 ATEEDGELIGKLFGSVGKIWRADEKLFD---------AITGLSGS-------GPAYIFLAIEALADG---GVAAGLPREL 206 (274)
Q Consensus 146 ~~~~~~~~v~~ll~~~g~~~~~~e~~~~---------~~~a~~~~-------~~~~~~~~~~~l~e~---~~~~Gl~~~~ 206 (274)
.+++.+++++++|+..|..++.+++... .....+|. .+...+.+..++.|. +++.|++++.
T Consensus 154 ~~~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~~~~~ 233 (328)
T PRK14618 154 PEPGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGAEEAT 233 (328)
T ss_pred CCHHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 3788899999999999976554433211 11111111 112233445555554 4689999999
Q ss_pred HHHHHH
Q 024016 207 ALGLAS 212 (274)
Q Consensus 207 ~~~~~~ 212 (274)
++++..
T Consensus 234 ~~~~~~ 239 (328)
T PRK14618 234 FYGLSG 239 (328)
T ss_pred hhcCcc
Confidence 888755
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-17 Score=144.58 Aligned_cols=155 Identities=17% Similarity=0.203 Sum_probs=122.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH-----------HHHcC------------ceeccCc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA-----------FESIG------------VKVLSDN 65 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~-----------l~~~g------------~~~~~~~ 65 (274)
..+||+|||+|.||.+||..|+++|+ +|++| |+++++.+. +.+.| .....+.
T Consensus 3 ~~~~V~vIG~G~mG~~iA~~l~~~G~----~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 77 (295)
T PLN02545 3 EIKKVGVVGAGQMGSGIAQLAAAAGM----DVWLL-DSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTN 77 (295)
T ss_pred CcCEEEEECCCHHHHHHHHHHHhcCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCC
Confidence 44689999999999999999999999 99999 999987653 22222 2223344
Q ss_pred hhhccCCCEEEEeeC--cccHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEec
Q 024016 66 NAVVEYSDVVVFSVK--PQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSL 142 (274)
Q Consensus 66 ~~~~~~aDiIil~v~--~~~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~ 142 (274)
.+.+++||+||+|+| ++....++.++.+.++++++++|.++++++..+++.+. ..++++.|+..|...... ..++.
T Consensus 78 ~~~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~l-veiv~ 156 (295)
T PLN02545 78 LEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKL-VEIIR 156 (295)
T ss_pred HHHhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCce-EEEeC
Confidence 567899999999998 66677788888888889988888899999999988776 367888988776655433 45667
Q ss_pred CCCCCHHHHHHHHHHhhhcCCe-EEcCc
Q 024016 143 GGTATEEDGELIGKLFGSVGKI-WRADE 169 (274)
Q Consensus 143 ~~~~~~~~~~~v~~ll~~~g~~-~~~~e 169 (274)
+...+++.++.++++|+.+|+. +++.+
T Consensus 157 g~~t~~e~~~~~~~ll~~lG~~~~~~~d 184 (295)
T PLN02545 157 GADTSDEVFDATKALAERFGKTVVCSQD 184 (295)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeeEEecC
Confidence 7778999999999999999986 55543
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-17 Score=143.92 Aligned_cols=155 Identities=22% Similarity=0.272 Sum_probs=121.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----------cC-------------ceecc
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------IG-------------VKVLS 63 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-----------~g-------------~~~~~ 63 (274)
|+.+||+|||+|.||.+||..|.++|+ +|++| +|++++++.+.+ .| ++..+
T Consensus 2 ~~~~kI~vIGaG~mG~~iA~~la~~G~----~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 76 (292)
T PRK07530 2 MAIKKVGVIGAGQMGNGIAHVCALAGY----DVLLN-DVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTAT 76 (292)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeC
Confidence 355799999999999999999999999 99999 999988765432 13 34445
Q ss_pred CchhhccCCCEEEEeeCcc--cHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEE
Q 024016 64 DNNAVVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVM 140 (274)
Q Consensus 64 ~~~~~~~~aDiIil~v~~~--~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i 140 (274)
+. +.+++||+||.|+|.+ ..+.++.++.+.++++++++|.++++++..+++.+. ..++++.|+..|.....+. .+
T Consensus 77 ~~-~~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~v-ei 154 (292)
T PRK07530 77 DL-EDLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMKLV-EL 154 (292)
T ss_pred CH-HHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceE-EE
Confidence 55 4578999999999864 356777888888899999998889999888887764 2467777766665544444 45
Q ss_pred ecCCCCCHHHHHHHHHHhhhcCCe-EEcCc
Q 024016 141 SLGGTATEEDGELIGKLFGSVGKI-WRADE 169 (274)
Q Consensus 141 ~~~~~~~~~~~~~v~~ll~~~g~~-~~~~e 169 (274)
..+..++++.++.+.++++.+|+. +++.+
T Consensus 155 ~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d 184 (292)
T PRK07530 155 IRGIATDEATFEAAKEFVTKLGKTITVAED 184 (292)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCeEEEecC
Confidence 667778999999999999999975 66544
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.5e-18 Score=142.23 Aligned_cols=151 Identities=23% Similarity=0.330 Sum_probs=119.6
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc--------Cc--e-eccCchhhccCCCEEEEe
Q 024016 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--------GV--K-VLSDNNAVVEYSDVVVFS 78 (274)
Q Consensus 11 ~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~--------g~--~-~~~~~~~~~~~aDiIil~ 78 (274)
|||+||| +|+||++++..|.++|+ +|++| +|++++.+.+.+. |. . ...+..+.++++|+||+|
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~----~V~v~-~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVila 75 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGN----KIIIG-SRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILA 75 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC----EEEEE-EcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEE
Confidence 5899997 89999999999999998 99999 9999888766541 22 1 123556778899999999
Q ss_pred eCcccHHHHHHHhccccCCCCEEEEecCCCCH-----------------HHHHHhhCC-CceEEEcCCcHHhhcC-----
Q 024016 79 VKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL-----------------KDLQEWTGH-SRFIRVMPNTPSAVGE----- 135 (274)
Q Consensus 79 v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~-----------------~~l~~~~~~-~~~~~~~p~~~~~~~~----- 135 (274)
+|++.+.+++.++.+.+. +++|||+++|++. +.+++++|+ .++++.+|+.+.....
T Consensus 76 vp~~~~~~~l~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a~~~~~~~~~ 154 (219)
T TIGR01915 76 VPWDHVLKTLESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSAVLLQDVDDE 154 (219)
T ss_pred CCHHHHHHHHHHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCHHHhcCCCCC
Confidence 999999999998877664 4899999999876 567888886 7899999988765432
Q ss_pred -CceEEecCCCCCHHHHHHHHHHhhhc-CCe-EEcCc
Q 024016 136 -AATVMSLGGTATEEDGELIGKLFGSV-GKI-WRADE 169 (274)
Q Consensus 136 -g~~~i~~~~~~~~~~~~~v~~ll~~~-g~~-~~~~e 169 (274)
+...+++|+ ++++.+.+..+.+.+ |.. +..+.
T Consensus 155 ~~~~~~v~Gd--d~~ak~~v~~L~~~~~G~~~vd~G~ 189 (219)
T TIGR01915 155 VDCDVLVCGD--DEEAKEVVAELAGRIDGLRALDAGP 189 (219)
T ss_pred CCCCEEEECC--CHHHHHHHHHHHHhcCCCCcccCCc
Confidence 233455554 577889999999999 864 66553
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-17 Score=142.29 Aligned_cols=154 Identities=18% Similarity=0.271 Sum_probs=124.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--------------cC-------------cee
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------------IG-------------VKV 61 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~--------------~g-------------~~~ 61 (274)
+..||+|||+|.||.+|+..|.++|+ +|++| |+++++.+...+ .| +..
T Consensus 2 ~i~~I~ViGaG~mG~~iA~~la~~G~----~V~l~-d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~ 76 (291)
T PRK06035 2 DIKVIGVVGSGVMGQGIAQVFARTGY----DVTIV-DVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT 76 (291)
T ss_pred CCcEEEEECccHHHHHHHHHHHhcCC----eEEEE-eCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe
Confidence 34689999999999999999999999 99999 999987754321 12 123
Q ss_pred ccCchhhccCCCEEEEeeCccc--HHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCce
Q 024016 62 LSDNNAVVEYSDVVVFSVKPQV--VKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAAT 138 (274)
Q Consensus 62 ~~~~~~~~~~aDiIil~v~~~~--~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~ 138 (274)
.++. +.+++||+||+|+|++. ..+++.++.+.++++++++|.++++++..+++.+. ..++++.|+..|.....++.
T Consensus 77 ~~~~-~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vE 155 (291)
T PRK06035 77 STSY-ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIE 155 (291)
T ss_pred eCCH-HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEE
Confidence 3333 56789999999998764 67788888888889999999999999999988775 35789999998877666655
Q ss_pred EEecCCCCCHHHHHHHHHHhhhcCCe-EEcCc
Q 024016 139 VMSLGGTATEEDGELIGKLFGSVGKI-WRADE 169 (274)
Q Consensus 139 ~i~~~~~~~~~~~~~v~~ll~~~g~~-~~~~e 169 (274)
+ ..+...+++.++.+.++++.+|+. +++.+
T Consensus 156 v-~~g~~T~~e~~~~~~~~~~~lgk~~v~v~d 186 (291)
T PRK06035 156 V-VRAALTSEETFNTTVELSKKIGKIPIEVAD 186 (291)
T ss_pred E-eCCCCCCHHHHHHHHHHHHHcCCeEEEeCC
Confidence 4 478888999999999999999976 66654
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.5e-17 Score=140.17 Aligned_cols=159 Identities=13% Similarity=0.108 Sum_probs=124.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-------------------------cCceecc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------------------------IGVKVLS 63 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-------------------------~g~~~~~ 63 (274)
..+||+|||+|.||.+||..|..+|+ +|++| ++++++.+.+.+ .+++..+
T Consensus 2 ~~~kIaViGaG~mG~~iA~~la~~G~----~V~l~-d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 76 (287)
T PRK08293 2 DIKNVTVAGAGVLGSQIAFQTAFHGF----DVTIY-DISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTT 76 (287)
T ss_pred CccEEEEECCCHHHHHHHHHHHhcCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeC
Confidence 35689999999999999999999999 99999 999887655432 1234566
Q ss_pred CchhhccCCCEEEEeeCcc--cHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEE
Q 024016 64 DNNAVVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVM 140 (274)
Q Consensus 64 ~~~~~~~~aDiIil~v~~~--~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i 140 (274)
+..+++++||+||.|+|.+ ...+++.++.+.+++++++++.+++.+++.+.+.++ ..+++..||..|... .....+
T Consensus 77 d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~~~-~~lvev 155 (287)
T PRK08293 77 DLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEIWK-NNTAEI 155 (287)
T ss_pred CHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCCCc-CCeEEE
Confidence 7777889999999999855 577888888888888888878888888888877665 356888888777542 234456
Q ss_pred ecCCCCCHHHHHHHHHHhhhcCCe-EEcCccchh
Q 024016 141 SLGGTATEEDGELIGKLFGSVGKI-WRADEKLFD 173 (274)
Q Consensus 141 ~~~~~~~~~~~~~v~~ll~~~g~~-~~~~e~~~~ 173 (274)
++++..+++.++.+.++++.+|+. +.+..+.++
T Consensus 156 v~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pg 189 (287)
T PRK08293 156 MGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPG 189 (287)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCC
Confidence 677788999999999999999975 666544333
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.1e-19 Score=126.86 Aligned_cols=94 Identities=34% Similarity=0.621 Sum_probs=79.7
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceecc-CchhhccCCCEEEEeeCcccHHHHHH
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLS-DNNAVVEYSDVVVFSVKPQVVKDVAM 89 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~-~~~~~~~~aDiIil~v~~~~~~~v~~ 89 (274)
||||||+|+||.+|+++|.++|+ .+.+|+++++|++++.+++.+ .++.... ++.++++++|+||+|+||+++.+++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~-~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~~~~~v~~ 79 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGI-KPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQQLPEVLS 79 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS--GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GGGHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-CceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHHHHHHHHH
Confidence 79999999999999999999994 344898433999999999876 6776655 78899999999999999999999999
Q ss_pred HhccccCCCCEEEEecCC
Q 024016 90 QIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 90 ~i~~~l~~~~~vis~~~g 107 (274)
++ +...+++++||+++|
T Consensus 80 ~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 80 EI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp HH-HHHHTTSEEEEESTT
T ss_pred HH-hhccCCCEEEEeCCC
Confidence 99 667799999999875
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.3e-17 Score=140.38 Aligned_cols=153 Identities=18% Similarity=0.155 Sum_probs=121.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-------c-----------------CceeccCch
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------I-----------------GVKVLSDNN 66 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-------~-----------------g~~~~~~~~ 66 (274)
+||+|||+|.||.+||..|.++|+ +|++| |+++++.+.+.+ . +++.+++..
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~----~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 76 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF----QTTLV-DIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLK 76 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC----cEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHH
Confidence 589999999999999999999999 99999 999988776542 1 134556777
Q ss_pred hhccCCCEEEEeeCccc--HHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhCC-CceEEEcCCcHHhhcCCceEEecC
Q 024016 67 AVVEYSDVVVFSVKPQV--VKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGH-SRFIRVMPNTPSAVGEAATVMSLG 143 (274)
Q Consensus 67 ~~~~~aDiIil~v~~~~--~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~~-~~~~~~~p~~~~~~~~g~~~i~~~ 143 (274)
+.+++||+||+|+|.+. ...++.++.+.+++++++++.+++++++.+.+.+.. .+++..|+..|.+.+ ....++++
T Consensus 77 ~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~-~Lve~v~g 155 (288)
T PRK09260 77 AAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKM-KLVELIRG 155 (288)
T ss_pred HhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccC-ceEEEeCC
Confidence 88999999999998654 346677888888888887777888999888877653 356677776666443 24556777
Q ss_pred CCCCHHHHHHHHHHhhhcCCe-EEcCc
Q 024016 144 GTATEEDGELIGKLFGSVGKI-WRADE 169 (274)
Q Consensus 144 ~~~~~~~~~~v~~ll~~~g~~-~~~~e 169 (274)
+.++++.++.++++++.+|+. +++++
T Consensus 156 ~~t~~~~~~~~~~~l~~lg~~~v~v~d 182 (288)
T PRK09260 156 LETSDETVQVAKEVAEQMGKETVVVNE 182 (288)
T ss_pred CCCCHHHHHHHHHHHHHcCCeEEEecC
Confidence 778999999999999999975 67664
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-16 Score=135.13 Aligned_cols=207 Identities=21% Similarity=0.204 Sum_probs=146.8
Q ss_pred CeEEEEcccHH--------------------HHHHHHHHHhCCCCCCCcEEEEeCCCHHHH-----HHHHHcCceeccCc
Q 024016 11 FILGFIGAGKM--------------------AESIAKGVAKSGVLPPDRICTAVHSNLKRR-----DAFESIGVKVLSDN 65 (274)
Q Consensus 11 ~~IgiIG~G~m--------------------G~~~a~~L~~~g~~~~~~v~v~~~r~~~~~-----~~l~~~g~~~~~~~ 65 (274)
|||.|.|+||- |++||++|+++|| +|++| ||++++. +.+.+.|+..++++
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGh----eV~V~-Drnrsa~e~e~~e~LaeaGA~~AaS~ 75 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGH----DVVLA-EPNREFMSDDLWKKVEDAGVKVVSDD 75 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCC----EEEEE-eCChhhhhhhhhHHHHHCCCeecCCH
Confidence 68999999984 8899999999999 99999 9987654 35777899998899
Q ss_pred hhhccCCCEEEEeeCcc-cHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC--------CCceEEEcCCc-HHhhcC
Q 024016 66 NAVVEYSDVVVFSVKPQ-VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG--------HSRFIRVMPNT-PSAVGE 135 (274)
Q Consensus 66 ~~~~~~aDiIil~v~~~-~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~--------~~~~~~~~p~~-~~~~~~ 135 (274)
.++++++|+||+|+|.. ++++++.++.+++++|+++|++ ++++++.+.+.+. +..+.++||.. |..-++
T Consensus 76 aEAAa~ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~-STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~ 154 (341)
T TIGR01724 76 KEAAKHGEIHVLFTPFGKGTFSIARTIIEHVPENAVICNT-CTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQH 154 (341)
T ss_pred HHHHhCCCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEEC-CCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCC
Confidence 99999999999999855 5789988888889999999976 6677765544332 34567777753 333344
Q ss_pred CceEEec----C-CCCCHHHHHHHHHHhhhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHH---HHH-HHcCCCHH
Q 024016 136 AATVMSL----G-GTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALA---DGG-VAAGLPRE 205 (274)
Q Consensus 136 g~~~i~~----~-~~~~~~~~~~v~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~---e~~-~~~Gl~~~ 205 (274)
+..++.. + .-.++++++++.++.+..|+. +.++.+....+.-+++ ...+....++. +.+ +-.|-+.+
T Consensus 155 ~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~pa~l~~~v~Dm~s---~vta~~~~gil~y~~~~t~i~~ap~~ 231 (341)
T TIGR01724 155 GHYVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYVVPADVTSAVADMGS---LVTAVALAGVLDYYYVGTQIINAPKE 231 (341)
T ss_pred ceeeeccccccccccCCHHHHHHHHHHHHHhCCCeeecchhhcchhhhHHH---HHHHHHHHHHHHHHHHHHHHhcCcHH
Confidence 3333221 1 124689999999999999976 7788766655544432 22122222222 223 34677877
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 024016 206 LALGLASQTVLGAASMVTKSG 226 (274)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~ 226 (274)
.+.+.+..++...+.+++.+|
T Consensus 232 ~~~~~~~~~l~~~a~l~~~~G 252 (341)
T TIGR01724 232 MIEKQILMTLQTMASLVETSG 252 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 777777777777777766554
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-18 Score=130.66 Aligned_cols=115 Identities=17% Similarity=0.319 Sum_probs=82.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCcccHHHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v 87 (274)
..+||+|||+|++|.++++.|.++|| +|..+++|++++.+++.. .+.....+..+.++++|++|++||++.+.++
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~----~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDdaI~~v 84 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGH----EVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDAIAEV 84 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTS----EEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCHHHHH
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCC----eEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHHHHHH
Confidence 35899999999999999999999999 886554999988888776 3444445678889999999999999999999
Q ss_pred HHHhccc--cCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcC
Q 024016 88 AMQIRPL--LSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMP 127 (274)
Q Consensus 88 ~~~i~~~--l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p 127 (274)
.++|... ++++++|+++++..+.+.|+.... ++.+..+||
T Consensus 85 a~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 85 AEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVASLHP 127 (127)
T ss_dssp HHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred HHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEEEeCc
Confidence 9999876 789999999999888887766443 456666665
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.3e-16 Score=137.08 Aligned_cols=158 Identities=16% Similarity=0.156 Sum_probs=121.9
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc---------C------ceeccCchhhcc
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI---------G------VKVLSDNNAVVE 70 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~---------g------~~~~~~~~~~~~ 70 (274)
..+.+|||+|||+|+||++++..|.++| ++++| .|+++..+.+.+. + +...++..++++
T Consensus 3 ~~~~~mkI~IiGaGa~G~alA~~La~~g-----~v~l~-~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~ 76 (341)
T PRK12439 3 AAKREPKVVVLGGGSWGTTVASICARRG-----PTLQW-VRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAAN 76 (341)
T ss_pred cccCCCeEEEECCCHHHHHHHHHHHHCC-----CEEEE-eCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHh
Confidence 3445689999999999999999999987 47889 8999888777642 1 234456667788
Q ss_pred CCCEEEEeeCcccHHHHHHHhccccCCCCEEEEecCCCCH-------HHHHHhhCCCc-eEEEcCCcHHhhcCCceE-Ee
Q 024016 71 YSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL-------KDLQEWTGHSR-FIRVMPNTPSAVGEAATV-MS 141 (274)
Q Consensus 71 ~aDiIil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~-------~~l~~~~~~~~-~~~~~p~~~~~~~~g~~~-i~ 141 (274)
++|+||+|+|++.++++++++.+++++++.+|++++|+.. +.+++.+++.+ .+...|+.+.++..|... ++
T Consensus 77 ~aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~ev~~g~~t~~v 156 (341)
T PRK12439 77 CADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAREVAEGYAAAAV 156 (341)
T ss_pred cCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHHHHHcCCCeEEE
Confidence 9999999999999999999999999888899999999985 46777666333 456779999888777633 22
Q ss_pred cCCCCCHHHHHHHHHHhhhcCCeEEcCcc
Q 024016 142 LGGTATEEDGELIGKLFGSVGKIWRADEK 170 (274)
Q Consensus 142 ~~~~~~~~~~~~v~~ll~~~g~~~~~~e~ 170 (274)
.+ ..+++..+.++.+|+.-+..++.+++
T Consensus 157 ia-~~~~~~~~~v~~lf~~~~~~v~~s~D 184 (341)
T PRK12439 157 LA-MPDQHLATRLSPLFRTRRFRVYTTDD 184 (341)
T ss_pred EE-eCCHHHHHHHHHHhCCCCEEEEEcCc
Confidence 22 22677788899999887765565554
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.5e-16 Score=135.08 Aligned_cols=167 Identities=18% Similarity=0.297 Sum_probs=120.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-----------ccCchhhccCCCEEEEee
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-----------LSDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~-----------~~~~~~~~~~aDiIil~v 79 (274)
|||+|||+|+||+.++..|.++|+ +|+++ +|++++.+.+.+.|..+ .++..+. +++|+||+||
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~----~V~~~-~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~ 74 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGH----DVTLV-ARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAV 74 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC----eEEEE-ECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEec
Confidence 589999999999999999999999 99999 99888888877756532 2334443 8899999999
Q ss_pred CcccHHHHHHHhccccCCCCEEEEecCCCC-HHHHHHhhCCCceE---------EEcCCcHHhhcCCceEEecCCCCCHH
Q 024016 80 KPQVVKDVAMQIRPLLSRKKLLVSVAAGVK-LKDLQEWTGHSRFI---------RVMPNTPSAVGEAATVMSLGGTATEE 149 (274)
Q Consensus 80 ~~~~~~~v~~~i~~~l~~~~~vis~~~g~~-~~~l~~~~~~~~~~---------~~~p~~~~~~~~g~~~i~~~~~~~~~ 149 (274)
|+.+++++++.+.+.+.+++.||++.+|+. .+.+.+.++...++ +..|+...+.+.|...+...+. ..+
T Consensus 75 k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~~ig~~~~-~~~ 153 (304)
T PRK06522 75 KAYQLPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRLKIGEPDG-ESA 153 (304)
T ss_pred ccccHHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCEEEeCCCC-CcH
Confidence 999999999999998888889999999997 46677766643333 2234443344445444432221 234
Q ss_pred HHHHHHHHhhhcCCeEEcCcc-------------chhhHHHhhcchHH
Q 024016 150 DGELIGKLFGSVGKIWRADEK-------------LFDAITGLSGSGPA 184 (274)
Q Consensus 150 ~~~~v~~ll~~~g~~~~~~e~-------------~~~~~~a~~~~~~~ 184 (274)
..+.+.++|+..|..+...++ .++.++++.++.+.
T Consensus 154 ~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g 201 (304)
T PRK06522 154 AAEALADLLNAAGLDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNG 201 (304)
T ss_pred HHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChh
Confidence 467788888888865544443 35667777776543
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.3e-16 Score=140.28 Aligned_cols=182 Identities=14% Similarity=0.176 Sum_probs=136.4
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc-----CceeccCchhhccC---CCEEEEeeCc-ccHHHHHHHh
Q 024016 21 MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-----GVKVLSDNNAVVEY---SDVVVFSVKP-QVVKDVAMQI 91 (274)
Q Consensus 21 mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~-----g~~~~~~~~~~~~~---aDiIil~v~~-~~~~~v~~~i 91 (274)
||..||++|+++|| +|.+| ||++++.+.+.+. |+..+.++.++++. +|+||+|||. +.+++|+.++
T Consensus 1 MG~~mA~nL~~~G~----~V~v~-nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l 75 (459)
T PRK09287 1 MGKNLALNIASHGY----TVAVY-NRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQL 75 (459)
T ss_pred CcHHHHHHHHhCCC----eEEEE-CCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHH
Confidence 89999999999999 99999 9999999999873 47888899988874 8999999985 4689999999
Q ss_pred ccccCCCCEEEEecCCCCHHH--HHHhhC--CCceEEE-cCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCC-e-
Q 024016 92 RPLLSRKKLLVSVAAGVKLKD--LQEWTG--HSRFIRV-MPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGK-I- 164 (274)
Q Consensus 92 ~~~l~~~~~vis~~~g~~~~~--l~~~~~--~~~~~~~-~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~-~- 164 (274)
.+.+.+|.+||++++....+. ..+.+. +..++.+ +...+.....|.+++..| ++++++.++++|+.++. .
T Consensus 76 ~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~siM~GG---~~~a~~~~~piL~~ia~~~~ 152 (459)
T PRK09287 76 LPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGPSIMPGG---QKEAYELVAPILEKIAAKVE 152 (459)
T ss_pred HhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCEEEEeC---CHHHHHHHHHHHHHHhhhhc
Confidence 999999999998866544332 223332 3444443 234455556787665544 78999999999999984 3
Q ss_pred ------EEcCccchhhHHHhhcchHHHHHHHHHHHHHHH---H-HcCCCHHHHHHHHH
Q 024016 165 ------WRADEKLFDAITGLSGSGPAYIFLAIEALADGG---V-AAGLPRELALGLAS 212 (274)
Q Consensus 165 ------~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~---~-~~Gl~~~~~~~~~~ 212 (274)
.++++..-.....++. +.+.+..++++.|+. + +.|++.++..+++.
T Consensus 153 ~g~~c~~~vG~~GaGh~vKmvh--N~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~ 208 (459)
T PRK09287 153 DGEPCVTYIGPDGAGHYVKMVH--NGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFA 208 (459)
T ss_pred CCCCceeeeCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 6788765555555543 445555667777763 4 47999999888883
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-16 Score=138.92 Aligned_cols=182 Identities=20% Similarity=0.252 Sum_probs=123.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~ 88 (274)
+.|||+|||+|+||++|++.|.++|| +|++| +|++. .++.++++++|+||+|+|++.+++++
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~----~V~~~-~r~~~-------------~~~~~~~~~advvi~~vp~~~~~~v~ 64 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGH----RVRVW-SRRSG-------------LSLAAVLADADVIVSAVSMKGVRPVA 64 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCC----EEEEE-eCCCC-------------CCHHHHHhcCCEEEEECChHHHHHHH
Confidence 46799999999999999999999999 99999 99853 35667788999999999999999999
Q ss_pred HHhccc-cCCCCEEEEecCCCCHH-------HHHHhhCCCceEEE-cCCcHHhhcCC--ceEEecCCCCCHHHHHHHHHH
Q 024016 89 MQIRPL-LSRKKLLVSVAAGVKLK-------DLQEWTGHSRFIRV-MPNTPSAVGEA--ATVMSLGGTATEEDGELIGKL 157 (274)
Q Consensus 89 ~~i~~~-l~~~~~vis~~~g~~~~-------~l~~~~~~~~~~~~-~p~~~~~~~~g--~~~i~~~~~~~~~~~~~v~~l 157 (274)
+++.++ +++++++|++++|+.++ .++..+++.+++.. .|+.+..+..+ ...+..+ .+.+..+.++++
T Consensus 65 ~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag--~~~~~~~~v~~l 142 (308)
T PRK14619 65 EQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPNHPVVVLSGPNLSKEIQQGLPAATVVAS--RDLAAAETVQQI 142 (308)
T ss_pred HHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCCCceEEEECCCcHHHHhcCCCeEEEEEe--CCHHHHHHHHHH
Confidence 888764 67888999988766543 23333444455422 35555443333 2233333 268899999999
Q ss_pred hhhcCCeEEcCccch--------hhHHHh-hc-------chHHHHHHHHHHHHHH---HHHcCCCHHHHHHH
Q 024016 158 FGSVGKIWRADEKLF--------DAITGL-SG-------SGPAYIFLAIEALADG---GVAAGLPRELALGL 210 (274)
Q Consensus 158 l~~~g~~~~~~e~~~--------~~~~a~-~~-------~~~~~~~~~~~~l~e~---~~~~Gl~~~~~~~~ 210 (274)
|+..|...+...+.. ..+.++ +| ..+.....+..++.|. +++.|++++.++++
T Consensus 143 l~~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~~~ 214 (308)
T PRK14619 143 FSSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGAQTETFYGL 214 (308)
T ss_pred hCCCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCCccccccc
Confidence 999985533232211 111111 11 1122334455556555 46889998887764
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-15 Score=140.35 Aligned_cols=192 Identities=16% Similarity=0.098 Sum_probs=136.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH-----------HHcC-------------ceeccCc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF-----------ESIG-------------VKVLSDN 65 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l-----------~~~g-------------~~~~~~~ 65 (274)
..||||||+|.||..||..++++|| +|++| |+++++++.. .+.| ++.+++.
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~----~V~l~-D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~ 81 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGH----TVLLY-DARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEAL 81 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH
Confidence 4689999999999999999999999 99999 9999987763 3345 4666676
Q ss_pred hhhccCCCEEEEeeCcc-cHHH-HHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEec
Q 024016 66 NAVVEYSDVVVFSVKPQ-VVKD-VAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSL 142 (274)
Q Consensus 66 ~~~~~~aDiIil~v~~~-~~~~-v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~ 142 (274)
.+ +.+||+||.|++.+ +++. ++.++....++++++.+.+++++++.+++.+. ..+++..|...|.... ....++.
T Consensus 82 ~~-~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~-~LvEvv~ 159 (507)
T PRK08268 82 AD-LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLM-KLVEVVS 159 (507)
T ss_pred HH-hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccC-eeEEEeC
Confidence 55 56999999999844 4554 45667777788888878889999988887665 2466777766655443 3556677
Q ss_pred CCCCCHHHHHHHHHHhhhcCCe-EEcCccchhhHHHhhcchHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 024016 143 GGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYI-FLAIEALADGGVAAGLPRELALGLASQTVL 216 (274)
Q Consensus 143 ~~~~~~~~~~~v~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~-~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~ 216 (274)
+..++++.++.+.++++.+|+. +++++.. . +. .+.++ ..+.+++. .+.+.|.++++..+++...+.
T Consensus 160 g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~p-G----fi--~Nrll~~~~~Ea~~-l~~~g~~~~~~iD~al~~~~G 227 (507)
T PRK08268 160 GLATDPAVADALYALARAWGKTPVRAKDTP-G----FI--VNRAARPYYTEALR-VLEEGVADPATIDAILREAAG 227 (507)
T ss_pred CCCCCHHHHHHHHHHHHHcCCceEEecCCC-C----hH--HHHHHHHHHHHHHH-HHHcCCCCHHHHHHHHHhcCC
Confidence 7788999999999999999975 6766421 0 00 01111 12222221 134555788888877765443
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-15 Score=130.10 Aligned_cols=155 Identities=19% Similarity=0.280 Sum_probs=121.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc--------------CceeccCchhhccCCCEE
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--------------GVKVLSDNNAVVEYSDVV 75 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~--------------g~~~~~~~~~~~~~aDiI 75 (274)
++||+|||.|+||+++|.-|.++|| +|.+| .|+++..+++... ++...+|..++++++|+|
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~----~V~lw-~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~i 75 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGH----EVRLW-GRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADII 75 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCC----eeEEE-ecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEE
Confidence 3699999999999999999999999 99999 9999888777651 234567788889999999
Q ss_pred EEeeCcccHHHHHHHhccccCCCCEEEEecCCCCH-------HHHHHhhCCCceE-EEcCCcHHhhcCCce-EEecCCCC
Q 024016 76 VFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL-------KDLQEWTGHSRFI-RVMPNTPSAVGEAAT-VMSLGGTA 146 (274)
Q Consensus 76 il~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~-------~~l~~~~~~~~~~-~~~p~~~~~~~~g~~-~i~~~~~~ 146 (274)
++++|.+.++++++++.+++++++.+|++++|+.. +.+++.++..++. -.-|++..++.+|.. .++.. ..
T Consensus 76 v~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa~g~pta~~va-s~ 154 (329)
T COG0240 76 VIAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVAQGLPTAVVVA-SN 154 (329)
T ss_pred EEECChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHHhcCCCcEEEEe-cC
Confidence 99999999999999998889999999999999864 3455666643333 245888888877753 33322 23
Q ss_pred CHHHHHHHHHHhhhcCCeEEcCcc
Q 024016 147 TEEDGELIGKLFGSVGKIWRADEK 170 (274)
Q Consensus 147 ~~~~~~~v~~ll~~~g~~~~~~e~ 170 (274)
+.+..++++.+|..=...++.+++
T Consensus 155 d~~~a~~v~~~f~~~~Frvy~~~D 178 (329)
T COG0240 155 DQEAAEKVQALFSSPYFRVYTSTD 178 (329)
T ss_pred CHHHHHHHHHHhCCCcEEEEecCc
Confidence 778888899988873334555655
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.3e-16 Score=132.73 Aligned_cols=155 Identities=13% Similarity=0.162 Sum_probs=121.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----------cC---------ceeccCchh
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------IG---------VKVLSDNNA 67 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-----------~g---------~~~~~~~~~ 67 (274)
+..+||+|||+|.||+.||..++.+|+ +|++| |++++..+.+.+ .| ++..++..+
T Consensus 5 ~~i~~VaVIGaG~MG~giA~~~a~aG~----~V~l~-D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~ 79 (321)
T PRK07066 5 TDIKTFAAIGSGVIGSGWVARALAHGL----DVVAW-DPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEA 79 (321)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHH
Confidence 345789999999999999999999999 99999 999876544321 11 245567778
Q ss_pred hccCCCEEEEeeCcc-cH-HHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEecCC
Q 024016 68 VVEYSDVVVFSVKPQ-VV-KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGG 144 (274)
Q Consensus 68 ~~~~aDiIil~v~~~-~~-~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~~~ 144 (274)
++++||+|+.|+|.+ ++ .+++.++....++++++-|.++++++..+++.+. ..+++..||..|...-. ..-+++++
T Consensus 80 av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~p-LVEVv~g~ 158 (321)
T PRK07066 80 CVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLP-LVEVLGGE 158 (321)
T ss_pred HhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCc-eEEEeCCC
Confidence 889999999999844 34 4677888888889987778778888899988775 36788889877765433 33456788
Q ss_pred CCCHHHHHHHHHHhhhcCCe-EEcC
Q 024016 145 TATEEDGELIGKLFGSVGKI-WRAD 168 (274)
Q Consensus 145 ~~~~~~~~~v~~ll~~~g~~-~~~~ 168 (274)
.++++.++.+..+++.+|+. +++.
T Consensus 159 ~T~~e~~~~~~~f~~~lGk~pV~v~ 183 (321)
T PRK07066 159 RTAPEAVDAAMGIYRALGMRPLHVR 183 (321)
T ss_pred CCCHHHHHHHHHHHHHcCCEeEecC
Confidence 88999999999999999975 6663
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3e-15 Score=131.21 Aligned_cols=154 Identities=13% Similarity=0.208 Sum_probs=108.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc--C------------ceeccCchhhc-cCCCEE
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--G------------VKVLSDNNAVV-EYSDVV 75 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~--g------------~~~~~~~~~~~-~~aDiI 75 (274)
|||+|||+|+||++++..|.++|+ +|++| +|+++..+.+.+. + +...++..+.+ .++|+|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~----~V~l~-~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dli 75 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKI----SVNLW-GRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCI 75 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCC----eEEEE-ecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEE
Confidence 589999999999999999999999 99999 9998888777652 1 12334445555 589999
Q ss_pred EEeeCcccHHHHHHHhcc-ccCCCCEEEEecCCCCH-------HHHHHhhCCCceEE-EcCCcHHhhcCC-ceEEecCCC
Q 024016 76 VFSVKPQVVKDVAMQIRP-LLSRKKLLVSVAAGVKL-------KDLQEWTGHSRFIR-VMPNTPSAVGEA-ATVMSLGGT 145 (274)
Q Consensus 76 il~v~~~~~~~v~~~i~~-~l~~~~~vis~~~g~~~-------~~l~~~~~~~~~~~-~~p~~~~~~~~g-~~~i~~~~~ 145 (274)
|+|||+++++++++++.+ .+.+++.++++++|+.. +.+.+.++..++.. .-|+.+.+...+ .+.+... +
T Consensus 76 iiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~~a~~~~~~~~~~~~~~-~ 154 (326)
T PRK14620 76 ILAVPTQQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPSFAKEIAEKLPCSIVLA-G 154 (326)
T ss_pred EEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCcHHHHHHcCCCcEEEEe-c
Confidence 999999999999999998 88888888889999854 45666666444432 235544444333 2222222 1
Q ss_pred CCHHHHHHHHHHhhhcCCeEEcCcc
Q 024016 146 ATEEDGELIGKLFGSVGKIWRADEK 170 (274)
Q Consensus 146 ~~~~~~~~v~~ll~~~g~~~~~~e~ 170 (274)
.+.+..+.+.++|+.-+...+.+++
T Consensus 155 ~~~~~~~~l~~~l~~~~~~~~~~~D 179 (326)
T PRK14620 155 QNETLGSSLISKLSNENLKIIYSQD 179 (326)
T ss_pred CCHHHHHHHHHHHCCCCeEEEecCc
Confidence 2455556677777666655555554
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-15 Score=139.43 Aligned_cols=154 Identities=18% Similarity=0.172 Sum_probs=120.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH-----------HHcC-------------ceeccC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF-----------ESIG-------------VKVLSD 64 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l-----------~~~g-------------~~~~~~ 64 (274)
+.+||+|||+|.||+.||..+.++|| +|++| ||++++++.. .+.| ++.+++
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~----~V~l~-d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~ 78 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGH----QVLLY-DIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTD 78 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCC
Confidence 45689999999999999999999999 99999 9999887643 2233 345566
Q ss_pred chhhccCCCEEEEeeCcc-cHH-HHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEe
Q 024016 65 NNAVVEYSDVVVFSVKPQ-VVK-DVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMS 141 (274)
Q Consensus 65 ~~~~~~~aDiIil~v~~~-~~~-~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~ 141 (274)
+.+ +.+||+||.|++.+ +++ .++.++....++++++.|.++++++..+.+.+. ..+++..|...|.... ....++
T Consensus 79 ~~~-l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~-~LvEvv 156 (503)
T TIGR02279 79 LHA-LADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVM-ALVEVV 156 (503)
T ss_pred HHH-hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccC-ceEEEe
Confidence 655 56999999999853 444 556777777888888888888999988877765 3467777766655443 356677
Q ss_pred cCCCCCHHHHHHHHHHhhhcCCe-EEcCc
Q 024016 142 LGGTATEEDGELIGKLFGSVGKI-WRADE 169 (274)
Q Consensus 142 ~~~~~~~~~~~~v~~ll~~~g~~-~~~~e 169 (274)
.+..++++.++.+.++++.+|+. +++++
T Consensus 157 ~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d 185 (503)
T TIGR02279 157 SGLATAAEVAEQLYETALAWGKQPVHCHS 185 (503)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCeeeEeCC
Confidence 78888999999999999999986 66654
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=3e-15 Score=128.46 Aligned_cols=152 Identities=20% Similarity=0.230 Sum_probs=118.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH-----------HHHcC-------------ceeccCch
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA-----------FESIG-------------VKVLSDNN 66 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~-----------l~~~g-------------~~~~~~~~ 66 (274)
.||+|||+|.||..||..++.+|+ +|++| |++++..+. +.+.| ++.+++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~----~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~- 79 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV----DVLVF-ETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL- 79 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-
Confidence 489999999999999999999999 99999 999988765 33333 2245565
Q ss_pred hhccCCCEEEEeeCcc-cHH-HHHHHhcccc-CCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEec
Q 024016 67 AVVEYSDVVVFSVKPQ-VVK-DVAMQIRPLL-SRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSL 142 (274)
Q Consensus 67 ~~~~~aDiIil~v~~~-~~~-~v~~~i~~~l-~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~ 142 (274)
+.+++||+||.|+|.+ .++ .++..+.... +++++++|.++++++..++.... ..+++..|+..|......+ -+.+
T Consensus 80 ~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lv-Elv~ 158 (286)
T PRK07819 80 GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLV-ELVP 158 (286)
T ss_pred HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceE-EEeC
Confidence 5689999999999854 344 5556666666 78999999999999998887665 3567888877776554433 4556
Q ss_pred CCCCCHHHHHHHHHHhh-hcCCe-EEcCc
Q 024016 143 GGTATEEDGELIGKLFG-SVGKI-WRADE 169 (274)
Q Consensus 143 ~~~~~~~~~~~v~~ll~-~~g~~-~~~~e 169 (274)
+..++++.++.+.+++. .+|+. +.+.+
T Consensus 159 ~~~T~~~~~~~~~~~~~~~lgk~pv~v~d 187 (286)
T PRK07819 159 TLVTSEATVARAEEFASDVLGKQVVRAQD 187 (286)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCceEecC
Confidence 77889999999999988 59975 66654
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.5e-16 Score=139.87 Aligned_cols=189 Identities=17% Similarity=0.214 Sum_probs=128.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-------------------cC-ceeccCchhhcc
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------------------IG-VKVLSDNNAVVE 70 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-------------------~g-~~~~~~~~~~~~ 70 (274)
|||+|||+|.||.++|..|.++|| +|++| |+++++.+.+.+ .| ++..+++.++++
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~----~V~~~-d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~ 75 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGH----EVTGV-DIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIR 75 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCC----eEEEE-ECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHh
Confidence 589999999999999999999999 99999 999998887663 23 456667777889
Q ss_pred CCCEEEEeeCcc----------cHHHHHHHhccccCCCCEEEEecCCCCH---HHHH-HhhC---CCc-----eEEEcCC
Q 024016 71 YSDVVVFSVKPQ----------VVKDVAMQIRPLLSRKKLLVSVAAGVKL---KDLQ-EWTG---HSR-----FIRVMPN 128 (274)
Q Consensus 71 ~aDiIil~v~~~----------~~~~v~~~i~~~l~~~~~vis~~~g~~~---~~l~-~~~~---~~~-----~~~~~p~ 128 (274)
++|+||+|||.. .+.+++.++.+.++++++||..+ ++++ +.+. ..+. +.. .+...|
T Consensus 76 ~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~S-Tv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~P- 153 (411)
T TIGR03026 76 DADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLES-TVPPGTTEEVVKPILERASGLKLGEDFYLAYNP- 153 (411)
T ss_pred hCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeC-cCCCCchHHHHHHHHHhhcCCCCCCCceEEECC-
Confidence 999999999844 37788888888888999888653 4432 2332 2221 111 122333
Q ss_pred cHHhhcCCce--------EEecCCCCCHHHHHHHHHHhhhcC-C-eEEcCccchhhHHHhhcchHHHHHHHHHHHHHH--
Q 024016 129 TPSAVGEAAT--------VMSLGGTATEEDGELIGKLFGSVG-K-IWRADEKLFDAITGLSGSGPAYIFLAIEALADG-- 196 (274)
Q Consensus 129 ~~~~~~~g~~--------~i~~~~~~~~~~~~~v~~ll~~~g-~-~~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~-- 196 (274)
.....|.. .++.| .+++..++++++++.++ . .++++...-..++.+. .+.|.+..+..+.|.
T Consensus 154 --e~~~~G~~~~~~~~~~~iv~G--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~--~N~~~a~~ia~~nE~~~ 227 (411)
T TIGR03026 154 --EFLREGNAVHDLLNPDRIVGG--ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLA--ENTFRAVKIAFANELAR 227 (411)
T ss_pred --CcCCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 22233321 33334 37899999999999997 3 4666544333444443 245544444444444
Q ss_pred -HHHcCCCHHHHHHHHH
Q 024016 197 -GVAAGLPRELALGLAS 212 (274)
Q Consensus 197 -~~~~Gl~~~~~~~~~~ 212 (274)
+.+.|+|.++..+++.
T Consensus 228 la~~~GiD~~~v~~~~~ 244 (411)
T TIGR03026 228 ICEALGIDVYEVIEAAG 244 (411)
T ss_pred HHHHhCCCHHHHHHHhC
Confidence 5689999998877654
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-14 Score=116.93 Aligned_cols=220 Identities=16% Similarity=0.204 Sum_probs=147.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhcc---CCCEEEEeeCcc-cHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE---YSDVVVFSVKPQ-VVKD 86 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~---~aDiIil~v~~~-~~~~ 86 (274)
|+||.||+|+||..|+++|++.|| +|++| |++++..+.++..|++.++++.+.++ ...+|.++||.. .+..
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~gh----dvV~y-D~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~ 75 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGH----DVVGY-DVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDA 75 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCC----eEEEE-cCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHH
Confidence 689999999999999999999999 99999 99999999999989887777766644 568999999977 6789
Q ss_pred HHHHhccccCCCCEEEEecCCCCHHHHHH--hhC--CCceEEEcCC-cHHhhcCCceEEecCCCCCHHHHHHHHHHhhhc
Q 024016 87 VAMQIRPLLSRKKLLVSVAAGVKLKDLQE--WTG--HSRFIRVMPN-TPSAVGEAATVMSLGGTATEEDGELIGKLFGSV 161 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~~g~~~~~l~~--~~~--~~~~~~~~p~-~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~ 161 (274)
+++++.+.+.+|.+||+--++.--+.+++ .+. +..++.+-.+ .+.-...|.+.+..| +.+.++.++++|+.+
T Consensus 76 vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~~lMiGG---~~~a~~~~~pif~~l 152 (300)
T COG1023 76 VIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGYCLMIGG---DEEAVERLEPIFKAL 152 (300)
T ss_pred HHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCceEEecC---cHHHHHHHHHHHHhh
Confidence 99999999999999998544432333332 122 3455554332 233345677777766 689999999999987
Q ss_pred CC--e--EEcCccchhhHHHhhcchHHHHHHHHHHHHHHH---HHcCCC--HHHHHHH------HHHHHHHHHHHHHhcC
Q 024016 162 GK--I--WRADEKLFDAITGLSGSGPAYIFLAIEALADGG---VAAGLP--RELALGL------ASQTVLGAASMVTKSG 226 (274)
Q Consensus 162 g~--~--~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~---~~~Gl~--~~~~~~~------~~~~~~~~~~~~~~~~ 226 (274)
.. . .++++..-..+..+...+ .=+.++++++|.. ++..+| .++..++ +..-+.+...-+.+.+
T Consensus 153 A~ge~Gyl~~Gp~GsGHfvKMVHNG--IEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~hGSVIrSWLldLt~~Af~~d 230 (300)
T COG1023 153 APGEDGYLYCGPSGSGHFVKMVHNG--IEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKD 230 (300)
T ss_pred CcCcCccccccCCCcchhHHHHhcc--HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcchHHHHHHHHHHHHHhhC
Confidence 63 2 456664333333333322 2234566776653 344444 3332222 2222222222222334
Q ss_pred CChHHHHHhcCCCC
Q 024016 227 KHPGQLKDDVASPG 240 (274)
Q Consensus 227 ~~~~~~~~~~~~~~ 240 (274)
.+.+++...+.+.|
T Consensus 231 ~~L~q~~g~v~dSG 244 (300)
T COG1023 231 PDLDQISGRVSDSG 244 (300)
T ss_pred CCHHHhcCeeccCC
Confidence 46777777776654
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-15 Score=137.71 Aligned_cols=192 Identities=15% Similarity=0.116 Sum_probs=122.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-------------------cCceeccCchhh
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------------------IGVKVLSDNNAV 68 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-------------------~g~~~~~~~~~~ 68 (274)
|.++||+|||+|.||.+||.+|.++|| +|++| |+++++.+.+.. .|....++ .
T Consensus 1 m~~~kI~VIGlG~~G~~~A~~La~~G~----~V~~~-D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~---~ 72 (415)
T PRK11064 1 MSFETISVIGLGYIGLPTAAAFASRQK----QVIGV-DINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATT---T 72 (415)
T ss_pred CCccEEEEECcchhhHHHHHHHHhCCC----EEEEE-eCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeec---c
Confidence 346899999999999999999999999 99999 999999887542 12111111 1
Q ss_pred ccCCCEEEEeeCc----------ccHHHHHHHhccccCCCCEEEEecCCCC---HHHHHHhhCC--C----c--------
Q 024016 69 VEYSDVVVFSVKP----------QVVKDVAMQIRPLLSRKKLLVSVAAGVK---LKDLQEWTGH--S----R-------- 121 (274)
Q Consensus 69 ~~~aDiIil~v~~----------~~~~~v~~~i~~~l~~~~~vis~~~g~~---~~~l~~~~~~--~----~-------- 121 (274)
.++||+||+|||. ..+.++++++.+++++|++||..+ +++ .+.+...+.. . +
T Consensus 73 ~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~S-Tv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~ 151 (415)
T PRK11064 73 PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILES-TSPVGATEQMAEWLAEARPDLTFPQQAGEQAD 151 (415)
T ss_pred cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeC-CCCCCHHHHHHHHHHHhccCCcccccccCCCC
Confidence 3489999999985 467788888999999999888553 333 3344332210 0 1
Q ss_pred -eEEEcC-----CcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHH
Q 024016 122 -FIRVMP-----NTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALA 194 (274)
Q Consensus 122 -~~~~~p-----~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~ 194 (274)
.+-..| ........-...++.+ .+++..++++++++.++.. ++++......++.+.. +.|.+..+..+.
T Consensus 152 f~v~~~PE~~~~G~~~~~~~~~~~vvgG--~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~--N~~~a~~ia~~n 227 (415)
T PRK11064 152 INIAYCPERVLPGQVMVELIKNDRVIGG--MTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTE--NSFRDVNIAFAN 227 (415)
T ss_pred eEEEECCCccCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 011223 1111111112234433 2688899999999999864 5655443344444432 455544444444
Q ss_pred HH---HHHcCCCHHHHHHHHH
Q 024016 195 DG---GVAAGLPRELALGLAS 212 (274)
Q Consensus 195 e~---~~~~Gl~~~~~~~~~~ 212 (274)
|. +.+.|+|.++..+.+.
T Consensus 228 E~~~lae~~GiD~~~v~~~~~ 248 (415)
T PRK11064 228 ELSLICADQGINVWELIRLAN 248 (415)
T ss_pred HHHHHHHHhCCCHHHHHHHhc
Confidence 43 5689999988776554
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-15 Score=132.84 Aligned_cols=147 Identities=16% Similarity=0.188 Sum_probs=104.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-----------------ccCchhhccCC
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-----------------LSDNNAVVEYS 72 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~-----------------~~~~~~~~~~a 72 (274)
+|||+|||+|.||+.++..|.++|+ +|++| +|++. .+.+.+.|..+ .++. +.+.++
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~----~V~~~-~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 74 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGA----DVTLI-GRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATA 74 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCC----cEEEE-ecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhccCC
Confidence 4789999999999999999999999 99999 98753 45565545432 2233 556789
Q ss_pred CEEEEeeCcccHHHHHHHhccccCCCCEEEEecCCCCH-HHHHHhhCCCceEEE-c--------CCcHHhhcCCceEEec
Q 024016 73 DVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL-KDLQEWTGHSRFIRV-M--------PNTPSAVGEAATVMSL 142 (274)
Q Consensus 73 DiIil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~-~~l~~~~~~~~~~~~-~--------p~~~~~~~~g~~~i~~ 142 (274)
|+||+|||+.+..++++.+.+.++++++|+++++|+.. +.+++.++...++.. . |........|...+
T Consensus 75 D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~g~l~~-- 152 (341)
T PRK08229 75 DLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTSGALAI-- 152 (341)
T ss_pred CEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCCCceEe--
Confidence 99999999999999999999888899999999999874 667777764333322 1 11111122333322
Q ss_pred CCCCCHHHHHHHHHHhhhcCCe-EEcC
Q 024016 143 GGTATEEDGELIGKLFGSVGKI-WRAD 168 (274)
Q Consensus 143 ~~~~~~~~~~~v~~ll~~~g~~-~~~~ 168 (274)
+. .+.++.+.++|+..|.. .+.+
T Consensus 153 ~~---~~~~~~~~~~l~~~g~~~~~~~ 176 (341)
T PRK08229 153 EA---SPALRPFAAAFARAGLPLVTHE 176 (341)
T ss_pred cC---CchHHHHHHHHHhcCCCceecc
Confidence 21 24568899999998854 4433
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.9e-14 Score=124.21 Aligned_cols=170 Identities=15% Similarity=0.153 Sum_probs=116.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec-------------cCchhhccCCCE
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-------------SDNNAVVEYSDV 74 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~-------------~~~~~~~~~aDi 74 (274)
++.|||+|||+|.||+.+|..|.++|+ +|+++ .|++. +.+.+.|+... .+..+....+|+
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~----~V~~~-~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 75 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAGF----DVHFL-LRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDW 75 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCCC----eEEEE-EeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCE
Confidence 456899999999999999999999999 99999 88763 34444443321 112234567999
Q ss_pred EEEeeCcccHHHHHHHhccccCCCCEEEEecCCCCH-HHHHHhhCCCceEEEcC------CcHH---hhcCCceEEecCC
Q 024016 75 VVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL-KDLQEWTGHSRFIRVMP------NTPS---AVGEAATVMSLGG 144 (274)
Q Consensus 75 Iil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~-~~l~~~~~~~~~~~~~p------~~~~---~~~~g~~~i~~~~ 144 (274)
||+|||..++.++++.+.+.+.+++.++++.+|+.. +.+++.++..+++.... ..|. +.+.|.+.+....
T Consensus 76 vilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~ 155 (313)
T PRK06249 76 VLVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYHS 155 (313)
T ss_pred EEEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEecCC
Confidence 999999999999999999888888999999999985 56777777555554321 1222 1123333332212
Q ss_pred CCC-----HHHHHHHHHHhhhcCCeEEcCcc-------------chhhHHHhhcchHH
Q 024016 145 TAT-----EEDGELIGKLFGSVGKIWRADEK-------------LFDAITGLSGSGPA 184 (274)
Q Consensus 145 ~~~-----~~~~~~v~~ll~~~g~~~~~~e~-------------~~~~~~a~~~~~~~ 184 (274)
..+ .+..+.+..+|+..|..+...++ .++.++++.++...
T Consensus 156 ~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g 213 (313)
T PRK06249 156 GPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTD 213 (313)
T ss_pred CCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChH
Confidence 112 35566788888888865444443 35677888776443
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-14 Score=122.50 Aligned_cols=207 Identities=17% Similarity=0.173 Sum_probs=141.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v 87 (274)
.+.++|||||+|+||.++|++|...|+ +|++| +|.....+.....|.... +..++++.||+|++++|+...+.+
T Consensus 14 LkgKtVGIIG~GsIG~amA~nL~d~G~----~ViV~-~r~~~s~~~A~~~G~~v~-sl~Eaak~ADVV~llLPd~~t~~V 87 (335)
T PRK13403 14 LQGKTVAVIGYGSQGHAQAQNLRDSGV----EVVVG-VRPGKSFEVAKADGFEVM-SVSEAVRTAQVVQMLLPDEQQAHV 87 (335)
T ss_pred hCcCEEEEEeEcHHHHHHHHHHHHCcC----EEEEE-ECcchhhHHHHHcCCEEC-CHHHHHhcCCEEEEeCCChHHHHH
Confidence 356899999999999999999999999 99999 776555455555687764 789999999999999997666788
Q ss_pred HH-HhccccCCCCEEEEecCCCCHHHHHHhhC--CCceEEEcCCcHHh-------hcCCceEEe-cCCCCCHHHHHHHHH
Q 024016 88 AM-QIRPLLSRKKLLVSVAAGVKLKDLQEWTG--HSRFIRVMPNTPSA-------VGEAATVMS-LGGTATEEDGELIGK 156 (274)
Q Consensus 88 ~~-~i~~~l~~~~~vis~~~g~~~~~l~~~~~--~~~~~~~~p~~~~~-------~~~g~~~i~-~~~~~~~~~~~~v~~ 156 (274)
+. ++.+.+++|++++ .+.|..+..- ...| +..++-+-|..|.+ .+.|+..++ ...+.+-.+.+....
T Consensus 88 ~~~eil~~MK~GaiL~-f~hgfni~~~-~i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l~av~qd~sg~a~~~ala 165 (335)
T PRK13403 88 YKAEVEENLREGQMLL-FSHGFNIHFG-QINPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPALVAVHQDATGTALHVALA 165 (335)
T ss_pred HHHHHHhcCCCCCEEE-ECCCcceecC-ceeCCCCCeEEEECCCCCChHHHHHHHcCCCceeEEEEEECCCCcHHHHHHH
Confidence 74 6888899998666 5567665321 2333 46677777776643 256665443 233445567888888
Q ss_pred HhhhcCCe---EE-c---Cc---cchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 024016 157 LFGSVGKI---WR-A---DE---KLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSG 226 (274)
Q Consensus 157 ll~~~g~~---~~-~---~e---~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 226 (274)
+...+|.. +. . .| +.+..-..++|.. ..++.+-.|.++++|.+++.|+--...-++-...++.+.|
T Consensus 166 ~a~~iG~~ragv~~ttf~~EtetDlfgEq~vL~Gg~----~~li~~gfe~lveaGy~pe~Ayfe~~he~kli~dli~e~G 241 (335)
T PRK13403 166 YAKGVGCTRAGVIETTFQEETETDLFGEQAVLCGGV----TALVKAGFETLTEGGYRPEIAYFECLHELKLIVDLMYEGG 241 (335)
T ss_pred HHHHcCCCceeEEecchHHHHhhhhcccchhhHHHH----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 88998843 22 1 12 2333444555533 3445666677889999999887544444455555554433
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3e-15 Score=119.52 Aligned_cols=151 Identities=21% Similarity=0.334 Sum_probs=112.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHH-cCce-eccCchhhccCCCEEEEeeCcccHHH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFES-IGVK-VLSDNNAVVEYSDVVVFSVKPQVVKD 86 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-~~~~~l~~-~g~~-~~~~~~~~~~~aDiIil~v~~~~~~~ 86 (274)
+|+|+|+|.|+||++++++|.++|| +|.+- +|+. ++.+.+.+ .+.. ...++.++++.+|+||++||-..+.+
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~----eV~ig-s~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~ 75 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGH----EVIIG-SSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPD 75 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCC----eEEEe-cCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHh
Confidence 4799999999999999999999999 99888 5544 44444444 3332 23567888999999999999999999
Q ss_pred HHHHhccccCCCCEEEEecCCCC-----------------HHHHHHhhCCCceEEEcCCcHHhh-----c--CCceEEec
Q 024016 87 VAMQIRPLLSRKKLLVSVAAGVK-----------------LKDLQEWTGHSRFIRVMPNTPSAV-----G--EAATVMSL 142 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~~g~~-----------------~~~l~~~~~~~~~~~~~p~~~~~~-----~--~g~~~i~~ 142 (274)
++.++...+. |++||+.++++. .+.+++.+|+.++++.+.+.+... . ....++++
T Consensus 76 v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVkAFn~i~a~~l~~~~~~~~~~~v~va 154 (211)
T COG2085 76 VLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKAFNTIPAAVLADLAKPGGRRDVLVA 154 (211)
T ss_pred HHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchhhhhcccCHHHhccCCCcCCceeEEEe
Confidence 9999998774 899999888631 245677778777887665544322 1 12234455
Q ss_pred CCCCCHHHHHHHHHHhhhcCCe-EEcC
Q 024016 143 GGTATEEDGELIGKLFGSVGKI-WRAD 168 (274)
Q Consensus 143 ~~~~~~~~~~~v~~ll~~~g~~-~~~~ 168 (274)
++ |.++.+.+.++.+.+|.. +..+
T Consensus 155 gD--D~~Ak~~v~~L~~~iG~~~ld~G 179 (211)
T COG2085 155 GD--DAEAKAVVAELAEDIGFRPLDAG 179 (211)
T ss_pred cC--cHHHHHHHHHHHHhcCcceeecc
Confidence 53 688999999999999954 6655
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.1e-14 Score=121.37 Aligned_cols=154 Identities=15% Similarity=0.277 Sum_probs=107.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-------------ccCchhhccCCCEEEE
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-------------LSDNNAVVEYSDVVVF 77 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~-------------~~~~~~~~~~aDiIil 77 (274)
|||+|||+|.||..++..|.++|+ +|++| +| +++.+.+.+.|..+ .++..+..+.+|+||+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~----~V~~~-~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vil 74 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGR----DVTFL-VR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVIL 74 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCC----ceEEE-ec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEE
Confidence 589999999999999999999999 99999 99 77887777655432 2334455578999999
Q ss_pred eeCcccHHHHHHHhccccCCCCEEEEecCCCC-HHHHHHhhCCCceEEE---cCC---cHHhh---cCCceEEecCCCCC
Q 024016 78 SVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVK-LKDLQEWTGHSRFIRV---MPN---TPSAV---GEAATVMSLGGTAT 147 (274)
Q Consensus 78 ~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~-~~~l~~~~~~~~~~~~---~p~---~~~~~---~~g~~~i~~~~~~~ 147 (274)
|+|+.+++++++++.+.+.++++||++.+|+. .+.+.+.++..+++.. ++. .|..+ +.+...+...+...
T Consensus 75 avk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~ 154 (305)
T PRK12921 75 AVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYFGRERVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQR 154 (305)
T ss_pred EecccCHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhCCcccEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCc
Confidence 99999999999999988888889999999987 4667777764344332 111 12111 11222221112223
Q ss_pred HHHHHHHHHHhhhcCCeEEcCcc
Q 024016 148 EEDGELIGKLFGSVGKIWRADEK 170 (274)
Q Consensus 148 ~~~~~~v~~ll~~~g~~~~~~e~ 170 (274)
.+..+.+.++|...|..+...++
T Consensus 155 ~~~~~~l~~~l~~~g~~~~~~~d 177 (305)
T PRK12921 155 SERTRAVRDALAGARLEVVLSEN 177 (305)
T ss_pred CHHHHHHHHHHHhCCCCceecHH
Confidence 45666788888887855444443
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.5e-14 Score=124.89 Aligned_cols=155 Identities=18% Similarity=0.231 Sum_probs=113.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCC-------CCCCCcEEEEeCCCHH-----HHHHHHHc--------------Cceec
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSG-------VLPPDRICTAVHSNLK-----RRDAFESI--------------GVKVL 62 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g-------~~~~~~v~v~~~r~~~-----~~~~l~~~--------------g~~~~ 62 (274)
+.+||+|||+|+||+++|..|.++| + +|.+| .|+++ ..+.+.+. ++.+.
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~----~V~lw-~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~t 84 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHN----EVRMW-VLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAV 84 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCC----eEEEE-EecccccchHHHHHHHhcCCCcccCCCCcCCCceEEe
Confidence 3579999999999999999999987 6 89999 88875 24555431 23456
Q ss_pred cCchhhccCCCEEEEeeCcccHHHHHHHhcc--ccCCCCEEEEecCCCCHH---------HHHHhhCCCceE-EEcCCcH
Q 024016 63 SDNNAVVEYSDVVVFSVKPQVVKDVAMQIRP--LLSRKKLLVSVAAGVKLK---------DLQEWTGHSRFI-RVMPNTP 130 (274)
Q Consensus 63 ~~~~~~~~~aDiIil~v~~~~~~~v~~~i~~--~l~~~~~vis~~~g~~~~---------~l~~~~~~~~~~-~~~p~~~ 130 (274)
+|..++++++|+|+++||++.++++++++.+ .+++++++||+++|+..+ .+++.++ .++. -.-|+++
T Consensus 85 sdl~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~-~~~~~LsGPs~A 163 (365)
T PTZ00345 85 SDLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELG-IPCCALSGANVA 163 (365)
T ss_pred cCHHHHHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhC-CCeEEEECCCHH
Confidence 6777889999999999999999999999998 777777999999988643 2344444 2433 3458888
Q ss_pred HhhcCCc-eEEecCCCCCHHHHHHHHHHhhhcCCeEEcCcc
Q 024016 131 SAVGEAA-TVMSLGGTATEEDGELIGKLFGSVGKIWRADEK 170 (274)
Q Consensus 131 ~~~~~g~-~~i~~~~~~~~~~~~~v~~ll~~~g~~~~~~e~ 170 (274)
.++..|. +.++.+ +.+.+..+.++++|+.-...++.+++
T Consensus 164 ~Eva~~~pt~~via-s~~~~~a~~~~~lf~~~~frvy~s~D 203 (365)
T PTZ00345 164 NDVAREEFSEATIG-CEDKDDALIWQRLFDRPYFKINCVPD 203 (365)
T ss_pred HHHHcCCCcEEEEE-eCCHHHHHHHHHHhCCCcEEEEEcCC
Confidence 8887664 333322 23678888889998764434555544
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-15 Score=118.94 Aligned_cols=121 Identities=19% Similarity=0.335 Sum_probs=93.8
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc--------------CceeccCchhhccCCCEEEE
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--------------GVKVLSDNNAVVEYSDVVVF 77 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~--------------g~~~~~~~~~~~~~aDiIil 77 (274)
||+|||+|+||.++|..|.++|+ +|++| .|+++..+.+.+. .+.+++|.+++++++|+|++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~----~V~l~-~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~Iii 75 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGH----EVTLW-GRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIII 75 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTE----EEEEE-TSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHcCC----EEEEE-eccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEe
Confidence 79999999999999999999999 99999 9999988888761 23456778889999999999
Q ss_pred eeCcccHHHHHHHhccccCCCCEEEEecCCCC-------HHHHHHhhCCCceE-EEcCCcHHhhcCCc
Q 024016 78 SVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVK-------LKDLQEWTGHSRFI-RVMPNTPSAVGEAA 137 (274)
Q Consensus 78 ~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~-------~~~l~~~~~~~~~~-~~~p~~~~~~~~g~ 137 (274)
++|.+.++++++++.+++++++.+|++++|+. .+.+++.++..++. -.-|+.+.++..+.
T Consensus 76 avPs~~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~Ei~~~~ 143 (157)
T PF01210_consen 76 AVPSQAHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFAEEIAEGK 143 (157)
T ss_dssp -S-GGGHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--HHHHHTT-
T ss_pred cccHHHHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHHHHHHcCC
Confidence 99999999999999999999999999998873 24566667743333 23588887776663
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.3e-15 Score=118.90 Aligned_cols=149 Identities=17% Similarity=0.248 Sum_probs=108.8
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH------------------------cCceeccCchh
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES------------------------IGVKVLSDNNA 67 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~------------------------~g~~~~~~~~~ 67 (274)
||+|||+|.||..||..++.+|+ +|++| |++++..+...+ ..++..++..+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~----~V~l~-d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~ 75 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY----EVTLY-DRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEE 75 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS----EEEEE--SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGG
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC----cEEEE-ECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHH
Confidence 79999999999999999999999 99999 999987543321 12455677777
Q ss_pred hccCCCEEEEeeCcc--cHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEecCC
Q 024016 68 VVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGG 144 (274)
Q Consensus 68 ~~~~aDiIil~v~~~--~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~~~ 144 (274)
+. +||+||-|+|.+ .-++++.++....++++++.|.+++++++.+.+.++ ..+++..|+..|..... ..-+++++
T Consensus 76 ~~-~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~-lVEvv~~~ 153 (180)
T PF02737_consen 76 AV-DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMP-LVEVVPGP 153 (180)
T ss_dssp GC-TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT---EEEEEE-T
T ss_pred Hh-hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCc-eEEEeCCC
Confidence 66 999999999743 356788999999999999999999999999988776 35788888776665322 33356678
Q ss_pred CCCHHHHHHHHHHhhhcCCe-EEc
Q 024016 145 TATEEDGELIGKLFGSVGKI-WRA 167 (274)
Q Consensus 145 ~~~~~~~~~v~~ll~~~g~~-~~~ 167 (274)
..+++.++.+..+++.+|+. +.+
T Consensus 154 ~T~~~~~~~~~~~~~~~gk~pv~v 177 (180)
T PF02737_consen 154 KTSPETVDRVRALLRSLGKTPVVV 177 (180)
T ss_dssp TS-HHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEe
Confidence 88999999999999999975 544
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.4e-14 Score=122.45 Aligned_cols=153 Identities=15% Similarity=0.159 Sum_probs=111.0
Q ss_pred eEEEEcccHHHHHHHHHHHhCC--------CCCCCcEEEEeCC-----CHHHHHHHHH--------cC------ceeccC
Q 024016 12 ILGFIGAGKMAESIAKGVAKSG--------VLPPDRICTAVHS-----NLKRRDAFES--------IG------VKVLSD 64 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g--------~~~~~~v~v~~~r-----~~~~~~~l~~--------~g------~~~~~~ 64 (274)
||+|||+|+||+++|..|.++| + +|.+| .| +++-.+.+.+ .| +++.+|
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~----~V~lw-~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~d 75 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEE----SVRMW-VFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPD 75 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCc----eEEEE-EeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECC
Confidence 6999999999999999999999 7 99999 88 4444444432 12 345567
Q ss_pred chhhccCCCEEEEeeCcccHHHHHHHhccccCCCCEEEEecCCCCHH---------HHHHhhCCCceE-EEcCCcHHhhc
Q 024016 65 NNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLK---------DLQEWTGHSRFI-RVMPNTPSAVG 134 (274)
Q Consensus 65 ~~~~~~~aDiIil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~~---------~l~~~~~~~~~~-~~~p~~~~~~~ 134 (274)
..++++++|+||++||++.+++++.++.+++++++++|++++|+..+ .+++.++ .++. -.-|+.+.++.
T Consensus 76 l~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~-~~~~~lsGP~~A~Eva 154 (342)
T TIGR03376 76 LVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELG-IPCGVLSGANLANEVA 154 (342)
T ss_pred HHHHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhC-CCeEEeeCcchHHHHH
Confidence 78889999999999999999999999999998899999999998755 2344443 3443 34588888887
Q ss_pred CCc-eEEe-cCCCCC--HHHHHHHHHHhhhcCCeEEcCcc
Q 024016 135 EAA-TVMS-LGGTAT--EEDGELIGKLFGSVGKIWRADEK 170 (274)
Q Consensus 135 ~g~-~~i~-~~~~~~--~~~~~~v~~ll~~~g~~~~~~e~ 170 (274)
+|. +.++ ...+.+ .+..+.++++|+.=...++.+.+
T Consensus 155 ~~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~D 194 (342)
T TIGR03376 155 KEKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDD 194 (342)
T ss_pred cCCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCC
Confidence 765 2222 222111 67788888888754333444444
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.3e-13 Score=116.62 Aligned_cols=248 Identities=15% Similarity=0.201 Sum_probs=152.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceecc------------CchhhccCCCEEEEe
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLS------------DNNAVVEYSDVVVFS 78 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~------------~~~~~~~~aDiIil~ 78 (274)
|||.|+|+|.||+.++..|.++|+ +|+++ .|++. .+.+++.|+.+.. +..+....+|+||++
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~----~V~~~-~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~ 74 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGH----DVTLL-VRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVT 74 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCC----eEEEE-ecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEE
Confidence 699999999999999999999998 99999 88765 7888876654321 223445689999999
Q ss_pred eCcccHHHHHHHhccccCCCCEEEEecCCCCHH-HHHHhhCCCceEEE-cC--------CcHHhhcCCceEEecCCCCCH
Q 024016 79 VKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLK-DLQEWTGHSRFIRV-MP--------NTPSAVGEAATVMSLGGTATE 148 (274)
Q Consensus 79 v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~~-~l~~~~~~~~~~~~-~p--------~~~~~~~~g~~~i~~~~~~~~ 148 (274)
||..+..++++.+.+.+++++.|+.+.+|+... .+.+..+...++.. .+ ....+.+.|.+.+..-....+
T Consensus 75 vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~ 154 (307)
T COG1893 75 VKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRD 154 (307)
T ss_pred eccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCch
Confidence 999999999999999999999999999999864 46666664333322 11 111222334444433223344
Q ss_pred HHHHHHHHHhhhcCCeEEcCcc-------------chhhHHHhhcchHHH-------HHHHHHHHHH---HHHHcCCCHH
Q 024016 149 EDGELIGKLFGSVGKIWRADEK-------------LFDAITGLSGSGPAY-------IFLAIEALAD---GGVAAGLPRE 205 (274)
Q Consensus 149 ~~~~~v~~ll~~~g~~~~~~e~-------------~~~~~~a~~~~~~~~-------~~~~~~~l~e---~~~~~Gl~~~ 205 (274)
+..+.+.++|+..|...++.++ .++.++++..|-+.- ...+...+.| .+.+.|+..+
T Consensus 155 ~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~~g~~~~ 234 (307)
T COG1893 155 ELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARAEGVELP 234 (307)
T ss_pred HHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHhccCCCC
Confidence 7788888889888866554443 356667666654332 1112222222 2346774322
Q ss_pred -HHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHH-----HHHHHhCCHHHHHHHHHHHHHHHH
Q 024016 206 -LALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAG-----IHELEKSGFRGILMNAVVAAAKRS 270 (274)
Q Consensus 206 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~-----l~~l~~~~~~~~~~~a~~~~~~r~ 270 (274)
+..+.+......+. . ...+.++.| +...+-+-++. ++.-++.|+.....+.+.+..+..
T Consensus 235 ~~~~~~v~~~~~~~~--~---~~~sSM~qD-l~~gr~tEid~i~G~vv~~a~~~gi~~P~~~~L~~lvk~~ 299 (307)
T COG1893 235 EEVVERVLAVIRATD--A---ENYSSMLQD-LEKGRPTEIDAINGAVVRLAKKHGLATPVNDTLYALLKAK 299 (307)
T ss_pred HHHHHHHHHHHHhcc--c---ccCchHHHH-HHcCCcccHHHHhhHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 22333333332221 0 112334433 33333344443 445566677776667666655543
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.4e-14 Score=114.55 Aligned_cols=183 Identities=14% Similarity=0.197 Sum_probs=128.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHHHH
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAM 89 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~~ 89 (274)
|||+|||. |.||+.++..|.++|| .|+ +.+||+||+|+|.+.+.++++
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~----~v~---------------------------~~~~DlVilavPv~~~~~~i~ 49 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGL----GVY---------------------------IKKADHAFLSVPIDAALNYIE 49 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCC----EEE---------------------------ECCCCEEEEeCCHHHHHHHHH
Confidence 58999988 9999999999999998 764 258999999999999999998
Q ss_pred HhccccCCCCEEEEecCCCCHHHHHHhhCCCceEEEcCCc-HHhhcCC--ceEEecCCCCCHHHHHHHHHHhhhcCC-eE
Q 024016 90 QIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNT-PSAVGEA--ATVMSLGGTATEEDGELIGKLFGSVGK-IW 165 (274)
Q Consensus 90 ~i~~~l~~~~~vis~~~g~~~~~l~~~~~~~~~~~~~p~~-~~~~~~g--~~~i~~~~~~~~~~~~~v~~ll~~~g~-~~ 165 (274)
++. ++++++ ++++.. +.+. ..+++..||.. |.....+ ...+...+..+++..+.++++++ |. .+
T Consensus 50 ~~~------~~v~Dv-~SvK~~-i~~~--~~~~vg~HPMfGp~~a~~~lf~~~iv~~~~~~~~~~~~~~~l~~--G~~~~ 117 (197)
T PRK06444 50 SYD------NNFVEI-SSVKWP-FKKY--SGKIVSIHPLFGPMSYNDGVHRTVIFINDISRDNYLNEINEMFR--GYHFV 117 (197)
T ss_pred HhC------CeEEec-cccCHH-HHHh--cCCEEecCCCCCCCcCcccccceEEEECCCCCHHHHHHHHHHHc--CCEEE
Confidence 865 255654 555553 3332 24788888864 2222222 12222344556777889999998 64 48
Q ss_pred EcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHhcCCCCchHH
Q 024016 166 RADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKS-GKHPGQLKDDVASPGGTTI 244 (274)
Q Consensus 166 ~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~t~ 244 (274)
.+++++||..+|.+++.|+.++. ++.+ .. ..+..++|+...+++.+. +.+|+.|.+.+..+...
T Consensus 118 ~~t~eeHD~~~A~ishLpH~ia~---al~~----~~------~~~~t~~fr~l~ria~~~~~~~p~lw~dI~~~N~~a-- 182 (197)
T PRK06444 118 EMTADEHDLLMSEIMVKPYIISM---ILKD----IK------SDIKTGSFDKLLEVSEIKEKENWEVFNDTIIYNPYT-- 182 (197)
T ss_pred EeCHHHHHHHHHHHHHHHHHHHH---HHcc----CC------CCCCCccHHHHHHHHHHhccCCHHHHHHHHHHCchH--
Confidence 89999999999999988876543 3322 11 245566777777776433 46899999998777554
Q ss_pred HHHHHHH
Q 024016 245 AGIHELE 251 (274)
Q Consensus 245 ~~l~~l~ 251 (274)
..++++.
T Consensus 183 ~~~~~~~ 189 (197)
T PRK06444 183 NVINDLI 189 (197)
T ss_pred HHHHHHH
Confidence 4444443
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.5e-14 Score=125.17 Aligned_cols=190 Identities=15% Similarity=0.168 Sum_probs=118.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce----------------eccCchhhccCCC
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK----------------VLSDNNAVVEYSD 73 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~----------------~~~~~~~~~~~aD 73 (274)
.|||||||+|.||..||.+|.+ || +|++| |+++++.+.+.+ |.. ..++..+.+++||
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~-~~----~V~g~-D~~~~~ve~l~~-G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~ad 78 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK-SR----QVVGF-DVNKKRILELKN-GVDVNLETTEEELREARYLKFTSEIEKIKECN 78 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc-CC----EEEEE-eCCHHHHHHHHC-cCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCC
Confidence 4799999999999999999876 68 99999 999999999883 321 3345556789999
Q ss_pred EEEEeeCcc-------c---HHHHHHHhccccCCCCEEEEecCCCCH---H-HHHHhhC---C-----CceEEEcCCc--
Q 024016 74 VVVFSVKPQ-------V---VKDVAMQIRPLLSRKKLLVSVAAGVKL---K-DLQEWTG---H-----SRFIRVMPNT-- 129 (274)
Q Consensus 74 iIil~v~~~-------~---~~~v~~~i~~~l~~~~~vis~~~g~~~---~-~l~~~~~---~-----~~~~~~~p~~-- 129 (274)
++|+|||.. + +....++|.+++++|++||..+ ++++ + .++..+. + ...+.+.|..
T Consensus 79 vvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~S-Tv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~ 157 (425)
T PRK15182 79 FYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYES-TVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERIN 157 (425)
T ss_pred EEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEec-CCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCC
Confidence 999999732 3 3444467888889999888543 3332 2 2222221 1 1223333321
Q ss_pred H---HhhcCCceEEecCCCCCHHHHHHHHHHhhhcC--CeEEcCccchhhHHHhhcchHHHHHHHHHHHHH---HHHHcC
Q 024016 130 P---SAVGEAATVMSLGGTATEEDGELIGKLFGSVG--KIWRADEKLFDAITGLSGSGPAYIFLAIEALAD---GGVAAG 201 (274)
Q Consensus 130 ~---~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g--~~~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e---~~~~~G 201 (274)
+ .....-..-++.|. +++..+.++++++.+. ..++++...-..++.++. +.|.+..+..+.| .+.+.|
T Consensus 158 ~G~a~~~~~~~~riv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~--N~~~av~Ia~~NE~a~lae~~G 233 (425)
T PRK15182 158 PGDKKHRLTNIKKITSGS--TAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIE--NTQRDLNIALVNELAIIFNRLN 233 (425)
T ss_pred CCcccccccCCCeEEECC--CHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhC
Confidence 1 11111122344443 5777888999998875 245555433334444432 4454444444333 467999
Q ss_pred CCHHHHHHHH
Q 024016 202 LPRELALGLA 211 (274)
Q Consensus 202 l~~~~~~~~~ 211 (274)
+|.++..+.+
T Consensus 234 iD~~~v~~a~ 243 (425)
T PRK15182 234 IDTEAVLRAA 243 (425)
T ss_pred cCHHHHHHHh
Confidence 9999887763
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.2e-13 Score=121.39 Aligned_cols=186 Identities=13% Similarity=0.124 Sum_probs=116.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----------------cCcee--ccCchhhccCC
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----------------IGVKV--LSDNNAVVEYS 72 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~----------------~g~~~--~~~~~~~~~~a 72 (274)
|||+|||+|.||..+|..+. .|| +|++| |+++++.+.+.+ .+.+. ..+..+++++|
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G~----~Vigv-D~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~a 74 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QNH----EVVAL-DILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDA 74 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCC----cEEEE-ECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCC
Confidence 58999999999999996665 599 99999 999999988765 22233 23356778899
Q ss_pred CEEEEeeCcc-----------cHHHHHHHhccccCCCCEEEEecCCCC---HHHHHHhhCCCceEEEcCCcHHhhcCCce
Q 024016 73 DVVVFSVKPQ-----------VVKDVAMQIRPLLSRKKLLVSVAAGVK---LKDLQEWTGHSRFIRVMPNTPSAVGEAAT 138 (274)
Q Consensus 73 DiIil~v~~~-----------~~~~v~~~i~~~l~~~~~vis~~~g~~---~~~l~~~~~~~~~~~~~p~~~~~~~~g~~ 138 (274)
|+||+|||.. .++++++++.. ++++++||.. ++++ .+.+.+.+... .+.+. |.....|..
T Consensus 75 d~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~-STv~pgtt~~l~~~~~~~-~v~~~---PE~l~~G~a 148 (388)
T PRK15057 75 DYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIK-STVPVGFTAAMHKKYRTE-NIIFS---PEFLREGKA 148 (388)
T ss_pred CEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEe-eecCCchHHHHHHHhhcC-cEEEC---cccccCCcc
Confidence 9999999833 56778888876 6888888843 3333 44555444322 22332 333333432
Q ss_pred --------EEecCCCCCHHHHHHHHHHhhh--cCCe--EEcCccchhhHHHhhcchHHHHHHHHHH---HHHHHHHcCCC
Q 024016 139 --------VMSLGGTATEEDGELIGKLFGS--VGKI--WRADEKLFDAITGLSGSGPAYIFLAIEA---LADGGVAAGLP 203 (274)
Q Consensus 139 --------~i~~~~~~~~~~~~~v~~ll~~--~g~~--~~~~e~~~~~~~a~~~~~~~~~~~~~~~---l~e~~~~~Gl~ 203 (274)
-++.|. +++..+.+.+++.. ++.. ++++...-..++.+.. +.|.+..+.. ++..+.+.|+|
T Consensus 149 ~~d~~~p~rvv~G~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~--N~~~a~~Ia~~NE~a~lae~~GiD 224 (388)
T PRK15057 149 LYDNLHPSRIVIGE--RSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFA--NTYLAMRVAYFNELDSYAESLGLN 224 (388)
T ss_pred cccccCCCEEEEEc--CcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhCcC
Confidence 333332 35667778888754 5543 2445433334444432 4454443333 33446789999
Q ss_pred HHHHHHHHH
Q 024016 204 RELALGLAS 212 (274)
Q Consensus 204 ~~~~~~~~~ 212 (274)
.++..+.+.
T Consensus 225 ~~eV~~a~~ 233 (388)
T PRK15057 225 TRQIIEGVC 233 (388)
T ss_pred HHHHHHHhc
Confidence 988776653
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.1e-13 Score=115.38 Aligned_cols=243 Identities=13% Similarity=0.108 Sum_probs=144.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceecc-----------CchhhccCCCEEEE
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLS-----------DNNAVVEYSDVVVF 77 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~-----------~~~~~~~~aDiIil 77 (274)
.|||+|||+|.||+.++..|.++|+ +|+++ .|++++.+.+.+ .|+.+.. ...+....+|+||+
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~----~V~lv-~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv 76 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL----PVRLI-LRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLL 76 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC----CeEEE-EechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEE
Confidence 4799999999999999999999998 99999 998888887765 3443311 11122357899999
Q ss_pred eeCcccHHHHHHHhccccCCCCEEEEecCCCCH-HHHHHhhCCCceEEEcCC------cHHhhc-CCceEEecCCCCCHH
Q 024016 78 SVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL-KDLQEWTGHSRFIRVMPN------TPSAVG-EAATVMSLGGTATEE 149 (274)
Q Consensus 78 ~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~-~~l~~~~~~~~~~~~~p~------~~~~~~-~g~~~i~~~~~~~~~ 149 (274)
|||..+..++++.+.+.+.+++.|+++.+|+.. +.+++.++..+++..... .|..+. .+...+..|.. +.+
T Consensus 77 ~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g~~~~G~~-~~~ 155 (305)
T PRK05708 77 ACKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHGFTWLGDP-RNP 155 (305)
T ss_pred ECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceEEEEEcCC-CCc
Confidence 999999999999999999999999999999986 567777774444432211 122111 11111222322 234
Q ss_pred HHHHHHHHhhhcCCeEEcCcc-------------chhhHHHhhcchHH-------HHHHHHHHHHHHHHHcCCCH--HHH
Q 024016 150 DGELIGKLFGSVGKIWRADEK-------------LFDAITGLSGSGPA-------YIFLAIEALADGGVAAGLPR--ELA 207 (274)
Q Consensus 150 ~~~~v~~ll~~~g~~~~~~e~-------------~~~~~~a~~~~~~~-------~~~~~~~~l~e~~~~~Gl~~--~~~ 207 (274)
..+.+.++|...|.....+++ .++.++++.++.+. .+..++.-+.+.+.+.|++. +..
T Consensus 156 ~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~G~~~~~~~~ 235 (305)
T PRK05708 156 TAPAWLDDLREAGIPHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRCGQPAAAANL 235 (305)
T ss_pred chHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHcCCCccHHHH
Confidence 456777888877755444432 24666777654332 22222323333456778653 333
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHH-----HHHHHHHhCCHHHHHHHHHHH
Q 024016 208 LGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTI-----AGIHELEKSGFRGILMNAVVA 265 (274)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~-----~~l~~l~~~~~~~~~~~a~~~ 265 (274)
.+.+......+ ....+.++.|.. ..+-+-. ..++.-++.|+.....+.+..
T Consensus 236 ~~~~~~~~~~~------~~~~sSM~qD~~-~gR~tEid~i~G~vvr~a~~~Gv~~P~~~~l~~ 291 (305)
T PRK05708 236 HEEVQRVIQAT------AANYSSMYQDVR-AGRRTEISYLLGYACRAADRHGLPLPRLQHLQQ 291 (305)
T ss_pred HHHHHHHHHhc------cCCCcHHHHHHH-cCCceeehhhhhHHHHHHHHcCCCCchHHHHHH
Confidence 33333222111 122344554443 2222222 234455666666555555443
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-12 Score=112.07 Aligned_cols=149 Identities=21% Similarity=0.251 Sum_probs=116.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----------cC-------------ceeccC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------IG-------------VKVLSD 64 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-----------~g-------------~~~~~~ 64 (274)
..+||+|||+|.||+.||..+...|| +|+++ |++++.++.... .| ++..++
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~G~----~V~l~-D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~ 76 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALAGY----DVVLK-DISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTD 76 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhhcCC----ceEEE-eCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCc
Confidence 46799999999999999999999889 99999 999766443321 12 111222
Q ss_pred chhhccCCCEEEEeeCcc--cHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEe
Q 024016 65 NNAVVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMS 141 (274)
Q Consensus 65 ~~~~~~~aDiIil~v~~~--~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~ 141 (274)
. ..+.+||+||-+++-+ .-++++.++....+|++++-|.++++++..+++.+. ..+++..|+..|..... ..-+.
T Consensus 77 ~-~~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~-LVEvI 154 (307)
T COG1250 77 L-AALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMP-LVEVI 154 (307)
T ss_pred h-hHhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcce-eEEEe
Confidence 2 2578999999999743 356888899888899999999999999999988775 35788888877765543 23345
Q ss_pred cCCCCCHHHHHHHHHHhhhcCCe
Q 024016 142 LGGTATEEDGELIGKLFGSVGKI 164 (274)
Q Consensus 142 ~~~~~~~~~~~~v~~ll~~~g~~ 164 (274)
.+..++++.++.+.++.+.+|+.
T Consensus 155 ~g~~T~~e~~~~~~~~~~~igK~ 177 (307)
T COG1250 155 RGEKTSDETVERVVEFAKKIGKT 177 (307)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCC
Confidence 67778899999999999999975
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-12 Score=124.09 Aligned_cols=154 Identities=18% Similarity=0.149 Sum_probs=122.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----------c-------------CceeccC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------I-------------GVKVLSD 64 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-----------~-------------g~~~~~~ 64 (274)
..+||+|||+|.||..||..+..+|+ +|+++ |++++..+...+ . .++..++
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~----~V~l~-d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 386 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGT----PIVMK-DINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLS 386 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCC
Confidence 44689999999999999999999999 99999 999987553221 1 1333444
Q ss_pred chhhccCCCEEEEeeCcc--cHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEe
Q 024016 65 NNAVVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMS 141 (274)
Q Consensus 65 ~~~~~~~aDiIil~v~~~--~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~ 141 (274)
. +.+++||+||-|++-+ .-++++.++....++++++.|.++++++..+++.+. ..+++..|+..|..... ..-++
T Consensus 387 ~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~-lvEvv 464 (714)
T TIGR02437 387 Y-AGFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMP-LVEVI 464 (714)
T ss_pred H-HHhcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCc-eEeec
Confidence 4 4578999999999743 456888999999999999999999999999988775 35789999877766543 23355
Q ss_pred cCCCCCHHHHHHHHHHhhhcCCe-EEcCc
Q 024016 142 LGGTATEEDGELIGKLFGSVGKI-WRADE 169 (274)
Q Consensus 142 ~~~~~~~~~~~~v~~ll~~~g~~-~~~~e 169 (274)
.++.+++++++.+..+++.+|+. +.+.+
T Consensus 465 ~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d 493 (714)
T TIGR02437 465 RGEKSSDETIATVVAYASKMGKTPIVVND 493 (714)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEeCC
Confidence 67888999999999999999986 66543
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.1e-12 Score=123.66 Aligned_cols=153 Identities=20% Similarity=0.147 Sum_probs=120.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH-----------Hc-------------CceeccC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE-----------SI-------------GVKVLSD 64 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~-----------~~-------------g~~~~~~ 64 (274)
...||+|||+|.||..||..+..+|+ +|+++ |++++..+... +. .++..++
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~----~V~l~-d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~ 386 (715)
T PRK11730 312 PVKQAAVLGAGIMGGGIAYQSASKGV----PVIMK-DINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLD 386 (715)
T ss_pred ccceEEEECCchhHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCC
Confidence 34689999999999999999999999 99999 99998754321 11 1334444
Q ss_pred chhhccCCCEEEEeeCcc--cHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEe
Q 024016 65 NNAVVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMS 141 (274)
Q Consensus 65 ~~~~~~~aDiIil~v~~~--~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~ 141 (274)
. +.+++||+||-|++-+ .-++++.++.+..++++++.|.++++++..+.+.+. ..+++..|...|..... ..-++
T Consensus 387 ~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~-lVEvv 464 (715)
T PRK11730 387 Y-AGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMP-LVEVI 464 (715)
T ss_pred H-HHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccc-eEEee
Confidence 4 5578999999999743 456888999999999999999999999999988776 35788888877765433 23355
Q ss_pred cCCCCCHHHHHHHHHHhhhcCCe-EEcC
Q 024016 142 LGGTATEEDGELIGKLFGSVGKI-WRAD 168 (274)
Q Consensus 142 ~~~~~~~~~~~~v~~ll~~~g~~-~~~~ 168 (274)
.++.++++.++.+..+++.+|+. +.+.
T Consensus 465 ~g~~T~~~~~~~~~~~~~~lgk~pv~v~ 492 (715)
T PRK11730 465 RGEKTSDETIATVVAYASKMGKTPIVVN 492 (715)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCceEEec
Confidence 67888999999999999999975 6554
|
|
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.2e-12 Score=104.56 Aligned_cols=222 Identities=19% Similarity=0.177 Sum_probs=152.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH-HHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-RDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v 87 (274)
+.+||+|||+|+-|.+-+.+|.++|. +|++- -|.... .++..+.|..+. +..|+++.+|+|++-+|+..-.++
T Consensus 17 kgK~iaIIGYGsQG~ahalNLRDSGl----nViiG-lr~g~~s~~kA~~dGf~V~-~v~ea~k~ADvim~L~PDe~q~~v 90 (338)
T COG0059 17 KGKKVAIIGYGSQGHAQALNLRDSGL----NVIIG-LRKGSSSWKKAKEDGFKVY-TVEEAAKRADVVMILLPDEQQKEV 90 (338)
T ss_pred cCCeEEEEecChHHHHHHhhhhhcCC----cEEEE-ecCCchhHHHHHhcCCEee-cHHHHhhcCCEEEEeCchhhHHHH
Confidence 56799999999999999999999999 88777 554443 677777898875 788999999999999999999999
Q ss_pred HH-HhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhh-------cCCceEEe-cCCCCCHHHHHHHHHH
Q 024016 88 AM-QIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAV-------GEAATVMS-LGGTATEEDGELIGKL 157 (274)
Q Consensus 88 ~~-~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~-------~~g~~~i~-~~~~~~~~~~~~v~~l 157 (274)
++ +|.|.+++|+.+. .+.|..+..-.-..| +..++-+-|..|.+. |.|+..++ ...+.+-.+.+....+
T Consensus 91 y~~~I~p~Lk~G~aL~-FaHGfNihf~~i~ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP~LiAV~qD~sG~a~~~Ala~ 169 (338)
T COG0059 91 YEKEIAPNLKEGAALG-FAHGFNIHFGLIVPPKDVDVIMVAPKGPGHLVRREYKEGFGVPALIAVHQDASGKALDIALAY 169 (338)
T ss_pred HHHHhhhhhcCCceEE-eccccceecceecCCccCcEEEEcCCCCcHHHHHHHHccCCceeEEEEEeCCCchHHHHHHHH
Confidence 97 7999999998544 567766543221122 456777777766542 56665543 2334456678888888
Q ss_pred hhhcCC--e-EEc----Cc---cchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcC-
Q 024016 158 FGSVGK--I-WRA----DE---KLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSG- 226 (274)
Q Consensus 158 l~~~g~--~-~~~----~e---~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~- 226 (274)
...+|. . +.- .| +.+..-+.+||.. ..++.+-.|.+++.|.+++.|+--+..-++-...++.+.|
T Consensus 170 AkgiGg~RaGvieTTFkeEtetDLfGEQ~vLcGgl----~~li~agfetLvEaGy~PE~AyfE~lhE~klIvdLiyegGi 245 (338)
T COG0059 170 AKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGL----QALIKAGFETLVEAGYQPELAYFECLHELKLIVDLIYEGGI 245 (338)
T ss_pred HHhcCCCccceEeeeeHHhhhcccccchhhhhhHH----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 898883 2 221 12 3445555666533 3344556677889999999988766555555555554433
Q ss_pred -------CChHHHHHhcCCCCc
Q 024016 227 -------KHPGQLKDDVASPGG 241 (274)
Q Consensus 227 -------~~~~~~~~~~~~~~g 241 (274)
.+...+.+-+..|.-
T Consensus 246 ~~M~~siSnTAeyG~~~~gpri 267 (338)
T COG0059 246 TNMRYSISNTAEYGDYTRGPRI 267 (338)
T ss_pred HHHHHhcCCHHHhcccccCcee
Confidence 234445555555543
|
|
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.6e-12 Score=111.61 Aligned_cols=208 Identities=17% Similarity=0.157 Sum_probs=145.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC------HHHHHHHHHcCceeccCchhhccCCCEEEEeeCcc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN------LKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ 82 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~------~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~ 82 (274)
+.++|+|||+|++|.+.|.+|...|+ +|++- -|. .+..+.+.+.|..+ .+..++++.||+|++.+|+.
T Consensus 35 kgKtIaIIGyGSqG~AqAlNLrdSGv----nVvvg-lr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~ADvVviLlPDt 108 (487)
T PRK05225 35 KGKKIVIVGCGAQGLNQGLNMRDSGL----DISYA-LRKEAIAEKRASWRKATENGFKV-GTYEELIPQADLVINLTPDK 108 (487)
T ss_pred CCCEEEEEccCHHHHHHhCCCccccc----eeEEe-ccccccccccchHHHHHhcCCcc-CCHHHHHHhCCEEEEcCChH
Confidence 45899999999999999999999998 88755 343 34455555678766 57889999999999999998
Q ss_pred cHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHh-------hcCCceEEe-cC--CCCCHHHH
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSA-------VGEAATVMS-LG--GTATEEDG 151 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~-------~~~g~~~i~-~~--~~~~~~~~ 151 (274)
.-..+..++.+.+++|..+. .+.|..+....-..| +..++-+-|..|.. -|.|+..++ .. .+.+....
T Consensus 109 ~q~~v~~~i~p~LK~Ga~L~-fsHGFni~~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~Gvp~l~AV~~~qD~~g~a~ 187 (487)
T PRK05225 109 QHSDVVRAVQPLMKQGAALG-YSHGFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPENDPKGEGM 187 (487)
T ss_pred HHHHHHHHHHhhCCCCCEEE-ecCCceeeeCceeCCCCCcEEEECCCCCCchHHHHHhcCCCceEEEEEeecCCCCchHH
Confidence 77778888999999998765 556666443222223 56677777766642 255665443 22 24556678
Q ss_pred HHHHHHhhhcCCe---EE-cC---c---cchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q 024016 152 ELIGKLFGSVGKI---WR-AD---E---KLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASM 221 (274)
Q Consensus 152 ~~v~~ll~~~g~~---~~-~~---e---~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~ 221 (274)
+....+...+|.. +. .+ | +.+..-+.++|.. ....++..+..++.|.+++.|+..+..++....++
T Consensus 188 ~~ala~a~~iG~~ragv~~ttf~~E~~sDL~GEq~vLcG~~----~~~~~~~Fe~lve~G~~pe~A~k~~~~~~E~I~e~ 263 (487)
T PRK05225 188 AIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGML----QAGSLLCFDKLVAEGTDPAYAEKLIQFGWETITEA 263 (487)
T ss_pred HHHHHHHHHhCCCccceeecchHHHHhhcchhhHHHHHhHH----HHHHHHHHHHHHHcCCCHHHHHHHHhhhHHHHHHH
Confidence 8888888888843 22 11 2 3444455555532 33455677778889999999998887777777777
Q ss_pred HHhcCC
Q 024016 222 VTKSGK 227 (274)
Q Consensus 222 ~~~~~~ 227 (274)
+.+.|.
T Consensus 264 i~e~GI 269 (487)
T PRK05225 264 LKQGGI 269 (487)
T ss_pred HHhccH
Confidence 655443
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=99.49 E-value=4e-12 Score=121.45 Aligned_cols=154 Identities=14% Similarity=0.108 Sum_probs=120.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHH-hCCCCCCCcEEEEeCCCHHHHHHHH-----------Hc-------------Cceecc
Q 024016 9 ESFILGFIGAGKMAESIAKGVA-KSGVLPPDRICTAVHSNLKRRDAFE-----------SI-------------GVKVLS 63 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~-~~g~~~~~~v~v~~~r~~~~~~~l~-----------~~-------------g~~~~~ 63 (274)
..+||+|||+|.||+.||..+. .+|+ +|+++ |++++..+... +. .++..+
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~----~V~l~-d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 377 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKAGI----PVRIK-DINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTT 377 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHcCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeC
Confidence 3468999999999999999887 5899 99999 99987654321 11 233444
Q ss_pred CchhhccCCCEEEEeeCcc--cHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEE
Q 024016 64 DNNAVVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVM 140 (274)
Q Consensus 64 ~~~~~~~~aDiIil~v~~~--~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i 140 (274)
+. +.+++||+||-|+|.+ .-.+++.++....++++++.|.++++++..+++.+. ..+++..|+..|..... ..-+
T Consensus 378 ~~-~~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~-lVEv 455 (699)
T TIGR02440 378 DY-RGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMP-LVEV 455 (699)
T ss_pred Ch-HHhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCc-eEEE
Confidence 54 5678999999999744 346888999998999999999999999999988775 35788888877765433 3335
Q ss_pred ecCCCCCHHHHHHHHHHhhhcCCe-EEcCc
Q 024016 141 SLGGTATEEDGELIGKLFGSVGKI-WRADE 169 (274)
Q Consensus 141 ~~~~~~~~~~~~~v~~ll~~~g~~-~~~~e 169 (274)
+.++.++++.++.+..+++.+|+. +.+.+
T Consensus 456 v~g~~T~~~~~~~~~~~~~~~gk~pv~v~d 485 (699)
T TIGR02440 456 IPHAGTSEQTIATTVALAKKQGKTPIVVAD 485 (699)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCeEEEEcc
Confidence 567888999999999999999986 66543
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-12 Score=110.89 Aligned_cols=164 Identities=16% Similarity=0.194 Sum_probs=125.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhcc-CCCEEEEeeCcccHHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVE-YSDVVVFSVKPQVVKD 86 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~-~aDiIil~v~~~~~~~ 86 (274)
...+|||||.|+||.-+|..|.++|| .+..+ +|+. .+.+++ .|..-.+.+.++++ ..|+|++||....++.
T Consensus 51 ~tl~IaIIGfGnmGqflAetli~aGh----~li~h-sRsd--yssaa~~yg~~~ft~lhdlcerhpDvvLlctsilsiek 123 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQFLAETLIDAGH----GLICH-SRSD--YSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSILSIEK 123 (480)
T ss_pred cceEEEEEecCcHHHHHHHHHHhcCc----eeEec-Ccch--hHHHHHHhcccccccHHHHHhcCCCEEEEEehhhhHHH
Confidence 34689999999999999999999999 99999 8875 344444 77766666666654 7999999999999999
Q ss_pred HHHHhccc-cCCCCEEEEecCC--CCHHHHHHhhC-CCceEEEcCCc-HHhh---cCCceEEec----CC-CCCHHHHHH
Q 024016 87 VAMQIRPL-LSRKKLLVSVAAG--VKLKDLQEWTG-HSRFIRVMPNT-PSAV---GEAATVMSL----GG-TATEEDGEL 153 (274)
Q Consensus 87 v~~~i~~~-l~~~~~vis~~~g--~~~~~l~~~~~-~~~~~~~~p~~-~~~~---~~g~~~i~~----~~-~~~~~~~~~ 153 (274)
++..+-+. ++.|+++++..+- ...+.+.+++| +..++.+||.+ |..+ .+|...++. +. ..-++.++.
T Consensus 124 ilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~ercE~ 203 (480)
T KOG2380|consen 124 ILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPERCEF 203 (480)
T ss_pred HHHhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHHHHH
Confidence 99887765 7889888866443 33456788888 68899999874 4323 345554442 21 123788999
Q ss_pred HHHHhhhcCCe-EEcCccchhhHHHhh
Q 024016 154 IGKLFGSVGKI-WRADEKLFDAITGLS 179 (274)
Q Consensus 154 v~~ll~~~g~~-~~~~e~~~~~~~a~~ 179 (274)
+.++|.+.|.. ++++-++||.++|-+
T Consensus 204 fleIf~cegckmVemS~eeHDkiaAds 230 (480)
T KOG2380|consen 204 FLEIFACEGCKMVEMSYEEHDKIAADS 230 (480)
T ss_pred HHHHHHhcCCeEEEEEeecccccccch
Confidence 99999999965 899999999988754
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.6e-12 Score=110.63 Aligned_cols=194 Identities=15% Similarity=0.199 Sum_probs=126.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc-----CceeccCchhh---ccCCCEEEEeeC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-----GVKVLSDNNAV---VEYSDVVVFSVK 80 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~-----g~~~~~~~~~~---~~~aDiIil~v~ 80 (274)
.+..||+||+|.||+.++.++.++|| .|.+| ||++++.+++.+. .+..+.+.+|. ++...-|+++|+
T Consensus 2 ~~~~iGviGLaVMG~NLaLNi~~~G~----~Vavy-NRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVk 76 (473)
T COG0362 2 MKADIGVIGLAVMGSNLALNIADHGY----TVAVY-NRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVK 76 (473)
T ss_pred CccceeeEehhhhhHHHHHHHHhcCc----eEEEE-eCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEe
Confidence 45689999999999999999999999 99999 9999999998872 23344555554 567899999998
Q ss_pred cc-cHHHHHHHhccccCCCCEEEEecCCCCHHHHHHh--h-C-CCceEEEc-CCcHHhhcCCceEEecCCCCCHHHHHHH
Q 024016 81 PQ-VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEW--T-G-HSRFIRVM-PNTPSAVGEAATVMSLGGTATEEDGELI 154 (274)
Q Consensus 81 ~~-~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~--~-~-~~~~~~~~-p~~~~~~~~g~~~i~~~~~~~~~~~~~v 154 (274)
.. .+..++++|.|++.+|.++|+--++.=.+++++. + + +..++..- ...-.-...|++++..| ++++.+.+
T Consensus 77 AG~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPSiMpGG---~~eay~~v 153 (473)
T COG0362 77 AGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPSIMPGG---QKEAYELV 153 (473)
T ss_pred cCCcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCCcCCCC---CHHHHHHH
Confidence 74 4788999999999999999986555434444332 2 2 33444431 11111223456655433 79999999
Q ss_pred HHHhhhcC-----C-e-EEcCccchhhHHHhhcchHHHHHHHHHHHHHH---HH-HcCCCHHHHHHHHH
Q 024016 155 GKLFGSVG-----K-I-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GV-AAGLPRELALGLAS 212 (274)
Q Consensus 155 ~~ll~~~g-----~-~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~-~~Gl~~~~~~~~~~ 212 (274)
.++|+.+. . + .+++++.-..+..+...|--| .=++.+.|+ .+ -.|++.++..++..
T Consensus 154 ~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEY--gDMQlIaE~Y~ilk~~lgls~~ei~~vF~ 220 (473)
T COG0362 154 APILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEY--GDMQLIAEAYDILKDGLGLSAEEIAEVFE 220 (473)
T ss_pred HHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchH--HHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99998773 2 2 566765433333333323222 112233333 22 36777776555443
|
|
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.3e-13 Score=104.39 Aligned_cols=146 Identities=21% Similarity=0.280 Sum_probs=95.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH-HHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-RRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~-~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v 87 (274)
+.++|+|||.|..|.+.|.+|.++|+ +|++. .|..+ ..++..+.|..+. +..|+++++|+|++.+|+....++
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG~----~V~Vg-lr~~s~s~~~A~~~Gf~v~-~~~eAv~~aDvV~~L~PD~~q~~v 76 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSGV----NVIVG-LREGSASWEKAKADGFEVM-SVAEAVKKADVVMLLLPDEVQPEV 76 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC-----EEEEE-E-TTCHHHHHHHHTT-ECC-EHHHHHHC-SEEEE-S-HHHHHHH
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCC----CEEEE-ecCCCcCHHHHHHCCCeec-cHHHHHhhCCEEEEeCChHHHHHH
Confidence 45799999999999999999999999 99988 77665 6677777898875 678999999999999999999999
Q ss_pred H-HHhccccCCCCEEEEecCCCCHHHHHHhhC--CCceEEEcCCcHHhh-------cCCceEEe-cCCCCCHHHHHHHHH
Q 024016 88 A-MQIRPLLSRKKLLVSVAAGVKLKDLQEWTG--HSRFIRVMPNTPSAV-------GEAATVMS-LGGTATEEDGELIGK 156 (274)
Q Consensus 88 ~-~~i~~~l~~~~~vis~~~g~~~~~l~~~~~--~~~~~~~~p~~~~~~-------~~g~~~i~-~~~~~~~~~~~~v~~ 156 (274)
+ ++|.+.+++|++++ .+.|..+. .....| +..++-..|..|.+. +.|...++ ...+.+..+.+....
T Consensus 77 y~~~I~p~l~~G~~L~-fahGfni~-~~~i~pp~~vdV~mvAPKgpG~~vR~~y~~G~Gvp~l~AV~qD~sg~A~~~ala 154 (165)
T PF07991_consen 77 YEEEIAPNLKPGATLV-FAHGFNIH-YGLIKPPKDVDVIMVAPKGPGHLVRREYVEGRGVPALIAVHQDASGKAKELALA 154 (165)
T ss_dssp HHHHHHHHS-TT-EEE-ESSSHHHH-CTTS---TTSEEEEEEESSSCHHHHHHHHCCTS--EEEEEEE-SSS-HHHHHHH
T ss_pred HHHHHHhhCCCCCEEE-eCCcchhh-cCcccCCCCCeEEEEecCCCChHHHHHHHcCCCceEEEEEEECCCchHHHHHHH
Confidence 9 77999999998766 55665442 111122 455666667665432 45554433 222234455666666
Q ss_pred HhhhcC
Q 024016 157 LFGSVG 162 (274)
Q Consensus 157 ll~~~g 162 (274)
+...+|
T Consensus 155 ~A~~iG 160 (165)
T PF07991_consen 155 YAKAIG 160 (165)
T ss_dssp HHHHTT
T ss_pred HHHHhC
Confidence 666655
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.9e-12 Score=119.83 Aligned_cols=154 Identities=14% Similarity=0.138 Sum_probs=122.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----------c-------------CceeccC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------I-------------GVKVLSD 64 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-----------~-------------g~~~~~~ 64 (274)
...+|+|||+|.||..||..+..+|+ +|+++ |++++.++...+ . .++..++
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G~----~V~l~-d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~ 408 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKGL----KTVLK-DATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLD 408 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCCC----cEEEe-cCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCC
Confidence 45789999999999999999999999 99999 999987654221 1 1333444
Q ss_pred chhhccCCCEEEEeeCcc--cHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEe
Q 024016 65 NNAVVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMS 141 (274)
Q Consensus 65 ~~~~~~~aDiIil~v~~~--~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~ 141 (274)
. +.+++||+||-|++.+ .-++++.++.+..++++++.|.++++++..+++.+. ..+++..|+..|..... ..-++
T Consensus 409 ~-~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~-LvEvv 486 (737)
T TIGR02441 409 Y-SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQ-LLEII 486 (737)
T ss_pred H-HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCc-eEEEe
Confidence 4 4578999999999744 356888999999999999999999999999988775 35788888877766543 33455
Q ss_pred cCCCCCHHHHHHHHHHhhhcCCe-EEcCc
Q 024016 142 LGGTATEEDGELIGKLFGSVGKI-WRADE 169 (274)
Q Consensus 142 ~~~~~~~~~~~~v~~ll~~~g~~-~~~~e 169 (274)
.++.++++.++.+..+++.+|+. +.+.+
T Consensus 487 ~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d 515 (737)
T TIGR02441 487 THDGTSKDTLASAVAVGLKQGKVVIVVKD 515 (737)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCeEEEECC
Confidence 67888999999999999999986 65543
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.2e-12 Score=120.00 Aligned_cols=153 Identities=14% Similarity=0.101 Sum_probs=120.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHH-hCCCCCCCcEEEEeCCCHHHHHHHH-----------Hc-------------Cceecc
Q 024016 9 ESFILGFIGAGKMAESIAKGVA-KSGVLPPDRICTAVHSNLKRRDAFE-----------SI-------------GVKVLS 63 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~-~~g~~~~~~v~v~~~r~~~~~~~l~-----------~~-------------g~~~~~ 63 (274)
..+||+|||+|.||..||..+. .+|+ +|+++ |++++..+... +. .++.++
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~----~V~l~-d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 382 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGL----PVRIK-DINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTT 382 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeC
Confidence 3478999999999999999998 8899 99999 99987654321 11 133444
Q ss_pred CchhhccCCCEEEEeeCcc--cHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEE
Q 024016 64 DNNAVVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVM 140 (274)
Q Consensus 64 ~~~~~~~~aDiIil~v~~~--~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i 140 (274)
+. +.+++||+||-|++.+ .-++++.++....+|++++.|.++++++..+++.+. ..+++..|+..|..... ..-+
T Consensus 383 ~~-~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~-lVEv 460 (708)
T PRK11154 383 DY-RGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMP-LVEV 460 (708)
T ss_pred Ch-HHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCc-eEEE
Confidence 44 5678999999999743 456888999999999999999999999999988775 35788888877765433 3345
Q ss_pred ecCCCCCHHHHHHHHHHhhhcCCe-EEcC
Q 024016 141 SLGGTATEEDGELIGKLFGSVGKI-WRAD 168 (274)
Q Consensus 141 ~~~~~~~~~~~~~v~~ll~~~g~~-~~~~ 168 (274)
++++.++++..+.+..+++.+|+. +.+.
T Consensus 461 v~g~~Ts~~~~~~~~~~~~~~gk~pv~v~ 489 (708)
T PRK11154 461 IPHAKTSAETIATTVALAKKQGKTPIVVR 489 (708)
T ss_pred ECCCCCCHHHHHHHHHHHHHcCCceEEEe
Confidence 668888999999999999999975 5554
|
|
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.8e-12 Score=123.61 Aligned_cols=190 Identities=13% Similarity=0.141 Sum_probs=139.6
Q ss_pred EEEeeCcccHHHHHHHhccccCCCCEEEEecCCCCHH---HHHHhhCC--CceEEEcCCcHH-----------hhcCCce
Q 024016 75 VVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLK---DLQEWTGH--SRFIRVMPNTPS-----------AVGEAAT 138 (274)
Q Consensus 75 Iil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~~---~l~~~~~~--~~~~~~~p~~~~-----------~~~~g~~ 138 (274)
||+|+|+..+.+++.++.++++++++|.++ ++++.. .+.+.++. .+++..||..-. .+.....
T Consensus 1 vila~Pv~~~~~~~~~~~~~~~~~~~vtDv-~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~~ 79 (673)
T PRK11861 1 VLLAAPVAQTGPLLARIAPFLDASTIVTDA-GSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRNV 79 (673)
T ss_pred CEEEcCHHHHHHHHHHHhhhCCCCcEEEec-CcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCeE
Confidence 689999999999999999999888766655 556644 33444542 357888885311 1223345
Q ss_pred EEecCCCCCHHHHHHHHHHhhhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 024016 139 VMSLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLG 217 (274)
Q Consensus 139 ~i~~~~~~~~~~~~~v~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~ 217 (274)
++++.+..+++.+++++++++.+|.. +.+++++||.++++++|.|++++.. ++....+.- +.+....+..++|++
T Consensus 80 il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlpH~~a~~---l~~~~~~~~-~~~~~~~~a~~gfrd 155 (673)
T PRK11861 80 VLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVFAAVSHLPHVLSFA---LVEQILGES-DAELKFSYAAGGFRD 155 (673)
T ss_pred EEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHHHHHHHH---HHHHHhhcc-ChhHHHHhcccchhc
Confidence 67777777888999999999999965 8899999999999999999987653 333332221 345556899999999
Q ss_pred HHHHHHhcCCChHHHHHhcCCCCchHHHHHHHHHhC--CHHHHHHH----HHHHHHHHHhh
Q 024016 218 AASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKS--GFRGILMN----AVVAAAKRSRE 272 (274)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~g~t~~~l~~l~~~--~~~~~~~~----a~~~~~~r~~~ 272 (274)
++|++. .+|.+|.+.+.++.....+.|+.+.+. .++..+.+ .+.+.++++++
T Consensus 156 ~tRia~---~~p~lw~di~~~N~~~i~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~~ 213 (673)
T PRK11861 156 FTRIAA---SSPEMWRDVCLANRAALLDELDAYTAVLARLRAAIDAGDGAALEAVFARSRA 213 (673)
T ss_pred cccccc---CCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999874 689999999999988887777777664 45555543 56666666654
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.5e-12 Score=99.31 Aligned_cols=108 Identities=21% Similarity=0.333 Sum_probs=87.6
Q ss_pred EEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCc--------------hhhccCCCEEEEe
Q 024016 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDN--------------NAVVEYSDVVVFS 78 (274)
Q Consensus 13 IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~--------------~~~~~~aDiIil~ 78 (274)
|.|+|+|.||..+|..|.+.|+ +|+++ .|++ +.+.+.+.|+++.... .+....+|+||+|
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~----~V~l~-~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~ 74 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH----DVTLV-SRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVA 74 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC----EEEEE-ESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-
T ss_pred CEEECcCHHHHHHHHHHHHCCC----ceEEE-Eccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEE
Confidence 7899999999999999999999 99999 8988 7888877665442211 1346789999999
Q ss_pred eCcccHHHHHHHhccccCCCCEEEEecCCCCH-HHHHHhhCCCceEEEc
Q 024016 79 VKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL-KDLQEWTGHSRFIRVM 126 (274)
Q Consensus 79 v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~-~~l~~~~~~~~~~~~~ 126 (274)
||..+.+++++.+.+.+.+++.|+++.+|+.. +.+++.++..+++..+
T Consensus 75 vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~~~~~v~~g~ 123 (151)
T PF02558_consen 75 VKAYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYFPRPRVLGGV 123 (151)
T ss_dssp SSGGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHSTGSGEEEEE
T ss_pred ecccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHcCCCcEEEEE
Confidence 99999999999999999999899999999995 5677777644555443
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.9e-10 Score=104.91 Aligned_cols=195 Identities=16% Similarity=0.143 Sum_probs=117.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC--CCCCCcEEEEeCCCHHHHHHHHHc-----------------C--ceeccCchhh
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSG--VLPPDRICTAVHSNLKRRDAFESI-----------------G--VKVLSDNNAV 68 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g--~~~~~~v~v~~~r~~~~~~~l~~~-----------------g--~~~~~~~~~~ 68 (274)
+|||+|||+|.+|..+|..|.+.| + +|+.+ |.++++.+.+.+- + ...+++..++
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~----~V~gv-D~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~ 75 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDI----EVVVV-DISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKH 75 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCC----eEEEE-ECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHH
Confidence 479999999999999999999885 5 79999 9999998876531 1 3345556677
Q ss_pred ccCCCEEEEeeC-cc--------------cHHHHHHHhccccCCCCEEEE--ecCCCCHHHHHHhhC----CCc-eEEEc
Q 024016 69 VEYSDVVVFSVK-PQ--------------VVKDVAMQIRPLLSRKKLLVS--VAAGVKLKDLQEWTG----HSR-FIRVM 126 (274)
Q Consensus 69 ~~~aDiIil~v~-~~--------------~~~~v~~~i~~~l~~~~~vis--~~~g~~~~~l~~~~~----~~~-~~~~~ 126 (274)
+++||++|+||| |. .+.++++.|.++++++++||- +..+-+.+.+.+.+. +.. .+.+.
T Consensus 76 i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~ 155 (473)
T PLN02353 76 VAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSN 155 (473)
T ss_pred HhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEEC
Confidence 899999999995 22 467888889999999988772 222222344444332 111 12233
Q ss_pred CC-----cHHhhcCCc-eEEecCCC--CCHHHHHHHHHHhhhcC--CeEEcCccchhhHHHhhcchHHHH---HHHHHHH
Q 024016 127 PN-----TPSAVGEAA-TVMSLGGT--ATEEDGELIGKLFGSVG--KIWRADEKLFDAITGLSGSGPAYI---FLAIEAL 193 (274)
Q Consensus 127 p~-----~~~~~~~g~-~~i~~~~~--~~~~~~~~v~~ll~~~g--~~~~~~e~~~~~~~a~~~~~~~~~---~~~~~~l 193 (274)
|. ....--.-. -++..+.+ ..++..+.+.++++.+- ..+....-....++.+.. +.|. ..+++.+
T Consensus 156 PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~e--N~~ra~~Iaf~NEl 233 (473)
T PLN02353 156 PEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAA--NAFLAQRISSVNAM 233 (473)
T ss_pred CCccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 32 111111111 12333321 11446778888888763 233332222222333322 3332 3456667
Q ss_pred HHHHHHcCCCHHHHHHHH
Q 024016 194 ADGGVAAGLPRELALGLA 211 (274)
Q Consensus 194 ~e~~~~~Gl~~~~~~~~~ 211 (274)
+..+.+.|+|..+..+.+
T Consensus 234 a~lce~~giD~~eV~~~~ 251 (473)
T PLN02353 234 SALCEATGADVSQVSHAV 251 (473)
T ss_pred HHHHHHhCCCHHHHHHHh
Confidence 777888999987765544
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.5e-10 Score=99.26 Aligned_cols=181 Identities=14% Similarity=0.107 Sum_probs=122.6
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEeCCCHHH-------HHH-----------HHHcC-------------ceeccC--chh
Q 024016 21 MAESIAKGVAKSGVLPPDRICTAVHSNLKR-------RDA-----------FESIG-------------VKVLSD--NNA 67 (274)
Q Consensus 21 mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~-------~~~-----------l~~~g-------------~~~~~~--~~~ 67 (274)
||..||..+..+|+ +|.+| |++++. .+. +.+.| ++..++ ..+
T Consensus 1 MG~giA~~~a~~G~----~V~l~-d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 75 (314)
T PRK08269 1 MGQGIALAFAFAGH----DVTLI-DFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAAD 75 (314)
T ss_pred CcHHHHHHHHhCCC----eEEEE-eCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHH
Confidence 89999999999999 99999 999842 111 11111 233333 457
Q ss_pred hccCCCEEEEeeCcc-cH-HHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEecCC
Q 024016 68 VVEYSDVVVFSVKPQ-VV-KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGG 144 (274)
Q Consensus 68 ~~~~aDiIil~v~~~-~~-~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~~~ 144 (274)
++++||+||.|++.+ .+ ..++.++....++++++.|.++++++..+++.+. ..+++..|...|..... ..-+..++
T Consensus 76 a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~-lvEVv~g~ 154 (314)
T PRK08269 76 ALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMP-LVEVSPSD 154 (314)
T ss_pred HhccCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecCCccccCc-eEEEeCCC
Confidence 789999999999743 34 4566788888899999999999999999988775 34788888766654432 23355677
Q ss_pred CCCHHHHHHHHHHhhhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 024016 145 TATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQT 214 (274)
Q Consensus 145 ~~~~~~~~~v~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~ 214 (274)
.++++.++.+.++++.+|+. +++++.. ..+. . -.+...+.+++. .+.+.++++++...++..+
T Consensus 155 ~t~~e~~~~~~~ll~~lGk~~v~v~d~~-Gfi~--n---ri~~~~l~EAl~-l~e~g~~~~e~iD~a~~~g 218 (314)
T PRK08269 155 ATDPAVVDRLAALLERIGKVPVVCGPSP-GYIV--P---RIQALAMNEAAR-MVEEGVASAEDIDKAIRTG 218 (314)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEecCCC-Ccch--H---HHHHHHHHHHHH-HHHhCCCCHHHHHHHHHhC
Confidence 88999999999999999975 6666432 1100 0 011122233322 2346668888877766533
|
|
| >COG5495 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.2e-10 Score=88.71 Aligned_cols=245 Identities=13% Similarity=0.068 Sum_probs=146.1
Q ss_pred CCCCCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEE-EEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEe
Q 024016 1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFS 78 (274)
Q Consensus 1 ~~~~~~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~ 78 (274)
|.+++.....+.++|||.|+.|.+...+-.+.++ ... +. .|++++++.|.+ .+... .+.+...+-.+++|.-
T Consensus 1 ~~s~~~~~~~v~~~~vgtgrl~ra~~~ra~h~~~----~cs~i~-srS~~~a~~LaE~~~a~p-~d~~~~ael~~~vfv~ 74 (289)
T COG5495 1 MVSDGLRPARVVVGIVGTGRLGRAALLRADHVVV----ACSAIS-SRSRDRAQNLAETYVAPP-LDVAKSAELLLLVFVD 74 (289)
T ss_pred CcCcCccceeeEEEEeecchHHHHHHHHhcchhe----eehhhh-hcCHHHHhhchhccCCCc-cchhhChhhhceEEec
Confidence 5566666667899999999999996555555554 333 34 889998888877 33322 2333344556888888
Q ss_pred eCcccHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCc-----HHhhcCCceEEecCCCCCHHHHH
Q 024016 79 VKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNT-----PSAVGEAATVMSLGGTATEEDGE 152 (274)
Q Consensus 79 v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~-----~~~~~~g~~~i~~~~~~~~~~~~ 152 (274)
+|+..+..+..... ..||++++++++.-+.+.+.+.-. ++.-..+||+. +.....-.-.+++....|+-...
T Consensus 75 vpd~~~s~vaa~~~--~rpg~iv~HcSga~~~~il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~g~a 152 (289)
T COG5495 75 VPDALYSGVAATSL--NRPGTIVAHCSGANGSGILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFGITEADDVGYA 152 (289)
T ss_pred chHHHHHHHHHhcc--cCCCeEEEEccCCCchhhhhhhhhcCCcceeecccccccCCHHHHHhCcccEEEeecccccccH
Confidence 88876666554433 469999999987666666655332 34445667753 22111111111222233555677
Q ss_pred HHHHHhhhcCCe-EEcCccc---hhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024016 153 LIGKLFGSVGKI-WRADEKL---FDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKH 228 (274)
Q Consensus 153 ~v~~ll~~~g~~-~~~~e~~---~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (274)
.++.+...+|.. +.+.|+. ++......+ +|+-..+.--.+..+..|+|..+..--+.+.++|+.....+.|..
T Consensus 153 i~q~la~emgg~~f~V~~~~r~lYHaaa~~as---nf~v~~l~~a~~i~~aag~Dq~e~iv~~~pL~~g~~~n~~qrg~a 229 (289)
T COG5495 153 IVQSLALEMGGEPFCVREEARILYHAAAVHAS---NFIVTVLADALEIYRAAGDDQPELIVEVGPLARGALENTLQRGQA 229 (289)
T ss_pred HHHHHHHHhCCCceeechhHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHhcCCCcceeeeehHHHHHHHHHHHHhhhh
Confidence 889999999964 6666653 455444433 233222222223345788886665444666778887777655421
Q ss_pred hHHHHHhcCCC-CchHHHHHHHHHhCCHHH
Q 024016 229 PGQLKDDVASP-GGTTIAGIHELEKSGFRG 257 (274)
Q Consensus 229 ~~~~~~~~~~~-~g~t~~~l~~l~~~~~~~ 257 (274)
..+...+... ++..+..+..|++-+-..
T Consensus 230 -~aLTgpVaRGD~~vve~hl~al~~ig~~~ 258 (289)
T COG5495 230 -CALTGPVARGDWQVVEEHLRALEKIGANL 258 (289)
T ss_pred -hcccCCcccCcHHHHHHHHHHHHHhhHHH
Confidence 1343444332 257788888888865443
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.4e-09 Score=92.29 Aligned_cols=244 Identities=18% Similarity=0.241 Sum_probs=142.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-------------------cC-ceeccCchhhcc
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------------------IG-VKVLSDNNAVVE 70 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-------------------~g-~~~~~~~~~~~~ 70 (274)
|||.|||+|-+|...+..|.+.|| +|+.. |.++++.+.+.+ .| ++.++|..++++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GH----eVv~v-Did~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~ 75 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGH----EVVCV-DIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVK 75 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCC----eEEEE-eCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHh
Confidence 799999999999999999999999 99999 999999877653 12 456677888899
Q ss_pred CCCEEEEeeC--cc--------cHHHHHHHhccccCCCCEEEEecCCCC---HHHHHHhhCC---CceEEEcCCcHHhhc
Q 024016 71 YSDVVVFSVK--PQ--------VVKDVAMQIRPLLSRKKLLVSVAAGVK---LKDLQEWTGH---SRFIRVMPNTPSAVG 134 (274)
Q Consensus 71 ~aDiIil~v~--~~--------~~~~v~~~i~~~l~~~~~vis~~~g~~---~~~l~~~~~~---~~~~~~~p~~~~~~~ 134 (274)
++|++|+||+ ++ .++.+.+++.++++..++||. -++++ .+.+++.+.. .+-.... ..|.-.+
T Consensus 76 ~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~-KSTVPvGt~~~v~~~i~~~~~~~~f~v~-~NPEFLR 153 (414)
T COG1004 76 DADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVI-KSTVPVGTTEEVRAKIREENSGKDFEVA-SNPEFLR 153 (414)
T ss_pred cCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEE-cCCCCCCchHHHHHHHHhhcccCCceEe-cChHHhc
Confidence 9999999994 32 367778888888876666662 23333 3455544321 1101111 2344444
Q ss_pred CCceE--------EecCCCCCHHHHHHHHHHhhhc---CCe-EEcCccchhhHHHhhcchHHHHHH---HHHHHHHHHHH
Q 024016 135 EAATV--------MSLGGTATEEDGELIGKLFGSV---GKI-WRADEKLFDAITGLSGSGPAYIFL---AIEALADGGVA 199 (274)
Q Consensus 135 ~g~~~--------i~~~~~~~~~~~~~v~~ll~~~---g~~-~~~~e~~~~~~~a~~~~~~~~~~~---~~~~l~e~~~~ 199 (274)
+|..+ ++.|.. ++.+.+.++++++.+ ... ++.+- .-..+..+. .++|+++ |++-+.+.+++
T Consensus 154 EG~Av~D~~~PdRIViG~~-~~~a~~~~~ely~~~~~~~~p~l~t~~-~~AE~IKya--aNafLAtKIsFiNEia~ice~ 229 (414)
T COG1004 154 EGSAVYDFLYPDRIVIGVR-SERAAAVLRELYAPFLRQDVPILFTDL-REAELIKYA--ANAFLATKISFINEIANICEK 229 (414)
T ss_pred CcchhhhccCCCeEEEccC-ChhHHHHHHHHHhhhhhcCCCEEEecc-hHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 55321 222322 334566777777654 333 33321 111222222 2556543 56667777889
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 024016 200 AGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSR 271 (274)
Q Consensus 200 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~l~~l~~~~~~~~~~~a~~~~~~r~~ 271 (274)
.|+|.++..+-+..--+=....+ +.|.. |-.- |-|. -|.+-+...++.+....+.+++.+..++-+
T Consensus 230 ~g~D~~~V~~gIGlD~RIG~~fl-~aG~G---yGGs-CfPK-D~~AL~~~a~~~~~~~~ll~avv~vN~~qk 295 (414)
T COG1004 230 VGADVKQVAEGIGLDPRIGNHFL-NAGFG---YGGS-CFPK-DTKALIANAEELGYDPNLLEAVVEVNERRK 295 (414)
T ss_pred hCCCHHHHHHHcCCCchhhHhhC-CCCCC---CCCc-CCcH-hHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 99987765544321111111111 11100 0000 1111 355667777777877778887777666543
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.6e-11 Score=94.66 Aligned_cols=94 Identities=21% Similarity=0.358 Sum_probs=67.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--------------------cCceeccCchhhcc
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------------------IGVKVLSDNNAVVE 70 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~--------------------~g~~~~~~~~~~~~ 70 (274)
|||+|||+|.+|..+|..|.++|| +|+.+ |.++++.+.+.+ .....+++..+++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~----~V~g~-D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~ 75 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGH----QVIGV-DIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIK 75 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTS----EEEEE--S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHH
T ss_pred CEEEEECCCcchHHHHHHHHhCCC----EEEEE-eCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhh
Confidence 799999999999999999999999 99999 999999887763 12345566777789
Q ss_pred CCCEEEEeeC-cc---------cHHHHHHHhccccCCCCEEEEecCCCCH
Q 024016 71 YSDVVVFSVK-PQ---------VVKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (274)
Q Consensus 71 ~aDiIil~v~-~~---------~~~~v~~~i~~~l~~~~~vis~~~g~~~ 110 (274)
++|++|+||| |. .+.++++.|.+.++++++|| .-+++++
T Consensus 76 ~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV-~~STvpp 124 (185)
T PF03721_consen 76 DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVV-IESTVPP 124 (185)
T ss_dssp H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEE-ESSSSST
T ss_pred ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEE-EccEEEE
Confidence 9999999996 21 26788888999999988877 3344443
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.7e-10 Score=99.66 Aligned_cols=104 Identities=17% Similarity=0.246 Sum_probs=79.9
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCccc-H
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-V 84 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~-~ 84 (274)
.....++|||||+|+||+++|+.|...|+ +|.+| +|+++..... .....+..+++++||+|++++|... .
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~----~V~~~-d~~~~~~~~~----~~~~~~l~ell~~aDiVil~lP~t~~t 212 (330)
T PRK12480 142 KPVKNMTVAIIGTGRIGAATAKIYAGFGA----TITAY-DAYPNKDLDF----LTYKDSVKEAIKDADIISLHVPANKES 212 (330)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-eCChhHhhhh----hhccCCHHHHHhcCCEEEEeCCCcHHH
Confidence 44566899999999999999999999998 99999 9987653322 2234577889999999999998543 4
Q ss_pred HHHH-HHhccccCCCCEEEEecCCCC--HHHHHHhhC
Q 024016 85 KDVA-MQIRPLLSRKKLLVSVAAGVK--LKDLQEWTG 118 (274)
Q Consensus 85 ~~v~-~~i~~~l~~~~~vis~~~g~~--~~~l~~~~~ 118 (274)
..++ .++.+.++++.++|+++-|.- .+.+.+.+.
T Consensus 213 ~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~ 249 (330)
T PRK12480 213 YHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVN 249 (330)
T ss_pred HHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHH
Confidence 4444 567778899999999886643 456666665
|
|
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.2e-10 Score=91.79 Aligned_cols=155 Identities=18% Similarity=0.218 Sum_probs=111.5
Q ss_pred CCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----------c----------------
Q 024016 5 PIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------I---------------- 57 (274)
Q Consensus 5 ~~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-----------~---------------- 57 (274)
.+...++.|+|||+|.||+.||+--..+|+ +|.++ +++++.+.+..+ .
T Consensus 6 ~~~~~~~~V~ivGaG~MGSGIAQv~a~sg~----~V~l~-d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~ 80 (298)
T KOG2304|consen 6 ANMAEIKNVAIVGAGQMGSGIAQVAATSGL----NVWLV-DANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDT 80 (298)
T ss_pred cccccccceEEEcccccchhHHHHHHhcCC----ceEEe-cCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHH
Confidence 344455789999999999999999999999 99999 999876544332 0
Q ss_pred --CceeccCchhhccCCCEEEEee--CcccHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHh
Q 024016 58 --GVKVLSDNNAVVEYSDVVVFSV--KPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSA 132 (274)
Q Consensus 58 --g~~~~~~~~~~~~~aDiIil~v--~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~ 132 (274)
-++.+++..+++.++|+||-++ .-+.-++++.++....++.+++.+.++++.+..+...+. ..++.+.|=..|..
T Consensus 81 l~ri~~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFfNPvP 160 (298)
T KOG2304|consen 81 LDRIKTSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFFNPVP 160 (298)
T ss_pred HHHHHHcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeeccCCch
Confidence 0123456677788899999887 234456777888777788888888888888888876664 24555555333333
Q ss_pred hcCCceEEecCCCCCHHHHHHHHHHhhhcCCeE
Q 024016 133 VGEAATVMSLGGTATEEDGELIGKLFGSVGKIW 165 (274)
Q Consensus 133 ~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~~ 165 (274)
+-+-+. +..++..+++.+..+..+-+.+|+..
T Consensus 161 vMKLvE-Vir~~~TS~eTf~~l~~f~k~~gKtt 192 (298)
T KOG2304|consen 161 VMKLVE-VIRTDDTSDETFNALVDFGKAVGKTT 192 (298)
T ss_pred hHHHhh-hhcCCCCCHHHHHHHHHHHHHhCCCc
Confidence 322222 33456678999999999999999863
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.1e-10 Score=99.94 Aligned_cols=107 Identities=15% Similarity=0.226 Sum_probs=83.2
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccHH
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVK 85 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~ 85 (274)
....++|||||+|+||+.++++|..-|. +|.+| +|++...+.....|++...+..++++.||+|++++| ....+
T Consensus 189 ~L~gktVGIvG~G~IG~~vA~~l~~fG~----~V~~~-dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~ 263 (385)
T PRK07574 189 DLEGMTVGIVGAGRIGLAVLRRLKPFDV----KLHYT-DRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETE 263 (385)
T ss_pred ecCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-CCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHH
Confidence 3456899999999999999999999998 99999 998643333334677666788999999999999998 45577
Q ss_pred HHHH-HhccccCCCCEEEEecCCCC--HHHHHHhhC
Q 024016 86 DVAM-QIRPLLSRKKLLVSVAAGVK--LKDLQEWTG 118 (274)
Q Consensus 86 ~v~~-~i~~~l~~~~~vis~~~g~~--~~~l~~~~~ 118 (274)
.++. +....+++|.++|++.-|-- .+.+.+.+.
T Consensus 264 ~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~ 299 (385)
T PRK07574 264 HLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALE 299 (385)
T ss_pred HHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHH
Confidence 7774 46677899999998875533 455655554
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-10 Score=90.79 Aligned_cols=93 Identities=17% Similarity=0.283 Sum_probs=69.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCC-CCCCCcEEEEeCCCHHHHHHHHH-cCc----eeccCchhhccCCCEEEEeeCc
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSG-VLPPDRICTAVHSNLKRRDAFES-IGV----KVLSDNNAVVEYSDVVVFSVKP 81 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g-~~~~~~v~v~~~r~~~~~~~l~~-~g~----~~~~~~~~~~~~aDiIil~v~~ 81 (274)
.+.++|+|||+|.||.++++.|.+.| + +|++| +|++++.+.+.+ .+. ....+..+.++++|+||.|+|+
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~----~v~v~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~ 91 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAA----KIVIV-NRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPV 91 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCC----EEEEE-cCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCC
Confidence 45679999999999999999999986 5 89999 999998887765 342 1334666778899999999988
Q ss_pred ccH--HHHHHHhccccCCCCEEEEecC
Q 024016 82 QVV--KDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 82 ~~~--~~v~~~i~~~l~~~~~vis~~~ 106 (274)
... .++... ...+++++++++++.
T Consensus 92 ~~~~~~~~~~~-~~~~~~~~~v~D~~~ 117 (155)
T cd01065 92 GMKPGDELPLP-PSLLKPGGVVYDVVY 117 (155)
T ss_pred CCCCCCCCCCC-HHHcCCCCEEEEcCc
Confidence 764 222111 123578888887743
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=6e-10 Score=98.83 Aligned_cols=107 Identities=16% Similarity=0.205 Sum_probs=83.9
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccHH
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVK 85 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~ 85 (274)
....++|||||+|+||..+++.|..-|. +|.+| +|++...+...+.|+....+..+++++||+|++++| ....+
T Consensus 196 ~L~gktVGIVG~G~IG~~vA~~L~afG~----~V~~~-d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~ 270 (386)
T PLN03139 196 DLEGKTVGTVGAGRIGRLLLQRLKPFNC----NLLYH-DRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTR 270 (386)
T ss_pred CCCCCEEEEEeecHHHHHHHHHHHHCCC----EEEEE-CCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHH
Confidence 4566899999999999999999999888 99999 988644444445677666688999999999999998 45677
Q ss_pred HHH-HHhccccCCCCEEEEecCCC--CHHHHHHhhC
Q 024016 86 DVA-MQIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (274)
Q Consensus 86 ~v~-~~i~~~l~~~~~vis~~~g~--~~~~l~~~~~ 118 (274)
.++ .+....+++|.++|++.-|- ..+.+.+.+.
T Consensus 271 ~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~ 306 (386)
T PLN03139 271 GMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACS 306 (386)
T ss_pred HHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHH
Confidence 777 35667789999999887543 3456666664
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.11 E-value=8e-10 Score=96.91 Aligned_cols=106 Identities=21% Similarity=0.244 Sum_probs=80.9
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCc-ccH
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVV 84 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~-~~~ 84 (274)
.....++|||||+|+||+.+|+.|...|. +|.+| +|++... .....+... .+..+++++||+|++++|. ...
T Consensus 146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~----~V~~~-d~~~~~~-~~~~~~~~~-~~l~ell~~aDiV~l~lP~t~~T 218 (333)
T PRK13243 146 YDVYGKTIGIIGFGRIGQAVARRAKGFGM----RILYY-SRTRKPE-AEKELGAEY-RPLEELLRESDFVSLHVPLTKET 218 (333)
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHHCCC----EEEEE-CCCCChh-hHHHcCCEe-cCHHHHHhhCCEEEEeCCCChHH
Confidence 34567899999999999999999999998 99999 9986543 222345554 4788899999999999984 446
Q ss_pred HHHH-HHhccccCCCCEEEEecCCC--CHHHHHHhhC
Q 024016 85 KDVA-MQIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (274)
Q Consensus 85 ~~v~-~~i~~~l~~~~~vis~~~g~--~~~~l~~~~~ 118 (274)
+.++ .+....++++.++|+++-|- ..+.+.+.+.
T Consensus 219 ~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~ 255 (333)
T PRK13243 219 YHMINEERLKLMKPTAILVNTARGKVVDTKALVKALK 255 (333)
T ss_pred hhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHH
Confidence 6666 45667789999999887553 3456666665
|
|
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.2e-08 Score=84.00 Aligned_cols=154 Identities=16% Similarity=0.251 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec--------------cCchhhccCCCEEEEeeCcccHH
Q 024016 20 KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL--------------SDNNAVVEYSDVVVFSVKPQVVK 85 (274)
Q Consensus 20 ~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~--------------~~~~~~~~~aDiIil~v~~~~~~ 85 (274)
.||+.++..|.++|+ +|+++ .|+ ++.+.+.+.|+.+. +++.+ ...+|+||+|||..+++
T Consensus 1 aiG~~~a~~L~~~G~----~V~l~-~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~~~~ 73 (293)
T TIGR00745 1 AVGSLYGAYLARAGH----DVTLL-ARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAYQTE 73 (293)
T ss_pred CchHHHHHHHHhCCC----cEEEE-ecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccchhHH
Confidence 379999999999999 99999 997 66777766554221 12233 56799999999999999
Q ss_pred HHHHHhccccCCCCEEEEecCCCCH-HHHHHhhCCCceEEEcCC------cHH---hhcCCceEEecCCCCCHHHHHHHH
Q 024016 86 DVAMQIRPLLSRKKLLVSVAAGVKL-KDLQEWTGHSRFIRVMPN------TPS---AVGEAATVMSLGGTATEEDGELIG 155 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~~g~~~-~~l~~~~~~~~~~~~~p~------~~~---~~~~g~~~i~~~~~~~~~~~~~v~ 155 (274)
++++.+.+.+.++++|+++.+|+.. +.+.+.++..+++..... .|. +.+.+...+...+. ..+..+.+.
T Consensus 74 ~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~-~~~~~~~l~ 152 (293)
T TIGR00745 74 EAAALLLPLIGKNTKVLFLQNGLGHEERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVG-ENEAVEALA 152 (293)
T ss_pred HHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCC-chHHHHHHH
Confidence 9999999999999999999999875 556766663334332211 111 11223222222111 224556777
Q ss_pred HHhhhcCCeEEcCcc-------------chhhHHHhhcc
Q 024016 156 KLFGSVGKIWRADEK-------------LFDAITGLSGS 181 (274)
Q Consensus 156 ~ll~~~g~~~~~~e~-------------~~~~~~a~~~~ 181 (274)
++|+..|......++ .++.++++.++
T Consensus 153 ~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~ 191 (293)
T TIGR00745 153 ELLNEAGIPAELHGDILAAIWKKLLVNAAINPLTALLDC 191 (293)
T ss_pred HHHHhCCCCCEecchHHHHHHHHHhheechhHHHHHHCC
Confidence 788777754333332 24566666664
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-09 Score=93.29 Aligned_cols=89 Identities=15% Similarity=0.268 Sum_probs=69.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC--CCCCCCcEE-EEeCCCHHHHHHHHH-cCc-eeccCchhhccCCCEEEEeeCcc
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKS--GVLPPDRIC-TAVHSNLKRRDAFES-IGV-KVLSDNNAVVEYSDVVVFSVKPQ 82 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~--g~~~~~~v~-v~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~~aDiIil~v~~~ 82 (274)
|+.+||||||+|+||..+++.|.+. ++ ++. +| +|++++.+.+.+ .|. ..+++.++++.++|+|++|+|++
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~----el~aV~-dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~ 78 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGL----TLSAVA-VRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPAS 78 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCe----EEEEEE-CCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcH
Confidence 4568999999999999999999863 55 665 67 999998887766 453 45678888888999999999998
Q ss_pred cHHHHHHHhccccCCCCEEEEe
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~ 104 (274)
...++..+.. ..|+.++..
T Consensus 79 ~h~e~~~~aL---~aGk~Vi~~ 97 (271)
T PRK13302 79 VLRAIVEPVL---AAGKKAIVL 97 (271)
T ss_pred HHHHHHHHHH---HcCCcEEEe
Confidence 8888776654 345545544
|
|
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-07 Score=77.45 Aligned_cols=156 Identities=21% Similarity=0.214 Sum_probs=110.3
Q ss_pred CCeEEEEcccHH--------------------HHHHHHHHHhCCCCCCCcEEEEeCCCHH-----HHHHHHHcCceeccC
Q 024016 10 SFILGFIGAGKM--------------------AESIAKGVAKSGVLPPDRICTAVHSNLK-----RRDAFESIGVKVLSD 64 (274)
Q Consensus 10 ~~~IgiIG~G~m--------------------G~~~a~~L~~~g~~~~~~v~v~~~r~~~-----~~~~l~~~g~~~~~~ 64 (274)
+|||.+.|+||- |+.||-.+.++|| +|.+. +.+.+ ..+.+...|+++.+|
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGH----DVVLa-ePn~d~~dd~~w~~vedAGV~vv~d 75 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGH----DVVLA-EPNRDIMDDEHWKRVEDAGVEVVSD 75 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCC----cEEee-cCCccccCHHHHHHHHhcCcEEecC
Confidence 478999999983 7889999999999 99999 77653 355566689999999
Q ss_pred chhhccCCCEEEEeeCcc-cHHHHHHHhccccCCCCEEEEecCCCCHH----HHHHhhC----CCceEEEcCCc-HHhhc
Q 024016 65 NNAVVEYSDVVVFSVKPQ-VVKDVAMQIRPLLSRKKLLVSVAAGVKLK----DLQEWTG----HSRFIRVMPNT-PSAVG 134 (274)
Q Consensus 65 ~~~~~~~aDiIil~v~~~-~~~~v~~~i~~~l~~~~~vis~~~g~~~~----~l~~~~~----~~~~~~~~p~~-~~~~~ 134 (274)
..++++++.+.++.+|-. ..-.+.++|.++++.|.++..++. +++- .++..+. +..+...||.. |..-.
T Consensus 76 D~eaa~~~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT-~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~ 154 (340)
T COG4007 76 DAEAAEHGEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCT-VSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQ 154 (340)
T ss_pred chhhhhcceEEEEecccchhhHHHHHHHHhhCcCCcEeccccc-CchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCC
Confidence 999999999999999976 777888999999999987775543 3322 2333332 23345555531 22223
Q ss_pred CCceEEec-C----CCCCHHHHHHHHHHhhhcCCe-EEcCccc
Q 024016 135 EAATVMSL-G----GTATEEDGELIGKLFGSVGKI-WRADEKL 171 (274)
Q Consensus 135 ~g~~~i~~-~----~~~~~~~~~~v~~ll~~~g~~-~~~~e~~ 171 (274)
++..++.. + +-.++++.+++.++.+..|+. ++++.+.
T Consensus 155 h~~yviagr~t~g~elATeEQi~r~velaes~Gk~~yv~padv 197 (340)
T COG4007 155 HGHYVIAGRSTEGKELATEEQIERCVELAESTGKEVYVLPADV 197 (340)
T ss_pred CceEEEeccCCCceeeccHHHHHHHHHHHHhcCCceEecCHHH
Confidence 34333331 0 113688999999999999986 6666543
|
|
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=6e-08 Score=82.85 Aligned_cols=194 Identities=17% Similarity=0.241 Sum_probs=120.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH---cCce--eccCchhh---ccCCCEEEEeeCc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES---IGVK--VLSDNNAV---VEYSDVVVFSVKP 81 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~---~g~~--~~~~~~~~---~~~aDiIil~v~~ 81 (274)
.+.||.||++.||..++.++.++|| .|.+| ||+.++.+++.. .|.. -..|+++. ++....|++.|+.
T Consensus 6 ~~digLiGLaVMGqnLiLN~~d~Gf----~v~~y-NRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkA 80 (487)
T KOG2653|consen 6 KADIGLIGLAVMGQNLILNIADKGF----TVCAY-NRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKA 80 (487)
T ss_pred ccchhhhhHhhhhhhhhhcccccCc----eEEEe-ccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeC
Confidence 3689999999999999999999999 99999 999999988876 3332 34566665 4568899999986
Q ss_pred cc-HHHHHHHhccccCCCCEEEEecCCCCHH---HHHHhhC-CCceEEE-cCCcHHhhcCCceEEecCCCCCHHHHHHHH
Q 024016 82 QV-VKDVAMQIRPLLSRKKLLVSVAAGVKLK---DLQEWTG-HSRFIRV-MPNTPSAVGEAATVMSLGGTATEEDGELIG 155 (274)
Q Consensus 82 ~~-~~~v~~~i~~~l~~~~~vis~~~g~~~~---~l~~~~~-~~~~~~~-~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~ 155 (274)
.. +...++++.+++.+|.+||+--+.--.+ +.++... +.-++.. +...-.-.+.|++.+. | .++++...++
T Consensus 81 G~pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPSlMp-G--g~~~Awp~ik 157 (487)
T KOG2653|consen 81 GAPVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPSLMP-G--GSKEAWPHIK 157 (487)
T ss_pred CCcHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCccCC-C--CChHHHHHHH
Confidence 54 7788899999999999999754432222 2222222 2223332 1111112234555443 3 3789999999
Q ss_pred HHhhhcC-------Ce-EEcCccchhhHHHhhcchHHH--HHHHHHHHHHHHHH-cCCCHHHHHHHHH
Q 024016 156 KLFGSVG-------KI-WRADEKLFDAITGLSGSGPAY--IFLAIEALADGGVA-AGLPRELALGLAS 212 (274)
Q Consensus 156 ~ll~~~g-------~~-~~~~e~~~~~~~a~~~~~~~~--~~~~~~~l~e~~~~-~Gl~~~~~~~~~~ 212 (274)
++|+.+. .+ .++++..-..+..+...|.-| +..+.|+. +..++ .|++-++..++..
T Consensus 158 ~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY-~vlk~~~gls~~eia~vF~ 224 (487)
T KOG2653|consen 158 DIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAY-DVLKSVLGLSNDEIAEVFD 224 (487)
T ss_pred HHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHH-HHHHHhcCCcHHHHHHHHH
Confidence 9998652 22 456664333333333322222 22223332 22334 6777776555443
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.1e-08 Score=85.37 Aligned_cols=191 Identities=19% Similarity=0.246 Sum_probs=115.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-------------------cC-ceeccCchhhcc
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------------------IG-VKVLSDNNAVVE 70 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-------------------~g-~~~~~~~~~~~~ 70 (274)
++|||||+|-+|.++|..+.++|+ +|..+ |.++.+.+.+.. .| .+.++++.+ ++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~----~ViG~-DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~-l~ 83 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGF----KVIGV-DINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEE-LK 83 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCC----ceEeE-eCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhh-cc
Confidence 799999999999999999999999 99999 999988776653 12 455556555 56
Q ss_pred CCCEEEEeeCcc----------cHHHHHHHhccccCCCCEEE--EecCCCCHHHHHHhh-C---C----CceE------E
Q 024016 71 YSDVVVFSVKPQ----------VVKDVAMQIRPLLSRKKLLV--SVAAGVKLKDLQEWT-G---H----SRFI------R 124 (274)
Q Consensus 71 ~aDiIil~v~~~----------~~~~v~~~i~~~l~~~~~vi--s~~~g~~~~~l~~~~-~---~----~~~~------~ 124 (274)
.||++|+|||.. .++...+.|.+.|++|.+|| |++-+=+.+.+...+ . + ..+. |
T Consensus 84 ~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysPER 163 (436)
T COG0677 84 ECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPER 163 (436)
T ss_pred cCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCccc
Confidence 999999999731 25566678999999999988 443322344433322 1 1 1121 3
Q ss_pred EcCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCC-eEEcCccchhhHHHhhcchHHHH---HHHHHHHHHHHHHc
Q 024016 125 VMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGK-IWRADEKLFDAITGLSGSGPAYI---FLAIEALADGGVAA 200 (274)
Q Consensus 125 ~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~-~~~~~e~~~~~~~a~~~~~~~~~---~~~~~~l~e~~~~~ 200 (274)
.+|+....--....-+..| .+++..+.+..+.+.+=. .+.++......+..+.- +.|- ..+++-|+-.+.+.
T Consensus 164 v~PG~~~~el~~~~kVIgG--~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~E--N~fRdVNIALaNElali~~~~ 239 (436)
T COG0677 164 VLPGNVLKELVNNPKVIGG--VTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTE--NTFRDVNIALANELALICNAM 239 (436)
T ss_pred cCCCchhhhhhcCCceeec--CCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHh
Confidence 3343322111111123333 367777778888877653 34454332223333322 1121 12334444456789
Q ss_pred CCCHHHHHHHH
Q 024016 201 GLPRELALGLA 211 (274)
Q Consensus 201 Gl~~~~~~~~~ 211 (274)
|++.-++.++.
T Consensus 240 GIdvwevIeaA 250 (436)
T COG0677 240 GIDVWEVIEAA 250 (436)
T ss_pred CCcHHHHHHHh
Confidence 99876665544
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-09 Score=95.92 Aligned_cols=105 Identities=16% Similarity=0.171 Sum_probs=76.0
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHH-hCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCccc-
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVA-KSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV- 83 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~-~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~- 83 (274)
.....++|||||+|+||+++|+.|. ..|. +|++| +|++... . ..++....+..+++++||+|++++|...
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~----~V~~~-d~~~~~~--~-~~~~~~~~~l~ell~~aDvIvl~lP~t~~ 213 (332)
T PRK08605 142 RSIKDLKVAVIGTGRIGLAVAKIFAKGYGS----DVVAY-DPFPNAK--A-ATYVDYKDTIEEAVEGADIVTLHMPATKY 213 (332)
T ss_pred ceeCCCEEEEECCCHHHHHHHHHHHhcCCC----EEEEE-CCCccHh--H-HhhccccCCHHHHHHhCCEEEEeCCCCcc
Confidence 3456789999999999999999994 4566 89999 9886542 1 1234444578889999999999998654
Q ss_pred HHHHH-HHhccccCCCCEEEEecCCCC--HHHHHHhhC
Q 024016 84 VKDVA-MQIRPLLSRKKLLVSVAAGVK--LKDLQEWTG 118 (274)
Q Consensus 84 ~~~v~-~~i~~~l~~~~~vis~~~g~~--~~~l~~~~~ 118 (274)
.+.++ .+..+.++++.++|+++.|.. .+.+.+.+.
T Consensus 214 t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~ 251 (332)
T PRK08605 214 NHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALD 251 (332)
T ss_pred hhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHH
Confidence 33333 345667889999999887654 345555554
|
|
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.1e-09 Score=87.79 Aligned_cols=151 Identities=19% Similarity=0.217 Sum_probs=98.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCC---CCCCcEEEEeCCCHHH---HHHHHH------------------cCceeccC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGV---LPPDRICTAVHSNLKR---RDAFES------------------IGVKVLSD 64 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~---~~~~~v~v~~~r~~~~---~~~l~~------------------~g~~~~~~ 64 (274)
...||+|||.|+||+++++.+.++-. .-..+|..| -+..+. .+.|.+ .++.+.+|
T Consensus 20 ~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmw-v~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~d 98 (372)
T KOG2711|consen 20 DPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMW-VFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPD 98 (372)
T ss_pred CceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEE-EeccccCChhHHHHHHhccccccccccCCccCCCCeEecch
Confidence 45799999999999999998866421 012367777 333211 122221 13455678
Q ss_pred chhhccCCCEEEEeeCcccHHHHHHHhccccCCCCEEEEecCCCCHH-----------HHHHhhCCCceEE-EcCCcHHh
Q 024016 65 NNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLK-----------DLQEWTGHSRFIR-VMPNTPSA 132 (274)
Q Consensus 65 ~~~~~~~aDiIil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~~-----------~l~~~~~~~~~~~-~~p~~~~~ 132 (274)
..+++.+||+++..+|.+.+..++++|..+++++...||+.+|+... .+.+.++ .++.- .-||.+.+
T Consensus 99 l~ea~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lg-I~~~vL~GaNiA~E 177 (372)
T KOG2711|consen 99 LVEAAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALG-IPCSVLMGANIASE 177 (372)
T ss_pred HHHHhccCCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhC-CCceeecCCchHHH
Confidence 88999999999999999999999999999999999999999887632 3344444 22222 23666665
Q ss_pred hcCCc---eEEecCCCCCHHHHHHHHHHhhhcCC
Q 024016 133 VGEAA---TVMSLGGTATEEDGELIGKLFGSVGK 163 (274)
Q Consensus 133 ~~~g~---~~i~~~~~~~~~~~~~v~~ll~~~g~ 163 (274)
+.+.. +.+.+. .+.+.-..+..+|+.-..
T Consensus 178 Va~~~f~e~tIg~~--~~~~~~~~l~~lf~~p~F 209 (372)
T KOG2711|consen 178 VANEKFCETTIGYK--DKKEAGILLKKLFRTPYF 209 (372)
T ss_pred HHhccccceeEecc--chhhcchHHHHHhCCCce
Confidence 54322 223322 123333357788877553
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.4e-09 Score=91.05 Aligned_cols=80 Identities=23% Similarity=0.334 Sum_probs=65.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCc-EEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCcccHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDR-ICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~-v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~ 88 (274)
|||||||+|+||..+++.|.+.+. . .+ +.+| +|++++.+.+.+ .+...+++..+++.++|+|++|+|++...++.
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~-~-~elv~v~-d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~~~~~~~ 78 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRI-N-AELYAFY-DRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVNAVEEVV 78 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCC-C-eEEEEEE-CCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChHHHHHHH
Confidence 699999999999999999987641 0 14 5577 999999888776 56777778888888999999999999988887
Q ss_pred HHhcc
Q 024016 89 MQIRP 93 (274)
Q Consensus 89 ~~i~~ 93 (274)
.++..
T Consensus 79 ~~al~ 83 (265)
T PRK13304 79 PKSLE 83 (265)
T ss_pred HHHHH
Confidence 76654
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-09 Score=87.41 Aligned_cols=107 Identities=18% Similarity=0.292 Sum_probs=77.4
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCc-ccH
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVV 84 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~-~~~ 84 (274)
.....++|||||+|++|+.+++.+..-|. +|++| +|+..........++.. .+..++++.||+|++++|. +..
T Consensus 32 ~~l~g~tvgIiG~G~IG~~vA~~l~~fG~----~V~~~-d~~~~~~~~~~~~~~~~-~~l~ell~~aDiv~~~~plt~~T 105 (178)
T PF02826_consen 32 RELRGKTVGIIGYGRIGRAVARRLKAFGM----RVIGY-DRSPKPEEGADEFGVEY-VSLDELLAQADIVSLHLPLTPET 105 (178)
T ss_dssp S-STTSEEEEESTSHHHHHHHHHHHHTT-----EEEEE-ESSCHHHHHHHHTTEEE-SSHHHHHHH-SEEEE-SSSSTTT
T ss_pred cccCCCEEEEEEEcCCcCeEeeeeecCCc----eeEEe-cccCChhhhccccccee-eehhhhcchhhhhhhhhcccccc
Confidence 34456899999999999999999999998 99999 99987665455567654 5888999999999999983 334
Q ss_pred HHHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 85 KDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 85 ~~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
+.++ .+....+++|.++|++.-| +..+.+.+.+.
T Consensus 106 ~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 106 RGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp TTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred ceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHh
Confidence 4444 2344567899999998754 33456666664
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.6e-09 Score=88.81 Aligned_cols=93 Identities=14% Similarity=0.255 Sum_probs=72.0
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec--cCchhhccCCCEEEEeeCccc
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL--SDNNAVVEYSDVVVFSVKPQV 83 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~--~~~~~~~~~aDiIil~v~~~~ 83 (274)
.....++|+|||+|.||.++++.|...|. +|+++ +|++++.+.+.+.|.... .+..+.++++|+||.++|...
T Consensus 147 ~~l~gk~v~IiG~G~iG~avA~~L~~~G~----~V~v~-~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~i 221 (287)
T TIGR02853 147 FTIHGSNVMVLGFGRTGMTIARTFSALGA----RVFVG-ARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALV 221 (287)
T ss_pred CCCCCCEEEEEcChHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHH
Confidence 34556899999999999999999999998 99999 999988777666665432 345667889999999998653
Q ss_pred HHHHHHHhccccCCCCEEEEecC
Q 024016 84 VKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
+. .+..+.++++.++|++.+
T Consensus 222 i~---~~~l~~~k~~aliIDlas 241 (287)
T TIGR02853 222 LT---ADVLSKLPKHAVIIDLAS 241 (287)
T ss_pred hC---HHHHhcCCCCeEEEEeCc
Confidence 22 233445678889998764
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.4e-09 Score=90.22 Aligned_cols=101 Identities=17% Similarity=0.266 Sum_probs=75.6
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce-eccCchhhccCCCEEEEeeCc-ccH
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK-VLSDNNAVVEYSDVVVFSVKP-QVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~-~~~~~~~~~~~aDiIil~v~~-~~~ 84 (274)
....++|||||+|+||+.+|+.+..-|. +|.+| +|+... .+.. ...+..+++++||+|++++|. ...
T Consensus 119 ~L~gktvgIiG~G~IG~~vA~~l~afG~----~V~~~-~r~~~~------~~~~~~~~~l~ell~~aDiv~~~lp~t~~T 187 (303)
T PRK06436 119 LLYNKSLGILGYGGIGRRVALLAKAFGM----NIYAY-TRSYVN------DGISSIYMEPEDIMKKSDFVLISLPLTDET 187 (303)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC----EEEEE-CCCCcc------cCcccccCCHHHHHhhCCEEEECCCCCchh
Confidence 3456899999999999999998877788 99999 987432 2332 245788999999999999984 456
Q ss_pred HHHHH-HhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 85 KDVAM-QIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 85 ~~v~~-~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
+.++. +....++++.++|+++-| +..+.+.+.+.
T Consensus 188 ~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~ 224 (303)
T PRK06436 188 RGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLR 224 (303)
T ss_pred hcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence 66653 455668899999988754 33456666664
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.5e-09 Score=96.14 Aligned_cols=107 Identities=17% Similarity=0.281 Sum_probs=81.1
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCc-ccH
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVV 84 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~-~~~ 84 (274)
.+...++|||||+|+||+.+|+.|..-|. +|.+| +|... .+.....|+...++..+++++||+|++++|. ...
T Consensus 134 ~~l~gktvgIiG~G~IG~~vA~~l~~fG~----~V~~~-d~~~~-~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T 207 (525)
T TIGR01327 134 TELYGKTLGVIGLGRIGSIVAKRAKAFGM----KVLAY-DPYIS-PERAEQLGVELVDDLDELLARADFITVHTPLTPET 207 (525)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-CCCCC-hhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhh
Confidence 34566899999999999999999999998 99999 98532 2233346776666789999999999999984 456
Q ss_pred HHHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 85 KDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 85 ~~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
+.++ .+....++++.++|+++-| +..+.+.+.+.
T Consensus 208 ~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~ 244 (525)
T TIGR01327 208 RGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALE 244 (525)
T ss_pred ccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHH
Confidence 6666 3455578899999988754 33456666665
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.8e-09 Score=90.53 Aligned_cols=104 Identities=19% Similarity=0.240 Sum_probs=77.1
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccHHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVKD 86 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~~ 86 (274)
...++|||||+|+||..+++.|..-|+ +|.+| +|++++...+.. .....+..+++++||+|++++| ....+.
T Consensus 134 l~g~tvgIvG~G~IG~~vA~~l~afG~----~V~~~-~~~~~~~~~~~~--~~~~~~l~e~l~~aDvvv~~lPlt~~T~~ 206 (312)
T PRK15469 134 REDFTIGILGAGVLGSKVAQSLQTWGF----PLRCW-SRSRKSWPGVQS--FAGREELSAFLSQTRVLINLLPNTPETVG 206 (312)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCCCCCCCcee--ecccccHHHHHhcCCEEEECCCCCHHHHH
Confidence 456899999999999999999999998 99999 987654321111 1112467788999999999998 455666
Q ss_pred HHH-HhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 87 VAM-QIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 87 v~~-~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
++. +....+++|.++|++.-| +..+.|.+.+.
T Consensus 207 li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~ 241 (312)
T PRK15469 207 IINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALD 241 (312)
T ss_pred HhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHh
Confidence 664 466678999999988754 33456666665
|
|
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-08 Score=95.10 Aligned_cols=105 Identities=14% Similarity=0.254 Sum_probs=80.9
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCc-ccHH
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVVK 85 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~-~~~~ 85 (274)
....++|||||+|+||+.+|+.|..-|. +|.+| +|+... +.....|+... +..+++++||+|++++|. ...+
T Consensus 137 ~l~gktvgIiG~G~IG~~vA~~l~~fG~----~V~~~-d~~~~~-~~~~~~g~~~~-~l~ell~~aDiV~l~lP~t~~t~ 209 (526)
T PRK13581 137 ELYGKTLGIIGLGRIGSEVAKRAKAFGM----KVIAY-DPYISP-ERAAQLGVELV-SLDELLARADFITLHTPLTPETR 209 (526)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-CCCCCh-hHHHhcCCEEE-cHHHHHhhCCEEEEccCCChHhh
Confidence 4456899999999999999999999998 99999 986432 23334677665 788999999999999984 4566
Q ss_pred HHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 86 DVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 86 ~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
.++ .+....++++.++|+++-| +..+.+.+.+.
T Consensus 210 ~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~ 245 (526)
T PRK13581 210 GLIGAEELAKMKPGVRIINCARGGIIDEAALAEALK 245 (526)
T ss_pred cCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHh
Confidence 666 4566778999999988754 33456666664
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.8e-08 Score=87.78 Aligned_cols=87 Identities=17% Similarity=0.234 Sum_probs=65.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHh-CCCCCCCcEEEEeCCCHHHHHHHHHc----C--ceeccCchhhccCCCEEEEeeCc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAK-SGVLPPDRICTAVHSNLKRRDAFESI----G--VKVLSDNNAVVEYSDVVVFSVKP 81 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~-~g~~~~~~v~v~~~r~~~~~~~l~~~----g--~~~~~~~~~~~~~aDiIil~v~~ 81 (274)
+..+|+|||+|.||..+++.+.. .+. .+|++| +|++++++.+.+. | +..+.+..+++++||+|+.|++.
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~---~~V~V~-~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s 199 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPI---KQVRVW-GRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLS 199 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCC---CEEEEE-cCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCC
Confidence 45799999999999999986665 332 389999 9999998888762 4 55667788889999999988876
Q ss_pred ccHHHHHHHhccccCCCCEEEE
Q 024016 82 QVVKDVAMQIRPLLSRKKLLVS 103 (274)
Q Consensus 82 ~~~~~v~~~i~~~l~~~~~vis 103 (274)
. ..++.. ..+++|+.|..
T Consensus 200 ~--~pvl~~--~~l~~g~~i~~ 217 (314)
T PRK06141 200 T--EPLVRG--EWLKPGTHLDL 217 (314)
T ss_pred C--CCEecH--HHcCCCCEEEe
Confidence 5 333321 34678874443
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.1e-08 Score=72.15 Aligned_cols=100 Identities=20% Similarity=0.354 Sum_probs=72.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEE-EEeCCCHHHHHHHHH-cCceeccCchhhcc--CCCEEEEeeCcccHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVE--YSDVVVFSVKPQVVKD 86 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~--~aDiIil~v~~~~~~~ 86 (274)
+||||||+|.+|......+.+... ..++. ++ ++++++.+.+.+ .|+..++|..++++ +.|+|++|+|+....+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~--~~~v~~v~-d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~ 77 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSP--DFEVVAVC-DPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAE 77 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTT--TEEEEEEE-CSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCC--CcEEEEEE-eCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHH
Confidence 489999999999999999988732 12554 66 999999988765 78888889988887 7899999999988777
Q ss_pred HHHHhccccCCCCEE-EEecCCCCHHHHHHh
Q 024016 87 VAMQIRPLLSRKKLL-VSVAAGVKLKDLQEW 116 (274)
Q Consensus 87 v~~~i~~~l~~~~~v-is~~~g~~~~~l~~~ 116 (274)
.+..... .|.-| +.---..+.+..++.
T Consensus 78 ~~~~~l~---~g~~v~~EKP~~~~~~~~~~l 105 (120)
T PF01408_consen 78 IAKKALE---AGKHVLVEKPLALTLEEAEEL 105 (120)
T ss_dssp HHHHHHH---TTSEEEEESSSSSSHHHHHHH
T ss_pred HHHHHHH---cCCEEEEEcCCcCCHHHHHHH
Confidence 7766543 33333 332123355555443
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.5e-08 Score=86.30 Aligned_cols=106 Identities=14% Similarity=0.140 Sum_probs=76.1
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH------------HHcCceeccCchhhccCCCE
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF------------ESIGVKVLSDNNAVVEYSDV 74 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l------------~~~g~~~~~~~~~~~~~aDi 74 (274)
....++|||||+|+||+.+|+.|..-|. +|++| +|+..+.... ...+. ...+..+++++||+
T Consensus 156 ~l~gktvGIiG~G~IG~~vA~~l~afG~----~V~~~-dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~~aDi 229 (347)
T PLN02928 156 TLFGKTVFILGYGAIGIELAKRLRPFGV----KLLAT-RRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAGEADI 229 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHhhCCC----EEEEE-CCCCChhhhhhhccccccccccccccC-cccCHHHHHhhCCE
Confidence 3456899999999999999999999898 99999 9874321111 00111 23577889999999
Q ss_pred EEEeeC-cccHHHHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 75 VVFSVK-PQVVKDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 75 Iil~v~-~~~~~~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
|++++| ....+.++ .+....+++|.++|++.-| +..+.|.+.+.
T Consensus 230 Vvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~ 277 (347)
T PLN02928 230 VVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALE 277 (347)
T ss_pred EEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence 999998 34455555 3455668899999998744 34456666665
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.9e-08 Score=85.84 Aligned_cols=74 Identities=19% Similarity=0.258 Sum_probs=61.1
Q ss_pred CCCCCeEEEEccc-HHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccH
Q 024016 7 PAESFILGFIGAG-KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~G-~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~ 84 (274)
+...++|+|||.| .||.+|+..|.++|+ +|++| +|... ++.+++++||+||+|++ +..+
T Consensus 156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~ga----tVtv~-~~~t~--------------~l~e~~~~ADIVIsavg~~~~v 216 (301)
T PRK14194 156 DLTGKHAVVIGRSNIVGKPMAALLLQAHC----SVTVV-HSRST--------------DAKALCRQADIVVAAVGRPRLI 216 (301)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCC----EEEEE-CCCCC--------------CHHHHHhcCCEEEEecCChhcc
Confidence 3456899999996 999999999999999 99999 77632 67788899999999996 5555
Q ss_pred HHHHHHhccccCCCCEEEEec
Q 024016 85 KDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~ 105 (274)
.+.. +++|++||++.
T Consensus 217 ~~~~------ik~GaiVIDvg 231 (301)
T PRK14194 217 DADW------LKPGAVVIDVG 231 (301)
T ss_pred cHhh------ccCCcEEEEec
Confidence 5544 67999999873
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.6e-08 Score=83.07 Aligned_cols=94 Identities=14% Similarity=0.269 Sum_probs=73.1
Q ss_pred CCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec--cCchhhccCCCEEEEeeCcc
Q 024016 5 PIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL--SDNNAVVEYSDVVVFSVKPQ 82 (274)
Q Consensus 5 ~~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~--~~~~~~~~~aDiIil~v~~~ 82 (274)
+.....+|++|||+|.+|..++..|...|. +|+++ +|++++.+.....|.+.. .+..+.+.++|+||.++|+.
T Consensus 147 ~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga----~V~v~-~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~ 221 (296)
T PRK08306 147 PITIHGSNVLVLGFGRTGMTLARTLKALGA----NVTVG-ARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPAL 221 (296)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChh
Confidence 334456899999999999999999999998 99999 999888777766777643 34567788999999999865
Q ss_pred cHHHHHHHhccccCCCCEEEEecC
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
.+ -++....++++.++|++..
T Consensus 222 ~i---~~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 222 VL---TKEVLSKMPPEALIIDLAS 242 (296)
T ss_pred hh---hHHHHHcCCCCcEEEEEcc
Confidence 33 2334455678999998754
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.6e-08 Score=84.16 Aligned_cols=95 Identities=22% Similarity=0.306 Sum_probs=69.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceec--cCchhhccCCCEEEEeeCcccHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVL--SDNNAVVEYSDVVVFSVKPQVVK 85 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~--~~~~~~~~~aDiIil~v~~~~~~ 85 (274)
..++|+|||+|.||..+++.|...|. .+|+++ +|++++++.+++ .|..+. ++..+.+.++|+||.|++.....
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~---~~V~v~-~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~~ 252 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGV---AEITIA-NRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHYA 252 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCC---CEEEEE-eCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCchH
Confidence 46799999999999999999988663 289999 999998877776 565432 34456678899999999866655
Q ss_pred HHHHHhcccc-CCCCEEEEecCC
Q 024016 86 DVAMQIRPLL-SRKKLLVSVAAG 107 (274)
Q Consensus 86 ~v~~~i~~~l-~~~~~vis~~~g 107 (274)
+++....... .++.++|+++.+
T Consensus 253 ~~~~~~~~~~~~~~~~viDlavP 275 (311)
T cd05213 253 KIVERAMKKRSGKPRLIVDLAVP 275 (311)
T ss_pred HHHHHHHhhCCCCCeEEEEeCCC
Confidence 5454433222 256788887654
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.2e-07 Score=75.69 Aligned_cols=92 Identities=18% Similarity=0.203 Sum_probs=67.2
Q ss_pred CCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhc-cCCCEEEEeeCcc
Q 024016 5 PIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVV-EYSDVVVFSVKPQ 82 (274)
Q Consensus 5 ~~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~-~~aDiIil~v~~~ 82 (274)
+..+..++|+|+|+|+||..+++.|.+.|+ +|+++ |+++++.+.+.+ .|....++ .++. .+||+++.|....
T Consensus 23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~----~Vvv~-D~~~~~~~~~~~~~g~~~v~~-~~l~~~~~Dv~vp~A~~~ 96 (200)
T cd01075 23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGA----KLIVA-DINEEAVARAAELFGATVVAP-EEIYSVDADVFAPCALGG 96 (200)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHHHcCCEEEcc-hhhccccCCEEEeccccc
Confidence 445567899999999999999999999999 99999 999998888776 47665544 4444 3899999775543
Q ss_pred c-HHHHHHHhccccCCCCEEEEecCC
Q 024016 83 V-VKDVAMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 83 ~-~~~v~~~i~~~l~~~~~vis~~~g 107 (274)
. ..+.++++ + .++|+.-.++
T Consensus 97 ~I~~~~~~~l----~-~~~v~~~AN~ 117 (200)
T cd01075 97 VINDDTIPQL----K-AKAIAGAANN 117 (200)
T ss_pred ccCHHHHHHc----C-CCEEEECCcC
Confidence 3 33444443 2 3567765554
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.74 E-value=5e-08 Score=86.63 Aligned_cols=103 Identities=14% Similarity=0.179 Sum_probs=74.9
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcc---
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ--- 82 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~--- 82 (274)
.....++|||||+|+||+.+++.+..-|. +|.+| |+..... .+.....+..+++++||+|++++|-.
T Consensus 112 ~~l~gktvGIIG~G~IG~~va~~l~a~G~----~V~~~-Dp~~~~~-----~~~~~~~~l~ell~~aDiV~lh~Plt~~g 181 (381)
T PRK00257 112 VDLAERTYGVVGAGHVGGRLVRVLRGLGW----KVLVC-DPPRQEA-----EGDGDFVSLERILEECDVISLHTPLTKEG 181 (381)
T ss_pred CCcCcCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-CCccccc-----ccCccccCHHHHHhhCCEEEEeCcCCCCc
Confidence 34456899999999999999999999998 99999 8754321 12222357888999999999999842
Q ss_pred --cHHHHH-HHhccccCCCCEEEEecCCC--CHHHHHHhhC
Q 024016 83 --VVKDVA-MQIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (274)
Q Consensus 83 --~~~~v~-~~i~~~l~~~~~vis~~~g~--~~~~l~~~~~ 118 (274)
....++ .+....+++|.++|+++-|- ..+.+.+.+.
T Consensus 182 ~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~ 222 (381)
T PRK00257 182 EHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALL 222 (381)
T ss_pred cccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHH
Confidence 244444 34556688999999887553 3455655553
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.2e-08 Score=84.31 Aligned_cols=106 Identities=14% Similarity=0.204 Sum_probs=79.6
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccHH
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVK 85 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~ 85 (274)
+...+++||||+|++|+.+++.+..-|. +|.+| |+...+. .....+.....+.++++++||+|.+.+| .+..+
T Consensus 139 el~gkTvGIiG~G~IG~~va~~l~afgm----~v~~~-d~~~~~~-~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~ 212 (324)
T COG0111 139 ELAGKTVGIIGLGRIGRAVAKRLKAFGM----KVIGY-DPYSPRE-RAGVDGVVGVDSLDELLAEADILTLHLPLTPETR 212 (324)
T ss_pred cccCCEEEEECCCHHHHHHHHHHHhCCC----eEEEE-CCCCchh-hhccccceecccHHHHHhhCCEEEEcCCCCcchh
Confidence 3446899999999999999999999998 99999 9833222 1112455556788999999999999998 55677
Q ss_pred HHHH-HhccccCCCCEEEEecCCC--CHHHHHHhhC
Q 024016 86 DVAM-QIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (274)
Q Consensus 86 ~v~~-~i~~~l~~~~~vis~~~g~--~~~~l~~~~~ 118 (274)
.++. +....+++|.++|+++=|- ..+.|-+.+.
T Consensus 213 g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~ 248 (324)
T COG0111 213 GLINAEELAKMKPGAILINAARGGVVDEDALLAALD 248 (324)
T ss_pred cccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHH
Confidence 7663 3455688999999887443 3456666665
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.3e-07 Score=82.58 Aligned_cols=106 Identities=14% Similarity=0.207 Sum_probs=76.9
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHH-hCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-ccc
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVA-KSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQV 83 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~-~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~ 83 (274)
.....+++||||+|++|..+++.+. .-|- +|..| +|.... +.....++.. .+..+++++||+|++++| ...
T Consensus 141 ~~L~gktvGIiG~G~IG~~va~~l~~~fgm----~V~~~-~~~~~~-~~~~~~~~~~-~~l~ell~~sDvv~lh~plt~~ 213 (323)
T PRK15409 141 TDVHHKTLGIVGMGRIGMALAQRAHFGFNM----PILYN-ARRHHK-EAEERFNARY-CDLDTLLQESDFVCIILPLTDE 213 (323)
T ss_pred CCCCCCEEEEEcccHHHHHHHHHHHhcCCC----EEEEE-CCCCch-hhHHhcCcEe-cCHHHHHHhCCEEEEeCCCChH
Confidence 3456689999999999999999986 5555 78888 876422 2222356654 478899999999999998 445
Q ss_pred HHHHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 84 VKDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 84 ~~~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
.+.++ .+....++++.++|++.=| +..+.|.+.+.
T Consensus 214 T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~ 251 (323)
T PRK15409 214 THHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQ 251 (323)
T ss_pred HhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence 66666 3455668899999988744 34456766665
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.6e-07 Score=81.64 Aligned_cols=104 Identities=16% Similarity=0.292 Sum_probs=75.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccHHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVKD 86 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~~ 86 (274)
...+++||||+|++|.++|+++..=|- +|..| +|++. .+.-...+..... ..+++++||+|.+.+| ......
T Consensus 144 l~gktvGIiG~GrIG~avA~r~~~Fgm----~v~y~-~~~~~-~~~~~~~~~~y~~-l~ell~~sDii~l~~Plt~~T~h 216 (324)
T COG1052 144 LRGKTLGIIGLGRIGQAVARRLKGFGM----KVLYY-DRSPN-PEAEKELGARYVD-LDELLAESDIISLHCPLTPETRH 216 (324)
T ss_pred CCCCEEEEECCCHHHHHHHHHHhcCCC----EEEEE-CCCCC-hHHHhhcCceecc-HHHHHHhCCEEEEeCCCChHHhh
Confidence 456899999999999999999974444 78888 98875 2222334466554 8899999999999998 445666
Q ss_pred HH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 87 VA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 87 v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
++ .+....++++.++|.+.=| +..+.+-+.+.
T Consensus 217 Lin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~ 251 (324)
T COG1052 217 LINAEELAKMKPGAILVNTARGGLVDEQALIDALK 251 (324)
T ss_pred hcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 66 3455668899999988744 33455655554
|
|
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-07 Score=82.91 Aligned_cols=90 Identities=20% Similarity=0.282 Sum_probs=67.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----cC--ceeccCchhhccCCCEEEEeeCcc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IG--VKVLSDNNAVVEYSDVVVFSVKPQ 82 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~----~g--~~~~~~~~~~~~~aDiIil~v~~~ 82 (274)
+..++||||+|.||...+..+...- +..+|.+| +|++++++.+.+ .| +..+.++.+++++||+|++|||..
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~~--~~~~v~V~-~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~ 203 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRVF--DLEEVSVY-CRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSR 203 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcC--CCCEEEEE-CCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCC
Confidence 4578999999999999888876532 34589999 999999887765 35 456788999999999999999764
Q ss_pred cHHHHHHHhccccCCCCEEEEec
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~~ 105 (274)
. .++. ...++||..|.++.
T Consensus 204 ~--P~~~--~~~l~~g~~v~~vG 222 (325)
T TIGR02371 204 K--PVVK--ADWVSEGTHINAIG 222 (325)
T ss_pred C--cEec--HHHcCCCCEEEecC
Confidence 3 2221 12357888776653
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.6e-07 Score=84.59 Aligned_cols=104 Identities=17% Similarity=0.243 Sum_probs=78.4
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCc-ccH
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVV 84 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~-~~~ 84 (274)
.....++|||||+|++|+.+|+.+..-|. +|..| +|++... ..++....+..++++.||+|.+++|. +..
T Consensus 147 ~~L~gktvGIiG~G~IG~~vA~~~~~fGm----~V~~~-d~~~~~~----~~~~~~~~~l~ell~~sDiVslh~Plt~~T 217 (409)
T PRK11790 147 FEVRGKTLGIVGYGHIGTQLSVLAESLGM----RVYFY-DIEDKLP----LGNARQVGSLEELLAQSDVVSLHVPETPST 217 (409)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-CCCcccc----cCCceecCCHHHHHhhCCEEEEcCCCChHH
Confidence 34566899999999999999999998888 99999 9864321 12344456789999999999999984 456
Q ss_pred HHHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 85 KDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 85 ~~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
+.++ .+....+++|.++|+++-| +..+.+.+.+.
T Consensus 218 ~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~ 254 (409)
T PRK11790 218 KNMIGAEELALMKPGAILINASRGTVVDIDALADALK 254 (409)
T ss_pred hhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHH
Confidence 6666 3455678899999998744 34456666664
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.4e-07 Score=83.60 Aligned_cols=104 Identities=13% Similarity=0.199 Sum_probs=74.6
Q ss_pred CCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCccc-
Q 024016 5 PIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV- 83 (274)
Q Consensus 5 ~~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~- 83 (274)
++....++|||||+|+||+.+++.|..-|. +|.+| |+..... .... ...+..+++++||+|++.+|-..
T Consensus 111 g~~L~gktvGIIG~G~IG~~vA~~l~a~G~----~V~~~-dp~~~~~----~~~~-~~~~L~ell~~sDiI~lh~PLt~~ 180 (378)
T PRK15438 111 GFSLHDRTVGIVGVGNVGRRLQARLEALGI----KTLLC-DPPRADR----GDEG-DFRSLDELVQEADILTFHTPLFKD 180 (378)
T ss_pred CCCcCCCEEEEECcCHHHHHHHHHHHHCCC----EEEEE-CCccccc----cccc-ccCCHHHHHhhCCEEEEeCCCCCC
Confidence 345567899999999999999999999998 99999 8753211 1111 23578899999999999987321
Q ss_pred ----HHHHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 84 ----VKDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 84 ----~~~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
...++ .+....+++|+++|+++=| +..+.+.+.+.
T Consensus 181 g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~ 222 (378)
T PRK15438 181 GPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLN 222 (378)
T ss_pred cccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHH
Confidence 33444 3455668899999998744 34456655554
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.2e-07 Score=70.99 Aligned_cols=94 Identities=12% Similarity=0.211 Sum_probs=63.3
Q ss_pred eEEEEc-ccHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHHcC--ce-e-c--cCchhh-ccCCCEEEEeeCcc
Q 024016 12 ILGFIG-AGKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESIG--VK-V-L--SDNNAV-VEYSDVVVFSVKPQ 82 (274)
Q Consensus 12 ~IgiIG-~G~mG~~~a~~L~~~-g~~~~~~v~v~~~r~~~~~~~l~~~g--~~-~-~--~~~~~~-~~~aDiIil~v~~~ 82 (274)
||+||| .|.+|..++..|.+. ++ ++...+.|++++.+.+...+ +. . . .+..+. ..++|+||+|+|++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~----~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~ 76 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDF----EVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHG 76 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCc----eEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcH
Confidence 689999 599999999999885 55 66544355544433333321 21 1 0 111121 24899999999999
Q ss_pred cHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
...+++..+...+.+|+++|++++...
T Consensus 77 ~~~~~~~~~~~~~~~g~~viD~s~~~~ 103 (122)
T smart00859 77 VSKEIAPLLPKAAEAGVKVIDLSSAFR 103 (122)
T ss_pred HHHHHHHHHHhhhcCCCEEEECCcccc
Confidence 988887766666689999999877654
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.4e-07 Score=74.60 Aligned_cols=91 Identities=19% Similarity=0.360 Sum_probs=69.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCcccHHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAM 89 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~~ 89 (274)
++||+||||++|..+..-+. .|-.+-.-+.+| ||+.+++..+.+ .+....++.++.+++.|+++-|-.++++++...
T Consensus 1 l~vgiVGcGaIG~~l~e~v~-~~~~~~e~v~v~-D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~~Av~e~~~ 78 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVR-DGRVDFELVAVY-DRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASPEAVREYVP 78 (255)
T ss_pred CeEEEEeccHHHHHHHHHHh-cCCcceeEEEEe-cCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCHHHHHHHhH
Confidence 58999999999998887654 442222346677 999999988877 454444788888899999999999999999888
Q ss_pred HhccccCCCCEEEEe
Q 024016 90 QIRPLLSRKKLLVSV 104 (274)
Q Consensus 90 ~i~~~l~~~~~vis~ 104 (274)
+++.. ..+-+|+|+
T Consensus 79 ~~L~~-g~d~iV~SV 92 (255)
T COG1712 79 KILKA-GIDVIVMSV 92 (255)
T ss_pred HHHhc-CCCEEEEec
Confidence 77643 234455565
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.4e-07 Score=80.53 Aligned_cols=102 Identities=20% Similarity=0.267 Sum_probs=76.0
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccHH
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVK 85 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~ 85 (274)
....++|||||+|++|+.+|+.+..-|- +|..| +|..... ..+... .+..++++.||+|++++| .+..+
T Consensus 142 ~L~gktvGIiG~G~IG~~vA~~~~~fgm----~V~~~-d~~~~~~----~~~~~~-~~l~ell~~sDvv~lh~Plt~~T~ 211 (311)
T PRK08410 142 EIKGKKWGIIGLGTIGKRVAKIAQAFGA----KVVYY-STSGKNK----NEEYER-VSLEELLKTSDIISIHAPLNEKTK 211 (311)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhcCC----EEEEE-CCCcccc----ccCcee-ecHHHHhhcCCEEEEeCCCCchhh
Confidence 4567899999999999999999987776 89999 9864321 124433 478899999999999998 44555
Q ss_pred HHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 86 DVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 86 ~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
.++ .+....++++.++|++.-| +..+.|.+.+.
T Consensus 212 ~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~ 247 (311)
T PRK08410 212 NLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALD 247 (311)
T ss_pred cccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 555 3455668899999998744 34556766665
|
|
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.7e-07 Score=79.65 Aligned_cols=103 Identities=18% Similarity=0.239 Sum_probs=78.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccHHHHH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVKDVA 88 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~~v~ 88 (274)
.+||||+|+|++|+.+|++|..-|- .+.-+ +|++.+.+...+.+.. ..+..+.+.++|+|++|+| ......++
T Consensus 162 gK~vgilG~G~IG~~ia~rL~~Fg~----~i~y~-~r~~~~~~~~~~~~~~-~~d~~~~~~~sD~ivv~~pLt~~T~~li 235 (336)
T KOG0069|consen 162 GKTVGILGLGRIGKAIAKRLKPFGC----VILYH-SRTQLPPEEAYEYYAE-FVDIEELLANSDVIVVNCPLTKETRHLI 235 (336)
T ss_pred CCEEEEecCcHHHHHHHHhhhhccc----eeeee-cccCCchhhHHHhccc-ccCHHHHHhhCCEEEEecCCCHHHHHHh
Confidence 4799999999999999999988542 45555 8887777766666655 3467889999999999998 45577777
Q ss_pred -HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 89 -MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 89 -~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
.+...+++++.++|++.=| +.-+.+.+.++
T Consensus 236 Nk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~ 268 (336)
T KOG0069|consen 236 NKKFIEKMKDGAVLVNTARGAIIDEEALVEALK 268 (336)
T ss_pred hHHHHHhcCCCeEEEeccccccccHHHHHHHHh
Confidence 4577788999999988644 33455666665
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.4e-07 Score=80.66 Aligned_cols=72 Identities=21% Similarity=0.274 Sum_probs=58.9
Q ss_pred CCCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeC-CCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-ccc
Q 024016 7 PAESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVH-SNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQV 83 (274)
Q Consensus 7 ~~~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~-r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~ 83 (274)
....++|+||| .|.||.+|+..|.++|+ +|++| + |++ ++.++++.||+||+|++ +..
T Consensus 155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~----tVtv~-~~rT~---------------~l~e~~~~ADIVIsavg~~~~ 214 (296)
T PRK14188 155 DLSGLNAVVIGRSNLVGKPMAQLLLAANA----TVTIA-HSRTR---------------DLPAVCRRADILVAAVGRPEM 214 (296)
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHhCCC----EEEEE-CCCCC---------------CHHHHHhcCCEEEEecCChhh
Confidence 34568999999 99999999999999999 99999 6 553 34677889999999996 444
Q ss_pred HHHHHHHhccccCCCCEEEEe
Q 024016 84 VKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~ 104 (274)
+.+.+ +++|++||++
T Consensus 215 v~~~~------lk~GavVIDv 229 (296)
T PRK14188 215 VKGDW------IKPGATVIDV 229 (296)
T ss_pred cchhe------ecCCCEEEEc
Confidence 44433 6799999986
|
|
| >KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.1e-07 Score=74.07 Aligned_cols=149 Identities=15% Similarity=0.103 Sum_probs=106.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH-----------HHHcC--------------ceecc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA-----------FESIG--------------VKVLS 63 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~-----------l~~~g--------------~~~~~ 63 (274)
+..||+|+|.|.+|++||--+...|| +|.+| |..++..+. |.+.| +..++
T Consensus 2 s~~ki~ivgSgl~g~~WAmlFAs~Gy----qVqlY-DI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~ 76 (313)
T KOG2305|consen 2 SFGKIAIVGSGLVGSSWAMLFASSGY----QVQLY-DILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTT 76 (313)
T ss_pred CccceeEeecccccchHHHHHhccCc----eEEEe-eccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCc
Confidence 35699999999999999999999999 99999 998876432 11222 23456
Q ss_pred CchhhccCCCEEEEeeCcc-c-HHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEE
Q 024016 64 DNNAVVEYSDVVVFSVKPQ-V-VKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVM 140 (274)
Q Consensus 64 ~~~~~~~~aDiIil~v~~~-~-~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i 140 (274)
+..|+++++=.|--|+|.+ . -+.++.++-..+.+.+++-|.++.+.++.+.+-+. ..+++-.||..|...-- ..-+
T Consensus 77 ~l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiP-LvEl 155 (313)
T KOG2305|consen 77 SLNELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIP-LVEL 155 (313)
T ss_pred cHHHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcccc-hhee
Confidence 7789999988888899854 2 34566666666667666656666777776655443 35677788865432211 2335
Q ss_pred ecCCCCCHHHHHHHHHHhhhcCC
Q 024016 141 SLGGTATEEDGELIGKLFGSVGK 163 (274)
Q Consensus 141 ~~~~~~~~~~~~~v~~ll~~~g~ 163 (274)
++.+-.+++.+++-+.+.+.+|.
T Consensus 156 VPaPwTsp~tVdrt~~lM~sigq 178 (313)
T KOG2305|consen 156 VPAPWTSPDTVDRTRALMRSIGQ 178 (313)
T ss_pred ccCCCCChhHHHHHHHHHHHhCC
Confidence 66777789999999999999994
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.7e-07 Score=71.46 Aligned_cols=70 Identities=21% Similarity=0.328 Sum_probs=56.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c---Cce--eccCchhhccCCCEEEEeeCcc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I---GVK--VLSDNNAVVEYSDVVVFSVKPQ 82 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~---g~~--~~~~~~~~~~~aDiIil~v~~~ 82 (274)
+..++.|||+|.+|++++..|.+.|. .+|+++ +|+.++++.+.+ . .+. ..++..+...++|+||.|+|..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~---~~i~i~-nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~ 86 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGA---KEITIV-NRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSG 86 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTS---SEEEEE-ESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCC---CEEEEE-ECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCC
Confidence 56799999999999999999999997 359999 999999998887 3 222 2345556678999999999854
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=98.55 E-value=8.1e-07 Score=79.22 Aligned_cols=108 Identities=18% Similarity=0.216 Sum_probs=75.4
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHH-hCCCCCCCcEEEEeCCCHHH-HHHH-HHcC------------ceeccCchhhcc
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVA-KSGVLPPDRICTAVHSNLKR-RDAF-ESIG------------VKVLSDNNAVVE 70 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~-~~g~~~~~~v~v~~~r~~~~-~~~l-~~~g------------~~~~~~~~~~~~ 70 (274)
.....++|||||+|++|+.+|+.+. .-|. +|..| ||.+.. .+.. ...| .....+..++++
T Consensus 161 ~~L~gktvGIiG~G~IG~~vA~~l~~~fGm----~V~~~-d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~ 235 (386)
T PLN02306 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM----NLIYY-DLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLR 235 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHhcCCC----EEEEE-CCCCchhhhhhhhhhcccccccccccccccccCCHHHHHh
Confidence 3456689999999999999999985 5566 89999 987532 1111 1122 122347889999
Q ss_pred CCCEEEEeeC-cccHHHHHH-HhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 71 YSDVVVFSVK-PQVVKDVAM-QIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 71 ~aDiIil~v~-~~~~~~v~~-~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
+||+|++++| .+..+.++. +....+++|.++|++.=| +..+.+.+.+.
T Consensus 236 ~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~ 287 (386)
T PLN02306 236 EADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLK 287 (386)
T ss_pred hCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 9999999998 445666663 455678999999998744 33456666554
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.2e-07 Score=69.72 Aligned_cols=97 Identities=25% Similarity=0.350 Sum_probs=66.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHh-CCCCCCCcEEEEeCCCHHH-----HHHHH---HcCceeccCchhhccCCCEEEEeeC
Q 024016 11 FILGFIGA-GKMAESIAKGVAK-SGVLPPDRICTAVHSNLKR-----RDAFE---SIGVKVLSDNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~-~g~~~~~~v~v~~~r~~~~-----~~~l~---~~g~~~~~~~~~~~~~aDiIil~v~ 80 (274)
|||+|+|+ |+||+.+++.+.+ .++ ++....+|+++. .-.+. ..|+.+.++..++.+.+|+||-++.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~----~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT~ 76 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGF----ELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFTN 76 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTE----EEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES-
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCc----EEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcCC
Confidence 58999999 9999999999998 555 655443777621 11222 2467778888899989999999998
Q ss_pred cccHHHHHHHhccccCCCCEEEEecCCCCHHHHH
Q 024016 81 PQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQ 114 (274)
Q Consensus 81 ~~~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~ 114 (274)
|+.+.+.++....+ +..+|.-+.|.+.++++
T Consensus 77 p~~~~~~~~~~~~~---g~~~ViGTTG~~~~~~~ 107 (124)
T PF01113_consen 77 PDAVYDNLEYALKH---GVPLVIGTTGFSDEQID 107 (124)
T ss_dssp HHHHHHHHHHHHHH---T-EEEEE-SSSHHHHHH
T ss_pred hHHhHHHHHHHHhC---CCCEEEECCCCCHHHHH
Confidence 88887777665543 55677667787755443
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=4e-07 Score=79.26 Aligned_cols=101 Identities=14% Similarity=0.236 Sum_probs=74.2
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccHH
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVK 85 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~ 85 (274)
....++|||||+|++|+.+++.+..-|. +|..| +|.... . .... ..+..+++++||+|++++| ....+
T Consensus 144 ~l~gktvgIiG~G~IG~~va~~l~~fg~----~V~~~-~~~~~~--~---~~~~-~~~l~ell~~sDiv~l~~Plt~~T~ 212 (314)
T PRK06932 144 DVRGSTLGVFGKGCLGTEVGRLAQALGM----KVLYA-EHKGAS--V---CREG-YTPFEEVLKQADIVTLHCPLTETTQ 212 (314)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhcCCC----EEEEE-CCCccc--c---cccc-cCCHHHHHHhCCEEEEcCCCChHHh
Confidence 3456899999999999999999987776 89888 876421 1 1111 2467899999999999998 44566
Q ss_pred HHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 86 DVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 86 ~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
.++ .+....+++|.++|++.-| +..+.+.+.+.
T Consensus 213 ~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~ 248 (314)
T PRK06932 213 NLINAETLALMKPTAFLINTGRGPLVDEQALLDALE 248 (314)
T ss_pred cccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 666 3455668899999998744 34556766665
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.7e-07 Score=76.69 Aligned_cols=98 Identities=21% Similarity=0.259 Sum_probs=69.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHHH
Q 024016 11 FILGFIGA-GKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~-g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~ 88 (274)
+||+|||+ |+||..+++.+.+. ++ ++...+++++++.......++...++..++++++|+|+.+++|+...+++
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~----elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~p~~~~~~~ 77 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDL----ELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTTPEATLENL 77 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCC----EEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCCHHHHHHHH
Confidence 69999998 99999999888764 44 65543388877654443356666678888787899999999998887777
Q ss_pred HHhccccCCCCEEEEecCCCCHHHHHH
Q 024016 89 MQIRPLLSRKKLLVSVAAGVKLKDLQE 115 (274)
Q Consensus 89 ~~i~~~l~~~~~vis~~~g~~~~~l~~ 115 (274)
..... .|+-++.-+.|.+.+...+
T Consensus 78 ~~al~---~G~~vvigttG~s~~~~~~ 101 (257)
T PRK00048 78 EFALE---HGKPLVIGTTGFTEEQLAE 101 (257)
T ss_pred HHHHH---cCCCEEEECCCCCHHHHHH
Confidence 65543 3444444456777665543
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.6e-07 Score=78.04 Aligned_cols=100 Identities=16% Similarity=0.233 Sum_probs=74.3
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccHH
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVK 85 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~ 85 (274)
....++|||||+|++|+.+|+.+..-|. +|..| +|.... . ... ..+..++++.||+|++++| ....+
T Consensus 145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm----~V~~~-~~~~~~-~-----~~~-~~~l~ell~~sDiv~l~lPlt~~T~ 212 (317)
T PRK06487 145 ELEGKTLGLLGHGELGGAVARLAEAFGM----RVLIG-QLPGRP-A-----RPD-RLPLDELLPQVDALTLHCPLTEHTR 212 (317)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhCCC----EEEEE-CCCCCc-c-----ccc-ccCHHHHHHhCCEEEECCCCChHHh
Confidence 4466899999999999999999987777 89999 886321 1 111 2367889999999999998 44566
Q ss_pred HHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 86 DVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 86 ~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
.++ .+....++++.++|++.=| +..+.+.+.+.
T Consensus 213 ~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~ 248 (317)
T PRK06487 213 HLIGARELALMKPGALLINTARGGLVDEQALADALR 248 (317)
T ss_pred cCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence 666 3455668899999998744 34456666665
|
|
| >TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.2e-05 Score=66.85 Aligned_cols=163 Identities=14% Similarity=0.207 Sum_probs=110.2
Q ss_pred CceeccCchhhccCCCEEEEeeCccc-HHHHHHHhccccCCCCEEEEecCCCCHHHHHHhh---C--CCceEEEcCCcHH
Q 024016 58 GVKVLSDNNAVVEYSDVVVFSVKPQV-VKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWT---G--HSRFIRVMPNTPS 131 (274)
Q Consensus 58 g~~~~~~~~~~~~~aDiIil~v~~~~-~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~---~--~~~~~~~~p~~~~ 131 (274)
|+++.+|..|+++++|++|+-+|-.. -.++++++.++++.|.+|.++ .++++-.+.+.+ + +..+.++||....
T Consensus 126 GvkVtsDD~EAv~~aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~t-CTIpt~~ly~ilE~l~R~DvgVsS~HPaaVP 204 (340)
T TIGR01723 126 GLKVTTDDREAVEDADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHA-CTIPTTKFAKIFEDLGREDLNVTSYHPGCVP 204 (340)
T ss_pred CceEecCcHHHhcCCCEEEEEcCCCCCchHHHHHHHhhCCCCCEEecc-ccCChHHHHHHHHhhCcccCCeeccCCCCCC
Confidence 67788888999999999999999665 578889999999999876654 445554443333 2 3567777776432
Q ss_pred hhcCCceEEecCCCCCHHHHHHHHHHhhhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHH---HH-HHcCCCHHH
Q 024016 132 AVGEAATVMSLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALAD---GG-VAAGLPREL 206 (274)
Q Consensus 132 ~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e---~~-~~~Gl~~~~ 206 (274)
...++..++ -.-.++++++++.++.+..|+. +.++.+......-+++ ...+....++.+ .. +-.|-+.+.
T Consensus 205 gt~~q~Yi~--egyAtEEqI~klveL~~sa~k~ay~~PA~LvspV~DMgS---~VTAv~~aGiL~Y~~~~t~IlgAP~~m 279 (340)
T TIGR01723 205 EMKGQVYIA--EGYASEEAVNKLYELGKKARGKAFKMPANLLGPVCDMCS---AVTAIVYAGLLAYRDAVTKILGAPADF 279 (340)
T ss_pred CCCCceEee--cccCCHHHHHHHHHHHHHhCCCeeecchhhccchhhHHH---HHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 222222222 2235789999999999999976 7788776655544432 222222333332 22 347888888
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 024016 207 ALGLASQTVLGAASMVTKSG 226 (274)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~ 226 (274)
+.+.+..++...+.+++.+|
T Consensus 280 iq~qa~eaL~tmasLme~~G 299 (340)
T TIGR01723 280 AQMMADEALTQIHNLMEEKG 299 (340)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 88888888888888877655
|
This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201. |
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.1e-06 Score=73.38 Aligned_cols=81 Identities=20% Similarity=0.268 Sum_probs=63.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcE-EEEeCCCHHHHHHHHHcCceeccCchhh-ccCCCEEEEeeCcccHHHH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAV-VEYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v-~v~~~r~~~~~~~l~~~g~~~~~~~~~~-~~~aDiIil~v~~~~~~~v 87 (274)
.+||||||+|+||..++..|.+.+. ...++ .++ +|++++.+.+.+. +.++++..++ ..++|+|+-|-.++.+++.
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~-~~~~l~~V~-~~~~~~~~~~~~~-~~~~~~l~~ll~~~~DlVVE~A~~~av~e~ 78 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAA-QPCQLAALT-RNAADLPPALAGR-VALLDGLPGLLAWRPDLVVEAAGQQAIAEH 78 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCC-CceEEEEEe-cCCHHHHHHhhcc-CcccCCHHHHhhcCCCEEEECCCHHHHHHH
Confidence 3799999999999999999865432 11244 455 8998888877654 6677888886 6789999999999999998
Q ss_pred HHHhcc
Q 024016 88 AMQIRP 93 (274)
Q Consensus 88 ~~~i~~ 93 (274)
...++.
T Consensus 79 ~~~iL~ 84 (267)
T PRK13301 79 AEGCLT 84 (267)
T ss_pred HHHHHh
Confidence 887764
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.5e-06 Score=75.44 Aligned_cols=87 Identities=24% Similarity=0.235 Sum_probs=66.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHh-CCCCCCCcEEEEeCCCHHHHHHHHH----cCcee-ccCchhhccCCCEEEEeeCcc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAK-SGVLPPDRICTAVHSNLKRRDAFES----IGVKV-LSDNNAVVEYSDVVVFSVKPQ 82 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~-~g~~~~~~v~v~~~r~~~~~~~l~~----~g~~~-~~~~~~~~~~aDiIil~v~~~ 82 (274)
+..+++|||+|.+|...+..+.. .+. .+|.+| +|++++++.+.+ .+..+ ..+..+++.++|+|+.|+|..
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~---~~v~v~-~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~ 199 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPV---RRVWVR-GRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSR 199 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCC---CEEEEE-cCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCC
Confidence 45799999999999999999975 343 489999 999999888776 23333 356778899999999999866
Q ss_pred cHHHHHHHhccccCCCCEEEEe
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~ 104 (274)
. .++.. .++||+.|..+
T Consensus 200 ~--Pl~~~---~~~~g~hi~~i 216 (304)
T PRK07340 200 T--PVYPE---AARAGRLVVAV 216 (304)
T ss_pred C--ceeCc---cCCCCCEEEec
Confidence 4 33332 36788876655
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.2e-06 Score=65.74 Aligned_cols=95 Identities=23% Similarity=0.385 Sum_probs=65.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--------c--CceeccCchhhccCCCEEEEee
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------I--GVKVLSDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~--------~--g~~~~~~~~~~~~~aDiIil~v 79 (274)
|||+|||+ |++|++++..|...+.. .++.++ |+++++++.... . ...+..+..+.+++||+|+++.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~--~ei~L~-D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvita 77 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLA--DEIVLI-DINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITA 77 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTS--SEEEEE-ESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETT
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCC--CceEEe-ccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEec
Confidence 69999999 99999999999999874 379999 999776543321 1 2344456677789999999986
Q ss_pred --C--cc-c-----------HHHHHHHhccccCCCCEEEEecCCCC
Q 024016 80 --K--PQ-V-----------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 80 --~--~~-~-----------~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
| +. . ++++.+.+..+- |+.+++-.++++.
T Consensus 78 g~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtNPvd 122 (141)
T PF00056_consen 78 GVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTNPVD 122 (141)
T ss_dssp STSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SSSHH
T ss_pred cccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCCcHH
Confidence 2 21 1 233334455543 6677777777654
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.6e-06 Score=79.99 Aligned_cols=96 Identities=25% Similarity=0.347 Sum_probs=69.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c-Cce----eccCchhhccCCCEEEEeeC-
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I-GVK----VLSDNNAVVEYSDVVVFSVK- 80 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~-g~~----~~~~~~~~~~~aDiIil~v~- 80 (274)
....+|+|||+|.||..+++.|...|. .+|+++ +|++++++.+.+ . +.. ..++..+.+.++|+||.||+
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~---~~V~V~-nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s 339 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGC---TKMVVV-NRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSS 339 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCC---CeEEEE-eCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCC
Confidence 456799999999999999999999885 369999 999999988876 3 332 22455677889999999985
Q ss_pred --cccHHHHHHHhcccc---CCCCEEEEecCC
Q 024016 81 --PQVVKDVAMQIRPLL---SRKKLLVSVAAG 107 (274)
Q Consensus 81 --~~~~~~v~~~i~~~l---~~~~~vis~~~g 107 (274)
|-...+.++.+.+.- ....++|++.-+
T Consensus 340 ~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvP 371 (519)
T PLN00203 340 ETPLFLKEHVEALPPASDTVGGKRLFVDISVP 371 (519)
T ss_pred CCCeeCHHHHHHhhhcccccCCCeEEEEeCCC
Confidence 333556666654211 122477787544
|
|
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.42 E-value=8.1e-07 Score=76.80 Aligned_cols=87 Identities=11% Similarity=0.180 Sum_probs=57.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC-CCCCCCcEE-EEeCCCH-HHHHHHHHcCceeccCchhhccCCCEEEEeeCcccH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKS-GVLPPDRIC-TAVHSNL-KRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVV 84 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~-g~~~~~~v~-v~~~r~~-~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~ 84 (274)
|+++||+|||+|+||...+..+.++ ++ ++. +| +|++ ++.. ...++....+..+...+.|+|++|+|+..-
T Consensus 1 M~kIRVgIVG~GnIGr~~a~al~~~pd~----ELVgV~-dr~~~~~~~--~~~~v~~~~d~~e~l~~iDVViIctPs~th 73 (324)
T TIGR01921 1 MSKIRAAIVGYGNLGRSVEKAIQQQPDM----ELVGVF-SRRGAETLD--TETPVYAVADDEKHLDDVDVLILCMGSATD 73 (324)
T ss_pred CCCcEEEEEeecHHHHHHHHHHHhCCCc----EEEEEE-cCCcHHHHh--hcCCccccCCHHHhccCCCEEEEcCCCccC
Confidence 3468999999999999999999865 44 665 56 8885 4332 123443334556667789999999986654
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
.+....+ +..|.-+|+.
T Consensus 74 ~~~~~~~---L~aG~NVV~s 90 (324)
T TIGR01921 74 IPEQAPY---FAQFANTVDS 90 (324)
T ss_pred HHHHHHH---HHcCCCEEEC
Confidence 3333222 3345555644
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=2e-05 Score=65.43 Aligned_cols=163 Identities=13% Similarity=0.207 Sum_probs=109.5
Q ss_pred CceeccCchhhccCCCEEEEeeCccc-HHHHHHHhccccCCCCEEEEecCCCCHHHHHHhh---C--CCceEEEcCCcHH
Q 024016 58 GVKVLSDNNAVVEYSDVVVFSVKPQV-VKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWT---G--HSRFIRVMPNTPS 131 (274)
Q Consensus 58 g~~~~~~~~~~~~~aDiIil~v~~~~-~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~---~--~~~~~~~~p~~~~ 131 (274)
|+++.+|..|+++++|++|+-+|-.. -.++++++.++++.|.+|.++ .++++-.+.+.+ + +..+.++||....
T Consensus 128 GvkVtsDD~EAvk~aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~t-CTIpt~~ly~~le~l~R~DvgIsS~HPaaVP 206 (342)
T PRK00961 128 GLKVTTDDREAVADADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHA-CTIPTTKFAKIFKDLGRDDLNVTSYHPGAVP 206 (342)
T ss_pred CceEecCcHHHhcCCCEEEEecCCCCCchHHHHHHHhhCCCCCEEecc-ccCCHHHHHHHHHHhCcccCCeeccCCCCCC
Confidence 67788888999999999999999665 578889999999999876654 456654443333 2 3567777775321
Q ss_pred hhcCCceEEecCCCCCHHHHHHHHHHhhhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHH---HH-HHcCCCHHH
Q 024016 132 AVGEAATVMSLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALAD---GG-VAAGLPREL 206 (274)
Q Consensus 132 ~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e---~~-~~~Gl~~~~ 206 (274)
.. .|...+.- .-.++++++++.++.+..|+. +.++.+....+.-+++ ...+....++.+ .. +-.|-+.+.
T Consensus 207 gt-~Gq~~i~e-gyAtEEqI~klveL~~sa~k~ay~~PA~lvspV~DMgS---~VTAv~~aGiL~Y~~~~tqIlgAP~~m 281 (342)
T PRK00961 207 EM-KGQVYIAE-GYADEEAVEKLYEIGKKARGNAFKMPANLIGPVCDMCS---AVTAIVYAGILAYRDAVTQILGAPADF 281 (342)
T ss_pred CC-CCceeccc-ccCCHHHHHHHHHHHHHhCCCeeecchhhcchhhhHHH---HHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 11 13332221 234789999999999999976 7788776655544432 222222333332 22 347888888
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 024016 207 ALGLASQTVLGAASMVTKSG 226 (274)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~ 226 (274)
+.+.+..++...+.+++.+|
T Consensus 282 ie~qa~eaL~tmasLme~~G 301 (342)
T PRK00961 282 AQMMADEALTQITALMREEG 301 (342)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 88888888888888877655
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.9e-06 Score=75.50 Aligned_cols=87 Identities=18% Similarity=0.288 Sum_probs=66.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHH-----cCc--eeccCchhhccCCCEEEEeeC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFES-----IGV--KVLSDNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~-g~~~~~~v~v~~~r~~~~~~~l~~-----~g~--~~~~~~~~~~~~aDiIil~v~ 80 (274)
...+++|||+|.+|...+..+... +. .+|.+| +|++++.+++.+ .++ ...++..+++.++|+|+.|+|
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~---~~v~v~-~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~ 201 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDI---ERVRVY-SRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTN 201 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCc---cEEEEE-CCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccC
Confidence 456899999999999998887643 32 489999 999999887765 244 345677888999999999998
Q ss_pred cccHHHHHHHhccccCCCCEEEEe
Q 024016 81 PQVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 81 ~~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
... .++. ..+++|+.|+++
T Consensus 202 s~~--p~i~---~~l~~G~hV~~i 220 (325)
T PRK08618 202 AKT--PVFS---EKLKKGVHINAV 220 (325)
T ss_pred CCC--cchH---HhcCCCcEEEec
Confidence 663 3333 346899887766
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.9e-06 Score=74.89 Aligned_cols=95 Identities=18% Similarity=0.292 Sum_probs=65.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--------cC--ceeccCchhhccCCCEEEEeeC
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------IG--VKVLSDNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~--------~g--~~~~~~~~~~~~~aDiIil~v~ 80 (274)
+||+|||+|.+|++++..|...|.. .+|.++ ||++++++.+.. .+ ..+.....+.+.+||+||+++.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~--~ei~l~-D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag 77 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIA--DELVLI-DINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAG 77 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCC--CEEEEE-eCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccC
Confidence 4899999999999999999998841 279999 999887765443 12 2233334456789999999984
Q ss_pred c----c------------cHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 81 P----Q------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 81 ~----~------------~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
. . .++++.+.+..+ .|+.+++..+++..
T Consensus 78 ~~~~~g~~R~dll~~N~~i~~~~~~~i~~~-~~~~~vivvsNP~d 121 (306)
T cd05291 78 APQKPGETRLDLLEKNAKIMKSIVPKIKAS-GFDGIFLVASNPVD 121 (306)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEecChHH
Confidence 2 1 134444555554 45667777767654
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.5e-06 Score=73.91 Aligned_cols=89 Identities=16% Similarity=0.177 Sum_probs=58.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC--HHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN--LKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~--~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~ 88 (274)
+||||||+|+||..+++.+.+.... ++...+++. .++.......++.++++..++..+.|+|+.|+++....+..
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~---~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~~e~~ 78 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDL---RVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAALKEHV 78 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCc---eEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHHHHHH
Confidence 6999999999999999999875321 443332443 23322222236667777776645689999999988777766
Q ss_pred HHhccccCCCCEEEEec
Q 024016 89 MQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 89 ~~i~~~l~~~~~vis~~ 105 (274)
.... ..|+-++..+
T Consensus 79 ~~aL---~aGk~Vvi~s 92 (265)
T PRK13303 79 VPIL---KAGIDCAVIS 92 (265)
T ss_pred HHHH---HcCCCEEEeC
Confidence 6554 3444455443
|
|
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.1e-06 Score=73.64 Aligned_cols=90 Identities=10% Similarity=0.136 Sum_probs=68.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----cCc--eeccCchhhccCCCEEEEeeCcc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IGV--KVLSDNNAVVEYSDVVVFSVKPQ 82 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~----~g~--~~~~~~~~~~~~aDiIil~v~~~ 82 (274)
+..+++|||+|..+...++.+... + +..+|.+| +|++++++.+.+ .++ .++++.++++++||||+.||+..
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v-~-~i~~v~v~-~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~ 203 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNV-T-DCRQLWVW-GRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSR 203 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhc-C-CCCEEEEE-CCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCC
Confidence 457899999999999999988764 2 45699999 999999887765 243 44678889999999999999755
Q ss_pred cHHHHHHHhccccCCCCEEEEec
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~~ 105 (274)
. .+++. ..++||+.|..+.
T Consensus 204 ~--P~~~~--~~l~~G~hi~~iG 222 (315)
T PRK06823 204 E--PLLQA--EDIQPGTHITAVG 222 (315)
T ss_pred C--ceeCH--HHcCCCcEEEecC
Confidence 3 33321 2467888777653
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.8e-06 Score=73.92 Aligned_cols=94 Identities=21% Similarity=0.241 Sum_probs=64.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH----H----c--Ccee--ccCchhhccCCCEEEE
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S----I--GVKV--LSDNNAVVEYSDVVVF 77 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~----~----~--g~~~--~~~~~~~~~~aDiIil 77 (274)
++||+|||+|.||..++..+...|+ . +|.++ |+++++.+... . . ..++ ..+. +.+++||+||+
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~--~-ev~L~-D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii 76 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKEL--G-DVVLF-DIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVI 76 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC--e-EEEEE-ECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEE
Confidence 3699999999999999999998875 2 79999 99876653221 1 1 1233 2333 56889999999
Q ss_pred ee--Cc--------------ccHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 78 SV--KP--------------QVVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 78 ~v--~~--------------~~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
++ |. +.++++++++.+.. ++.++|..+++..
T Consensus 77 ~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP~d 123 (307)
T PRK06223 77 TAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVTNPVD 123 (307)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHH
Confidence 96 22 22556666676665 5566776767654
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=98.36 E-value=4e-06 Score=72.73 Aligned_cols=94 Identities=17% Similarity=0.176 Sum_probs=64.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH-H---HHH------cC--ceeccCchhhccCCCEEEEe
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD-A---FES------IG--VKVLSDNNAVVEYSDVVVFS 78 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~-~---l~~------~g--~~~~~~~~~~~~~aDiIil~ 78 (274)
|||+|||+|.||..+|..+...|+. +|.++ |++++..+ . +.. .. ++...+..+ +++||+||++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~---~Vvlv-Di~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIit 76 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELA---DLVLL-DVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVIT 76 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCC---eEEEE-eCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEc
Confidence 5899999999999999999998862 68899 88665433 1 111 11 223345554 7899999999
Q ss_pred eC--c--------------ccHHHHHHHhccccCCCCEEEEecCCCCH
Q 024016 79 VK--P--------------QVVKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (274)
Q Consensus 79 v~--~--------------~~~~~v~~~i~~~l~~~~~vis~~~g~~~ 110 (274)
+. . +.++++.+++.++. ++..+|..+++...
T Consensus 77 ag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~tNP~di 123 (305)
T TIGR01763 77 AGLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVSNPLDA 123 (305)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHH
Confidence 85 1 12445556666664 66778888887653
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.5e-06 Score=75.90 Aligned_cols=94 Identities=26% Similarity=0.435 Sum_probs=67.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCcee--ccCchhhccCCCEEEEeeC--ccc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKV--LSDNNAVVEYSDVVVFSVK--PQV 83 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~--~~~~~~~~~~aDiIil~v~--~~~ 83 (274)
...++.|||+|-||...++.|..+|. .+|++. ||+.++++.|++ .|..+ .++..+.+.++|+||.||. ...
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~---~~i~Ia-NRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~~~i 252 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGV---KKITIA-NRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAPHPI 252 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCC---CEEEEE-cCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCCccc
Confidence 45789999999999999999999996 389999 999999999987 66443 3555677889999999983 233
Q ss_pred H-HHHHHHhccccCCCCEEEEecCC
Q 024016 84 V-KDVAMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 84 ~-~~v~~~i~~~l~~~~~vis~~~g 107 (274)
+ .+-+...... ++.-++|++..+
T Consensus 253 i~~~~ve~a~~~-r~~~livDiavP 276 (414)
T COG0373 253 ITREMVERALKI-RKRLLIVDIAVP 276 (414)
T ss_pred cCHHHHHHHHhc-ccCeEEEEecCC
Confidence 2 2223322211 222467777544
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.4e-06 Score=77.28 Aligned_cols=92 Identities=13% Similarity=0.113 Sum_probs=70.2
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHH
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~ 86 (274)
....++|+|||+|.+|..+|+.+...|. +|+++ ++++.+.......|+... +..++++.+|+|++++....
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga----~ViV~-e~dp~~a~~A~~~G~~~~-~leell~~ADIVI~atGt~~--- 321 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGA----RVVVT-EIDPICALQAAMEGYQVV-TLEDVVETADIFVTATGNKD--- 321 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCchhHHHHHhcCceec-cHHHHHhcCCEEEECCCccc---
Confidence 4456899999999999999999999998 89999 999877654444677653 56788999999999974322
Q ss_pred HHH-HhccccCCCCEEEEecCC
Q 024016 87 VAM-QIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 87 v~~-~i~~~l~~~~~vis~~~g 107 (274)
++. +....++++.+++++.-+
T Consensus 322 iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 322 IITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred ccCHHHHhccCCCcEEEEcCCC
Confidence 232 334456899999987544
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.5e-06 Score=78.90 Aligned_cols=95 Identities=27% Similarity=0.342 Sum_probs=66.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCcee--ccCchhhccCCCEEEEeeCccc--
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKV--LSDNNAVVEYSDVVVFSVKPQV-- 83 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~--~~~~~~~~~~aDiIil~v~~~~-- 83 (274)
..++|+|||+|.||..+++.|...|. .+|+++ +|++++++.+.+ .|..+ ..+..+.+.++|+||.|++...
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~G~---~~V~v~-~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~~~ 256 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEKGV---RKITVA-NRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPHPI 256 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHCCC---CeEEEE-eCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCCcE
Confidence 45799999999999999999998885 379999 999999887766 45332 2345566789999999996432
Q ss_pred -HHHHHHHhc-cccCCCCEEEEecCC
Q 024016 84 -VKDVAMQIR-PLLSRKKLLVSVAAG 107 (274)
Q Consensus 84 -~~~v~~~i~-~~l~~~~~vis~~~g 107 (274)
..+.++... ..-..+.+++++..+
T Consensus 257 i~~~~l~~~~~~~~~~~~vviDla~P 282 (423)
T PRK00045 257 IGKGMVERALKARRHRPLLLVDLAVP 282 (423)
T ss_pred EcHHHHHHHHhhccCCCeEEEEeCCC
Confidence 233443322 111234677787543
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=98.35 E-value=8e-07 Score=66.41 Aligned_cols=90 Identities=11% Similarity=0.163 Sum_probs=61.0
Q ss_pred eEEEEc-ccHHHHHHHHHHHhCCCCCCCcE-EEEeCCCHHHHHHHHH-----c---CceeccCchhhccCCCEEEEeeCc
Q 024016 12 ILGFIG-AGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFES-----I---GVKVLSDNNAVVEYSDVVVFSVKP 81 (274)
Q Consensus 12 ~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v-~v~~~r~~~~~~~l~~-----~---g~~~~~~~~~~~~~aDiIil~v~~ 81 (274)
||+||| +|.+|..+.+.|.++-+ .++ .++ .++.+.-..+.. . ...+.+...+...++|+||+|+|.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~---~e~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~ 76 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPD---FELVALV-SSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPH 76 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTST---EEEEEEE-ESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCC---ccEEEee-eeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCch
Confidence 799999 99999999999988432 243 445 665522222222 1 122333234456899999999999
Q ss_pred ccHHHHHHHhccccCCCCEEEEecCCC
Q 024016 82 QVVKDVAMQIRPLLSRKKLLVSVAAGV 108 (274)
Q Consensus 82 ~~~~~v~~~i~~~l~~~~~vis~~~g~ 108 (274)
....++...+. .+|..||+.++..
T Consensus 77 ~~~~~~~~~~~---~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 77 GASKELAPKLL---KAGIKVIDLSGDF 100 (121)
T ss_dssp HHHHHHHHHHH---HTTSEEEESSSTT
T ss_pred hHHHHHHHHHh---hCCcEEEeCCHHH
Confidence 99888887763 5778899987765
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.4e-06 Score=73.02 Aligned_cols=89 Identities=20% Similarity=0.286 Sum_probs=67.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----cC--ceeccCchhhccCCCEEEEeeCc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IG--VKVLSDNNAVVEYSDVVVFSVKP 81 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-----~g--~~~~~~~~~~~~~aDiIil~v~~ 81 (274)
+..+++|||+|..|...++.+..- + +..+|.+| +|++++++.+.+ .| +.+++++++++.+||||+.||+.
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v-~-~i~~v~v~-~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s 192 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASV-Y-NPKRIRVY-SRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNS 192 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc-C-CCCEEEEE-CCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCC
Confidence 457899999999999999988874 2 45689999 999999888765 24 45668899999999999999986
Q ss_pred ccHHHHHHHhccccCCCCEEEEe
Q 024016 82 QVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 82 ~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
.. .++. ...++||..|..+
T Consensus 193 ~~--P~~~--~~~l~pg~hV~ai 211 (301)
T PRK06407 193 DT--PIFN--RKYLGDEYHVNLA 211 (301)
T ss_pred CC--cEec--HHHcCCCceEEec
Confidence 53 3331 1245788665544
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.3e-06 Score=64.36 Aligned_cols=98 Identities=16% Similarity=0.215 Sum_probs=65.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCccc-H-HH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-V-KD 86 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~-~-~~ 86 (274)
..+++.|+|.|..|+.+|+.|...|- +|+|+ +++|-++-+..-.|.++. +..+++..+|++|.++-... + .+
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~~Ga----~V~V~-e~DPi~alqA~~dGf~v~-~~~~a~~~adi~vtaTG~~~vi~~e 95 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRGLGA----RVTVT-EIDPIRALQAAMDGFEVM-TLEEALRDADIFVTATGNKDVITGE 95 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHHTT-----EEEEE--SSHHHHHHHHHTT-EEE--HHHHTTT-SEEEE-SSSSSSB-HH
T ss_pred CCCEEEEeCCCcccHHHHHHHhhCCC----EEEEE-ECChHHHHHhhhcCcEec-CHHHHHhhCCEEEECCCCccccCHH
Confidence 45789999999999999999999998 99999 999977655555788875 57888999999999996543 2 34
Q ss_pred HHHHhccccCCCCEEEEecC---CCCHHHHHHh
Q 024016 87 VAMQIRPLLSRKKLLVSVAA---GVKLKDLQEW 116 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~~---g~~~~~l~~~ 116 (274)
-+.+ ++++.++.+... .+..+.+.+.
T Consensus 96 ~~~~----mkdgail~n~Gh~d~Eid~~~L~~~ 124 (162)
T PF00670_consen 96 HFRQ----MKDGAILANAGHFDVEIDVDALEAN 124 (162)
T ss_dssp HHHH----S-TTEEEEESSSSTTSBTHHHHHTC
T ss_pred HHHH----hcCCeEEeccCcCceeEeecccccc
Confidence 4444 567766665421 2334455543
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.4e-06 Score=73.91 Aligned_cols=73 Identities=15% Similarity=0.211 Sum_probs=59.2
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccH
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~ 84 (274)
+...++|+|||. |.||.+|+..|+++|+ +|++| .... .++.+.+++||+||.|++ +..+
T Consensus 155 ~l~Gk~v~vIG~S~ivG~Pla~lL~~~ga----tVtv~-~s~t--------------~~l~~~~~~ADIVI~avg~~~~v 215 (284)
T PRK14179 155 ELEGKHAVVIGRSNIVGKPMAQLLLDKNA----TVTLT-HSRT--------------RNLAEVARKADILVVAIGRGHFV 215 (284)
T ss_pred CCCCCEEEEECCCCcCcHHHHHHHHHCCC----EEEEE-CCCC--------------CCHHHHHhhCCEEEEecCccccC
Confidence 345689999999 9999999999999998 99999 4321 156778899999999996 5555
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
.... +++|+++|++
T Consensus 216 ~~~~------ik~GavVIDv 229 (284)
T PRK14179 216 TKEF------VKEGAVVIDV 229 (284)
T ss_pred CHHH------ccCCcEEEEe
Confidence 5543 6899999987
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.4e-06 Score=76.40 Aligned_cols=95 Identities=22% Similarity=0.315 Sum_probs=65.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCcee--ccCchhhccCCCEEEEeeCccc--
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKV--LSDNNAVVEYSDVVVFSVKPQV-- 83 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~--~~~~~~~~~~aDiIil~v~~~~-- 83 (274)
...+|+|||+|.||..+++.|...|. .+|+++ +|++++++.+.+ .|... ..+..+.+.++|+||.|++...
T Consensus 179 ~~~~VlViGaG~iG~~~a~~L~~~G~---~~V~v~-~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~~i 254 (417)
T TIGR01035 179 KGKKALLIGAGEMGELVAKHLLRKGV---GKILIA-NRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPHPI 254 (417)
T ss_pred cCCEEEEECChHHHHHHHHHHHHCCC---CEEEEE-eCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCCce
Confidence 45799999999999999999999883 289999 999998877765 45332 2445567789999999996332
Q ss_pred -HHHHHHHhccccCCCCEEEEecCC
Q 024016 84 -VKDVAMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 84 -~~~v~~~i~~~l~~~~~vis~~~g 107 (274)
-.+.+......-+...+++++..+
T Consensus 255 i~~e~l~~~~~~~~~~~~viDla~P 279 (417)
T TIGR01035 255 VSKEDVERALRERTRPLFIIDIAVP 279 (417)
T ss_pred EcHHHHHHHHhcCCCCeEEEEeCCC
Confidence 223343322111122367777543
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.32 E-value=3e-06 Score=74.45 Aligned_cols=91 Identities=13% Similarity=0.107 Sum_probs=67.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----cC--ceeccCchhhccCCCEEEEeeCcc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IG--VKVLSDNNAVVEYSDVVVFSVKPQ 82 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~----~g--~~~~~~~~~~~~~aDiIil~v~~~ 82 (274)
+..+++|||+|..+...++.+..-- +..+|++| +|++++++.+.+ .+ +.++++.++++++||+|+.||++.
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr--~i~~V~v~-~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~ 204 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALL--GIEEIRLY-DIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADK 204 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhC--CceEEEEE-eCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC
Confidence 4568999999999999988887642 44689999 999999887765 24 445688899999999999999754
Q ss_pred cHHHHHHHhccccCCCCEEEEe
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~ 104 (274)
.-..++.. ..++||+.|..+
T Consensus 205 ~~~Pvl~~--~~lkpG~hV~aI 224 (346)
T PRK07589 205 TNATILTD--DMVEPGMHINAV 224 (346)
T ss_pred CCCceecH--HHcCCCcEEEec
Confidence 32233321 245788765544
|
|
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.6e-06 Score=73.81 Aligned_cols=89 Identities=17% Similarity=0.280 Sum_probs=65.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----cC--ceeccCchhhccCCCEEEEeeCc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IG--VKVLSDNNAVVEYSDVVVFSVKP 81 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-----~g--~~~~~~~~~~~~~aDiIil~v~~ 81 (274)
+..+|+|||+|.+|...+..+.... +...|.+| +|++++.+.+.+ .+ +....+.+++++ +|+|++|+|.
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~--~i~~v~v~-~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps 203 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVF--DLEEVRVY-DRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPS 203 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhC--CceEEEEE-CCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCC
Confidence 4568999999999999999997542 23478999 999999887765 24 345667788786 9999999987
Q ss_pred ccHHHHHHHhccccCCCCEEEEec
Q 024016 82 QVVKDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 82 ~~~~~v~~~i~~~l~~~~~vis~~ 105 (274)
.. .++.. ..+++|+.|.++.
T Consensus 204 ~~--P~~~~--~~l~~g~hV~~iG 223 (326)
T PRK06046 204 RK--PVVKA--EWIKEGTHINAIG 223 (326)
T ss_pred CC--cEecH--HHcCCCCEEEecC
Confidence 53 33211 2357888776653
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.1e-06 Score=71.20 Aligned_cols=92 Identities=12% Similarity=0.144 Sum_probs=65.1
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH--HHHHHcCcee-ccCchhhcc-----CCCEEEEee
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR--DAFESIGVKV-LSDNNAVVE-----YSDVVVFSV 79 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~--~~l~~~g~~~-~~~~~~~~~-----~aDiIil~v 79 (274)
|+++||||||+|++|..+...+.+... .++...+++++++. +...+.|+.. .++.+++++ +.|+||.++
T Consensus 2 m~klrVAIIGtG~IGt~hm~~l~~~~~---velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT 78 (302)
T PRK08300 2 MSKLKVAIIGSGNIGTDLMIKILRSEH---LEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDAT 78 (302)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHhcCCC---cEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECC
Confidence 567899999999999998888876432 26654448888642 3334478765 356666664 589999999
Q ss_pred CcccHHHHHHHhccccCCCCEEEEec
Q 024016 80 KPQVVKDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 80 ~~~~~~~v~~~i~~~l~~~~~vis~~ 105 (274)
+.....+...... ..|+.+|+.+
T Consensus 79 ~a~~H~e~a~~a~---eaGk~VID~s 101 (302)
T PRK08300 79 SAGAHVRHAAKLR---EAGIRAIDLT 101 (302)
T ss_pred CHHHHHHHHHHHH---HcCCeEEECC
Confidence 9888777766554 4567777654
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.30 E-value=8.3e-06 Score=67.63 Aligned_cols=87 Identities=17% Similarity=0.342 Sum_probs=64.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--cCceec---cCch----hh-ccCCCEEEEeeC
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--IGVKVL---SDNN----AV-VEYSDVVVFSVK 80 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~--~g~~~~---~~~~----~~-~~~aDiIil~v~ 80 (274)
|+|.|||+|.+|..+|+.|.+.|| +|.+. +++++++++..+ .+..+. .+.. ++ ++++|+++.++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~----~Vv~I-d~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~ 75 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH----NVVLI-DRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATG 75 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCC----ceEEE-EcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeC
Confidence 689999999999999999999999 99999 999999888444 443321 2222 22 568999999999
Q ss_pred cccHHHHHHHhccc-cCCCCEEE
Q 024016 81 PQVVKDVAMQIRPL-LSRKKLLV 102 (274)
Q Consensus 81 ~~~~~~v~~~i~~~-l~~~~~vi 102 (274)
.+....++-.+... +....++.
T Consensus 76 ~d~~N~i~~~la~~~~gv~~via 98 (225)
T COG0569 76 NDEVNSVLALLALKEFGVPRVIA 98 (225)
T ss_pred CCHHHHHHHHHHHHhcCCCcEEE
Confidence 88888777666533 43333444
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=98.30 E-value=5.5e-06 Score=72.65 Aligned_cols=88 Identities=14% Similarity=0.236 Sum_probs=65.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHh-CCCCCCCcEEEEeCCCHHHHHHHHH-----cCce--eccCchhhccCCCEEEEeeC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAK-SGVLPPDRICTAVHSNLKRRDAFES-----IGVK--VLSDNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~-~g~~~~~~v~v~~~r~~~~~~~l~~-----~g~~--~~~~~~~~~~~aDiIil~v~ 80 (274)
+..+++|||+|.+|...+..|.. .+. .+|++| +|++++++.+.+ .|+. ..++..+++.++|+|+.|||
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i---~~v~V~-~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~ 203 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDI---RSARIW-ARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTP 203 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCc---cEEEEE-CCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecC
Confidence 34689999999999999999974 443 479999 999999888765 2543 35677888899999999998
Q ss_pred cccHHHHHHHhccccCCCCEEEEe
Q 024016 81 PQVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 81 ~~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
... .++. ...+++|+.+..+
T Consensus 204 s~~--p~i~--~~~l~~g~~i~~v 223 (326)
T TIGR02992 204 SET--PILH--AEWLEPGQHVTAM 223 (326)
T ss_pred CCC--cEec--HHHcCCCcEEEee
Confidence 643 2221 1235788776655
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=6.2e-06 Score=74.18 Aligned_cols=89 Identities=13% Similarity=0.170 Sum_probs=69.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v 87 (274)
...++|+|+|+|.+|..++..+...|. +|+++ ++++.+.......|..+. +..++++.+|+||.|+.... +
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga----~ViV~-d~dp~ra~~A~~~G~~v~-~l~eal~~aDVVI~aTG~~~---v 280 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGA----RVIVT-EVDPICALQAAMDGFRVM-TMEEAAELGDIFVTATGNKD---V 280 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-cCCchhhHHHHhcCCEec-CHHHHHhCCCEEEECCCCHH---H
Confidence 356799999999999999999999998 99999 999988766555677653 56788889999999985432 2
Q ss_pred HH-HhccccCCCCEEEEec
Q 024016 88 AM-QIRPLLSRKKLLVSVA 105 (274)
Q Consensus 88 ~~-~i~~~l~~~~~vis~~ 105 (274)
+. +....+++|.++++..
T Consensus 281 I~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 281 ITAEHMEAMKDGAILANIG 299 (425)
T ss_pred HHHHHHhcCCCCCEEEEcC
Confidence 32 3444567888888653
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.3e-06 Score=72.15 Aligned_cols=67 Identities=19% Similarity=0.289 Sum_probs=49.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH----HHHc-----CceeccCchhhccCCCEEEEeeC
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FESI-----GVKVLSDNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~----l~~~-----g~~~~~~~~~~~~~aDiIil~v~ 80 (274)
|||+|||+|.+|.+++..|...|.. .+|.++ |+++++++. +... ...+..+..+.+++||+||+|.+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~--~ev~l~-D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~ 76 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLA--SEIVLV-DINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAG 76 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC--CEEEEE-ECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccC
Confidence 5899999999999999999998842 279999 999876653 2211 11222234466899999999985
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.27 E-value=8.3e-06 Score=71.07 Aligned_cols=97 Identities=14% Similarity=0.242 Sum_probs=64.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH----H-----cCceeccCchhhccCCCEEEEee
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S-----IGVKVLSDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~----~-----~g~~~~~~~~~~~~~aDiIil~v 79 (274)
..+||+|||+|++|++++..|...|.. .++.++ |+++++++... . ....+..+..+.+++||+||++-
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~--~el~L~-D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIita 81 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIA--DELVII-DINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITA 81 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCC--CEEEEE-eCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEec
Confidence 447999999999999999999988873 379999 99877654332 1 12344445556789999999976
Q ss_pred --C--ccc------------HHHHHHHhccccCCCCEEEEecCCCC
Q 024016 80 --K--PQV------------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 80 --~--~~~------------~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
| |.. +++++..+..+ .++..++..+++..
T Consensus 82 g~~~k~g~~R~dll~~N~~i~~~i~~~i~~~-~~~~~vivvsNP~d 126 (315)
T PRK00066 82 GAPQKPGETRLDLVEKNLKIFKSIVGEVMAS-GFDGIFLVASNPVD 126 (315)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCcHH
Confidence 2 211 33344444443 35666776666544
|
|
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.1e-06 Score=74.84 Aligned_cols=92 Identities=21% Similarity=0.259 Sum_probs=58.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH---c-C--ceeccCchhhccCCCEEEEeeCcc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES---I-G--VKVLSDNNAVVEYSDVVVFSVKPQ 82 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~---~-g--~~~~~~~~~~~~~aDiIil~v~~~ 82 (274)
+..+++|||+|..|..-+..+...- +..+|.+| +|++++++++.+ . + +..+++.++++++||+|+.|++..
T Consensus 127 ~~~~l~viGaG~QA~~~~~a~~~~~--~i~~v~v~-~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~ 203 (313)
T PF02423_consen 127 DARTLGVIGAGVQARWHLRALAAVR--PIKEVRVY-SRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPST 203 (313)
T ss_dssp T--EEEEE--SHHHHHHHHHHHHHS----SEEEEE--SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----S
T ss_pred CCceEEEECCCHHHHHHHHHHHHhC--CceEEEEE-ccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCC
Confidence 3468999999999999999887642 34589999 999999988876 2 4 345788899999999999999866
Q ss_pred cHHHHHHHhccccCCCCEEEEec
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~~ 105 (274)
.-..++. ...++||+.|.++.
T Consensus 204 ~~~P~~~--~~~l~~g~hi~~iG 224 (313)
T PF02423_consen 204 TPAPVFD--AEWLKPGTHINAIG 224 (313)
T ss_dssp SEEESB---GGGS-TT-EEEE-S
T ss_pred CCCcccc--HHHcCCCcEEEEec
Confidence 5212222 13467887766653
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=98.25 E-value=8.5e-06 Score=72.89 Aligned_cols=100 Identities=14% Similarity=0.148 Sum_probs=74.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v 87 (274)
...++|+|+|+|.+|..+++.+...|. +|+++ ++++.+.......|..+. +..++++++|+||.++.... +
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga----~ViV~-d~dp~r~~~A~~~G~~v~-~leeal~~aDVVItaTG~~~---v 263 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGA----RVIVT-EVDPIRALEAAMDGFRVM-TMEEAAKIGDIFITATGNKD---V 263 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcC----EEEEE-eCChhhHHHHHhcCCEeC-CHHHHHhcCCEEEECCCCHH---H
Confidence 356799999999999999999999898 99999 999987766666787654 45678889999999886432 2
Q ss_pred HH-HhccccCCCCEEEEecCC---CCHHHHHHh
Q 024016 88 AM-QIRPLLSRKKLLVSVAAG---VKLKDLQEW 116 (274)
Q Consensus 88 ~~-~i~~~l~~~~~vis~~~g---~~~~~l~~~ 116 (274)
+. +....+++|.++++...+ +..+.+.+.
T Consensus 264 I~~~~~~~mK~GailiN~G~~~~eId~~aL~~~ 296 (406)
T TIGR00936 264 IRGEHFENMKDGAIVANIGHFDVEIDVKALEEL 296 (406)
T ss_pred HHHHHHhcCCCCcEEEEECCCCceeCHHHHHHH
Confidence 32 244457888888876432 444555443
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.2e-06 Score=71.48 Aligned_cols=93 Identities=12% Similarity=0.168 Sum_probs=64.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc----CceeccCchh-hccCCCEEEEeeCccc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI----GVKVLSDNNA-VVEYSDVVVFSVKPQV 83 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~----g~~~~~~~~~-~~~~aDiIil~v~~~~ 83 (274)
+.+++.|+|+|.+|.+++..|.+.|+ +|+++ +|++++.+.+.+. +.....+..+ ...++|+||.|+|...
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~----~v~v~-~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm 190 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADC----NVIIA-NRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGM 190 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCC
Confidence 35689999999999999999999998 99999 9999988777652 3211122222 2357999999998642
Q ss_pred HHHHHH-Hh-ccccCCCCEEEEecC
Q 024016 84 VKDVAM-QI-RPLLSRKKLLVSVAA 106 (274)
Q Consensus 84 ~~~v~~-~i-~~~l~~~~~vis~~~ 106 (274)
..++-. .+ ...++++.++++++-
T Consensus 191 ~~~~~~~~~~~~~l~~~~~v~D~~y 215 (270)
T TIGR00507 191 SGNIDEPPVPAEKLKEGMVVYDMVY 215 (270)
T ss_pred CCCCCCCCCCHHHcCCCCEEEEecc
Confidence 211100 01 123578888888753
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=98.24 E-value=8.2e-06 Score=69.43 Aligned_cols=99 Identities=23% Similarity=0.276 Sum_probs=65.3
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhC-CCCCCCcEEEEeCCC-HHH----HHHHHH---cCceeccCchhhccCCCEEEEeeC
Q 024016 11 FILGFIG-AGKMAESIAKGVAKS-GVLPPDRICTAVHSN-LKR----RDAFES---IGVKVLSDNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 11 ~~IgiIG-~G~mG~~~a~~L~~~-g~~~~~~v~v~~~r~-~~~----~~~l~~---~g~~~~~~~~~~~~~aDiIil~v~ 80 (274)
+||+|+| +|+||..+++.+.+. ++ ++...++|. ++. ...+.. .|+.++++.+++..++|+||.+++
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~----elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~ 77 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGL----QLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTT 77 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCC----EEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCC
Confidence 6999999 699999999999864 44 555433753 222 112211 356666777776557899999999
Q ss_pred cccHHHHHHHhccccCCCCEEEEecCCCCHHHHHHh
Q 024016 81 PQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEW 116 (274)
Q Consensus 81 ~~~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~ 116 (274)
|+...+.+..... .|.-+|.-+.|.+.+..++.
T Consensus 78 p~~~~~~~~~al~---~g~~vVigttg~~~e~~~~l 110 (266)
T TIGR00036 78 PEGVLNHLKFALE---HGVRLVVGTTGFSEEDKQEL 110 (266)
T ss_pred hHHHHHHHHHHHH---CCCCEEEECCCCCHHHHHHH
Confidence 9988887766543 34445544457776655443
|
|
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.22 E-value=8.3e-06 Score=70.91 Aligned_cols=90 Identities=20% Similarity=0.230 Sum_probs=69.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----c-C--ceeccCchhhccCCCEEEEeeCc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----I-G--VKVLSDNNAVVEYSDVVVFSVKP 81 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~----~-g--~~~~~~~~~~~~~aDiIil~v~~ 81 (274)
....++|||+|.++......+.+-- +..+|.+| +|++++++++.. . + +..+.|.++++++||+|+.|||.
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v~--~~~~I~i~-~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s 205 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAVR--DIREIRVY-SRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPS 205 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhhC--CccEEEEE-cCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCC
Confidence 3468999999999999999887642 45689999 999999988874 2 3 45678889999999999999987
Q ss_pred ccHHHHHHHhccccCCCCEEEEec
Q 024016 82 QVVKDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 82 ~~~~~v~~~i~~~l~~~~~vis~~ 105 (274)
.. .++. ...++||+.|..+.
T Consensus 206 ~~--Pil~--~~~l~~G~hI~aiG 225 (330)
T COG2423 206 TE--PVLK--AEWLKPGTHINAIG 225 (330)
T ss_pred CC--Ceec--HhhcCCCcEEEecC
Confidence 76 3332 13467887655543
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=98.22 E-value=7e-06 Score=74.21 Aligned_cols=101 Identities=13% Similarity=0.178 Sum_probs=73.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v 87 (274)
...++|+|+|+|.+|..+++.+...|. +|+++ ++++.+.......|..+. +..++++.+|+||.++....+-
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga----~VIV~-e~dp~r~~eA~~~G~~vv-~leEal~~ADVVI~tTGt~~vI-- 323 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGA----RVIVT-EIDPICALQALMEGYQVL-TLEDVVSEADIFVTTTGNKDII-- 323 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCchhhHHHHhcCCeec-cHHHHHhhCCEEEECCCCccch--
Confidence 345799999999999999999998888 89999 999877655555677654 5677888999999987644321
Q ss_pred HHHhccccCCCCEEEEecC---CCCHHHHHHh
Q 024016 88 AMQIRPLLSRKKLLVSVAA---GVKLKDLQEW 116 (274)
Q Consensus 88 ~~~i~~~l~~~~~vis~~~---g~~~~~l~~~ 116 (274)
..+....++++.+++++.- -+....|.+.
T Consensus 324 ~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~ 355 (477)
T PLN02494 324 MVDHMRKMKNNAIVCNIGHFDNEIDMLGLETY 355 (477)
T ss_pred HHHHHhcCCCCCEEEEcCCCCCccCHHHHhhc
Confidence 1223334678889997754 2334555544
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.1e-06 Score=75.52 Aligned_cols=69 Identities=20% Similarity=0.301 Sum_probs=56.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cC-cee--ccCchhhccCCCEEEEeeCc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG-VKV--LSDNNAVVEYSDVVVFSVKP 81 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g-~~~--~~~~~~~~~~aDiIil~v~~ 81 (274)
..+||.|||+|.||..++.+|.+.|. .+|+++ +|+.++++.+.+ .+ ... .++..+.+.++|+||.||+.
T Consensus 180 ~~kkvlviGaG~~a~~va~~L~~~g~---~~I~V~-nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a 252 (414)
T PRK13940 180 SSKNVLIIGAGQTGELLFRHVTALAP---KQIMLA-NRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNV 252 (414)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHcCC---CEEEEE-CCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCC
Confidence 45799999999999999999999985 379999 999999988887 44 332 24446678899999999964
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.2e-05 Score=72.27 Aligned_cols=89 Identities=11% Similarity=0.144 Sum_probs=69.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v 87 (274)
....+|+|+|+|.+|..+++.+...|. +|+++ ++++.+.+.....|+... +..+.+..+|+||.|+.... +
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga----~ViV~-d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG~~~---~ 270 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA----RVIVT-EVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTGNKD---I 270 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-ECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCCCHH---H
Confidence 345799999999999999999999998 89999 999999888777888654 34677889999999985432 2
Q ss_pred HH-HhccccCCCCEEEEec
Q 024016 88 AM-QIRPLLSRKKLLVSVA 105 (274)
Q Consensus 88 ~~-~i~~~l~~~~~vis~~ 105 (274)
+. .....+++|.+++.+.
T Consensus 271 i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 271 ITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred HHHHHHhcCCCCcEEEEeC
Confidence 22 2344567888888664
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.3e-05 Score=70.54 Aligned_cols=89 Identities=15% Similarity=0.117 Sum_probs=61.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c------------------CceeccCchhhcc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I------------------GVKVLSDNNAVVE 70 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~------------------g~~~~~~~~~~~~ 70 (274)
++||||+|+|+||..+++.+.+... -++...++++++....+.+ . ++.+..+..++..
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d---~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~ 77 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPD---MELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLE 77 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCC---cEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhc
Confidence 3699999999999999998876432 2666554777765554433 2 2344456667777
Q ss_pred CCCEEEEeeCcccHHHHHHHhccccCCCCEEEEe
Q 024016 71 YSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 71 ~aDiIil~v~~~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
++|+||.|+++....+...... +.|+.+|+.
T Consensus 78 ~vDVVIdaT~~~~~~e~a~~~~---~aGk~VI~~ 108 (341)
T PRK04207 78 KADIVVDATPGGVGAKNKELYE---KAGVKAIFQ 108 (341)
T ss_pred cCCEEEECCCchhhHHHHHHHH---HCCCEEEEc
Confidence 8999999999988777765443 345566654
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=7.8e-06 Score=71.41 Aligned_cols=95 Identities=16% Similarity=0.323 Sum_probs=65.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH--H--HH----cC--cee--ccCchhhccCCCEEE
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA--F--ES----IG--VKV--LSDNNAVVEYSDVVV 76 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~--l--~~----~g--~~~--~~~~~~~~~~aDiIi 76 (274)
+.+||+|||+|.||..++..+...|. .++.++ |+++++++. + .. .+ ..+ .++. +.+++||+||
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~---~~l~L~-Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~-~~l~~ADiVV 78 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNL---GDVVLY-DVIKGVPQGKALDLKHFSTLVGSNINILGTNNY-EDIKDSDVVV 78 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCC---CeEEEE-ECCCccchhHHHHHhhhccccCCCeEEEeCCCH-HHhCCCCEEE
Confidence 45799999999999999999988884 279999 998765431 1 11 12 222 2343 4789999999
Q ss_pred Eee--C--c------------ccHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 77 FSV--K--P------------QVVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 77 l~v--~--~------------~~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
++. + + ..++++.+.+..+ .|+.+++..+++..
T Consensus 79 itag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~-~p~a~vivvsNP~d 126 (319)
T PTZ00117 79 ITAGVQRKEEMTREDLLTINGKIMKSVAESVKKY-CPNAFVICVTNPLD 126 (319)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecChHH
Confidence 998 3 2 2355666666665 46666776777654
|
|
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=9e-06 Score=71.63 Aligned_cols=90 Identities=20% Similarity=0.320 Sum_probs=64.9
Q ss_pred CCCCeEEEEcccHHH-HHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCce-eccCchhhccC--CCEEEEeeCcc
Q 024016 8 AESFILGFIGAGKMA-ESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVK-VLSDNNAVVEY--SDVVVFSVKPQ 82 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG-~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~-~~~~~~~~~~~--aDiIil~v~~~ 82 (274)
|+++||||||+|.++ ...+..+.+.+.. ..-+.++ +|++++++.+.+ .|+. .++|..+++++ .|+|++|+|++
T Consensus 1 ~~~irvgiiG~G~~~~~~~~~~~~~~~~~-~~~vav~-d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~ 78 (342)
T COG0673 1 MKMIRVGIIGAGGIAGKAHLPALAALGGG-LELVAVV-DRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNA 78 (342)
T ss_pred CCeeEEEEEcccHHHHHHhHHHHHhCCCc-eEEEEEe-cCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCCh
Confidence 457899999999665 5578788776520 0135666 999999988887 7774 77888888774 69999999988
Q ss_pred cHHHHHHHhccccCCCCEEE
Q 024016 83 VVKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vi 102 (274)
...++.... +..|+-|+
T Consensus 79 ~H~e~~~~A---L~aGkhVl 95 (342)
T COG0673 79 LHAELALAA---LEAGKHVL 95 (342)
T ss_pred hhHHHHHHH---HhcCCEEE
Confidence 766665332 34555555
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.1e-05 Score=70.98 Aligned_cols=88 Identities=15% Similarity=0.234 Sum_probs=64.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHh-CCCCCCCcEEEEeCCCHHHHHHHHH-----cCce--eccCchhhccCCCEEEEeeC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAK-SGVLPPDRICTAVHSNLKRRDAFES-----IGVK--VLSDNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~-~g~~~~~~v~v~~~r~~~~~~~l~~-----~g~~--~~~~~~~~~~~aDiIil~v~ 80 (274)
+.++|+|||+|.+|.+.+..+.. .+. .+|.+| +|++++++.+.+ .|+. ..++..+++.++|+|+.|+|
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~---~~V~v~-~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~ 206 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPI---REVRVW-ARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTP 206 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCC---CEEEEE-cCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeC
Confidence 34689999999999999988875 332 389999 999999988876 2444 35677888899999999998
Q ss_pred cccHHHHHHHhccccCCCCEEEEe
Q 024016 81 PQVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 81 ~~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
... .++.. ..+++++.+..+
T Consensus 207 s~~--p~i~~--~~l~~g~~v~~v 226 (330)
T PRK08291 207 SEE--PILKA--EWLHPGLHVTAM 226 (330)
T ss_pred CCC--cEecH--HHcCCCceEEee
Confidence 653 22221 124677665543
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.15 E-value=7.9e-06 Score=72.36 Aligned_cols=89 Identities=17% Similarity=0.195 Sum_probs=66.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC-CCCCCcEEEEeCCCHHHHHHHHHcC---cee-------ccCchhhccCCCEEEEe
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSG-VLPPDRICTAVHSNLKRRDAFESIG---VKV-------LSDNNAVVEYSDVVVFS 78 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g-~~~~~~v~v~~~r~~~~~~~l~~~g---~~~-------~~~~~~~~~~aDiIil~ 78 (274)
+++|-|||+|.+|+..|..|.++| + +|++- +|++++++++.... ++. .....+++++.|+||-|
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~----~V~iA-dRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~ 75 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDG----EVTIA-DRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINA 75 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCc----eEEEE-eCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEe
Confidence 468999999999999999999998 5 99999 99999998887642 321 11234678888999999
Q ss_pred eCcccHHHHHHHhccccCCCCEEEEecC
Q 024016 79 VKPQVVKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 79 v~~~~~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
.|+..-..+++.. ++.|.-+++++.
T Consensus 76 ~p~~~~~~i~ka~---i~~gv~yvDts~ 100 (389)
T COG1748 76 APPFVDLTILKAC---IKTGVDYVDTSY 100 (389)
T ss_pred CCchhhHHHHHHH---HHhCCCEEEccc
Confidence 9988766666432 234445665543
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.7e-05 Score=67.50 Aligned_cols=95 Identities=20% Similarity=0.303 Sum_probs=65.0
Q ss_pred EEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-------c--C--ceeccCchhhccCCCEEEEeeC
Q 024016 13 LGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------I--G--VKVLSDNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 13 IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-------~--g--~~~~~~~~~~~~~aDiIil~v~ 80 (274)
|+|||+ |.||..++..|...|.....+|.++ |+++++++.... . . ++..+|..+.+++||+||++.-
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~-D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~ 79 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLY-DIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAG 79 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEE-eCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCC
Confidence 689999 9999999999998882112389999 998866543221 1 2 2334555788999999999652
Q ss_pred c----------------ccHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 81 P----------------QVVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 81 ~----------------~~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
. +.++++.+++..+- |+..++..+++..
T Consensus 80 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~tNP~d 123 (263)
T cd00650 80 VGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVSNPVD 123 (263)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHH
Confidence 1 13555666666654 6777777777654
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.6e-06 Score=76.36 Aligned_cols=68 Identities=21% Similarity=0.337 Sum_probs=50.9
Q ss_pred CeEEEEcccHHHHHHHH--HHH----hCCCCCCCcEEEEeCCCHHHHHHHHH--------cC----ceeccCchhhccCC
Q 024016 11 FILGFIGAGKMAESIAK--GVA----KSGVLPPDRICTAVHSNLKRRDAFES--------IG----VKVLSDNNAVVEYS 72 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~--~L~----~~g~~~~~~v~v~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~a 72 (274)
+||+|||+|.||.+++. .++ .+|+ +|.+| |+++++++.... .+ +..++|..+++++|
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~----eV~L~-Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~A 75 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGS----TIALM-DIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGA 75 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCC----EEEEE-CCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCC
Confidence 58999999999998665 454 2344 89999 999988765432 11 33456767889999
Q ss_pred CEEEEeeCccc
Q 024016 73 DVVVFSVKPQV 83 (274)
Q Consensus 73 DiIil~v~~~~ 83 (274)
|+||.+++...
T Consensus 76 D~Vi~ai~~~~ 86 (423)
T cd05297 76 DFVINTIQVGG 86 (423)
T ss_pred CEEEEeeEecC
Confidence 99999998543
|
linked to 3D####ucture |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.7e-05 Score=59.70 Aligned_cols=93 Identities=12% Similarity=0.209 Sum_probs=72.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-----ccCchhhccCCCEEEEeeCccc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-----LSDNNAVVEYSDVVVFSVKPQV 83 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~-----~~~~~~~~~~aDiIil~v~~~~ 83 (274)
+.+||..||+| -|..++..|.+.|+ +|++. |.+++..+.+++.++.+ .+...+.-+++|+|..+=||..
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~----~ViaI-Di~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~e 89 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGF----DVIVI-DINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRD 89 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHH
Confidence 34789999999 99999999999999 99999 99999988888766543 2334566789999999998888
Q ss_pred HHHHHHHhccccCCCCEEEEecCC
Q 024016 84 VKDVAMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~~~g 107 (274)
+..-+-++...+..+-++..+++-
T Consensus 90 l~~~~~~la~~~~~~~~i~~l~~e 113 (134)
T PRK04148 90 LQPFILELAKKINVPLIIKPLSGE 113 (134)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCC
Confidence 777776777666665444444443
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.12 E-value=9.6e-06 Score=69.54 Aligned_cols=94 Identities=13% Similarity=0.215 Sum_probs=64.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cC----ceeccCchhhccCCCEEEEeeCcc
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG----VKVLSDNNAVVEYSDVVVFSVKPQ 82 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g----~~~~~~~~~~~~~aDiIil~v~~~ 82 (274)
...+++.|+|+|.+|.+++..|.+.|. .+|+++ +|+.++++.+.+ .+ +.+..+..+.+.++|+||-|+|..
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~---~~V~v~-~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g 196 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLDLGV---AEITIV-NRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAG 196 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCC---CEEEEE-eCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCC
Confidence 455789999999999999999999993 289999 999999888876 22 222112235567899999999855
Q ss_pred cHHHH-HHHh-ccccCCCCEEEEec
Q 024016 83 VVKDV-AMQI-RPLLSRKKLLVSVA 105 (274)
Q Consensus 83 ~~~~v-~~~i-~~~l~~~~~vis~~ 105 (274)
...+. ...+ ...++++.+++++.
T Consensus 197 ~~~~~~~~~~~~~~l~~~~~v~Div 221 (278)
T PRK00258 197 MSGELPLPPLPLSLLRPGTIVYDMI 221 (278)
T ss_pred CCCCCCCCCCCHHHcCCCCEEEEee
Confidence 32110 0000 12345667777764
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.6e-05 Score=69.42 Aligned_cols=95 Identities=18% Similarity=0.276 Sum_probs=63.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH--HH---HH---cC--ceec--cCchhhccCCCEEE
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD--AF---ES---IG--VKVL--SDNNAVVEYSDVVV 76 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~--~l---~~---~g--~~~~--~~~~~~~~~aDiIi 76 (274)
+.+||+|||+|+||+.++..+...|+ .+|.++ |+++++++ .+ .. .+ .++. ++. +.+++||+||
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl---~~i~Lv-Di~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI 79 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNL---GDVVLF-DIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVI 79 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC---CeEEEE-eCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEE
Confidence 44799999999999999999988885 268999 99887532 11 11 12 2332 343 6789999999
Q ss_pred EeeC----ccc-----------------HHHHHHHhccccCCCCEEEEecCCCC
Q 024016 77 FSVK----PQV-----------------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 77 l~v~----~~~-----------------~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
++.- +.. +.++.+++..+. |+..++..+++..
T Consensus 80 ~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~sNP~d 132 (321)
T PTZ00082 80 VTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVITNPLD 132 (321)
T ss_pred ECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHH
Confidence 9761 111 445555566554 5556666667654
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.2e-05 Score=65.15 Aligned_cols=91 Identities=19% Similarity=0.198 Sum_probs=62.7
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c----Cce--ec--cC---chhhccCCCE
Q 024016 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I----GVK--VL--SD---NNAVVEYSDV 74 (274)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~----g~~--~~--~~---~~~~~~~aDi 74 (274)
.+.+++.|+|. |.+|..+++.|.+.|+ +|+++ +|+.++.+.+.+ . +.. .. .+ ..+.++++|+
T Consensus 26 l~~~~vlVlGgtG~iG~~~a~~l~~~g~----~V~l~-~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~di 100 (194)
T cd01078 26 LKGKTAVVLGGTGPVGQRAAVLLAREGA----RVVLV-GRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADV 100 (194)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCE
Confidence 34579999995 9999999999999998 99999 999988877654 1 221 11 12 1356778999
Q ss_pred EEEeeCcccHHHHHHHhccccCCCCEEEEec
Q 024016 75 VVFSVKPQVVKDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 75 Iil~v~~~~~~~v~~~i~~~l~~~~~vis~~ 105 (274)
||.+++..... ........+++.+++++.
T Consensus 101 Vi~at~~g~~~--~~~~~~~~~~~~vv~D~~ 129 (194)
T cd01078 101 VFAAGAAGVEL--LEKLAWAPKPLAVAADVN 129 (194)
T ss_pred EEECCCCCcee--chhhhcccCceeEEEEcc
Confidence 99999865531 111112234566777764
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.07 E-value=3e-05 Score=67.47 Aligned_cols=95 Identities=16% Similarity=0.218 Sum_probs=63.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH----H-c---C---ceeccCchhhccCCCEEEEe
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S-I---G---VKVLSDNNAVVEYSDVVVFS 78 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~----~-~---g---~~~~~~~~~~~~~aDiIil~ 78 (274)
.+||+|||+|++|++++..|...|. ..++.++ |+++++++-.. . . . +....+.+ .+++||+||++
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~--~~el~Li-D~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~-~~~~adivvit 78 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGL--ADELVLV-DVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS-VTANSKVVIVT 78 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC--CCEEEEE-eCCccHHHHHHHHHHHhhccCCCCEEEECCCHH-HhCCCCEEEEC
Confidence 4699999999999999999998886 3479999 98876543222 1 1 1 22224444 58999999997
Q ss_pred e--C--ccc------------HHHHHHHhccccCCCCEEEEecCCCC
Q 024016 79 V--K--PQV------------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 79 v--~--~~~------------~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
. | |.. ++++.+.+..+ .|+.+++..+++..
T Consensus 79 aG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP~d 124 (312)
T cd05293 79 AGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVSNPVD 124 (312)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEccChHH
Confidence 6 2 221 33344445555 56677777777654
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.9e-05 Score=71.17 Aligned_cols=75 Identities=15% Similarity=0.281 Sum_probs=58.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceec-cC------chhh-ccCCCEEEEeeCc
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVL-SD------NNAV-VEYSDVVVFSVKP 81 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~-~~------~~~~-~~~aDiIil~v~~ 81 (274)
|+|.|+|+|.+|..+++.|.+.|+ +|+++ ++++++.+.+.+ .++.+. .+ ..++ +.++|.||++++.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~----~v~vi-d~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~ 75 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENN----DVTVI-DTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDS 75 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC----cEEEE-ECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCC
Confidence 589999999999999999999998 99999 999999888876 555432 11 1222 6789999999988
Q ss_pred ccHHHHHHH
Q 024016 82 QVVKDVAMQ 90 (274)
Q Consensus 82 ~~~~~v~~~ 90 (274)
+.....+..
T Consensus 76 ~~~n~~~~~ 84 (453)
T PRK09496 76 DETNMVACQ 84 (453)
T ss_pred hHHHHHHHH
Confidence 766554433
|
|
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.1e-05 Score=70.16 Aligned_cols=91 Identities=22% Similarity=0.288 Sum_probs=66.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----c-C---ceeccCchhhccCCCEEEEee
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----I-G---VKVLSDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-----~-g---~~~~~~~~~~~~~aDiIil~v 79 (274)
+..+++|||+|.++...+..+...-- +..+|.+| +|++++++.+.+ . | +.++++.++++++||||+.||
T Consensus 154 da~~l~iiG~G~QA~~~l~a~~~v~~-~i~~V~v~-~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT 231 (379)
T PRK06199 154 DSKVVGLLGPGVMGKTILAAFMAVCP-GIDTIKIK-GRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCN 231 (379)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcC-CccEEEEE-CCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEcc
Confidence 45789999999999999998876321 13589999 999999887765 1 2 456788999999999999999
Q ss_pred Cccc----HHHHHHHhccccCCCCEEEE
Q 024016 80 KPQV----VKDVAMQIRPLLSRKKLLVS 103 (274)
Q Consensus 80 ~~~~----~~~v~~~i~~~l~~~~~vis 103 (274)
+... ...++. ...++||+.|+.
T Consensus 232 ~s~~~~~s~~Pv~~--~~~lkpG~hv~~ 257 (379)
T PRK06199 232 SGETGDPSTYPYVK--REWVKPGAFLLM 257 (379)
T ss_pred CCCCCCCCcCcEec--HHHcCCCcEEec
Confidence 6422 223332 124578876654
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.2e-05 Score=70.04 Aligned_cols=91 Identities=16% Similarity=0.221 Sum_probs=64.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceec------cCchhhccCCCEEEEeeCc-
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVL------SDNNAVVEYSDVVVFSVKP- 81 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~------~~~~~~~~~aDiIil~v~~- 81 (274)
..+|.|||+|.+|...++.+...|. +|+++ ||++++.+.+.. .+..+. .+..+.+.++|+||.|++.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa----~V~v~-d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~ 241 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGA----TVTIL-DINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIP 241 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCC----eEEEE-ECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccC
Confidence 4579999999999999999999998 89999 999998887765 343221 1234567899999999731
Q ss_pred -ccHHHHH-HHhccccCCCCEEEEec
Q 024016 82 -QVVKDVA-MQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 82 -~~~~~v~-~~i~~~l~~~~~vis~~ 105 (274)
.....++ .+....++++.+||++.
T Consensus 242 g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 242 GAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred CCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 1111111 23334467888888765
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=98.02 E-value=9.1e-05 Score=65.43 Aligned_cols=94 Identities=17% Similarity=0.254 Sum_probs=62.0
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cC-ce-----eccCchh-hccCCCEEEEeeC
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG-VK-----VLSDNNA-VVEYSDVVVFSVK 80 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g-~~-----~~~~~~~-~~~~aDiIil~v~ 80 (274)
++||+|||+ |.+|..+++.|.+... .++....+|. +..+.+.+ .+ .. ...+..+ ...++|+||+|+|
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~---~elv~v~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP 77 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPE---VEIVAVTSRS-SAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALP 77 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCC---ceEEEEECcc-ccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCC
Confidence 479999997 9999999999987632 2665442543 22222221 11 11 1222222 3467999999999
Q ss_pred cccHHHHHHHhccccCCCCEEEEecCCCCH
Q 024016 81 PQVVKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (274)
Q Consensus 81 ~~~~~~v~~~i~~~l~~~~~vis~~~g~~~ 110 (274)
.+...++...+. ..|+.||+.++....
T Consensus 78 ~~~~~~~v~~a~---~aG~~VID~S~~fR~ 104 (343)
T PRK00436 78 HGVSMDLAPQLL---EAGVKVIDLSADFRL 104 (343)
T ss_pred cHHHHHHHHHHH---hCCCEEEECCcccCC
Confidence 998888887764 367899999887655
|
|
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.4e-05 Score=65.27 Aligned_cols=88 Identities=14% Similarity=0.205 Sum_probs=60.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH--HHHHHcCcee-ccCchhhcc--CCCEEEEeeCcccHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR--DAFESIGVKV-LSDNNAVVE--YSDVVVFSVKPQVVK 85 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~--~~l~~~g~~~-~~~~~~~~~--~aDiIil~v~~~~~~ 85 (274)
+||||||+|+||..++..+.+... .++...+++++++. +...+.|+.. .++.+++++ +.|+||+|+|+....
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~---~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~ 78 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEH---LEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHA 78 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCC---cEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHH
Confidence 689999999999988888876432 15554338888653 3333478754 345666664 579999999998877
Q ss_pred HHHHHhccccCCCCEEEEe
Q 024016 86 DVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~ 104 (274)
+...... ..|+.+++.
T Consensus 79 e~a~~al---~aGk~VIde 94 (285)
T TIGR03215 79 RHARLLA---ELGKIVIDL 94 (285)
T ss_pred HHHHHHH---HcCCEEEEC
Confidence 7665543 356666643
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.98 E-value=5.1e-05 Score=65.87 Aligned_cols=94 Identities=15% Similarity=0.285 Sum_probs=63.1
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH----HHH----c---CceeccCchhhccCCCEEEEee-
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FES----I---GVKVLSDNNAVVEYSDVVVFSV- 79 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~----l~~----~---g~~~~~~~~~~~~~aDiIil~v- 79 (274)
||+|||+|++|+++|..|+..+.. .++.++ |.++++++. |.. . .+++..+..+.+++||+|+++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~--~elvL~-Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG 77 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLF--SEIVLI-DVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG 77 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCC--CEEEEE-eCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCC
Confidence 799999999999999999988863 379999 988765432 222 1 2334444567789999999986
Q ss_pred -C--cccH---H-----------HHHHHhccccCCCCEEEEecCCCC
Q 024016 80 -K--PQVV---K-----------DVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 80 -~--~~~~---~-----------~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
| |..- . ++.+.+..+ .|+.+++-.+++..
T Consensus 78 ~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~-~p~~i~ivvsNPvD 123 (307)
T cd05290 78 PSIDPGNTDDRLDLAQTNAKIIREIMGNITKV-TKEAVIILITNPLD 123 (307)
T ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEecCcHH
Confidence 2 3222 2 222334444 36667777777755
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00012 Score=53.85 Aligned_cols=89 Identities=19% Similarity=0.306 Sum_probs=60.7
Q ss_pred EEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec-cCc--h-----hhccCCCEEEEeeCcccH
Q 024016 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDN--N-----AVVEYSDVVVFSVKPQVV 84 (274)
Q Consensus 13 IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~-~~~--~-----~~~~~aDiIil~v~~~~~ 84 (274)
|-|+|+|.+|..+++.|.+.+. +|++. ++++++.+.+.+.|..+. .|. . .-++++|.++++++.+..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~----~vvvi-d~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~ 75 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGI----DVVVI-DRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEE 75 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS----EEEEE-ESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCC----EEEEE-ECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHH
Confidence 5689999999999999999776 89999 999999999998776542 221 1 125689999999987654
Q ss_pred HHHHHHhccccCCCCEEEEecC
Q 024016 85 KDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~~ 106 (274)
.-.+......+.+...++....
T Consensus 76 n~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 76 NLLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp HHHHHHHHHHHTTTSEEEEEES
T ss_pred HHHHHHHHHHHCCCCeEEEEEC
Confidence 4333222222335444554433
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=97.96 E-value=5.4e-05 Score=52.82 Aligned_cols=64 Identities=19% Similarity=0.326 Sum_probs=47.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCccc-HHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-VKD 86 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~-~~~ 86 (274)
...++++|+|+|.+|..++..|.+.+. .+|++| +| |++|.|++... +.+
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~---~~v~v~-~r--------------------------di~i~~~~~~~~~~~ 70 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLLADEGG---KKVVLC-DR--------------------------DILVTATPAGVPVLE 70 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC---CEEEEE-cC--------------------------CEEEEcCCCCCCchH
Confidence 345799999999999999999999843 289999 88 99999997543 322
Q ss_pred HHHHhccccCCCCEEEEe
Q 024016 87 VAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~ 104 (274)
- ....++++.+|+++
T Consensus 71 ~---~~~~~~~~~~v~~~ 85 (86)
T cd05191 71 E---ATAKINEGAVVIDL 85 (86)
T ss_pred H---HHHhcCCCCEEEec
Confidence 1 11234577787764
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.4e-05 Score=66.32 Aligned_cols=70 Identities=20% Similarity=0.231 Sum_probs=54.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c----C-cee--ccCchhhccCCCEEEEeeC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I----G-VKV--LSDNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~----g-~~~--~~~~~~~~~~aDiIil~v~ 80 (274)
+.++|.|||+|.+|++++..|.+.|. .+|+++ ||+.++++.+.+ . . ..+ ..+..+.+.++|+||-|+|
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~G~---~~I~I~-nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp 201 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGV---ERLTIF-DVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATP 201 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCC---CEEEEE-CCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCc
Confidence 44689999999999999999999986 379999 999999988875 1 1 222 1233345678999999987
Q ss_pred cc
Q 024016 81 PQ 82 (274)
Q Consensus 81 ~~ 82 (274)
..
T Consensus 202 ~G 203 (284)
T PRK12549 202 TG 203 (284)
T ss_pred CC
Confidence 54
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00013 Score=64.51 Aligned_cols=101 Identities=17% Similarity=0.287 Sum_probs=66.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEE-EEeCCCHHHHHHHHH-c----C---ceec-cCchhhccCCCEEEEee
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFES-I----G---VKVL-SDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~-v~~~r~~~~~~~l~~-~----g---~~~~-~~~~~~~~~aDiIil~v 79 (274)
+||+|||+ |.+|..+++.|.+.-. .++. ++ +++++.-+.+.+ . + ..+. .+..+..+++|+||+|+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~---~el~~l~-~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~al 76 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPE---VEITYLV-SSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLAL 76 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCC---ceEEEEe-ccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECC
Confidence 58999998 9999999999986522 2666 55 444322222221 1 1 1121 13345556899999999
Q ss_pred CcccHHHHHHHhccccCCCCEEEEecCCCCH---HHHHHhhC
Q 024016 80 KPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL---KDLQEWTG 118 (274)
Q Consensus 80 ~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~---~~l~~~~~ 118 (274)
|.....++...+. ..|+.||+.++.... +..++|++
T Consensus 77 P~~~s~~~~~~~~---~~G~~VIDlS~~fR~~~~~~y~~~y~ 115 (346)
T TIGR01850 77 PHGVSAELAPELL---AAGVKVIDLSADFRLKDPEVYEKWYG 115 (346)
T ss_pred CchHHHHHHHHHH---hCCCEEEeCChhhhcCChhhhHHhcC
Confidence 9998888887764 357889998776543 34555554
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00012 Score=64.72 Aligned_cols=84 Identities=19% Similarity=0.258 Sum_probs=57.9
Q ss_pred CCeEEEEcccHHHHH-HHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHHc-CceeccCchhhcc--CCCEEEEeeCcccH
Q 024016 10 SFILGFIGAGKMAES-IAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESI-GVKVLSDNNAVVE--YSDVVVFSVKPQVV 84 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~-~a~~L~~~-g~~~~~~v~v~~~r~~~~~~~l~~~-g~~~~~~~~~~~~--~aDiIil~v~~~~~ 84 (274)
++||||||+|.||.. .+..+.+. +. ++...++++++++. .+. +...++|..++++ +.|+|++|+|+...
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~~~----~l~av~d~~~~~~~--~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H 77 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTPGL----ELAAVSSSDATKVK--ADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTH 77 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCC----EEEEEECCCHHHHH--hhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHH
Confidence 479999999999984 45656543 34 66543399987654 233 5567788888885 57999999998876
Q ss_pred HHHHHHhccccCCCCEEE
Q 024016 85 KDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vi 102 (274)
.++..... ..|+-|+
T Consensus 78 ~~~~~~al---~aGkhVl 92 (346)
T PRK11579 78 FPLAKAAL---EAGKHVV 92 (346)
T ss_pred HHHHHHHH---HCCCeEE
Confidence 66654433 3445455
|
|
| >PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=3e-05 Score=69.53 Aligned_cols=101 Identities=20% Similarity=0.244 Sum_probs=69.9
Q ss_pred CeEEEEcccHHHHHH-HHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce---ec-c----------------Cchh--
Q 024016 11 FILGFIGAGKMAESI-AKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK---VL-S----------------DNNA-- 67 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~-a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~---~~-~----------------~~~~-- 67 (274)
|||.++|+|+||++. ...|.++|+ +|++. +++++..+.+.+.|.- +. . +..+
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~----~V~~v-d~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~ 75 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGF----EVTFV-DVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVI 75 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCC----eEEEE-ECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHH
Confidence 689999999999855 777777888 99999 9988888888775531 10 0 1111
Q ss_pred -hccCCCEEEEeeCcccHHHHHHHhccccC--------CCCEEEEecCCCCH-HHHHHh
Q 024016 68 -VVEYSDVVVFSVKPQVVKDVAMQIRPLLS--------RKKLLVSVAAGVKL-KDLQEW 116 (274)
Q Consensus 68 -~~~~aDiIil~v~~~~~~~v~~~i~~~l~--------~~~~vis~~~g~~~-~~l~~~ 116 (274)
.+..+|+|.+++++...+.+...+.+.+. +.-.|++|.++... +.+++.
T Consensus 76 ~~~~~~dlvt~~v~~~~~~s~~~~l~~~L~~R~~~~~~~~~~VlsceN~~~ng~~L~~~ 134 (381)
T PRK02318 76 EAIAEADLVTTAVGPNILPFIAPLIAKGLKKRKAQGNTKPLNIIACENMIRGTSFLKKH 134 (381)
T ss_pred HHhcCCCEEEeCCCcccchhHHHHHHHHHHHHHHcCCCCCCEEEecCChhhHHHHHHHH
Confidence 23478999999988877766666554332 23378899888775 344433
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.3e-05 Score=60.28 Aligned_cols=77 Identities=13% Similarity=0.218 Sum_probs=57.2
Q ss_pred CCCCCeEEEEcccHH-HHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHH
Q 024016 7 PAESFILGFIGAGKM-AESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (274)
Q Consensus 7 ~~~~~~IgiIG~G~m-G~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~ 85 (274)
....++|.|||.|.| |..+++.|.+.|. +|++. +|+.+ +..+.+.++|+||.|++...+
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~----~V~v~-~r~~~--------------~l~~~l~~aDiVIsat~~~~i- 100 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA----TVTVC-HSKTK--------------NLKEHTKQADIVIVAVGKPGL- 100 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC----EEEEE-ECCch--------------hHHHHHhhCCEEEEcCCCCce-
Confidence 345689999999997 8889999999997 89999 88742 345678899999999975432
Q ss_pred HHHHHhccccCCCCEEEEecCC
Q 024016 86 DVAMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~~g 107 (274)
+-.+ .++++.++|++..+
T Consensus 101 -i~~~---~~~~~~viIDla~p 118 (168)
T cd01080 101 -VKGD---MVKPGAVVIDVGIN 118 (168)
T ss_pred -ecHH---HccCCeEEEEccCC
Confidence 1112 24567788887544
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.3e-05 Score=70.38 Aligned_cols=71 Identities=23% Similarity=0.359 Sum_probs=55.1
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCcee--ccCchhhccCCCEEEEeeCccc
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKV--LSDNNAVVEYSDVVVFSVKPQV 83 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~--~~~~~~~~~~aDiIil~v~~~~ 83 (274)
.+..++++|+|+|.+|.+++..|.+.|+ +|+++ +|++++.+.+.+ .+... ..+..+ +.++|+||.|+|...
T Consensus 329 ~~~~k~vlIiGaGgiG~aia~~L~~~G~----~V~i~-~R~~~~~~~la~~~~~~~~~~~~~~~-l~~~DiVInatP~g~ 402 (477)
T PRK09310 329 PLNNQHVAIVGAGGAAKAIATTLARAGA----ELLIF-NRTKAHAEALASRCQGKAFPLESLPE-LHRIDIIINCLPPSV 402 (477)
T ss_pred CcCCCEEEEEcCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHHhccceechhHhcc-cCCCCEEEEcCCCCC
Confidence 3456799999999999999999999998 99999 999988887765 22221 122222 468999999998764
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.88 E-value=5.7e-05 Score=59.02 Aligned_cols=85 Identities=14% Similarity=0.254 Sum_probs=60.8
Q ss_pred CCCCCCCC--CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcC-ceeccC--chhhccCCCEE
Q 024016 1 MDAFPIPA--ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG-VKVLSD--NNAVVEYSDVV 75 (274)
Q Consensus 1 ~~~~~~~~--~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g-~~~~~~--~~~~~~~aDiI 75 (274)
|..+|... +.++|.|||.|.+|...++.|++.|+ +|+++ ++. ..+++.+.+ +.+... ..+.++++|+|
T Consensus 2 ~~~~P~~l~l~~~~vlVvGGG~va~rka~~Ll~~ga----~V~VI-sp~--~~~~l~~l~~i~~~~~~~~~~dl~~a~lV 74 (157)
T PRK06719 2 YNMYPLMFNLHNKVVVIIGGGKIAYRKASGLKDTGA----FVTVV-SPE--ICKEMKELPYITWKQKTFSNDDIKDAHLI 74 (157)
T ss_pred CcccceEEEcCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-cCc--cCHHHHhccCcEEEecccChhcCCCceEE
Confidence 44566654 45899999999999999999999999 99999 643 344444432 222111 12336789999
Q ss_pred EEeeCcccHHHHHHHhc
Q 024016 76 VFSVKPQVVKDVAMQIR 92 (274)
Q Consensus 76 il~v~~~~~~~v~~~i~ 92 (274)
|.++.++.+...+....
T Consensus 75 iaaT~d~e~N~~i~~~a 91 (157)
T PRK06719 75 YAATNQHAVNMMVKQAA 91 (157)
T ss_pred EECCCCHHHHHHHHHHH
Confidence 99999888877776554
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=97.87 E-value=6.4e-05 Score=65.21 Aligned_cols=91 Identities=23% Similarity=0.324 Sum_probs=60.5
Q ss_pred EEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH----HHH----c--Ccee--ccCchhhccCCCEEEEeeC
Q 024016 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FES----I--GVKV--LSDNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 13 IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~----l~~----~--g~~~--~~~~~~~~~~aDiIil~v~ 80 (274)
|+|||+|.||..++..+...|+. +|+++ |+++++.+. +.. . ..++ ..+ .+.+++||+||++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~---eV~L~-Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d-~~~l~dADiVIit~g 75 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELG---DVVLL-DIVEGLPQGKALDISQAAPILGSDTKVTGTND-YEDIAGSDVVVITAG 75 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCc---EEEEE-eCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCC-HHHhCCCCEEEEecC
Confidence 68999999999999999888752 89999 998765421 111 1 1222 234 456899999999872
Q ss_pred -c---c------------cHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 81 -P---Q------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 81 -~---~------------~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
| . .++++++++.+.. |+.++|..+++..
T Consensus 76 ~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~-p~~~iIv~sNP~d 119 (300)
T cd01339 76 IPRKPGMSRDDLLGTNAKIVKEVAENIKKYA-PNAIVIVVTNPLD 119 (300)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHH
Confidence 1 1 1445556666655 5556666666654
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=8.2e-05 Score=65.05 Aligned_cols=101 Identities=16% Similarity=0.228 Sum_probs=66.4
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCC---CCcEEEEeCCCHH--HHH----HHHH------cCceeccCchhhccCC
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLP---PDRICTAVHSNLK--RRD----AFES------IGVKVLSDNNAVVEYS 72 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~---~~~v~v~~~r~~~--~~~----~l~~------~g~~~~~~~~~~~~~a 72 (274)
+.+||+|||+ |++|++++..|...+... +.++.++ |+++. +++ ++.. ....+..+..+.+++|
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~Li-Di~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~da 81 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLL-EIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDA 81 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEE-ecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCC
Confidence 5579999998 999999999998877531 1268888 88542 221 2221 1234445566778999
Q ss_pred CEEEEeeC----cc------------cHHHHHHHhccccCCCCEEEEecCCCCH
Q 024016 73 DVVVFSVK----PQ------------VVKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (274)
Q Consensus 73 DiIil~v~----~~------------~~~~v~~~i~~~l~~~~~vis~~~g~~~ 110 (274)
|+||++-- +. .++++.++|..+.+++.+++-.++++..
T Consensus 82 DiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv 135 (326)
T PRK05442 82 DVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANT 135 (326)
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHH
Confidence 99999752 22 1344455666655567777777777654
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00015 Score=64.04 Aligned_cols=96 Identities=18% Similarity=0.310 Sum_probs=63.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH----H----cC-ceecc-CchhhccCCCEEEEee-
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S----IG-VKVLS-DNNAVVEYSDVVVFSV- 79 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~----~----~g-~~~~~-~~~~~~~~aDiIil~v- 79 (274)
+||+|||+|++|++++..|...+.. .++.++ |+++++++..+ . .+ ..+.. ...+.+++||+||++-
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~--~el~Li-Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~~~daDiVVitAG 114 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLA--DELALV-DVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAVTAGSDLCIVTAG 114 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCC--CEEEEE-eCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHHhCCCCEEEECCC
Confidence 6999999999999999999988863 379999 99876543222 1 11 33432 2334589999999985
Q ss_pred -C--ccc------------HHHHHHHhccccCCCCEEEEecCCCCH
Q 024016 80 -K--PQV------------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (274)
Q Consensus 80 -~--~~~------------~~~v~~~i~~~l~~~~~vis~~~g~~~ 110 (274)
| |.. ++++...+..+ .|+.++|..+++...
T Consensus 115 ~~~k~g~tR~dll~~N~~I~~~i~~~I~~~-~p~~ivivvtNPvdv 159 (350)
T PLN02602 115 ARQIPGESRLNLLQRNVALFRKIIPELAKY-SPDTILLIVSNPVDV 159 (350)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCchHH
Confidence 2 221 22333445544 466677777776653
|
|
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00012 Score=66.47 Aligned_cols=68 Identities=18% Similarity=0.269 Sum_probs=47.5
Q ss_pred CeEEEEcccHHHHHHHH--HHH-hCCCCCCCcEEEEeCCCHHHHHHHHH--------cC----ceeccCchhhccCCCEE
Q 024016 11 FILGFIGAGKMAESIAK--GVA-KSGVLPPDRICTAVHSNLKRRDAFES--------IG----VKVLSDNNAVVEYSDVV 75 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~--~L~-~~g~~~~~~v~v~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~aDiI 75 (274)
+||+|||+|.||.+.+. .+. ..+. ...+|.++ |+++++++.... .+ +..++|..+++++||+|
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l-~~~evvLv-Did~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfV 79 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPAL-RDAEIALM-DIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYV 79 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccC-CCCEEEEE-CCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEE
Confidence 69999999999966655 554 2222 33389999 999987663211 22 23345657889999999
Q ss_pred EEeeC
Q 024016 76 VFSVK 80 (274)
Q Consensus 76 il~v~ 80 (274)
|.+..
T Consensus 80 v~ti~ 84 (431)
T PRK15076 80 INAIQ 84 (431)
T ss_pred eEeee
Confidence 99984
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=97.83 E-value=7.7e-05 Score=64.65 Aligned_cols=93 Identities=15% Similarity=0.279 Sum_probs=62.8
Q ss_pred EEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-------c-C-ceec-cCchhhccCCCEEEEeeC--
Q 024016 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------I-G-VKVL-SDNNAVVEYSDVVVFSVK-- 80 (274)
Q Consensus 13 IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-------~-g-~~~~-~~~~~~~~~aDiIil~v~-- 80 (274)
|+|||+|.+|++++..|+..|.. .+++++ |+++++++.... . . .++. .+..+.+++||+||++..
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~--~el~l~-D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIitag~p 77 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLA--SELVLV-DVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGAP 77 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCC--CEEEEE-eCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcCCCC
Confidence 68999999999999999988852 279999 998877654432 1 1 1221 222567899999999973
Q ss_pred c--c------------cHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 81 P--Q------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 81 ~--~------------~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
. . .++++...+..+- |+..++..+++..
T Consensus 78 ~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~sNP~d 119 (300)
T cd00300 78 RKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVSNPVD 119 (300)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccChHH
Confidence 2 1 1344445555554 6667777766654
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00034 Score=61.56 Aligned_cols=99 Identities=13% Similarity=0.211 Sum_probs=70.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCC--CCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCc----
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSG--VLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKP---- 81 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g--~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~---- 81 (274)
+..||||||+ .||...+..+.+.. + ++...++|++++++++.+ .|+..++|.++++++.|++++++|.
T Consensus 2 ~~~rVgViG~-~~G~~h~~al~~~~~~~----eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~ 76 (343)
T TIGR01761 2 DVQSVVVCGT-RFGQFYLAAFAAAPERF----ELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVG 76 (343)
T ss_pred CCcEEEEEeH-HHHHHHHHHHHhCCCCc----EEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCC
Confidence 3579999999 68999999987753 4 665444999999988887 7887888999999888888888753
Q ss_pred ccHHHHHHHhccccCCCCEEEEecCCCCHHHHHHh
Q 024016 82 QVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEW 116 (274)
Q Consensus 82 ~~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~ 116 (274)
..-.++..+. +..|+-|+ +-+++..++.++.
T Consensus 77 ~~H~e~a~~a---L~aGkHVL-~EKPla~~Ea~el 107 (343)
T TIGR01761 77 GQGSALARAL---LARGIHVL-QEHPLHPRDIQDL 107 (343)
T ss_pred ccHHHHHHHH---HhCCCeEE-EcCCCCHHHHHHH
Confidence 3444544443 34555555 4466665544443
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00016 Score=58.82 Aligned_cols=35 Identities=17% Similarity=0.411 Sum_probs=30.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
+..||+|+|+|.||+.++..|...|+ .+++++ |++
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gv---g~i~lv-D~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGI---GKLILV-DFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCC---CEEEEE-CCC
Confidence 34689999999999999999999997 258888 777
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0001 Score=54.46 Aligned_cols=94 Identities=18% Similarity=0.315 Sum_probs=64.4
Q ss_pred CeEEEEc----ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHH
Q 024016 11 FILGFIG----AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (274)
Q Consensus 11 ~~IgiIG----~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~ 86 (274)
++|+||| -+.+|..+.++|.++|+ +|+.. +...... .|...+.+..|.-...|++++++|++.+.+
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~----~v~~V-np~~~~i-----~G~~~y~sl~e~p~~iDlavv~~~~~~~~~ 70 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGY----EVYPV-NPKGGEI-----LGIKCYPSLAEIPEPIDLAVVCVPPDKVPE 70 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-----EEEEE-STTCSEE-----TTEE-BSSGGGCSST-SEEEE-S-HHHHHH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCC----EEEEE-CCCceEE-----CcEEeeccccCCCCCCCEEEEEcCHHHHHH
Confidence 4799999 79999999999999998 99988 7665332 578888888874478999999999999999
Q ss_pred HHHHhccccCCCCEEEEecCCCCHHHHHHhh
Q 024016 87 VAMQIRPLLSRKKLLVSVAAGVKLKDLQEWT 117 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~ 117 (274)
+++++... ..+.+++. .+...+++.+..
T Consensus 71 ~v~~~~~~-g~~~v~~~--~g~~~~~~~~~a 98 (116)
T PF13380_consen 71 IVDEAAAL-GVKAVWLQ--PGAESEELIEAA 98 (116)
T ss_dssp HHHHHHHH-T-SEEEE---TTS--HHHHHHH
T ss_pred HHHHHHHc-CCCEEEEE--cchHHHHHHHHH
Confidence 99987654 34444442 344444554443
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00013 Score=63.64 Aligned_cols=100 Identities=15% Similarity=0.221 Sum_probs=61.8
Q ss_pred CCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH--HHHH--cCcee--ccCc---hhhccCCCEE
Q 024016 6 IPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD--AFES--IGVKV--LSDN---NAVVEYSDVV 75 (274)
Q Consensus 6 ~~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~--~l~~--~g~~~--~~~~---~~~~~~aDiI 75 (274)
--.++.||+|||+ |++|+.++..|...+. ..++.++ |++....+ ++.. ....+ .+++ .+.++++|+|
T Consensus 4 ~~~~~~KI~IiGaaG~VGs~~a~~l~~~~~--~~elvL~-Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvV 80 (321)
T PTZ00325 4 SALKMFKVAVLGAAGGIGQPLSLLLKQNPH--VSELSLY-DIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLV 80 (321)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHhcCCC--CCEEEEE-ecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEE
Confidence 3345679999999 9999999999986664 2379999 98432222 2222 11222 2221 5778999999
Q ss_pred EEee--C--cc------------cHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 76 VFSV--K--PQ------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 76 il~v--~--~~------------~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
+++. | +. .++++++.+..+ .++.+++-.++++.
T Consensus 81 VitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~-~~~~iviv~SNPvd 129 (321)
T PTZ00325 81 LICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASS-APKAIVGIVSNPVN 129 (321)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHH
Confidence 9987 2 21 122333344443 45667776667654
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00017 Score=58.85 Aligned_cols=79 Identities=15% Similarity=0.138 Sum_probs=58.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHHcC-ceeccC--chhhccCCCEEEEeeCcccH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIG-VKVLSD--NNAVVEYSDVVVFSVKPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-~~~~~l~~~g-~~~~~~--~~~~~~~aDiIil~v~~~~~ 84 (274)
+.++|.|||.|.+|...++.|++.|. +|+++ +++. +....+.+.+ +..... ..+.+.++|+||.|+.++.+
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga----~V~VI-s~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~el 83 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGA----HIVVI-SPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPRV 83 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC----eEEEE-cCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHHH
Confidence 46799999999999999999999998 99999 8764 2334444433 333211 12346789999999998888
Q ss_pred HHHHHHhc
Q 024016 85 KDVAMQIR 92 (274)
Q Consensus 85 ~~v~~~i~ 92 (274)
...+.+..
T Consensus 84 N~~i~~~a 91 (202)
T PRK06718 84 NEQVKEDL 91 (202)
T ss_pred HHHHHHHH
Confidence 77665554
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00011 Score=63.10 Aligned_cols=70 Identities=21% Similarity=0.220 Sum_probs=53.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cC----ceecc---CchhhccCCCEEEEeeC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG----VKVLS---DNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g----~~~~~---~~~~~~~~aDiIil~v~ 80 (274)
+.+++.|||+|-+|++++..|.+.|. .+|+++ +|++++++.+.+ .+ +.... +..+.+.++|+||-|+|
T Consensus 124 ~~k~vlvlGaGGaarai~~aL~~~G~---~~i~I~-nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp 199 (282)
T TIGR01809 124 AGFRGLVIGAGGTSRAAVYALASLGV---TDITVI-NRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVP 199 (282)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHcCC---CeEEEE-eCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCC
Confidence 45689999999999999999999986 379999 999999998876 21 11111 12244567899999998
Q ss_pred cc
Q 024016 81 PQ 82 (274)
Q Consensus 81 ~~ 82 (274)
..
T Consensus 200 ~g 201 (282)
T TIGR01809 200 AD 201 (282)
T ss_pred CC
Confidence 54
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00034 Score=66.48 Aligned_cols=89 Identities=12% Similarity=0.169 Sum_probs=65.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec-cCc--hh-----hccCCCEEEEeeCc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDN--NA-----VVEYSDVVVFSVKP 81 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~-~~~--~~-----~~~~aDiIil~v~~ 81 (274)
..+|-|+|+|++|..+++.|.+.|+ ++++. |+++++.+.+.+.|..+. .|. .+ -+++||.+++++++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~----~vvvI-D~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d 474 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM----RITVL-ERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNE 474 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC----CEEEE-ECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCC
Confidence 3589999999999999999999999 99999 999999999988776432 221 12 25689999999987
Q ss_pred ccHH-HHHHHhccccCCCCEEEEe
Q 024016 82 QVVK-DVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 82 ~~~~-~v~~~i~~~l~~~~~vis~ 104 (274)
+... .++..++. ..|+..++.-
T Consensus 475 ~~~n~~i~~~~r~-~~p~~~IiaR 497 (601)
T PRK03659 475 PEDTMKIVELCQQ-HFPHLHILAR 497 (601)
T ss_pred HHHHHHHHHHHHH-HCCCCeEEEE
Confidence 6543 44444443 3455455543
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00026 Score=63.06 Aligned_cols=100 Identities=15% Similarity=0.155 Sum_probs=67.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCC-CCcEEE----EeCCCHHHHHHHH----H------cCceeccCchhhccCCC
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLP-PDRICT----AVHSNLKRRDAFE----S------IGVKVLSDNNAVVEYSD 73 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~-~~~v~v----~~~r~~~~~~~l~----~------~g~~~~~~~~~~~~~aD 73 (274)
..||+|||+ |++|++++..|...+... ..+|.+ + |++.++++..+ . ..+.+..+..+.+++||
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~di-D~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaD 122 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGS-ERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDAD 122 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEecc-CccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCC
Confidence 369999999 999999999999888743 123444 4 77777654322 1 13444456667899999
Q ss_pred EEEEee--C--cc-c-----------HHHHHHHhccccCCCCEEEEecCCCCH
Q 024016 74 VVVFSV--K--PQ-V-----------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (274)
Q Consensus 74 iIil~v--~--~~-~-----------~~~v~~~i~~~l~~~~~vis~~~g~~~ 110 (274)
+||++- | |. . ++++...|..+.+|+.++|-+++++..
T Consensus 123 IVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv 175 (387)
T TIGR01757 123 WALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNT 175 (387)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHH
Confidence 999975 2 22 1 344445566655577777777776653
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00014 Score=63.08 Aligned_cols=96 Identities=17% Similarity=0.252 Sum_probs=62.9
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH--HHHHH--cCceec---c--CchhhccCCCEEEEee-
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR--DAFES--IGVKVL---S--DNNAVVEYSDVVVFSV- 79 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~--~~l~~--~g~~~~---~--~~~~~~~~aDiIil~v- 79 (274)
|||+|||+ |++|++++..|...+.. .++.++ |++..+. -+|.. ....+. . ++.+.+++||+||++.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~--~elvLi-Di~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG 77 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLV--SELALY-DIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAG 77 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCC--cEEEEE-ecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCC
Confidence 59999999 99999999999888862 378999 8872111 12222 112222 2 2257789999999986
Q ss_pred -C--ccc------------HHHHHHHhccccCCCCEEEEecCCCCH
Q 024016 80 -K--PQV------------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (274)
Q Consensus 80 -~--~~~------------~~~v~~~i~~~l~~~~~vis~~~g~~~ 110 (274)
| |.. ++++.+.+..+ .|+.+++..+++...
T Consensus 78 ~~~k~g~tR~dll~~N~~i~~~i~~~i~~~-~p~a~vivvtNPvDv 122 (310)
T cd01337 78 VPRKPGMTRDDLFNINAGIVRDLATAVAKA-CPKALILIISNPVNS 122 (310)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCchhh
Confidence 2 221 23333445554 577888888888754
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00011 Score=58.70 Aligned_cols=61 Identities=21% Similarity=0.357 Sum_probs=49.1
Q ss_pred EEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec----cC---chhhccCCCEEEEeeC
Q 024016 13 LGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL----SD---NNAVVEYSDVVVFSVK 80 (274)
Q Consensus 13 IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~----~~---~~~~~~~aDiIil~v~ 80 (274)
|.|+|+ |.+|..+++.|++.|+ +|++. .|++++.+. ..++++. .+ ..++++++|.||.+++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~----~V~~~-~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~ 69 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH----EVTAL-VRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAG 69 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS----EEEEE-ESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCH
T ss_pred eEEECCCChHHHHHHHHHHHCCC----EEEEE-ecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhh
Confidence 678985 9999999999999999 99999 999998876 4454432 12 2456779999999995
|
... |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00037 Score=60.92 Aligned_cols=101 Identities=15% Similarity=0.218 Sum_probs=65.3
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCC---CCcEEEEeCCCH--HHHH----HHHH------cCceeccCchhhccCC
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLP---PDRICTAVHSNL--KRRD----AFES------IGVKVLSDNNAVVEYS 72 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~---~~~v~v~~~r~~--~~~~----~l~~------~g~~~~~~~~~~~~~a 72 (274)
+..||+|||+ |++|++++..|...+... ..++.++ |+++ ++++ ++.. .+..+..+..+.+++|
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~-Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~da 80 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLL-DIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDV 80 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEE-ecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCC
Confidence 4469999998 999999999999887621 1168888 8854 2222 1221 1233434556778999
Q ss_pred CEEEEee--C--cc------------cHHHHHHHhccccCCCCEEEEecCCCCH
Q 024016 73 DVVVFSV--K--PQ------------VVKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (274)
Q Consensus 73 DiIil~v--~--~~------------~~~~v~~~i~~~l~~~~~vis~~~g~~~ 110 (274)
|+||++- | +. .++++..++..+-.|+.+++-.++++..
T Consensus 81 DvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv 134 (323)
T TIGR01759 81 DAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANT 134 (323)
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHH
Confidence 9999986 2 22 1344445566654447777777776653
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00029 Score=63.82 Aligned_cols=99 Identities=11% Similarity=0.143 Sum_probs=68.2
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhC-------CCCCCCcEEEEeCCCHHHHHHHH----H------cCceeccCchhhcc
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKS-------GVLPPDRICTAVHSNLKRRDAFE----S------IGVKVLSDNNAVVE 70 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~-------g~~~~~~v~v~~~r~~~~~~~l~----~------~g~~~~~~~~~~~~ 70 (274)
+..||+|||+ |++|.+++..|... +.. .++.++ |+++++++-.+ . ..+.+..+..+.++
T Consensus 99 ~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~--~eLvli-D~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~k 175 (444)
T PLN00112 99 KLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIA--LKLLGS-ERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQ 175 (444)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcc--cEEEEE-cCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhC
Confidence 3469999999 99999999999887 442 268888 99888764322 1 12344456678899
Q ss_pred CCCEEEEee--C--ccc------------HHHHHHHhccccCCCCEEEEecCCCCH
Q 024016 71 YSDVVVFSV--K--PQV------------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (274)
Q Consensus 71 ~aDiIil~v--~--~~~------------~~~v~~~i~~~l~~~~~vis~~~g~~~ 110 (274)
+||+||++- | |.. ++++.+.|..+..++.++|-++++...
T Consensus 176 daDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv 231 (444)
T PLN00112 176 DAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNT 231 (444)
T ss_pred cCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHH
Confidence 999999986 2 221 344445565544577777777776653
|
|
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00028 Score=62.38 Aligned_cols=77 Identities=17% Similarity=0.161 Sum_probs=52.8
Q ss_pred CeEEEEcccHHHHH-HHHHHHhC--CCCCCCcEEEEeCCCHHHHHHHHHcC-ceeccCchhhcc--CCCEEEEeeCcccH
Q 024016 11 FILGFIGAGKMAES-IAKGVAKS--GVLPPDRICTAVHSNLKRRDAFESIG-VKVLSDNNAVVE--YSDVVVFSVKPQVV 84 (274)
Q Consensus 11 ~~IgiIG~G~mG~~-~a~~L~~~--g~~~~~~v~v~~~r~~~~~~~l~~~g-~~~~~~~~~~~~--~aDiIil~v~~~~~ 84 (274)
.||||||+|.++.. .+..+... ++ ++..++++++++.+...+.+ +..++|.+++++ +.|+|++|+|+...
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~----~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H 77 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSW----HVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSH 77 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCE----EEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHH
Confidence 58999999998753 34545332 34 66543399986654333454 567778888886 57999999998876
Q ss_pred HHHHHHh
Q 024016 85 KDVAMQI 91 (274)
Q Consensus 85 ~~v~~~i 91 (274)
.++....
T Consensus 78 ~~~~~~a 84 (344)
T PRK10206 78 FEYAKRA 84 (344)
T ss_pred HHHHHHH
Confidence 6665543
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00016 Score=62.88 Aligned_cols=95 Identities=24% Similarity=0.309 Sum_probs=61.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCH--HHHHHHH--------HcC--cee--ccCchhhccCCCEE
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNL--KRRDAFE--------SIG--VKV--LSDNNAVVEYSDVV 75 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~--~~~~~l~--------~~g--~~~--~~~~~~~~~~aDiI 75 (274)
|||+|||+ |.+|..++..|...|+. .+|+++ +|++ ++++... ..+ ..+ ..+ .+.+.+||+|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~--~~v~lv-d~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~aDiV 76 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVV--KEINLI-SRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGSDIV 76 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCC--CEEEEE-ECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCCCEE
Confidence 69999998 99999999999999872 258898 8854 3331111 112 222 234 4568999999
Q ss_pred EEeeC--c--c-c-----------HHHHHHHhccccCCCCEEEEecCCCCH
Q 024016 76 VFSVK--P--Q-V-----------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (274)
Q Consensus 76 il~v~--~--~-~-----------~~~v~~~i~~~l~~~~~vis~~~g~~~ 110 (274)
|+|.. . . . ++++...+.... ++.++|-.+++++.
T Consensus 77 iitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~-~~~~viv~~npvd~ 126 (309)
T cd05294 77 IITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFA-PDTKILVVTNPVDV 126 (309)
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCchHH
Confidence 99983 1 1 1 334444555544 55566666676654
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=97.70 E-value=6.9e-05 Score=59.27 Aligned_cols=98 Identities=13% Similarity=0.174 Sum_probs=64.9
Q ss_pred CCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec-c-------------------
Q 024016 4 FPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-S------------------- 63 (274)
Q Consensus 4 ~~~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~-~------------------- 63 (274)
.+......||.|+|.|+.|..-+..+...|+ +++++ +.++++.+.+...+.... .
T Consensus 14 ~~~~~~p~~vvv~G~G~vg~gA~~~~~~lGa----~v~~~-d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 88 (168)
T PF01262_consen 14 GPGGVPPAKVVVTGAGRVGQGAAEIAKGLGA----EVVVP-DERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEH 88 (168)
T ss_dssp TTTEE-T-EEEEESTSHHHHHHHHHHHHTT-----EEEEE-ESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHH
T ss_pred CCCCCCCeEEEEECCCHHHHHHHHHHhHCCC----EEEec-cCCHHHHHhhhcccCceEEEcccccccccccchhhhhHH
Confidence 3444456799999999999999999999999 99999 999988887776443211 1
Q ss_pred ------CchhhccCCCEEEEee--CcccHHHHH-HHhccccCCCCEEEEecC
Q 024016 64 ------DNNAVVEYSDVVVFSV--KPQVVKDVA-MQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 64 ------~~~~~~~~aDiIil~v--~~~~~~~v~-~~i~~~l~~~~~vis~~~ 106 (274)
...+.+..+|+||.+. +....+.++ ++....++++.+|++++.
T Consensus 89 ~~~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~ 140 (168)
T PF01262_consen 89 PESYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISC 140 (168)
T ss_dssp CCHHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTG
T ss_pred HHHhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEe
Confidence 1234567899999865 444444444 233445679988888753
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00031 Score=69.73 Aligned_cols=80 Identities=21% Similarity=0.230 Sum_probs=58.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCC----------CCcEEEEeCCCHHHHHHHHH-c-Cc---ee-ccCchhhc---c
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLP----------PDRICTAVHSNLKRRDAFES-I-GV---KV-LSDNNAVV---E 70 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~----------~~~v~v~~~r~~~~~~~l~~-~-g~---~~-~~~~~~~~---~ 70 (274)
++||+|||+|.||+..+..|.+...+. ...|++. |+++++++++.+ . ++ .+ +.+..++. +
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~Va-D~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVA-SLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEE-CCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 569999999999999999998754211 0137888 999999888876 3 52 33 34544443 5
Q ss_pred CCCEEEEeeCcccHHHHHHH
Q 024016 71 YSDVVVFSVKPQVVKDVAMQ 90 (274)
Q Consensus 71 ~aDiIil~v~~~~~~~v~~~ 90 (274)
++|+|+.|+|+....++...
T Consensus 648 ~~DaVIsalP~~~H~~VAka 667 (1042)
T PLN02819 648 QVDVVISLLPASCHAVVAKA 667 (1042)
T ss_pred CCCEEEECCCchhhHHHHHH
Confidence 79999999998766666544
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00041 Score=65.41 Aligned_cols=89 Identities=9% Similarity=0.236 Sum_probs=63.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec-cCc--hh-----hccCCCEEEEeeCcc
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDN--NA-----VVEYSDVVVFSVKPQ 82 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~-~~~--~~-----~~~~aDiIil~v~~~ 82 (274)
-+|-|+|+|++|+.+++.|.+.|+ +++++ |+++++.+.+.+.|..+. .|. .+ -++++|.++++++++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~----~vvvI-d~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~ 492 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGI----PLVVI-ETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNG 492 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCC----CEEEE-ECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCCh
Confidence 478999999999999999999999 99999 999999999988776432 221 22 146899999999765
Q ss_pred cHH-HHHHHhccccCCCCEEEEec
Q 024016 83 VVK-DVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 83 ~~~-~v~~~i~~~l~~~~~vis~~ 105 (274)
.-. .+...+... .++..++.-.
T Consensus 493 ~~~~~iv~~~~~~-~~~~~iiar~ 515 (558)
T PRK10669 493 YEAGEIVASAREK-RPDIEIIARA 515 (558)
T ss_pred HHHHHHHHHHHHH-CCCCeEEEEE
Confidence 432 343334333 3555555443
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00021 Score=59.26 Aligned_cols=96 Identities=21% Similarity=0.300 Sum_probs=64.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC----HHHH-------HHHHH-cCc-eeccCchhhccCCCE
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN----LKRR-------DAFES-IGV-KVLSDNNAVVEYSDV 74 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~----~~~~-------~~l~~-~g~-~~~~~~~~~~~~aDi 74 (274)
.+.+||.|+|+|.+|.+++..|.+.|. +..+|+++ ||+ .++. +.+.+ .+. ....+..+.++++|+
T Consensus 23 l~~~rvlvlGAGgAg~aiA~~L~~~G~-~~~~i~iv-dr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dv 100 (226)
T cd05311 23 IEEVKIVINGAGAAGIAIARLLLAAGA-KPENIVVV-DSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADV 100 (226)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHcCc-CcceEEEE-eCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCE
Confidence 456799999999999999999999986 12269999 998 4443 22332 221 111245567788999
Q ss_pred EEEeeCcccH-HHHHHHhccccCCCCEEEEecCCCC
Q 024016 75 VVFSVKPQVV-KDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 75 Iil~v~~~~~-~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
||-++++..+ +++++.+ .++.++..++++.+
T Consensus 101 lIgaT~~G~~~~~~l~~m----~~~~ivf~lsnP~~ 132 (226)
T cd05311 101 FIGVSRPGVVKKEMIKKM----AKDPIVFALANPVP 132 (226)
T ss_pred EEeCCCCCCCCHHHHHhh----CCCCEEEEeCCCCC
Confidence 9999986554 3444443 36677777776654
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00018 Score=62.70 Aligned_cols=95 Identities=19% Similarity=0.239 Sum_probs=60.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHh-CCCCCCCcEEEEeCCCHHHH---HHHHHcC--cee----ccCchhhccCCCEEEEee
Q 024016 11 FILGFIGA-GKMAESIAKGVAK-SGVLPPDRICTAVHSNLKRR---DAFESIG--VKV----LSDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~-~g~~~~~~v~v~~~r~~~~~---~~l~~~g--~~~----~~~~~~~~~~aDiIil~v 79 (274)
|||+|||+ |.+|++++..|.. .+. ..++.++ +|++... -.+...+ ..+ .++..+.++++|+||+|.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~--~~el~L~-d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIita 77 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPA--GSELSLY-DIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISA 77 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCC--ccEEEEE-ecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcC
Confidence 69999999 9999999988854 232 1278888 8875421 1222212 222 234457788999999997
Q ss_pred C----cc------------cHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 80 K----PQ------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 80 ~----~~------------~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
- +. .++++++.+..+ .++.+++..+++..
T Consensus 78 G~~~~~~~~R~dll~~N~~i~~~ii~~i~~~-~~~~ivivvsNP~D 122 (312)
T PRK05086 78 GVARKPGMDRSDLFNVNAGIVKNLVEKVAKT-CPKACIGIITNPVN 122 (312)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCchH
Confidence 2 22 234444555554 56778887778764
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00033 Score=61.26 Aligned_cols=99 Identities=14% Similarity=0.160 Sum_probs=63.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCC---CCcEEEEeCCCHHH--HH----HHHH------cCceeccCchhhccCCCE
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLP---PDRICTAVHSNLKR--RD----AFES------IGVKVLSDNNAVVEYSDV 74 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~---~~~v~v~~~r~~~~--~~----~l~~------~g~~~~~~~~~~~~~aDi 74 (274)
+||+|||+ |++|++++..|...|... ..++.++ |+++.. ++ ++.. ..+.+..+..+.+++||+
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~-Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDi 81 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLL-ELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADW 81 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEE-ecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCE
Confidence 59999999 999999999999877631 1168888 884322 21 1221 123444455677899999
Q ss_pred EEEee--C--cc-c-----------HHHHHHHhccccCCCCEEEEecCCCCH
Q 024016 75 VVFSV--K--PQ-V-----------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (274)
Q Consensus 75 Iil~v--~--~~-~-----------~~~v~~~i~~~l~~~~~vis~~~g~~~ 110 (274)
||++- | |. . ++++..++..+-.|+.++|-.++++..
T Consensus 82 vvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~ 133 (322)
T cd01338 82 ALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNT 133 (322)
T ss_pred EEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHH
Confidence 99986 2 22 1 344445565554346677777776653
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00044 Score=63.85 Aligned_cols=91 Identities=14% Similarity=0.205 Sum_probs=65.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec--cCc----------------------
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL--SDN---------------------- 65 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~--~~~---------------------- 65 (274)
..||.|||+|.+|..-+..+...|. +|+++ |+++++.+...+.|++.. +..
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA----~V~a~-D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~ 239 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGA----IVRAF-DTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEM 239 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHH
Confidence 4699999999999999988888897 89999 999999998888887621 110
Q ss_pred ---hhhccCCCEEEEeeC-cc-cHHHH-HHHhccccCCCCEEEEec
Q 024016 66 ---NAVVEYSDVVVFSVK-PQ-VVKDV-AMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 66 ---~~~~~~aDiIil~v~-~~-~~~~v-~~~i~~~l~~~~~vis~~ 105 (274)
.+.+.++|+||.|+. |. -...+ .++....+++|.+|+++.
T Consensus 240 ~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 240 ALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 011246999999984 22 12222 244445567888888764
|
|
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=5.1e-05 Score=62.45 Aligned_cols=79 Identities=18% Similarity=0.346 Sum_probs=52.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHH--hCCCCCCCcEEEEeCCCHHHHHHHHHcCcee--ccCchhhcc--CCCEEEEeeCcc
Q 024016 9 ESFILGFIGAGKMAESIAKGVA--KSGVLPPDRICTAVHSNLKRRDAFESIGVKV--LSDNNAVVE--YSDVVVFSVKPQ 82 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~--~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~--~~~~~~~~~--~aDiIil~v~~~ 82 (274)
...+|+|||+|.+|..+++.+. ..|+ ++..++|+++++..... .|..+ ..+..+.++ +.|++++|+|+.
T Consensus 83 ~~~rV~IIGaG~iG~~l~~~~~~~~~g~----~ivgv~D~d~~~~~~~i-~g~~v~~~~~l~~li~~~~iD~ViIa~P~~ 157 (213)
T PRK05472 83 RTWNVALVGAGNLGRALLNYNGFEKRGF----KIVAAFDVDPEKIGTKI-GGIPVYHIDELEEVVKENDIEIGILTVPAE 157 (213)
T ss_pred CCcEEEEECCCHHHHHHHHhhhcccCCc----EEEEEEECChhhcCCEe-CCeEEcCHHHHHHHHHHCCCCEEEEeCCch
Confidence 4568999999999999998643 4555 66654488876553221 23322 234455554 499999999988
Q ss_pred cHHHHHHHhc
Q 024016 83 VVKDVAMQIR 92 (274)
Q Consensus 83 ~~~~v~~~i~ 92 (274)
...++...+.
T Consensus 158 ~~~~i~~~l~ 167 (213)
T PRK05472 158 AAQEVADRLV 167 (213)
T ss_pred hHHHHHHHHH
Confidence 8777665543
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00021 Score=56.22 Aligned_cols=65 Identities=20% Similarity=0.268 Sum_probs=50.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc---Cceec--cCchhhccCCCEEEEeeC
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI---GVKVL--SDNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~---g~~~~--~~~~~~~~~aDiIil~v~ 80 (274)
|||+|||+ |..|+.+++-.++.|| +|+.+ -|++++...++.. ...+. ++..+.+.+-|+||.+..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGH----eVTAi-vRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~ 71 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGH----EVTAI-VRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFG 71 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCC----eeEEE-EeChHhccccccceeecccccChhhhHhhhcCCceEEEecc
Confidence 69999987 9999999999999999 99999 8999987654221 11222 222356778899999983
|
|
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00011 Score=66.71 Aligned_cols=91 Identities=18% Similarity=0.309 Sum_probs=57.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCC--------CCCCCcE-EEEeCCCHHHHHHHHHcCceeccCchhhcc--CCCEEE
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSG--------VLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAVVE--YSDVVV 76 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g--------~~~~~~v-~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~aDiIi 76 (274)
|+++|||+||+|.+|+.+++.|.++. . ..+| .++ +|++++.+.+...+..+.++..+++. +.|+|+
T Consensus 1 m~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~--~i~l~~V~-~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVv 77 (426)
T PRK06349 1 MKPLKVGLLGLGTVGSGVVRILEENAEEIAARAGR--PIEIKKVA-VRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVV 77 (426)
T ss_pred CCeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCC--CEEEEEEE-eCChhhccCCCCcccceeCCHHHHhhCCCCCEEE
Confidence 34579999999999999998876542 1 1133 456 88877654322234456677778775 479999
Q ss_pred EeeCccc-HHHHHHHhccccCCCCEEEEe
Q 024016 77 FSVKPQV-VKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 77 l~v~~~~-~~~v~~~i~~~l~~~~~vis~ 104 (274)
.|+++.. ..+.+. ..+..|+-||+.
T Consensus 78 e~tg~~~~~~~~~~---~aL~~GkhVVta 103 (426)
T PRK06349 78 ELMGGIEPARELIL---KALEAGKHVVTA 103 (426)
T ss_pred ECCCCchHHHHHHH---HHHHCCCeEEEc
Confidence 9986532 233332 334566667754
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00071 Score=62.04 Aligned_cols=89 Identities=15% Similarity=0.187 Sum_probs=62.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc--Ccee-ccCc---h----hhccCCCEEEEe
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--GVKV-LSDN---N----AVVEYSDVVVFS 78 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~--g~~~-~~~~---~----~~~~~aDiIil~ 78 (274)
.+++|.|+|+|.+|..+++.|.+.|+ +|+++ ++++++.+.+.+. +..+ ..|. . ..++++|.|+++
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~----~v~vi-d~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~ 304 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGY----SVKLI-ERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIAL 304 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC----eEEEE-ECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEEC
Confidence 35789999999999999999999998 99999 9999998888763 4432 2221 1 225689999988
Q ss_pred eCcccHHHHHHHhccccCCCCEEE
Q 024016 79 VKPQVVKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 79 v~~~~~~~v~~~i~~~l~~~~~vi 102 (274)
++++...-++..+...+.+..+++
T Consensus 305 ~~~~~~n~~~~~~~~~~~~~~ii~ 328 (453)
T PRK09496 305 TNDDEANILSSLLAKRLGAKKVIA 328 (453)
T ss_pred CCCcHHHHHHHHHHHHhCCCeEEE
Confidence 886654433333333344444444
|
|
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00018 Score=65.39 Aligned_cols=67 Identities=24% Similarity=0.233 Sum_probs=46.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~ 80 (274)
..++|.|||.|.+|.++|+.|.+.|+ +|+++ |+++...+.....+-....+.....+++|+||.+.+
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~~G~----~V~g~-D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~g 68 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQKGV----YVIGV-DKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPG 68 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHCCC----EEEEE-eCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCC
Confidence 45689999999999999999999998 89999 987654332111110111233333467999998874
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00033 Score=60.38 Aligned_cols=96 Identities=22% Similarity=0.345 Sum_probs=63.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH----HHHH------cCceecc-CchhhccCCCEEEEee
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD----AFES------IGVKVLS-DNNAVVEYSDVVVFSV 79 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~----~l~~------~g~~~~~-~~~~~~~~aDiIil~v 79 (274)
+||+|||+|++|++++..|...+. ..++.++ |+++++++ +|.. ....+.. ...+.++++|+|+++-
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~--~~el~Li-Di~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitA 77 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGL--GSELVLI-DINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITA 77 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccc--cceEEEE-EcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeC
Confidence 589999999999999999987776 2389999 99855432 2221 1233333 2356689999999986
Q ss_pred --C--ccc------------HHHHHHHhccccCCCCEEEEecCCCCH
Q 024016 80 --K--PQV------------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (274)
Q Consensus 80 --~--~~~------------~~~v~~~i~~~l~~~~~vis~~~g~~~ 110 (274)
| |.. ++++.+++...- ++.+++-.++++..
T Consensus 78 G~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~-~d~ivlVvtNPvD~ 123 (313)
T COG0039 78 GVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYA-PDAIVLVVTNPVDI 123 (313)
T ss_pred CCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCeEEEEecCcHHH
Confidence 2 431 333334455543 56677767777654
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00047 Score=63.54 Aligned_cols=92 Identities=14% Similarity=0.186 Sum_probs=65.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-ccC------------------------
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-LSD------------------------ 64 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~-~~~------------------------ 64 (274)
..|+.|+|+|.+|...+..+...|. .|+++ ++++++.+.+...|... .-+
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA----~V~v~-d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~ 238 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGA----IVRAF-DTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEM 238 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHH
Confidence 3699999999999999999988887 89999 99999888777766543 111
Q ss_pred --chhhccCCCEEEEee--CcccHHH-HHHHhccccCCCCEEEEecC
Q 024016 65 --NNAVVEYSDVVVFSV--KPQVVKD-VAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 65 --~~~~~~~aDiIil~v--~~~~~~~-v~~~i~~~l~~~~~vis~~~ 106 (274)
..+.++++|+||.|+ |-...+. +.++....+++|.+||+++.
T Consensus 239 ~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 239 ELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred HHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeee
Confidence 123467899999998 2111111 22334455789999998753
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00027 Score=61.76 Aligned_cols=98 Identities=14% Similarity=0.177 Sum_probs=64.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCC---CCcEEEEeCCCH--HHHHHH----HH------cCceeccCchhhccCCCE
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLP---PDRICTAVHSNL--KRRDAF----ES------IGVKVLSDNNAVVEYSDV 74 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~---~~~v~v~~~r~~--~~~~~l----~~------~g~~~~~~~~~~~~~aDi 74 (274)
.||+|||+ |++|+.++..|...+... ..++.++ |+++ ++++-. .. .+..+..+..+.+++||+
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~-Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDi 79 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLL-DIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDV 79 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEE-ecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCE
Confidence 48999999 999999999999877632 1148899 9886 443211 11 123333456678999999
Q ss_pred EEEee--C--cc-c-----------HHHHHHHhccccCCCCEEEEecCCCC
Q 024016 75 VVFSV--K--PQ-V-----------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 75 Iil~v--~--~~-~-----------~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
|+++- | |. . ++++..++.++-+|+.++|-.++++.
T Consensus 80 VVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD 130 (323)
T cd00704 80 AILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPAN 130 (323)
T ss_pred EEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHH
Confidence 99875 2 22 1 34444556555446667776777665
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00029 Score=60.19 Aligned_cols=93 Identities=17% Similarity=0.252 Sum_probs=63.9
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c---Cc--eeccC-chhhccCCCEEEEee
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I---GV--KVLSD-NNAVVEYSDVVVFSV 79 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~---g~--~~~~~-~~~~~~~aDiIil~v 79 (274)
.....++.|+|+|-.+.+++..|++.|. .+|+++ ||+.+++++|++ . +. ..... ..+...++|+||=||
T Consensus 123 ~~~~~~vlilGAGGAarAv~~aL~~~g~---~~i~V~-NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaT 198 (283)
T COG0169 123 DVTGKRVLILGAGGAARAVAFALAEAGA---KRITVV-NRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINAT 198 (283)
T ss_pred ccCCCEEEEECCcHHHHHHHHHHHHcCC---CEEEEE-eCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECC
Confidence 3345789999999999999999999995 389999 999999999887 2 21 11111 112122689999999
Q ss_pred CcccHHH----HHHHhccccCCCCEEEEec
Q 024016 80 KPQVVKD----VAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 80 ~~~~~~~----v~~~i~~~l~~~~~vis~~ 105 (274)
|...... .+. ...++++.++.++.
T Consensus 199 p~Gm~~~~~~~~~~--~~~l~~~~~v~D~v 226 (283)
T COG0169 199 PVGMAGPEGDSPVP--AELLPKGAIVYDVV 226 (283)
T ss_pred CCCCCCCCCCCCCc--HHhcCcCCEEEEec
Confidence 8653221 111 23456777777764
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00025 Score=62.25 Aligned_cols=94 Identities=13% Similarity=0.255 Sum_probs=59.8
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH-HHHHcC--ceecc-CchhhccCCCEEEEeeCccc
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD-AFESIG--VKVLS-DNNAVVEYSDVVVFSVKPQV 83 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~-~l~~~g--~~~~~-~~~~~~~~aDiIil~v~~~~ 83 (274)
+++||+|+|+ |..|.-+.+.|.+.+| +..++... . +.+++. .+.-.| ..+.. +..+ ++++|++|+|+|+..
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~h-P~~~l~~v-~-s~~~aG~~l~~~~~~l~~~~~~~~~-~~~vD~vFla~p~~~ 78 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDF-PVGTLHLL-A-SSESAGHSVPFAGKNLRVREVDSFD-FSQVQLAFFAAGAAV 78 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCC-CceEEEEE-E-CcccCCCeeccCCcceEEeeCChHH-hcCCCEEEEcCCHHH
Confidence 4579999997 9999999999997776 33344444 2 222221 111112 22211 2223 478999999999877
Q ss_pred HHHHHHHhccccCCCCEEEEecCCCC
Q 024016 84 VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
..++...+. ..|..+|+.++...
T Consensus 79 s~~~v~~~~---~~G~~VIDlS~~fR 101 (336)
T PRK05671 79 SRSFAEKAR---AAGCSVIDLSGALP 101 (336)
T ss_pred HHHHHHHHH---HCCCeEEECchhhc
Confidence 777666654 35778998876653
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0006 Score=65.02 Aligned_cols=87 Identities=11% Similarity=0.224 Sum_probs=63.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec-cCc--hh-----hccCCCEEEEeeCc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDN--NA-----VVEYSDVVVFSVKP 81 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~-~~~--~~-----~~~~aDiIil~v~~ 81 (274)
..+|-|+|+|++|..+++.|.++|+ ++++. |.++++.+.+.+.|..+. .|. .+ -++++|.+++++++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~----~vvvI-D~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d 474 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV----KMTVL-DHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDD 474 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC----CEEEE-ECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCC
Confidence 3589999999999999999999998 99999 999999999988776542 221 12 24589999999976
Q ss_pred ccHH-HHHHHhccccCCCCEEE
Q 024016 82 QVVK-DVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 82 ~~~~-~v~~~i~~~l~~~~~vi 102 (274)
+... .++..++.. .|+..++
T Consensus 475 ~~~n~~i~~~ar~~-~p~~~ii 495 (621)
T PRK03562 475 PQTSLQLVELVKEH-FPHLQII 495 (621)
T ss_pred HHHHHHHHHHHHHh-CCCCeEE
Confidence 5533 333333333 3443444
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00052 Score=55.95 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=30.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
..||.|||+|.+|+.++++|...|. .+++++ |++
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv---~~i~lv-D~d 54 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGV---GTIVIV-DDD 54 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCC---CeEEEe-cCC
Confidence 4689999999999999999999996 378888 776
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00027 Score=60.31 Aligned_cols=74 Identities=19% Similarity=0.272 Sum_probs=57.0
Q ss_pred CCCCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCc-cc
Q 024016 6 IPAESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QV 83 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~-mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~-~~ 83 (274)
...+.++|.|||.|. +|.+++..|.+.|. .|+++ ++.. .+..+.+++||+||.+++. ..
T Consensus 154 i~l~Gk~vvVIGrs~~VG~pla~lL~~~ga----tVtv~-~s~t--------------~~l~~~~~~ADIVIsAvg~p~~ 214 (286)
T PRK14175 154 IDLEGKNAVVIGRSHIVGQPVSKLLLQKNA----SVTIL-HSRS--------------KDMASYLKDADVIVSAVGKPGL 214 (286)
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHHCCC----eEEEE-eCCc--------------hhHHHHHhhCCEEEECCCCCcc
Confidence 345678999999988 99999999999987 99999 6542 2445678899999999964 33
Q ss_pred HHHHHHHhccccCCCCEEEEe
Q 024016 84 VKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~ 104 (274)
+.. ..+++|.+||++
T Consensus 215 i~~------~~vk~gavVIDv 229 (286)
T PRK14175 215 VTK------DVVKEGAVIIDV 229 (286)
T ss_pred cCH------HHcCCCcEEEEc
Confidence 221 135788898886
|
|
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00017 Score=51.41 Aligned_cols=78 Identities=15% Similarity=0.238 Sum_probs=56.4
Q ss_pred CCeEEEEcccHHHHHHHHHHH-hCCCCCCCcE-EEEeCCCHHHHHHHHHcCceeccCchhhccC--CCEEEEeeCcccHH
Q 024016 10 SFILGFIGAGKMAESIAKGVA-KSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAVVEY--SDVVVFSVKPQVVK 85 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~-~~g~~~~~~v-~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~--aDiIil~v~~~~~~ 85 (274)
..++.++|+|++|.+++..+. ..|+ .+ .++ +.++++.-.-. .|+.+..+..++.+. .|+-++|+|+...+
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~----~i~~~~-dv~~~~~G~~i-~gipV~~~~~~l~~~~~i~iaii~VP~~~a~ 76 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGF----GIVAVF-DVDPEKIGKEI-GGIPVYGSMDELEEFIEIDIAIITVPAEAAQ 76 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCE----CEEEEE-EECTTTTTSEE-TTEEEESSHHHHHHHCTTSEEEEES-HHHHH
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCC----CCEEEE-EcCCCccCcEE-CCEEeeccHHHhhhhhCCCEEEEEcCHHHHH
Confidence 458999999999999875554 4565 44 455 88887543111 477777677766655 99999999999999
Q ss_pred HHHHHhcc
Q 024016 86 DVAMQIRP 93 (274)
Q Consensus 86 ~v~~~i~~ 93 (274)
++..++..
T Consensus 77 ~~~~~~~~ 84 (96)
T PF02629_consen 77 EVADELVE 84 (96)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887654
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00037 Score=60.59 Aligned_cols=95 Identities=16% Similarity=0.233 Sum_probs=63.1
Q ss_pred eEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH--HHHHH--cCceec--c-C--chhhccCCCEEEEeeC-
Q 024016 12 ILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR--DAFES--IGVKVL--S-D--NNAVVEYSDVVVFSVK- 80 (274)
Q Consensus 12 ~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~--~~l~~--~g~~~~--~-~--~~~~~~~aDiIil~v~- 80 (274)
||+|||+ |++|++++..|...++. .++.++ |+++... -+|.. ....+. . + ..+.+++||+||++.-
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~--~elvL~-Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~ 77 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYV--SELSLY-DIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGV 77 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCC--cEEEEe-cCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCC
Confidence 7999999 99999999999888763 378999 9876221 12222 112222 1 2 2578899999999862
Q ss_pred ---cc------------cHHHHHHHhccccCCCCEEEEecCCCCH
Q 024016 81 ---PQ------------VVKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (274)
Q Consensus 81 ---~~------------~~~~v~~~i~~~l~~~~~vis~~~g~~~ 110 (274)
|. .++++.+.+..+ .|+.+++..+++...
T Consensus 78 ~~~~g~~R~dll~~N~~I~~~i~~~i~~~-~p~~iiivvsNPvDv 121 (312)
T TIGR01772 78 PRKPGMTRDDLFNVNAGIVKDLVAAVAES-CPKAMILVITNPVNS 121 (312)
T ss_pred CCCCCccHHHHHHHhHHHHHHHHHHHHHh-CCCeEEEEecCchhh
Confidence 21 133344445555 577888888888763
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0064 Score=49.29 Aligned_cols=166 Identities=14% Similarity=0.213 Sum_probs=99.9
Q ss_pred CceeccCchhhccCCCEEEEeeCccc-HHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-----CCceEEEcCCcHH
Q 024016 58 GVKVLSDNNAVVEYSDVVVFSVKPQV-VKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-----HSRFIRVMPNTPS 131 (274)
Q Consensus 58 g~~~~~~~~~~~~~aDiIil~v~~~~-~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-----~~~~~~~~p~~~~ 131 (274)
|+.+.++..|+++++|+|+.=+|-.. -.++++++.+.+++|.+|-+. ..++...+.+.+. +-.+.+.||....
T Consensus 126 g~~vttddreavedad~iitwlpkg~~qpdiikkfiddipegaivtha-ctipttkf~kifed~gredlnvtsyhpg~vp 204 (343)
T COG4074 126 GIVVTTDDREAVEDADMIITWLPKGGVQPDIIKKFIDDIPEGAIVTHA-CTIPTTKFKKIFEDMGREDLNVTSYHPGTVP 204 (343)
T ss_pred eeEEecCcHhhhcCCCeEEEeccCCCCCccHHHHHHhcCCCCceEeee-cccchHHHHHHHHHhCccccceeccCCCCCc
Confidence 55667788899999999999987543 456777777778888776654 5566666555443 3457777886533
Q ss_pred hhcCCceEEecCCCCCHHHHHHHHHHhhh-cCCeEEcCccchhhHHHhhcchHHHHHHHHHHHHHHHH-HcCCCHHHHHH
Q 024016 132 AVGEAATVMSLGGTATEEDGELIGKLFGS-VGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGV-AAGLPRELALG 209 (274)
Q Consensus 132 ~~~~g~~~i~~~~~~~~~~~~~v~~ll~~-~g~~~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~-~~Gl~~~~~~~ 209 (274)
+ .+|...+.-| -.++++++.+.++=+. -|..+.+....+...+-+++...+.++.-+-..-++.. -.|-+.+-+..
T Consensus 205 e-mkgqvyiaeg-yaseeavn~lyelg~karg~afk~pa~llgpvcdmcsavtaivyagll~yrdavt~ilgapadfaqm 282 (343)
T COG4074 205 E-MKGQVYIAEG-YASEEAVNALYELGEKARGLAFKVPAYLLGPVCDMCSAVTAIVYAGLLTYRDAVTDILGAPADFAQM 282 (343)
T ss_pred c-ccCcEEEecc-cccHHHHHHHHHHHHHhhcccccCcHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHH
Confidence 2 2344444433 2467777777776543 34457777777766666655444433322223333322 36666665555
Q ss_pred HHHHHHHHHHHHHHhcC
Q 024016 210 LASQTVLGAASMVTKSG 226 (274)
Q Consensus 210 ~~~~~~~~~~~~~~~~~ 226 (274)
+..+.+.....++++.|
T Consensus 283 ma~eal~qi~~lmee~g 299 (343)
T COG4074 283 MAVEALQQIAKLMEEEG 299 (343)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 55566666666655433
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00069 Score=59.65 Aligned_cols=79 Identities=13% Similarity=0.252 Sum_probs=54.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH---------------------HHHHH----HHH--cCcee-
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL---------------------KRRDA----FES--IGVKV- 61 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~---------------------~~~~~----l~~--~g~~~- 61 (274)
..+|.|||+|.+|+.++..|...|+ .+++++ |++. .|++. +.+ .++.+
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGv---g~i~lv-D~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~ 99 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGI---GKLTIA-DRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIV 99 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC---CEEEEE-cCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEE
Confidence 4689999999999999999999997 368888 7763 12222 222 23322
Q ss_pred -c------cCchhhccCCCEEEEeeCcccHHHHHHHhc
Q 024016 62 -L------SDNNAVVEYSDVVVFSVKPQVVKDVAMQIR 92 (274)
Q Consensus 62 -~------~~~~~~~~~aDiIil~v~~~~~~~v~~~i~ 92 (274)
. .+..++++++|+||.|+.....+.++.++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~ 137 (338)
T PRK12475 100 PVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLS 137 (338)
T ss_pred EEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHH
Confidence 1 123456788999999997766666666554
|
|
| >KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00042 Score=59.50 Aligned_cols=106 Identities=15% Similarity=0.218 Sum_probs=74.4
Q ss_pred CCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-ccc
Q 024016 5 PIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQV 83 (274)
Q Consensus 5 ~~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~ 83 (274)
.+....+++||||+|++|+-.+.++..-|- .+..| |.-. ..+.+...|++.. +.+|++..||+|-+=+| ...
T Consensus 141 G~el~GKTLgvlG~GrIGseVA~r~k~~gm----~vI~~-dpi~-~~~~~~a~gvq~v-sl~Eil~~ADFitlH~PLtP~ 213 (406)
T KOG0068|consen 141 GWELRGKTLGVLGLGRIGSEVAVRAKAMGM----HVIGY-DPIT-PMALAEAFGVQLV-SLEEILPKADFITLHVPLTPS 213 (406)
T ss_pred eeEEeccEEEEeecccchHHHHHHHHhcCc----eEEee-cCCC-chHHHHhccceee-eHHHHHhhcCEEEEccCCCcc
Confidence 344455899999999999999999988887 77777 5422 2234455788875 67899999999998887 344
Q ss_pred HHHHH-HHhccccCCCCEEEEecCC--CCHHHHHHhh
Q 024016 84 VKDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWT 117 (274)
Q Consensus 84 ~~~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~ 117 (274)
.+.++ ++-...+++|..||.++-| +....+-+.+
T Consensus 214 T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al 250 (406)
T KOG0068|consen 214 TEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRAL 250 (406)
T ss_pred hhhccCHHHHHHhhCCcEEEEecCCceechHHHHHHH
Confidence 55555 3344457899999988744 2334444444
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0012 Score=52.60 Aligned_cols=33 Identities=30% Similarity=0.462 Sum_probs=28.5
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
||.|||+|.+|+.++..|...|. .+++++ |.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gv---g~i~lv-D~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGV---GNLKLV-DFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCC---CeEEEE-eCCE
Confidence 68999999999999999999997 258888 6654
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00052 Score=59.40 Aligned_cols=91 Identities=20% Similarity=0.285 Sum_probs=61.8
Q ss_pred EEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH----HH------cCceeccCchhhccCCCEEEEeeC----
Q 024016 15 FIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF----ES------IGVKVLSDNNAVVEYSDVVVFSVK---- 80 (274)
Q Consensus 15 iIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l----~~------~g~~~~~~~~~~~~~aDiIil~v~---- 80 (274)
|||+|++|++++..|...+.. .++.++ |+++++++.. .. ..+++..+..+.+++||+|+++.-
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~--~el~L~-Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~~rk 77 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIA--DEIVLI-DINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQK 77 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCC--CEEEEE-eCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCCCCC
Confidence 699999999999999988863 379999 9877654322 22 123444455677899999999862
Q ss_pred ccc------------HHHHHHHhccccCCCCEEEEecCCCC
Q 024016 81 PQV------------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 81 ~~~------------~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
|.. ++++...+..+ .|+.+++..+++..
T Consensus 78 ~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP~d 117 (299)
T TIGR01771 78 PGETRLELVGRNVRIMKSIVPEVVKS-GFDGIFLVATNPVD 117 (299)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCHHH
Confidence 221 33444555554 56777777776654
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00054 Score=60.71 Aligned_cols=92 Identities=15% Similarity=0.239 Sum_probs=58.9
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH-HHH---c-----------CceeccCchhhccCC
Q 024016 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA-FES---I-----------GVKVLSDNNAVVEYS 72 (274)
Q Consensus 9 ~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~-l~~---~-----------g~~~~~~~~~~~~~a 72 (274)
.++||+|+| .|.+|..+.+.|.+... .++..+ .+++++..+ +.. . ...+.....+.+.++
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p~---~el~~~-~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 77 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHPW---FEVTAL-AASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAVDDV 77 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCCC---ceEEEE-EcChhhcCCcccccccccccccccccccceEEEeCCHHHhcCC
Confidence 357999998 89999999999986543 266665 455433221 110 0 112212223345789
Q ss_pred CEEEEeeCcccHHHHHHHhccccCCCCEEEEecCC
Q 024016 73 DVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 73 DiIil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g 107 (274)
|+||+|+|.+...++.+.+. ..|..+|+.++.
T Consensus 78 DvVf~a~p~~~s~~~~~~~~---~~G~~vIDls~~ 109 (349)
T PRK08664 78 DIVFSALPSDVAGEVEEEFA---KAGKPVFSNASA 109 (349)
T ss_pred CEEEEeCChhHHHHHHHHHH---HCCCEEEECCch
Confidence 99999999987777766553 356778877654
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00037 Score=61.34 Aligned_cols=93 Identities=16% Similarity=0.221 Sum_probs=61.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcC--ceeccCchhhccCCCEEEEeeCcccHHHH
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG--VKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g--~~~~~~~~~~~~~aDiIil~v~~~~~~~v 87 (274)
+||+|||+ |..|..+.+.|.+.+| +..++... .+..+.-+.+.-.+ +.+.+...+.++++|+||+|+|.....++
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~h-p~~~l~~l-~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g~s~~~ 79 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNF-PVDKLRLL-ASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGSVSKKY 79 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-CcceEEEE-EccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChHHHHHH
Confidence 68999986 9999999999999887 33345555 44433322222112 22221112334789999999999888888
Q ss_pred HHHhccccCCCCEEEEecCCC
Q 024016 88 AMQIRPLLSRKKLLVSVAAGV 108 (274)
Q Consensus 88 ~~~i~~~l~~~~~vis~~~g~ 108 (274)
...+. ..|..||+.++..
T Consensus 80 ~~~~~---~~G~~VIDlS~~~ 97 (334)
T PRK14874 80 APKAA---AAGAVVIDNSSAF 97 (334)
T ss_pred HHHHH---hCCCEEEECCchh
Confidence 77654 3567888876643
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00079 Score=58.80 Aligned_cols=96 Identities=10% Similarity=0.170 Sum_probs=62.0
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH--HHHHH--cCceec-----cCchhhccCCCEEEEee
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR--DAFES--IGVKVL-----SDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~--~~l~~--~g~~~~-----~~~~~~~~~aDiIil~v 79 (274)
..||+|||+ |++|+.++..|...+.. .++.++ |+++... .++.. ....+. ++..+.++++|+||++-
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~--~el~L~-Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitA 94 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLV--SELHLY-DIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPA 94 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCC--CEEEEE-ecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeC
Confidence 369999999 99999999999877763 279999 9876221 12222 111221 22367789999999986
Q ss_pred --C--cc-cHH-----------HHHHHhccccCCCCEEEEecCCCC
Q 024016 80 --K--PQ-VVK-----------DVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 80 --~--~~-~~~-----------~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
| |. .-. ++.+.+..+ .|+.+++..+++..
T Consensus 95 G~~~~~g~~R~dll~~N~~i~~~i~~~i~~~-~p~aivivvSNPvD 139 (323)
T PLN00106 95 GVPRKPGMTRDDLFNINAGIVKTLCEAVAKH-CPNALVNIISNPVN 139 (323)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeCCCcc
Confidence 2 22 122 223334443 47778888888875
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.001 Score=58.00 Aligned_cols=86 Identities=15% Similarity=0.271 Sum_probs=61.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec-c-Cchhhcc----CCCEEEEeeCccc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-S-DNNAVVE----YSDVVVFSVKPQV 83 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~-~-~~~~~~~----~aDiIil~v~~~~ 83 (274)
..+|+|+|+|-+|..-.+.....|. +|+++ +|++++.+.++++|+... + +..+..+ .+|+|+.++++..
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga----~Via~-~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~~~~ 241 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGA----EVIAI-TRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVGPAT 241 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCC----eEEEE-eCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCChhh
Confidence 3689999999999977776666887 99999 999999998888886422 2 1122222 3999999999656
Q ss_pred HHHHHHHhccccCCCCEEEEe
Q 024016 84 VKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~ 104 (274)
+...++-+ +++-.++.+
T Consensus 242 ~~~~l~~l----~~~G~~v~v 258 (339)
T COG1064 242 LEPSLKAL----RRGGTLVLV 258 (339)
T ss_pred HHHHHHHH----hcCCEEEEE
Confidence 66666544 444455544
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00063 Score=58.93 Aligned_cols=102 Identities=16% Similarity=0.283 Sum_probs=65.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----cCc---eec-cCchhh-ccCCCEEEEe
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IGV---KVL-SDNNAV-VEYSDVVVFS 78 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-----~g~---~~~-~~~~~~-~~~aDiIil~ 78 (274)
++||+|||. |--|.-+.+.|..+.++ ++..+ ..+..+-+.+.+ .|. ... -++.+. .++||+||+|
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~v---e~~~~-ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFla 77 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDV---ELILI-SSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLA 77 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCe---EEEEe-echhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEe
Confidence 579999986 99999999888766542 56555 433322223332 121 111 122232 4469999999
Q ss_pred eCcccHHHHHHHhccccCCCCEEEEecCCCCH---HHHHHhhC
Q 024016 79 VKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL---KDLQEWTG 118 (274)
Q Consensus 79 v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~---~~l~~~~~ 118 (274)
+|...-.+++.++. .++..||++++.... +..++|++
T Consensus 78 lPhg~s~~~v~~l~---~~g~~VIDLSadfR~~d~~~ye~~Yg 117 (349)
T COG0002 78 LPHGVSAELVPELL---EAGCKVIDLSADFRLKDPEVYEKWYG 117 (349)
T ss_pred cCchhHHHHHHHHH---hCCCeEEECCcccccCCHHHHHHhhC
Confidence 99999888887765 356679999877654 34455554
|
|
| >KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.002 Score=55.73 Aligned_cols=102 Identities=19% Similarity=0.300 Sum_probs=69.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhC---CCCCCCcEEEEeCCCHHHHHHHHH-cCc---eeccCchhhccCC--CEEEEeeC
Q 024016 10 SFILGFIGAGKMAESIAKGVAKS---GVLPPDRICTAVHSNLKRRDAFES-IGV---KVLSDNNAVVEYS--DVVVFSVK 80 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~---g~~~~~~v~v~~~r~~~~~~~l~~-~g~---~~~~~~~~~~~~a--DiIil~v~ 80 (274)
..|+||+|+|.|++-.++.|... +| .|+..++|+.+++..+++ .++ ++..+.++++++. |+|.+++|
T Consensus 6 ~ir~Gi~g~g~ia~~f~~al~~~p~s~~----~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~ 81 (351)
T KOG2741|consen 6 TIRWGIVGAGRIARDFVRALHTLPESNH----QIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTP 81 (351)
T ss_pred eeEEEEeehhHHHHHHHHHhccCcccCc----EEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCC
Confidence 46899999999999999988643 34 665555999999988887 454 6778888988864 99999998
Q ss_pred cccHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhh
Q 024016 81 PQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWT 117 (274)
Q Consensus 81 ~~~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~ 117 (274)
..+..+++..+... ...+++.---.++.++..+.+
T Consensus 82 ~~qH~evv~l~l~~--~K~VL~EKPla~n~~e~~~iv 116 (351)
T KOG2741|consen 82 NPQHYEVVMLALNK--GKHVLCEKPLAMNVAEAEEIV 116 (351)
T ss_pred CccHHHHHHHHHHc--CCcEEecccccCCHHHHHHHH
Confidence 65555555444322 223444322234444444443
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00074 Score=59.17 Aligned_cols=98 Identities=15% Similarity=0.166 Sum_probs=61.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCC---CCcEEEEeCCCHH--HHHH----HHH------cCceeccCchhhccCCCE
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLP---PDRICTAVHSNLK--RRDA----FES------IGVKVLSDNNAVVEYSDV 74 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~---~~~v~v~~~r~~~--~~~~----l~~------~g~~~~~~~~~~~~~aDi 74 (274)
.||+|+|+ |.+|+.++..|...+... ..+|.++ |+++. +++. +.. ..+....+..+.+++||+
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~-D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDi 81 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLL-DIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDV 81 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEE-EcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCE
Confidence 58999999 999999999999866431 2379999 88652 1211 110 012233454577899999
Q ss_pred EEEee--C--ccc------------HHHHHHHhccccCCCCEEEEecCCCC
Q 024016 75 VVFSV--K--PQV------------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 75 Iil~v--~--~~~------------~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
||++- + +.. ++++...+..+..++.++|-.++++.
T Consensus 82 VI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD 132 (325)
T cd01336 82 AILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPAN 132 (325)
T ss_pred EEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHH
Confidence 99885 2 111 23444455555456667776767654
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00088 Score=59.90 Aligned_cols=93 Identities=16% Similarity=0.179 Sum_probs=61.4
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcC-----cee--ccCch-hhccCCCEEEEee
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG-----VKV--LSDNN-AVVEYSDVVVFSV 79 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g-----~~~--~~~~~-~~~~~aDiIil~v 79 (274)
+++||+|+|+ |..|..+.+-|.++.+ .+|+.+ .++.+.-+.+.... ... ..+.. +.++++|+||+|+
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~---~el~~l-~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Al 112 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPD---FEITVM-TADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCL 112 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCC---CeEEEE-EChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcC
Confidence 4579999988 9999999998887732 278877 55543322222211 111 11111 2247899999999
Q ss_pred CcccHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 80 KPQVVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 80 ~~~~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
|.....++...+ ..+..||++++...
T Consensus 113 p~~~s~~i~~~~----~~g~~VIDlSs~fR 138 (381)
T PLN02968 113 PHGTTQEIIKAL----PKDLKIVDLSADFR 138 (381)
T ss_pred CHHHHHHHHHHH----hCCCEEEEcCchhc
Confidence 998877777764 25678998876543
|
|
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00097 Score=58.24 Aligned_cols=67 Identities=18% Similarity=0.261 Sum_probs=48.2
Q ss_pred EEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cC------------------ceeccCchhhccCCC
Q 024016 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG------------------VKVLSDNNAVVEYSD 73 (274)
Q Consensus 13 IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g------------------~~~~~~~~~~~~~aD 73 (274)
|||+|+|+||...++.+.+... -++...++.++++...+.. .| +.+..++.++..++|
T Consensus 1 VaInG~GrIGr~varav~~~~d---~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vD 77 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDD---MKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVD 77 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCC---cEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCC
Confidence 6999999999999999875422 2666554888776555443 22 233446778888999
Q ss_pred EEEEeeCcc
Q 024016 74 VVVFSVKPQ 82 (274)
Q Consensus 74 iIil~v~~~ 82 (274)
+|+.|+|..
T Consensus 78 iVve~Tp~~ 86 (333)
T TIGR01546 78 IVVDATPGG 86 (333)
T ss_pred EEEECCCCC
Confidence 999999754
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00066 Score=57.90 Aligned_cols=74 Identities=20% Similarity=0.269 Sum_probs=56.7
Q ss_pred CCCCCeEEEEcccHH-HHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHH
Q 024016 7 PAESFILGFIGAGKM-AESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (274)
Q Consensus 7 ~~~~~~IgiIG~G~m-G~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~ 85 (274)
+...++|.|||.|.+ |.+++.-|.+.|. .|+++ ++.. .+..+.+++||+||.+++...+
T Consensus 155 ~l~Gk~vvViGrs~iVGkPla~lL~~~~a----tVt~~-hs~t--------------~~l~~~~~~ADIVV~avG~~~~- 214 (285)
T PRK14189 155 PLRGAHAVVIGRSNIVGKPMAMLLLQAGA----TVTIC-HSKT--------------RDLAAHTRQADIVVAAVGKRNV- 214 (285)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCC----EEEEe-cCCC--------------CCHHHHhhhCCEEEEcCCCcCc-
Confidence 345689999999998 9999999999987 89988 5431 2455778999999999973322
Q ss_pred HHHHHhccccCCCCEEEEe
Q 024016 86 DVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~ 104 (274)
+.. ..+++|.+||++
T Consensus 215 --i~~--~~ik~gavVIDV 229 (285)
T PRK14189 215 --LTA--DMVKPGATVIDV 229 (285)
T ss_pred --cCH--HHcCCCCEEEEc
Confidence 211 457899999986
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00057 Score=59.83 Aligned_cols=98 Identities=13% Similarity=0.117 Sum_probs=61.6
Q ss_pred eEEEEcc-cHHHHHHHHHHHhCCCCC--CC-cEEEEeCCCHHH--HHH----HHH------cCceeccCchhhccCCCEE
Q 024016 12 ILGFIGA-GKMAESIAKGVAKSGVLP--PD-RICTAVHSNLKR--RDA----FES------IGVKVLSDNNAVVEYSDVV 75 (274)
Q Consensus 12 ~IgiIG~-G~mG~~~a~~L~~~g~~~--~~-~v~v~~~r~~~~--~~~----l~~------~g~~~~~~~~~~~~~aDiI 75 (274)
||+|||+ |++|+.++..|...+... .+ ++.++ |+++.. ++. +.. ..+...++..+.+++||+|
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~Li-D~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiV 79 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLL-DIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVA 79 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEE-ecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEE
Confidence 6999999 999999999999877642 22 58899 985432 211 111 1122222446778999999
Q ss_pred EEee--C--ccc------------HHHHHHHhccccCCCCEEEEecCCCCH
Q 024016 76 VFSV--K--PQV------------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (274)
Q Consensus 76 il~v--~--~~~------------~~~v~~~i~~~l~~~~~vis~~~g~~~ 110 (274)
|++- | +.. ++++.++|..+-+|+.+++-.++++..
T Consensus 80 VitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv 130 (324)
T TIGR01758 80 ILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANT 130 (324)
T ss_pred EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHH
Confidence 9975 2 122 333444555543466777777777653
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0005 Score=61.78 Aligned_cols=75 Identities=23% Similarity=0.337 Sum_probs=52.9
Q ss_pred EEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc----Ccee----ccC---chhhccCCCEEEEeeCc
Q 024016 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI----GVKV----LSD---NNAVVEYSDVVVFSVKP 81 (274)
Q Consensus 13 IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~----g~~~----~~~---~~~~~~~aDiIil~v~~ 81 (274)
|.|+|+|.+|+.+++.|.+.+- ..+|++. +|+.++++.+.+. .+.. ..+ ..++++++|+||-|++|
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~--~~~v~va-~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp 77 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGP--FEEVTVA-DRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGP 77 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTC--E-EEEEE-ESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred CEEEcCcHHHHHHHHHHhcCCC--CCcEEEE-ECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence 7899999999999999998763 1268899 9999999888751 2221 122 34578899999999988
Q ss_pred ccHHHHHHH
Q 024016 82 QVVKDVAMQ 90 (274)
Q Consensus 82 ~~~~~v~~~ 90 (274)
..-..+++.
T Consensus 78 ~~~~~v~~~ 86 (386)
T PF03435_consen 78 FFGEPVARA 86 (386)
T ss_dssp GGHHHHHHH
T ss_pred chhHHHHHH
Confidence 765555543
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0011 Score=47.95 Aligned_cols=76 Identities=9% Similarity=0.155 Sum_probs=51.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec-cCchhhccCCCEEEEeeCcccHHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDNNAVVEYSDVVVFSVKPQVVKD 86 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~-~~~~~~~~~aDiIil~v~~~~~~~ 86 (274)
.+.++|.|||.|.+|..=++.|++.|. +|+++ .++.+..+ ..++.. ....+.++++|+||.|+.+..+.+
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~gA----~v~vi-s~~~~~~~----~~i~~~~~~~~~~l~~~~lV~~at~d~~~n~ 75 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEAGA----KVTVI-SPEIEFSE----GLIQLIRREFEEDLDGADLVFAATDDPELNE 75 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCCTB----EEEEE-ESSEHHHH----TSCEEEESS-GGGCTTESEEEE-SS-HHHHH
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-CCchhhhh----hHHHHHhhhHHHHHhhheEEEecCCCHHHHH
Confidence 356799999999999999999999998 99999 77751112 222221 223456788999999998777665
Q ss_pred HHHHhc
Q 024016 87 VAMQIR 92 (274)
Q Consensus 87 v~~~i~ 92 (274)
.+....
T Consensus 76 ~i~~~a 81 (103)
T PF13241_consen 76 AIYADA 81 (103)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554433
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00085 Score=59.19 Aligned_cols=96 Identities=11% Similarity=0.177 Sum_probs=61.0
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEe-CCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAV-HSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~-~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~ 86 (274)
+.+||+|||+ |..|..+.+.|.+.+| +..++.... .|+..+.-........+.....+.++++|+||+|+|.....+
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~h-P~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~s~~ 84 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDF-PYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGSISKK 84 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCC-CcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcHHHHH
Confidence 4579999986 9999999999988777 333454331 233222111111112222212244578999999999998888
Q ss_pred HHHHhccccCCCCEEEEecCCC
Q 024016 87 VAMQIRPLLSRKKLLVSVAAGV 108 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~~g~ 108 (274)
+..++. ..|..||+.++..
T Consensus 85 ~~~~~~---~~g~~VIDlS~~f 103 (344)
T PLN02383 85 FGPIAV---DKGAVVVDNSSAF 103 (344)
T ss_pred HHHHHH---hCCCEEEECCchh
Confidence 777653 3678899887654
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00087 Score=57.11 Aligned_cols=74 Identities=15% Similarity=0.270 Sum_probs=57.9
Q ss_pred CCCCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-ccc
Q 024016 6 IPAESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQV 83 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~-mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~ 83 (274)
.+...++|.|||-|+ +|.+++.-|.+.|. .|+++ ++.. .+..+.+++||+||.++. |..
T Consensus 155 i~l~Gk~vvViGrs~iVG~Pla~lL~~~~a----tVtv~-hs~T--------------~~l~~~~~~ADIvi~avG~p~~ 215 (285)
T PRK10792 155 IDTYGLNAVVVGASNIVGRPMSLELLLAGC----TVTVC-HRFT--------------KNLRHHVRNADLLVVAVGKPGF 215 (285)
T ss_pred CCCCCCEEEEECCCcccHHHHHHHHHHCCC----eEEEE-ECCC--------------CCHHHHHhhCCEEEEcCCCccc
Confidence 344568999999999 99999999998887 99998 6531 245677899999999994 554
Q ss_pred HHHHHHHhccccCCCCEEEEe
Q 024016 84 VKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~ 104 (274)
+.. ..+++|.+||++
T Consensus 216 v~~------~~vk~gavVIDv 230 (285)
T PRK10792 216 IPG------EWIKPGAIVIDV 230 (285)
T ss_pred ccH------HHcCCCcEEEEc
Confidence 332 346899999986
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00064 Score=57.86 Aligned_cols=91 Identities=20% Similarity=0.261 Sum_probs=68.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCcee---cc---CchhhccCCCEEEEee--C
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKV---LS---DNNAVVEYSDVVVFSV--K 80 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~---~~---~~~~~~~~aDiIil~v--~ 80 (274)
.-||.|||.|..|..=|+-..--|- +|++. ++|.+|++.+.. ++.++ .+ +.++.+.++|+||=+| |
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA----~Vtil-d~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIp 242 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGA----DVTIL-DLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIP 242 (371)
T ss_pred CccEEEECCccccchHHHHHhccCC----eeEEE-ecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEec
Confidence 3589999999999998887776776 99999 999999988887 44432 22 3456788999999887 4
Q ss_pred cccHHH-HHHHhccccCCCCEEEEec
Q 024016 81 PQVVKD-VAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 81 ~~~~~~-v~~~i~~~l~~~~~vis~~ 105 (274)
-...+. +.++....++||.++|++.
T Consensus 243 gakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 243 GAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred CCCCceehhHHHHHhcCCCcEEEEEE
Confidence 333333 3355566688999999764
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0007 Score=56.28 Aligned_cols=63 Identities=17% Similarity=0.290 Sum_probs=50.1
Q ss_pred EEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH--HHHHHHHcCceec-------cCchhhccCCCEEEEeeC
Q 024016 13 LGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLK--RRDAFESIGVKVL-------SDNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 13 IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~--~~~~l~~~g~~~~-------~~~~~~~~~aDiIil~v~ 80 (274)
|.|+|+ |.+|++++..|++.++ +|.+. .|++. ..+.+...|+++. .+..++++++|.||++++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~----~V~~l-~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~ 73 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGF----SVRAL-VRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTP 73 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTG----CEEEE-ESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESS
T ss_pred CEEECCccHHHHHHHHHHHhCCC----CcEEE-EeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecC
Confidence 688986 9999999999999998 99998 78753 4667777787643 123446789999999998
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00079 Score=59.02 Aligned_cols=92 Identities=15% Similarity=0.245 Sum_probs=63.1
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHH-cC-ceeccCchhhccCCCEEEEeeCc-
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFES-IG-VKVLSDNNAVVEYSDVVVFSVKP- 81 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~~-g~~~~~~v~v~~~r~~~~~~~l~~-~g-~~~~~~~~~~~~~aDiIil~v~~- 81 (274)
..+.++|.|+|+ |.||+.+++.|.+. |. .+++++ +|++++++.+.. .+ ..+ .+..+.+.++|+|+.++..
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv---~~lilv-~R~~~rl~~La~el~~~~i-~~l~~~l~~aDiVv~~ts~~ 226 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGV---AELLLV-ARQQERLQELQAELGGGKI-LSLEEALPEADIVVWVASMP 226 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCC---CEEEEE-cCCHHHHHHHHHHhccccH-HhHHHHHccCCEEEECCcCC
Confidence 345689999998 89999999999854 42 289999 999988888765 22 222 2456778899999998843
Q ss_pred ccHHHHHHHhccccCCCCEEEEecCC
Q 024016 82 QVVKDVAMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 82 ~~~~~v~~~i~~~l~~~~~vis~~~g 107 (274)
..+ ++.. ..++++.+++++.-+
T Consensus 227 ~~~--~I~~--~~l~~~~~viDiAvP 248 (340)
T PRK14982 227 KGV--EIDP--ETLKKPCLMIDGGYP 248 (340)
T ss_pred cCC--cCCH--HHhCCCeEEEEecCC
Confidence 321 0100 123567788877443
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0016 Score=55.74 Aligned_cols=73 Identities=15% Similarity=0.269 Sum_probs=54.1
Q ss_pred CCCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccH
Q 024016 7 PAESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~G~-mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~ 84 (274)
..+.+++.|||.|. .|.+++..|.+.|. +|+++ +|... +..+.++++|+||.|++ |.-+
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga----tVtv~-~~~t~--------------~L~~~~~~aDIvI~AtG~~~~v 216 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANA----TVTIC-HSRTQ--------------NLPELVKQADIIVGAVGKPELI 216 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC----EEEEE-eCCch--------------hHHHHhccCCEEEEccCCCCcC
Confidence 34567999999998 99999999999987 99999 77321 23344578999999995 3311
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
. . ..++++.+++++
T Consensus 217 ~---~---~~lk~gavViDv 230 (283)
T PRK14192 217 K---K---DWIKQGAVVVDA 230 (283)
T ss_pred C---H---HHcCCCCEEEEE
Confidence 1 1 236788888876
|
|
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0045 Score=56.22 Aligned_cols=70 Identities=19% Similarity=0.296 Sum_probs=51.4
Q ss_pred CeEEEEcccHH-HHHHHHHHHhCC-CCCCCcEEEEeCCCHHHHHHHHH--------cC----ceeccCchhhccCCCEEE
Q 024016 11 FILGFIGAGKM-AESIAKGVAKSG-VLPPDRICTAVHSNLKRRDAFES--------IG----VKVLSDNNAVVEYSDVVV 76 (274)
Q Consensus 11 ~~IgiIG~G~m-G~~~a~~L~~~g-~~~~~~v~v~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~aDiIi 76 (274)
|||+|||.|.. ..-+.+.|++.. -++..+|.++ |.++++.+...+ .| +..++|..+++++||.||
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~-Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADfVi 79 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLY-DIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFVI 79 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEE-cCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEE
Confidence 69999999983 344666676655 2455689999 999988654221 33 345688899999999999
Q ss_pred EeeCc
Q 024016 77 FSVKP 81 (274)
Q Consensus 77 l~v~~ 81 (274)
..+..
T Consensus 80 ~~irv 84 (425)
T cd05197 80 NQFRV 84 (425)
T ss_pred Eeeec
Confidence 99854
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0012 Score=50.14 Aligned_cols=33 Identities=33% Similarity=0.494 Sum_probs=27.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS 46 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r 46 (274)
..||.|+|+|.+|+.++.+|...|. .+++++ |.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv---~~i~lv-D~ 34 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGV---GKITLV-DD 34 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTT---SEEEEE-ES
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCC---Cceeec-CC
Confidence 4699999999999999999999997 367777 54
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0025 Score=52.39 Aligned_cols=34 Identities=29% Similarity=0.457 Sum_probs=29.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
..+|.|||+|.+|+.++..|...|. .+++++ |.+
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gv---g~i~lv-D~D 61 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGV---GNLKLV-DFD 61 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCC---CeEEEE-eCC
Confidence 4689999999999999999999997 368888 766
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00086 Score=58.55 Aligned_cols=65 Identities=15% Similarity=0.240 Sum_probs=50.3
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec----cC---chhhccCCCEEEEeeC
Q 024016 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL----SD---NNAVVEYSDVVVFSVK 80 (274)
Q Consensus 11 ~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~----~~---~~~~~~~aDiIil~v~ 80 (274)
|||.|+| +|.+|+.+++.|++.|| +|++. .|++++...+...++++. .+ ..++++++|+||-++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~----~V~~l-~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGY----QVRCL-VRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC----eEEEE-EcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 5899998 59999999999999999 99999 898877655555565432 12 2455788999998763
|
|
| >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0058 Score=55.64 Aligned_cols=70 Identities=14% Similarity=0.208 Sum_probs=50.0
Q ss_pred CeEEEEcccHH-HHHHHHHHHhCC-CCCCCcEEEEeCCCHHHHHHHHH--------cC----ceeccCchhhccCCCEEE
Q 024016 11 FILGFIGAGKM-AESIAKGVAKSG-VLPPDRICTAVHSNLKRRDAFES--------IG----VKVLSDNNAVVEYSDVVV 76 (274)
Q Consensus 11 ~~IgiIG~G~m-G~~~a~~L~~~g-~~~~~~v~v~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~aDiIi 76 (274)
|||+|||+|.. +..+...|.+.. -++..+|.++ |.++++.+...+ .| +..++|..+++++||.||
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~-DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gADfVi 79 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLY-DIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTDADFVF 79 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEE-CCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCCCCEEE
Confidence 69999999985 223555665542 2355689999 999988654322 23 345678899999999999
Q ss_pred EeeCc
Q 024016 77 FSVKP 81 (274)
Q Consensus 77 l~v~~ 81 (274)
.....
T Consensus 80 ~~irv 84 (437)
T cd05298 80 AQIRV 84 (437)
T ss_pred EEeee
Confidence 99854
|
Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas |
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0021 Score=53.39 Aligned_cols=78 Identities=15% Similarity=0.257 Sum_probs=52.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEE-EEeCC----------CHHHHHHHHH-cC-------ceeccCchhh
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHS----------NLKRRDAFES-IG-------VKVLSDNNAV 68 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~-v~~~r----------~~~~~~~l~~-~g-------~~~~~~~~~~ 68 (274)
++.+||+|.|.|++|+.+++.|.+.|. .|+ +. |. +.+.+..+++ .| .... ++.+.
T Consensus 29 l~~~~v~I~G~G~VG~~~a~~L~~~g~----~vv~v~-D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~i 102 (227)
T cd01076 29 LAGARVAIQGFGNVGSHAARFLHEAGA----KVVAVS-DSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEEL 102 (227)
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHCCC----EEEEEE-CCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCccc
Confidence 456899999999999999999999998 776 55 76 5665555444 23 1211 22232
Q ss_pred c-cCCCEEEEeeCcccH-HHHHHHh
Q 024016 69 V-EYSDVVVFSVKPQVV-KDVAMQI 91 (274)
Q Consensus 69 ~-~~aDiIil~v~~~~~-~~v~~~i 91 (274)
. .+||+++-|.+.+.+ .+-+.++
T Consensus 103 ~~~~~Dvlip~a~~~~i~~~~~~~l 127 (227)
T cd01076 103 LELDCDILIPAALENQITADNADRI 127 (227)
T ss_pred eeecccEEEecCccCccCHHHHhhc
Confidence 2 378999999876654 3444444
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0015 Score=57.63 Aligned_cols=93 Identities=20% Similarity=0.258 Sum_probs=54.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhC--------CCCCCCcEEEEeCCC----------HHHHHHHHH-cCc-e------ecc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKS--------GVLPPDRICTAVHSN----------LKRRDAFES-IGV-K------VLS 63 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~--------g~~~~~~v~v~~~r~----------~~~~~~l~~-~g~-~------~~~ 63 (274)
.+||+|+|+|+||+.+++.|.+. |. ..+|...++++ .+++..+.+ .+. . ...
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~--~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGL--DLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEI 79 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCC--CEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccC
Confidence 36899999999999999998765 31 01444332653 334333333 231 1 123
Q ss_pred Cchhhcc--CCCEEEEeeCcccH--HHHHHHhccccCCCCEEEEe
Q 024016 64 DNNAVVE--YSDVVVFSVKPQVV--KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 64 ~~~~~~~--~aDiIil~v~~~~~--~~v~~~i~~~l~~~~~vis~ 104 (274)
+..+++. +.|+|+.|+|+... +...+-+...+..|+-||+.
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVta 124 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTS 124 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcC
Confidence 5566653 68999999986432 22222223345567777754
|
|
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0068 Score=49.60 Aligned_cols=87 Identities=14% Similarity=0.186 Sum_probs=60.3
Q ss_pred CCCCCCCC--CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHH-cCceeccC--chhhccCCCE
Q 024016 1 MDAFPIPA--ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFES-IGVKVLSD--NNAVVEYSDV 74 (274)
Q Consensus 1 ~~~~~~~~--~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-~~~~~l~~-~g~~~~~~--~~~~~~~aDi 74 (274)
|..+|... +.++|.|||.|..|..=++.|++.|- +|+++ ..+. +....+.+ .++..... ..+...++++
T Consensus 1 ~~~lPl~~~l~~k~VlvvGgG~va~rKa~~ll~~ga----~v~Vv-s~~~~~el~~~~~~~~i~~~~~~~~~~~~~~~~l 75 (210)
T COG1648 1 MNYLPLFLDLEGKKVLVVGGGSVALRKARLLLKAGA----DVTVV-SPEFEPELKALIEEGKIKWIEREFDAEDLDDAFL 75 (210)
T ss_pred CCccceEEEcCCCEEEEECCCHHHHHHHHHHHhcCC----EEEEE-cCCccHHHHHHHHhcCcchhhcccChhhhcCceE
Confidence 45566554 45789999999999999999999998 99999 5554 44444444 33332211 1233456999
Q ss_pred EEEeeCcccHHHHHHHhc
Q 024016 75 VVFSVKPQVVKDVAMQIR 92 (274)
Q Consensus 75 Iil~v~~~~~~~v~~~i~ 92 (274)
||.|+++..+.+-+.+..
T Consensus 76 viaAt~d~~ln~~i~~~a 93 (210)
T COG1648 76 VIAATDDEELNERIAKAA 93 (210)
T ss_pred EEEeCCCHHHHHHHHHHH
Confidence 999999887766555444
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0012 Score=60.53 Aligned_cols=90 Identities=23% Similarity=0.319 Sum_probs=67.1
Q ss_pred CCCeEEEEcc----cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccH
Q 024016 9 ESFILGFIGA----GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG~----G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~ 84 (274)
+.++|+|||. |++|..+.++|.+.|| ..+|+.. |++.... .|+.++.+..++-...|++++++|++.+
T Consensus 6 ~p~siavvGaS~~~~~~g~~~~~~l~~~gf--~g~v~~V-np~~~~i-----~G~~~~~sl~~lp~~~Dlavi~vp~~~~ 77 (447)
T TIGR02717 6 NPKSVAVIGASRDPGKVGYAIMKNLIEGGY--KGKIYPV-NPKAGEI-----LGVKAYPSVLEIPDPVDLAVIVVPAKYV 77 (447)
T ss_pred CCCEEEEEccCCCCCchHHHHHHHHHhCCC--CCcEEEE-CCCCCcc-----CCccccCCHHHCCCCCCEEEEecCHHHH
Confidence 3468999999 8999999999999998 1256666 6553321 5788888888877788999999999999
Q ss_pred HHHHHHhccccCCCCEEEEecCCC
Q 024016 85 KDVAMQIRPLLSRKKLLVSVAAGV 108 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~~g~ 108 (274)
.+++++.... ....++| +++|.
T Consensus 78 ~~~l~e~~~~-gv~~~vi-~s~gf 99 (447)
T TIGR02717 78 PQVVEECGEK-GVKGAVV-ITAGF 99 (447)
T ss_pred HHHHHHHHhc-CCCEEEE-ECCCc
Confidence 9999887653 2333333 44554
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00099 Score=58.45 Aligned_cols=94 Identities=16% Similarity=0.241 Sum_probs=61.5
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH--HHHcCceeccCchhh-ccCCCEEEEeeCcccH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA--FESIGVKVLSDNNAV-VEYSDVVVFSVKPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~--l~~~g~~~~~~~~~~-~~~aDiIil~v~~~~~ 84 (274)
+.+||+|||+ |..|.-+.+.|.+..| +..++... ....+.-+. +......+. +..+. ..++|++|+|+|....
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~h-P~~~l~~l-aS~~saG~~~~~~~~~~~v~-~~~~~~~~~~Dvvf~a~p~~~s 79 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQF-PVGELYAL-ASEESAGETLRFGGKSVTVQ-DAAEFDWSQAQLAFFVAGREAS 79 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCC-CceEEEEE-EccCcCCceEEECCcceEEE-eCchhhccCCCEEEECCCHHHH
Confidence 6789999988 9999999998887655 44566655 322211111 111122332 33332 2689999999999887
Q ss_pred HHHHHHhccccCCCCEEEEecCCC
Q 024016 85 KDVAMQIRPLLSRKKLLVSVAAGV 108 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~~g~ 108 (274)
.++..++. ..|..||+.++..
T Consensus 80 ~~~~~~~~---~~g~~VIDlS~~f 100 (336)
T PRK08040 80 AAYAEEAT---NAGCLVIDSSGLF 100 (336)
T ss_pred HHHHHHHH---HCCCEEEECChHh
Confidence 77777664 3578899887654
|
|
| >PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0054 Score=46.34 Aligned_cols=101 Identities=20% Similarity=0.232 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHhhhcCCe-EEcCccc---hhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Q 024016 147 TEEDGELIGKLFGSVGKI-WRADEKL---FDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMV 222 (274)
Q Consensus 147 ~~~~~~~v~~ll~~~g~~-~~~~e~~---~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~ 222 (274)
+++..+.++++++.+|.. +.+++++ +|...++. .+|...+...-.+...+.|++.+++.+++.+.+.++.+.+
T Consensus 9 d~~~~~~l~~l~~~lg~~~~~i~~~~r~~yHaAav~a---sNf~~~L~~~a~~ll~~~gi~~~~a~~~L~PLi~~t~~n~ 85 (132)
T PF10728_consen 9 DEEALEVLQELAKELGGRPFEIDSEQRALYHAAAVFA---SNFLVALYALAAELLEQAGIDFEEALEALLPLIRETLENI 85 (132)
T ss_dssp SHHHHHHHHHHHHHTTSEEEE--GGGHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTT-SHHH--HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCceEEeCHHhHHHHHHHHHHH---HhhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHH
Confidence 788999999999999965 7777664 45555543 3555555555555677899999999999999999999998
Q ss_pred HhcCCCh-HHHHHhcCCCC-chHHHHHHHHHh
Q 024016 223 TKSGKHP-GQLKDDVASPG-GTTIAGIHELEK 252 (274)
Q Consensus 223 ~~~~~~~-~~~~~~~~~~~-g~t~~~l~~l~~ 252 (274)
.+.| | +.+..-+...+ ++...+++.|++
T Consensus 86 ~~~g--~~~alTGP~~RgD~~Tv~kHl~~L~~ 115 (132)
T PF10728_consen 86 LQLG--PADALTGPAARGDIGTVAKHLAALDD 115 (132)
T ss_dssp HHS---HHHH--SCCHCTHHHHHHHHHHHCCC
T ss_pred HhcC--chhccCCCcccCCHHHHHHHHHHHhc
Confidence 7643 3 33332222222 366667777765
|
; PDB: 3D1L_A 2I76_A 3DFU_A. |
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0014 Score=56.88 Aligned_cols=82 Identities=10% Similarity=0.175 Sum_probs=56.5
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHHH
Q 024016 10 SFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 10 ~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~ 88 (274)
++||+||| .|..|.-+.+-|.++.++ ++... ..+..+ .. .+..+...++|++|+|+|.....++.
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~---~l~~~-~s~~~~-------~~---~~~~~~~~~~DvvFlalp~~~s~~~~ 67 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDI---ELLSI-PEAKRK-------DA---AARRELLNAADVAILCLPDDAAREAV 67 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCe---EEEEE-ecCCCC-------cc---cCchhhhcCCCEEEECCCHHHHHHHH
Confidence 57999998 599999999988776542 44333 222111 11 22344557899999999999888887
Q ss_pred HHhccccCCCCEEEEecCCC
Q 024016 89 MQIRPLLSRKKLLVSVAAGV 108 (274)
Q Consensus 89 ~~i~~~l~~~~~vis~~~g~ 108 (274)
.++. ..|..||+.++..
T Consensus 68 ~~~~---~~g~~VIDlSadf 84 (313)
T PRK11863 68 ALID---NPATRVIDASTAH 84 (313)
T ss_pred HHHH---hCCCEEEECChhh
Confidence 7764 3678899886543
|
|
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0017 Score=56.79 Aligned_cols=62 Identities=18% Similarity=0.259 Sum_probs=44.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v 79 (274)
+.++|.|||+|-||...+++|.++|. .+|++. ||+.+.. .+.+... ...+...++|+||.|+
T Consensus 173 ~~k~vLvIGaGem~~l~a~~L~~~g~---~~i~v~-nRt~~~~-~~~~~~~----~~~~~~~~~DvVIs~t 234 (338)
T PRK00676 173 KKASLLFIGYSEINRKVAYYLQRQGY---SRITFC-SRQQLTL-PYRTVVR----EELSFQDPYDVIFFGS 234 (338)
T ss_pred cCCEEEEEcccHHHHHHHHHHHHcCC---CEEEEE-cCCcccc-chhhhhh----hhhhcccCCCEEEEcC
Confidence 56799999999999999999999996 279999 9997531 1111100 1113346889999973
|
|
| >PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.032 Score=49.42 Aligned_cols=154 Identities=19% Similarity=0.212 Sum_probs=95.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----c-Cc---e-----------------eccCc
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----I-GV---K-----------------VLSDN 65 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~----~-g~---~-----------------~~~~~ 65 (274)
.+|-|+|+|..+--+|..+.+.+. ..|-+. +|...+.+.+.+ . +. . ...+.
T Consensus 2 ~~VLI~GtGPvAiQLAv~lk~~~~---~~vGi~-~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~ 77 (429)
T PF10100_consen 2 GNVLIVGTGPVAIQLAVILKKHGN---CRVGIV-GRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDY 77 (429)
T ss_pred CceEEEcCCHHHHHHHHHHHhccC---ceeeee-cCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCH
Confidence 479999999999999998877654 368888 887666554432 1 10 1 12334
Q ss_pred hhhccCCCEEEEeeCcccHHHHHHHhcc-ccCCCCEEEEecCCCCHHHH-HHhhC----CCceEEEcC----------Cc
Q 024016 66 NAVVEYSDVVVFSVKPQVVKDVAMQIRP-LLSRKKLLVSVAAGVKLKDL-QEWTG----HSRFIRVMP----------NT 129 (274)
Q Consensus 66 ~~~~~~aDiIil~v~~~~~~~v~~~i~~-~l~~~~~vis~~~g~~~~~l-~~~~~----~~~~~~~~p----------~~ 129 (274)
.++..+-|.+|+|||.++..+|+++|.. .++.=+.+|=++.+.....+ +..+. +..++.+.. ..
T Consensus 78 ~~i~g~WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFStY~gdTr~~d~~~ 157 (429)
T PF10100_consen 78 EEIEGEWDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFSTYYGDTRWSDGEQ 157 (429)
T ss_pred HHhcccccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCCCceEEEeecccccceeccCCC
Confidence 5566678999999999999999998764 23333456656666665433 22222 455655432 11
Q ss_pred HHhh-cCC--ceEEecCCCCCHHHHHHHHHHhhhcCCe-EEcC
Q 024016 130 PSAV-GEA--ATVMSLGGTATEEDGELIGKLFGSVGKI-WRAD 168 (274)
Q Consensus 130 ~~~~-~~g--~~~i~~~~~~~~~~~~~v~~ll~~~g~~-~~~~ 168 (274)
|..+ -.| ..++......+....++++.+++.+|.. ..++
T Consensus 158 ~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~~ 200 (429)
T PF10100_consen 158 PNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQLEVMD 200 (429)
T ss_pred cceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCeEEEeC
Confidence 1111 011 1122223344567789999999999965 5554
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0044 Score=50.61 Aligned_cols=73 Identities=16% Similarity=0.228 Sum_probs=53.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH-HHHHHHHc-Cceecc--CchhhccCCCEEEEeeCcccH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-RRDAFESI-GVKVLS--DNNAVVEYSDVVVFSVKPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~-~~~~l~~~-g~~~~~--~~~~~~~~aDiIil~v~~~~~ 84 (274)
+.++|.|||.|.+|..-++.|++.|. +|+++ +.+.. ..+.+.+. .+.... -..+.+.++|+||.|+.+..+
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga----~VtVv-sp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~l 82 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGA----QLRVI-AEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEEL 82 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCC----EEEEE-cCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHHH
Confidence 45799999999999999999999998 99999 77653 44555554 344321 113457889999999877655
Q ss_pred HH
Q 024016 85 KD 86 (274)
Q Consensus 85 ~~ 86 (274)
..
T Consensus 83 n~ 84 (205)
T TIGR01470 83 NR 84 (205)
T ss_pred HH
Confidence 44
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0019 Score=55.69 Aligned_cols=70 Identities=26% Similarity=0.230 Sum_probs=47.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH---HHHHHHHH-c---C--cee--c--cC---chhhccCC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL---KRRDAFES-I---G--VKV--L--SD---NNAVVEYS 72 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~---~~~~~l~~-~---g--~~~--~--~~---~~~~~~~a 72 (274)
+.+++.|+|+|.+|.+++..|.+.|. .+|+++ +|++ ++++.+.+ . + +.+ . ++ ..+.++.+
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~---~~V~I~-~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~ 200 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGA---KEITIF-NIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASS 200 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC---CEEEEE-eCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccC
Confidence 45689999999999999999999997 249999 9986 56655543 1 1 111 1 11 12234567
Q ss_pred CEEEEeeCcc
Q 024016 73 DVVVFSVKPQ 82 (274)
Q Consensus 73 DiIil~v~~~ 82 (274)
|+||-|+|..
T Consensus 201 DilINaTp~G 210 (289)
T PRK12548 201 DILVNATLVG 210 (289)
T ss_pred CEEEEeCCCC
Confidence 8888888654
|
|
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00068 Score=50.10 Aligned_cols=83 Identities=16% Similarity=0.216 Sum_probs=51.5
Q ss_pred cccHHHHHHHHHHHhC----CCCCCCcEEEEeCCC--HHHHHHHHHcCceeccCchhhcc--CCCEEEEeeCcccHHHHH
Q 024016 17 GAGKMAESIAKGVAKS----GVLPPDRICTAVHSN--LKRRDAFESIGVKVLSDNNAVVE--YSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 17 G~G~mG~~~a~~L~~~----g~~~~~~v~v~~~r~--~~~~~~l~~~g~~~~~~~~~~~~--~aDiIil~v~~~~~~~v~ 88 (274)
|+|+||+.++..|.+. ++ +|..+++|+ ..........+.....+..++++ +.|+||=|+.++.+.+.+
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~----~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~~~~ 76 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDL----EVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVAEYY 76 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEE----EEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCcccCCE----EEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHHHHH
Confidence 8999999999999876 34 554333887 11111111123445577788877 899999998888777766
Q ss_pred HHhccccCCCCEEEEecC
Q 024016 89 MQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 89 ~~i~~~l~~~~~vis~~~ 106 (274)
... +..|.-||+.+.
T Consensus 77 ~~~---L~~G~~VVt~nk 91 (117)
T PF03447_consen 77 EKA---LERGKHVVTANK 91 (117)
T ss_dssp HHH---HHTTCEEEES-H
T ss_pred HHH---HHCCCeEEEECH
Confidence 554 346677886644
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0045 Score=47.40 Aligned_cols=32 Identities=28% Similarity=0.444 Sum_probs=28.3
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
||.|||+|.+|+.++++|...|. .+++++ |.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv---~~i~iv-D~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV---GKITLI-DFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC---CEEEEE-cCC
Confidence 68999999999999999999997 368888 765
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0011 Score=58.34 Aligned_cols=91 Identities=16% Similarity=0.230 Sum_probs=59.5
Q ss_pred eEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCc--eeccCchhhccCCCEEEEeeCcccHHHHH
Q 024016 12 ILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV--KVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 12 ~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~--~~~~~~~~~~~~aDiIil~v~~~~~~~v~ 88 (274)
||+||| .|..|..+.+.|.+++| +..++.++ .+..+.-+.+.-.|. .+.+-..+.+.++|++|+|++.....++.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~h-p~~~l~~~-as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~~s~~~a 78 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNF-PIDKLVLL-ASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGSVSKEFA 78 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCC-ChhhEEEE-eccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHHHHHHHH
Confidence 689999 69999999999988887 43345445 444332222222232 22211223457899999999999888877
Q ss_pred HHhccccCCCCEEEEecCC
Q 024016 89 MQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 89 ~~i~~~l~~~~~vis~~~g 107 (274)
..+. ..|..||+.++.
T Consensus 79 ~~~~---~~G~~VID~ss~ 94 (339)
T TIGR01296 79 PKAA---KCGAIVIDNTSA 94 (339)
T ss_pred HHHH---HCCCEEEECCHH
Confidence 6654 356778887553
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0047 Score=51.61 Aligned_cols=100 Identities=19% Similarity=0.238 Sum_probs=65.9
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH-----HHHHH---cCceeccCchhhccCCCEEEEeeC
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR-----DAFES---IGVKVLSDNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~-----~~l~~---~g~~~~~~~~~~~~~aDiIil~v~ 80 (274)
++||+|.|+ |+||+.+.+.+.+...+ ++....+|.+... .++.. .|+.+.++......++|++|=.+.
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~---~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT~ 78 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDL---ELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFTT 78 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCc---eEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECCC
Confidence 579999999 99999999999877631 4433327765422 22222 456666666666778999999888
Q ss_pred cccHHHHHHHhccccCCCCEEEEecCCCCHHHHHH
Q 024016 81 PQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQE 115 (274)
Q Consensus 81 ~~~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~ 115 (274)
|+...+.++....+ +-.+|| -+.|.+.+.+++
T Consensus 79 P~~~~~~l~~~~~~--~~~lVI-GTTGf~~e~~~~ 110 (266)
T COG0289 79 PEATLENLEFALEH--GKPLVI-GTTGFTEEQLEK 110 (266)
T ss_pred chhhHHHHHHHHHc--CCCeEE-ECCCCCHHHHHH
Confidence 88777776554432 223455 457787665543
|
|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0031 Score=51.95 Aligned_cols=112 Identities=16% Similarity=0.195 Sum_probs=65.3
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH----------HHHHHHHHc-Cceecc-----Cchhhc-
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL----------KRRDAFESI-GVKVLS-----DNNAVV- 69 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~----------~~~~~l~~~-g~~~~~-----~~~~~~- 69 (274)
.++.+||.|.|.|++|+.+++.|.+.|. ..|.+. |.+. +..+...+. ++.... +..++.
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~---~vV~vs-D~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGG---KVLAVS-DPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILG 95 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCC---EEEEEE-cCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCccccee
Confidence 3456899999999999999999999987 145566 8877 655554442 222111 122322
Q ss_pred cCCCEEEEeeCcccHH-HHHHHhccccCCCCEEEEecCC-CCHHHHHHhhCCCceEEEcCCc
Q 024016 70 EYSDVVVFSVKPQVVK-DVAMQIRPLLSRKKLLVSVAAG-VKLKDLQEWTGHSRFIRVMPNT 129 (274)
Q Consensus 70 ~~aDiIil~v~~~~~~-~v~~~i~~~l~~~~~vis~~~g-~~~~~l~~~~~~~~~~~~~p~~ 129 (274)
.+||+++.|...+.+. +...++. -++|+.-.++ ++. .-.+.+.. +-+.+.|..
T Consensus 96 ~~~DVlipaA~~~~i~~~~a~~l~-----a~~V~e~AN~p~t~-~a~~~L~~-~Gi~v~Pd~ 150 (217)
T cd05211 96 LDVDIFAPCALGNVIDLENAKKLK-----AKVVAEGANNPTTD-EALRILHE-RGIVVAPDI 150 (217)
T ss_pred ccccEEeeccccCccChhhHhhcC-----ccEEEeCCCCCCCH-HHHHHHHH-CCcEEEChH
Confidence 3899999998766543 3333332 2456654443 333 33334432 223444543
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.003 Score=58.18 Aligned_cols=65 Identities=15% Similarity=0.158 Sum_probs=49.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEe
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFS 78 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~ 78 (274)
+.+||.|||.|..|.+.|+.|.+.|+ +|+++ |+.+.....+.+.|+.......+.+.++|+||..
T Consensus 8 ~~~~i~viG~G~~G~~~a~~l~~~G~----~v~~~-D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~s 72 (460)
T PRK01390 8 AGKTVAVFGLGGSGLATARALVAGGA----EVIAW-DDNPASRAKAAAAGITTADLRTADWSGFAALVLS 72 (460)
T ss_pred CCCEEEEEeecHhHHHHHHHHHHCCC----EEEEE-CCChhhHHHHHhcCccccCCChhHHcCCCEEEEC
Confidence 45689999999999999999999999 99999 9776544456566776533222335679998864
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0041 Score=53.54 Aligned_cols=70 Identities=20% Similarity=0.244 Sum_probs=50.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH---HHHHHHHH-c----C--ceeccCc------hhhccCC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL---KRRDAFES-I----G--VKVLSDN------NAVVEYS 72 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~---~~~~~l~~-~----g--~~~~~~~------~~~~~~a 72 (274)
+.+++.|||+|-.+++++..|.+.|. .+|+++ +|++ ++++.+.+ . + +... +. .+...++
T Consensus 123 ~~k~vlvlGaGGaarAi~~~l~~~g~---~~i~i~-nRt~~~~~ka~~la~~~~~~~~~~~~~~-~~~~~~~l~~~~~~a 197 (288)
T PRK12749 123 KGKTMVLLGAGGASTAIGAQGAIEGL---KEIKLF-NRRDEFFDKALAFAQRVNENTDCVVTVT-DLADQQAFAEALASA 197 (288)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC---CEEEEE-eCCccHHHHHHHHHHHhhhccCceEEEe-chhhhhhhhhhcccC
Confidence 45689999999999999999998886 389999 9994 57777765 2 1 1221 11 1234578
Q ss_pred CEEEEeeCccc
Q 024016 73 DVVVFSVKPQV 83 (274)
Q Consensus 73 DiIil~v~~~~ 83 (274)
|+||-|+|...
T Consensus 198 DivINaTp~Gm 208 (288)
T PRK12749 198 DILTNGTKVGM 208 (288)
T ss_pred CEEEECCCCCC
Confidence 99998887643
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0029 Score=54.00 Aligned_cols=66 Identities=20% Similarity=0.218 Sum_probs=50.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCcc
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQ 82 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~ 82 (274)
.++.|+|+|-.+++++..|.+.|. .+|+++ +|++++++.+.+ .+.....+. ....+|+||=|+|..
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~---~~i~i~-nR~~~~a~~la~~~~~~~~~~~--~~~~~dlvINaTp~G 189 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGF---TDGTIV-ARNEKTGKALAELYGYEWRPDL--GGIEADILVNVTPIG 189 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCC---CEEEEE-eCCHHHHHHHHHHhCCcchhhc--ccccCCEEEECCccc
Confidence 489999999999999999999886 269999 999999988876 333221111 124589999888754
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0023 Score=56.26 Aligned_cols=96 Identities=14% Similarity=0.195 Sum_probs=59.6
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCC-CHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHH
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r-~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v 87 (274)
.+||||||+ |..|.-|.+.|.++.+++..++..+..+ +..+.-.+......+.....+...++|++|+|+|.....++
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~~~~~Divf~a~~~~~s~~~ 84 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINSFEGVDIAFFSAGGEVSRQF 84 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHHhcCCCEEEECCChHHHHHH
Confidence 369999988 9999999998885443333335545122 22111111111223221122335789999999999988887
Q ss_pred HHHhccccCCCCEEEEecCCC
Q 024016 88 AMQIRPLLSRKKLLVSVAAGV 108 (274)
Q Consensus 88 ~~~i~~~l~~~~~vis~~~g~ 108 (274)
...+. ..|..||+.++..
T Consensus 85 ~~~~~---~~G~~VID~Ss~f 102 (347)
T PRK06728 85 VNQAV---SSGAIVIDNTSEY 102 (347)
T ss_pred HHHHH---HCCCEEEECchhh
Confidence 77654 3678899886654
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0055 Score=54.05 Aligned_cols=79 Identities=15% Similarity=0.235 Sum_probs=53.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH---------------------HHHH----HHHH--cCcee-
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL---------------------KRRD----AFES--IGVKV- 61 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~---------------------~~~~----~l~~--~g~~~- 61 (274)
..||.|||+|.+|+.++..|...|. .+++++ |++. .|++ .+.+ ..+.+
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGv---g~i~lv-D~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~ 99 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGV---GKVTIV-DRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVE 99 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC---CeEEEE-eCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEE
Confidence 4689999999999999999999997 378888 7752 1222 2222 12221
Q ss_pred -c------cCchhhccCCCEEEEeeCcccHHHHHHHhc
Q 024016 62 -L------SDNNAVVEYSDVVVFSVKPQVVKDVAMQIR 92 (274)
Q Consensus 62 -~------~~~~~~~~~aDiIil~v~~~~~~~v~~~i~ 92 (274)
. .+..+.++++|+||.|+.....+..+.++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~ 137 (339)
T PRK07688 100 AIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAA 137 (339)
T ss_pred EEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHH
Confidence 1 122456788999999997666666666554
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.003 Score=57.92 Aligned_cols=67 Identities=19% Similarity=0.274 Sum_probs=50.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHH----HHHHHcCceec--cCchhhccCCCEEEEee
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRR----DAFESIGVKVL--SDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-~~~----~~l~~~g~~~~--~~~~~~~~~aDiIil~v 79 (274)
++.++|.|+|.|.+|.++|+.|.+.|+ +|+++ +++. +.. +.+.+.|+++. ....+...++|+||.++
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~----~V~~~-d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~ 76 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA----KVILT-DEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSP 76 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECC
Confidence 356799999999999999999999999 99999 8874 333 33444566542 22334456799999987
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0028 Score=54.43 Aligned_cols=69 Identities=20% Similarity=0.259 Sum_probs=49.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc-----Cc---eecc--CchhhccCCCEEEEe
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-----GV---KVLS--DNNAVVEYSDVVVFS 78 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~-----g~---~~~~--~~~~~~~~aDiIil~ 78 (274)
+.+++.|+|+|-.|++++..|.+.|. .+|+++ ||+.++++.+.+. +. ...+ +..+...++|+||=|
T Consensus 126 ~~k~vlilGaGGaarAi~~aL~~~g~---~~i~i~-nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINa 201 (283)
T PRK14027 126 KLDSVVQVGAGGVGNAVAYALVTHGV---QKLQVA-DLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNA 201 (283)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHCCC---CEEEEE-cCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEc
Confidence 34689999999999999999999886 379999 9999999888751 21 1111 112234567777777
Q ss_pred eCc
Q 024016 79 VKP 81 (274)
Q Consensus 79 v~~ 81 (274)
+|.
T Consensus 202 Tp~ 204 (283)
T PRK14027 202 TPM 204 (283)
T ss_pred CCC
Confidence 763
|
|
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0035 Score=57.94 Aligned_cols=69 Identities=26% Similarity=0.289 Sum_probs=52.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH-HHcCceecc--CchhhccCCCEEEEe--eCcc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF-ESIGVKVLS--DNNAVVEYSDVVVFS--VKPQ 82 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l-~~~g~~~~~--~~~~~~~~aDiIil~--v~~~ 82 (274)
..+||.|+|+|..|.++++.|.+.|+ +|+++ |+++....++ .+.|+.... ...+.+.++|+||.+ +|++
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~G~----~V~~~-D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~ 87 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSELGC----DVVVA-DDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPD 87 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHCCC----EEEEE-CCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCC
Confidence 45689999999999999999999998 99999 9877655443 336876542 233446788999876 3543
|
|
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0012 Score=52.14 Aligned_cols=78 Identities=15% Similarity=0.237 Sum_probs=52.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHH--hCCCCCCCcE-EEEeCCCHHHHHHHHHcCceec--cCchhhcc--CCCEEEEeeCc
Q 024016 9 ESFILGFIGAGKMAESIAKGVA--KSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVL--SDNNAVVE--YSDVVVFSVKP 81 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~--~~g~~~~~~v-~v~~~r~~~~~~~l~~~g~~~~--~~~~~~~~--~aDiIil~v~~ 81 (274)
++.++.+||+|++|.+++..-. ++|. ++ .++ |.+++..-.-. .++.+. ++....++ +.|+.|+|||.
T Consensus 83 ~~tnviiVG~GnlG~All~Y~f~~~~~~----~iv~~F-Dv~~~~VG~~~-~~v~V~~~d~le~~v~~~dv~iaiLtVPa 156 (211)
T COG2344 83 KTTNVIIVGVGNLGRALLNYNFSKKNGM----KIVAAF-DVDPDKVGTKI-GDVPVYDLDDLEKFVKKNDVEIAILTVPA 156 (211)
T ss_pred cceeEEEEccChHHHHHhcCcchhhcCc----eEEEEe-cCCHHHhCccc-CCeeeechHHHHHHHHhcCccEEEEEccH
Confidence 4568999999999999986533 4555 54 466 98887542111 234332 33444455 68999999999
Q ss_pred ccHHHHHHHhc
Q 024016 82 QVVKDVAMQIR 92 (274)
Q Consensus 82 ~~~~~v~~~i~ 92 (274)
....++.+.+.
T Consensus 157 ~~AQ~vad~Lv 167 (211)
T COG2344 157 EHAQEVADRLV 167 (211)
T ss_pred HHHHHHHHHHH
Confidence 88888776654
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0035 Score=55.35 Aligned_cols=91 Identities=16% Similarity=0.266 Sum_probs=55.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c------C-------ceeccCchhhccCCCEE
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I------G-------VKVLSDNNAVVEYSDVV 75 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~------g-------~~~~~~~~~~~~~aDiI 75 (274)
+||+|+|+ |.||..+++.|..+..+ ++...++++++..+.+.+ . + ..+.....+...++|+|
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~---~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV 77 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYF---ELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIV 77 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCc---eEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEE
Confidence 58999995 99999999988776531 554331443322222211 0 1 11111122345789999
Q ss_pred EEeeCcccHHHHHHHhccccCCCCEEEEecCC
Q 024016 76 VFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 76 il~v~~~~~~~v~~~i~~~l~~~~~vis~~~g 107 (274)
|+|+|.....++...+. ..|..+|+.++.
T Consensus 78 f~a~p~~~s~~~~~~~~---~~G~~VIDlsg~ 106 (341)
T TIGR00978 78 FSALPSEVAEEVEPKLA---EAGKPVFSNASN 106 (341)
T ss_pred EEeCCHHHHHHHHHHHH---HCCCEEEECChh
Confidence 99999998777776553 356678876554
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0029 Score=54.86 Aligned_cols=94 Identities=14% Similarity=0.240 Sum_probs=59.4
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEe-CCCHHHH-HHHHHcCceecc--CchhhccCCCEEEEeeCcccH
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAV-HSNLKRR-DAFESIGVKVLS--DNNAVVEYSDVVVFSVKPQVV 84 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~-~r~~~~~-~~l~~~g~~~~~--~~~~~~~~aDiIil~v~~~~~ 84 (274)
++||||+|+ |.+|+.|.+.|.+..+ +-..+.++. .|+..+. -.+......+-. ......+++|++|.|.+.+.-
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f-~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~ag~~~s 79 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHF-PFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAAGGSVS 79 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCC-CcceEEEEecccccCCccccccCccccCccccccccccccCCEEEEeCchHHH
Confidence 368999965 9999999999988644 323344441 3433222 223322222222 122335689999999988877
Q ss_pred HHHHHHhccccCCCCEEEEecCC
Q 024016 85 KDVAMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~~g 107 (274)
+++..++. ..|.+|||.++.
T Consensus 80 ~~~~p~~~---~~G~~VIdnsSa 99 (334)
T COG0136 80 KEVEPKAA---EAGCVVIDNSSA 99 (334)
T ss_pred HHHHHHHH---HcCCEEEeCCcc
Confidence 77777765 467888887554
|
|
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0046 Score=56.94 Aligned_cols=68 Identities=18% Similarity=0.298 Sum_probs=51.3
Q ss_pred CCCCCeEEEEcccHHHHH-HHHHHHhCCCCCCCcEEEEeCCCHH-HHHHHHHcCceec-cCchhhccCCCEEEEee
Q 024016 7 PAESFILGFIGAGKMAES-IAKGVAKSGVLPPDRICTAVHSNLK-RRDAFESIGVKVL-SDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~-~a~~L~~~g~~~~~~v~v~~~r~~~-~~~~l~~~g~~~~-~~~~~~~~~aDiIil~v 79 (274)
.-+.++|.|||+|..|.+ +|+.|.+.|+ +|+++ |.++. ..+.|.+.|+.+. ....+.+.++|+||.+-
T Consensus 4 ~~~~~~v~viG~G~sG~s~~a~~L~~~G~----~V~~~-D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~sp 74 (461)
T PRK00421 4 LRRIKRIHFVGIGGIGMSGLAEVLLNLGY----KVSGS-DLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSS 74 (461)
T ss_pred cCCCCEEEEEEEchhhHHHHHHHHHhCCC----eEEEE-CCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECC
Confidence 335578999999999999 8999999999 99999 86542 3445666787653 22334566899998864
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0047 Score=57.32 Aligned_cols=65 Identities=18% Similarity=0.186 Sum_probs=52.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceecc--CchhhccCCCEEEEee
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLS--DNNAVVEYSDVVVFSV 79 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~--~~~~~~~~aDiIil~v 79 (274)
.++|.|+|+|..|.+.++.|.+.|+ +|+++ |+++.+.+.+.+.|+.... ...+.++++|+||.+-
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~----~v~~~-D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~Sp 78 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGA----RPTVC-DDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSP 78 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECC
Confidence 4689999999999999999999998 99999 9887766666667876532 2334567899999875
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0048 Score=52.68 Aligned_cols=73 Identities=12% Similarity=0.198 Sum_probs=56.2
Q ss_pred CCCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee-CcccH
Q 024016 7 PAESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV-KPQVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~G~-mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v-~~~~~ 84 (274)
+...+++.|||-++ +|.+++.-|.+.|. .|+++ +... .+..+.+++||+||.++ .|..+
T Consensus 161 ~l~Gk~vvViGrs~iVGkPla~lL~~~~a----tVtv~-hs~T--------------~~l~~~~~~ADIvv~AvG~p~~i 221 (287)
T PRK14176 161 DIEGKNAVIVGHSNVVGKPMAAMLLNRNA----TVSVC-HVFT--------------DDLKKYTLDADILVVATGVKHLI 221 (287)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHCCC----EEEEE-eccC--------------CCHHHHHhhCCEEEEccCCcccc
Confidence 44568999999999 99999999999887 99999 6321 24566788999999998 45543
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
.. ..+++|.+||++
T Consensus 222 ~~------~~vk~gavVIDv 235 (287)
T PRK14176 222 KA------DMVKEGAVIFDV 235 (287)
T ss_pred CH------HHcCCCcEEEEe
Confidence 21 246789999986
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0056 Score=50.91 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=28.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS 46 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r 46 (274)
..||.|||+|.+|+.++++|...|. .+++++ |.
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gv---g~i~lv-D~ 53 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGV---GKLGLV-DD 53 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC---CEEEEE-cC
Confidence 4699999999999999999999997 266666 44
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0046 Score=44.88 Aligned_cols=81 Identities=15% Similarity=0.240 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH---HcCceeccCchhhccCCCEEEEeeCcccHHHH-HHHhccccC
Q 024016 21 MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE---SIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV-AMQIRPLLS 96 (274)
Q Consensus 21 mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~---~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v-~~~i~~~l~ 96 (274)
-+..+++.|.+.|. +|.+| |..-....... ..+++..++..+..+++|.|+++++.+...++ .+++...+.
T Consensus 18 p~~~l~~~L~~~g~----~V~~~-DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~~f~~l~~~~~~~~~~ 92 (106)
T PF03720_consen 18 PALELIEELKERGA----EVSVY-DPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHDEFRELDWEEIAKLMR 92 (106)
T ss_dssp HHHHHHHHHHHTT-----EEEEE--TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--GGGGCCGHHHHHHHSC
T ss_pred HHHHHHHHHHHCCC----EEEEE-CCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCHHHhccCHHHHHHhcC
Confidence 35568899999998 99999 88665444333 25788888888999999999999987776652 345555566
Q ss_pred CCCEEEEecC
Q 024016 97 RKKLLVSVAA 106 (274)
Q Consensus 97 ~~~~vis~~~ 106 (274)
++++|+++-+
T Consensus 93 ~~~~iiD~~~ 102 (106)
T PF03720_consen 93 KPPVIIDGRN 102 (106)
T ss_dssp SSEEEEESSS
T ss_pred CCCEEEECcc
Confidence 7778887644
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B .... |
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0064 Score=53.94 Aligned_cols=94 Identities=21% Similarity=0.237 Sum_probs=58.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC----------H------------HHHHHHHH----c--Ccee
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN----------L------------KRRDAFES----I--GVKV 61 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~----------~------------~~~~~l~~----~--g~~~ 61 (274)
..||+|||+|-.|+.++..|.+.|. .+++++ |.+ + .|++.+++ . ++..
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GV---geI~LV-D~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~I~~ 251 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPV---REIHLF-DGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRGIVP 251 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCC---CEEEEE-CCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCeEEE
Confidence 4689999999999999999999996 256666 432 1 22332322 1 2322
Q ss_pred c-----cCchhhccCCCEEEEeeCcccHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 62 L-----SDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 62 ~-----~~~~~~~~~aDiIil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
. .+..+.+.++|+||.|+.....+.++.+.... .+..+|++.-++.
T Consensus 252 ~~~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~--~gIP~Id~G~~l~ 302 (393)
T PRK06153 252 HPEYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYLEA--LGIPFIDVGMGLE 302 (393)
T ss_pred EeecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHH--cCCCEEEeeecce
Confidence 1 12223567899999999877777766554422 3455776544443
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.019 Score=47.35 Aligned_cols=84 Identities=14% Similarity=0.182 Sum_probs=58.9
Q ss_pred CCCCCC--CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHHc-CceeccC--chhhccCCCEEEE
Q 024016 4 FPIPAE--SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESI-GVKVLSD--NNAVVEYSDVVVF 77 (274)
Q Consensus 4 ~~~~~~--~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-~~~~~l~~~-g~~~~~~--~~~~~~~aDiIil 77 (274)
||...+ .++|.|||.|.++..=+..|++.|. +|+|+ .... +..+.+.+. .+++... ..+.++++++||.
T Consensus 17 ~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA----~VtVV-ap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LVia 91 (223)
T PRK05562 17 MFISLLSNKIKVLIIGGGKAAFIKGKTFLKKGC----YVYIL-SKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVI 91 (223)
T ss_pred eeeEEECCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-cCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEE
Confidence 444443 5689999999999999999999998 99999 6543 234445443 3433221 1234678999999
Q ss_pred eeCcccHHHHHHHhc
Q 024016 78 SVKPQVVKDVAMQIR 92 (274)
Q Consensus 78 ~v~~~~~~~v~~~i~ 92 (274)
|+.+..+..-+....
T Consensus 92 ATdD~~vN~~I~~~a 106 (223)
T PRK05562 92 ATDDEKLNNKIRKHC 106 (223)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999887776665554
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0053 Score=53.03 Aligned_cols=81 Identities=6% Similarity=0.153 Sum_probs=55.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHHHH
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAM 89 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~~ 89 (274)
.||+|+|. |-.|.-+.+.|..+.++ ++.....++. ... .+..++.+++|++|+|+|.....++..
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~---el~~l~s~~~----------~~~-~~~~~~~~~~D~vFlalp~~~s~~~~~ 67 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDI---ELLSIAPDRR----------KDA-AERAKLLNAADVAILCLPDDAAREAVS 67 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCe---EEEEEecccc----------cCc-CCHhHhhcCCCEEEECCCHHHHHHHHH
Confidence 48999976 99999999988776542 4433313321 111 134456678999999999998888777
Q ss_pred HhccccCCCCEEEEecCCC
Q 024016 90 QIRPLLSRKKLLVSVAAGV 108 (274)
Q Consensus 90 ~i~~~l~~~~~vis~~~g~ 108 (274)
.+. ..|..||+.++..
T Consensus 68 ~~~---~~g~~VIDlSadf 83 (310)
T TIGR01851 68 LVD---NPNTCIIDASTAY 83 (310)
T ss_pred HHH---hCCCEEEECChHH
Confidence 654 3677899886543
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.007 Score=49.13 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=29.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
..||.|||+|.+|+.++++|...|. .+++++ |.+
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GV---g~i~lv-D~d 54 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGI---GSLTIL-DDR 54 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCC---CEEEEE-ECC
Confidence 4689999999999999999999997 367777 544
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0036 Score=48.89 Aligned_cols=73 Identities=18% Similarity=0.310 Sum_probs=49.8
Q ss_pred CCCCCeEEEEccc-HHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccH
Q 024016 7 PAESFILGFIGAG-KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~G-~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~ 84 (274)
+.+.+++.|||-+ .+|.+++.-|.+.|. .|+++ +... .+..+.+++||+||.++. |..+
T Consensus 33 ~l~Gk~v~VvGrs~~VG~Pla~lL~~~~a----tVt~~-h~~T--------------~~l~~~~~~ADIVVsa~G~~~~i 93 (160)
T PF02882_consen 33 DLEGKKVVVVGRSNIVGKPLAMLLLNKGA----TVTIC-HSKT--------------KNLQEITRRADIVVSAVGKPNLI 93 (160)
T ss_dssp STTT-EEEEE-TTTTTHHHHHHHHHHTT-----EEEEE--TTS--------------SSHHHHHTTSSEEEE-SSSTT-B
T ss_pred CCCCCEEEEECCcCCCChHHHHHHHhCCC----eEEec-cCCC--------------CcccceeeeccEEeeeecccccc
Confidence 4566899999987 599999999999988 89888 5442 245667889999999995 4433
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
+ ...+++|.+||++
T Consensus 94 ~------~~~ik~gavVIDv 107 (160)
T PF02882_consen 94 K------ADWIKPGAVVIDV 107 (160)
T ss_dssp -------GGGS-TTEEEEE-
T ss_pred c------cccccCCcEEEec
Confidence 2 1246899999986
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0056 Score=56.38 Aligned_cols=65 Identities=15% Similarity=0.237 Sum_probs=49.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH-----HHHHHHHcCceec--cCchhhccCCCEEEEee
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-----RRDAFESIGVKVL--SDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~-----~~~~l~~~g~~~~--~~~~~~~~~aDiIil~v 79 (274)
.+||+|+|.|.-|.++++.|.+.|+ +|+++ |+++. ..+.+.+.|+.+. ....+.+.++|+||.+-
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~----~V~~~-D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Sp 85 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGA----KVTAF-DKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTP 85 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCC----EEEEE-CCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECC
Confidence 4689999999999999999999999 99999 87642 1245666787653 22234467899998873
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0076 Score=51.45 Aligned_cols=73 Identities=19% Similarity=0.323 Sum_probs=55.3
Q ss_pred CCCCCeEEEEccc-HHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccH
Q 024016 7 PAESFILGFIGAG-KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~G-~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~ 84 (274)
+...++|.|||-| .+|.+++.-|.+.|. .|+++ +.... +..+.+++||+||.++. |..+
T Consensus 154 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~gA----tVtv~-hs~t~--------------~l~~~~~~ADIvV~AvG~p~~i 214 (285)
T PRK14191 154 EIKGKDVVIIGASNIVGKPLAMLMLNAGA----SVSVC-HILTK--------------DLSFYTQNADIVCVGVGKPDLI 214 (285)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCC----EEEEE-eCCcH--------------HHHHHHHhCCEEEEecCCCCcC
Confidence 4456899999999 999999999999987 89988 53321 23467889999999995 4433
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
.. .++++|.+||++
T Consensus 215 ~~------~~vk~GavVIDv 228 (285)
T PRK14191 215 KA------SMVKKGAVVVDI 228 (285)
T ss_pred CH------HHcCCCcEEEEe
Confidence 21 235799999986
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0049 Score=54.64 Aligned_cols=92 Identities=12% Similarity=0.131 Sum_probs=58.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc-C--ceecc-CchhhccCCCEEEEeeCcccHH
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-G--VKVLS-DNNAVVEYSDVVVFSVKPQVVK 85 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~-g--~~~~~-~~~~~~~~aDiIil~v~~~~~~ 85 (274)
++|+|||+ |..|.-|.+.++++..++..++..+ ..+. ........ | ..+.. ...+...++|++|+|+|.....
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~-ss~~-sg~~~~~f~g~~~~v~~~~~~~~~~~~Divf~a~~~~~s~ 79 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFF-STSQ-AGGAAPSFGGKEGTLQDAFDIDALKKLDIIITCQGGDYTN 79 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEe-cchh-hCCcccccCCCcceEEecCChhHhcCCCEEEECCCHHHHH
Confidence 68999988 9999999986666554444446666 4332 22222221 1 22221 1123457899999999999888
Q ss_pred HHHHHhccccCCC--CEEEEecCC
Q 024016 86 DVAMQIRPLLSRK--KLLVSVAAG 107 (274)
Q Consensus 86 ~v~~~i~~~l~~~--~~vis~~~g 107 (274)
++..++.. .| .+||+.++.
T Consensus 80 ~~~~~~~~---aG~~~~VID~Ss~ 100 (369)
T PRK06598 80 EVYPKLRA---AGWQGYWIDAAST 100 (369)
T ss_pred HHHHHHHh---CCCCeEEEECChH
Confidence 88776643 45 568887654
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.012 Score=52.17 Aligned_cols=83 Identities=17% Similarity=0.197 Sum_probs=56.3
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCch---------hhc--cCCCEEEEee
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNN---------AVV--EYSDVVVFSV 79 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~---------~~~--~~aDiIil~v 79 (274)
++.|+|+|.+|...+..+...|. .+|++. |+++++++..++ .|.....++. +.. ..+|++|-|+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga---~~Viv~-d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGA---SVVIVV-DRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAV 246 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCC---ceEEEe-CCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence 79999999999987776666775 388899 999999988877 5655433321 122 2589999999
Q ss_pred C-cccHHHHHHHhccccCCCCEEE
Q 024016 80 K-PQVVKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 80 ~-~~~~~~v~~~i~~~l~~~~~vi 102 (274)
- +..+.+.+ ..++++-.++
T Consensus 247 G~~~~~~~ai----~~~r~gG~v~ 266 (350)
T COG1063 247 GSPPALDQAL----EALRPGGTVV 266 (350)
T ss_pred CCHHHHHHHH----HHhcCCCEEE
Confidence 6 22233333 3344554444
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0075 Score=50.71 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=28.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS 46 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r 46 (274)
..||.|||+|.+|+.++++|...|. .+++++ |.
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gv---g~i~lv-D~ 64 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGV---GTLTLV-DF 64 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---CEEEEE-cC
Confidence 4699999999999999999999996 266666 54
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0082 Score=53.80 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=30.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
+..||.|||+|.+|+.++..|...|. .+++++ |++
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gv---g~i~lv-D~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGV---GTLGIV-DHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCC---CeEEEE-eCC
Confidence 34689999999999999999999997 378888 776
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0089 Score=50.08 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=29.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
..||.|+|+|.+|+.++..|...|. .+++++ |.+.
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gv---g~i~lv-D~D~ 58 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGV---GNLTLL-DFDT 58 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCC---CEEEEE-eCCc
Confidence 4689999999999999999999996 367777 6543
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.016 Score=43.14 Aligned_cols=89 Identities=20% Similarity=0.178 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHHHHHH-------Hh
Q 024016 183 PAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHEL-------EK 252 (274)
Q Consensus 183 ~~~~~~~~~~l~e~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~l~~l-------~~ 252 (274)
+.+++..+.++.|+ +++.|+|++++++++..+..++..+-. ..|..+.+..+.|++......+.+ ++
T Consensus 11 N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~---~~~~~~~~~~~~~~f~l~~~~KDl~l~~~~a~~ 87 (122)
T PF14833_consen 11 NLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKN---RAPRMILNGDFDPGFSLDLARKDLRLALDLAKE 87 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHH---HHHHHHHTTTTCSSSBHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHh---hhhhhhhcccCCccchhHhhccHHHHHHHHHHH
Confidence 34444455556665 579999999999999988777654432 234457777789998877765554 55
Q ss_pred CCHHHHHHHHHHHHHHHHhhcC
Q 024016 253 SGFRGILMNAVVAAAKRSRELS 274 (274)
Q Consensus 253 ~~~~~~~~~a~~~~~~r~~~~~ 274 (274)
.+++-.+.+++.+.|+++.+.+
T Consensus 88 ~g~~~p~~~~~~~~~~~a~~~g 109 (122)
T PF14833_consen 88 AGVPLPLGSAARQLYQAAKAQG 109 (122)
T ss_dssp TT---HHHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHHHHhcC
Confidence 6999999999999999988653
|
... |
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0091 Score=51.27 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=21.9
Q ss_pred eEEEEcccHHHHHHHHHHHhCCC
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGV 34 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~ 34 (274)
||.|||+|.+|+.+++.|...|.
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGV 23 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGV 23 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC
Confidence 68999999999999999999996
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.015 Score=47.21 Aligned_cols=34 Identities=32% Similarity=0.467 Sum_probs=29.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
..||.|||+|.+|+.++++|...|. .+++++ |.+
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GV---g~i~lv-D~d 52 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGI---DSITIV-DHR 52 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCC---CEEEEE-ECC
Confidence 4689999999999999999999997 367777 544
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.014 Score=48.70 Aligned_cols=41 Identities=20% Similarity=0.299 Sum_probs=33.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF 54 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l 54 (274)
..||.|||+|..|+.++.+|...|. .+++++ |.+.-....+
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gv---g~i~lv-D~D~ve~sNL 67 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGV---GRILLI-DEQTPELSNL 67 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC---CEEEEE-cCCccChhhh
Confidence 4689999999999999999999997 378888 7765443333
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.011 Score=52.53 Aligned_cols=79 Identities=19% Similarity=0.197 Sum_probs=52.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------------------HHHHH----HHH--cCceec--
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRDA----FES--IGVKVL-- 62 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-------------------~~~~~----l~~--~g~~~~-- 62 (274)
..||.|||+|.+|+.++.+|...|. .+++++ |.+. .|++. +.+ ..+.+.
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gv---g~i~lv-D~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~ 103 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGV---GHITII-DDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVS 103 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---CeEEEE-eCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEE
Confidence 4699999999999999999999997 367776 5543 12222 222 223221
Q ss_pred ------cCchhhccCCCEEEEeeCcccHHHHHHHhc
Q 024016 63 ------SDNNAVVEYSDVVVFSVKPQVVKDVAMQIR 92 (274)
Q Consensus 63 ------~~~~~~~~~aDiIil~v~~~~~~~v~~~i~ 92 (274)
.+..+.++++|+||.|+.....+.++....
T Consensus 104 ~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c 139 (355)
T PRK05597 104 VRRLTWSNALDELRDADVILDGSDNFDTRHLASWAA 139 (355)
T ss_pred EeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 112356789999999997666666665543
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.016 Score=44.23 Aligned_cols=71 Identities=11% Similarity=0.122 Sum_probs=41.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHHH
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~ 88 (274)
.++|.|+|- ...|..++..|.+.|. .|+++ +++. .+..+.+++||+|+.++....+ +
T Consensus 28 gk~v~VvGrs~~vG~pla~lL~~~ga----tV~~~-~~~t--------------~~l~~~v~~ADIVvsAtg~~~~---i 85 (140)
T cd05212 28 GKKVLVVGRSGIVGAPLQCLLQRDGA----TVYSC-DWKT--------------IQLQSKVHDADVVVVGSPKPEK---V 85 (140)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC----EEEEe-CCCC--------------cCHHHHHhhCCEEEEecCCCCc---c
Confidence 345555543 3445555555554444 45444 3221 1556788999999999953322 2
Q ss_pred HHhccccCCCCEEEEe
Q 024016 89 MQIRPLLSRKKLLVSV 104 (274)
Q Consensus 89 ~~i~~~l~~~~~vis~ 104 (274)
+ ...+++|.+++++
T Consensus 86 ~--~~~ikpGa~Vidv 99 (140)
T cd05212 86 P--TEWIKPGATVINC 99 (140)
T ss_pred C--HHHcCCCCEEEEc
Confidence 1 1246899998876
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.014 Score=50.30 Aligned_cols=91 Identities=16% Similarity=0.210 Sum_probs=66.8
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCc-EEEEeCCC--HHHHHHHHHcCceeccCchhhccC--CCEEEEeeCcc
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDR-ICTAVHSN--LKRRDAFESIGVKVLSDNNAVVEY--SDVVVFSVKPQ 82 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~-v~v~~~r~--~~~~~~l~~~g~~~~~~~~~~~~~--aDiIil~v~~~ 82 (274)
++.||.|.|. |.+|..+.++|.+.|+ + ++.. ++. .+.. .|+..+.+..++-+. .|+.++++|++
T Consensus 7 ~~~~~~v~~~~~~~g~~~l~~l~~~g~----~~v~pV-np~~~~~~v-----~G~~~y~sv~dlp~~~~~DlAvi~vp~~ 76 (291)
T PRK05678 7 KDTKVIVQGITGKQGTFHTEQMLAYGT----NIVGGV-TPGKGGTTV-----LGLPVFNTVAEAVEATGANASVIYVPPP 76 (291)
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHCCC----CEEEEE-CCCCCCCeE-----eCeeccCCHHHHhhccCCCEEEEEcCHH
Confidence 3568999998 8899999999999888 4 3344 554 2221 488888888887776 89999999999
Q ss_pred cHHHHHHHhccccCCCCEEEEecCCCCHH
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSVAAGVKLK 111 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~~~g~~~~ 111 (274)
.+.+++++....- - +.+|-.++|...+
T Consensus 77 ~v~~~l~e~~~~g-v-k~avI~s~Gf~~~ 103 (291)
T PRK05678 77 FAADAILEAIDAG-I-DLIVCITEGIPVL 103 (291)
T ss_pred HHHHHHHHHHHCC-C-CEEEEECCCCCHH
Confidence 9999998865421 2 2333355777654
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.01 Score=54.45 Aligned_cols=66 Identities=18% Similarity=0.180 Sum_probs=48.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH----HHHHHHHcCceec--cCchhhccC-CCEEEEee
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK----RRDAFESIGVKVL--SDNNAVVEY-SDVVVFSV 79 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~----~~~~l~~~g~~~~--~~~~~~~~~-aDiIil~v 79 (274)
+.++|.|+|.|.+|.++++.|.+.|+ +|+++ +++.. ..+.+.+.|+.+. .+..+...+ +|+||..-
T Consensus 4 ~~k~v~v~G~g~~G~s~a~~l~~~G~----~V~~~-d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~ 76 (447)
T PRK02472 4 QNKKVLVLGLAKSGYAAAKLLHKLGA----NVTVN-DGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNP 76 (447)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCC----EEEEE-cCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECC
Confidence 35689999999999999999999999 99999 87642 2244555676653 234444444 89888864
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.014 Score=52.04 Aligned_cols=79 Identities=16% Similarity=0.201 Sum_probs=53.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------------------HHHHHHH----H--cCcee--c
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRDAFE----S--IGVKV--L 62 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-------------------~~~~~l~----~--~g~~~--~ 62 (274)
..+|.|||+|.+|+.++..|...|. .+++++ |.+. .|++.++ + ..+++ .
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~Gv---g~i~iv-D~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~ 116 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGV---GTITLI-DDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNAL 116 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC---CEEEEE-eCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEe
Confidence 4689999999999999999999996 267777 5541 1222222 2 12221 1
Q ss_pred ------cCchhhccCCCEEEEeeCcccHHHHHHHhc
Q 024016 63 ------SDNNAVVEYSDVVVFSVKPQVVKDVAMQIR 92 (274)
Q Consensus 63 ------~~~~~~~~~aDiIil~v~~~~~~~v~~~i~ 92 (274)
.+..+.++++|+||-|+.....+.++.++.
T Consensus 117 ~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~ 152 (370)
T PRK05600 117 RERLTAENAVELLNGVDLVLDGSDSFATKFLVADAA 152 (370)
T ss_pred eeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 123456788999999998776666666554
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0093 Score=55.84 Aligned_cols=44 Identities=23% Similarity=0.417 Sum_probs=39.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~ 56 (274)
++.+++.|+|+|.+|.+++..|.+.|. +|+++ +|+.++++.+.+
T Consensus 377 ~~~k~vlIlGaGGagrAia~~L~~~G~----~V~i~-nR~~e~a~~la~ 420 (529)
T PLN02520 377 LAGKLFVVIGAGGAGKALAYGAKEKGA----RVVIA-NRTYERAKELAD 420 (529)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHH
Confidence 445789999999999999999999998 99999 999999888875
|
|
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0051 Score=49.07 Aligned_cols=72 Identities=19% Similarity=0.270 Sum_probs=47.2
Q ss_pred eEEEEcccHHHHHH--HHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--------cC----ceeccCchhhccCCCEEEE
Q 024016 12 ILGFIGAGKMAESI--AKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------IG----VKVLSDNNAVVEYSDVVVF 77 (274)
Q Consensus 12 ~IgiIG~G~mG~~~--a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~aDiIil 77 (274)
||+|||+|..-.+. ..-+.....++..+|.++ |+++++++...+ .| +..++|..+++++||.||.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~-Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~ 79 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLM-DIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVIN 79 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE--SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEE-cCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEE
Confidence 79999999876553 333333333445588999 999998764322 23 3456888999999999999
Q ss_pred eeCcccH
Q 024016 78 SVKPQVV 84 (274)
Q Consensus 78 ~v~~~~~ 84 (274)
++...-.
T Consensus 80 ~irvGg~ 86 (183)
T PF02056_consen 80 QIRVGGL 86 (183)
T ss_dssp ---TTHH
T ss_pred Eeeecch
Confidence 9976543
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0079 Score=50.87 Aligned_cols=71 Identities=18% Similarity=0.353 Sum_probs=55.6
Q ss_pred CCCeEEEEcccH-HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee-CcccHHH
Q 024016 9 ESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV-KPQVVKD 86 (274)
Q Consensus 9 ~~~~IgiIG~G~-mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v-~~~~~~~ 86 (274)
..+++.|||-++ +|.+|+.-|++.++ .|+++ ++.. .+..+.+++||+++.++ +|..+.
T Consensus 155 ~Gk~~vVVGrS~iVGkPla~lL~~~na----TVtvc-Hs~T--------------~~l~~~~k~ADIvv~AvG~p~~i~- 214 (283)
T COG0190 155 RGKNVVVVGRSNIVGKPLALLLLNANA----TVTVC-HSRT--------------KDLASITKNADIVVVAVGKPHFIK- 214 (283)
T ss_pred CCCEEEEECCCCcCcHHHHHHHHhCCC----EEEEE-cCCC--------------CCHHHHhhhCCEEEEecCCccccc-
Confidence 457899999876 59999999999888 99999 5432 24566788999999999 566554
Q ss_pred HHHHhccccCCCCEEEEe
Q 024016 87 VAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~ 104 (274)
.+.+++|.++|++
T Consensus 215 -----~d~vk~gavVIDV 227 (283)
T COG0190 215 -----ADMVKPGAVVIDV 227 (283)
T ss_pred -----cccccCCCEEEec
Confidence 3456899999986
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.012 Score=54.45 Aligned_cols=66 Identities=21% Similarity=0.268 Sum_probs=48.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH-H----HHHHHHcCceeccC-chhhccCCCEEEEee
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-R----RDAFESIGVKVLSD-NNAVVEYSDVVVFSV 79 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~-~----~~~l~~~g~~~~~~-~~~~~~~aDiIil~v 79 (274)
..++|.|||.|..|.++|..|.+.|+ +|+++ ++++. . .+.+.+.|+.+... ..+....+|+||++.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~----~V~~~-d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~ 86 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGA----RVTVV-DDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSP 86 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECC
Confidence 45689999999999999999999999 99999 85542 2 23455578776422 122345699999986
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.032 Score=47.20 Aligned_cols=86 Identities=15% Similarity=0.181 Sum_probs=58.9
Q ss_pred CCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---Cc
Q 024016 6 IPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KP 81 (274)
Q Consensus 6 ~~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~ 81 (274)
.+++++++-|-|+ +.+|..+|+.|.++|+ +|++. .|+.++++++++. ..+.. ..++-++.+ .+
T Consensus 2 ~~~~~~~~lITGASsGIG~~~A~~lA~~g~----~liLv-aR~~~kL~~la~~-------l~~~~-~v~v~vi~~DLs~~ 68 (265)
T COG0300 2 GPMKGKTALITGASSGIGAELAKQLARRGY----NLILV-ARREDKLEALAKE-------LEDKT-GVEVEVIPADLSDP 68 (265)
T ss_pred CCCCCcEEEEECCCchHHHHHHHHHHHCCC----EEEEE-eCcHHHHHHHHHH-------HHHhh-CceEEEEECcCCCh
Confidence 4556678888887 9999999999999999 99999 9999999888751 11100 122333333 46
Q ss_pred ccHHHHHHHhccccCCCCEEEEe
Q 024016 82 QVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 82 ~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
+.+..+..++.....+=.++|..
T Consensus 69 ~~~~~l~~~l~~~~~~IdvLVNN 91 (265)
T COG0300 69 EALERLEDELKERGGPIDVLVNN 91 (265)
T ss_pred hHHHHHHHHHHhcCCcccEEEEC
Confidence 67777777776542233466754
|
|
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.011 Score=55.06 Aligned_cols=68 Identities=19% Similarity=0.308 Sum_probs=49.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH--HHHHHHHc--Cceecc--CchhhccCCCEEEEe--eC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK--RRDAFESI--GVKVLS--DNNAVVEYSDVVVFS--VK 80 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~--~~~~l~~~--g~~~~~--~~~~~~~~aDiIil~--v~ 80 (274)
+.++|.|+|.|..|.++|+.|.+.|+ +|+++ |.+.. ..+.|.+. |+.+.. ...+.+.++|+||.. +|
T Consensus 6 ~~~~i~v~G~G~sG~s~a~~L~~~G~----~v~~~-D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~ 80 (498)
T PRK02006 6 QGPMVLVLGLGESGLAMARWCARHGA----RLRVA-DTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLS 80 (498)
T ss_pred CCCEEEEEeecHhHHHHHHHHHHCCC----EEEEE-cCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCC
Confidence 35689999999999999999999999 99999 86542 33446554 544322 234456789999987 45
Q ss_pred c
Q 024016 81 P 81 (274)
Q Consensus 81 ~ 81 (274)
+
T Consensus 81 ~ 81 (498)
T PRK02006 81 P 81 (498)
T ss_pred C
Confidence 4
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.012 Score=56.52 Aligned_cols=67 Identities=24% Similarity=0.325 Sum_probs=50.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH---------------------HHHHHHHcCceecc----
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK---------------------RRDAFESIGVKVLS---- 63 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~---------------------~~~~l~~~g~~~~~---- 63 (274)
..+||.|||.|..|.+.|..|.+.|+ +|++| ++.+. ..+.+.+.|+.+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~----~Vtv~-e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v 383 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGV----QVDVF-DRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEI 383 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCC----cEEEE-eCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCcc
Confidence 46799999999999999999999999 99999 87752 23445556765421
Q ss_pred ----CchhhccCCCEEEEeeC
Q 024016 64 ----DNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 64 ----~~~~~~~~aDiIil~v~ 80 (274)
+..+.....|.||+++-
T Consensus 384 ~~~~~~~~l~~~~DaV~latG 404 (639)
T PRK12809 384 GRDITFSDLTSEYDAVFIGVG 404 (639)
T ss_pred CCcCCHHHHHhcCCEEEEeCC
Confidence 12244567899999984
|
|
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.012 Score=50.11 Aligned_cols=73 Identities=14% Similarity=0.280 Sum_probs=55.6
Q ss_pred CCCCCeEEEEccc-HHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccH
Q 024016 7 PAESFILGFIGAG-KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~G-~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~ 84 (274)
+...+++.|||-+ .+|.+++.-|.+.|. .|+++ +... .+..+.+++||+||.++. |..+
T Consensus 154 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~A----tVti~-hs~T--------------~~l~~~~~~ADIvV~AvGkp~~i 214 (281)
T PRK14183 154 DVKGKDVCVVGASNIVGKPMAALLLNANA----TVDIC-HIFT--------------KDLKAHTKKADIVIVGVGKPNLI 214 (281)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCC----EEEEe-CCCC--------------cCHHHHHhhCCEEEEecCccccc
Confidence 4456899999998 899999999998887 89988 5321 234567899999999994 5543
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
.. ..+++|.+||++
T Consensus 215 ~~------~~vk~gavvIDv 228 (281)
T PRK14183 215 TE------DMVKEGAIVIDI 228 (281)
T ss_pred CH------HHcCCCcEEEEe
Confidence 21 236799999986
|
|
| >PRK10637 cysG siroheme synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.025 Score=52.07 Aligned_cols=83 Identities=17% Similarity=0.296 Sum_probs=59.2
Q ss_pred CCCCCCCC--CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHHcC-ceeccC--chhhccCCCE
Q 024016 1 MDAFPIPA--ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIG-VKVLSD--NNAVVEYSDV 74 (274)
Q Consensus 1 ~~~~~~~~--~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-~~~~~l~~~g-~~~~~~--~~~~~~~aDi 74 (274)
|..+|... +.++|.|||.|.++..=++.|++.|. +|+++ .+.- +..+.+.+.| ++.... ..+.++++++
T Consensus 1 m~~~P~~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga----~v~vi-sp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~l 75 (457)
T PRK10637 1 MDHLPIFCQLRDRDCLLVGGGDVAERKARLLLDAGA----RLTVN-ALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWL 75 (457)
T ss_pred CCeeceEEEcCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-cCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEE
Confidence 67788774 56899999999999999999999998 99999 6543 2344444433 333221 2345789999
Q ss_pred EEEeeCcccHHHHH
Q 024016 75 VVFSVKPQVVKDVA 88 (274)
Q Consensus 75 Iil~v~~~~~~~v~ 88 (274)
||.|+.+..+..-+
T Consensus 76 v~~at~d~~~n~~i 89 (457)
T PRK10637 76 AIAATDDDAVNQRV 89 (457)
T ss_pred EEECCCCHHHhHHH
Confidence 99999876654433
|
|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.013 Score=49.89 Aligned_cols=75 Identities=12% Similarity=0.196 Sum_probs=56.7
Q ss_pred CCCCCCeEEEEccc-HHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-ccc
Q 024016 6 IPAESFILGFIGAG-KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQV 83 (274)
Q Consensus 6 ~~~~~~~IgiIG~G-~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~ 83 (274)
.+...+++.|||-+ ..|.+++..|.+.|. .|+++ .++. .+..+.+++||+||.+++ +..
T Consensus 148 i~l~Gk~V~ViGrs~~vGrpla~lL~~~~a----tVtv~-hs~t--------------~~L~~~~~~ADIvI~Avgk~~l 208 (279)
T PRK14178 148 ISIAGKRAVVVGRSIDVGRPMAALLLNADA----TVTIC-HSKT--------------ENLKAELRQADILVSAAGKAGF 208 (279)
T ss_pred CCCCCCEEEEECCCccccHHHHHHHHhCCC----eeEEE-ecCh--------------hHHHHHHhhCCEEEECCCcccc
Confidence 34566899999998 999999999988887 89888 6543 245567889999999996 433
Q ss_pred HHHHHHHhccccCCCCEEEEec
Q 024016 84 VKDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~~ 105 (274)
+. .+ .+++|.+||++.
T Consensus 209 v~---~~---~vk~GavVIDVg 224 (279)
T PRK14178 209 IT---PD---MVKPGATVIDVG 224 (279)
T ss_pred cC---HH---HcCCCcEEEEee
Confidence 22 12 258999999873
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.034 Score=49.20 Aligned_cols=86 Identities=13% Similarity=0.153 Sum_probs=58.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC---CHHHHHHHHHcCceeccCchh------hccCCCEEEEeeC
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS---NLKRRDAFESIGVKVLSDNNA------VVEYSDVVVFSVK 80 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r---~~~~~~~l~~~g~~~~~~~~~------~~~~aDiIil~v~ 80 (274)
..+|.|+|+|.+|...++.+...|. +|+++ +| ++++.+.+.+.|+.......+ .....|+||-|+.
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~G~----~vi~~-~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g 247 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLRGF----EVYVL-NRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATG 247 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC----eEEEE-ecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcC
Confidence 4589999999999999988888887 88888 87 677887777788764322111 1235789999886
Q ss_pred c-ccHHHHHHHhccccCCCCEEEEe
Q 024016 81 P-QVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 81 ~-~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
. ..+.+.+.- ++++..++.+
T Consensus 248 ~~~~~~~~~~~----l~~~G~~v~~ 268 (355)
T cd08230 248 VPPLAFEALPA----LAPNGVVILF 268 (355)
T ss_pred CHHHHHHHHHH----ccCCcEEEEE
Confidence 4 334444433 4455555543
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.016 Score=55.88 Aligned_cols=67 Identities=24% Similarity=0.365 Sum_probs=49.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH---------------------HHHHHHHcCceecc----
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK---------------------RRDAFESIGVKVLS---- 63 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~---------------------~~~~l~~~g~~~~~---- 63 (274)
..++|.|||.|..|.+.|..|.+.|+ +|+++ ++.+. ..+.+.+.|+.+..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~----~V~V~-E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v 400 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGV----AVTVY-DRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEV 400 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC----eEEEE-ecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEe
Confidence 45799999999999999999999999 99999 87542 23334446765432
Q ss_pred ----CchhhccCCCEEEEeeC
Q 024016 64 ----DNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 64 ----~~~~~~~~aDiIil~v~ 80 (274)
+..+....+|.||+++-
T Consensus 401 ~~~i~~~~~~~~~DavilAtG 421 (654)
T PRK12769 401 GKDISLESLLEDYDAVFVGVG 421 (654)
T ss_pred CCcCCHHHHHhcCCEEEEeCC
Confidence 11233457899999883
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0098 Score=51.58 Aligned_cols=66 Identities=17% Similarity=0.200 Sum_probs=48.9
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH---HHHHHc-C----ce-------eccCchhhccCC
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR---DAFESI-G----VK-------VLSDNNAVVEYS 72 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~---~~l~~~-g----~~-------~~~~~~~~~~~a 72 (274)
..++|.|-|+ |-+|+.+++.|++.|| .|... -|+++.- +.|.+. + .. -..+..+++++|
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY----~V~gt-VR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gc 79 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGY----TVRGT-VRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGC 79 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCC----EEEEE-EcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCC
Confidence 4579999976 9999999999999999 99988 7877652 234441 1 22 124456788999
Q ss_pred CEEEEee
Q 024016 73 DVVVFSV 79 (274)
Q Consensus 73 DiIil~v 79 (274)
|.||=+-
T Consensus 80 dgVfH~A 86 (327)
T KOG1502|consen 80 DGVFHTA 86 (327)
T ss_pred CEEEEeC
Confidence 9999654
|
|
| >COG4408 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.17 Score=43.78 Aligned_cols=152 Identities=16% Similarity=0.208 Sum_probs=91.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH---cC------------------ce---eccC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES---IG------------------VK---VLSD 64 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~---~g------------------~~---~~~~ 64 (274)
++.++-++|+|...--+|.-|...|. .++-++ +|-..+-+.+.+ .+ +. ...+
T Consensus 3 ~m~~vLllGtGpvaIQlAv~l~~h~d---~~lg~~-~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~kd 78 (431)
T COG4408 3 NMLPVLLLGTGPVAIQLAVDLSAHGD---ARLGLY-NRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIKD 78 (431)
T ss_pred cccceeEeecCcHHHHHHHHHHhccC---ceeecc-CCCCchhHHHHHHHhcCCeEEEEeccHHHHhhcCceehhHHHhh
Confidence 56789999999999999999988875 377788 764433333332 11 00 1234
Q ss_pred chhhccCCCEEEEeeCcccHHHHHHHhcc-ccCCCCEEEEecCCCCHH----HHHHhhC-CCceEEEc------------
Q 024016 65 NNAVVEYSDVVVFSVKPQVVKDVAMQIRP-LLSRKKLLVSVAAGVKLK----DLQEWTG-HSRFIRVM------------ 126 (274)
Q Consensus 65 ~~~~~~~aDiIil~v~~~~~~~v~~~i~~-~l~~~~~vis~~~g~~~~----~l~~~~~-~~~~~~~~------------ 126 (274)
++++..+-+.+|+|||.++..+|+++|.. .++.=+.+|-++..+... .+....+ ++.++++.
T Consensus 79 ~a~~~~dwqtlilav~aDaY~dvlqqi~~e~L~~vk~viLiSptfGsn~lv~~~mnk~~~daeViS~SsY~~dTk~id~~ 158 (431)
T COG4408 79 LAQAVGDWQTLILAVPADAYYDVLQQIPWEALPQVKSVILISPTFGSNLLVQNLMNKAGRDAEVISLSSYYADTKYIDAE 158 (431)
T ss_pred HHHhhchhheEEEEeecHHHHHHHhcCCHhHhccccEEEEecccccccHHHHHHHhhhCCCceEEEeehhcccceeeccc
Confidence 55666778999999999999999988753 233323444333444332 2222222 34455432
Q ss_pred -CCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCCe
Q 024016 127 -PNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI 164 (274)
Q Consensus 127 -p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~ 164 (274)
|++.-...--.-++......+....+.+..+|+..|..
T Consensus 159 ~p~~alTkavKkriYlgs~~~ns~~~e~l~~v~aq~~I~ 197 (431)
T COG4408 159 QPNRALTKAVKKRIYLGSQHGNSGSAEMLTAVLAQHGID 197 (431)
T ss_pred CcchHHHHHHhHheeeccCCCCChHHHHHHHHHHhcCCc
Confidence 23221111111233334455677788899999999964
|
|
| >PLN02775 Probable dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.056 Score=46.14 Aligned_cols=109 Identities=20% Similarity=0.268 Sum_probs=69.7
Q ss_pred CCCCCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH---HHHHcCceec--cCchhhc-----c
Q 024016 2 DAFPIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD---AFESIGVKVL--SDNNAVV-----E 70 (274)
Q Consensus 2 ~~~~~~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~---~l~~~g~~~~--~~~~~~~-----~ 70 (274)
+++|.+....||.|.|+ |+||+..++.+.+.++ ++....++.+.-.+ .+...++.+. ++..+.+ +
T Consensus 3 ~~~~~~~~~i~V~V~Ga~G~MG~~~~~av~~~~~----~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~~ 78 (286)
T PLN02775 3 STASPPGSAIPIMVNGCTGKMGHAVAEAAVSAGL----QLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKAE 78 (286)
T ss_pred CcCCCcCCCCeEEEECCCChHHHHHHHHHhcCCC----EEEEEeccccccccccceeccceeeeecCccHHHHHHHhhcc
Confidence 45666666789999998 9999999999998777 76655365543211 1222245555 6666655 2
Q ss_pred CCC-EEEEeeCcccHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhh
Q 024016 71 YSD-VVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWT 117 (274)
Q Consensus 71 ~aD-iIil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~ 117 (274)
.+| ++|=-+.|+.+.+.+..... .+..+|.-+.|.+.+.++++.
T Consensus 79 ~~~~VvIDFT~P~a~~~~~~~~~~---~g~~~VvGTTG~~~e~l~~~~ 123 (286)
T PLN02775 79 YPNLIVVDYTLPDAVNDNAELYCK---NGLPFVMGTTGGDRDRLLKDV 123 (286)
T ss_pred CCCEEEEECCChHHHHHHHHHHHH---CCCCEEEECCCCCHHHHHHHH
Confidence 478 66666677777776665443 233344445677777766554
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.044 Score=45.99 Aligned_cols=91 Identities=10% Similarity=0.009 Sum_probs=57.9
Q ss_pred CCCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---
Q 024016 4 FPIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV--- 79 (274)
Q Consensus 4 ~~~~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v--- 79 (274)
+++.++.+++-|.|+ |.+|..+++.|.+.|+ +|++. +|++++.+++.+.- .+...+.++.++.+
T Consensus 3 ~~~~~~~k~~lItGa~~gIG~~~a~~l~~~G~----~v~~~-~r~~~~~~~~~~~l-------~~~~~~~~~~~~~~Dl~ 70 (257)
T PRK09242 3 HRWRLDGQTALITGASKGIGLAIAREFLGLGA----DVLIV-ARDADALAQARDEL-------AEEFPEREVHGLAADVS 70 (257)
T ss_pred cccccCCCEEEEeCCCchHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHHHHH-------HhhCCCCeEEEEECCCC
Confidence 455556678888875 8999999999999999 99999 99987766554310 00011234444433
Q ss_pred CcccHHHHHHHhccccCCCCEEEEecC
Q 024016 80 KPQVVKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 80 ~~~~~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
.++.++.++.++...+.+=..+|++.+
T Consensus 71 ~~~~~~~~~~~~~~~~g~id~li~~ag 97 (257)
T PRK09242 71 DDEDRRAILDWVEDHWDGLHILVNNAG 97 (257)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 344566666666544444356776644
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.027 Score=51.98 Aligned_cols=67 Identities=24% Similarity=0.386 Sum_probs=49.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH---------------------HHHHHHHcCceeccC---
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK---------------------RRDAFESIGVKVLSD--- 64 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~---------------------~~~~l~~~g~~~~~~--- 64 (274)
..++|.|||.|..|...|..|.+.|+ +|+++ ++.+. ..+.+.+.|+++..+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~----~V~i~-e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v 214 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGV----QVVVF-DRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEV 214 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC----eEEEE-ecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEe
Confidence 45789999999999999999999999 99999 87641 234455567654321
Q ss_pred -----chhhccCCCEEEEeeC
Q 024016 65 -----NNAVVEYSDVVVFSVK 80 (274)
Q Consensus 65 -----~~~~~~~aDiIil~v~ 80 (274)
..+....+|.||+|+-
T Consensus 215 ~~~~~~~~~~~~~D~vilAtG 235 (467)
T TIGR01318 215 GRDISLDDLLEDYDAVFLGVG 235 (467)
T ss_pred CCccCHHHHHhcCCEEEEEeC
Confidence 1233347899999983
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.041 Score=45.80 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=29.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
+..+|.|+|+|.+|+.++.+|...|. .+++++ |.+
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GV---g~i~Lv-D~D 44 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGV---GKLTLI-DFD 44 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCC---CEEEEE-CCC
Confidence 35689999999999999999999997 367777 544
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.016 Score=48.75 Aligned_cols=67 Identities=12% Similarity=0.255 Sum_probs=46.6
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--cCceec----cC-c---hhhc-cCCCEEE
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--IGVKVL----SD-N---NAVV-EYSDVVV 76 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~--~g~~~~----~~-~---~~~~-~~aDiIi 76 (274)
++++|.|+|+ |.+|+.+++.|++.|+ +|++. .|++++...+.. .++.+. .+ . .+.+ .++|+||
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~----~V~~~-~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi 90 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGF----AVKAG-VRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVI 90 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCC----EEEEE-ecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEE
Confidence 3579999995 9999999999999999 99998 898877654432 123221 11 1 1223 4678888
Q ss_pred EeeC
Q 024016 77 FSVK 80 (274)
Q Consensus 77 l~v~ 80 (274)
.+.+
T Consensus 91 ~~~g 94 (251)
T PLN00141 91 CATG 94 (251)
T ss_pred ECCC
Confidence 7754
|
|
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.0072 Score=52.93 Aligned_cols=94 Identities=11% Similarity=0.065 Sum_probs=52.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhC------CCCCCCcE-EEEeCCCHHH-------HHHHH---HcC-cee--cc--Cchhh
Q 024016 11 FILGFIGAGKMAESIAKGVAKS------GVLPPDRI-CTAVHSNLKR-------RDAFE---SIG-VKV--LS--DNNAV 68 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~------g~~~~~~v-~v~~~r~~~~-------~~~l~---~~g-~~~--~~--~~~~~ 68 (274)
|||++||+|++|+.+++.|.+. |. ..+| .++ +++... .+++. +.| +.. .. +..++
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~--~l~VVaVs-ds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~l 77 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNN--GISVVSVS-DSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEI 77 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCC--CeEEEEEE-ECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHH
Confidence 4899999999999999998773 22 1133 344 655321 11221 112 110 11 23333
Q ss_pred c-cCCCEEEEeeCc-ccHHHHHHHhccccCCCCEEEEecCC
Q 024016 69 V-EYSDVVVFSVKP-QVVKDVAMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 69 ~-~~aDiIil~v~~-~~~~~v~~~i~~~l~~~~~vis~~~g 107 (274)
. .++|+++-|++. +.-.....-+.+.+..|+-||+...+
T Consensus 78 l~~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKg 118 (326)
T PRK06392 78 FEIKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKS 118 (326)
T ss_pred hcCCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHH
Confidence 2 368999999973 22122333344556677778866543
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.024 Score=50.98 Aligned_cols=79 Identities=15% Similarity=0.139 Sum_probs=52.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------------------HHH----HHHHH--cCcee--c
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRR----DAFES--IGVKV--L 62 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-------------------~~~----~~l~~--~g~~~--~ 62 (274)
..||.|||+|.+|+.++.+|...|. .+++++ |.+. .|+ +.+.+ ..+++ .
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~Gv---g~l~lv-D~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~ 113 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAAGI---GRIGIV-DFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLY 113 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCC---CEEEEE-CCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence 4689999999999999999999997 256666 4421 111 22222 22221 1
Q ss_pred ------cCchhhccCCCEEEEeeCcccHHHHHHHhc
Q 024016 63 ------SDNNAVVEYSDVVVFSVKPQVVKDVAMQIR 92 (274)
Q Consensus 63 ------~~~~~~~~~aDiIil~v~~~~~~~v~~~i~ 92 (274)
.+..+.+.++|+||.|+.....+.++.++.
T Consensus 114 ~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~ 149 (390)
T PRK07411 114 ETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDAC 149 (390)
T ss_pred ecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 122356788999999997766666666544
|
|
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.023 Score=48.75 Aligned_cols=92 Identities=14% Similarity=0.183 Sum_probs=65.7
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH-HHHHHHcCceeccCchhhccC--CCEEEEeeCcccHH
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-RDAFESIGVKVLSDNNAVVEY--SDVVVFSVKPQVVK 85 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~--aDiIil~v~~~~~~ 85 (274)
..||.|.|. |.+|+.+-.+|...|+ + .+| .-+|.+ .+.. .|+..+.+..++-+. .|+.++++|++.+.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~g~----~-~v~-~V~p~~~~~~v--~G~~~y~sv~dlp~~~~~Dlavi~vpa~~v~ 77 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAYGT----N-IVG-GVTPGKGGTTV--LGLPVFDSVKEAVEETGANASVIFVPAPFAA 77 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhCCC----C-EEE-EECCCCCccee--cCeeccCCHHHHhhccCCCEEEEecCHHHHH
Confidence 468999996 9999999999999998 5 344 334431 1111 588888888887765 79999999999999
Q ss_pred HHHHHhccccCCCCEEEEecCCCCHH
Q 024016 86 DVAMQIRPLLSRKKLLVSVAAGVKLK 111 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~~g~~~~ 111 (274)
+++++....- - +.+|-.++|....
T Consensus 78 ~~l~e~~~~G-v-k~avIis~Gf~e~ 101 (286)
T TIGR01019 78 DAIFEAIDAG-I-ELIVCITEGIPVH 101 (286)
T ss_pred HHHHHHHHCC-C-CEEEEECCCCCHH
Confidence 9998866431 2 2333356777643
|
ATP citrate lyases appear to form an outgroup. |
| >KOG1495 consensus Lactate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.082 Score=44.44 Aligned_cols=100 Identities=18% Similarity=0.226 Sum_probs=65.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH-HHH--cC--------ceeccCchhhccCCCEEEEe
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA-FES--IG--------VKVLSDNNAVVEYSDVVVFS 78 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~-l~~--~g--------~~~~~~~~~~~~~aDiIil~ 78 (274)
.-||.|+|.|.+|.+.+..++..|... ++.+. |-++++++- ... +| +....| ..+..+++++|+.
T Consensus 20 ~~KItVVG~G~VGmAca~siL~k~Lad--el~lv-Dv~~dklkGE~MDLqH~s~f~~~~~V~~~~D-y~~sa~S~lvIiT 95 (332)
T KOG1495|consen 20 HNKITVVGVGQVGMACAISILLKGLAD--ELVLV-DVNEDKLKGEMMDLQHGSAFLSTPNVVASKD-YSVSANSKLVIIT 95 (332)
T ss_pred CceEEEEccchHHHHHHHHHHHhhhhh--ceEEE-ecCcchhhhhhhhhccccccccCCceEecCc-ccccCCCcEEEEe
Confidence 469999999999999999999988733 78888 888876531 111 22 222223 3456789999998
Q ss_pred eC--cc--c-H-------HHHHHHhcc---ccCCCCEEEEecCCCCHHHH
Q 024016 79 VK--PQ--V-V-------KDVAMQIRP---LLSRKKLLVSVAAGVKLKDL 113 (274)
Q Consensus 79 v~--~~--~-~-------~~v~~~i~~---~l~~~~~vis~~~g~~~~~l 113 (274)
.- ++ . - -++++.+.| ...|+++++-.++++.+-+.
T Consensus 96 AGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDilTY 145 (332)
T KOG1495|consen 96 AGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDILTY 145 (332)
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHHHHH
Confidence 72 11 1 1 123333333 24788888888888775443
|
|
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.011 Score=52.13 Aligned_cols=93 Identities=15% Similarity=0.175 Sum_probs=53.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHh--------CCCCCCCcEEEEeCCCHHH-------HHHHH---H-cCc-e-ec------
Q 024016 10 SFILGFIGAGKMAESIAKGVAK--------SGVLPPDRICTAVHSNLKR-------RDAFE---S-IGV-K-VL------ 62 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~--------~g~~~~~~v~v~~~r~~~~-------~~~l~---~-~g~-~-~~------ 62 (274)
.++|+++|+|++|+.+++.|.+ .|. .-+|....+++... .+++. + .+. . ..
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~--~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~ 79 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGV--ELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVY 79 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCC--CEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhcccccccc
Confidence 3699999999999999998876 343 01333222543211 12221 1 110 0 10
Q ss_pred -cCchhhc--cCCCEEEEeeCcccHHHHHHHhccccCCCCEEEEecCC
Q 024016 63 -SDNNAVV--EYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 63 -~~~~~~~--~~aDiIil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g 107 (274)
.+..+.+ .++|+||-++.++...++.... +..|.-||+...+
T Consensus 80 ~~~~~ell~~~~~DVvVd~t~~~~a~~~~~~a---l~~G~~VVtanK~ 124 (336)
T PRK08374 80 NFSPEEIVEEIDADIVVDVTNDKNAHEWHLEA---LKEGKSVVTSNKP 124 (336)
T ss_pred CCCHHHHHhcCCCCEEEECCCcHHHHHHHHHH---HhhCCcEEECCHH
Confidence 1444555 4789999999877666666554 3456667765444
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.062 Score=45.68 Aligned_cols=35 Identities=17% Similarity=0.323 Sum_probs=28.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
+..+|.|+|+|.+|+..+.+|...|. .+++++ |.+
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GV---g~itLi-D~D 63 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGI---GAITLI-DMD 63 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCC---CEEEEE-eCC
Confidence 34689999999999999999999995 267766 543
|
|
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.02 Score=50.66 Aligned_cols=92 Identities=9% Similarity=0.119 Sum_probs=56.9
Q ss_pred CeEEEEcc-cHHHHHHHHHHH-hCCCCCCCcEEEEeCCCHH--HHHHHHHcCceecc-CchhhccCCCEEEEeeCcccHH
Q 024016 11 FILGFIGA-GKMAESIAKGVA-KSGVLPPDRICTAVHSNLK--RRDAFESIGVKVLS-DNNAVVEYSDVVVFSVKPQVVK 85 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~-~~g~~~~~~v~v~~~r~~~--~~~~l~~~g~~~~~-~~~~~~~~aDiIil~v~~~~~~ 85 (274)
++|||+|+ |.+|+.|.+.|. +..+ +..++.++ ..+.. +.-.+......+.. ++.+...+.|++|.|.+.+..+
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~f-p~~~~~~~-ss~~s~g~~~~f~~~~~~v~~~~~~~~~~~vDivffa~g~~~s~ 78 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDF-DAIRPVFF-STSQLGQAAPSFGGTTGTLQDAFDIDALKALDIIITCQGGDYTN 78 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCC-ccccEEEE-EchhhCCCcCCCCCCcceEEcCcccccccCCCEEEEcCCHHHHH
Confidence 48999998 999999999998 4444 43455555 32211 11111111122221 1223567899999999888777
Q ss_pred HHHHHhccccCCC--CEEEEecCC
Q 024016 86 DVAMQIRPLLSRK--KLLVSVAAG 107 (274)
Q Consensus 86 ~v~~~i~~~l~~~--~~vis~~~g 107 (274)
++..... ..| .+||+.++.
T Consensus 79 ~~~p~~~---~aG~~~~VIDnSSa 99 (366)
T TIGR01745 79 EIYPKLR---ESGWQGYWIDAASS 99 (366)
T ss_pred HHHHHHH---hCCCCeEEEECChh
Confidence 7766554 356 678887554
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.062 Score=45.04 Aligned_cols=84 Identities=12% Similarity=0.136 Sum_probs=53.4
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~ 84 (274)
+.++|.|.|. |.+|..+++.|++.|+ +|.+. +|++++.+.+.+. + .+ .+.++.++.. .++.+
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-i------~~--~~~~~~~~~~D~~~~~~~ 74 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQAGA----EVILN-GRDPAKLAAAAES-L------KG--QGLSAHALAFDVTDHDAV 74 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHHHH-H------Hh--cCceEEEEEccCCCHHHH
Confidence 4568988875 9999999999999999 99999 9998766554321 0 00 0122333322 34456
Q ss_pred HHHHHHhccccCCCCEEEEecC
Q 024016 85 KDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~~ 106 (274)
..++.++...+.+=..+|+..+
T Consensus 75 ~~~~~~~~~~~~~~d~li~~ag 96 (255)
T PRK07523 75 RAAIDAFEAEIGPIDILVNNAG 96 (255)
T ss_pred HHHHHHHHHhcCCCCEEEECCC
Confidence 6666665544434346676543
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.026 Score=54.38 Aligned_cols=68 Identities=16% Similarity=0.198 Sum_probs=48.8
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH---------------------HHHHHHcCceeccC--
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR---------------------RDAFESIGVKVLSD-- 64 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~---------------------~~~l~~~g~~~~~~-- 64 (274)
...++|.|||.|..|...|..|.+.|+ +|+++ ++++.. .+.+.+.|+++..+
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~----~Vtv~-e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~ 265 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGH----DVTIF-DANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTV 265 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC----cEEEE-ecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCc
Confidence 345799999999999999999999999 99999 775421 23444467654211
Q ss_pred ------chhhccCCCEEEEeeC
Q 024016 65 ------NNAVVEYSDVVVFSVK 80 (274)
Q Consensus 65 ------~~~~~~~aDiIil~v~ 80 (274)
..+....+|.||+++-
T Consensus 266 v~~dv~~~~~~~~~DaVilAtG 287 (652)
T PRK12814 266 FGRDITLEELQKEFDAVLLAVG 287 (652)
T ss_pred ccCccCHHHHHhhcCEEEEEcC
Confidence 2233345899999983
|
|
| >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.025 Score=51.92 Aligned_cols=63 Identities=22% Similarity=0.387 Sum_probs=47.8
Q ss_pred eEEEEcccHHHHH-HHHHHHhCCCCCCCcEEEEeCCCHH-HHHHHHHcCceecc-CchhhccCCCEEEEee
Q 024016 12 ILGFIGAGKMAES-IAKGVAKSGVLPPDRICTAVHSNLK-RRDAFESIGVKVLS-DNNAVVEYSDVVVFSV 79 (274)
Q Consensus 12 ~IgiIG~G~mG~~-~a~~L~~~g~~~~~~v~v~~~r~~~-~~~~l~~~g~~~~~-~~~~~~~~aDiIil~v 79 (274)
+|-|||.|..|.+ +|+.|.+.|+ +|+++ |++.. ..+.|.+.|+.+.. ...+.++++|+||.+-
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~----~v~~~-D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~sp 66 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGY----QVSGS-DIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSA 66 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCC----eEEEE-CCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECC
Confidence 4789999999998 9999999999 99999 86543 34456667876642 2234466799998863
|
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081. |
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.022 Score=53.39 Aligned_cols=42 Identities=19% Similarity=0.307 Sum_probs=35.1
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~ 55 (274)
+.++|.|.|+ |.+|..+++.|++.|+ +|+++ .|+.++.+.+.
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~----~Vval-~Rn~ekl~~l~ 121 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGF----RVRAG-VRSAQRAESLV 121 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHH
Confidence 3456778875 9999999999999999 99999 99988876553
|
|
| >TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.055 Score=47.36 Aligned_cols=93 Identities=11% Similarity=0.043 Sum_probs=54.4
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHHcC-----------------------ceec--cCc
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIG-----------------------VKVL--SDN 65 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-~~~~~l~~~g-----------------------~~~~--~~~ 65 (274)
||||+|.|++|..+.+.|.+.+.-+..+|...++... +....+.+++ +.+. .++
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~p 80 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPTP 80 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCCh
Confidence 6999999999999999988754000116666634332 3333443311 1111 123
Q ss_pred hhh-c--cCCCEEEEeeCcccHHHHHHHhccccCCCCEEEEecCC
Q 024016 66 NAV-V--EYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 66 ~~~-~--~~aDiIil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g 107 (274)
.+. . .++|+||.|++.....+..... +..|..+|.++++
T Consensus 81 ~~~~w~~~gvDiVie~tG~~~s~e~a~~~---l~aGa~~V~~SaP 122 (325)
T TIGR01532 81 EALPWRALGVDLVLDCTGVYGNREQGERH---IRAGAKRVLFSHP 122 (325)
T ss_pred hhccccccCCCEEEEccchhccHHHHHHH---HHcCCeEEEecCC
Confidence 222 1 4789999999877666555433 3456666666554
|
Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species. |
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.035 Score=50.01 Aligned_cols=79 Identities=14% Similarity=0.133 Sum_probs=51.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------------------HHHHH----HHH--cCcee--c
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRDA----FES--IGVKV--L 62 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-------------------~~~~~----l~~--~g~~~--~ 62 (274)
..||.|||+|.+|+.++.+|...|. .+++++ |.+. .|++. +.+ ..+++ .
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~Gv---g~i~lv-D~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 117 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAGV---GTLGIV-EFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLH 117 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCC---CeEEEE-CCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEE
Confidence 4689999999999999999999997 256666 4322 12222 222 22322 1
Q ss_pred ------cCchhhccCCCEEEEeeCcccHHHHHHHhc
Q 024016 63 ------SDNNAVVEYSDVVVFSVKPQVVKDVAMQIR 92 (274)
Q Consensus 63 ------~~~~~~~~~aDiIil~v~~~~~~~v~~~i~ 92 (274)
.+..+.++++|+||.|+.....+..+.++.
T Consensus 118 ~~~i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~ 153 (392)
T PRK07878 118 EFRLDPSNAVELFSQYDLILDGTDNFATRYLVNDAA 153 (392)
T ss_pred eccCChhHHHHHHhcCCEEEECCCCHHHHHHHHHHH
Confidence 112356788999999987666666665544
|
|
| >TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.032 Score=52.73 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=26.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEE
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTA 43 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~ 43 (274)
..||.|||+|.+|+..++.|...|. .+++++
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~GV---g~ItlV 368 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGWGV---RHITFV 368 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCC---CeEEEE
Confidence 4699999999999999999999997 245554
|
This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. |
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.012 Score=51.50 Aligned_cols=62 Identities=15% Similarity=0.274 Sum_probs=42.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH-HHHcCceec-c---CchhhccCCCEEE
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA-FESIGVKVL-S---DNNAVVEYSDVVV 76 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~-l~~~g~~~~-~---~~~~~~~~aDiIi 76 (274)
+++|||||.|-.|..|+..-.+-|+ ++++. +.+++.... ....-+... + ...++++.||+|=
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~----~v~vL-dp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT 67 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGI----KVIVL-DPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVIT 67 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCC----EEEEe-cCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEE
Confidence 3689999999999999999999999 99999 877654322 222112111 2 2345677788774
|
|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.038 Score=47.04 Aligned_cols=73 Identities=15% Similarity=0.317 Sum_probs=55.0
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccH
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~ 84 (274)
+...+++.|||- ..+|.+++.-|.+.|. .|+++ ++.. .+..+.+++||+||.++. |..+
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~A----tVt~c-hs~T--------------~~l~~~~~~ADIvIsAvGkp~~i 215 (278)
T PRK14172 155 DIEGKEVVVIGRSNIVGKPVAQLLLNENA----TVTIC-HSKT--------------KNLKEVCKKADILVVAIGRPKFI 215 (278)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEcCCCcCcc
Confidence 345679999987 5689999999998887 89998 6421 245677889999999995 5543
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
.. ..+++|.+||++
T Consensus 216 ~~------~~ik~gavVIDv 229 (278)
T PRK14172 216 DE------EYVKEGAIVIDV 229 (278)
T ss_pred CH------HHcCCCcEEEEe
Confidence 21 236799999986
|
|
| >cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.042 Score=49.93 Aligned_cols=69 Identities=19% Similarity=0.358 Sum_probs=48.4
Q ss_pred CeEEEEcccHHHH-HHHHHHHhC-CCCCCCcEEEEeCCC-HHHHHHHHH--------cC----ceeccCchhhccCCCEE
Q 024016 11 FILGFIGAGKMAE-SIAKGVAKS-GVLPPDRICTAVHSN-LKRRDAFES--------IG----VKVLSDNNAVVEYSDVV 75 (274)
Q Consensus 11 ~~IgiIG~G~mG~-~~a~~L~~~-g~~~~~~v~v~~~r~-~~~~~~l~~--------~g----~~~~~~~~~~~~~aDiI 75 (274)
|||.|||.|..-+ .+...|.+. --++..+|.++ |.+ +++.+...+ .| +..+++..+++++||+|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~-Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~gadfV 79 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLV-DIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEGADFV 79 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEe-cCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEE
Confidence 6999999998643 355566553 21344689999 999 787643221 23 34567889999999999
Q ss_pred EEeeC
Q 024016 76 VFSVK 80 (274)
Q Consensus 76 il~v~ 80 (274)
|.+..
T Consensus 80 i~~~~ 84 (419)
T cd05296 80 FTQIR 84 (419)
T ss_pred EEEEe
Confidence 99973
|
Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein |
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.068 Score=49.32 Aligned_cols=102 Identities=10% Similarity=0.116 Sum_probs=69.1
Q ss_pred CCCCeEEEEcc----------cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc--------------------
Q 024016 8 AESFILGFIGA----------GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-------------------- 57 (274)
Q Consensus 8 ~~~~~IgiIG~----------G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~-------------------- 57 (274)
.+.+||+|+|+ ..-...++..|.+.|. +|.+| |.--...+.-...
T Consensus 322 ~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~----~V~~~-DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (473)
T PLN02353 322 VSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKA----KLSIY-DPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTA 396 (473)
T ss_pred cCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCC----EEEEE-CCCCChHHHHHHhhccccccccccccccccccc
Confidence 35679999998 5578889999999998 99999 8753221110001
Q ss_pred --CceeccCchhhccCCCEEEEeeCcccHHHH-HHHhccccCCCCEEEEecCCCCHHHHH
Q 024016 58 --GVKVLSDNNAVVEYSDVVVFSVKPQVVKDV-AMQIRPLLSRKKLLVSVAAGVKLKDLQ 114 (274)
Q Consensus 58 --g~~~~~~~~~~~~~aDiIil~v~~~~~~~v-~~~i~~~l~~~~~vis~~~g~~~~~l~ 114 (274)
+++...+..++++++|+|+++++-+.++.+ ++.+.+.+.+.++|++.-+-+..+.+.
T Consensus 397 ~~~~~~~~~~~~a~~~aD~vvi~t~~~ef~~l~~~~~~~~m~~~~~viD~rn~l~~~~~~ 456 (473)
T PLN02353 397 VKQVSVVWDAYEATKGAHGICILTEWDEFKTLDYQKIYDNMQKPAFVFDGRNVLDHEKLR 456 (473)
T ss_pred ccceeeeCCHHHHhcCCCEEEECCCChHhcccCHHHHHHhccCCCEEEECCCCCCHHHHH
Confidence 234555667889999999999987766543 334444444445788876666655554
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.029 Score=45.07 Aligned_cols=86 Identities=21% Similarity=0.230 Sum_probs=57.4
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc-C--ceec--cC----chhhccCCCEEE
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-G--VKVL--SD----NNAVVEYSDVVV 76 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~-g--~~~~--~~----~~~~~~~aDiIi 76 (274)
..+.++|.|||- ..+|.+++.-|.+.|. .|+++ +.+.-.. +... . -.-. .+ ..+.+++|||||
T Consensus 59 ~l~GK~vvVIGrS~iVGkPla~lL~~~~A----tVti~-~~~~~~~--~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVI 131 (197)
T cd01079 59 RLYGKTITIINRSEVVGRPLAALLANDGA----RVYSV-DINGIQV--FTRGESIRHEKHHVTDEEAMTLDCLSQSDVVI 131 (197)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCC----EEEEE-ecCcccc--cccccccccccccccchhhHHHHHhhhCCEEE
Confidence 566789999987 4679999999999887 89988 7543211 1110 0 0000 12 457789999999
Q ss_pred EeeC-ccc-HHHHHHHhccccCCCCEEEEec
Q 024016 77 FSVK-PQV-VKDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 77 l~v~-~~~-~~~v~~~i~~~l~~~~~vis~~ 105 (274)
.+++ +.. +.. ..+++|.+||++.
T Consensus 132 sAvG~~~~~i~~------d~ik~GavVIDVG 156 (197)
T cd01079 132 TGVPSPNYKVPT------ELLKDGAICINFA 156 (197)
T ss_pred EccCCCCCccCH------HHcCCCcEEEEcC
Confidence 9996 443 221 2357999999863
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.042 Score=47.29 Aligned_cols=73 Identities=15% Similarity=0.251 Sum_probs=54.7
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccH
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~ 84 (274)
+...++|.|||- ..+|.+++.-|.+.|. .|+++ +... .+..+.+++||+||.++. +..+
T Consensus 164 ~l~Gk~vvVIGRS~iVGkPla~lL~~~~A----TVtvc-hs~T--------------~nl~~~~~~ADIvv~AvGk~~~i 224 (299)
T PLN02516 164 PIKGKKAVVVGRSNIVGLPVSLLLLKADA----TVTVV-HSRT--------------PDPESIVREADIVIAAAGQAMMI 224 (299)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEcCCCcCcc
Confidence 445689999987 4679999999998887 89998 5431 245677899999999994 4322
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
. ..++++|.+||++
T Consensus 225 ~------~~~vk~gavVIDv 238 (299)
T PLN02516 225 K------GDWIKPGAAVIDV 238 (299)
T ss_pred C------HHHcCCCCEEEEe
Confidence 2 1246899999986
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.076 Score=45.04 Aligned_cols=43 Identities=16% Similarity=0.273 Sum_probs=36.3
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~ 56 (274)
+.++|.|.|+ |.+|.++++.|.+.|+ +|++. +|++++.+.+..
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~----~V~~~-~r~~~~l~~~~~ 45 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGY----TVYGA-ARRVDKMEDLAS 45 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHh
Confidence 4568888885 9999999999999999 99999 999887765543
|
|
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.035 Score=54.83 Aligned_cols=65 Identities=23% Similarity=0.344 Sum_probs=49.8
Q ss_pred CCCeEEEEcccHHHHHH-HHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHHcCceecc-CchhhccCCCEEEEe
Q 024016 9 ESFILGFIGAGKMAESI-AKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIGVKVLS-DNNAVVEYSDVVVFS 78 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~-a~~L~~~g~~~~~~v~v~~~r~~-~~~~~l~~~g~~~~~-~~~~~~~~aDiIil~ 78 (274)
.+++|.|||+|..|.+. |+.|.+.|+ +|+++ |.++ ...+.|.+.|+.+.. ...+.+.++|+|+..
T Consensus 3 ~~~~i~viG~G~sG~salA~~L~~~G~----~V~~s-D~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~S 70 (809)
T PRK14573 3 KSLFYHFIGIGGIGMSALAHILLDRGY----SVSGS-DLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYS 70 (809)
T ss_pred CcceEEEEEecHHhHHHHHHHHHHCCC----eEEEE-CCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEEC
Confidence 45679999999999997 999999999 99999 8654 344567667876532 233556789999876
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.058 Score=44.60 Aligned_cols=84 Identities=18% Similarity=0.202 Sum_probs=53.1
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~ 84 (274)
+.++|.|.|. |.+|..+++.|.+.|+ +|++. +|++++.+.+... +. + ..+++.++.. .++.+
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g~----~v~~~-~r~~~~~~~~~~~-~~------~--~~~~~~~~~~D~~~~~~~ 69 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADGA----KVVIY-DSNEEAAEALAAE-LR------A--AGGEARVLVFDVSDEAAV 69 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-eCChhHHHHHHHH-HH------h--cCCceEEEEccCCCHHHH
Confidence 4468999975 9999999999999999 89999 9998766543321 00 0 1223333333 34456
Q ss_pred HHHHHHhccccCCCCEEEEecC
Q 024016 85 KDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~~ 106 (274)
.+++.++...+.+=..+|+..+
T Consensus 70 ~~~~~~~~~~~~~id~vi~~ag 91 (246)
T PRK05653 70 RALIEAAVEAFGALDILVNNAG 91 (246)
T ss_pred HHHHHHHHHHhCCCCEEEECCC
Confidence 6666665543333346776653
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.034 Score=52.66 Aligned_cols=68 Identities=16% Similarity=0.147 Sum_probs=48.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH---------------------HHHHHHHHcCceeccC--
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL---------------------KRRDAFESIGVKVLSD-- 64 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~---------------------~~~~~l~~~g~~~~~~-- 64 (274)
...++|.|||+|..|...+..|.+.|+ +|+++ ++.+ .+.+.+.+.|+.+..+
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~----~V~v~-e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~ 209 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGH----AVTIF-EAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVR 209 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC----eEEEE-ecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCE
Confidence 345799999999999999999999999 89999 8532 2344555677653221
Q ss_pred ------chhhccCCCEEEEeeC
Q 024016 65 ------NNAVVEYSDVVVFSVK 80 (274)
Q Consensus 65 ------~~~~~~~aDiIil~v~ 80 (274)
..+.-...|.||+++-
T Consensus 210 ~~~~~~~~~~~~~~D~Vi~AtG 231 (564)
T PRK12771 210 VGEDITLEQLEGEFDAVFVAIG 231 (564)
T ss_pred ECCcCCHHHHHhhCCEEEEeeC
Confidence 1122335899999994
|
|
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.04 Score=47.17 Aligned_cols=73 Identities=22% Similarity=0.341 Sum_probs=54.7
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccH
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~ 84 (274)
+...+++.|||- ..+|.+++.-|.+.+. .|+++ .+.. .+..+.+++||+||.++. |..+
T Consensus 152 ~l~Gk~vvViGrS~iVGkPla~lL~~~~a----TVtic-hs~T--------------~~l~~~~~~ADIvIsAvGkp~~i 212 (287)
T PRK14173 152 PLAGKEVVVVGRSNIVGKPLAALLLREDA----TVTLA-HSKT--------------QDLPAVTRRADVLVVAVGRPHLI 212 (287)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEecCCcCcc
Confidence 345689999987 6789999999998887 89988 5331 245667889999999994 5533
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
. ..++++|.+||++
T Consensus 213 ~------~~~vk~GavVIDV 226 (287)
T PRK14173 213 T------PEMVRPGAVVVDV 226 (287)
T ss_pred C------HHHcCCCCEEEEc
Confidence 2 1236799999986
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.048 Score=46.56 Aligned_cols=73 Identities=16% Similarity=0.252 Sum_probs=54.8
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccH
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~ 84 (274)
+...+++.|||- ..+|.+++.-|.+.|. .|+++ +... .+..+.+++||+||.++. +..+
T Consensus 156 ~l~Gk~vvViGrS~iVGkPla~lL~~~~a----tVt~c-hs~T--------------~~l~~~~~~ADIvIsAvGk~~~i 216 (284)
T PRK14177 156 DVTGKNAVVVGRSPILGKPMAMLLTEMNA----TVTLC-HSKT--------------QNLPSIVRQADIIVGAVGKPEFI 216 (284)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEeCCCcCcc
Confidence 345679999987 6789999999998887 89988 5331 245567889999999994 5543
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
. ...+++|.+||++
T Consensus 217 ~------~~~ik~gavVIDv 230 (284)
T PRK14177 217 K------ADWISEGAVLLDA 230 (284)
T ss_pred C------HHHcCCCCEEEEe
Confidence 2 1236799999986
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.071 Score=45.87 Aligned_cols=93 Identities=16% Similarity=0.146 Sum_probs=59.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----cC----ceec-cCchhh---ccCCCEE
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IG----VKVL-SDNNAV---VEYSDVV 75 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-----~g----~~~~-~~~~~~---~~~aDiI 75 (274)
...+|.+||+|..|..-.--+ + ++.+...++.+ |++++..+...+ .| ++.. .|..+. ..+.|+|
T Consensus 123 ~p~~VldIGcGpgpltaiila-a-~~~p~~~~~gi-D~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlV 199 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLA-K-HHLPTTSFHNF-DIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVV 199 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHH-H-hcCCCCEEEEE-eCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEE
Confidence 456899999998866333222 1 12233378899 999987654443 22 2221 222222 3579999
Q ss_pred EEee----CcccHHHHHHHhccccCCCCEEEEe
Q 024016 76 VFSV----KPQVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 76 il~v----~~~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
|+.+ ....-.++++.+...++||.+++--
T Consensus 200 F~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 200 FLAALVGMDKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred EEecccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence 9986 2356678889999999999887743
|
|
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.053 Score=48.93 Aligned_cols=111 Identities=18% Similarity=0.228 Sum_probs=63.7
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEE-EEeCCC----------HHHHHHHHH-c-------CceeccCchh
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHSN----------LKRRDAFES-I-------GVKVLSDNNA 67 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~-v~~~r~----------~~~~~~l~~-~-------g~~~~~~~~~ 67 (274)
..+.+||+|.|.|++|+..++.|.+.|. .|+ +. |.+ .+.+.+.++ . +.+.. ++.+
T Consensus 203 ~l~g~~VaIqGfGnVG~~~A~~L~e~Ga----kVVaVs-D~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i-~~~e 276 (410)
T PLN02477 203 SIAGQTFVIQGFGNVGSWAAQLIHEKGG----KIVAVS-DITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPI-DPDD 276 (410)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHcCC----EEEEEE-CCCCeEECCCCCCHHHHHHHHHhcCchhccccceEe-cCcc
Confidence 3456899999999999999999999998 776 55 765 544433322 1 22222 2233
Q ss_pred h-ccCCCEEEEeeCcccH-HHHHHHhccccCCCCEEEEecCCCCHHHHHHhhCCCceEEEcCCc
Q 024016 68 V-VEYSDVVVFSVKPQVV-KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNT 129 (274)
Q Consensus 68 ~-~~~aDiIil~v~~~~~-~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~~~~~~~~~p~~ 129 (274)
+ ..+|||++-|--...+ .+....+ .-++|+--.++-....-.+.+.. +-+-+.|..
T Consensus 277 ~l~~~~DvliP~Al~~~I~~~na~~i-----~ak~I~egAN~p~t~ea~~~L~~-rGI~~~PD~ 334 (410)
T PLN02477 277 ILVEPCDVLIPAALGGVINKENAADV-----KAKFIVEAANHPTDPEADEILRK-KGVVVLPDI 334 (410)
T ss_pred ceeccccEEeeccccccCCHhHHHHc-----CCcEEEeCCCCCCCHHHHHHHHH-CCcEEEChH
Confidence 3 3489999988543332 3333333 22566655554333333344432 334455643
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.1 Score=44.54 Aligned_cols=86 Identities=20% Similarity=0.186 Sum_probs=56.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCc-EEEEeCCCHHHHHHHHHcCceeccCch---hh----c--cCCCEEEEee
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDR-ICTAVHSNLKRRDAFESIGVKVLSDNN---AV----V--EYSDVVVFSV 79 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~-v~v~~~r~~~~~~~l~~~g~~~~~~~~---~~----~--~~aDiIil~v 79 (274)
..+|.|+|+|.+|...++.+...|. + |++. ++++++.+.+.+.|+...-+.. +. . ...|++|-|+
T Consensus 121 g~~VlV~G~G~vG~~~~~~ak~~G~----~~Vi~~-~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~ 195 (280)
T TIGR03366 121 GRRVLVVGAGMLGLTAAAAAAAAGA----ARVVAA-DPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFS 195 (280)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC----CEEEEE-CCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECC
Confidence 4589999999999999888888887 5 8888 9999988877777764321111 11 1 2468888777
Q ss_pred C-cccHHHHHHHhccccCCCCEEEEe
Q 024016 80 K-PQVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 80 ~-~~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
. +..+...++- ++++..++..
T Consensus 196 G~~~~~~~~~~~----l~~~G~iv~~ 217 (280)
T TIGR03366 196 GATAAVRACLES----LDVGGTAVLA 217 (280)
T ss_pred CChHHHHHHHHH----hcCCCEEEEe
Confidence 4 3334444433 3344455543
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.053 Score=45.34 Aligned_cols=42 Identities=24% Similarity=0.229 Sum_probs=35.8
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024016 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (274)
Q Consensus 9 ~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~ 55 (274)
..++|-|.| .|.+|..+++.|++.|+ +|.+. +|++++.+.+.
T Consensus 3 ~~~~vlItG~sg~iG~~la~~l~~~g~----~v~~~-~r~~~~~~~~~ 45 (258)
T PRK12429 3 KGKVALVTGAASGIGLEIALALAKEGA----KVVIA-DLNDEAAAAAA 45 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHH
Confidence 456898997 59999999999999999 99999 99988766554
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.087 Score=46.45 Aligned_cols=88 Identities=14% Similarity=0.095 Sum_probs=53.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHh-CCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhcc--CCCEEEEeeCcccHHH
Q 024016 10 SFILGFIGAGKMAESIAKGVAK-SGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE--YSDVVVFSVKPQVVKD 86 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~-~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~aDiIil~v~~~~~~~ 86 (274)
..+|.|+|+|.+|...+..+.+ .|. .+|++. ++++++.+.+.+.+..... .+..+ ..|+||=|+.......
T Consensus 164 g~~VlV~G~G~vGl~~~~~a~~~~g~---~~vi~~-~~~~~k~~~a~~~~~~~~~--~~~~~~~g~d~viD~~G~~~~~~ 237 (341)
T cd08237 164 RNVIGVWGDGNLGYITALLLKQIYPE---SKLVVF-GKHQEKLDLFSFADETYLI--DDIPEDLAVDHAFECVGGRGSQS 237 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCC---CcEEEE-eCcHhHHHHHhhcCceeeh--hhhhhccCCcEEEECCCCCccHH
Confidence 4589999999999987776654 332 178889 9999888777654543211 11112 4788888885322222
Q ss_pred HHHHhccccCCCCEEEE
Q 024016 87 VAMQIRPLLSRKKLLVS 103 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis 103 (274)
.+......++++..++.
T Consensus 238 ~~~~~~~~l~~~G~iv~ 254 (341)
T cd08237 238 AINQIIDYIRPQGTIGL 254 (341)
T ss_pred HHHHHHHhCcCCcEEEE
Confidence 33333334455555553
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.048 Score=46.94 Aligned_cols=73 Identities=15% Similarity=0.221 Sum_probs=54.4
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccH
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~ 84 (274)
+...++|.|||- ..+|.+++.-|.+.|. .|+++ .... .+..+.+++||+||.|+. |..+
T Consensus 155 ~l~Gk~vvVIGrS~iVGkPla~lL~~~~a----tVtv~-hs~T--------------~~l~~~~~~ADIvIsAvGkp~~i 215 (297)
T PRK14186 155 DIAGKKAVVVGRSILVGKPLALMLLAANA----TVTIA-HSRT--------------QDLASITREADILVAAAGRPNLI 215 (297)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEccCCcCcc
Confidence 345679999987 5679999999998887 89888 5331 245667889999999995 5533
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
.. .++++|.+||++
T Consensus 216 ~~------~~ik~gavVIDv 229 (297)
T PRK14186 216 GA------EMVKPGAVVVDV 229 (297)
T ss_pred CH------HHcCCCCEEEEe
Confidence 21 246799999986
|
|
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.045 Score=46.78 Aligned_cols=73 Identities=14% Similarity=0.195 Sum_probs=54.0
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHh--CCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cc
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAK--SGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQ 82 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~--~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~ 82 (274)
+...+++.|||- ..+|.+++.-|.+ .+. .|+++ ++. +.+..+.+++||+||.++. |.
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~~~a----tVtvc-hs~--------------T~~l~~~~k~ADIvV~AvGkp~ 215 (284)
T PRK14193 155 ELAGAHVVVIGRGVTVGRPIGLLLTRRSENA----TVTLC-HTG--------------TRDLAAHTRRADIIVAAAGVAH 215 (284)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHhhccCCC----EEEEe-CCC--------------CCCHHHHHHhCCEEEEecCCcC
Confidence 345679999987 6789999999987 565 88888 543 1356677899999999994 55
Q ss_pred cHHHHHHHhccccCCCCEEEEe
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~ 104 (274)
.+.. .++++|.+||++
T Consensus 216 ~i~~------~~ik~GavVIDv 231 (284)
T PRK14193 216 LVTA------DMVKPGAAVLDV 231 (284)
T ss_pred ccCH------HHcCCCCEEEEc
Confidence 3321 246899999986
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.047 Score=46.60 Aligned_cols=73 Identities=15% Similarity=0.257 Sum_probs=54.6
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccH
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~ 84 (274)
+...+++.|||- ..+|.+++.-|.+.+. .|+++ ++.. .+..+.+++||+||.++. |..+
T Consensus 154 ~l~Gk~vvVvGrS~iVGkPla~lL~~~~a----tVt~c-hs~T--------------~nl~~~~~~ADIvIsAvGkp~~i 214 (282)
T PRK14166 154 DLEGKDAVIIGASNIVGRPMATMLLNAGA----TVSVC-HIKT--------------KDLSLYTRQADLIIVAAGCVNLL 214 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEcCCCcCcc
Confidence 345679999987 5679999999988887 89988 5432 245667889999999994 5543
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
.. ..+++|.+||++
T Consensus 215 ~~------~~vk~GavVIDv 228 (282)
T PRK14166 215 RS------DMVKEGVIVVDV 228 (282)
T ss_pred CH------HHcCCCCEEEEe
Confidence 22 236799999986
|
|
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.024 Score=51.60 Aligned_cols=64 Identities=19% Similarity=0.168 Sum_probs=47.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH----HHHHHHcCceecc--CchhhccCCCEEEEe
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR----RDAFESIGVKVLS--DNNAVVEYSDVVVFS 78 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~----~~~l~~~g~~~~~--~~~~~~~~aDiIil~ 78 (274)
.+||.|+|+|.=|.+.++.|.+.|+ +|+++ |.++.. ...+...++.+.. .+.+....+|+|+..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~----~v~v~-D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~S 76 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGA----EVTVS-DDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKS 76 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCC----eEEEE-cCCCCccchhhhhhhccCceeecCccchhccccCCEEEEC
Confidence 6899999999999999999999998 99999 866544 1222234554322 122456789999986
|
|
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.07 Score=44.48 Aligned_cols=86 Identities=16% Similarity=0.245 Sum_probs=52.9
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------------------HHHHH----HHH--cCcee--c-c
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRDA----FES--IGVKV--L-S 63 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-------------------~~~~~----l~~--~g~~~--~-~ 63 (274)
||.+||+|.+|+.++++|...|+ .+++++ |.+. .|++. +.+ ..+.+ . .
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gv---g~i~iv-D~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~ 76 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGF---GQIHVI-DMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQN 76 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC---CeEEEE-eCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEec
Confidence 68999999999999999999997 356666 4422 12222 222 12221 1 1
Q ss_pred C-------chhhccCCCEEEEeeCcccHHHHHHHhccccCCCCEEEE
Q 024016 64 D-------NNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVS 103 (274)
Q Consensus 64 ~-------~~~~~~~aDiIil~v~~~~~~~v~~~i~~~l~~~~~vis 103 (274)
. ..+..++.|+||.|+..-..+..+.+..-.. +..+|+
T Consensus 77 ~i~~~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~--~iplI~ 121 (234)
T cd01484 77 KVGPEQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFL--IVPLIE 121 (234)
T ss_pred cCChhhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHc--CCCEEE
Confidence 1 1345678999999987666666666544222 344554
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.12 Score=44.49 Aligned_cols=53 Identities=17% Similarity=0.293 Sum_probs=45.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCch
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNN 66 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~ 66 (274)
..+++|.|+|.+|.+.+.+-...|. ++|+.. |.|+++.+..++.|++-+-++.
T Consensus 193 GstvAVfGLG~VGLav~~Gaka~GA---srIIgv-DiN~~Kf~~ak~fGaTe~iNp~ 245 (375)
T KOG0022|consen 193 GSTVAVFGLGGVGLAVAMGAKAAGA---SRIIGV-DINPDKFEKAKEFGATEFINPK 245 (375)
T ss_pred CCEEEEEecchHHHHHHHhHHhcCc---ccEEEE-ecCHHHHHHHHhcCcceecChh
Confidence 3689999999999999999999986 489999 9999999999999986444443
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.014 Score=50.76 Aligned_cols=64 Identities=13% Similarity=0.188 Sum_probs=46.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec----c---CchhhccCCCEEEEee
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL----S---DNNAVVEYSDVVVFSV 79 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~----~---~~~~~~~~aDiIil~v 79 (274)
|||.|.|. |.+|+.++..|++.|+ +|++. +|++++...+...++... . +..++++++|+||-+.
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a 72 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGE----EVRVL-VRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVA 72 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCC----EEEEE-EecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEec
Confidence 47999975 9999999999999999 99999 888766544433343321 1 2234566889988775
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.068 Score=45.53 Aligned_cols=89 Identities=13% Similarity=0.148 Sum_probs=47.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH---H--c----Ccee-ccCch---hhccCCCEEEE
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE---S--I----GVKV-LSDNN---AVVEYSDVVVF 77 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~---~--~----g~~~-~~~~~---~~~~~aDiIil 77 (274)
.||.|||.|.+-.....-....|. ...|..+ |++++..+... + . +.++ +.+.. .-+.++|+|++
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~--~~~v~~i-D~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGP--GARVHNI-DIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT----EEEEE-ESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCC--CCeEEEE-eCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEE
Confidence 499999999987765543323221 1257788 99997654332 2 1 2232 22222 22468899999
Q ss_pred eeCcc----cHHHHHHHhccccCCCCEEE
Q 024016 78 SVKPQ----VVKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 78 ~v~~~----~~~~v~~~i~~~l~~~~~vi 102 (274)
+--.. .-.+++..+..++++|..|+
T Consensus 199 AalVg~~~e~K~~Il~~l~~~m~~ga~l~ 227 (276)
T PF03059_consen 199 AALVGMDAEPKEEILEHLAKHMAPGARLV 227 (276)
T ss_dssp -TT-S----SHHHHHHHHHHHS-TTSEEE
T ss_pred hhhcccccchHHHHHHHHHhhCCCCcEEE
Confidence 96544 67889999999999998777
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.1 Score=43.60 Aligned_cols=85 Identities=9% Similarity=0.143 Sum_probs=53.6
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~ 84 (274)
+.++|-|.|. |.+|.++++.|.+.|+ +|.+. +|++++.+.+.+. + ........+.++.. .++++
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~----~v~~~-~r~~~~~~~~~~~-l------~~~~~~~~~~~~~~Dl~d~~~~ 70 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGG----IVIAA-DIDKEALNELLES-L------GKEFKSKKLSLVELDITDQESL 70 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC----EEEEE-ecChHHHHHHHHH-H------HhhcCCCceeEEEecCCCHHHH
Confidence 4567888875 8999999999999999 99999 9998877655431 0 00001112222222 35567
Q ss_pred HHHHHHhccccCCCCEEEEec
Q 024016 85 KDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~ 105 (274)
.+++.++...+.+=..+|++.
T Consensus 71 ~~~~~~~~~~~~~id~vi~~A 91 (256)
T PRK09186 71 EEFLSKSAEKYGKIDGAVNCA 91 (256)
T ss_pred HHHHHHHHHHcCCccEEEECC
Confidence 777776655443334677654
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.1 Score=43.60 Aligned_cols=78 Identities=13% Similarity=0.238 Sum_probs=50.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccHHH
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVKD 86 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~~~ 86 (274)
|+|-|+|. |.+|.++++.|.+.|+ +|++. +|++++.+.+... . ..++.++.. .++.+.+
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~~~-~-----------~~~~~~~~~Dl~~~~~i~~ 63 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGH----KVIAT-GRRQERLQELKDE-L-----------GDNLYIAQLDVRNRAAIEE 63 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-h-----------ccceEEEEecCCCHHHHHH
Confidence 57888975 9999999999999999 99999 9998877665431 0 012222222 2445666
Q ss_pred HHHHhccccCCCCEEEEec
Q 024016 87 VAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~ 105 (274)
+++++...+.+=..+|+..
T Consensus 64 ~~~~~~~~~~~id~vi~~a 82 (248)
T PRK10538 64 MLASLPAEWRNIDVLVNNA 82 (248)
T ss_pred HHHHHHHHcCCCCEEEECC
Confidence 6666554443334566553
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.026 Score=49.81 Aligned_cols=63 Identities=13% Similarity=0.161 Sum_probs=44.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHH-cCceec-cCc-------hhhccCCCEEEEe
Q 024016 11 FILGFIGA-GKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFES-IGVKVL-SDN-------NAVVEYSDVVVFS 78 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~-g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~-~~~-------~~~~~~aDiIil~ 78 (274)
|||.|.|+ |.+|+.+++.|++. |+ +|++. +|+.++...+.. .++... .|. .++++++|+||=+
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~----~V~~~-~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~ 75 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDW----EVYGM-DMQTDRLGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILPL 75 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCC----eEEEE-eCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEEC
Confidence 68999996 99999999999986 68 99999 887765544433 233321 121 2345689999943
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.12 Score=44.40 Aligned_cols=79 Identities=16% Similarity=0.133 Sum_probs=50.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------------------HHH----HHHHHc--Cce--e
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRR----DAFESI--GVK--V 61 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-------------------~~~----~~l~~~--g~~--~ 61 (274)
+..+|.|+|+|.+|..++++|..+|. .+|+++ |.+. .|+ +.+++. .+. +
T Consensus 18 ~~s~VLIvG~gGLG~EiaKnLalaGV---g~itI~-D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~ 93 (286)
T cd01491 18 QKSNVLISGLGGLGVEIAKNLILAGV---KSVTLH-DTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTV 93 (286)
T ss_pred hcCcEEEEcCCHHHHHHHHHHHHcCC---CeEEEE-cCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEE
Confidence 34689999999999999999999997 367777 5432 111 223332 222 2
Q ss_pred ccC--chhhccCCCEEEEeeCcccHHHHHHHh
Q 024016 62 LSD--NNAVVEYSDVVVFSVKPQVVKDVAMQI 91 (274)
Q Consensus 62 ~~~--~~~~~~~aDiIil~v~~~~~~~v~~~i 91 (274)
.+. ..+.+.+.|+|+.|..+...+..+.++
T Consensus 94 ~~~~~~~~~l~~fdvVV~~~~~~~~~~~in~~ 125 (286)
T cd01491 94 STGPLTTDELLKFQVVVLTDASLEDQLKINEF 125 (286)
T ss_pred EeccCCHHHHhcCCEEEEecCCHHHHHHHHHH
Confidence 221 245678899999887544333334433
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.038 Score=50.69 Aligned_cols=65 Identities=15% Similarity=0.193 Sum_probs=48.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH--HHHHHHH--cCceecc--CchhhccCCCEEEEee
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK--RRDAFES--IGVKVLS--DNNAVVEYSDVVVFSV 79 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~--~~~~l~~--~g~~~~~--~~~~~~~~aDiIil~v 79 (274)
.-.|.|||.|..|.++|+.|.+.|+ +|+++ |+.+. ..++|.+ .|+.+.. ...+.+.++|+|+..-
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~----~v~~~-D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp 76 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGI----PFAVM-DSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISP 76 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCC----eEEEE-eCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECC
Confidence 3579999999999999999999999 99999 86543 2344655 3776532 2334567899888763
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.12 Score=43.97 Aligned_cols=43 Identities=16% Similarity=0.228 Sum_probs=36.0
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~ 56 (274)
.+++|.|.|+ |.+|.++++.|.+.|+ +|++. +|++++.+.+.+
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~----~V~~~-~r~~~~~~~l~~ 46 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGH----RVVGT-VRSEAARADFEA 46 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcC----EEEEE-eCCHHHHHHHHh
Confidence 3467888875 9999999999999999 99999 999887766554
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.1 Score=44.76 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=28.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
..||.|||+|.+|+.++.+|...|. .+++++ |.+
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGV---G~i~lv-D~D 60 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGI---GKFTIA-DFD 60 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCC---CeEEEE-eCC
Confidence 4689999999999999999999997 256666 543
|
|
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.053 Score=46.28 Aligned_cols=73 Identities=14% Similarity=0.250 Sum_probs=54.4
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccH
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~ 84 (274)
+...++|.|||- ..+|.+++.-|.+.|. .|+++ +... .+..+.+++||+||.++. |..+
T Consensus 153 ~l~Gk~vvViGrS~iVGkPla~lL~~~~a----tVtic-hs~T--------------~~l~~~~~~ADIvI~AvG~p~~i 213 (282)
T PRK14169 153 DVAGKRVVIVGRSNIVGRPLAGLMVNHDA----TVTIA-HSKT--------------RNLKQLTKEADILVVAVGVPHFI 213 (282)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCC----EEEEE-CCCC--------------CCHHHHHhhCCEEEEccCCcCcc
Confidence 345679999987 5679999999998887 89888 5331 245667889999999995 5543
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
.. .++++|.+||++
T Consensus 214 ~~------~~vk~GavVIDv 227 (282)
T PRK14169 214 GA------DAVKPGAVVIDV 227 (282)
T ss_pred CH------HHcCCCcEEEEe
Confidence 21 236799999986
|
|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.057 Score=46.36 Aligned_cols=73 Identities=19% Similarity=0.228 Sum_probs=54.3
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccH
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~ 84 (274)
+...++|.|||- ..+|.+++.-|.+.+. .|+++ +... .+..+.+++||+||.++. |..+
T Consensus 157 ~l~Gk~vvViGrS~iVGkPla~lL~~~~a----TVt~c-hs~T--------------~~l~~~~~~ADIvVsAvGkp~~i 217 (294)
T PRK14187 157 NLSGSDAVVIGRSNIVGKPMACLLLGENC----TVTTV-HSAT--------------RDLADYCSKADILVAAVGIPNFV 217 (294)
T ss_pred CCCCCEEEEECCCccchHHHHHHHhhCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEccCCcCcc
Confidence 345679999987 5679999999988887 89988 5421 245677899999999994 5543
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
.. .++++|.+||++
T Consensus 218 ~~------~~ik~gaiVIDV 231 (294)
T PRK14187 218 KY------SWIKKGAIVIDV 231 (294)
T ss_pred CH------HHcCCCCEEEEe
Confidence 21 236789999986
|
|
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.058 Score=46.17 Aligned_cols=72 Identities=14% Similarity=0.266 Sum_probs=53.8
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccHH
Q 024016 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVK 85 (274)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~ 85 (274)
...+++.|||- ..+|.+++.-|.+.+. .|+++ +... .+..+.+++|||||.++. |..+.
T Consensus 157 l~GK~vvViGrS~iVGkPla~lL~~~~A----TVtic-hs~T--------------~~L~~~~~~ADIvV~AvGkp~~i~ 217 (288)
T PRK14171 157 LTGKNVVIIGRSNIVGKPLSALLLKENC----SVTIC-HSKT--------------HNLSSITSKADIVVAAIGSPLKLT 217 (288)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEccCCCCccC
Confidence 45678999987 5679999999988887 89988 5321 245677889999999994 55332
Q ss_pred HHHHHhccccCCCCEEEEe
Q 024016 86 DVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~ 104 (274)
. ..+++|.+||++
T Consensus 218 ~------~~vk~GavVIDv 230 (288)
T PRK14171 218 A------EYFNPESIVIDV 230 (288)
T ss_pred H------HHcCCCCEEEEe
Confidence 1 236799999986
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.14 Score=43.49 Aligned_cols=87 Identities=14% Similarity=0.103 Sum_probs=53.6
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---Cccc
Q 024016 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQV 83 (274)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~ 83 (274)
|+.++|-|.|+ |.+|..+++.|.+.|+ +|++. +|++++.+.+.+. +. +.....++.++.. .++.
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~~~-l~------~~~~~~~~~~~~~Dl~~~~~ 72 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGA----AVMIV-GRNPDKLAAAAEE-IE------ALKGAGAVRYEPADVTDEDQ 72 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHH-HH------hccCCCceEEEEcCCCCHHH
Confidence 45678999986 8999999999999999 99999 8988766554331 00 0000123333333 2345
Q ss_pred HHHHHHHhccccCCCCEEEEecC
Q 024016 84 VKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
+..+++++...+.+=..+|+..+
T Consensus 73 ~~~~~~~~~~~~~~~d~li~~ag 95 (276)
T PRK05875 73 VARAVDAATAWHGRLHGVVHCAG 95 (276)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 56666655443333345666543
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.075 Score=45.84 Aligned_cols=83 Identities=14% Similarity=0.172 Sum_probs=52.7
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccHH
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVK 85 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~~ 85 (274)
.++|-|.|+ |.+|.++++.|.+.|+ +|++. +|++++.+.+.+.- .+ ...++.++.. .++.+.
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G~----~Vi~~-~R~~~~l~~~~~~l-------~~--~~~~~~~~~~Dl~d~~~v~ 105 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRGA----TVVAV-ARREDLLDAVADRI-------TR--AGGDAMAVPCDLSDLDAVD 105 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHHH-------Hh--cCCcEEEEEccCCCHHHHH
Confidence 367888875 9999999999999999 99999 99988776654310 00 0112222222 344566
Q ss_pred HHHHHhccccCCCCEEEEecC
Q 024016 86 DVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~~ 106 (274)
++++.+...+.+=..+|++.+
T Consensus 106 ~~~~~~~~~~g~id~li~~AG 126 (293)
T PRK05866 106 ALVADVEKRIGGVDILINNAG 126 (293)
T ss_pred HHHHHHHHHcCCCCEEEECCC
Confidence 677665544433346676543
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.016 Score=49.65 Aligned_cols=62 Identities=21% Similarity=0.181 Sum_probs=44.0
Q ss_pred eEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee----ccC---chhhc------cC-CCEEE
Q 024016 12 ILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV----LSD---NNAVV------EY-SDVVV 76 (274)
Q Consensus 12 ~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~----~~~---~~~~~------~~-aDiIi 76 (274)
+|.|+|+ |.+|+.+++.|++.|+ +|.+. .|++++... .++.. ..| ..++. +. +|.|+
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~----~V~~~-~R~~~~~~~---~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~ 72 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASV----PFLVA-SRSSSSSAG---PNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVY 72 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCC----cEEEE-eCCCccccC---CCCccccccCCCHHHHHHHHhcccCcCCceeEEE
Confidence 4788877 9999999999999999 99999 999875431 22211 112 22333 45 89999
Q ss_pred EeeCc
Q 024016 77 FSVKP 81 (274)
Q Consensus 77 l~v~~ 81 (274)
++.++
T Consensus 73 ~~~~~ 77 (285)
T TIGR03649 73 LVAPP 77 (285)
T ss_pred EeCCC
Confidence 88763
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.023 Score=49.44 Aligned_cols=98 Identities=18% Similarity=0.184 Sum_probs=57.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCC-C-----CCCcEEEEeCCCHHHHHHHHHcC-ceeccCc-----hhhc--cCCC
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGV-L-----PPDRICTAVHSNLKRRDAFESIG-VKVLSDN-----NAVV--EYSD 73 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~-~-----~~~~v~v~~~r~~~~~~~l~~~g-~~~~~~~-----~~~~--~~aD 73 (274)
|+.++|+++|+|++|+.+++-|.+++. + ...+|....+|+....+.+.-.+ ....++. .+.+ .+.|
T Consensus 1 ~~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (333)
T COG0460 1 MKTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNAEVWTTDGALSLGDEVLLDEDID 80 (333)
T ss_pred CceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccchhhheecccccccHhhhccccCC
Confidence 456799999999999999999987532 0 01133322266654443111112 1122222 3333 3568
Q ss_pred EEEEeeCc--ccHHHHHHHhccccCCCCEEEEecC
Q 024016 74 VVVFSVKP--QVVKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 74 iIil~v~~--~~~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
+|+-+++. ...++ +..+...+..|+.||+.-+
T Consensus 81 vvve~~~~d~~~~~~-~~~~~~al~~GkhVVTaNK 114 (333)
T COG0460 81 VVVELVGGDVEPAEP-ADLYLKALENGKHVVTANK 114 (333)
T ss_pred EEEecCcccCCchhh-HHHHHHHHHcCCeEECCCc
Confidence 89988865 33554 5666667778888885433
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.028 Score=50.39 Aligned_cols=67 Identities=6% Similarity=0.158 Sum_probs=46.6
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHHc-------Cceec----cC---chhhccC
Q 024016 8 AESFILGFIG-AGKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESI-------GVKVL----SD---NNAVVEY 71 (274)
Q Consensus 8 ~~~~~IgiIG-~G~mG~~~a~~L~~~-g~~~~~~v~v~~~r~~~~~~~l~~~-------g~~~~----~~---~~~~~~~ 71 (274)
.+.|||.|.| +|-+|+.+++.|++. |+ +|++. +|+.++.+.+... +++.. .+ ..+++++
T Consensus 12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~----~V~~l-~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~ 86 (386)
T PLN02427 12 IKPLTICMIGAGGFIGSHLCEKLMTETPH----KVLAL-DVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKM 86 (386)
T ss_pred ccCcEEEEECCcchHHHHHHHHHHhcCCC----EEEEE-ecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhc
Confidence 3457999997 599999999999998 57 89999 8887666554322 22221 11 2345667
Q ss_pred CCEEEEee
Q 024016 72 SDVVVFSV 79 (274)
Q Consensus 72 aDiIil~v 79 (274)
+|+||=+.
T Consensus 87 ~d~ViHlA 94 (386)
T PLN02427 87 ADLTINLA 94 (386)
T ss_pred CCEEEEcc
Confidence 89888654
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.017 Score=48.70 Aligned_cols=55 Identities=13% Similarity=0.181 Sum_probs=41.1
Q ss_pred cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhcc-CCCEEE
Q 024016 17 GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE-YSDVVV 76 (274)
Q Consensus 17 G~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~-~aDiIi 76 (274)
|+|.+|+++...|.+.|| +|++. .|++.+.+......++..+...+... ++|+||
T Consensus 6 gTGlIG~~L~~~L~~~gh----~v~il-tR~~~~~~~~~~~~v~~~~~~~~~~~~~~DavI 61 (297)
T COG1090 6 GTGLIGRALTARLRKGGH----QVTIL-TRRPPKASQNLHPNVTLWEGLADALTLGIDAVI 61 (297)
T ss_pred cccchhHHHHHHHHhCCC----eEEEE-EcCCcchhhhcCccccccchhhhcccCCCCEEE
Confidence 789999999999999999 99999 99987766544334333333344444 699888
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.055 Score=49.59 Aligned_cols=66 Identities=17% Similarity=0.196 Sum_probs=48.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH--HHHHHH--cCceeccC--chhhccCCCEEEEee
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR--RDAFES--IGVKVLSD--NNAVVEYSDVVVFSV 79 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~--~~~l~~--~g~~~~~~--~~~~~~~aDiIil~v 79 (274)
..++|.|+|.|..|.+.++.|.+.|+ +|+++ |+++.. .+++.+ .|+.+... ..+...++|+||.+.
T Consensus 4 ~~~~~~v~G~g~~G~~~a~~l~~~g~----~v~~~-d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~sp 75 (445)
T PRK04308 4 QNKKILVAGLGGTGISMIAYLRKNGA----EVAAY-DAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSP 75 (445)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECC
Confidence 45689999999999999999999999 99999 875532 344544 37655321 223346799999875
|
|
| >PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.14 Score=45.03 Aligned_cols=91 Identities=14% Similarity=0.052 Sum_probs=53.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC--CHHHHHHHHH----cC-----c--------------eec--c
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS--NLKRRDAFES----IG-----V--------------KVL--S 63 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r--~~~~~~~l~~----~g-----~--------------~~~--~ 63 (274)
+||||.|.|+||+.+.+.+.+.+. .++...++. +++....|.+ +| + .+. .
T Consensus 3 ikigInG~GRiGr~v~r~~~~~~~---~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~~ 79 (334)
T PRK08955 3 IKVGINGFGRIGRLALRAAWDWPE---LEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQNK 79 (334)
T ss_pred eEEEEECcCHHHHHHHHHHHhCCC---cEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEecC
Confidence 699999999999999999886542 156555242 4455555554 22 1 111 0
Q ss_pred Cchh-hccCCCEEEEeeCcccHHHHHHHhccccCCCCEEEEecCC
Q 024016 64 DNNA-VVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 64 ~~~~-~~~~aDiIil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g 107 (274)
++.+ ..+++|+||.|+....-++.... ++..|...|..++.
T Consensus 80 ~~~~~~w~gvDiVle~tG~~~s~~~a~~---hl~aGak~V~iSap 121 (334)
T PRK08955 80 AIADTDWSGCDVVIEASGVMKTKALLQA---YLDQGVKRVVVTAP 121 (334)
T ss_pred ChhhCCccCCCEEEEccchhhcHHHHHH---HHHCCCEEEEECCC
Confidence 2222 24489999999976655444433 23455555555443
|
|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.16 Score=45.75 Aligned_cols=68 Identities=9% Similarity=-0.031 Sum_probs=46.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-ccCc--hh-----hccCCCEEEEeeCc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-LSDN--NA-----VVEYSDVVVFSVKP 81 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~-~~~~--~~-----~~~~aDiIil~v~~ 81 (274)
+..|-|+|.|.+|..+++.|.+.|+ ++.+. +.++ .+...+.|..+ ..|+ .+ -+++|+.|++++++
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~----~vvVI-d~d~--~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~d 312 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQ----AVTVI-VPLG--LEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDN 312 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCC----CEEEE-ECch--hhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCC
Confidence 3469999999999999999999988 88888 6553 23333334322 1221 22 25689999988876
Q ss_pred ccH
Q 024016 82 QVV 84 (274)
Q Consensus 82 ~~~ 84 (274)
+..
T Consensus 313 D~~ 315 (393)
T PRK10537 313 DAD 315 (393)
T ss_pred hHH
Confidence 643
|
|
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.061 Score=45.99 Aligned_cols=73 Identities=10% Similarity=0.273 Sum_probs=54.3
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccH
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~ 84 (274)
+.+.+++.|||- ..+|.+++.-|.+.+. .|+++ +... .+..+.+++||+||.++. |..+
T Consensus 155 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~a----tVt~c-hs~t--------------~~l~~~~~~ADIvI~AvG~p~~i 215 (284)
T PRK14190 155 DISGKHVVVVGRSNIVGKPVGQLLLNENA----TVTYC-HSKT--------------KNLAELTKQADILIVAVGKPKLI 215 (284)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCC----EEEEE-eCCc--------------hhHHHHHHhCCEEEEecCCCCcC
Confidence 345689999986 6789999999998887 89888 5321 245567899999999995 4422
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
. ..++++|.+||++
T Consensus 216 ~------~~~ik~gavVIDv 229 (284)
T PRK14190 216 T------ADMVKEGAVVIDV 229 (284)
T ss_pred C------HHHcCCCCEEEEe
Confidence 1 1235799999986
|
|
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.061 Score=45.93 Aligned_cols=73 Identities=19% Similarity=0.268 Sum_probs=54.4
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccH
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~ 84 (274)
....+++.|||- ..+|.+++.-|.+.+. .|+++ +... .+..+.+++|||||.++. |..+
T Consensus 154 ~l~Gk~vvVvGrS~iVGkPla~lL~~~~a----tVtic-hs~T--------------~~l~~~~~~ADIvI~AvG~~~~i 214 (284)
T PRK14170 154 QIEGKRAVVIGRSNIVGKPVAQLLLNENA----TVTIA-HSRT--------------KDLPQVAKEADILVVATGLAKFV 214 (284)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEecCCcCcc
Confidence 345679999987 4679999999998887 89988 5321 245677889999999995 5533
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
.. ..+++|.+||++
T Consensus 215 ~~------~~vk~GavVIDv 228 (284)
T PRK14170 215 KK------DYIKPGAIVIDV 228 (284)
T ss_pred CH------HHcCCCCEEEEc
Confidence 21 236799999986
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.12 Score=43.83 Aligned_cols=81 Identities=16% Similarity=0.179 Sum_probs=52.6
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCcccHHH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~~~~~ 86 (274)
+.++|.|.|+ |.+|..+++.|.+.|+ +|.+. +|++++.+.+.+ .+ . .+ .-.+|+ ..++.+.+
T Consensus 4 ~~~~ilVtGasggiG~~la~~l~~~G~----~v~~~-~r~~~~~~~~~~~~~-~-----~~-~~~~D~----~~~~~~~~ 67 (273)
T PRK07825 4 RGKVVAITGGARGIGLATARALAALGA----RVAIG-DLDEALAKETAAELG-L-----VV-GGPLDV----TDPASFAA 67 (273)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHHhc-c-----ce-EEEccC----CCHHHHHH
Confidence 4568888876 9999999999999999 99999 999888766543 22 0 00 011221 24556667
Q ss_pred HHHHhccccCCCCEEEEec
Q 024016 87 VAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~ 105 (274)
+++++.....+=..+|+..
T Consensus 68 ~~~~~~~~~~~id~li~~a 86 (273)
T PRK07825 68 FLDAVEADLGPIDVLVNNA 86 (273)
T ss_pred HHHHHHHHcCCCCEEEECC
Confidence 7766654433334666653
|
|
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.025 Score=52.16 Aligned_cols=42 Identities=21% Similarity=0.284 Sum_probs=34.5
Q ss_pred CCCCCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 1 ~~~~~~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
|.+-+.+++.++|+|||+|.-|.+.|+.|.+.|+ +++++ .++
T Consensus 1 ~~~~~~~~~~~~VaIIGAG~aGL~aA~~l~~~G~----~v~vf-E~~ 42 (461)
T PLN02172 1 MAPAQNPINSQHVAVIGAGAAGLVAARELRREGH----TVVVF-ERE 42 (461)
T ss_pred CCCcccCCCCCCEEEECCcHHHHHHHHHHHhcCC----eEEEE-ecC
Confidence 4444566667899999999999999999999998 78777 554
|
|
| >PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.067 Score=46.01 Aligned_cols=73 Identities=12% Similarity=0.249 Sum_probs=53.5
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhC----CCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAKS----GVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK- 80 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~~----g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~- 80 (274)
+...++|.|||- ..+|.+++.-|.+. +. .|+++ .+.. .+..+.+++||+||.++.
T Consensus 158 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~a----tVtv~-hs~T--------------~~l~~~~~~ADIvVsAvGk 218 (297)
T PRK14168 158 ETSGAEVVVVGRSNIVGKPIANMMTQKGPGANA----TVTIV-HTRS--------------KNLARHCQRADILIVAAGV 218 (297)
T ss_pred CCCCCEEEEECCCCcccHHHHHHHHhcccCCCC----EEEEe-cCCC--------------cCHHHHHhhCCEEEEecCC
Confidence 445689999986 67899999999887 44 78888 5431 245677899999999994
Q ss_pred cccHHHHHHHhccccCCCCEEEEe
Q 024016 81 PQVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 81 ~~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
|..+.. ..+++|.+||++
T Consensus 219 p~~i~~------~~ik~gavVIDv 236 (297)
T PRK14168 219 PNLVKP------EWIKPGATVIDV 236 (297)
T ss_pred cCccCH------HHcCCCCEEEec
Confidence 553321 236799999986
|
|
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.065 Score=45.76 Aligned_cols=72 Identities=14% Similarity=0.299 Sum_probs=53.8
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccHH
Q 024016 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVK 85 (274)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~ 85 (274)
.+.++|.|||- ..+|.+++.-|.+.|. .|+++ ++.. .+..+.+++||+||.++. |..+.
T Consensus 156 l~Gk~vvViGrS~~VGkPla~lL~~~~A----TVt~c-hs~T--------------~dl~~~~k~ADIvIsAvGkp~~i~ 216 (282)
T PRK14180 156 TEGAYAVVVGASNVVGKPVSQLLLNAKA----TVTTC-HRFT--------------TDLKSHTTKADILIVAVGKPNFIT 216 (282)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHCCC----EEEEE-cCCC--------------CCHHHHhhhcCEEEEccCCcCcCC
Confidence 45679999986 5689999999988887 89988 5432 245566889999999995 55432
Q ss_pred HHHHHhccccCCCCEEEEe
Q 024016 86 DVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~ 104 (274)
. ..+++|.+||++
T Consensus 217 ~------~~vk~gavVIDv 229 (282)
T PRK14180 217 A------DMVKEGAVVIDV 229 (282)
T ss_pred H------HHcCCCcEEEEe
Confidence 2 236799999986
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.14 Score=42.57 Aligned_cols=83 Identities=18% Similarity=0.210 Sum_probs=53.1
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~ 84 (274)
+.++|.|+|+ |.+|..+++.|++.|+ +|++. +|++++.+.+.+. +. . ..++.++.. .++.+
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~----~V~~~-~r~~~~~~~~~~~-~~------~---~~~~~~~~~D~~~~~~~ 68 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGA----RVVVT-DRNEEAAERVAAE-IL------A---GGRAIAVAADVSDEADV 68 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-Hh------c---CCeEEEEECCCCCHHHH
Confidence 3468999975 9999999999999999 99999 9998776655431 00 0 123333332 34456
Q ss_pred HHHHHHhccccCCCCEEEEecC
Q 024016 85 KDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~~ 106 (274)
..++.++.+...+=..||+..+
T Consensus 69 ~~~~~~~~~~~~~~d~vi~~ag 90 (251)
T PRK07231 69 EAAVAAALERFGSVDILVNNAG 90 (251)
T ss_pred HHHHHHHHHHhCCCCEEEECCC
Confidence 6666665433333246676543
|
|
| >COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.057 Score=48.71 Aligned_cols=74 Identities=19% Similarity=0.282 Sum_probs=51.5
Q ss_pred CCCCeEEEEcccHHHHHH-HHHHH-hCCCCCCCcEEEEeCCCHHHHHH-------HHH-cC----ceeccCchhhccCCC
Q 024016 8 AESFILGFIGAGKMAESI-AKGVA-KSGVLPPDRICTAVHSNLKRRDA-------FES-IG----VKVLSDNNAVVEYSD 73 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~-a~~L~-~~g~~~~~~v~v~~~r~~~~~~~-------l~~-~g----~~~~~~~~~~~~~aD 73 (274)
|+++||+|||.|.-..+- ..+++ ..--++..++.++ |.++++.+. +.+ .| +..++|..+++++||
T Consensus 1 m~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~-Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~gAd 79 (442)
T COG1486 1 MKKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALY-DIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREALEGAD 79 (442)
T ss_pred CCcceEEEECCCccccHHHHHHHHhcCccCCcceEEEE-eCCHHHHHHHHHHHHHHHHhhCCCeEEEEecCHHHHhcCCC
Confidence 457899999999987653 22232 2222345588999 999888652 222 33 345688899999999
Q ss_pred EEEEeeCcc
Q 024016 74 VVVFSVKPQ 82 (274)
Q Consensus 74 iIil~v~~~ 82 (274)
+|+.+..+.
T Consensus 80 fVi~~~rvG 88 (442)
T COG1486 80 FVITQIRVG 88 (442)
T ss_pred EEEEEEeeC
Confidence 999998654
|
|
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.089 Score=44.91 Aligned_cols=72 Identities=17% Similarity=0.242 Sum_probs=53.5
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccHH
Q 024016 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVK 85 (274)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~ 85 (274)
.+.+++.|||- ..+|.+++.-|.+.+. .|+++ +... .+..+.+++||+||.++. +..+.
T Consensus 155 l~Gk~vvViGrS~iVGkPla~lL~~~~A----tVtic-hs~T--------------~nl~~~~~~ADIvI~AvGk~~~i~ 215 (282)
T PRK14182 155 PKGKRALVVGRSNIVGKPMAMMLLERHA----TVTIA-HSRT--------------ADLAGEVGRADILVAAIGKAELVK 215 (282)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEecCCcCccC
Confidence 35679999987 5679999999988887 89888 5431 234567889999999995 44332
Q ss_pred HHHHHhccccCCCCEEEEe
Q 024016 86 DVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~ 104 (274)
. ..+++|.+||++
T Consensus 216 ~------~~ik~gaiVIDv 228 (282)
T PRK14182 216 G------AWVKEGAVVIDV 228 (282)
T ss_pred H------HHcCCCCEEEEe
Confidence 1 236799999986
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.17 Score=44.55 Aligned_cols=87 Identities=18% Similarity=0.160 Sum_probs=57.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec-c----Cchhhcc---CCCEEEEeeCc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-S----DNNAVVE---YSDVVVFSVKP 81 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~-~----~~~~~~~---~aDiIil~v~~ 81 (274)
..+|.|+|+|.+|...++.+...|. .+|++. ++++++.+.+.+.|+... + +..+..+ ..|+||-|+..
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G~---~~Vi~~-~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~ 245 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLGA---AEIVCA-DVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGH 245 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC---cEEEEE-eCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCC
Confidence 4589999999999988887777776 257888 999999988888886432 1 1112111 36888888764
Q ss_pred -ccHHHHHHHhccccCCCCEEEEe
Q 024016 82 -QVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 82 -~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
..+...++- ++++..++.+
T Consensus 246 ~~~~~~~~~~----l~~~G~iv~~ 265 (343)
T PRK09880 246 PSSINTCLEV----TRAKGVMVQV 265 (343)
T ss_pred HHHHHHHHHH----hhcCCEEEEE
Confidence 334444433 3455555544
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.086 Score=48.76 Aligned_cols=35 Identities=14% Similarity=0.270 Sum_probs=31.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
...++|.|||.|..|...|..|.+.|+ +|+++ ++.
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~----~V~vi-e~~ 175 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGH----KVTVF-ERA 175 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCC----cEEEE-ecC
Confidence 345799999999999999999999999 99999 765
|
|
| >KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.23 Score=42.77 Aligned_cols=104 Identities=19% Similarity=0.278 Sum_probs=66.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH---------------H--cC--ceeccCchhhccC
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE---------------S--IG--VKVLSDNNAVVEY 71 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~---------------~--~g--~~~~~~~~~~~~~ 71 (274)
+||+-||+|-+|.+-..-+... .+.-+|++. |.+..+..... + .| +-..++.+..+.+
T Consensus 2 ~kiccigagyvggptcavia~k--cp~i~vtvv-d~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~e 78 (481)
T KOG2666|consen 2 VKICCIGAGYVGGPTCAVIALK--CPDIEVTVV-DISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKE 78 (481)
T ss_pred ceEEEecCcccCCcchheeeec--CCceEEEEE-ecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhh
Confidence 5899999999999877655432 233467777 88777755432 1 12 3355777888999
Q ss_pred CCEEEEeeC-c-c-------------cHHHHHHHhccccCCCCEEEEecCCCCH---HHHHHhhC
Q 024016 72 SDVVVFSVK-P-Q-------------VVKDVAMQIRPLLSRKKLLVSVAAGVKL---KDLQEWTG 118 (274)
Q Consensus 72 aDiIil~v~-~-~-------------~~~~v~~~i~~~l~~~~~vis~~~g~~~---~~l~~~~~ 118 (274)
+|+||+.|. | . .++.....|.+.-...++|+.- ++++. +.+...+.
T Consensus 79 adlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvek-stvpv~aaesi~~il~ 142 (481)
T KOG2666|consen 79 ADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEK-STVPVKAAESIEKILN 142 (481)
T ss_pred cceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEee-ccccchHHHHHHHHHh
Confidence 999999983 2 1 2344445566655566777743 33443 45555554
|
|
| >PRK06901 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.02 Score=49.60 Aligned_cols=92 Identities=10% Similarity=0.153 Sum_probs=58.8
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCC-HHHHHH--HHHcCceeccCchhhccCCCEEEEeeCcccH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSN-LKRRDA--FESIGVKVLSDNNAVVEYSDVVVFSVKPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~-~~~~~~--l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~ 84 (274)
..++|+| |+ |.+|..|.+.|.+..+ +-.++.++ ... .+.-+. +....+.+-.-..+..++.|++|+ .+.+..
T Consensus 2 ~~~~iAi-GATg~VG~~~l~~Leer~f-pv~~l~l~-~s~~~s~gk~i~f~g~~~~V~~l~~~~f~~vDia~f-ag~~~s 77 (322)
T PRK06901 2 ATLNIAI-AAEFELSEKLLEALEQSDL-EIEQISIV-EIEPFGEEQGIRFNNKAVEQIAPEEVEWADFNYVFF-AGKMAQ 77 (322)
T ss_pred CcceEEE-ecCcHHHHHHHHHHHhcCC-chhheeec-ccccccCCCEEEECCEEEEEEECCccCcccCCEEEE-cCHHHH
Confidence 4578999 98 9999999999998887 55566666 332 111111 111122232222334678999999 777766
Q ss_pred HHHHHHhccccCCCCEEEEecCC
Q 024016 85 KDVAMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~~g 107 (274)
++...... ..|.+||+.++.
T Consensus 78 ~~~ap~a~---~aG~~VIDnSsa 97 (322)
T PRK06901 78 AEHLAQAA---EAGCIVIDLYGI 97 (322)
T ss_pred HHHHHHHH---HCCCEEEECChH
Confidence 66655433 578999987654
|
|
| >TIGR03855 NAD_NadX aspartate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.08 Score=43.99 Aligned_cols=53 Identities=26% Similarity=0.319 Sum_probs=43.6
Q ss_pred EEEEeCCCHHHHHHHHH-cCceeccCchhhc-cCCCEEEEeeCcccHHHHHHHhcc
Q 024016 40 ICTAVHSNLKRRDAFES-IGVKVLSDNNAVV-EYSDVVVFSVKPQVVKDVAMQIRP 93 (274)
Q Consensus 40 v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~-~~aDiIil~v~~~~~~~v~~~i~~ 93 (274)
+.+| |+++++++.+.+ .|+..+++.++++ .+.|+|++|+|++...+...+...
T Consensus 5 vaV~-D~~~e~a~~~a~~~g~~~~~d~~eLl~~~vDaVviatp~~~H~e~a~~aL~ 59 (229)
T TIGR03855 5 AAVY-DRNPKDAKELAERCGAKIVSDFDEFLPEDVDIVVEAASQEAVKEYAEKILK 59 (229)
T ss_pred EEEE-CCCHHHHHHHHHHhCCceECCHHHHhcCCCCEEEECCChHHHHHHHHHHHH
Confidence 4567 999999988877 7787888888875 579999999999998888776653
|
Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur. |
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.067 Score=49.22 Aligned_cols=63 Identities=22% Similarity=0.274 Sum_probs=46.3
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH-HH----HHHHHcCceeccC--ch-----hhccCCCEEEEee
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-RR----DAFESIGVKVLSD--NN-----AVVEYSDVVVFSV 79 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~-~~----~~l~~~g~~~~~~--~~-----~~~~~aDiIil~v 79 (274)
||.|||.|..|.+.|+.|.+.|+ +|.++ |+++. .. +.+.+.|+++... .. +...+.|+|+.+-
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~----~V~~~-D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~ 76 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGW----EVVVS-DRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSP 76 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC----EEEEE-CCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECC
Confidence 79999999999999999999999 99999 87653 22 2355567765321 11 2456789988854
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.15 Score=42.72 Aligned_cols=83 Identities=17% Similarity=0.141 Sum_probs=53.1
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---Cccc
Q 024016 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQV 83 (274)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~ 83 (274)
++.+++.|+|. |.+|..+++.|++.|+ +|++. +|+++..+.+.+..- +..+.++.. .++.
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~----~V~~~-~r~~~~~~~~~~~~~-----------~~~~~~~~~D~~~~~~ 72 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGA----RVHVC-DVSEAALAATAARLP-----------GAKVTATVADVADPAQ 72 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHHHh-----------cCceEEEEccCCCHHH
Confidence 35578999965 9999999999999999 99999 998876665543210 012222222 3444
Q ss_pred HHHHHHHhccccCCCCEEEEecC
Q 024016 84 VKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
+.++++++...+.+=..||+..+
T Consensus 73 ~~~~~~~~~~~~~~~d~vi~~ag 95 (264)
T PRK12829 73 VERVFDTAVERFGGLDVLVNNAG 95 (264)
T ss_pred HHHHHHHHHHHhCCCCEEEECCC
Confidence 56666665444434356666544
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.17 Score=44.36 Aligned_cols=87 Identities=16% Similarity=0.134 Sum_probs=57.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCc-hhhccCCCEEEEeeCcccHHHHH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDN-NAVVEYSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~-~~~~~~aDiIil~v~~~~~~~v~ 88 (274)
..+|.|.|+|.+|...++.....|. +|++. ++++++.+.+++.|+...-+. ....+..|+++.++... +.+
T Consensus 166 g~~VlV~G~g~iG~~a~~~a~~~G~----~vi~~-~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~---~~~ 237 (329)
T TIGR02822 166 GGRLGLYGFGGSAHLTAQVALAQGA----TVHVM-TRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG---GLV 237 (329)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHCCC----eEEEE-eCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH---HHH
Confidence 4589999999999988877777786 78888 899999888888887532221 11123578877776432 223
Q ss_pred HHhccccCCCCEEEEe
Q 024016 89 MQIRPLLSRKKLLVSV 104 (274)
Q Consensus 89 ~~i~~~l~~~~~vis~ 104 (274)
......++++..++..
T Consensus 238 ~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 238 PPALEALDRGGVLAVA 253 (329)
T ss_pred HHHHHhhCCCcEEEEE
Confidence 3333345565566544
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.12 Score=42.89 Aligned_cols=84 Identities=14% Similarity=0.117 Sum_probs=53.3
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~ 84 (274)
+.++|.|+|. |.+|..+++.|.+.|+ +|.+. +|++++.+.+.+. + .. ...++.++.. .++.+
T Consensus 6 ~~~~vlItGa~g~iG~~la~~l~~~G~----~v~~~-~r~~~~~~~~~~~-~------~~--~~~~~~~~~~Dl~~~~~~ 71 (250)
T PRK12939 6 AGKRALVTGAARGLGAAFAEALAEAGA----TVAFN-DGLAAEARELAAA-L------EA--AGGRAHAIAADLADPASV 71 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHHHH-H------Hh--cCCcEEEEEccCCCHHHH
Confidence 3578888875 9999999999999999 99999 9998776654431 0 00 0123433333 34456
Q ss_pred HHHHHHhccccCCCCEEEEecC
Q 024016 85 KDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~~ 106 (274)
+.+++++...+.+-..+|++.+
T Consensus 72 ~~~~~~~~~~~~~id~vi~~ag 93 (250)
T PRK12939 72 QRFFDAAAAALGGLDGLVNNAG 93 (250)
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 6666665443333346676644
|
|
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.076 Score=46.71 Aligned_cols=73 Identities=14% Similarity=0.249 Sum_probs=54.3
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccH
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~ 84 (274)
+...+++.|||- ..+|.+++.-|.+.+. .|+++ .... .+..+.+++|||||.++. |..+
T Consensus 228 ~l~GK~vvVIGRS~iVGkPLa~LL~~~~A----TVTic-Hs~T--------------~nl~~~~r~ADIVIsAvGkp~~i 288 (364)
T PLN02616 228 EIKGKRAVVIGRSNIVGMPAALLLQREDA----TVSIV-HSRT--------------KNPEEITREADIIISAVGQPNMV 288 (364)
T ss_pred CCCCCEEEEECCCccccHHHHHHHHHCCC----eEEEe-CCCC--------------CCHHHHHhhCCEEEEcCCCcCcC
Confidence 345678999986 5679999999988887 88888 5331 245677899999999994 5543
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
.. ..+++|.+||++
T Consensus 289 ~~------d~vK~GAvVIDV 302 (364)
T PLN02616 289 RG------SWIKPGAVVIDV 302 (364)
T ss_pred CH------HHcCCCCEEEec
Confidence 21 236899999986
|
|
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.043 Score=50.07 Aligned_cols=63 Identities=17% Similarity=0.227 Sum_probs=45.5
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH-HHH----HHH-HcCceecc-CchhhccCCCEEEEee
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-RRD----AFE-SIGVKVLS-DNNAVVEYSDVVVFSV 79 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~-~~~----~l~-~~g~~~~~-~~~~~~~~aDiIil~v 79 (274)
||.|||.|..|.++|+.|.+.|+ +|+++ |.++. ... .+. ..|+.+.. ...+.+.++|+|+..-
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~----~V~~s-D~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~~~~~d~vv~sp 70 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGA----EVTVT-DLKPNEELEPSMGQLRLNEGSVLHTGLHLEDLNNADLVVKSP 70 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCC----EEEEE-eCCCCccchhHHHHHhhccCcEEEecCchHHhccCCEEEECC
Confidence 58999999999999999999999 99999 86543 121 122 24776532 2244567899888864
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.055 Score=48.29 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=36.2
Q ss_pred CCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH
Q 024016 5 PIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF 54 (274)
Q Consensus 5 ~~~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l 54 (274)
+..++.++|.|.|. |-+|+++++.|++.|+ +|.+. .|+.++.+.+
T Consensus 48 ~~~~~~k~VLVTGatGfIG~~lv~~L~~~G~----~V~~~-~r~~~~~~~l 93 (367)
T PLN02686 48 GADAEARLVCVTGGVSFLGLAIVDRLLRHGY----SVRIA-VDTQEDKEKL 93 (367)
T ss_pred ccCCCCCEEEEECCchHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHH
Confidence 34556788999975 9999999999999999 99887 7776655444
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.23 Score=41.59 Aligned_cols=43 Identities=12% Similarity=0.149 Sum_probs=36.4
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024016 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (274)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~ 55 (274)
++.++|-|+|+ |.+|.++++.|.+.|+ +|++. +|++.+.+.+.
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~----~v~~~-~r~~~~~~~~~ 48 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGA----TVVVG-DIDPEAGKAAA 48 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHH
Confidence 45678999987 9999999999999999 99999 99887665544
|
|
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.2 Score=43.60 Aligned_cols=76 Identities=14% Similarity=0.238 Sum_probs=56.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCch----------hhcc-CCCEEEEee
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNN----------AVVE-YSDVVVFSV 79 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~----------~~~~-~aDiIil~v 79 (274)
.+++|+|+|.+|.+-..+....|- ..|+.. |.+++|.+...++|++-.-++. ++.. .+|..|-|+
T Consensus 187 ~tvaV~GlGgVGlaaI~gA~~agA---~~IiAv-D~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~e~~ 262 (366)
T COG1062 187 DTVAVFGLGGVGLAAIQGAKAAGA---GRIIAV-DINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGADYAFECV 262 (366)
T ss_pred CeEEEEeccHhHHHHHHHHHHcCC---ceEEEE-eCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcCCCCCEEEEcc
Confidence 579999999999999999999886 378888 9999999988889986432332 2233 578888887
Q ss_pred -CcccHHHHHHH
Q 024016 80 -KPQVVKDVAMQ 90 (274)
Q Consensus 80 -~~~~~~~v~~~ 90 (274)
..+.++..+.-
T Consensus 263 G~~~~~~~al~~ 274 (366)
T COG1062 263 GNVEVMRQALEA 274 (366)
T ss_pred CCHHHHHHHHHH
Confidence 35555555543
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.27 Score=40.40 Aligned_cols=84 Identities=15% Similarity=0.215 Sum_probs=51.8
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee-CcccHHH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV-KPQVVKD 86 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v-~~~~~~~ 86 (274)
+.++|.|.|. |.+|..+++.|++.|+ +|++. +|++++..+..+. .. ....+++..-+ ..+.+..
T Consensus 6 ~~k~vlItGatg~iG~~la~~l~~~G~----~v~~~-~r~~~~~~~~~~~-~~--------~~~~~~~~~D~~~~~~~~~ 71 (239)
T PRK12828 6 QGKVVAITGGFGGLGRATAAWLAARGA----RVALI-GRGAAPLSQTLPG-VP--------ADALRIGGIDLVDPQAARR 71 (239)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHCCC----eEEEE-eCChHhHHHHHHH-Hh--------hcCceEEEeecCCHHHHHH
Confidence 4568999975 9999999999999999 99999 9988665433220 00 01122222222 2445666
Q ss_pred HHHHhccccCCCCEEEEecC
Q 024016 87 VAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~~ 106 (274)
+++++.....+-..|++..+
T Consensus 72 ~~~~~~~~~~~~d~vi~~ag 91 (239)
T PRK12828 72 AVDEVNRQFGRLDALVNIAG 91 (239)
T ss_pred HHHHHHHHhCCcCEEEECCc
Confidence 66666544433346666543
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.14 Score=43.10 Aligned_cols=85 Identities=18% Similarity=0.189 Sum_probs=53.6
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---Cccc
Q 024016 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQV 83 (274)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~ 83 (274)
++.+++-|.|. |.+|.++++.|++.|+ +|.+. +|++++.+.+.+.- . + ...++.++.+ .++.
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~----~Vi~~-~r~~~~~~~~~~~l-~------~--~~~~~~~~~~D~~~~~~ 73 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGA----DVLIA-ARTESQLDEVAEQI-R------A--AGRRAHVVAADLAHPEA 73 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHHH-H------h--cCCcEEEEEccCCCHHH
Confidence 45678888865 6899999999999999 99999 99987766554310 0 0 0112222222 3455
Q ss_pred HHHHHHHhccccCCCCEEEEecC
Q 024016 84 VKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
+..+++++...+.+=..+|+..+
T Consensus 74 ~~~~~~~~~~~~~~id~vi~~Ag 96 (263)
T PRK07814 74 TAGLAGQAVEAFGRLDIVVNNVG 96 (263)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 66677666544433346777643
|
|
| >smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.063 Score=41.45 Aligned_cols=43 Identities=7% Similarity=0.119 Sum_probs=30.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC-CHHHHHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFES 56 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r-~~~~~~~l~~ 56 (274)
+||+|+|+|+||..+++.+.+... .++...+++ +++....+.+
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~---~~lvai~d~~~~~~~a~ll~ 44 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPD---IEVVAINDLTDPETLAHLLK 44 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC---CEEEEeecCCCHHHHHHHhc
Confidence 489999999999999998875432 166554363 6666666655
|
GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold. |
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.22 Score=41.91 Aligned_cols=79 Identities=13% Similarity=0.270 Sum_probs=51.8
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEee---Cccc
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSV---KPQV 83 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v---~~~~ 83 (274)
+.+++-|.|. |.+|.++++.|.+.|+ +|++. +|++++.+++.+ .+ ..+.++.. ..+.
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~~~~~-------------~~~~~~~~Dl~~~~~ 66 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGA----RVAIV-DIDADNGAAVAASLG-------------ERARFIATDITDDAA 66 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHHhC-------------CeeEEEEecCCCHHH
Confidence 4467878875 9999999999999999 99999 999877666543 11 12222222 3445
Q ss_pred HHHHHHHhccccCCCCEEEEec
Q 024016 84 VKDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~~ 105 (274)
+.+++.++...+.+=..+|+..
T Consensus 67 ~~~~~~~~~~~~g~id~lv~~a 88 (261)
T PRK08265 67 IERAVATVVARFGRVDILVNLA 88 (261)
T ss_pred HHHHHHHHHHHhCCCCEEEECC
Confidence 6666666654433334566653
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.21 Score=42.08 Aligned_cols=87 Identities=11% Similarity=0.098 Sum_probs=54.0
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---Cccc
Q 024016 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQV 83 (274)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~ 83 (274)
++.+++-|.|+ |.+|.++++.|.+.|+ +|++. +|++++.+.+.+. ..+...+.++.++.+ .++.
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-------~~~~~~~~~~~~~~~D~~~~~~ 73 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA----SVAIC-GRDEERLASAEAR-------LREKFPGARLLAARCDVLDEAD 73 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHH-------HHhhCCCceEEEEEecCCCHHH
Confidence 44567777766 7899999999999999 99999 9998776654431 000011123333333 3445
Q ss_pred HHHHHHHhccccCCCCEEEEecC
Q 024016 84 VKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
+.++++++...+.+=..+|+..+
T Consensus 74 v~~~~~~~~~~~g~id~li~~Ag 96 (265)
T PRK07062 74 VAAFAAAVEARFGGVDMLVNNAG 96 (265)
T ss_pred HHHHHHHHHHhcCCCCEEEECCC
Confidence 66777766544433346776543
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.066 Score=46.33 Aligned_cols=64 Identities=13% Similarity=0.159 Sum_probs=51.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP 81 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~ 81 (274)
..+|+|||.-.=-..+++.|.+.|+ +|.++ .-..+. ....|+.+.++..+++.++|+|++.+|+
T Consensus 2 ~~~~~v~ggd~r~~~~~~~l~~~G~----~v~~~-g~~~~~---~~~~g~~~~~~~~~~~~~ad~ii~~~p~ 65 (296)
T PRK08306 2 GKHIAVIGGDARQLELIRKLVELGA----KVSLV-GFDQLD---HGFTGATKSSSLEEALSDVDVIILPVPG 65 (296)
T ss_pred CcEEEEEcCcHHHHHHHHHHHHCCC----EEEEE-eccccc---cccCCceeeccHHHHhccCCEEEECCcc
Confidence 4689999999999999999999999 99887 443221 1235888887778889999999999875
|
|
| >TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.061 Score=50.46 Aligned_cols=72 Identities=13% Similarity=0.141 Sum_probs=46.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH---HHHH------cCc--ee-----ccCchhhccCCC
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD---AFES------IGV--KV-----LSDNNAVVEYSD 73 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~---~l~~------~g~--~~-----~~~~~~~~~~aD 73 (274)
..||+|||+|.+|++++..|...|. ..-....+ |+.+.... ++.+ .++ +. ..+..++++..|
T Consensus 129 ~akVlVlG~Gg~~s~lv~sL~~sG~-~~I~~vd~-D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~ev~~~~D 206 (637)
T TIGR03693 129 NAKILAAGSGDFLTKLVRSLIDSGF-PRFHAIVT-DAEEHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHEAFEPAD 206 (637)
T ss_pred cccEEEEecCchHHHHHHHHHhcCC-CcEEEEec-cccchhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHHhhcCCc
Confidence 4689999999999999999999997 21122334 54433222 2222 122 11 233456788999
Q ss_pred EEEEeeCccc
Q 024016 74 VVVFSVKPQV 83 (274)
Q Consensus 74 iIil~v~~~~ 83 (274)
+|+..+.+..
T Consensus 207 iVi~vsDdy~ 216 (637)
T TIGR03693 207 WVLYVSDNGD 216 (637)
T ss_pred EEEEECCCCC
Confidence 9999986443
|
Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein. |
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.15 Score=43.32 Aligned_cols=48 Identities=10% Similarity=0.163 Sum_probs=36.8
Q ss_pred CCCCCCCCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH
Q 024016 2 DAFPIPAESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF 54 (274)
Q Consensus 2 ~~~~~~~~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l 54 (274)
.-+++..+.+++.|.| .|.+|.++++.|.+.|+ +|.+. .|++++.+.+
T Consensus 2 ~~~~~~~~~~~vlVtGa~g~iG~~la~~L~~~G~----~V~~~-~r~~~~~~~~ 50 (274)
T PRK07775 2 PRFEPHPDRRPALVAGASSGIGAATAIELAAAGF----PVALG-ARRVEKCEEL 50 (274)
T ss_pred CCCCCCCCCCEEEEECCCchHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHH
Confidence 3344444556788887 59999999999999998 89888 8887665543
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.019 Score=51.72 Aligned_cols=38 Identities=11% Similarity=0.291 Sum_probs=33.0
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH
Q 024016 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKR 50 (274)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~ 50 (274)
.+.+||.|+|. |.+|+.+++.|++.|+ +|++. .|++++
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~----~V~~l-~R~~~~ 96 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGY----NVVAV-AREKSG 96 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-Eechhh
Confidence 34579999975 9999999999999999 99999 888754
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.14 Score=43.41 Aligned_cols=83 Identities=16% Similarity=0.191 Sum_probs=49.0
Q ss_pred CCCCeEEEEccc---HHHHHHHHHHHhCCCCCCCcEEEEeCCCHH---HHHHHHHcCceeccCchhhccCCCEEEEeeCc
Q 024016 8 AESFILGFIGAG---KMAESIAKGVAKSGVLPPDRICTAVHSNLK---RRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP 81 (274)
Q Consensus 8 ~~~~~IgiIG~G---~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~---~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~ 81 (274)
++.+++-|.|.+ .+|.++++.|.+.|+ +|++. +|+.. ..+.+.... ... ..-.+|+ ..+
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~----~vil~-~r~~~~~~~~~~~~~~~----~~~--~~~~~Dl----~~~ 68 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGA----ELAFT-YQNDKLKGRVEEFAAQL----GSD--IVLPCDV----AED 68 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCC----EEEEE-ecchhHHHHHHHHHhcc----CCc--eEeecCC----CCH
Confidence 455678888986 599999999999999 89888 78732 222222110 000 0011222 245
Q ss_pred ccHHHHHHHhccccCCCCEEEEec
Q 024016 82 QVVKDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 82 ~~~~~v~~~i~~~l~~~~~vis~~ 105 (274)
+.++.++.++...+.+=.++|+..
T Consensus 69 ~~v~~~~~~~~~~~g~iD~linnA 92 (262)
T PRK07984 69 ASIDAMFAELGKVWPKFDGFVHSI 92 (262)
T ss_pred HHHHHHHHHHHhhcCCCCEEEECC
Confidence 567777777655443324667654
|
|
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.094 Score=44.89 Aligned_cols=73 Identities=15% Similarity=0.380 Sum_probs=53.7
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhC----CCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAKS----GVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK- 80 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~~----g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~- 80 (274)
+...+++.|||- ..+|.+++.-|.+. +. .|+++ ++.. .+..+.+++||+||.++.
T Consensus 150 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~A----tVtvc-hs~T--------------~~l~~~~~~ADIvV~AvG~ 210 (287)
T PRK14181 150 PLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNA----TVTLL-HSQS--------------ENLTEILKTADIIIAAIGV 210 (287)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHhCcCCCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEccCC
Confidence 345689999987 56799999999887 55 88888 5421 245677889999999995
Q ss_pred cccHHHHHHHhccccCCCCEEEEe
Q 024016 81 PQVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 81 ~~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
|..+.. ..+++|.+||++
T Consensus 211 p~~i~~------~~ik~GavVIDv 228 (287)
T PRK14181 211 PLFIKE------EMIAEKAVIVDV 228 (287)
T ss_pred cCccCH------HHcCCCCEEEEe
Confidence 543321 236799999986
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.1 Score=43.67 Aligned_cols=84 Identities=17% Similarity=0.187 Sum_probs=53.0
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~ 84 (274)
+.+++.|.|+ |.+|..+++.|++.|+ +|.+. +|++++.+.+.+. +. + ..+++.++-. .++.+
T Consensus 6 ~~~~vlItGasg~iG~~la~~l~~~G~----~v~~~-~r~~~~~~~~~~~-~~------~--~~~~~~~~~~Dl~~~~~~ 71 (262)
T PRK13394 6 NGKTAVVTGAASGIGKEIALELARAGA----AVAIA-DLNQDGANAVADE-IN------K--AGGKAIGVAMDVTNEDAV 71 (262)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC----eEEEE-eCChHHHHHHHHH-HH------h--cCceEEEEECCCCCHHHH
Confidence 4567888877 9999999999999999 99999 9998766554431 00 0 0122333222 34456
Q ss_pred HHHHHHhccccCCCCEEEEecC
Q 024016 85 KDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~~ 106 (274)
.+++.++.....+-..+|++.+
T Consensus 72 ~~~~~~~~~~~~~~d~vi~~ag 93 (262)
T PRK13394 72 NAGIDKVAERFGSVDILVSNAG 93 (262)
T ss_pred HHHHHHHHHHcCCCCEEEECCc
Confidence 6666665543333356776644
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.14 Score=42.95 Aligned_cols=81 Identities=9% Similarity=0.161 Sum_probs=50.1
Q ss_pred CCCCeEEEEccc---HHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEe---eCc
Q 024016 8 AESFILGFIGAG---KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFS---VKP 81 (274)
Q Consensus 8 ~~~~~IgiIG~G---~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~---v~~ 81 (274)
++.+++-|.|.+ .+|.++++.|.+.|+ +|++. .|+.+..+.+.+.. . .++.++. ..+
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~----~Vi~~-~r~~~~~~~~~~~~----~--------~~~~~~~~Dl~~~ 67 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGA----TVIYT-YQNDRMKKSLQKLV----D--------EEDLLVECDVASD 67 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCC----EEEEe-cCchHHHHHHHhhc----c--------CceeEEeCCCCCH
Confidence 455677788885 799999999999999 99998 88743222222211 0 1122222 245
Q ss_pred ccHHHHHHHhccccCCCCEEEEec
Q 024016 82 QVVKDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 82 ~~~~~v~~~i~~~l~~~~~vis~~ 105 (274)
+.++++++.+...+.+=.++|+..
T Consensus 68 ~~v~~~~~~~~~~~g~iD~lv~nA 91 (252)
T PRK06079 68 ESIERAFATIKERVGKIDGIVHAI 91 (252)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEcc
Confidence 667777777665443334666653
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.13 Score=42.58 Aligned_cols=82 Identities=13% Similarity=0.173 Sum_probs=51.5
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccHH
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVK 85 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~~ 85 (274)
++++.|.|. |.+|..+++.|++.|+ +|++. +|++++.+.+.+. + .+ ...++.++.. .++.+.
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~~~-~------~~--~~~~~~~~~~D~~~~~~~~ 71 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAGW----DLALV-ARSQDALEALAAE-L------RS--TGVKAAAYSIDLSNPEAIA 71 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-H------Hh--CCCcEEEEEccCCCHHHHH
Confidence 457888875 9999999999999998 99999 9998776554431 0 01 1123434433 344555
Q ss_pred HHHHHhccccCCCCEEEEec
Q 024016 86 DVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~ 105 (274)
.+++.+.....+=..+|+..
T Consensus 72 ~~~~~~~~~~~~id~lv~~a 91 (241)
T PRK07454 72 PGIAELLEQFGCPDVLINNA 91 (241)
T ss_pred HHHHHHHHHcCCCCEEEECC
Confidence 66666554333334666654
|
|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.091 Score=45.99 Aligned_cols=73 Identities=15% Similarity=0.247 Sum_probs=54.0
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccH
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~ 84 (274)
+.+.+++.|||- ..+|.+++.-|.+++. .|+++ .... .+..+.+++|||||.++. |..+
T Consensus 211 ~l~GK~vvVIGRS~iVGkPla~LL~~~~A----TVTic-Hs~T--------------~nl~~~~~~ADIvIsAvGkp~~v 271 (345)
T PLN02897 211 EIAGKNAVVIGRSNIVGLPMSLLLQRHDA----TVSTV-HAFT--------------KDPEQITRKADIVIAAAGIPNLV 271 (345)
T ss_pred CCCCCEEEEECCCccccHHHHHHHHHCCC----EEEEE-cCCC--------------CCHHHHHhhCCEEEEccCCcCcc
Confidence 345678999987 4679999998888887 88888 5321 245667899999999995 5543
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
.. ..+++|.+||++
T Consensus 272 ~~------d~vk~GavVIDV 285 (345)
T PLN02897 272 RG------SWLKPGAVVIDV 285 (345)
T ss_pred CH------HHcCCCCEEEEc
Confidence 21 236799999986
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.078 Score=44.32 Aligned_cols=43 Identities=16% Similarity=0.198 Sum_probs=36.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcC
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG 58 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g 58 (274)
++|.|.|+ |.+|.++++.|.+.|+ +|.+. +|++++.+.+.+.+
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~----~v~~~-~r~~~~~~~~~~~~ 46 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGY----RVLAA-CRKPDDVARMNSLG 46 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHhHHHHhCC
Confidence 47999998 9999999999999998 99999 99988776654433
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.1 Score=44.41 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=34.5
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024016 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (274)
Q Consensus 9 ~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~ 55 (274)
+.+++-|.| .|.+|.++++.|.+.|+ +|+++ +|+++..+.+.
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~ 44 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGY----LVIAT-MRNPEKQENLL 44 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCC----EEEEE-eCCHHHHHHHH
Confidence 345677776 59999999999999999 99999 89987766554
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.088 Score=46.58 Aligned_cols=68 Identities=13% Similarity=0.134 Sum_probs=46.8
Q ss_pred CCCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----cCceec-cC------chhhccCCC
Q 024016 7 PAESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IGVKVL-SD------NNAVVEYSD 73 (274)
Q Consensus 7 ~~~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-----~g~~~~-~~------~~~~~~~aD 73 (274)
..+.|||.|.| +|-+|+.+++.|++.|+ +|++. +|++++.+.+.. .++... .| ..+++++.|
T Consensus 7 ~~~~~~vLVtG~~GfIG~~l~~~L~~~G~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d 81 (353)
T PLN02896 7 ESATGTYCVTGATGYIGSWLVKLLLQRGY----TVHAT-LRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCD 81 (353)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-eCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCC
Confidence 34567999998 59999999999999999 99988 888766544432 122211 11 233456788
Q ss_pred EEEEee
Q 024016 74 VVVFSV 79 (274)
Q Consensus 74 iIil~v 79 (274)
.||-+.
T Consensus 82 ~Vih~A 87 (353)
T PLN02896 82 GVFHVA 87 (353)
T ss_pred EEEECC
Confidence 877654
|
|
| >PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2 | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.13 Score=40.11 Aligned_cols=67 Identities=18% Similarity=0.270 Sum_probs=48.3
Q ss_pred CCeEEEEcc--cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH-------HHH----HHHcC--ceeccCchhhccCCCE
Q 024016 10 SFILGFIGA--GKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-------RDA----FESIG--VKVLSDNNAVVEYSDV 74 (274)
Q Consensus 10 ~~~IgiIG~--G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~-------~~~----l~~~g--~~~~~~~~~~~~~aDi 74 (274)
..||++||= +++..+++..+.+-|. ++++. ....-. .+. +.+.| +++.++..++++++|+
T Consensus 2 gl~i~~vGD~~~rv~~Sl~~~~~~~g~----~~~~~-~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDv 76 (158)
T PF00185_consen 2 GLKIAYVGDGHNRVAHSLIELLAKFGM----EVVLI-APEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADV 76 (158)
T ss_dssp TEEEEEESSTTSHHHHHHHHHHHHTTS----EEEEE-SSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SE
T ss_pred CCEEEEECCCCChHHHHHHHHHHHcCC----EEEEE-CCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCE
Confidence 469999993 8999999999999998 88887 554411 111 11234 4677888899999999
Q ss_pred EEEeeCc
Q 024016 75 VVFSVKP 81 (274)
Q Consensus 75 Iil~v~~ 81 (274)
|+.-.-.
T Consensus 77 vy~~~~~ 83 (158)
T PF00185_consen 77 VYTDRWQ 83 (158)
T ss_dssp EEEESSS
T ss_pred EEEcCcc
Confidence 8887633
|
1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A .... |
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.28 Score=41.14 Aligned_cols=41 Identities=20% Similarity=0.105 Sum_probs=35.1
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH
Q 024016 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (274)
Q Consensus 11 ~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~ 56 (274)
+++-|+| .|.+|..+++.|++.|+ +|.+. +|++++.+.+.+
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~~ 43 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW----RVGAY-DINEAGLAALAA 43 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHH
Confidence 4688886 59999999999999998 99999 999888776654
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.093 Score=44.70 Aligned_cols=44 Identities=16% Similarity=0.217 Sum_probs=37.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcC
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG 58 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g 58 (274)
+++|.|.|+ |.+|.++++.|.+.|+ +|++. +|++++.+.+.+.+
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~----~Vi~~-~r~~~~~~~l~~~~ 48 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGW----RVFAT-CRKEEDVAALEAEG 48 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHCC
Confidence 357888887 9999999999999999 99999 99988877766543
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.21 Score=41.74 Aligned_cols=43 Identities=19% Similarity=0.315 Sum_probs=36.4
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~ 56 (274)
..++|-|.|. |.+|.++++.|.+.|+ +|++. +|++++.+.+.+
T Consensus 8 ~~k~ilItGasg~IG~~~a~~l~~~G~----~Vi~~-~r~~~~~~~~~~ 51 (258)
T PRK06949 8 EGKVALVTGASSGLGARFAQVLAQAGA----KVVLA-SRRVERLKELRA 51 (258)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHH
Confidence 3478888875 9999999999999998 99999 999887766543
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.32 Score=40.31 Aligned_cols=41 Identities=12% Similarity=0.116 Sum_probs=34.5
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~ 55 (274)
.++|.|.|+ |.+|.++++.|.+.|+ +|++. +|++++.+++.
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~----~v~~~-~r~~~~~~~~~ 47 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEGA----RVAIT-GRDPASLEAAR 47 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC----EEEEe-cCCHHHHHHHH
Confidence 458888876 9999999999999998 99999 99877665544
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.046 Score=49.06 Aligned_cols=36 Identities=11% Similarity=-0.087 Sum_probs=32.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
|+.++|.|||+|.-|.+.|..|.+.|+ +|+++ +|.+
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~----~v~v~-E~~~ 39 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGW----DVDVF-ERSP 39 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCC----CEEEE-ecCC
Confidence 455799999999999999999999999 99999 8765
|
|
| >PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.12 Score=44.33 Aligned_cols=77 Identities=12% Similarity=0.188 Sum_probs=54.1
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccH
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~ 84 (274)
+...+++.|||- ..+|.+++.-|.+.|+.....|+++ .... .+..+.+++||+||.++. |..+
T Consensus 154 ~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvc-hs~T--------------~nl~~~~~~ADIvIsAvGkp~~i 218 (293)
T PRK14185 154 ETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVC-HSRS--------------KNLKKECLEADIIIAALGQPEFV 218 (293)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEe-cCCC--------------CCHHHHHhhCCEEEEccCCcCcc
Confidence 345689999987 5679999999988742111278888 4321 245677889999999994 5543
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
.. ..+++|.+||++
T Consensus 219 ~~------~~vk~gavVIDv 232 (293)
T PRK14185 219 KA------DMVKEGAVVIDV 232 (293)
T ss_pred CH------HHcCCCCEEEEe
Confidence 21 246799999986
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.038 Score=49.94 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=30.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
.+|.|||.|.+|.+.|..|.+.|+ +|+++ +|..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~----~V~vl-e~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY----QVTVF-DRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC----eEEEE-eCCC
Confidence 489999999999999999999998 99999 8864
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.078 Score=46.06 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=31.1
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH
Q 024016 10 SFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR 50 (274)
Q Consensus 10 ~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~ 50 (274)
.++|.|.| +|-+|+.+++.|++.|+ +|.+. .|+++.
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~----~V~~~-~r~~~~ 40 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGY----TVKAT-VRDPND 40 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCC----EEEEE-EcCCCc
Confidence 46899998 69999999999999999 99888 776543
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.051 Score=36.97 Aligned_cols=32 Identities=19% Similarity=0.254 Sum_probs=28.9
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
||.|||.|..|.-+|..|.+.|. +|+++ .|++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~----~vtli-~~~~ 32 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK----EVTLI-ERSD 32 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS----EEEEE-ESSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCc----EEEEE-eccc
Confidence 68999999999999999999998 99998 6654
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.15 Score=46.48 Aligned_cols=115 Identities=13% Similarity=0.105 Sum_probs=65.3
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeC----------CCHHHHHHHHH-c-----------CceeccC
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVH----------SNLKRRDAFES-I-----------GVKVLSD 64 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~----------r~~~~~~~l~~-~-----------g~~~~~~ 64 (274)
..+.+||+|.|.|++|+..|+.|.+.|. .|+...| -+.+.+.+.++ . +++.. +
T Consensus 229 ~l~g~rVaIqGfGnVG~~~A~~L~~~Ga----kVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i-~ 303 (445)
T PRK09414 229 SFEGKRVVVSGSGNVAIYAIEKAQQLGA----KVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYL-E 303 (445)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeec-C
Confidence 3456899999999999999999999997 6664425 34443333322 1 22222 2
Q ss_pred chhhcc-CCCEEEEeeCcccH-HHHHHHhccccCCCCEEEEecCCCCHHHHHHhhCCCceEEEcCCc
Q 024016 65 NNAVVE-YSDVVVFSVKPQVV-KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNT 129 (274)
Q Consensus 65 ~~~~~~-~aDiIil~v~~~~~-~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~~~~~~~~~p~~ 129 (274)
+.++.. +|||++-|...+.+ .+-...+.+ +.-++|+--.++-....-.+.+.. +-+-+.|..
T Consensus 304 ~~~i~~~d~DVliPaAl~n~It~~~a~~i~~--~~akiIvEgAN~p~t~~A~~~L~~-rGI~~vPD~ 367 (445)
T PRK09414 304 GGSPWSVPCDIALPCATQNELDEEDAKTLIA--NGVKAVAEGANMPSTPEAIEVFLE-AGVLFAPGK 367 (445)
T ss_pred CccccccCCcEEEecCCcCcCCHHHHHHHHH--cCCeEEEcCCCCCCCHHHHHHHHH-CCcEEECch
Confidence 333333 79999999875554 344445532 122466655554333333333432 334455654
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.041 Score=49.43 Aligned_cols=36 Identities=14% Similarity=0.200 Sum_probs=32.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK 49 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~ 49 (274)
+.++|.|||.|..|.++|..|.+.|+ +|+++ +|.++
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~----~v~v~-Er~~~ 38 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGI----KVKLL-EQAAE 38 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCC----cEEEE-eeCcc
Confidence 34689999999999999999999999 99999 87654
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.099 Score=43.33 Aligned_cols=44 Identities=20% Similarity=0.236 Sum_probs=37.5
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH
Q 024016 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (274)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~ 56 (274)
++.+++.|.|. |.+|..+++.|.+.|+ +|++. +|++++.+.+.+
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~----~V~~~-~r~~~~~~~~~~ 51 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQRGA----RVVAA-ARNAAALDRLAG 51 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHH
Confidence 44578999987 8999999999999999 99999 999887766654
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.3 Score=41.04 Aligned_cols=43 Identities=12% Similarity=0.238 Sum_probs=35.6
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~ 56 (274)
+.+++-|.|. |.+|.++++.|.+.|+ +|++. +|+.++.+++.+
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~----~V~~~-~r~~~~~~~l~~ 47 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRFVAEGA----RVAVL-DKSAAGLQELEA 47 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHh
Confidence 4567777765 7899999999999999 99999 999887776653
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.082 Score=46.23 Aligned_cols=68 Identities=16% Similarity=0.149 Sum_probs=55.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCccc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV 83 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~ 83 (274)
.+++.|.|.|-.|..+|.++...|. +|.|+ ..+|-++-+..=.|.++. ...+++..+|++|.|+-...
T Consensus 209 GK~vVV~GYG~vGrG~A~~~rg~GA----~ViVt-EvDPI~AleA~MdGf~V~-~m~~Aa~~gDifiT~TGnkd 276 (420)
T COG0499 209 GKNVVVAGYGWVGRGIAMRLRGMGA----RVIVT-EVDPIRALEAAMDGFRVM-TMEEAAKTGDIFVTATGNKD 276 (420)
T ss_pred CceEEEecccccchHHHHHhhcCCC----eEEEE-ecCchHHHHHhhcCcEEE-EhHHhhhcCCEEEEccCCcC
Confidence 4678888999999999999999998 99999 888866544433688775 45778889999999996443
|
|
| >PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.11 Score=47.67 Aligned_cols=64 Identities=16% Similarity=0.108 Sum_probs=45.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhC--CCCCCCcEEEEeCCCHH--HHHHHHHcCceec-c-CchhhccCCCEEEEee
Q 024016 10 SFILGFIGAGKMAESIAKGVAKS--GVLPPDRICTAVHSNLK--RRDAFESIGVKVL-S-DNNAVVEYSDVVVFSV 79 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~--g~~~~~~v~v~~~r~~~--~~~~l~~~g~~~~-~-~~~~~~~~aDiIil~v 79 (274)
.++|.|||.|..|.+-++.|++. |+ +|+++ |.++. ..+.|.+ |+.+. . ...+.+.++|+|+..-
T Consensus 7 ~~~v~viG~G~sG~s~~~~l~~~~~~~----~v~~~-D~~~~~~~~~~l~~-g~~~~~g~~~~~~~~~~d~vV~Sp 76 (438)
T PRK04663 7 IKNVVVVGLGITGLSVVKHLRKYQPQL----TVKVI-DTRETPPGQEQLPE-DVELHSGGWNLEWLLEADLVVTNP 76 (438)
T ss_pred CceEEEEeccHHHHHHHHHHHhcCCCC----eEEEE-eCCCCchhHHHhhc-CCEEEeCCCChHHhccCCEEEECC
Confidence 36899999999999999999988 56 89999 86542 2234543 77653 2 1334467899888764
|
|
| >TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.24 Score=41.47 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=22.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSG 33 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g 33 (274)
+..||.|||+|..|+.++.+|...|
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G 34 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLH 34 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHcc
Confidence 4579999999999999999999875
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein. |
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.071 Score=46.83 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=31.6
Q ss_pred CCCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH
Q 024016 7 PAESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLK 49 (274)
Q Consensus 7 ~~~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~ 49 (274)
|+++++|.|.| +|-+|+.+++.|++.|+ +|.+. .|+.+
T Consensus 6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g~----~V~~~-~r~~~ 44 (338)
T PLN00198 6 PTGKKTACVIGGTGFLASLLIKLLLQKGY----AVNTT-VRDPE 44 (338)
T ss_pred CCCCCeEEEECCchHHHHHHHHHHHHCCC----EEEEE-ECCCC
Confidence 34568999997 79999999999999999 88777 66654
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.47 Score=39.66 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=35.4
Q ss_pred CCCCC-CCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024016 5 PIPAE-SFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (274)
Q Consensus 5 ~~~~~-~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~ 55 (274)
|++.. .++|-|.| .|.+|..+++.|.+.|+ +|.+. +|++++.+.+.
T Consensus 4 ~~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~----~v~~~-~~~~~~~~~~~ 51 (255)
T PRK05717 4 PNPGHNGRVALVTGAARGIGLGIAAWLIAEGW----QVVLA-DLDRERGSKVA 51 (255)
T ss_pred CCcccCCCEEEEeCCcchHHHHHHHHHHHcCC----EEEEE-cCCHHHHHHHH
Confidence 44443 35677776 59999999999999998 99998 88877665543
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.081 Score=46.01 Aligned_cols=77 Identities=18% Similarity=0.224 Sum_probs=50.2
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------------------HHHH----HHHH--cCcee--c--
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRD----AFES--IGVKV--L-- 62 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-------------------~~~~----~l~~--~g~~~--~-- 62 (274)
||.|||+|.+|+.++++|...|. .+++++ |.+. .|++ .+.+ ..+.+ .
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gv---g~ItIv-D~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~ 76 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGF---GEIHII-DLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHA 76 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcC---CeEEEE-cCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEec
Confidence 68999999999999999999997 367777 5422 1122 2222 12222 1
Q ss_pred --cC---chhhccCCCEEEEeeCcccHHHHHHHhc
Q 024016 63 --SD---NNAVVEYSDVVVFSVKPQVVKDVAMQIR 92 (274)
Q Consensus 63 --~~---~~~~~~~aDiIil~v~~~~~~~v~~~i~ 92 (274)
.+ ..+..++.|+|+.|+.....+..+.++.
T Consensus 77 ~i~~~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c 111 (312)
T cd01489 77 NIKDPDFNVEFFKQFDLVFNALDNLAARRHVNKMC 111 (312)
T ss_pred cCCCccchHHHHhcCCEEEECCCCHHHHHHHHHHH
Confidence 11 2356778999999997666666565544
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.17 Score=42.35 Aligned_cols=83 Identities=17% Similarity=0.169 Sum_probs=52.7
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~ 84 (274)
+.+++-|.|. |.+|.++++.|.+.|+ +|.+. +|++++.+.+.+. +. + ...++.++.. .++.+
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-l~------~--~~~~~~~~~~D~~~~~~~ 73 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGA----QVAIA-ARHLDALEKLADE-IG------T--SGGKVVPVCCDVSQHQQV 73 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHHH-HH------h--cCCeEEEEEccCCCHHHH
Confidence 4567878876 8999999999999999 99999 9998877665431 00 0 0112222222 34556
Q ss_pred HHHHHHhccccCCCCEEEEec
Q 024016 85 KDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~ 105 (274)
.++++++...+.+=..+|+..
T Consensus 74 ~~~~~~~~~~~g~id~lv~~a 94 (253)
T PRK05867 74 TSMLDQVTAELGGIDIAVCNA 94 (253)
T ss_pred HHHHHHHHHHhCCCCEEEECC
Confidence 677766654443334666654
|
|
| >PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.072 Score=48.18 Aligned_cols=63 Identities=17% Similarity=0.198 Sum_probs=44.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhc--cCCCEEEEe--eCcc
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVV--EYSDVVVFS--VKPQ 82 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~--~~aDiIil~--v~~~ 82 (274)
|+|.|+|+|.-|.+.++.|. .|+ +|+++ |..+... .+.+.|+... . .+.. +++|+|+.. +|++
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~----~V~~~-D~~~~~~-~~~~~gi~~~-~-~~~~~~~~~d~vv~sp~i~~~ 67 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFG----GVDIF-DDKFTES-HKDEEGNLLL-P-SNDFDPNKSDLEIPSPGIPPS 67 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCC----eEEEE-cCCCCcc-chhhcCCEEe-c-HHHcCcCCCCEEEECCCCCCC
Confidence 58999999999999999999 998 99999 8654322 1233466553 2 2223 468988776 3544
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.27 Score=42.80 Aligned_cols=84 Identities=14% Similarity=0.152 Sum_probs=51.6
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC---cccH
Q 024016 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK---PQVV 84 (274)
Q Consensus 9 ~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~---~~~~ 84 (274)
+.+++-|.| .|.+|..+++.|.+.|+ +|++. .|+.++.+++.+. + .+......+.++.+. .+.+
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~----~Vil~-~R~~~~~~~~~~~-l------~~~~~~~~v~~~~~Dl~d~~sv 80 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGA----EVILP-VRNRAKGEAAVAA-I------RTAVPDAKLSLRALDLSSLASV 80 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-H------HHhCCCCceEEEEecCCCHHHH
Confidence 345666665 58899999999999998 99999 9998877655431 0 000112234444443 4456
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
+.+++++.....+=.++|+.
T Consensus 81 ~~~~~~~~~~~~~iD~li~n 100 (313)
T PRK05854 81 AALGEQLRAEGRPIHLLINN 100 (313)
T ss_pred HHHHHHHHHhCCCccEEEEC
Confidence 66666665433332456654
|
|
| >cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.19 Score=43.31 Aligned_cols=75 Identities=16% Similarity=0.242 Sum_probs=48.0
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------------------HHHHH----HHH--cCcee-----
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRDA----FES--IGVKV----- 61 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-------------------~~~~~----l~~--~g~~~----- 61 (274)
||.+||+|.+|+.++++|...|. .++++. |.+. .|++. +.+ .++++
T Consensus 1 kVlVVGaGGlG~eilknLal~Gv---g~I~Iv-D~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~ 76 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGF---RNIHVI-DMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFG 76 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC---CeEEEE-CCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEec
Confidence 68999999999999999999997 256665 4321 12222 222 22322
Q ss_pred --ccCchhhccCCCEEEEeeCcccHHHHHHH
Q 024016 62 --LSDNNAVVEYSDVVVFSVKPQVVKDVAMQ 90 (274)
Q Consensus 62 --~~~~~~~~~~aDiIil~v~~~~~~~v~~~ 90 (274)
.+...+..++.|+||.|+..-..+..+.+
T Consensus 77 ~i~~~~~~f~~~fdvVi~alDn~~aR~~in~ 107 (291)
T cd01488 77 KIQDKDEEFYRQFNIIICGLDSIEARRWING 107 (291)
T ss_pred ccCchhHHHhcCCCEEEECCCCHHHHHHHHH
Confidence 12234567789999999976555544443
|
UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.19 Score=41.96 Aligned_cols=83 Identities=13% Similarity=0.134 Sum_probs=51.8
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~ 84 (274)
+.++|-|.|. |.+|.++++.|.+.|+ +|++. +|++++.+.+.+.- .. ...++.++.. .++.+
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~~~~-------~~--~~~~~~~~~~D~~~~~~~ 69 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGA----DVVLA-ARTAERLDEVAAEI-------DD--LGRRALAVPTDITDEDQC 69 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHHHHH-------HH--hCCceEEEecCCCCHHHH
Confidence 4567888865 9999999999999999 99999 99987665554310 00 0122233332 34456
Q ss_pred HHHHHHhccccCCCCEEEEec
Q 024016 85 KDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~ 105 (274)
..+++++...+.+=..+|+..
T Consensus 70 ~~~~~~~~~~~g~~d~vi~~a 90 (258)
T PRK07890 70 ANLVALALERFGRVDALVNNA 90 (258)
T ss_pred HHHHHHHHHHcCCccEEEECC
Confidence 666666544433324666654
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.11 Score=52.05 Aligned_cols=66 Identities=9% Similarity=0.014 Sum_probs=48.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH---------------------HHHHHHHcCceecc----
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK---------------------RRDAFESIGVKVLS---- 63 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~---------------------~~~~l~~~g~~~~~---- 63 (274)
+.+||+|||+|.-|.+-|..|.+.|| +|++| ++.+. ..+.+.+.|+++..
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~----~VtVf-E~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~v 379 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGF----PVTVF-EAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVV 379 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC----eEEEE-eeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEe
Confidence 46899999999999999999999999 99999 76531 12334446665321
Q ss_pred ----Cchhhcc-CCCEEEEee
Q 024016 64 ----DNNAVVE-YSDVVVFSV 79 (274)
Q Consensus 64 ----~~~~~~~-~aDiIil~v 79 (274)
+..++.+ ..|-||+++
T Consensus 380 G~dit~~~l~~~~yDAV~LAt 400 (944)
T PRK12779 380 GKTATLEDLKAAGFWKIFVGT 400 (944)
T ss_pred ccEEeHHHhccccCCEEEEeC
Confidence 2334433 689999998
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.24 Score=41.65 Aligned_cols=42 Identities=14% Similarity=0.230 Sum_probs=34.6
Q ss_pred CCCeEEEEcc-c-HHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024016 9 ESFILGFIGA-G-KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (274)
Q Consensus 9 ~~~~IgiIG~-G-~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~ 55 (274)
+.+++-|.|. | .+|.++++.|.+.|+ +|++. +|++++.+...
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~----~V~~~-~~~~~~~~~~~ 59 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGA----RVVIS-DIHERRLGETA 59 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHH
Confidence 3578889997 6 699999999999999 89998 89887665443
|
|
| >PLN02358 glyceraldehyde-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.37 Score=42.43 Aligned_cols=44 Identities=11% Similarity=0.145 Sum_probs=30.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC--CHHHHHHHHH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS--NLKRRDAFES 56 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r--~~~~~~~l~~ 56 (274)
++||||+|+|+||...++.+.+... .++..++|+ +++....|.+
T Consensus 5 ~lrVaI~G~GrIGr~~~r~~~~~~~---velvaI~D~~~~~~~~a~ll~ 50 (338)
T PLN02358 5 KIRIGINGFGRIGRLVARVVLQRDD---VELVAVNDPFITTEYMTYMFK 50 (338)
T ss_pred ceEEEEEeecHHHHHHHHHHhhCCC---cEEEEEeCCCCCHHHHHHhhe
Confidence 4799999999999999999876432 266665464 4455555544
|
|
| >COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.26 Score=42.76 Aligned_cols=44 Identities=7% Similarity=0.099 Sum_probs=33.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeC-CCHHHHHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVH-SNLKRRDAFES 56 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~-r~~~~~~~l~~ 56 (274)
.||||=|.|++|+..++.+.+.+. .-+|...++ .+++....|.+
T Consensus 2 ikV~INGfGrIGR~v~ra~~~~~~--dieVVaInd~t~~~~~A~Llk 46 (335)
T COG0057 2 IKVAINGFGRIGRLVARAALERDG--DIEVVAINDLTDPDYLAHLLK 46 (335)
T ss_pred cEEEEecCcHHHHHHHHHHHhCCC--CeEEEEEecCCCHHHHHHHHh
Confidence 599999999999999999998761 017777745 56666666654
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.094 Score=43.55 Aligned_cols=41 Identities=20% Similarity=0.151 Sum_probs=34.4
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH
Q 024016 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF 54 (274)
Q Consensus 9 ~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l 54 (274)
+.++|.|.| .|.+|.++++.|.+.|+ +|++. +|++++.+.+
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~g~----~V~~~-~r~~~~~~~~ 46 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAADGA----EVIVV-DICGDDAAAT 46 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHH
Confidence 456899997 69999999999999999 99999 9987665443
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.099 Score=43.31 Aligned_cols=44 Identities=18% Similarity=0.215 Sum_probs=36.5
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~ 55 (274)
+|+.+++.|.|+ |.+|..+++.|.+.|+ +|++. +|++++.+.+.
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~----~V~~~-~r~~~~~~~~~ 47 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGA----TVILV-ARHQKKLEKVY 47 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCC----EEEEE-eCChHHHHHHH
Confidence 455578888875 9999999999999999 99999 99987765543
|
|
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.14 Score=47.28 Aligned_cols=66 Identities=15% Similarity=0.031 Sum_probs=46.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH----HHHHHHHcCceec-cCchhhccCCCEEEEee
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK----RRDAFESIGVKVL-SDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~----~~~~l~~~g~~~~-~~~~~~~~~aDiIil~v 79 (274)
+.+||+|+|+|.=|.+.++.|.+.|. +|+++ |.++. ..++|.+.+.... ....+.+.++|+||..-
T Consensus 7 ~~~~v~v~G~G~sG~~~~~~l~~~g~----~v~~~-d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~Sp 77 (468)
T PRK04690 7 EGRRVALWGWGREGRAAYRALRAHLP----AQALT-LFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSP 77 (468)
T ss_pred CCCEEEEEccchhhHHHHHHHHHcCC----EEEEE-cCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECC
Confidence 35689999999999999999999998 99999 84321 2224544332221 22335567899998864
|
|
| >PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.14 Score=44.06 Aligned_cols=72 Identities=19% Similarity=0.312 Sum_probs=52.9
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhC----CCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee-Cc
Q 024016 8 AESFILGFIGA-GKMAESIAKGVAKS----GVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV-KP 81 (274)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~~a~~L~~~----g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v-~~ 81 (274)
...++|.|||- ..+|.+++.-|.+. +. .|+++ .... .+..+.+++|||||.++ +|
T Consensus 155 l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~a----TVtvc-hs~T--------------~~l~~~~~~ADIvIsAvGkp 215 (297)
T PRK14167 155 TEGADVVVVGRSDIVGKPMANLLIQKADGGNA----TVTVC-HSRT--------------DDLAAKTRRADIVVAAAGVP 215 (297)
T ss_pred CCCCEEEEECCCcccHHHHHHHHhcCccCCCC----EEEEe-CCCC--------------CCHHHHHhhCCEEEEccCCc
Confidence 45679999987 56799999988876 44 78888 5331 24567789999999999 56
Q ss_pred ccHHHHHHHhccccCCCCEEEEe
Q 024016 82 QVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 82 ~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
..+.. ..+++|.+||++
T Consensus 216 ~~i~~------~~ik~gaiVIDv 232 (297)
T PRK14167 216 ELIDG------SMLSEGATVIDV 232 (297)
T ss_pred CccCH------HHcCCCCEEEEc
Confidence 64322 236799999986
|
|
| >COG5322 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.032 Score=46.76 Aligned_cols=89 Identities=20% Similarity=0.188 Sum_probs=54.8
Q ss_pred CCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH-----HHHHHH-cCce-eccCchhhccCCCEEE
Q 024016 5 PIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-----RDAFES-IGVK-VLSDNNAVVEYSDVVV 76 (274)
Q Consensus 5 ~~~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~-----~~~l~~-~g~~-~~~~~~~~~~~aDiIi 76 (274)
+...++-+++|+|+ |.+|+.+++-|..++- .+.+. .|+.++ ...+.+ .|.. +.+...+.....++|+
T Consensus 162 GidlsqatvaivGa~G~Ia~~Iar~la~~~~----~~~ll-~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~ 236 (351)
T COG5322 162 GIDLSQATVAIVGATGDIASAIARWLAPKVG----VKELL-LRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVW 236 (351)
T ss_pred CcCHHHCeEEEecCCchHHHHHHHHhccccC----EEEEe-cccHHhhhhhhhhhcccccCCCeeeeccccccccceEEE
Confidence 34445678999997 9999999998876654 55555 665544 333333 3332 2223344556667788
Q ss_pred EeeCcccHHHHHHHhc-cccCCCCEEEE
Q 024016 77 FSVKPQVVKDVAMQIR-PLLSRKKLLVS 103 (274)
Q Consensus 77 l~v~~~~~~~v~~~i~-~~l~~~~~vis 103 (274)
++..|.-. .|. .+++|+.+|++
T Consensus 237 vAs~~~g~-----~I~pq~lkpg~~ivD 259 (351)
T COG5322 237 VASMPKGV-----EIFPQHLKPGCLIVD 259 (351)
T ss_pred EeecCCCc-----eechhhccCCeEEEc
Confidence 88744322 122 24789988886
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.22 Score=43.81 Aligned_cols=84 Identities=14% Similarity=0.179 Sum_probs=54.6
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---Cccc
Q 024016 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQV 83 (274)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~ 83 (274)
++.++|.|.|+ |.+|..+++.|.+.|+ +|++. +|++++.+.+.+. + .+ ..+++.++.+ .++.
T Consensus 6 l~~k~vlITGas~gIG~~la~~la~~G~----~Vvl~-~R~~~~l~~~~~~-l------~~--~g~~~~~v~~Dv~d~~~ 71 (334)
T PRK07109 6 IGRQVVVITGASAGVGRATARAFARRGA----KVVLL-ARGEEGLEALAAE-I------RA--AGGEALAVVADVADAEA 71 (334)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-H------HH--cCCcEEEEEecCCCHHH
Confidence 44567888875 9999999999999999 99999 9998876655431 0 00 1233444433 3455
Q ss_pred HHHHHHHhccccCCCCEEEEec
Q 024016 84 VKDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~~ 105 (274)
++.+++++...+.+=.++|+..
T Consensus 72 v~~~~~~~~~~~g~iD~lInnA 93 (334)
T PRK07109 72 VQAAADRAEEELGPIDTWVNNA 93 (334)
T ss_pred HHHHHHHHHHHCCCCCEEEECC
Confidence 6677766655444435677654
|
|
| >TIGR02130 dapB_plant dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.25 Score=42.06 Aligned_cols=99 Identities=15% Similarity=0.186 Sum_probs=63.4
Q ss_pred eEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEE-eCCCHH--HHHHHHHcCcee------ccCchhhccC-CC-EEEEee
Q 024016 12 ILGFIGA-GKMAESIAKGVAKSGVLPPDRICTA-VHSNLK--RRDAFESIGVKV------LSDNNAVVEY-SD-VVVFSV 79 (274)
Q Consensus 12 ~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~-~~r~~~--~~~~l~~~g~~~------~~~~~~~~~~-aD-iIil~v 79 (274)
||.|.|+ |+||+..++.+.+.++ ++... .++... ....+...++.+ .++..++.+. +| ++|=-+
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~~~~----~Lv~~~~~~~~~~~~~~~~~g~~v~v~~~~~~~~~l~~~~~~~~d~VvIDFT 77 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADAAGL----EIVPTSFGGEEEAENEAEVAGKEILLHGPSEREARIGEVFAKYPELICIDYT 77 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhcCCC----EEEeeEccccccccchhhhcccceeeeccccccccHHHHHhhcCCEEEEECC
Confidence 7889987 9999999999988777 66553 244321 222222235555 5566666665 89 777777
Q ss_pred CcccHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhh
Q 024016 80 KPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWT 117 (274)
Q Consensus 80 ~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~ 117 (274)
.|+.+.+.+..... .+..+|.-+.|.+.+.+++..
T Consensus 78 ~P~~~~~n~~~~~~---~gv~~ViGTTG~~~~~~~~l~ 112 (275)
T TIGR02130 78 HPSAVNDNAAFYGK---HGIPFVMGTTGGDREALAKLV 112 (275)
T ss_pred ChHHHHHHHHHHHH---CCCCEEEcCCCCCHHHHHHHH
Confidence 78877776655432 334455555777777776553
|
This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome. |
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.3 Score=42.18 Aligned_cols=40 Identities=23% Similarity=0.240 Sum_probs=32.9
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF 54 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l 54 (274)
.++|-|.|+ |.+|..+++.|.+.|+ +|++. .|++++.+..
T Consensus 16 ~k~vlItGas~gIG~~~a~~l~~~G~----~vi~~-~r~~~~~~~~ 56 (306)
T PRK06197 16 GRVAVVTGANTGLGYETAAALAAKGA----HVVLA-VRNLDKGKAA 56 (306)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHH
Confidence 356777764 9999999999999998 99888 8988776543
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.3 Score=41.63 Aligned_cols=84 Identities=17% Similarity=0.099 Sum_probs=52.1
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccH
Q 024016 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~ 84 (274)
+.++|-|.| +|.+|..+++.|.+.|+ +|++. +|+.+..+...+. ... ...++.++.. .++.+
T Consensus 5 ~~k~vlVtGasggIG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~~~-------~~~--~~~~~~~~~~D~~d~~~~ 70 (287)
T PRK06194 5 AGKVAVITGAASGFGLAFARIGAALGM----KLVLA-DVQQDALDRAVAE-------LRA--QGAEVLGVRTDVSDAAQV 70 (287)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCC----EEEEE-eCChHHHHHHHHH-------HHh--cCCeEEEEECCCCCHHHH
Confidence 446788886 58999999999999999 99999 9987765544321 000 0223333333 23456
Q ss_pred HHHHHHhccccCCCCEEEEecC
Q 024016 85 KDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~~ 106 (274)
.++++++.....+=.+||+..+
T Consensus 71 ~~~~~~~~~~~g~id~vi~~Ag 92 (287)
T PRK06194 71 EALADAALERFGAVHLLFNNAG 92 (287)
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 6666665443333346776543
|
|
| >COG1832 Predicted CoA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.42 Score=35.98 Aligned_cols=97 Identities=19% Similarity=0.256 Sum_probs=71.5
Q ss_pred CCeEEEEcc----cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHH
Q 024016 10 SFILGFIGA----GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (274)
Q Consensus 10 ~~~IgiIG~----G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~ 85 (274)
.++|+++|+ .+-+...++.|.++|| +|+=. |....- +.+ +|-.++.|..+.-+.-|+|-+.-+++.+.
T Consensus 16 ~K~IAvVG~S~~P~r~sy~V~kyL~~~GY----~ViPV-NP~~~~-~ei--LG~k~y~sL~dIpe~IDiVdvFR~~e~~~ 87 (140)
T COG1832 16 AKTIAVVGASDKPDRPSYRVAKYLQQKGY----RVIPV-NPKLAG-EEI--LGEKVYPSLADIPEPIDIVDVFRRSEAAP 87 (140)
T ss_pred CceEEEEecCCCCCccHHHHHHHHHHCCC----EEEee-Ccccch-HHh--cCchhhhcHHhCCCCCcEEEEecChhhhH
Confidence 478999998 5678889999999999 88877 653221 121 57788888888888999999999999999
Q ss_pred HHHHHhccccCCCCEEEEecCCCCHHHHHHhh
Q 024016 86 DVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWT 117 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~ 117 (274)
++.++.... +.-++=..-|+..+...+.+
T Consensus 88 ~i~~eal~~---~~kv~W~QlGi~n~ea~~~~ 116 (140)
T COG1832 88 EVAREALEK---GAKVVWLQLGIRNEEAAEKA 116 (140)
T ss_pred HHHHHHHhh---CCCeEEEecCcCCHHHHHHH
Confidence 999886543 23344445566655544433
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.2 Score=41.65 Aligned_cols=42 Identities=19% Similarity=0.340 Sum_probs=35.0
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~ 55 (274)
+.+++-|.|. |.+|..+++.|.+.|+ +|++. +|+++..+.+.
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~----~vi~~-~r~~~~~~~~~ 47 (250)
T PRK07774 5 DDKVAIVTGAAGGIGQAYAEALAREGA----SVVVA-DINAEGAERVA 47 (250)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHH
Confidence 4468888886 9999999999999998 99999 99876655443
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.46 Score=39.47 Aligned_cols=83 Identities=16% Similarity=0.176 Sum_probs=53.0
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~ 84 (274)
+.+++.|.|+ |.+|..+++.|.+.|+ +|++. .|+.+..+...+. +. .+..+.++.. .++.+
T Consensus 4 ~~k~~lItG~sg~iG~~la~~l~~~G~----~v~~~-~r~~~~~~~~~~~-~~---------~~~~~~~~~~D~~~~~~~ 68 (252)
T PRK06138 4 AGRVAIVTGAGSGIGRATAKLFAREGA----RVVVA-DRDAEAAERVAAA-IA---------AGGRAFARQGDVGSAEAV 68 (252)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCC----eEEEe-cCCHHHHHHHHHH-Hh---------cCCeEEEEEcCCCCHHHH
Confidence 3468888866 9999999999999998 99999 8987766544321 00 0122222222 34567
Q ss_pred HHHHHHhccccCCCCEEEEecC
Q 024016 85 KDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~~ 106 (274)
.++++++...+.+=..+|++.+
T Consensus 69 ~~~~~~i~~~~~~id~vi~~ag 90 (252)
T PRK06138 69 EALVDFVAARWGRLDVLVNNAG 90 (252)
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 7777766544433346776644
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.16 Score=47.24 Aligned_cols=34 Identities=12% Similarity=0.241 Sum_probs=30.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
..++|.|||.|..|...|..|.+.|+ +|+++ ++.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~----~V~v~-e~~ 175 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGH----TVTVF-ERE 175 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC----eEEEE-ecC
Confidence 34799999999999999999999998 89999 754
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.32 Score=40.87 Aligned_cols=81 Identities=17% Similarity=0.201 Sum_probs=51.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccHHH
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVKD 86 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~~~ 86 (274)
|++-|.|. |.+|.++++.|.+.|+ +|++. +|++++.+++.+. +. + ..++.++.. .++.+++
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-l~------~---~~~~~~~~~Dv~d~~~~~~ 65 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGA----RVVIS-SRNEENLEKALKE-LK------E---YGEVYAVKADLSDKDDLKN 65 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHHHH-HH------h---cCCceEEEcCCCCHHHHHH
Confidence 47888875 8899999999999999 99999 9998776554431 00 0 001222222 3455777
Q ss_pred HHHHhccccCCCCEEEEecC
Q 024016 87 VAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~~ 106 (274)
+++++...+.+=.++|+..+
T Consensus 66 ~~~~~~~~~g~id~li~naG 85 (259)
T PRK08340 66 LVKEAWELLGGIDALVWNAG 85 (259)
T ss_pred HHHHHHHhcCCCCEEEECCC
Confidence 77666544433346676543
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.1 Score=43.11 Aligned_cols=41 Identities=12% Similarity=0.179 Sum_probs=35.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~ 55 (274)
.++|.|+|. |.+|..+++.|++.|+ +|.+. +|++++.+.+.
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~----~V~~~-~r~~~~~~~~~ 47 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGY----KVAIT-ARDQKELEEAA 47 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC----EEEEe-eCCHHHHHHHH
Confidence 467889975 9999999999999998 99999 99987766554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 274 | ||||
| 2izz_A | 322 | Crystal Structure Of Human Pyrroline-5-Carboxylate | 2e-51 | ||
| 2gr9_A | 277 | Crystal Structure Of P5cr Complexed With Nadh Lengt | 7e-51 | ||
| 2ger_A | 321 | Crystal Structure And Oxidative Mechanism Of Human | 7e-51 | ||
| 2rcy_A | 262 | Crystal Structure Of Plasmodium Falciparum Pyrrolin | 7e-35 | ||
| 3tri_A | 280 | Structure Of A Pyrroline-5-Carboxylate Reductase (P | 1e-33 | ||
| 3gt0_A | 247 | Crystal Structure Of Pyrroline 5-Carboxylate Reduct | 7e-29 | ||
| 2amf_A | 259 | Crystal Structure Of 1-Pyrroline-5-Carboxylate Redu | 2e-28 | ||
| 2ahr_A | 259 | Crystal Structures Of 1-Pyrroline-5-Carboxylate Red | 5e-27 | ||
| 1yqg_A | 263 | Crystal Structure Of A Pyrroline-5-Carboxylate Redu | 2e-19 |
| >pdb|2IZZ|A Chain A, Crystal Structure Of Human Pyrroline-5-Carboxylate Reductase Length = 322 | Back alignment and structure |
|
| >pdb|2GR9|A Chain A, Crystal Structure Of P5cr Complexed With Nadh Length = 277 | Back alignment and structure |
|
| >pdb|2GER|A Chain A, Crystal Structure And Oxidative Mechanism Of Human Pyrroline-5- Carboxylate Reductase Length = 321 | Back alignment and structure |
|
| >pdb|2RCY|A Chain A, Crystal Structure Of Plasmodium Falciparum Pyrroline Carboxylate Reductase (Mal13p1.284) With Nadp Bound Length = 262 | Back alignment and structure |
|
| >pdb|3TRI|A Chain A, Structure Of A Pyrroline-5-Carboxylate Reductase (Proc) From Coxiella Burnetii Length = 280 | Back alignment and structure |
|
| >pdb|3GT0|A Chain A, Crystal Structure Of Pyrroline 5-Carboxylate Reductase From Bacillus Cereus. Northeast Structural Genomics Consortium Target Bcr38b Length = 247 | Back alignment and structure |
|
| >pdb|2AMF|A Chain A, Crystal Structure Of 1-Pyrroline-5-Carboxylate Reductase From Human Pathogen Streptococcus Pyogenes Length = 259 | Back alignment and structure |
|
| >pdb|2AHR|A Chain A, Crystal Structures Of 1-Pyrroline-5-Carboxylate Reductase From Human Pathogen Streptococcus Pyogenes Length = 259 | Back alignment and structure |
|
| >pdb|1YQG|A Chain A, Crystal Structure Of A Pyrroline-5-Carboxylate Reductase From Neisseria Meningitides Mc58 Length = 263 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* Length = 322 | Back alignment and structure |
|---|
Score = 368 bits (947), Expect = e-129
Identities = 123/279 (44%), Positives = 173/279 (62%), Gaps = 5/279 (1%)
Query: 1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFESIGV 59
+ + +S +GFIGAG++A ++AKG +GVL +I ++ +L A +GV
Sbjct: 13 LGTENLYFQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGV 72
Query: 60 KVLSDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGH 119
K+ N V++SDV+ +VKP ++ + +I + + ++VS AAGV + +++
Sbjct: 73 KLTPHNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSA 132
Query: 120 ----SRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAI 175
R IR M NTP V E ATV + G A EDG L+ +L SVG +E L DA+
Sbjct: 133 FRPAPRVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAV 192
Query: 176 TGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDD 235
TGLSGSGPAY F A++ALADGGV GLPR LA+ L +Q +LGAA M+ S +HPGQLKD+
Sbjct: 193 TGLSGSGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDN 252
Query: 236 VASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 274
V+SPGG TI +H LE GFR +L+NAV A+ R+REL
Sbjct: 253 VSSPGGATIHALHVLESGGFRSLLINAVEASCIRTRELQ 291
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} Length = 262 | Back alignment and structure |
|---|
Score = 358 bits (921), Expect = e-126
Identities = 95/263 (36%), Positives = 148/263 (56%), Gaps = 9/263 (3%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYS 72
LGF+G G+M ++A G+A + ++ + + S ++ + +S N + +
Sbjct: 7 LGFMGLGQMGSALAHGIANANIIKKENLFYYGPSK-------KNTTLNYMSSNEELARHC 59
Query: 73 DVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPS 131
D++V +VKP + V I+P LS KLL+S+ G+ + L+E G ++ + VMPNTP
Sbjct: 60 DIIVCAVKPDIAGSVLNNIKPYLS-SKLLISICGGLNIGKLEEMVGSENKIVWVMPNTPC 118
Query: 132 AVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIE 191
VGE + + D + + +F S G I EK D T +SG GPAY++L IE
Sbjct: 119 LVGEGSFIYCSNKNVNSTDKKYVNDIFNSCGIIHEIKEKDMDIATAISGCGPAYVYLFIE 178
Query: 192 ALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELE 251
+L D GV GL REL+ L QT+ G+ MV KS + QLKD++ SPGG T G++ LE
Sbjct: 179 SLIDAGVKNGLSRELSKNLVLQTIKGSVEMVKKSDQPVQQLKDNIVSPGGITAVGLYSLE 238
Query: 252 KSGFRGILMNAVVAAAKRSRELS 274
K+ F+ +MNAV AA ++S+ +
Sbjct: 239 KNSFKYTVMNAVEAACEKSKAMG 261
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} Length = 280 | Back alignment and structure |
|---|
Score = 354 bits (910), Expect = e-124
Identities = 106/265 (40%), Positives = 145/265 (54%), Gaps = 4/265 (1%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYS 72
+ FIG G MA +I G+ +G P+RIC S K E GV DN +
Sbjct: 6 ITFIGGGNMARNIVVGLIANGY-DPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNA 64
Query: 73 DVVVFSVKPQVVKDVAMQIRPLLS-RKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTP 130
DVVV +VKP +K V +++ +LS K L++S+A GV +++W G SR +R MPNTP
Sbjct: 65 DVVVLAVKPHQIKMVCEELKDILSETKILVISLAVGVTTPLIEKWLGKASRIVRAMPNTP 124
Query: 131 SAVGEAATVMSLGGTATEEDGELIGKLFGSVGK-IWRADEKLFDAITGLSGSGPAYIFLA 189
S+V AT + T ++ L + +VG IW + E + I LSGSGPAYIFL
Sbjct: 125 SSVRAGATGLFANETVDKDQKNLAESIMRAVGLVIWVSSEDQIEKIAALSGSGPAYIFLI 184
Query: 190 IEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHE 249
+EAL + GL +E A L QTVLGAA M ++ + QL+ V SPGGTT I
Sbjct: 185 MEALQEAAEQLGLTKETAELLTEQTVLGAARMALETEQSVVQLRQFVTSPGGTTEQAIKV 244
Query: 250 LEKSGFRGILMNAVVAAAKRSRELS 274
LE R + + A+ AA R++ELS
Sbjct: 245 LESGNLRELFIKALTAAVNRAKELS 269
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A Length = 259 | Back alignment and structure |
|---|
Score = 351 bits (902), Expect = e-123
Identities = 84/262 (32%), Positives = 144/262 (54%), Gaps = 9/262 (3%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYS 72
+G IG GKMA +I KG+ ++ P + + S + ++ E + + + +++
Sbjct: 6 IGIIGVGKMASAIIKGLKQT----PHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQV 61
Query: 73 DVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHS-RFIRVMPNTPS 131
D+V+ +KPQ+ + V + K+ ++S+AAG+ L+ L + G +R+MPN +
Sbjct: 62 DLVILGIKPQLFETVLKPLHF----KQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNA 117
Query: 132 AVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIE 191
+ +++T ++ ++E + L S G + EK FD T L+GS PAYI+L IE
Sbjct: 118 QILQSSTALTGNALVSQELQARVRDLTDSFGSTFDISEKDFDTFTALAGSSPAYIYLFIE 177
Query: 192 ALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELE 251
ALA GV G+P+ AL + +QTVL +AS + S + P D + SPGGTTIAG+ ELE
Sbjct: 178 ALAKAGVKNGIPKAKALEIVTQTVLASASNLKTSSQSPHDFIDAICSPGGTTIAGLMELE 237
Query: 252 KSGFRGILMNAVVAAAKRSREL 273
+ G + +A+ +++ L
Sbjct: 238 RLGLTATVSSAIDKTIDKAKSL 259
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} Length = 247 | Back alignment and structure |
|---|
Score = 341 bits (876), Expect = e-119
Identities = 88/243 (36%), Positives = 144/243 (59%), Gaps = 1/243 (0%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYS 72
+GFIG G M ++ G+ ++ ++I + + ++A E G+ +DNN V + +
Sbjct: 5 IGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNA 64
Query: 73 DVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHS-RFIRVMPNTPS 131
D+++ S+KP + + +I+ ++ ++V++AAG ++ + + +RVMPNTP+
Sbjct: 65 DILILSIKPDLYASIINEIKEIIKNDAIIVTIAAGKSIESTENAFNKKVKVVRVMPNTPA 124
Query: 132 AVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIE 191
VGE + + TE+D E + +F S G+ EKL D +T +SGS PAY+++ IE
Sbjct: 125 LVGEGMSALCPNEMVTEKDLEDVLNIFNSFGQTEIVSEKLMDVVTSVSGSSPAYVYMIIE 184
Query: 192 ALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELE 251
A+AD V G+PR A A+Q VLG+A MV ++G HPG+LKD V SPGGTTI + LE
Sbjct: 185 AMADAAVLDGMPRNQAYKFAAQAVLGSAKMVLETGIHPGELKDMVCSPGGTTIEAVATLE 244
Query: 252 KSG 254
+ G
Sbjct: 245 EKG 247
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* Length = 263 | Back alignment and structure |
|---|
Score = 329 bits (846), Expect = e-114
Identities = 83/264 (31%), Positives = 132/264 (50%), Gaps = 9/264 (3%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYS 72
+ F+G G MA ++A G+ K G RI A KR + +GV+ S +
Sbjct: 3 VYFLGGGNMAAAVAGGLVKQG---GYRIYIANRGAEKRERLEKELGVET-SATLPELHSD 58
Query: 73 DVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPS 131
DV++ +VKPQ ++ IR L++SVAAG+ + L + G R +RVMPNTP
Sbjct: 59 DVLILAVKPQDMEAACKNIRT---NGALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPG 115
Query: 132 AVGEAATVMSLGGTATEEDGELIGKLFGSVGK-IWRADEKLFDAITGLSGSGPAYIFLAI 190
+G + M +E D + ++ SVG +W DE+ ITG+SGSGPAY+F +
Sbjct: 116 KIGLGVSGMYAEAEVSETDRRIADRIMKSVGLTVWLDDEEKMHGITGISGSGPAYVFYLL 175
Query: 191 EALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHEL 250
+AL + + G A L+ T GA ++ ++G+ +L+ +V S GGTT +
Sbjct: 176 DALQNAAIRQGFDMAEARALSLATFKGAVALAEQTGEDFEKLQKNVTSKGGTTHEAVEAF 235
Query: 251 EKSGFRGILMNAVVAAAKRSRELS 274
+ + V A +RS+E+
Sbjct: 236 RRHRVAEAISEGVCACVRRSQEME 259
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} Length = 286 | Back alignment and structure |
|---|
Score = 75.1 bits (184), Expect = 6e-16
Identities = 38/239 (15%), Positives = 82/239 (34%), Gaps = 28/239 (11%)
Query: 13 LGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEY 71
+ +GA GKM I + + S A+ + RD + +G+ + +D + ++
Sbjct: 14 VAILGAGGKMGARITRKIHDSAH-----HLAAIEIAPEGRDRLQGMGIPL-TDGDGWIDE 67
Query: 72 SDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNTPS 131
+DVVV ++ +++ VA I P + +++ + A + + P P
Sbjct: 68 ADVVVLALPDNIIEKVAEDIVPRVRPGTIVLILDAAAPYAGVMPERADITYFIGHPCHPP 127
Query: 132 AVGE---------------AATVMSLGGTATEEDGELIGKL----FGSVGKIWRAD-EKL 171
+ ++ EE + + + V + R E+L
Sbjct: 128 LFNDETDPAARTDYHGGIAKQAIVCALMQGPEEHYAIGADICETMWSPVTRTHRVTTEQL 187
Query: 172 FDAITGLSGS-GPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHP 229
GLS ++ + A+ + G+ R+ AL + +M
Sbjct: 188 AILEPGLSEMVAMPFVETMVHAVDECADRYGIDRQAALDFMIGHLNVEIAMWFGYSPKV 246
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} Length = 266 | Back alignment and structure |
|---|
Score = 63.6 bits (154), Expect = 5e-12
Identities = 29/215 (13%), Positives = 71/215 (33%), Gaps = 15/215 (6%)
Query: 14 GFIGAGKMAESIAKGVAKSGVLPPDRICTAVH--SNLKRRDAFESIGVKVLSDNNAVVEY 71
IGAG +A ++AK + + G V+ + R+ + + + +D V Y
Sbjct: 14 VLIGAGNLATNLAKALYRKGF-----RIVQVYSRTEESARELAQKVEAEYTTDLAEVNPY 68
Query: 72 SDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIR-VMPNTP 130
+ + + S+K ++ I + L+V A + + + H + +
Sbjct: 69 AKLYIVSLKDSAFAELLQGIVEGKREEALMVHTAGSIPMNVWEGHVPHYGVFYPMQTFSK 128
Query: 131 SAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWR----ADEKLFDAITGLSGSGPAYI 186
+ + ++ ED + + ++ K + + ++
Sbjct: 129 QREVDFKEIPFFIEASSTEDAAFLKAIASTLSNRVYDADSEQRKSLHLAAVFTCNFTNHM 188
Query: 187 FLAIEALADGGVAAGLPRELALGLASQTVLGAASM 221
+ L LP ++ L L +T +
Sbjct: 189 YALAAELLK---KYNLPFDVMLPLIDETARKVHEL 220
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 5e-05
Identities = 27/184 (14%), Positives = 56/184 (30%), Gaps = 44/184 (23%)
Query: 51 RDAF-ESIGVKVLSDNNAVV----EYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVA 105
DAF ++ K + D + E +++ V LLS+++ +V
Sbjct: 26 EDAFVDNFDCKDVQDMPKSILSKEEIDHIIM---SKDAVSGTLRLFWTLLSKQEEMVQKF 82
Query: 106 AGVKLKDLQEWTGHSRFIRVMPNTPSAVGEA--ATVMSLGGTATEEDGELIGKLFGSVGK 163
L+ ++ I+ PS + L D ++ K
Sbjct: 83 VEEVLRINYKFLMSP--IKTEQRQPSMMTRMYIEQRDRLYN-----DNQVFAKYN----- 130
Query: 164 IWRADEKLFDAIT---------------GLSGSGPAYIFLAIEALADGGVAAGLPRE--- 205
+ R + + + G+ GSG + +A++ V + +
Sbjct: 131 VSR--LQPYLKLRQALLELRPAKNVLIDGVLGSGKTW--VALDVCLSYKVQCKMDFKIFW 186
Query: 206 LALG 209
L L
Sbjct: 187 LNLK 190
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 3e-04
Identities = 38/231 (16%), Positives = 76/231 (32%), Gaps = 76/231 (32%)
Query: 7 PAESFIL-GFIGAGKMAESIAKGVAKSGVL---PPDRI-------CTAVHSNLKRRDAFE 55
PA++ ++ G +G+GK +A V S + +I C + + L+ +
Sbjct: 149 PAKNVLIDGVLGSGK--TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM---LQ 203
Query: 56 SIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKK----LLVSVAAGVKLK 111
+ ++ + + ++S + + + ++R LL K LLV L
Sbjct: 204 KLLYQIDPNWTSRSDHSSNI-----KLRIHSIQAELRRLLKSKPYENCLLV-------LL 251
Query: 112 DLQEW--------------TGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKL 157
++Q T +RF +V +A ++ T T ++ + L
Sbjct: 252 NVQNAKAWNAFNLSCKILLT--TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK---SL 306
Query: 158 FGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELAL 208
D + D L E L PR L++
Sbjct: 307 LLKY-----LDCRPQD--------------LPREVL------TTNPRRLSI 332
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 Length = 276 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 6e-05
Identities = 23/153 (15%), Positives = 49/153 (32%), Gaps = 8/153 (5%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYS 72
L F+G G + + + + S + R+ E G K + E +
Sbjct: 5 LNFVGTGTLTRFFLECLKDRYEI----GYILSRSIDRARNLAEVYGGKAATLEKH-PELN 59
Query: 73 DVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNTPSA 132
VV V + +K VA + +LV + + + ++ S ++
Sbjct: 60 GVVFVIVPDRYIKTVANHLNL---GDAVLVHCSGFLSSEIFKKSGRASIHPNFSFSSLEK 116
Query: 133 VGEAATVMSLGGTATEEDGELIGKLFGSVGKIW 165
E + G E ++ K+ + +
Sbjct: 117 ALEMKDQIVFGLEGDERGLPIVKKIAEEISGKY 149
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 274 | |||
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 100.0 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 100.0 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 100.0 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 100.0 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 100.0 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 100.0 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 100.0 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.97 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.97 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 99.97 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.97 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.96 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 99.96 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.96 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 99.95 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 99.94 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 99.94 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 99.94 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 99.94 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 99.93 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 99.93 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 99.93 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 99.93 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 99.93 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 99.93 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 99.93 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 99.93 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 99.93 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 99.92 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 99.92 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 99.92 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 99.92 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 99.92 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 99.91 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 99.9 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 99.9 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 99.89 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 99.89 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.89 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.89 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 99.88 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 99.88 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 99.88 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 99.87 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.87 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 99.87 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 99.86 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.86 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 99.86 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.86 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 99.85 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 99.84 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 99.84 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 99.84 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 99.83 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 99.83 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 99.83 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 99.83 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 99.83 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 99.83 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 99.82 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 99.82 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 99.68 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 99.79 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 99.79 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 99.78 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 99.78 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 99.78 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 99.76 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 99.76 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 99.75 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 99.75 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 99.74 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 99.74 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 99.73 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 99.71 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 99.69 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 99.68 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 99.67 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 99.66 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 99.66 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 99.65 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 99.64 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 99.64 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 99.62 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 99.62 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 99.51 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 99.46 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 99.45 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 99.4 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 99.39 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 99.34 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 99.32 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 99.31 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 99.31 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 99.3 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 99.26 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 99.26 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 99.25 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 99.24 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 99.24 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 99.23 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 99.22 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 99.22 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 99.21 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 99.2 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 99.2 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 99.19 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 99.19 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 99.18 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 99.17 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 99.17 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 99.15 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 99.15 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 99.14 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 99.13 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 99.12 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 99.11 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 99.1 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 99.1 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 99.1 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 99.09 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 99.08 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 99.07 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 99.06 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 99.06 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 99.06 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 99.06 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 99.03 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 99.03 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 99.03 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 99.02 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 99.02 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 99.0 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 99.0 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 98.99 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 98.99 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 98.99 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 98.98 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 98.98 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 98.97 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 98.95 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 98.94 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 98.94 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 98.93 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 98.92 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.92 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.91 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 98.9 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.89 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 98.89 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 98.87 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 98.87 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 98.87 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 98.86 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 98.84 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 98.83 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 98.82 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 98.81 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 98.79 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 98.79 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 98.79 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 98.78 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 98.78 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.78 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 98.76 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.75 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 98.75 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 98.74 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 98.73 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 98.73 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 98.72 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.71 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 98.71 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.71 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 98.7 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 98.69 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 98.68 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 98.68 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 98.67 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 98.66 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 98.66 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 98.65 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 98.64 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 98.64 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 98.63 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 98.63 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 98.63 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 98.62 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 98.62 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.61 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 98.61 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 98.6 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 98.59 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 98.58 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 98.58 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 98.57 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 98.57 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 98.57 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 98.56 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 98.56 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 98.55 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 98.54 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 98.53 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 98.53 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 98.53 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 98.52 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 98.51 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 98.51 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 98.5 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 98.5 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 98.5 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 98.49 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 98.48 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 98.48 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 98.48 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 98.48 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 98.47 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 98.47 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 98.47 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 98.46 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 98.46 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 98.46 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 98.46 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 98.44 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 98.44 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 98.44 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.43 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 98.43 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 98.4 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 98.38 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 98.38 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 98.38 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 98.37 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 98.36 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 98.36 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 98.36 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 98.35 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 98.34 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 98.34 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 98.32 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 98.32 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 98.31 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 98.31 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 98.3 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 98.3 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 98.29 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 98.27 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 98.26 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 98.26 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 98.25 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 98.25 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 98.24 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 98.23 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 98.23 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 98.22 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 98.19 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 98.19 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.18 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 98.18 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 98.15 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 98.12 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 98.11 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 98.1 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 98.1 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 98.1 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 98.09 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 98.09 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 98.03 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 98.02 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 98.01 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 98.01 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 98.0 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 98.0 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 97.98 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 97.97 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 97.97 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.93 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 97.92 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 97.92 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 97.92 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 97.9 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 97.9 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 97.9 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 97.89 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 97.89 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 97.87 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 97.87 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 97.87 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.86 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 97.85 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 97.84 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 97.83 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 97.83 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 97.82 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 97.81 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 97.81 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 97.78 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.77 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 97.76 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 97.73 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 97.72 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 97.71 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 97.7 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 97.69 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 97.69 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 97.68 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 97.66 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 97.65 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 97.65 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 97.65 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 97.64 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 97.64 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 97.61 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 97.6 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 97.59 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 97.58 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 97.57 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 97.57 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 97.56 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 97.56 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 97.55 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 97.55 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 97.54 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 97.51 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 97.5 | |
| 2dvm_A | 439 | Malic enzyme, 439AA long hypothetical malate oxido | 97.49 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 97.48 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 97.47 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 97.46 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 97.45 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 97.43 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 97.4 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 97.4 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 97.38 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 97.35 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 97.33 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 97.32 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 97.31 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 97.3 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 97.29 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 97.28 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 97.27 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 97.27 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 97.26 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 97.26 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 97.23 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 97.23 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 97.2 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 97.2 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 97.2 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 97.18 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 97.14 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 97.14 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 97.11 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 97.09 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 97.08 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 97.05 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 97.01 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 96.99 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 96.99 | |
| 1gad_O | 330 | D-glyceraldehyde-3-phosphate dehydrogenase; oxidor | 96.94 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 96.9 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 96.88 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 96.88 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 96.87 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 96.86 | |
| 2x5j_O | 339 | E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid | 96.85 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 96.84 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 96.83 | |
| 3b1j_A | 339 | Glyceraldehyde 3-phosphate dehydrogenase (NADP+); | 96.83 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 96.81 | |
| 3cmc_O | 334 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m | 96.79 | |
| 2csu_A | 457 | 457AA long hypothetical protein; structural genomi | 96.78 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 96.77 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 96.75 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 96.72 | |
| 2d2i_A | 380 | Glyceraldehyde 3-phosphate dehydrogenase; rossmann | 96.71 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 96.66 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 96.64 | |
| 2yv3_A | 331 | Aspartate-semialdehyde dehydrogenase; aspartate pa | 96.64 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 96.63 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 96.63 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 96.62 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 96.62 | |
| 1hdg_O | 332 | Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o | 96.58 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 96.55 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 96.54 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 96.5 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 96.48 | |
| 1rm4_O | 337 | Glyceraldehyde 3-phosphate dehydrogenase A; rossma | 96.47 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 96.45 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 96.42 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 96.42 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 96.42 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 96.39 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 96.37 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 96.32 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 96.31 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 96.31 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 96.3 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 96.28 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 96.27 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 96.26 | |
| 1p3d_A | 475 | UDP-N-acetylmuramate--alanine ligase; alpha/beta p | 96.24 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 96.18 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 96.18 | |
| 3nkl_A | 141 | UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo | 96.13 | |
| 3h2z_A | 382 | Mannitol-1-phosphate 5-dehydrogenase; PSI- protein | 96.11 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 96.08 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 96.08 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 96.02 | |
| 2g82_O | 331 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G | 96.02 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 96.0 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 95.99 | |
| 2f00_A | 491 | UDP-N-acetylmuramate--L-alanine ligase; amide bond | 95.98 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 95.98 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 95.97 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 95.96 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 95.92 | |
| 1vm6_A | 228 | DHPR, dihydrodipicolinate reductase; TM1520, struc | 95.89 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 95.89 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 95.89 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 95.89 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 95.81 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 95.79 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 95.79 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 95.79 | |
| 1tt5_B | 434 | Ubiquitin-activating enzyme E1C isoform 1; cell cy | 95.76 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 95.75 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 95.75 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 95.72 | |
| 3uw3_A | 377 | Aspartate-semialdehyde dehydrogenase; structural g | 95.72 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 95.71 | |
| 3a06_A | 376 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; M | 95.71 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 95.7 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 95.7 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 95.69 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 95.68 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 95.67 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 95.66 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 95.65 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 95.63 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 95.62 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 95.61 | |
| 3h9e_O | 346 | Glyceraldehyde-3-phosphate dehydrogenase, testis-; | 95.6 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 95.6 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 95.59 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 95.59 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 95.58 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 95.58 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 95.57 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 95.56 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 95.56 | |
| 1tt5_A | 531 | APPBP1, amyloid protein-binding protein 1; cell cy | 95.55 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 95.55 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 95.54 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 95.53 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 95.52 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 95.51 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 95.51 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 95.5 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 95.5 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 95.47 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 95.45 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 95.44 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 95.43 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 95.43 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 95.43 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 95.42 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 95.41 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 95.41 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 95.4 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 95.4 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 95.39 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 95.39 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 95.38 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 95.38 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 95.37 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 95.37 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 95.36 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 95.36 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 95.36 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 95.35 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 95.35 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 95.34 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 95.34 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 95.33 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 95.32 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 95.31 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 95.31 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 95.29 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 95.29 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 95.27 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 95.27 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 95.26 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 95.26 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 95.25 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 95.24 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 95.23 |
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-52 Score=354.10 Aligned_cols=265 Identities=38% Similarity=0.594 Sum_probs=248.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCcccHHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~~~~~ 86 (274)
|++|||+|||+|+||.+|+++|.++|+ +..+|++| +|++++.+.+.+ .|+....++.++++++|+||+||||+.+++
T Consensus 1 M~~~~I~iIG~G~mG~aia~~l~~~g~-~~~~V~v~-dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~p~~~~~ 78 (280)
T 3tri_A 1 MNTSNITFIGGGNMARNIVVGLIANGY-DPNRICVT-NRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVKPHQIKM 78 (280)
T ss_dssp -CCSCEEEESCSHHHHHHHHHHHHTTC-CGGGEEEE-CSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSCGGGHHH
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHCCC-CCCeEEEE-eCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeCHHHHHH
Confidence 356899999999999999999999996 55689999 999999999987 599888888899999999999999999999
Q ss_pred HHHHhccc-cCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCCe
Q 024016 87 VAMQIRPL-LSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI 164 (274)
Q Consensus 87 v~~~i~~~-l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~ 164 (274)
++.++.+. ++++++|||+++|++.+.++++++ +.+++|.|||+|..++.|.+.+++++..++++.+.++++|+.+|..
T Consensus 79 vl~~l~~~~l~~~~iiiS~~agi~~~~l~~~l~~~~~vvr~mPn~p~~v~~g~~~l~~~~~~~~~~~~~v~~l~~~iG~~ 158 (280)
T 3tri_A 79 VCEELKDILSETKILVISLAVGVTTPLIEKWLGKASRIVRAMPNTPSSVRAGATGLFANETVDKDQKNLAESIMRAVGLV 158 (280)
T ss_dssp HHHHHHHHHHTTTCEEEECCTTCCHHHHHHHHTCCSSEEEEECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHHGGGEEE
T ss_pred HHHHHHhhccCCCeEEEEecCCCCHHHHHHHcCCCCeEEEEecCChHHhcCccEEEEeCCCCCHHHHHHHHHHHHHCCCe
Confidence 99999988 888889999999999999999987 4789999999999999999999888888999999999999999987
Q ss_pred EEc-CccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchH
Q 024016 165 WRA-DEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTT 243 (274)
Q Consensus 165 ~~~-~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 243 (274)
+++ +|+++|.+++++||+|+|++.+++++.+++++.|++++++++++.+++.|+.+++.+++.+|..|++.++||||+|
T Consensus 159 ~~v~~E~~~d~~talsgsgpa~~~~~~eal~~a~v~~Gl~~~~a~~l~~~t~~G~a~~~~~~~~~p~~l~~~v~spgGtT 238 (280)
T 3tri_A 159 IWVSSEDQIEKIAALSGSGPAYIFLIMEALQEAAEQLGLTKETAELLTEQTVLGAARMALETEQSVVQLRQFVTSPGGTT 238 (280)
T ss_dssp EECSSHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHCCTTSHH
T ss_pred EEECCHHHhhHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhccCCChHH
Confidence 655 7889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024016 244 IAGIHELEKSGFRGILMNAVVAAAKRSRELS 274 (274)
Q Consensus 244 ~~~l~~l~~~~~~~~~~~a~~~~~~r~~~~~ 274 (274)
+++|+.||++||+..+.++++++++|++||+
T Consensus 239 ~~~l~~le~~g~~~~~~~av~aa~~r~~el~ 269 (280)
T 3tri_A 239 EQAIKVLESGNLRELFIKALTAAVNRAKELS 269 (280)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999984
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-45 Score=309.49 Aligned_cols=244 Identities=36% Similarity=0.625 Sum_probs=199.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCcccHHHHH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~ 88 (274)
+|||+|||+|+||.+|+++|.++|+.+..+|++| +|++++.+.+.+ .|+....++.++++++|+||+|||++.+++++
T Consensus 2 ~~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~-~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~~~~~~~v~ 80 (247)
T 3gt0_A 2 DKQIGFIGCGNMGMAMIGGMINKNIVSSNQIICS-DLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIKPDLYASII 80 (247)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEE-CSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSCTTTHHHHC
T ss_pred CCeEEEECccHHHHHHHHHHHhCCCCCCCeEEEE-eCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeCHHHHHHHH
Confidence 3699999999999999999999997566689999 999999998876 69988888889999999999999999999999
Q ss_pred HHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCCeEEc
Q 024016 89 MQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRA 167 (274)
Q Consensus 89 ~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~~~~ 167 (274)
+++.+.++++++|||++++++.+.+++.++ +.++++.||++|...+.|.+.+++++..+++.++.++++|+.+|..+++
T Consensus 81 ~~l~~~l~~~~~vvs~~~gi~~~~l~~~~~~~~~~v~~~p~~p~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~ 160 (247)
T 3gt0_A 81 NEIKEIIKNDAIIVTIAAGKSIESTENAFNKKVKVVRVMPNTPALVGEGMSALCPNEMVTEKDLEDVLNIFNSFGQTEIV 160 (247)
T ss_dssp ---CCSSCTTCEEEECSCCSCHHHHHHHHCSCCEEEEEECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHHGGGEEEEEC
T ss_pred HHHHhhcCCCCEEEEecCCCCHHHHHHHhCCCCcEEEEeCChHHHHcCceEEEEeCCCCCHHHHHHHHHHHHhCCCEEEe
Confidence 999999999999999999999999998886 4689999999999999998888887778899999999999999998778
Q ss_pred CccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHHH
Q 024016 168 DEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 247 (274)
Q Consensus 168 ~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~l 247 (274)
+|+++|.+++++|++|+|++.+++++.+++++.|++++++++++.+++.|+.+++.+++.+|..|+++++||||+|+++|
T Consensus 161 ~e~~~d~~~a~~g~gpa~~~~~~eal~~a~~~~Gl~~~~a~~~~~~~~~gs~~~~~~~~~~p~~l~~~v~spgG~t~~gl 240 (247)
T 3gt0_A 161 SEKLMDVVTSVSGSSPAYVYMIIEAMADAAVLDGMPRNQAYKFAAQAVLGSAKMVLETGIHPGELKDMVCSPGGTTIEAV 240 (247)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHSCC--------------------
T ss_pred CHHHccHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhcCCCCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCC
Q 024016 248 HELEKSG 254 (274)
Q Consensus 248 ~~l~~~~ 254 (274)
+.||++|
T Consensus 241 ~~le~~~ 247 (247)
T 3gt0_A 241 ATLEEKG 247 (247)
T ss_dssp -------
T ss_pred HHHHhCc
Confidence 9998864
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-43 Score=307.12 Aligned_cols=269 Identities=45% Similarity=0.723 Sum_probs=239.0
Q ss_pred CCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH--HHHHHHHcCceeccCchhhccCCCEEEEeeCcc
Q 024016 5 PIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK--RRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ 82 (274)
Q Consensus 5 ~~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~--~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~ 82 (274)
...|++|||+|||+|+||.+|+.+|.++|+.+..+|++| +|+++ +.+.+.+.|+.+..++.++++++|+||+|||++
T Consensus 17 ~~~~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~-~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~~~ 95 (322)
T 2izz_A 17 NLYFQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMAS-SPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVKPH 95 (322)
T ss_dssp -----CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEE-CSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSCGG
T ss_pred hhccCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEE-CCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeCHH
Confidence 345567899999999999999999999992111299999 99986 788887789988878888889999999999999
Q ss_pred cHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC----CCceEEEcCCcHHhhcCCceEEecCCCCCHHHHHHHHHHh
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG----HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLF 158 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~----~~~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll 158 (274)
++++++.++.+.++++++||++++|++.+.++++++ ..++++.+|+.|...+.|.+++++++..+++..+.++++|
T Consensus 96 ~~~~vl~~l~~~l~~~~ivvs~s~gi~~~~l~~~l~~~~~~~~vv~~~p~~p~~~~~g~~v~~~g~~~~~~~~~~v~~ll 175 (322)
T 2izz_A 96 IIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLL 175 (322)
T ss_dssp GHHHHHHHHGGGCCTTCEEEECCTTCCHHHHHHHHHTTSSCCEEEEEECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHhhcCCCCeEEEEeCCcHHHHcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 999999999988888999999999999887776653 3578999999999888888888777766789999999999
Q ss_pred hhcCCeEEcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCC
Q 024016 159 GSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVAS 238 (274)
Q Consensus 159 ~~~g~~~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (274)
+.+|..++++++.++.++++++++|+|++.+++++.+++++.|++++.+++++.+++.++.+++.+++.+|..|++.+++
T Consensus 176 ~~~G~~~~~~e~~~~~~~a~~g~gpa~~~~~~eala~a~~~~Gl~~~~a~~l~~~~~~g~~~~~~~~~~~p~~l~~~v~s 255 (322)
T 2izz_A 176 SSVGFCTEVEEDLIDAVTGLSGSGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSS 255 (322)
T ss_dssp HTTEEEEECCGGGHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHCC
T ss_pred HhCCCEEEeCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCC
Confidence 99998777889999999999999999999999999999999999999999999999999999887777789999999999
Q ss_pred CCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024016 239 PGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 274 (274)
Q Consensus 239 ~~g~t~~~l~~l~~~~~~~~~~~a~~~~~~r~~~~~ 274 (274)
|+|+|+.+++.+++.+++..+.+++.++++|+++++
T Consensus 256 p~g~t~~~l~~l~~~g~~~~~~~av~~~~~ra~e~~ 291 (322)
T 2izz_A 256 PGGATIHALHVLESGGFRSLLINAVEASCIRTRELQ 291 (322)
T ss_dssp TTSHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999874
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-41 Score=282.19 Aligned_cols=256 Identities=33% Similarity=0.568 Sum_probs=233.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCcccHHHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v 87 (274)
++|||+|||+|+||..++.+|.+.|+ +|.+| +|++++.+.+.+ .|+....++.++++++|+||+|+|++.+.++
T Consensus 2 ~~m~i~iiG~G~mG~~~a~~l~~~g~----~v~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~~~~~~~v 76 (259)
T 2ahr_A 2 NAMKIGIIGVGKMASAIIKGLKQTPH----ELIIS-GSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIKPQLFETV 76 (259)
T ss_dssp -CCEEEEECCSHHHHHHHHHHTTSSC----EEEEE-CSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSCGGGHHHH
T ss_pred CccEEEEECCCHHHHHHHHHHHhCCC----eEEEE-CCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeCcHhHHHH
Confidence 35799999999999999999999998 99999 999999988876 5888777888888899999999999999988
Q ss_pred HHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCCeEE
Q 024016 88 AMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWR 166 (274)
Q Consensus 88 ~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~~~ 166 (274)
+.++. +++++|++.++++.+.+++.++ +.++++.+|++|...++|.+.++++...+++..+.++++|+.+|..++
T Consensus 77 ~~~l~----~~~~vv~~~~~~~~~~l~~~~~~~~~~v~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~~~~ll~~~G~~~~ 152 (259)
T 2ahr_A 77 LKPLH----FKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVSQELQARVRDLTDSFGSTFD 152 (259)
T ss_dssp HTTSC----CCSCEEECCTTCCHHHHHHHHCTTSCEEEEECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHHHTTEEEEE
T ss_pred HHHhc----cCCEEEEeCCCCCHHHHHHhcCCCCCEEEEcCCchHHHcCceEEEEcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 87653 7789999989999998888887 357889999999988888877777766688999999999999997688
Q ss_pred cCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHH
Q 024016 167 ADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAG 246 (274)
Q Consensus 167 ~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~ 246 (274)
++++++|.++++.|++|+|++.+.+++.+++++.|++++++++++.+++.++.+++.+++.+|..|++.+++|+|+|+.+
T Consensus 153 ~~~~~~d~~~al~g~~~~~~~~~~~~la~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~p~~~~~~~ 232 (259)
T 2ahr_A 153 ISEKDFDTFTALAGSSPAYIYLFIEALAKAGVKNGIPKAKALEIVTQTVLASASNLKTSSQSPHDFIDAICSPGGTTIAG 232 (259)
T ss_dssp CCGGGHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHCCTTSHHHHH
T ss_pred ecHHHccHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCChhHHHH
Confidence 89999999999999999999999999999999999999999999999999999988777778999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhhc
Q 024016 247 IHELEKSGFRGILMNAVVAAAKRSREL 273 (274)
Q Consensus 247 l~~l~~~~~~~~~~~a~~~~~~r~~~~ 273 (274)
++.|++.+++..+.++++++++|++||
T Consensus 233 ~~~l~~~g~~~~~~~a~~~~~~r~~~~ 259 (259)
T 2ahr_A 233 LMELERLGLTATVSSAIDKTIDKAKSL 259 (259)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCChHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999987
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-41 Score=282.89 Aligned_cols=259 Identities=37% Similarity=0.628 Sum_probs=232.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v 87 (274)
|++|||+|||+|+||++|+.+|.++|+.+..+|++| +|++++ .|+.+..++.++++++|+||+|+|++.++++
T Consensus 2 m~~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~-~~~~~~------~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~v 74 (262)
T 2rcy_A 2 MENIKLGFMGLGQMGSALAHGIANANIIKKENLFYY-GPSKKN------TTLNYMSSNEELARHCDIIVCAVKPDIAGSV 74 (262)
T ss_dssp CSSSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEE-CSSCCS------SSSEECSCHHHHHHHCSEEEECSCTTTHHHH
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEE-eCCccc------CceEEeCCHHHHHhcCCEEEEEeCHHHHHHH
Confidence 556899999999999999999999992111189999 999876 5888777888888899999999999999999
Q ss_pred HHHhccccCCCCEEEEecCCCCHHHHHHhhCC-CceEEEcCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCCeEE
Q 024016 88 AMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGH-SRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWR 166 (274)
Q Consensus 88 ~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~~-~~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~~~ 166 (274)
+.++.+.+ +++++|++++|++.+.+++.++. .++++++|++|...+.|.+.+++++..+++..+.++++|+.+|..++
T Consensus 75 ~~~l~~~l-~~~~vv~~~~gi~~~~l~~~~~~~~~~v~~~p~~p~~~~~g~~~~~~~~~~~~~~~~~~~~ll~~~G~~~~ 153 (262)
T 2rcy_A 75 LNNIKPYL-SSKLLISICGGLNIGKLEEMVGSENKIVWVMPNTPCLVGEGSFIYCSNKNVNSTDKKYVNDIFNSCGIIHE 153 (262)
T ss_dssp HHHSGGGC-TTCEEEECCSSCCHHHHHHHHCTTSEEEEEECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHhc-CCCEEEEECCCCCHHHHHHHhCCCCcEEEECCChHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 99998888 67889999999999999888874 36789999999988888777777766688999999999999998778
Q ss_pred cCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHH
Q 024016 167 ADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAG 246 (274)
Q Consensus 167 ~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~ 246 (274)
++++.+|.++++++++|++++.+++++.+++++.|++++.+++++.+++.++.++..+++.+|.+|.+.+.+|+++++.+
T Consensus 154 ~~~~~~~~~~a~~~~~~~~~~~~~~al~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~t~~~~ 233 (262)
T 2rcy_A 154 IKEKDMDIATAISGCGPAYVYLFIESLIDAGVKNGLSRELSKNLVLQTIKGSVEMVKKSDQPVQQLKDNIVSPGGITAVG 233 (262)
T ss_dssp CCGGGHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHCCTTSHHHHH
T ss_pred eCHHHccHHHHHHccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCChHHHHH
Confidence 89999999999999999999999999999999999999999999999999999887666778999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024016 247 IHELEKSGFRGILMNAVVAAAKRSRELS 274 (274)
Q Consensus 247 l~~l~~~~~~~~~~~a~~~~~~r~~~~~ 274 (274)
++.|++.+++..+.++++++++|+++++
T Consensus 234 l~~l~~~~~~~~~~~a~~~~~~r~~~~~ 261 (262)
T 2rcy_A 234 LYSLEKNSFKYTVMNAVEAACEKSKAMG 261 (262)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCChHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999985
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=275.57 Aligned_cols=255 Identities=32% Similarity=0.542 Sum_probs=232.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCC-CCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCcccHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSG-VLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g-~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~ 88 (274)
|||+|||+|+||++++.+|.++| + +|++| +|++++.+.+.+ .|+....++.+++ ++|+||+|+|++.+++++
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~----~v~~~-~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~~~~~~~v~ 74 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQGGY----RIYIA-NRGAEKRERLEKELGVETSATLPELH-SDDVLILAVKPQDMEAAC 74 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSC----EEEEE-CSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSCHHHHHHHH
T ss_pred CEEEEECchHHHHHHHHHHHHCCCC----eEEEE-CCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeCchhHHHHH
Confidence 58999999999999999999999 8 99999 999999998887 4888877888888 999999999999999999
Q ss_pred HHhccccCCCCEEEEecCCCCHHHHHHhhCC-CceEEEcCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCCeEEc
Q 024016 89 MQIRPLLSRKKLLVSVAAGVKLKDLQEWTGH-SRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRA 167 (274)
Q Consensus 89 ~~i~~~l~~~~~vis~~~g~~~~~l~~~~~~-~~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~~~~ 167 (274)
.++.+ + +++||+++++++.+.+++.++. .++++.+|++|...+.|.+.++.+...+++..+.++++|+.+|..+++
T Consensus 75 ~~l~~--~-~~ivv~~~~g~~~~~l~~~~~~~~~~v~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~l~~~~g~~~~~ 151 (263)
T 1yqg_A 75 KNIRT--N-GALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEAEVSETDRRIADRIMKSVGLTVWL 151 (263)
T ss_dssp TTCCC--T-TCEEEECCTTCCHHHHHHHTTSCCCEEEEECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHHHTTEEEEEC
T ss_pred HHhcc--C-CCEEEEecCCCCHHHHHHHcCCCCcEEEEcCCHHHHHcCceEEEEcCCCCCHHHHHHHHHHHHhCCCEEEe
Confidence 88876 4 8899999899999889888874 578888999998888888777776666789999999999999976688
Q ss_pred C-ccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHH
Q 024016 168 D-EKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAG 246 (274)
Q Consensus 168 ~-e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~ 246 (274)
+ ++.+|.++++.|++|++++.+++++.|++.+.|++++.+.+++.+++.++.+++.+++.+|..|.+.+++|+|+|..+
T Consensus 152 ~~~~~~~~~~al~g~~~~~~~~~~~~l~e~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (263)
T 1yqg_A 152 DDEEKMHGITGISGSGPAYVFYLLDALQNAAIRQGFDMAEARALSLATFKGAVALAEQTGEDFEKLQKNVTSKGGTTHEA 231 (263)
T ss_dssp SSTTHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTCCTTSHHHHH
T ss_pred CChhhccHHHHHHccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCChhHHHH
Confidence 8 889999999999999999999999999999999999999999999999999888877788999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024016 247 IHELEKSGFRGILMNAVVAAAKRSRELS 274 (274)
Q Consensus 247 l~~l~~~~~~~~~~~a~~~~~~r~~~~~ 274 (274)
++.|++.+++..+.+++.++++|+++++
T Consensus 232 l~~l~~~~~~~~~~~a~~~~~~~~~~~~ 259 (263)
T 1yqg_A 232 VEAFRRHRVAEAISEGVCACVRRSQEME 259 (263)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999874
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=239.53 Aligned_cols=251 Identities=13% Similarity=0.118 Sum_probs=206.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce--eccCchhhccCCCEEEEeeCcccHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK--VLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~--~~~~~~~~~~~aDiIil~v~~~~~~~v~ 88 (274)
|||+|||+|+||++++..|.+.|+ +|++| +|++++.+.+.+.|+. ...++.++ +++|+||+|+|++.+.+++
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~----~V~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~~~~~~~~~ 74 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRRGH----YLIGV-SRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTPIQLILPTL 74 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSCHHHHHHHH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECCHHHHHHHH
Confidence 589999999999999999999998 99999 9999999888777763 45677777 8999999999999999999
Q ss_pred HHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCc------HHh----hcCC-ceEEecCCCCCHHHHHHHHH
Q 024016 89 MQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNT------PSA----VGEA-ATVMSLGGTATEEDGELIGK 156 (274)
Q Consensus 89 ~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~------~~~----~~~g-~~~i~~~~~~~~~~~~~v~~ 156 (274)
.++.+.++++++|+++ ++++...++.... ..+++..+|.. |.. ...+ .+.++++...+++..+.+++
T Consensus 75 ~~l~~~~~~~~~vv~~-~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~~~~~~~~v~~ 153 (279)
T 2f1k_A 75 EKLIPHLSPTAIVTDV-ASVKTAIAEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRS 153 (279)
T ss_dssp HHHGGGSCTTCEEEEC-CSCCHHHHHHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHHHHH
T ss_pred HHHHhhCCCCCEEEEC-CCCcHHHHHHHHHHhCCEeecCcccCCccCCHHHHhHHHhCCCcEEEecCCCCCHHHHHHHHH
Confidence 9999888899999987 5566544433221 11444444432 211 1123 45566655567899999999
Q ss_pred HhhhcCC-eEEcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Q 024016 157 LFGSVGK-IWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLP--RELALGLASQTVLGAASMVTKSGKHPGQLK 233 (274)
Q Consensus 157 ll~~~g~-~~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (274)
+|+.+|. ++++++..++.++++++++|++++. ++.+++.+.|++ ++.+..++.+++.++.+++. .+|..|+
T Consensus 154 l~~~~g~~~~~~~~~~~~~~~~~~~~~p~~i~~---al~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~---~~p~~~~ 227 (279)
T 2f1k_A 154 VLEPLGVKIYLCTPADHDQAVAWISHLPVMVSA---ALIQACAGEKDGDILKLAQNLASSGFRDTSRVGG---GNPELGT 227 (279)
T ss_dssp HHGGGTCEEEECCHHHHHHHHHHHTHHHHHHHH---HHHHHHHTCSCHHHHHHHHHHCCHHHHHHHTGGG---SCHHHHH
T ss_pred HHHHcCCEEEEcCHHHHHHHHHHHhhHHHHHHH---HHHHHHHhcccccchhHHHhhcCCcccchhcccC---CCHHHHH
Confidence 9999996 5778888999999999998888754 778888888887 78889999999999998863 6899999
Q ss_pred HhcCCCCchHHHHHHHHHh--CCHHHHHH----HHHHHHHHHHhhcC
Q 024016 234 DDVASPGGTTIAGIHELEK--SGFRGILM----NAVVAAAKRSRELS 274 (274)
Q Consensus 234 ~~~~~~~g~t~~~l~~l~~--~~~~~~~~----~a~~~~~~r~~~~~ 274 (274)
+.+++|+++|.++++.|++ ++|+..+. +++.++++|+++++
T Consensus 228 ~~~~s~~~~~~~~l~~~~~~l~~~~~~i~~~d~~a~~~~~~~~~~~~ 274 (279)
T 2f1k_A 228 MMATYNQRALLKSLQDYRQHLDQLITLISNQQWPELHRLLQQTNGDR 274 (279)
T ss_dssp HHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 9999999999999999999 89999999 99999999999873
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-31 Score=226.38 Aligned_cols=253 Identities=16% Similarity=0.204 Sum_probs=197.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC--CCCCCCcEEEEeCCCHHHHHHHHHcCc--eeccCchhhccCCCEEEEeeCccc
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKS--GVLPPDRICTAVHSNLKRRDAFESIGV--KVLSDNNAVVEYSDVVVFSVKPQV 83 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~--g~~~~~~v~v~~~r~~~~~~~l~~~g~--~~~~~~~~~~~~aDiIil~v~~~~ 83 (274)
|++|||+|||+|+||.+++.+|.++ |+ +|++| +|++++.+.+.+.|. ....++.++++++|+||+|||++.
T Consensus 4 M~~~~I~iIG~G~mG~~~a~~l~~~g~~~----~V~~~-d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~~ 78 (290)
T 3b1f_A 4 MEEKTIYIAGLGLIGASLALGIKRDHPHY----KIVGY-NRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIKK 78 (290)
T ss_dssp GCCCEEEEECCSHHHHHHHHHHHHHCTTS----EEEEE-CSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHHH
T ss_pred cccceEEEEeeCHHHHHHHHHHHhCCCCc----EEEEE-cCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHHH
Confidence 5678999999999999999999988 45 89999 999999988877776 355677788899999999999999
Q ss_pred HHHHHHHhccc-cCCCCEEEEecCCCCH---HHHHHhhCC--CceEEEcCC------cHHhh----cCCc-eEEecCCCC
Q 024016 84 VKDVAMQIRPL-LSRKKLLVSVAAGVKL---KDLQEWTGH--SRFIRVMPN------TPSAV----GEAA-TVMSLGGTA 146 (274)
Q Consensus 84 ~~~v~~~i~~~-l~~~~~vis~~~g~~~---~~l~~~~~~--~~~~~~~p~------~~~~~----~~g~-~~i~~~~~~ 146 (274)
+++++.++.+. ++++++|+++++ ++. +.+++.++. .+++..+|. .|... ..|. +.+++....
T Consensus 79 ~~~v~~~l~~~~l~~~~ivi~~~~-~~~~~~~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a~~~l~~g~~~~~~~~~~~ 157 (290)
T 3b1f_A 79 TIDFIKILADLDLKEDVIITDAGS-TKYEIVRAAEYYLKDKPVQFVGSHPMAGSHKSGAVAANVNLFENAYYIFSPSCLT 157 (290)
T ss_dssp HHHHHHHHHTSCCCTTCEEECCCS-CHHHHHHHHHHHHTTSSCEEEEEEEC-----CCTTSCCTTTTTTSEEEEEECTTC
T ss_pred HHHHHHHHHhcCCCCCCEEEECCC-CchHHHHHHHHhccccCCEEEEeCCcCCCCcchHHHhhHHHhCCCeEEEecCCCC
Confidence 99999999888 888988886543 333 566776662 334444444 22111 1344 456665556
Q ss_pred CHHHHHHHHHHhhhcCCe-EEcCccchhhHHHhhcchHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Q 024016 147 TEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYI-FLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTK 224 (274)
Q Consensus 147 ~~~~~~~v~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~-~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 224 (274)
+++..+.++++|+.+|.. ++++++.||..++..++.++++ +.+++.+. +.|++.+.+..+..++++++.+++
T Consensus 158 ~~~~~~~v~~l~~~~G~~~~~~~~~~~d~~~a~~s~~~~~~a~~~~~~~~----~~g~~~~~~~~la~~~~~~~~rla-- 231 (290)
T 3b1f_A 158 KPNTIPALQDLLSGLHARYVEIDAAEHDCVTSQISHFPHIIASSLMKQAG----DFSESHEMTKHFAAGGFRDMTRIA-- 231 (290)
T ss_dssp CTTHHHHHHHHTGGGCCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHH----HHHHHCTHHHHHCCHHHHHTTGGG--
T ss_pred CHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHhhHHHHHHHHHHHHHH----hcccchhhHHhhccccHHhhhhhh--
Confidence 788999999999999976 6788888998766666655544 34444443 346556678899999999998887
Q ss_pred cCCChHHHHHhcCCCCchHHHHHHHHHh--CCHHHHHH----HHHHHHHHHHhhc
Q 024016 225 SGKHPGQLKDDVASPGGTTIAGIHELEK--SGFRGILM----NAVVAAAKRSREL 273 (274)
Q Consensus 225 ~~~~~~~~~~~~~~~~g~t~~~l~~l~~--~~~~~~~~----~a~~~~~~r~~~~ 273 (274)
+.+|..|++.+.+|++++..+++.|++ ..++..+. +++.+.+++++++
T Consensus 232 -~~~p~~~~~~~~~n~~~~~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~~~ 285 (290)
T 3b1f_A 232 -ESEPGMWTSILLTNQEAVLDRIENFKQRLDEVSNLIKARDENAIWAFFNQSRQI 285 (290)
T ss_dssp -GSCHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 368999999999999999999999988 47888887 7899999998874
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.1e-31 Score=226.46 Aligned_cols=253 Identities=17% Similarity=0.213 Sum_probs=200.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCc--eeccCchh-hccCCCEEEEeeCcccHHH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV--KVLSDNNA-VVEYSDVVVFSVKPQVVKD 86 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~--~~~~~~~~-~~~~aDiIil~v~~~~~~~ 86 (274)
.+||+|||+|+||.+|+++|.++|+ ..+|++| ||++++.+.+.+.|+ ...+++.+ ++++||+||+|||++.+.+
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~--~~~V~~~-dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilavp~~~~~~ 109 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGF--KGKIYGY-DINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFRE 109 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTC--CSEEEEE-CSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECSCGGGHHH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCC--CCEEEEE-ECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeCCHHHHHH
Confidence 4799999999999999999999997 2379999 999999988888887 45677788 8999999999999999999
Q ss_pred HHHHhccccCCCCEEEEecCCCC--HHHHHHhhCCCceEEEcCCcHHhh----------cCC-ceEEecCCCCCHHHHHH
Q 024016 87 VAMQIRPLLSRKKLLVSVAAGVK--LKDLQEWTGHSRFIRVMPNTPSAV----------GEA-ATVMSLGGTATEEDGEL 153 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~~g~~--~~~l~~~~~~~~~~~~~p~~~~~~----------~~g-~~~i~~~~~~~~~~~~~ 153 (274)
++.++.+.++++++|+++++... .+.+++.++. +++..||..+... ..| .+++++++..+++.++.
T Consensus 110 vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~-~~v~~hPm~G~e~sG~~~A~~~Lf~g~~~il~~~~~~~~~~~~~ 188 (314)
T 3ggo_A 110 IAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK-RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKL 188 (314)
T ss_dssp HHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG-GEECEEECCCCCCCSGGGCCTTTTTTCEEEECCCTTSCHHHHHH
T ss_pred HHHHHhhccCCCcEEEECCCCcHHHHHHHHHhcCC-CEEecCcccCCcccchhhhhhhhhcCCEEEEEeCCCCCHHHHHH
Confidence 99999999999998887644322 3556666654 6777777543211 134 45666666678999999
Q ss_pred HHHHhhhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 024016 154 IGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQL 232 (274)
Q Consensus 154 v~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (274)
++++|+.+|.. +++++++||.++++++++|++++. ++.....+.+.+.+++.++..++|+++.+++. .+|.+|
T Consensus 189 v~~l~~~~G~~v~~~~~~~hD~~~a~~s~lph~~a~---~l~~~~~~~~~~~~~~~~~a~~~frd~tRia~---~~p~~w 262 (314)
T 3ggo_A 189 VKRVWEDVGGVVEYMSPELHDYVFGVVSHLPHAVAF---ALVDTLIHMSTPEVDLFKYPGGGFKDFTRIAK---SDPIMW 262 (314)
T ss_dssp HHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHH---HHHHHHHHHCCSSCCGGGCCTTTTTTHHHHTT---SCHHHH
T ss_pred HHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcCcchHHHHhhccccHHHHHHHhc---CCHHHH
Confidence 99999999975 889999999999999999998754 33344445555566677888999999999874 589999
Q ss_pred HHhcCCCCchHHHHHHHHHhC--CHHHHHHH----HHHHHHHHHhh
Q 024016 233 KDDVASPGGTTIAGIHELEKS--GFRGILMN----AVVAAAKRSRE 272 (274)
Q Consensus 233 ~~~~~~~~g~t~~~l~~l~~~--~~~~~~~~----a~~~~~~r~~~ 272 (274)
.+.+.+|.....+.|+.+++. .+...+.+ .+.+.++++++
T Consensus 263 ~di~~~N~~~~~~~l~~~~~~l~~l~~~l~~~d~~~l~~~~~~a~~ 308 (314)
T 3ggo_A 263 RDIFLENKENVMKAIEGFEKSLNHLKELIVREAEEELVEYLKEVKI 308 (314)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHH
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999988888888888774 55555553 67777777765
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-30 Score=221.74 Aligned_cols=240 Identities=16% Similarity=0.220 Sum_probs=191.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHHH
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~ 88 (274)
+|||+|||+ |+||++++.+|.++|+ +|++| +|++++.+.+.+.|+... ++.++++++|+||+|+|++.+++++
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g~----~V~~~-~r~~~~~~~~~~~g~~~~-~~~~~~~~aDvVi~av~~~~~~~v~ 84 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSAH----HLAAI-EIAPEGRDRLQGMGIPLT-DGDGWIDEADVVVLALPDNIIEKVA 84 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSSS----EEEEE-CCSHHHHHHHHHTTCCCC-CSSGGGGTCSEEEECSCHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHhcCCCcC-CHHHHhcCCCEEEEcCCchHHHHHH
Confidence 469999999 9999999999999999 99999 999999988887776654 6678889999999999999999999
Q ss_pred HHhccccCCCCEEEEecCCCCHHHHHHhhCCCceEEEcCCcHHh--------hcCC-------ceEEecCCCCCHHHHHH
Q 024016 89 MQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNTPSA--------VGEA-------ATVMSLGGTATEEDGEL 153 (274)
Q Consensus 89 ~~i~~~l~~~~~vis~~~g~~~~~l~~~~~~~~~~~~~p~~~~~--------~~~g-------~~~i~~~~~~~~~~~~~ 153 (274)
.++.+.++++++||+++++.+.+.+++..++.++++.||+.|.. ...| .+.++.....+++..+.
T Consensus 85 ~~l~~~l~~~~ivv~~s~~~~~~~l~~~~~~~~~v~~~P~~~~~~~~~~~~~~~~g~l~~~~~~~~i~~~~~~~~~~~~~ 164 (286)
T 3c24_A 85 EDIVPRVRPGTIVLILDAAAPYAGVMPERADITYFIGHPCHPPLFNDETDPAARTDYHGGIAKQAIVCALMQGPEEHYAI 164 (286)
T ss_dssp HHHGGGSCTTCEEEESCSHHHHHTCSCCCTTSEEEEEEECCSCSSCCCCSHHHHTCSSSSSSCEEEEEEEEESCTHHHHH
T ss_pred HHHHHhCCCCCEEEECCCCchhHHHHhhhCCCeEEecCCCCccccccccchhhccCcccccccceeeeeccCCCHHHHHH
Confidence 99998888999999987777666555533456788899987654 5566 34343323357889999
Q ss_pred HHHHhhhcCC----eEEcCccchhhH-HHhh-cchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCC
Q 024016 154 IGKLFGSVGK----IWRADEKLFDAI-TGLS-GSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGK 227 (274)
Q Consensus 154 v~~ll~~~g~----~~~~~e~~~~~~-~a~~-~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (274)
++++|+.+|. +++++++.++.+ .+++ +++++++..+++++.+++++.|++++++++++.+++.++..++.+ .
T Consensus 165 v~~l~~~~G~~~~~~~~v~~~~~~~~~~a~~n~~~~~~~~~~~eal~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~--~ 242 (286)
T 3c24_A 165 GADICETMWSPVTRTHRVTTEQLAILEPGLSEMVAMPFVETMVHAVDECADRYGIDRQAALDFMIGHLNVEIAMWFG--Y 242 (286)
T ss_dssp HHHHHHHHTCSEEEEEECCHHHHHHHTTHHHHTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHTT--S
T ss_pred HHHHHHHhcCCcceEEEeChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh--h
Confidence 9999999997 478898889988 7766 577888888999999988889999999999999999999877654 5
Q ss_pred ChHHHHHhcCCCCchHHHHHHHHHhCCHHHHHH
Q 024016 228 HPGQLKDDVASPGGTTIAGIHELEKSGFRGILM 260 (274)
Q Consensus 228 ~~~~~~~~~~~~~g~t~~~l~~l~~~~~~~~~~ 260 (274)
+|..|.+....+ .......+++.++...+.
T Consensus 243 ~p~~~~di~~~~---i~~~~~~l~~~~~~~~~~ 272 (286)
T 3c24_A 243 SPKVPSDAALRL---MEFAKDIVVKEDWREALN 272 (286)
T ss_dssp SCCC---CCSTT---HHHHHHHHBCTTGGGGGC
T ss_pred CCchhHHHHHHH---HHHHHHHHhccCHHHhcC
Confidence 787888777666 344444456666655544
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-30 Score=218.17 Aligned_cols=252 Identities=17% Similarity=0.223 Sum_probs=194.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce--eccCchhhcc-CCCEEEEeeCcccHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK--VLSDNNAVVE-YSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~--~~~~~~~~~~-~aDiIil~v~~~~~~~v 87 (274)
+||+|||+|+||.+++..|.+.|+ ..+|++| +|++++.+.+.+.|+. ..+++.++++ ++|+||+|||++...++
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~g~--~~~V~~~-d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~~~~~~v 78 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSGF--KGKIYGY-DINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREI 78 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTC--CSEEEEE-CSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHHHHHHH
T ss_pred cEEEEEecCHHHHHHHHHHHhcCC--CcEEEEE-eCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCHHHHHHH
Confidence 589999999999999999999986 2369999 9999998888777764 3557778888 99999999999999999
Q ss_pred HHHhccccCCCCEEEEecCCCC--HHHHHHhhCCCceEEEcCCc------HHhh----cCCc-eEEecCCCCCHHHHHHH
Q 024016 88 AMQIRPLLSRKKLLVSVAAGVK--LKDLQEWTGHSRFIRVMPNT------PSAV----GEAA-TVMSLGGTATEEDGELI 154 (274)
Q Consensus 88 ~~~i~~~l~~~~~vis~~~g~~--~~~l~~~~~~~~~~~~~p~~------~~~~----~~g~-~~i~~~~~~~~~~~~~v 154 (274)
+.++.+.++++++|++++++.. .+.+++.++. .++..+|.. |... ..|. +.+++....+++..+.+
T Consensus 79 ~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~-~~v~~~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~~~~~~~~v 157 (281)
T 2g5c_A 79 AKKLSYILSEDATVTDQGSVKGKLVYDLENILGK-RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKLV 157 (281)
T ss_dssp HHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG-GEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCHHHHHHH
T ss_pred HHHHHhhCCCCcEEEECCCCcHHHHHHHHHhccc-cceeeccccCCccCChhhhhhHHhCCCCEEEecCCCCCHHHHHHH
Confidence 9999888888888777654332 2456666653 244433321 1111 2455 56666556688999999
Q ss_pred HHHhhhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Q 024016 155 GKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLK 233 (274)
Q Consensus 155 ~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (274)
+++|+.+|.. +++++..+|.++++++++|+++.. ++.++..+.|++.+.+..++.++++++.+++. .+|..|+
T Consensus 158 ~~l~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~---~~p~~~~ 231 (281)
T 2g5c_A 158 KRVWEDVGGVVEYMSPELHDYVFGVVSHLPHAVAF---ALVDTLIHMSTPEVDLFKYPGGGFKDFTRIAK---SDPIMWR 231 (281)
T ss_dssp HHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHH---HHHHHHHHHCBTTBCGGGCCTTTGGGC---CC---SCHHHHH
T ss_pred HHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcccchHHHHhhccccHHHHhHHhc---CCHHHHH
Confidence 9999999975 778888899999999999988522 33444445677777788899999999988864 6899999
Q ss_pred HhcCCCCchHHHHHHHHHh--CCHHHHHHH----HHHHHHHHHhh
Q 024016 234 DDVASPGGTTIAGIHELEK--SGFRGILMN----AVVAAAKRSRE 272 (274)
Q Consensus 234 ~~~~~~~g~t~~~l~~l~~--~~~~~~~~~----a~~~~~~r~~~ 272 (274)
+.+++|+++|.++++.|++ .+++..+.+ .+.+.++++++
T Consensus 232 ~~~~sn~~~~~~~l~~~~~~l~~~~~~i~~~d~~~l~~~~~~~~~ 276 (281)
T 2g5c_A 232 DIFLENKENVMKAIEGFEKSLNHLKELIVREAEEELVEYLKEVKI 276 (281)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999 788888753 68888887765
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-29 Score=214.45 Aligned_cols=235 Identities=15% Similarity=0.123 Sum_probs=180.3
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHHH
Q 024016 10 SFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 10 ~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~ 88 (274)
++||+||| +|+||.+++.+|.+.|+ +|++| +|+++. ++.+++++||+||+|||++.+.+++
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~~~G~----~V~~~-~~~~~~-------------~~~~~~~~aDvVilavp~~~~~~vl 82 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRASGY----PISIL-DREDWA-------------VAESILANADVVIVSVPINLTLETI 82 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTC----CEEEE-CTTCGG-------------GHHHHHTTCSEEEECSCGGGHHHHH
T ss_pred CCEEEEEcCCCHHHHHHHHHHHhCCC----eEEEE-ECCccc-------------CHHHHhcCCCEEEEeCCHHHHHHHH
Confidence 35899999 99999999999999999 99999 998652 4556788999999999999999999
Q ss_pred HHhccccCCCCEEEEecCCCCHHHHH---HhhCCCceEEEcCCcHHh--hcCC-ceEEecCCCCCHHHHHHHHHHhhhcC
Q 024016 89 MQIRPLLSRKKLLVSVAAGVKLKDLQ---EWTGHSRFIRVMPNTPSA--VGEA-ATVMSLGGTATEEDGELIGKLFGSVG 162 (274)
Q Consensus 89 ~~i~~~l~~~~~vis~~~g~~~~~l~---~~~~~~~~~~~~p~~~~~--~~~g-~~~i~~~~~~~~~~~~~v~~ll~~~g 162 (274)
.++.+.++++++|+++ ++++...++ +.++ .+++..+|..... ...| .++++++. +++..+.++++|+.+|
T Consensus 83 ~~l~~~l~~~~iv~~~-~svk~~~~~~~~~~~~-~~~v~~hP~~g~~~~~~~g~~~~l~~~~--~~~~~~~v~~l~~~~G 158 (298)
T 2pv7_A 83 ERLKPYLTENMLLADL-TSVKREPLAKMLEVHT-GAVLGLHPMFGADIASMAKQVVVRCDGR--FPERYEWLLEQIQIWG 158 (298)
T ss_dssp HHHGGGCCTTSEEEEC-CSCCHHHHHHHHHHCS-SEEEEEEECSCTTCSCCTTCEEEEEEEE--CGGGTHHHHHHHHHTT
T ss_pred HHHHhhcCCCcEEEEC-CCCCcHHHHHHHHhcC-CCEEeeCCCCCCCchhhcCCeEEEecCC--CHHHHHHHHHHHHHcC
Confidence 9999888888876655 566654443 3333 3455545431111 1233 34455543 6788999999999999
Q ss_pred Ce-EEcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH----HHHHHHhcCCChHHHHHhcC
Q 024016 163 KI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLG----AASMVTKSGKHPGQLKDDVA 237 (274)
Q Consensus 163 ~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 237 (274)
.. ++++++.||.++++++++|+|++. ++.++..+.|++.+.+.++..+++++ +.+++ +.+|..|++.+.
T Consensus 159 ~~~~~~~~~~~d~~~a~~~~~p~~~a~---~l~~~l~~~g~~~~~~~~la~~~f~~~~~~~~ria---~~~p~~~~di~~ 232 (298)
T 2pv7_A 159 AKIYQTNATEHDHNMTYIQALRHFSTF---ANGLHLSKQPINLANLLALSSPIYRLELAMIGRLF---AQDAELYADIIM 232 (298)
T ss_dssp CEEEECCHHHHHHHHHHHTHHHHHHHH---HHHHHHTTSSCCHHHHHHTCCHHHHHHHHHHHHHH---TSCHHHHHHHHC
T ss_pred CEEEECCHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcCCCHHHHHhhcCHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 75 788999999999999999998632 23344445899999999999999999 77775 468999999999
Q ss_pred CCCchHHHHHHHHHh--CCHHHHHH----HHHHHHHHHHhhc
Q 024016 238 SPGGTTIAGIHELEK--SGFRGILM----NAVVAAAKRSREL 273 (274)
Q Consensus 238 ~~~g~t~~~l~~l~~--~~~~~~~~----~a~~~~~~r~~~~ 273 (274)
+|++++. +++.+++ ..++..+. +++.+.++++++.
T Consensus 233 sn~~~~~-~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~a~~~ 273 (298)
T 2pv7_A 233 DKSENLA-VIETLKQTYDEALTFFENNDRQGFIDAFHKVRDW 273 (298)
T ss_dssp ----CHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HCHHHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999 9999988 47777777 6888888888763
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.9e-29 Score=213.07 Aligned_cols=252 Identities=14% Similarity=0.156 Sum_probs=186.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccHHHHH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVKDVA 88 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~~v~ 88 (274)
++||||||+|+||.+||++|+++|| +|++| ||++++++.+.+.|++.++++.|+++.+|+||+|+| ++++++|+
T Consensus 3 M~kIgfIGlG~MG~~mA~~L~~~G~----~v~v~-dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~ 77 (300)
T 3obb_A 3 MKQIAFIGLGHMGAPMATNLLKAGY----LLNVF-DLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLY 77 (300)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTC----EEEEE-CSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHH
T ss_pred cCEEEEeeehHHHHHHHHHHHhCCC----eEEEE-cCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHH
Confidence 5699999999999999999999999 99999 999999999999999999999999999999999998 45688888
Q ss_pred HH---hccccCCCCEEEEecCCCCHH---HHHHhhC--CCceEEE-cCCcHHhhcCCc-eEEecCCCCCHHHHHHHHHHh
Q 024016 89 MQ---IRPLLSRKKLLVSVAAGVKLK---DLQEWTG--HSRFIRV-MPNTPSAVGEAA-TVMSLGGTATEEDGELIGKLF 158 (274)
Q Consensus 89 ~~---i~~~l~~~~~vis~~~g~~~~---~l~~~~~--~~~~~~~-~p~~~~~~~~g~-~~i~~~~~~~~~~~~~v~~ll 158 (274)
.. +.+.+++|+++|+++ +++++ ++.+++. +..++.. +...|.....|. ++++.| +++.+++++++|
T Consensus 78 ~~~~g~~~~~~~g~iiId~s-T~~p~~~~~~a~~~~~~G~~~lDaPVsGg~~~A~~G~L~imvGG---~~~~~~~~~p~l 153 (300)
T 3obb_A 78 LDDDGLLAHIAPGTLVLECS-TIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVGG---DAEALEKARPLF 153 (300)
T ss_dssp HSSSSSTTSCCC-CEEEECS-CCCHHHHHHHHHHHHTTTCEEEECCEESCHHHHHHTCEEEEEES---CHHHHHHHHHHH
T ss_pred hchhhhhhcCCCCCEEEECC-CCCHHHHHHHHHHHHHcCCEEEecCCCCCHHHHHhCCEEEEEeC---CHHHHHHHHHHH
Confidence 54 667788999999874 45554 3444443 3344432 123455555665 455555 789999999999
Q ss_pred hhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCC----ChH
Q 024016 159 GSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGK----HPG 230 (274)
Q Consensus 159 ~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 230 (274)
+.+|+. +++++......+.++ .+.+++..+.++.|+ +++.|+|++.+.+++..+..++..+-. ... ...
T Consensus 154 ~~~g~~i~~~G~~G~g~~~Kl~--~N~l~~~~~~a~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~-~~p~~~~~~~ 230 (300)
T 3obb_A 154 EAMGRNIFHAGPDGAGQVAKVC--NNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEV-YNPWPGVMEN 230 (300)
T ss_dssp HHHEEEEEEEESTTHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCCHHHHH-CCCSTTTSTT
T ss_pred HHhCCCEEEeCCccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCcccchHHHh-hccccchhhh
Confidence 999975 788876555555543 345555566667665 569999999999999877765544322 221 123
Q ss_pred HHHHhcCCCCchHHHHHHH-------HHhCCHHHHHHHHHHHHHHHHhhc
Q 024016 231 QLKDDVASPGGTTIAGIHE-------LEKSGFRGILMNAVVAAAKRSREL 273 (274)
Q Consensus 231 ~~~~~~~~~~g~t~~~l~~-------l~~~~~~~~~~~a~~~~~~r~~~~ 273 (274)
.+....++|++.....++. .++.+++..+.+.+.+.|+++.+.
T Consensus 231 ~~~~~~~~~~f~~~l~~KDl~l~~~~A~~~g~~~p~~~~a~~~~~~a~~~ 280 (300)
T 3obb_A 231 APASRDYSGGFMAQLMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQ 280 (300)
T ss_dssp SGGGGTTCSSSBHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHT
T ss_pred ccccccCCccchHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhC
Confidence 3456667898887766544 344577777888888888888764
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-29 Score=219.94 Aligned_cols=246 Identities=15% Similarity=0.133 Sum_probs=186.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhcc----CCCEEEEeeCcccHH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE----YSDVVVFSVKPQVVK 85 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~----~aDiIil~v~~~~~~ 85 (274)
.+||+|||+|+||++|+++|.++|+ +|++| ||++++.+.+.+.|+....++.++++ ++|+||+|||++.+.
T Consensus 8 ~~kIgIIG~G~mG~slA~~L~~~G~----~V~~~-dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~~~~~ 82 (341)
T 3ktd_A 8 SRPVCILGLGLIGGSLLRDLHAANH----SVFGY-NRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPMTAID 82 (341)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCHHHHH
T ss_pred CCEEEEEeecHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCHHHHH
Confidence 3689999999999999999999999 99999 99999998888889877777777665 479999999999999
Q ss_pred HHHHHhccccCCCCEEEEecCCCCHH---HHHHhhCCCceEEEcCCcHHh----------hcCC-ceEEecCCCCCHH--
Q 024016 86 DVAMQIRPLLSRKKLLVSVAAGVKLK---DLQEWTGHSRFIRVMPNTPSA----------VGEA-ATVMSLGGTATEE-- 149 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~~g~~~~---~l~~~~~~~~~~~~~p~~~~~----------~~~g-~~~i~~~~~~~~~-- 149 (274)
+++.++.+. +++++|+++ ++++.. .+++.+++.+++..||....+ ...| .+++++++..+++
T Consensus 83 ~vl~~l~~~-~~~~iv~Dv-~Svk~~i~~~~~~~~~~~~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~iltp~~~~~~e~~ 160 (341)
T 3ktd_A 83 SLLDAVHTH-APNNGFTDV-VSVKTAVYDAVKARNMQHRYVGSHPMAGTANSGWSASMDGLFKRAVWVVTFDQLFDGTDI 160 (341)
T ss_dssp HHHHHHHHH-CTTCCEEEC-CSCSHHHHHHHHHTTCGGGEECEEECCSCC-CCGGGCCSSTTTTCEEEECCGGGTSSCCC
T ss_pred HHHHHHHcc-CCCCEEEEc-CCCChHHHHHHHHhCCCCcEecCCccccccccchhhhhhHHhcCCeEEEEeCCCCChhhh
Confidence 999998886 788877765 556654 444444434566556542111 0122 3566766555667
Q ss_pred ------HHHHHHHHhhhcCC-eEEcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Q 024016 150 ------DGELIGKLFGSVGK-IWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMV 222 (274)
Q Consensus 150 ------~~~~v~~ll~~~g~-~~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~ 222 (274)
.++.++++|+.+|. ++++++++||.++++++++|++++.. |...... +.+.+..+..++|++.++++
T Consensus 161 ~~~~~~~~~~v~~l~~~~Ga~v~~~~~~~HD~~~A~vshlPh~ia~a---L~~~~~~---~~~~~~~laa~gfrd~tRia 234 (341)
T 3ktd_A 161 NSTWISIWKDVVQMALAVGAEVVPSRVGPHDAAAARVSHLTHILAET---LAIVGDN---GGALSLSLAAGSYRDSTRVA 234 (341)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHHH---HHHHHHH---THHHHHHHCCHHHHHHTGGG
T ss_pred ccchHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHhHHHHHHHHH---HHHHhhc---chHHHHHHccccHHHHHHHh
Confidence 89999999999995 58899999999999999999988663 3333332 34677889999999999886
Q ss_pred HhcCCChHHHHHhcCCCCchHHHHHHHHHhC--CHHHHHHH---HHHHHHHHHh
Q 024016 223 TKSGKHPGQLKDDVASPGGTTIAGIHELEKS--GFRGILMN---AVVAAAKRSR 271 (274)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~g~t~~~l~~l~~~--~~~~~~~~---a~~~~~~r~~ 271 (274)
. .+|.+|.+.+.+|.+.+.+.|+.+++. .+...+.+ .+.+.+++++
T Consensus 235 ~---s~p~lw~di~~~N~~~~~~~l~~~~~~L~~l~~~l~~~d~~l~~~~~~~~ 285 (341)
T 3ktd_A 235 G---TDPGLVRAMCESNAGPLVKALDEALAILHEAREGLTAEQPNIEQLADNGY 285 (341)
T ss_dssp G---SCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred c---CCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4 689999999999998888888888664 34443332 3444454444
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.95 E-value=7e-27 Score=200.59 Aligned_cols=249 Identities=13% Similarity=0.198 Sum_probs=174.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcc-cHHHHH-
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVKDVA- 88 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~-~~~~v~- 88 (274)
+||||||+|+||.+||++|+++|| +|++| ||++++.+.+.+.|+..++++.|+++++|+||+|+|++ ++++++
T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~~G~----~V~v~-dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~ 80 (297)
T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLEAGY----ELVVW-NRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFS 80 (297)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC----EEEEC--------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSC
T ss_pred CcEEEEecHHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHH
Confidence 489999999999999999999999 99999 99999999999999999999999999999999999865 456655
Q ss_pred HHhccccCCCCEEEEecCCCCHHH---HHHhhC--CCceEEE-cCCcHHhhcCCc-eEEecCCCCCHHHHHHHHHHhhhc
Q 024016 89 MQIRPLLSRKKLLVSVAAGVKLKD---LQEWTG--HSRFIRV-MPNTPSAVGEAA-TVMSLGGTATEEDGELIGKLFGSV 161 (274)
Q Consensus 89 ~~i~~~l~~~~~vis~~~g~~~~~---l~~~~~--~~~~~~~-~p~~~~~~~~g~-~~i~~~~~~~~~~~~~v~~ll~~~ 161 (274)
.++.+.+++++++|+++ +++++. +.+.+. +..++.. +...|.....|. ++++.+ +++.+++++++|+.+
T Consensus 81 ~~~~~~~~~~~iiid~s-T~~p~~~~~~~~~~~~~g~~~ldapVsGg~~~a~~g~l~im~gG---~~~~~~~~~~~l~~~ 156 (297)
T 4gbj_A 81 MELVEKLGKDGVHVSMS-TISPETSRQLAQVHEWYGAHYVGAPIFARPEAVRAKVGNICLSG---NAGAKERIKPIVENF 156 (297)
T ss_dssp HHHHHHHCTTCEEEECS-CCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCCEEEEEE---CHHHHHHHHHHHHTT
T ss_pred HHHHhhcCCCeEEEECC-CCChHHHHHHHHHHHhcCCceecCCcCCCccccccccceeeccc---chhHHHHHHHHHHHh
Confidence 45777788999999874 455543 333332 3344432 223444445555 444444 689999999999999
Q ss_pred CCe-EEcCcc-chhhHHHhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhc
Q 024016 162 GKI-WRADEK-LFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDV 236 (274)
Q Consensus 162 g~~-~~~~e~-~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (274)
|+. +++++. .....+.++ .+.+.+..+.++.|+ +++.|+|++.+++++..+..++..+ .. ....+.+..
T Consensus 157 g~~i~~~g~~~G~g~~~Kl~--~N~~~~~~~~~~aEa~~la~~~Gld~~~~~~~l~~~~~~s~~~-~~---~~~~~~~~~ 230 (297)
T 4gbj_A 157 VKGVFDFGDDPGAANVIKLA--GNFMIACSLEMMGEAFTMAEKNGISRQSIYEMLTSTLFAAPIF-QN---YGKLVASNT 230 (297)
T ss_dssp CSEEEECCSCTTHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTTTCSHHH-HH---HHHHHHHTC
T ss_pred hCCeEEecCCccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccCchh-hc---cCccccCCC
Confidence 975 777753 344444443 355556666677776 5799999999999998877655433 21 234555566
Q ss_pred CCC-CchHHHHHHH-------HHhCCHHHHHHHHHHHHHHHHhhcC
Q 024016 237 ASP-GGTTIAGIHE-------LEKSGFRGILMNAVVAAAKRSRELS 274 (274)
Q Consensus 237 ~~~-~g~t~~~l~~-------l~~~~~~~~~~~a~~~~~~r~~~~~ 274 (274)
+.| ++.....++. .++.+++..+.+++++.|+++.+.|
T Consensus 231 ~~p~~f~~~l~~KDl~l~~~~A~~~g~~~p~~~~~~~~~~~a~~~G 276 (297)
T 4gbj_A 231 YEPVAFRFPLGLKDINLTLQTASDVNAPMPFADIIRNRFISGLAKG 276 (297)
T ss_dssp CCSCSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCccchhHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHhCC
Confidence 665 6666655443 4556888888899999998887643
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.5e-27 Score=207.03 Aligned_cols=218 Identities=17% Similarity=0.188 Sum_probs=175.9
Q ss_pred CC-CeEEEEcccHHHHHHHHHHHhC------CCCCCCcEEEEeCCC-HHHHHHHHHcCcee----ccCchhhccCCCEEE
Q 024016 9 ES-FILGFIGAGKMAESIAKGVAKS------GVLPPDRICTAVHSN-LKRRDAFESIGVKV----LSDNNAVVEYSDVVV 76 (274)
Q Consensus 9 ~~-~~IgiIG~G~mG~~~a~~L~~~------g~~~~~~v~v~~~r~-~~~~~~l~~~g~~~----~~~~~~~~~~aDiIi 76 (274)
+. +||||||+|+||.+++++|.++ |+ +|+++ +|+ +...+...+.|+.. ..++.+++++||+||
T Consensus 52 ~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~----~ViVg-~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVI 126 (525)
T 3fr7_A 52 KGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKIG-LRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVL 126 (525)
T ss_dssp TTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCC----EEEEE-ECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEE
T ss_pred cCCCEEEEEeEhHHHHHHHHHHHhcccccCCCC----EEEEE-eCCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEE
Confidence 44 7999999999999999999999 98 88877 554 34455555678765 257789999999999
Q ss_pred EeeCcccHHHHHHHhccccCCCCEEEEecCCCCHHHHHH---hhC-CCceEEEcCCcHHhh-------c-----CCce-E
Q 024016 77 FSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQE---WTG-HSRFIRVMPNTPSAV-------G-----EAAT-V 139 (274)
Q Consensus 77 l~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~---~~~-~~~~~~~~p~~~~~~-------~-----~g~~-~ 139 (274)
+++|++...+++.++.+.+++|++ |+++.|+++..+++ .++ +.+++++||+.|... + +|.+ .
T Consensus 127 LaVP~~~~~eVl~eI~p~LK~GaI-Ls~AaGf~I~~le~~~i~~p~dv~VVrVmPNtPg~~VR~~y~~G~~~~g~Gv~~l 205 (525)
T 3fr7_A 127 LLISDAAQADNYEKIFSHMKPNSI-LGLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 205 (525)
T ss_dssp ECSCHHHHHHHHHHHHHHSCTTCE-EEESSSHHHHHHHHTTCCCCTTSEEEEEEESSCHHHHHHHHHHHTTSTTCSCCEE
T ss_pred ECCChHHHHHHHHHHHHhcCCCCe-EEEeCCCCHHHHhhhcccCCCCCcEEEEecCCCchhHHHHHhcccccccCCccEE
Confidence 999999988999999999999987 68889999888875 344 578999999999876 4 6777 5
Q ss_pred EecCCCCCHHHHHHHHHHhhhcCCeEE--c------CccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 024016 140 MSLGGTATEEDGELIGKLFGSVGKIWR--A------DEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLA 211 (274)
Q Consensus 140 i~~~~~~~~~~~~~v~~ll~~~g~~~~--~------~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~ 211 (274)
++...+.+.+..+.+..++..+|.... . .++.++..++++|++|+|+ +++.|++++.|+++++|+.+.
T Consensus 206 iAv~qd~tgea~e~alala~aiG~~~vieTtf~eE~e~DLfgeqtvLsG~~pAli----eA~~d~lVe~G~~pe~Ay~~~ 281 (525)
T 3fr7_A 206 FAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIV----EALFRRYTEQGMDEEMAYKNT 281 (525)
T ss_dssp EEEEECSSSCHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHTTTTHHHHHHH----HHHHHHHHHTTCCHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHHHCCCCeeeeeeeeeehhHhhhhhHhhhcCcHHHHH----HHHHHHHHHcCCCHHHHHHHH
Confidence 555556677899999999999997522 1 1346777788999988864 788899999999999999999
Q ss_pred HHHHH-HHHHHHHhcCCChHHHHHhcCC
Q 024016 212 SQTVL-GAASMVTKSGKHPGQLKDDVAS 238 (274)
Q Consensus 212 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 238 (274)
.+.+. +...++.+.|. ..+.+.++.
T Consensus 282 ~qel~~~i~~li~e~G~--~~m~~~~S~ 307 (525)
T 3fr7_A 282 VEGITGIISKTISKKGM--LEVYNSLTE 307 (525)
T ss_dssp HHHHHTHHHHHHHHHCH--HHHHHTSCH
T ss_pred HHHHHHHHHHHHHHhHH--HHHHHHcCc
Confidence 99988 89999987663 345555543
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-25 Score=191.47 Aligned_cols=252 Identities=17% Similarity=0.205 Sum_probs=179.5
Q ss_pred CCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcc-
Q 024016 4 FPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ- 82 (274)
Q Consensus 4 ~~~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~- 82 (274)
|.....++||+|||+|+||.+|+++|.++|+ +|++| ||++++.+.+.+.|+...+++.++++++|+||+|+|+.
T Consensus 3 m~~~~~~~~IgiIG~G~mG~~~A~~l~~~G~----~V~~~-dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~ 77 (306)
T 3l6d_A 3 LSDESFEFDVSVIGLGAMGTIMAQVLLKQGK----RVAIW-NRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNH 77 (306)
T ss_dssp CCCCCCSCSEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHH
T ss_pred CCcccCCCeEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHH
Confidence 4455567899999999999999999999999 99999 99999999998889988889999999999999999965
Q ss_pred cHHHHHH--HhccccCCCCEEEEecCCCCH--HHHHHhhC--CCceEEEcCC--cHHhhcC-CceEEecCCCCCHHHHHH
Q 024016 83 VVKDVAM--QIRPLLSRKKLLVSVAAGVKL--KDLQEWTG--HSRFIRVMPN--TPSAVGE-AATVMSLGGTATEEDGEL 153 (274)
Q Consensus 83 ~~~~v~~--~i~~~l~~~~~vis~~~g~~~--~~l~~~~~--~~~~~~~~p~--~~~~~~~-g~~~i~~~~~~~~~~~~~ 153 (274)
.+++++. .+.+ +.++++||++++..+. ..+.+.+. +..++.. |. .|...+. +.++++.+ +++.+++
T Consensus 78 ~~~~v~~~~~l~~-~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vda-pv~g~~~~~~~~~~~i~~gg---~~~~~~~ 152 (306)
T 3l6d_A 78 ATHEVLGMPGVAR-ALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKG-MIVAYPRNVGHRESHSIHTG---DREAFEQ 152 (306)
T ss_dssp HHHHHHTSTTHHH-HTTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEE-EEESCGGGTTCTTCEEEEEE---CHHHHHH
T ss_pred HHHHHhcccchhh-ccCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEec-ccccCcccccCCceEEEEcC---CHHHHHH
Confidence 5888886 5644 5689999987554332 34444442 3445543 21 2222333 34555554 6899999
Q ss_pred HHHHhhhcCC-eEEc--Ccc-chhhHHHhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHH-HHHHHHHhc
Q 024016 154 IGKLFGSVGK-IWRA--DEK-LFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVL-GAASMVTKS 225 (274)
Q Consensus 154 v~~ll~~~g~-~~~~--~e~-~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~~Gl~~~~~~~~~~~~~~-~~~~~~~~~ 225 (274)
++++|+.+|. ++++ +++ ....... .+++..+..+.|+ +++.|++++.+.+++..+.. +..+++...
T Consensus 153 ~~~ll~~lg~~~~~~~~g~~~g~g~~~k------~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~~~s~~~~~~ 226 (306)
T 3l6d_A 153 HRALLEGLAGHTVFLPWDEALAFATVLH------AHAFAAMVTFFEAVGAGDRFGLPVSKTARLLLETSRFFVADALEEA 226 (306)
T ss_dssp HHHHHHTTCSEEEECCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCEEEecCCCCccHHHHHH------HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcccHHHHHH
Confidence 9999999964 5778 642 1111111 2223334455554 57999999999999998864 444554421
Q ss_pred CCChHHHHHhcCCCCchHHH--------HHHHHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024016 226 GKHPGQLKDDVASPGGTTIA--------GIHELEKSGFRGILMNAVVAAAKRSRELS 274 (274)
Q Consensus 226 ~~~~~~~~~~~~~~~g~t~~--------~l~~l~~~~~~~~~~~a~~~~~~r~~~~~ 274 (274)
...+.+..++|++++.. .++..++.+++..+.+++.+.|+++.+.+
T Consensus 227 ---~~~~~~~~~~~~~~~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 280 (306)
T 3l6d_A 227 ---VRRLETQDFKGDQARLDVHADAFAHIAQSLHAQGVWTPVFDAVCQVVQRAAAMG 280 (306)
T ss_dssp ---HHHHHHTCCCTTSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred ---HHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcC
Confidence 33556666788764332 35567778999999999999999988753
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.9e-25 Score=189.05 Aligned_cols=251 Identities=12% Similarity=0.145 Sum_probs=178.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-ccCchhhccCCCEEEEeeCc-ccHHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-LSDNNAVVEYSDVVVFSVKP-QVVKD 86 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~-~~~~~~~~~~aDiIil~v~~-~~~~~ 86 (274)
++|||+|||+|+||.+|+.+|.++|+ +|++| ||++++.+.+.+.|... .+++.++++++|+||+|||+ +.++.
T Consensus 6 ~~~~I~iIG~G~mG~~~a~~l~~~G~----~V~~~-dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~ 80 (303)
T 3g0o_A 6 TDFHVGIVGLGSMGMGAARSCLRAGL----STWGA-DLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQ 80 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC----eEEEE-ECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHH
Confidence 45799999999999999999999999 99999 99999999999888876 78889999999999999997 47888
Q ss_pred HH---HHhccccCCCCEEEEecCCCCHH---HHHHhhC--CCceEEEcC--CcHHhhcCCceEEecCCCCCHHHHHHHHH
Q 024016 87 VA---MQIRPLLSRKKLLVSVAAGVKLK---DLQEWTG--HSRFIRVMP--NTPSAVGEAATVMSLGGTATEEDGELIGK 156 (274)
Q Consensus 87 v~---~~i~~~l~~~~~vis~~~g~~~~---~l~~~~~--~~~~~~~~p--~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ 156 (274)
++ +++.+.++++++||++++ +.+. .+.+.+. +..++. +| ..|.....|...+..+ .+++.++++++
T Consensus 81 v~~~~~~l~~~l~~g~ivv~~st-~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~~~~g--g~~~~~~~~~~ 156 (303)
T 3g0o_A 81 VLFGEDGVAHLMKPGSAVMVSST-ISSADAQEIAAALTALNLNMLD-APVSGGAVKAAQGEMTVMAS--GSEAAFTRLKP 156 (303)
T ss_dssp HHC--CCCGGGSCTTCEEEECSC-CCHHHHHHHHHHHHTTTCEEEE-CCEESCHHHHHTTCEEEEEE--CCHHHHHHHHH
T ss_pred HHhChhhHHhhCCCCCEEEecCC-CCHHHHHHHHHHHHHcCCeEEe-CCCCCChhhhhcCCeEEEeC--CCHHHHHHHHH
Confidence 88 778888899999998754 4443 3444443 234444 44 3444455665443333 26889999999
Q ss_pred HhhhcCCe-EEcCc-cchhhHHHhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 024016 157 LFGSVGKI-WRADE-KLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQ 231 (274)
Q Consensus 157 ll~~~g~~-~~~~e-~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (274)
+|+.+|.. +++++ ........+. .+.+.+..+..+.|+ +++.|++++++.+++..+..++..+ .. ..+ .
T Consensus 157 ll~~~g~~~~~~~~~~g~a~~~Kl~--~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~-~~--~~~-~ 230 (303)
T 3g0o_A 157 VLDAVASNVYRISDTPGAGSTVKII--HQLLAGVHIAAAAEAMALAARAGIPLDVMYDVVTHAAGNSWMF-EN--RMQ-H 230 (303)
T ss_dssp HHHHHEEEEEEEESSTTHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHH-HH--HHH-H
T ss_pred HHHHHCCCEEECCCCCcHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCHHH-Hh--hhH-H
Confidence 99999965 67765 3333333332 233433444445554 5789999999999887654333221 11 112 3
Q ss_pred HHHhcCCCCchHHHH-------HHHHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024016 232 LKDDVASPGGTTIAG-------IHELEKSGFRGILMNAVVAAAKRSRELS 274 (274)
Q Consensus 232 ~~~~~~~~~g~t~~~-------l~~l~~~~~~~~~~~a~~~~~~r~~~~~ 274 (274)
+.+..+.|++..... ++..++.|++..+.+++.+.|+++.+.+
T Consensus 231 ~~~~~~~~~~~~~~~~kD~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 280 (303)
T 3g0o_A 231 VVDGDYTPRSAVDIFVKDLGLVADTAKALRFPLPLASTALNMFTSASNAG 280 (303)
T ss_dssp HHTTCCCCSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred HhcCCCCCCCchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcC
Confidence 344556787766554 4445777888899999999999987653
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.7e-25 Score=189.32 Aligned_cols=251 Identities=15% Similarity=0.190 Sum_probs=180.9
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCc-ccHH
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVVK 85 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~-~~~~ 85 (274)
..++|||+|||+|+||.+|+++|.++|| +|++| ||++++.+.+.+.|+...+++.++++++|+||+|||. .+++
T Consensus 18 ~~~m~~I~iIG~G~mG~~~A~~l~~~G~----~V~~~-dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~ 92 (310)
T 3doj_A 18 GSHMMEVGFLGLGIMGKAMSMNLLKNGF----KVTVW-NRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAAL 92 (310)
T ss_dssp CCCSCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHH
T ss_pred cccCCEEEEECccHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHH
Confidence 3456899999999999999999999999 99999 9999999999999999888999999999999999985 5789
Q ss_pred HHH---HHhccccCCCCEEEEecCCCCHH---HHHHhhC--CCceEEEcC--CcHHhhcCCce-EEecCCCCCHHHHHHH
Q 024016 86 DVA---MQIRPLLSRKKLLVSVAAGVKLK---DLQEWTG--HSRFIRVMP--NTPSAVGEAAT-VMSLGGTATEEDGELI 154 (274)
Q Consensus 86 ~v~---~~i~~~l~~~~~vis~~~g~~~~---~l~~~~~--~~~~~~~~p--~~~~~~~~g~~-~i~~~~~~~~~~~~~v 154 (274)
+++ .++.+.++++++||+++ ++++. .+.+.+. +..++. +| ..+.....|.. +++.+ +++.++.+
T Consensus 93 ~v~~~~~~l~~~l~~g~~vv~~s-t~~~~~~~~~~~~~~~~g~~~v~-~pv~g~~~~a~~g~l~i~~gg---~~~~~~~~ 167 (310)
T 3doj_A 93 SVVFDKGGVLEQICEGKGYIDMS-TVDAETSLKINEAITGKGGRFVE-GPVSGSKKPAEDGQLIILAAG---DKALFEES 167 (310)
T ss_dssp HHHHSTTCGGGGCCTTCEEEECS-CCCHHHHHHHHHHHHHTTCEEEE-CCEECCHHHHHHTCEEEEEEE---CHHHHHHH
T ss_pred HHHhCchhhhhccCCCCEEEECC-CCCHHHHHHHHHHHHHcCCEEEe-CCCCCChhHHhcCCeEEEEcC---CHHHHHHH
Confidence 998 78888889999999875 44443 3333332 233433 33 23333344554 44444 68899999
Q ss_pred HHHhhhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 024016 155 GKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPG 230 (274)
Q Consensus 155 ~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (274)
+++|+.+|.. +++++......+.++ .+.+.+..+..+.|+ +.+.|++++++.+++..+...+.. ... ...
T Consensus 168 ~~ll~~~g~~~~~~g~~g~a~~~Kl~--~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~-~~~---~~~ 241 (310)
T 3doj_A 168 IPAFDVLGKRSFYLGQVGNGAKMKLI--VNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILDLGAMTNPM-FKG---KGP 241 (310)
T ss_dssp HHHHHHHEEEEEECSSTTHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHSTTCCHH-HHH---HHH
T ss_pred HHHHHHhCCCEEEeCCcCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccHH-HHH---Hhh
Confidence 9999999965 778765444444443 344544445555555 568999999999988765332221 111 123
Q ss_pred HHHHhcCCCCchHHHHHHHH-------HhCCHHHHHHHHHHHHHHHHhhc
Q 024016 231 QLKDDVASPGGTTIAGIHEL-------EKSGFRGILMNAVVAAAKRSREL 273 (274)
Q Consensus 231 ~~~~~~~~~~g~t~~~l~~l-------~~~~~~~~~~~a~~~~~~r~~~~ 273 (274)
.+.+..+.|++......+.+ ++.++...+.+++.+.|+++.+.
T Consensus 242 ~~~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~ 291 (310)
T 3doj_A 242 SMNKSSYPPAFPLKHQQKDMRLALALGDENAVSMPVAAAANEAFKKARSL 291 (310)
T ss_dssp HHHTTCCCCSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred hhhcCCCCCCccHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHc
Confidence 44555567887666554443 66788888999999999988764
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-25 Score=195.34 Aligned_cols=220 Identities=20% Similarity=0.219 Sum_probs=166.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH-HHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-RDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v 87 (274)
+.+||+|||+|+||++++.+|.+.|+ +|++| +|++++ .+.+.+.|+... ++.+++++||+||+|||++...++
T Consensus 15 ~~~~I~IIG~G~mG~alA~~L~~~G~----~V~~~-~~~~~~~~~~a~~~G~~~~-~~~e~~~~aDvVilavp~~~~~~v 88 (338)
T 1np3_A 15 QGKKVAIIGYGSQGHAHACNLKDSGV----DVTVG-LRSGSATVAKAEAHGLKVA-DVKTAVAAADVVMILTPDEFQGRL 88 (338)
T ss_dssp HTSCEEEECCSHHHHHHHHHHHHTTC----CEEEE-CCTTCHHHHHHHHTTCEEE-CHHHHHHTCSEEEECSCHHHHHHH
T ss_pred cCCEEEEECchHHHHHHHHHHHHCcC----EEEEE-ECChHHHHHHHHHCCCEEc-cHHHHHhcCCEEEEeCCcHHHHHH
Confidence 45799999999999999999999998 99999 998766 455555788765 777888999999999999999999
Q ss_pred HH-HhccccCCCCEEEEecCCCCHHHHHHhh-C-CCceEEEcCCcHHh-------hcCCceEE-ecCCCCCHHHHHHHHH
Q 024016 88 AM-QIRPLLSRKKLLVSVAAGVKLKDLQEWT-G-HSRFIRVMPNTPSA-------VGEAATVM-SLGGTATEEDGELIGK 156 (274)
Q Consensus 88 ~~-~i~~~l~~~~~vis~~~g~~~~~l~~~~-~-~~~~~~~~p~~~~~-------~~~g~~~i-~~~~~~~~~~~~~v~~ 156 (274)
+. ++.+.++++++|+++ +|++. .+.... + +..+++.||+.|.. .+.|...+ ++....+.+..+.+..
T Consensus 89 ~~~~i~~~l~~~~ivi~~-~gv~~-~~~~~~~~~~~~vv~~~P~gp~~a~~~l~~~G~g~~~ii~~~~~~~~~a~~~~~~ 166 (338)
T 1np3_A 89 YKEEIEPNLKKGATLAFA-HGFSI-HYNQVVPRADLDVIMIAPKAPGHTVRSEFVKGGGIPDLIAIYQDASGNAKNVALS 166 (338)
T ss_dssp HHHHTGGGCCTTCEEEES-CCHHH-HTTSSCCCTTCEEEEEEESSCSHHHHHHHHTTCCCCEEEEEEECSSSCHHHHHHH
T ss_pred HHHHHHhhCCCCCEEEEc-CCchh-HHHhhcCCCCcEEEeccCCCCchhHHHHHhccCCCeEEEEecCCCCHHHHHHHHH
Confidence 98 999989999998875 66654 443333 2 34588899987754 34466554 5554556788899999
Q ss_pred HhhhcCC----eEEcCccc---hhhH---HHhhcchHHHHHHHHHHHHHHHHHcCCCHHHH-------HHHHHHH-HHHH
Q 024016 157 LFGSVGK----IWRADEKL---FDAI---TGLSGSGPAYIFLAIEALADGGVAAGLPRELA-------LGLASQT-VLGA 218 (274)
Q Consensus 157 ll~~~g~----~~~~~e~~---~~~~---~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~-------~~~~~~~-~~~~ 218 (274)
+++.+|. ++.++... ++.+ ++++|++|++++..++. +.+.|++++.+ .+++.++ ..|.
T Consensus 167 l~~~lG~~~agv~~~~~~~~~~~~~~~s~~~l~G~lp~~ia~~~e~----l~~~Gl~~~~a~~e~~~~~~~~~~~~~~gg 242 (338)
T 1np3_A 167 YACGVGGGRTGIIETTFKDETETDLFGEQAVLCGGCVELVKAGFET----LVEAGYAPEMAYFECLHELKLIVDLMYEGG 242 (338)
T ss_dssp HHHHTTHHHHCEEECCHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH----HHHTTCCHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHcCCCccceEeechhcccchHHHHHHHHHhhhHHHHHHHHHHH----HHHcCCCHHHHHHHhhhHHHHHHHHHHhcC
Confidence 9999997 45565433 3444 35666688887665544 45789999887 6777777 4555
Q ss_pred HHHHHhcCCChHHHHHhcCCCC
Q 024016 219 ASMVTKSGKHPGQLKDDVASPG 240 (274)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~ 240 (274)
.+.++..+.+|.+|.+.+++|+
T Consensus 243 ~~~~r~a~s~p~~~~d~~~~~~ 264 (338)
T 1np3_A 243 IANMNYSISNNAEYGEYVTGPE 264 (338)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHhhhhcCCc
Confidence 3333666789999999998887
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.4e-25 Score=190.80 Aligned_cols=251 Identities=18% Similarity=0.189 Sum_probs=183.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccHHHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVKDV 87 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~~v 87 (274)
..|||+|||+|+||..++..|.+.|+ +|++| +|++++.+.+.+.|+....++.++++++|+||+|+| +..++++
T Consensus 29 ~~~~I~iIG~G~mG~~~a~~l~~~g~----~V~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v 103 (316)
T 2uyy_A 29 TDKKIGFLGLGLMGSGIVSNLLKMGH----TVTVW-NRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDL 103 (316)
T ss_dssp CSSCEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHHHH
T ss_pred CCCeEEEEcccHHHHHHHHHHHhCCC----EEEEE-eCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHH
Confidence 45899999999999999999999998 99999 999999998888888887788888889999999999 7889999
Q ss_pred HHHh---ccccCCCCEEEEecCCCC--HHHHHHhhC--CCceEEE-cCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhh
Q 024016 88 AMQI---RPLLSRKKLLVSVAAGVK--LKDLQEWTG--HSRFIRV-MPNTPSAVGEAATVMSLGGTATEEDGELIGKLFG 159 (274)
Q Consensus 88 ~~~i---~~~l~~~~~vis~~~g~~--~~~l~~~~~--~~~~~~~-~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~ 159 (274)
+.++ .+.+.++++||+++++.+ .+.+.+.++ +..++.. +++.+...+.|.+.++.+. +++..+.++++|+
T Consensus 104 ~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v~~p~~g~~~~~~~g~~~~~~~g--~~~~~~~v~~ll~ 181 (316)
T 2uyy_A 104 VLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAG--DRGLYEDCSSCFQ 181 (316)
T ss_dssp HHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEEEEE--CHHHHHHTHHHHH
T ss_pred HcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCccCChhHHhhCCEEEEeCC--CHHHHHHHHHHHH
Confidence 8764 367789999998866432 234555553 3344432 3444555566665444222 5788999999999
Q ss_pred hcCCe-EEcCccch-----hhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Q 024016 160 SVGKI-WRADEKLF-----DAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLK 233 (274)
Q Consensus 160 ~~g~~-~~~~e~~~-----~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (274)
.+|.. +++++... ...+++. ..++..+.|++.. +++.|++++++.+++..+..++..+... .+..+.
T Consensus 182 ~~g~~~~~~~~~~~~~~~K~~~n~~~---~~~~~~~~Ea~~l-a~~~G~~~~~~~~~~~~~~~~s~~~~~~---~~~~l~ 254 (316)
T 2uyy_A 182 AMGKTSFFLGEVGNAAKMMLIVNMVQ---GSFMATIAEGLTL-AQVTGQSQQTLLDILNQGQLASIFLDQK---CQNILQ 254 (316)
T ss_dssp HHEEEEEECSSTTHHHHHHHHHHHHH---HHHHHHHHHHHHH-HHHTTCCHHHHHHHHHHSTTCCHHHHHH---HHHHHH
T ss_pred HhcCCEEEeCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHH-HHHcCCCHHHHHHHHHcCCCCCHHHHHh---hHHhhc
Confidence 99965 66655221 1122221 1234455555554 7799999999999888776554444321 344555
Q ss_pred HhcCCCCchHHH-------HHHHHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024016 234 DDVASPGGTTIA-------GIHELEKSGFRGILMNAVVAAAKRSRELS 274 (274)
Q Consensus 234 ~~~~~~~g~t~~-------~l~~l~~~~~~~~~~~a~~~~~~r~~~~~ 274 (274)
++ ++|++.++. .++..++.|++..+.+++.+.++++++++
T Consensus 255 ~~-~~~g~~~~~~~kd~~~~~~~a~~~gv~~p~~~~v~~~~~~a~~~g 301 (316)
T 2uyy_A 255 GN-FKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRAKALD 301 (316)
T ss_dssp TC-CCCSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred CC-CCCCCcHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHhcC
Confidence 54 688888877 56667888999999999999999998864
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.5e-25 Score=188.81 Aligned_cols=248 Identities=16% Similarity=0.171 Sum_probs=180.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcc-cHHHHH-
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVKDVA- 88 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~-~~~~v~- 88 (274)
+||+|||+|+||.+|+++|.++|| +|++| ||++++.+.+.+.|+...+++.++++++|+||+|+|+. ++++++
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~G~----~V~~~-dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~ 76 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRAGF----DVTVW-NRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCF 76 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHTC----CEEEE-CSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHH
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC----eEEEE-cCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHc
Confidence 689999999999999999999999 99999 99999999999889988889999999999999999975 789998
Q ss_pred --HHhccccCCCCEEEEecCCCCHH---HHHHhhC--CCceEEEcC--CcHHhhcCCc-eEEecCCCCCHHHHHHHHHHh
Q 024016 89 --MQIRPLLSRKKLLVSVAAGVKLK---DLQEWTG--HSRFIRVMP--NTPSAVGEAA-TVMSLGGTATEEDGELIGKLF 158 (274)
Q Consensus 89 --~~i~~~l~~~~~vis~~~g~~~~---~l~~~~~--~~~~~~~~p--~~~~~~~~g~-~~i~~~~~~~~~~~~~v~~ll 158 (274)
.++.+.+++++++|++++ ..+. .+.+.+. +..++.. | ..|.....|. ++++.+ +++.+++++++|
T Consensus 77 ~~~~l~~~l~~g~~vv~~st-~~~~~~~~~~~~~~~~g~~~~~~-pv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~ll 151 (287)
T 3pdu_A 77 GANGVLEGIGGGRGYIDMST-VDDETSTAIGAAVTARGGRFLEA-PVSGTKKPAEDGTLIILAAG---DQSLFTDAGPAF 151 (287)
T ss_dssp STTCGGGTCCTTCEEEECSC-CCHHHHHHHHHHHHHTTCEEEEC-CEECCHHHHHHTCEEEEEEE---CHHHHHHTHHHH
T ss_pred CchhhhhcccCCCEEEECCC-CCHHHHHHHHHHHHHcCCEEEEC-CccCCHHHHhcCCEEEEEeC---CHHHHHHHHHHH
Confidence 788888889999998755 4443 3333332 2334432 3 2344445555 344443 688999999999
Q ss_pred hhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q 024016 159 GSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKD 234 (274)
Q Consensus 159 ~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (274)
+.+|.. +++++........+. .+.+.+..+..+.|+ +++.|++++++.+++..+...+. +.... ...+.+
T Consensus 152 ~~~g~~~~~~g~~g~~~~~Kl~--~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~-~~~~~---~~~~~~ 225 (287)
T 3pdu_A 152 AALGKKCLHLGEVGQGARMKLV--VNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDAGAMANP-MFKGK---GQMLLS 225 (287)
T ss_dssp HHHEEEEEECSSTTHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCH-HHHHH---HHHHHH
T ss_pred HHhCCCEEEcCCCChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccccCh-HHHhh---cccccc
Confidence 999975 777764444444433 244455555556665 56899999999999887643332 22211 234555
Q ss_pred hcCCCCchHHHHH-------HHHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024016 235 DVASPGGTTIAGI-------HELEKSGFRGILMNAVVAAAKRSRELS 274 (274)
Q Consensus 235 ~~~~~~g~t~~~l-------~~l~~~~~~~~~~~a~~~~~~r~~~~~ 274 (274)
..+.|++...... +..++.|++..+.+++.+.|+++.+.+
T Consensus 226 ~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 272 (287)
T 3pdu_A 226 GEFPTSFPLKHMQKDLRLAVELGDRLGQPLHGAATANESFKRARAAG 272 (287)
T ss_dssp TCCCCSSBHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcC
Confidence 5568888766543 344666888889999999999987753
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-25 Score=192.82 Aligned_cols=251 Identities=16% Similarity=0.168 Sum_probs=184.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcc-cHHHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVKDV 87 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~-~~~~v 87 (274)
++|||+|||+|+||..++.+|.+.|+ +|++| + ++++.+.+.+.|+....++.++++++|+||+|+|.. +++++
T Consensus 2 ~~m~i~iiG~G~~G~~~a~~l~~~g~----~V~~~-~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v 75 (295)
T 1yb4_A 2 NAMKLGFIGLGIMGSPMAINLARAGH----QLHVT-T-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDV 75 (295)
T ss_dssp --CEEEECCCSTTHHHHHHHHHHTTC----EEEEC-C-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHH
T ss_pred CCCEEEEEccCHHHHHHHHHHHhCCC----EEEEE-c-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHH
Confidence 34799999999999999999999999 99999 9 888888888778877778888889999999999755 48888
Q ss_pred HH---HhccccCCCCEEEEecCCCC--HHHHHHhhCCCceEEEc--CC--cHHhhcCCceEEecCCCCCHHHHHHHHHHh
Q 024016 88 AM---QIRPLLSRKKLLVSVAAGVK--LKDLQEWTGHSRFIRVM--PN--TPSAVGEAATVMSLGGTATEEDGELIGKLF 158 (274)
Q Consensus 88 ~~---~i~~~l~~~~~vis~~~g~~--~~~l~~~~~~~~~~~~~--p~--~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll 158 (274)
+. ++.+.++++++||+++++.+ .+.+.+.++. ..++++ |. .|.....|...++.+. +++..+.++++|
T Consensus 76 ~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~-~g~~~~~~p~~~~~~~a~~g~~~~~~~~--~~~~~~~~~~ll 152 (295)
T 1yb4_A 76 LFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNE-MGADYLDAPVSGGEIGAREGTLSIMVGG--EQKVFDRVKPLF 152 (295)
T ss_dssp HHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHT-TTEEEEECCEESHHHHHHHTCEEEEEES--CHHHHHHHHHHH
T ss_pred HhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHH-cCCeEEEccCCCCHHHHHcCCeEEEECC--CHHHHHHHHHHH
Confidence 87 78788889999998877643 3456555542 122222 22 1222234553333332 688899999999
Q ss_pred hhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q 024016 159 GSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKD 234 (274)
Q Consensus 159 ~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (274)
+.+|.. +++++........+.. +.+.+.+...+.|+ +++.|++++++.+++..+..++..+.. .+..+.+
T Consensus 153 ~~~g~~~~~~~~~~~~~~~Kl~~--n~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~----~~~~~~~ 226 (295)
T 1yb4_A 153 DILGKNITLVGGNGDGQTCKVAN--QIIVALNIEAVSEALVFASKAGADPVRVRQALMGGFASSRILEV----HGERMIN 226 (295)
T ss_dssp HHHEEEEEEEESTTHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTSSSSCBHHHHH----HHHHHHT
T ss_pred HHhcCCEEEeCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHH----hhHHHhc
Confidence 999975 6666655555544432 34445555666666 779999999988888776644432221 3456677
Q ss_pred hcCCCCchHHH-------HHHHHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024016 235 DVASPGGTTIA-------GIHELEKSGFRGILMNAVVAAAKRSRELS 274 (274)
Q Consensus 235 ~~~~~~g~t~~-------~l~~l~~~~~~~~~~~a~~~~~~r~~~~~ 274 (274)
+.++|++.++. .++..++.|++..+.+++.+.++|+.+++
T Consensus 227 ~~~~~g~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g 273 (295)
T 1yb4_A 227 RTFEPGFKIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANG 273 (295)
T ss_dssp TCCCCSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcC
Confidence 77899999987 78888999999999999999999998764
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.8e-25 Score=190.25 Aligned_cols=250 Identities=18% Similarity=0.226 Sum_probs=183.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccHHHHH-
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVKDVA- 88 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~~v~- 88 (274)
|||+|||+|.||..++..|.+.|+ +|++| +|++++.+.+.+.|+....++.++++++|+||+|+| +.++++++
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~g~----~V~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~ 80 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKAGY----SLVVS-DRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVAL 80 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHH
T ss_pred ceEEEECchHHHHHHHHHHHhCCC----EEEEE-eCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHh
Confidence 699999999999999999999998 99999 999999998888888888888888889999999999 66788888
Q ss_pred --HHhccccCCCCEEEEecCCCC--HHHHHHhhC--CCceEEE--cCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhh
Q 024016 89 --MQIRPLLSRKKLLVSVAAGVK--LKDLQEWTG--HSRFIRV--MPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGS 160 (274)
Q Consensus 89 --~~i~~~l~~~~~vis~~~g~~--~~~l~~~~~--~~~~~~~--~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~ 160 (274)
+++.+.++++++||+++++.+ .+.+.+.++ +..++.. +++.+.....+.++++.+ +++..+.++++|+.
T Consensus 81 ~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ll~~ 157 (299)
T 1vpd_A 81 GENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGG---DKAIFDKYYDLMKA 157 (299)
T ss_dssp STTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEEES---CHHHHHHHHHHHHT
T ss_pred CcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEecCCCCHhHHhcCCEEEEeCC---CHHHHHHHHHHHHH
Confidence 677788889999999877764 346666554 2334332 233343333444555544 68889999999999
Q ss_pred cCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhc
Q 024016 161 VGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDV 236 (274)
Q Consensus 161 ~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (274)
+|.. ++.++........+. .+.+.+.+...+.|+ +++.|++++++.+++..+..++..+.. ..+..+.+.
T Consensus 158 ~g~~~~~~~~~~~~~~~Kl~--~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~---~~~~~l~~~- 231 (299)
T 1vpd_A 158 MAGSVVHTGDIGAGNVTKLA--NQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDA---KAPMVMDRN- 231 (299)
T ss_dssp TEEEEEEEESTTHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHH---HHHHHHTTC-
T ss_pred HcCCeEEeCCcCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCCHHHHH---hhhHhhcCC-
Confidence 9965 666665555555543 245555666677776 679999999998888776544433221 134445444
Q ss_pred CCCCchHHHH-------HHHHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024016 237 ASPGGTTIAG-------IHELEKSGFRGILMNAVVAAAKRSRELS 274 (274)
Q Consensus 237 ~~~~g~t~~~-------l~~l~~~~~~~~~~~a~~~~~~r~~~~~ 274 (274)
++|++..+.. ++..++.++...+.+++.+.++++.+.+
T Consensus 232 ~~~g~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~g 276 (299)
T 1vpd_A 232 FKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADG 276 (299)
T ss_dssp CCCSSBHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCCCChHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcC
Confidence 4777655442 3445667888889999999999888753
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-25 Score=188.37 Aligned_cols=231 Identities=14% Similarity=0.133 Sum_probs=161.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcE-EEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCcccHHHH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v-~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v 87 (274)
+|||+|||+|+||.+|+++|.++ + +| .+| +|++++.+.+.+ .|. .+.++.++++++|+||+|||++.+.++
T Consensus 2 ~m~I~iIG~G~mG~~la~~l~~~-~----~v~~v~-~~~~~~~~~~~~~~g~-~~~~~~~~~~~~DvVilav~~~~~~~v 74 (276)
T 2i76_A 2 SLVLNFVGTGTLTRFFLECLKDR-Y----EIGYIL-SRSIDRARNLAEVYGG-KAATLEKHPELNGVVFVIVPDRYIKTV 74 (276)
T ss_dssp --CCEEESCCHHHHHHHHTTC---------CCCEE-CSSHHHHHHHHHHTCC-CCCSSCCCCC---CEEECSCTTTHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHc-C----cEEEEE-eCCHHHHHHHHHHcCC-ccCCHHHHHhcCCEEEEeCChHHHHHH
Confidence 36899999999999999999888 7 88 599 999999888875 576 666777888899999999999999999
Q ss_pred HHHhccccCCCCEEEEecCCCCHHHHHHhhCC-CceEEEcCCcHHhhc--CCceEEecCCCCCHHHHHHHHHHhhhcCC-
Q 024016 88 AMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGH-SRFIRVMPNTPSAVG--EAATVMSLGGTATEEDGELIGKLFGSVGK- 163 (274)
Q Consensus 88 ~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~~-~~~~~~~p~~~~~~~--~g~~~i~~~~~~~~~~~~~v~~ll~~~g~- 163 (274)
+.++. .++++||+++++++.+.+++.... ......+|+.|.... .+......+ +++.++.++++|+.+|.
T Consensus 75 ~~~l~---~~~~ivi~~s~~~~~~~l~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~lG~~ 148 (276)
T 2i76_A 75 ANHLN---LGDAVLVHCSGFLSSEIFKKSGRASIHPNFSFSSLEKALEMKDQIVFGLEG---DERGLPIVKKIAEEISGK 148 (276)
T ss_dssp HTTTC---CSSCCEEECCSSSCGGGGCSSSEEEEEECSCC--CTTGGGCGGGCCEEECC---CTTTHHHHHHHHHHHCSC
T ss_pred HHHhc---cCCCEEEECCCCCcHHHHHHhhccccchhhhcCCCchhHHHhCCCeEEEEe---ChHHHHHHHHHHHHhCCC
Confidence 98875 578899998888887766543210 011112445444433 344343333 45678999999999995
Q ss_pred eEEcCccc---hhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCC
Q 024016 164 IWRADEKL---FDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPG 240 (274)
Q Consensus 164 ~~~~~e~~---~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (274)
+++++++. ++..++++++.+.++...+ .+.+.+.|++++++. +.+++.++..++.+.+ | .+.+++|.
T Consensus 149 ~~~v~~~~~~~~~~~~~l~~n~~~~~~~~a---~~~~~~~Gl~~~~a~--~~~l~~~~~~~~~~~g--p---~~~~tgP~ 218 (276)
T 2i76_A 149 YFVIPSEKKKAYHLAAVIASNFPVALAYLS---KRIYTLLGLDEPELL--IHTLMKGVADNIKKMR--V---ECSLTGPV 218 (276)
T ss_dssp EEECCGGGHHHHHHHHHHHHTTHHHHHHHH---HHHHHTTTCSCHHHH--HHHHHHHHHHHHHHSC--G---GGGCCSHH
T ss_pred EEEECHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHcCCChHHHH--HHHHHHHHHHHHHhcC--h---HhhCCCCc
Confidence 68888764 5666677776665543322 244677999998764 7788888888887765 4 77889998
Q ss_pred -----chHHHHHHHHHh--CC--HHHHHHHHH
Q 024016 241 -----GTTIAGIHELEK--SG--FRGILMNAV 263 (274)
Q Consensus 241 -----g~t~~~l~~l~~--~~--~~~~~~~a~ 263 (274)
++++.+++.|++ .+ +...+.+++
T Consensus 219 ~r~D~~t~~~~l~~l~~~~~~~~~y~~l~~~~ 250 (276)
T 2i76_A 219 KRGDWQVVEEERREYEKIFGNTVLYDEIVKLL 250 (276)
T ss_dssp HHTCHHHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhccCccHHHHHHHHHHH
Confidence 899999999987 35 444444443
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-24 Score=183.26 Aligned_cols=247 Identities=17% Similarity=0.200 Sum_probs=178.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccHHHHH-
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVKDVA- 88 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~~v~- 88 (274)
|||+|||+|+||.+|+.+|.++|| +|++| ||++++.+.+.+.|+...+++.++++++|+||+||| ++.+++++
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~----~V~~~-dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~ 76 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGC----SVTIW-NRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCF 76 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCC----eEEEE-cCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHc
Confidence 699999999999999999999999 99999 999999999998999988899999999999999999 67899999
Q ss_pred --HHhccccCCCCEEEEecCCCCHHH---HHHhhC--CCceEEEcC--CcHHhhcCCc-eEEecCCCCCHHHHHHHHHHh
Q 024016 89 --MQIRPLLSRKKLLVSVAAGVKLKD---LQEWTG--HSRFIRVMP--NTPSAVGEAA-TVMSLGGTATEEDGELIGKLF 158 (274)
Q Consensus 89 --~~i~~~l~~~~~vis~~~g~~~~~---l~~~~~--~~~~~~~~p--~~~~~~~~g~-~~i~~~~~~~~~~~~~v~~ll 158 (274)
.++.+.++++++||++ +++++.. +.+.+. +..++. +| ..|.....|. ..++.+ +++.++.++++|
T Consensus 77 ~~~~l~~~l~~~~~vi~~-st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~ll 151 (287)
T 3pef_A 77 GKHGVLEGIGEGRGYVDM-STVDPATSQRIGVAVVAKGGRFLE-APVSGSKKPAEDGTLIILAAG---DRNLYDEAMPGF 151 (287)
T ss_dssp STTCHHHHCCTTCEEEEC-SCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHHHHHHTCEEEEEEE---CHHHHHHHHHHH
T ss_pred CcchHhhcCCCCCEEEeC-CCCCHHHHHHHHHHHHHhCCEEEE-CCCcCCHHHHhcCCEEEEEeC---CHHHHHHHHHHH
Confidence 7888888999999987 4455443 333332 233433 34 2233334454 344443 688999999999
Q ss_pred hhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q 024016 159 GSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKD 234 (274)
Q Consensus 159 ~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (274)
+.+|.. +++++........+.. +.+.+..+..+.|+ +++.|++++++.+++..+...+. +... ....+.+
T Consensus 152 ~~~g~~~~~~g~~g~~~~~Kl~~--N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~~s~-~~~~---~~~~~~~ 225 (287)
T 3pef_A 152 EKMGKKIIHLGDVGKGAEMKLVV--NMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGAMANP-MFAL---KGGLIRD 225 (287)
T ss_dssp HHHEEEEEECSSTTHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCH-HHHH---HHHHHHT
T ss_pred HHhCCCeEEeCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccH-HHHH---Hhhhhhc
Confidence 999964 7787766665555543 34444444455554 56899999999999886543322 2221 1234445
Q ss_pred hcCCCCchHHHHHH-------HHHhCCHHHHHHHHHHHHHHHHhhc
Q 024016 235 DVASPGGTTIAGIH-------ELEKSGFRGILMNAVVAAAKRSREL 273 (274)
Q Consensus 235 ~~~~~~g~t~~~l~-------~l~~~~~~~~~~~a~~~~~~r~~~~ 273 (274)
..+.|++......+ ..++.|+...+.+++.+.|+++.+.
T Consensus 226 ~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~ 271 (287)
T 3pef_A 226 RNFAPAFPLKHMQKDLRLAVALGDRVGQPLVASAAANELFKGARAA 271 (287)
T ss_dssp TCCCCSSBHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHc
Confidence 55678876655443 3455578888889999999988764
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.4e-25 Score=188.80 Aligned_cols=246 Identities=15% Similarity=0.117 Sum_probs=181.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcc-cHHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVKDVAM 89 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~-~~~~v~~ 89 (274)
|||+|||+|+||..++..|.+ |+ +|++| +|++++.+.+.+.|+...+ +.++++++|+||+|+|+. .++++++
T Consensus 2 ~~i~iiG~G~~G~~~a~~l~~-g~----~V~~~-~~~~~~~~~~~~~g~~~~~-~~~~~~~~D~vi~~v~~~~~~~~v~~ 74 (289)
T 2cvz_A 2 EKVAFIGLGAMGYPMAGHLAR-RF----PTLVW-NRTFEKALRHQEEFGSEAV-PLERVAEARVIFTCLPTTREVYEVAE 74 (289)
T ss_dssp CCEEEECCSTTHHHHHHHHHT-TS----CEEEE-CSSTHHHHHHHHHHCCEEC-CGGGGGGCSEEEECCSSHHHHHHHHH
T ss_pred CeEEEEcccHHHHHHHHHHhC-CC----eEEEE-eCCHHHHHHHHHCCCcccC-HHHHHhCCCEEEEeCCChHHHHHHHH
Confidence 689999999999999999999 99 99999 9999999888877776655 778888999999999966 4889998
Q ss_pred HhccccCCCCEEEEecCCCC--HHHHHHhhC--CCceEEEcCC--cHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCC
Q 024016 90 QIRPLLSRKKLLVSVAAGVK--LKDLQEWTG--HSRFIRVMPN--TPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGK 163 (274)
Q Consensus 90 ~i~~~l~~~~~vis~~~g~~--~~~l~~~~~--~~~~~~~~p~--~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~ 163 (274)
++.+.++++++||+++++.. .+.+.+.++ +..+++. |. .+.....|...++.+ .+++..+.++++| .+|.
T Consensus 75 ~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~-p~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~ll-~~g~ 150 (289)
T 2cvz_A 75 ALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDA-PVSGGTSGAEAGTLTVMLG--GPEEAVERVRPFL-AYAK 150 (289)
T ss_dssp HHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEEC-CEESHHHHHHHTCEEEEEE--SCHHHHHHHGGGC-TTEE
T ss_pred HHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEe-cCCCChhHHhhCCeEEEEC--CCHHHHHHHHHHH-hhcC
Confidence 88888889999998765432 245555554 2345544 53 244444555333333 2688899999999 9996
Q ss_pred e-EEcCccchhhHHHhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCh-HHHHHhcCC
Q 024016 164 I-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHP-GQLKDDVAS 238 (274)
Q Consensus 164 ~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 238 (274)
. +++++....... ..+.|.+.+.+...+.|+ +++.|++++++.+++..+..++ .++.. ..+ ..+.+++ +
T Consensus 151 ~~~~~~~~~~~~~~--k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s-~~~~~--~~~~~~l~~~~-~ 224 (289)
T 2cvz_A 151 KVVHVGPVGAGHAV--KAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRS-NATEN--LIPQRVLTRAF-P 224 (289)
T ss_dssp EEEEEESTTHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCB-HHHHH--THHHHTTTSCC-C
T ss_pred CeEEcCCCcHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHccCCCC-HHHHH--hccchhhcCCC-C
Confidence 4 666654333333 334566766777777777 6799999999988887766544 33322 234 3455555 7
Q ss_pred CCchHHH-------HHHHHHhCCHHHHHHHHHHHHHHHHhhc
Q 024016 239 PGGTTIA-------GIHELEKSGFRGILMNAVVAAAKRSREL 273 (274)
Q Consensus 239 ~~g~t~~-------~l~~l~~~~~~~~~~~a~~~~~~r~~~~ 273 (274)
||+.++. .++..++.|++..+.+++.+.++|+.++
T Consensus 225 ~g~~~~~~~kd~~~~~~~a~~~gv~~p~~~~v~~~~~~a~~~ 266 (289)
T 2cvz_A 225 KTFALGLLVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRE 266 (289)
T ss_dssp CSSBHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHc
Confidence 8887764 4566778899999999999999999875
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.1e-24 Score=185.54 Aligned_cols=248 Identities=15% Similarity=0.199 Sum_probs=177.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCc-ccHHHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVVKDV 87 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~-~~~~~v 87 (274)
++|||+|||+|.||.+|+++|.++|+ +|++| ||++++.+.+.+.|+...+++.++++++|+||+|||+ ..++++
T Consensus 30 ~~~~I~iIG~G~mG~~~a~~l~~~G~----~V~~~-dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v 104 (320)
T 4dll_A 30 YARKITFLGTGSMGLPMARRLCEAGY----ALQVW-NRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDV 104 (320)
T ss_dssp CCSEEEEECCTTTHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHH
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCC----eEEEE-cCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHH
Confidence 45799999999999999999999999 99999 9999999999888998888999999999999999994 678888
Q ss_pred HH--HhccccCCCCEEEEecCCCCHH---HHHHhhC--CCceEEEcCC--cHHhhcCCc-eEEecCCCCCHHHHHHHHHH
Q 024016 88 AM--QIRPLLSRKKLLVSVAAGVKLK---DLQEWTG--HSRFIRVMPN--TPSAVGEAA-TVMSLGGTATEEDGELIGKL 157 (274)
Q Consensus 88 ~~--~i~~~l~~~~~vis~~~g~~~~---~l~~~~~--~~~~~~~~p~--~~~~~~~g~-~~i~~~~~~~~~~~~~v~~l 157 (274)
+. ++.+.++++++||++++ ..+. .+.+.+. +..++.. |. .+.....|. ++++.+ +++.++.++++
T Consensus 105 ~~~~~~~~~l~~~~~vi~~st-~~~~~~~~~~~~~~~~g~~~~~~-pv~g~~~~a~~g~l~i~~gg---~~~~~~~~~~l 179 (320)
T 4dll_A 105 LFAQGVAAAMKPGSLFLDMAS-ITPREARDHAARLGALGIAHLDT-PVSGGTVGAEQGTLVIMAGG---KPADFERSLPL 179 (320)
T ss_dssp HTTTCHHHHCCTTCEEEECSC-CCHHHHHHHHHHHHHTTCEEEEC-CEECHHHHHHHTCEEEEEES---CHHHHHHHHHH
T ss_pred HcchhHHhhCCCCCEEEecCC-CCHHHHHHHHHHHHHcCCEEEeC-CCcCCHhHHhcCCeeEEeCC---CHHHHHHHHHH
Confidence 87 78888889999998755 4443 3333332 2334432 32 233333454 344444 68899999999
Q ss_pred hhhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Q 024016 158 FGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLK 233 (274)
Q Consensus 158 l~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (274)
|+.+ .. +++++......+.++ .+.+.+..+..+.|+ +++.|++++++.+++..+...+. ++.. ....+.
T Consensus 180 l~~~-~~~~~~g~~g~a~~~Kl~--~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~-~~~~---~~~~~l 252 (320)
T 4dll_A 180 LKVF-GRATHVGPHGSGQLTKLA--NQMIVGITIGAVAEALLFATKGGADMAKVKEAITGGFADSR-VLQL---HGQRMV 252 (320)
T ss_dssp HHHH-EEEEEEESTTHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHTTSTTCBH-HHHT---HHHHHH
T ss_pred HHhc-CCEEEeCCccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcccccCH-HHHH---hhhhhc
Confidence 9999 64 677664444444443 244555555555554 56899999999998876643322 2221 122444
Q ss_pred HhcCCCCchHHHHHHH-------HHhCCHHHHHHHHHHHHHHHHhhc
Q 024016 234 DDVASPGGTTIAGIHE-------LEKSGFRGILMNAVVAAAKRSREL 273 (274)
Q Consensus 234 ~~~~~~~g~t~~~l~~-------l~~~~~~~~~~~a~~~~~~r~~~~ 273 (274)
+..+.|++......+. .++.|++..+.+++.+.|+++.+.
T Consensus 253 ~~~~~~gf~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~ 299 (320)
T 4dll_A 253 ERDFAPRARLSIQLKDMRNALATAQEIGFDAPITGLFEQLYAEGVEH 299 (320)
T ss_dssp TTCCCCSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred cCCCCCcccHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhc
Confidence 5556788876555444 366788888999999999988764
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-24 Score=186.42 Aligned_cols=251 Identities=16% Similarity=0.195 Sum_probs=181.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccHHHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVKDV 87 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~~v 87 (274)
++|||+|||+|+||..++.+|.+.|+ +|++| +|++++.+.+.+.|+...+++.++++++|+||+|+| +.+++++
T Consensus 3 ~~~~i~iiG~G~~G~~~a~~l~~~g~----~V~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v 77 (301)
T 3cky_A 3 KSIKIGFIGLGAMGKPMAINLLKEGV----TVYAF-DLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETV 77 (301)
T ss_dssp -CCEEEEECCCTTHHHHHHHHHHTTC----EEEEE-CSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHH
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHH
Confidence 45799999999999999999999999 99999 999999988887888887888888889999999996 5668888
Q ss_pred HH---HhccccCCCCEEEEecCCC--CHHHHHHhhC--CCceEEEcCCc--HHhhcCCc-eEEecCCCCCHHHHHHHHHH
Q 024016 88 AM---QIRPLLSRKKLLVSVAAGV--KLKDLQEWTG--HSRFIRVMPNT--PSAVGEAA-TVMSLGGTATEEDGELIGKL 157 (274)
Q Consensus 88 ~~---~i~~~l~~~~~vis~~~g~--~~~~l~~~~~--~~~~~~~~p~~--~~~~~~g~-~~i~~~~~~~~~~~~~v~~l 157 (274)
+. ++.+.++++++||+++++. ..+.+.+.++ +..++. .|.. +.....|. +.++.+ +++.++.++++
T Consensus 78 ~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~~-~p~~~~~~~a~~g~~~~~~~g---~~~~~~~v~~l 153 (301)
T 3cky_A 78 MNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVD-APVSGGTKGAEAGTLTIMVGA---SEAVFEKIQPV 153 (301)
T ss_dssp HHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEEE-CCEESHHHHHHHTCEEEEEES---CHHHHHHHHHH
T ss_pred HcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEE-ccCCCCHHHHHcCCeEEEECC---CHHHHHHHHHH
Confidence 85 7777888999999998877 3456666554 233443 2322 11223354 444443 68889999999
Q ss_pred hhhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCh-HHH
Q 024016 158 FGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHP-GQL 232 (274)
Q Consensus 158 l~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 232 (274)
|+.+|.. +++++........+.. +.+...+...+.|+ +++.|++++++.+++..+..++..+... .+ ..+
T Consensus 154 l~~~g~~~~~~~~~g~~~~~Kl~~--N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l 228 (301)
T 3cky_A 154 LSVIGKDIYHVGDTGAGDAVKIVN--NLLLGCNMASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAK---MEKFIM 228 (301)
T ss_dssp HHHHEEEEEEEESTTHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCBHHHHHH---CCCCCC
T ss_pred HHHhcCCEEEeCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHHh---hhhhhh
Confidence 9999965 5566544444444332 33444444455555 6789999999999888776555444321 22 334
Q ss_pred HHhcCCCCchHHHH-------HHHHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024016 233 KDDVASPGGTTIAG-------IHELEKSGFRGILMNAVVAAAKRSRELS 274 (274)
Q Consensus 233 ~~~~~~~~g~t~~~-------l~~l~~~~~~~~~~~a~~~~~~r~~~~~ 274 (274)
.+++ +|++.++.. ++..++.|++..+.+++.+.++++.+.+
T Consensus 229 ~~~~-~~g~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~g 276 (301)
T 3cky_A 229 SGDF-AGGFAMDLQHKDLGLALEAGKEGNVPLPMTAMATQIFEGGRAMG 276 (301)
T ss_dssp TCCC-SSSSBHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTT
T ss_pred cCCC-CCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHhcC
Confidence 4444 677766643 4666778999999999999999998764
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.3e-24 Score=181.39 Aligned_cols=206 Identities=15% Similarity=0.213 Sum_probs=160.3
Q ss_pred CCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCc-EEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCc
Q 024016 4 FPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDR-ICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKP 81 (274)
Q Consensus 4 ~~~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~-v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~ 81 (274)
|+.....|||+|||+|+||..++..|.+.|+ + |.+| +|++++.+.+.+ .|+....++.++++++|+||+|+|+
T Consensus 4 m~~~~~~m~i~iiG~G~mG~~~a~~l~~~g~----~~v~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~ 78 (266)
T 3d1l_A 4 MKRSIEDTPIVLIGAGNLATNLAKALYRKGF----RIVQVY-SRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKD 78 (266)
T ss_dssp ---CGGGCCEEEECCSHHHHHHHHHHHHHTC----CEEEEE-CSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCH
T ss_pred hhcCCCCCeEEEEcCCHHHHHHHHHHHHCCC----eEEEEE-eCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCH
Confidence 4555556899999999999999999999998 7 8999 999999988877 4888878888888999999999999
Q ss_pred ccHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhCCCceEEEcCCcH-----HhhcCCceEEecCCCCCHHHHHHHHH
Q 024016 82 QVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNTP-----SAVGEAATVMSLGGTATEEDGELIGK 156 (274)
Q Consensus 82 ~~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~~~~~~~~~p~~~-----~~~~~g~~~i~~~~~~~~~~~~~v~~ 156 (274)
+.+.+++.++.+.+++++++|+++++.+.+.+++.++... ..+|..| .....+...+..+ .+++..+.+++
T Consensus 79 ~~~~~v~~~l~~~~~~~~ivv~~s~~~~~~~l~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~v~~--~~~~~~~~~~~ 154 (266)
T 3d1l_A 79 SAFAELLQGIVEGKREEALMVHTAGSIPMNVWEGHVPHYG--VFYPMQTFSKQREVDFKEIPFFIEA--SSTEDAAFLKA 154 (266)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEECCTTSCGGGSTTTCSSEE--EEEECCCC---CCCCCTTCCEEEEE--SSHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCcEEEECCCCCchHHHHHHHHhcc--CcCCceecCCCchhhcCCCeEEEec--CCHHHHHHHHH
Confidence 9999999999888889999999999998877766655211 1233322 1111223333322 36888999999
Q ss_pred HhhhcCC-eEEcCccc---hhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q 024016 157 LFGSVGK-IWRADEKL---FDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASM 221 (274)
Q Consensus 157 ll~~~g~-~~~~~e~~---~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~ 221 (274)
+|+.+|. ++++++.. +|..++++++.++++..+.+++. .+.|++++.+.+++.+++.++.++
T Consensus 155 l~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~eal~---~~~Gl~~~~~~~l~~~~~~~~~~~ 220 (266)
T 3d1l_A 155 IASTLSNRVYDADSEQRKSLHLAAVFTCNFTNHMYALAAELL---KKYNLPFDVMLPLIDETARKVHEL 220 (266)
T ss_dssp HHHTTCSCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHTTCCGGGGHHHHHHHHHHHHHS
T ss_pred HHHhcCCcEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCCCHHHHHHHHHHHHHHHHhc
Confidence 9999995 57788664 78888888877777777777653 589999999999999999887654
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.4e-24 Score=182.91 Aligned_cols=247 Identities=17% Similarity=0.164 Sum_probs=173.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC--HHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN--LKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~--~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~ 86 (274)
++|||+|||+|+||.+|+++|.++|+ .+|++| ||+ +++.+.+.+.|+...+++.++++++|+||+|||++...+
T Consensus 23 ~~~~I~iIG~G~mG~~~A~~L~~~G~---~~V~~~-dr~~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~ 98 (312)
T 3qsg_A 23 NAMKLGFIGFGEAASAIASGLRQAGA---IDMAAY-DAASAESWRPRAEELGVSCKASVAEVAGECDVIFSLVTAQAALE 98 (312)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHHSC---CEEEEE-CSSCHHHHHHHHHHTTCEECSCHHHHHHHCSEEEECSCTTTHHH
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCC---CeEEEE-cCCCCHHHHHHHHHCCCEEeCCHHHHHhcCCEEEEecCchhHHH
Confidence 35799999999999999999999996 379999 997 578888888899888899999999999999999999888
Q ss_pred HHHHhccccCCCCEEEEecCCCCHH---HHHHhhC----CCceEEE--cCCcHHhhcCCceEEecCCCCCHHHHHHHHHH
Q 024016 87 VAMQIRPLLSRKKLLVSVAAGVKLK---DLQEWTG----HSRFIRV--MPNTPSAVGEAATVMSLGGTATEEDGELIGKL 157 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~~g~~~~---~l~~~~~----~~~~~~~--~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~l 157 (274)
++.++.+.++++++||++++ +.+. .+.+.+. +..++.. +...+.. ....++++.++ ++ +.++++
T Consensus 99 ~~~~l~~~l~~~~ivvd~st-~~~~~~~~~~~~~~~~~~g~~~vd~pv~g~~~~~-~g~l~i~vgg~---~~--~~~~~l 171 (312)
T 3qsg_A 99 VAQQAGPHLCEGALYADFTS-CSPAVKRAIGDVISRHRPSAQYAAVAVMSAVKPH-GHRVPLVVDGD---GA--RRFQAA 171 (312)
T ss_dssp HHHHHGGGCCTTCEEEECCC-CCHHHHHHHHHHHHHHCTTCEEEEEEECSCSTTT-GGGSEEEEEST---TH--HHHHHH
T ss_pred HHHhhHhhcCCCCEEEEcCC-CCHHHHHHHHHHHHhhcCCCeEEeccccCCchhh-cCCEEEEecCC---hH--HHHHHH
Confidence 99999999999999998754 4433 2333222 2333332 2222222 22345566553 23 889999
Q ss_pred hhhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHH---HHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Q 024016 158 FGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALAD---GGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLK 233 (274)
Q Consensus 158 l~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e---~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (274)
|+.+|.. +++++. ......+..+.+.++...+..+.| .+++.|+++ +..+.+..+. ++. .+.. ....+.
T Consensus 172 l~~~g~~~~~~g~~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~-~~~~~l~~~~-~~~-~~~~---~~~~~~ 244 (312)
T 3qsg_A 172 FTLYGCRIEVLDGE-VGGAALLKMCRSAVLKGLEALFLEALAAAEKMGLAD-RVLASLDASF-PEH-HLRD---LALYLV 244 (312)
T ss_dssp HHTTTCEEEECCSS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHH-HHHHHHHHHS-GGG-THHH---HHHHHH
T ss_pred HHHhCCCeEEcCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH-HHHHHHHhcC-Cch-hHHH---hhhHhh
Confidence 9999975 667652 455555555667777665666666 467899998 4566666554 221 1111 123344
Q ss_pred HhcCCCCch----HHHHHHHHHhCCHHHHHHHHHHHHHHHHhhc
Q 024016 234 DDVASPGGT----TIAGIHELEKSGFRGILMNAVVAAAKRSREL 273 (274)
Q Consensus 234 ~~~~~~~g~----t~~~l~~l~~~~~~~~~~~a~~~~~~r~~~~ 273 (274)
+..+.|++. ....++..++.|+...+.+++.+.|+++.+.
T Consensus 245 ~~~~~~g~~~~KDl~~~~~~a~~~g~~~pl~~~~~~~~~~~~~~ 288 (312)
T 3qsg_A 245 ERNLEHADRRAHELGEVAATLCSVGVEPLVAEAGYRRLTRVAQV 288 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCcccchHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhc
Confidence 444567665 3445566677899999999999999998775
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.92 E-value=4e-24 Score=183.63 Aligned_cols=244 Identities=14% Similarity=0.099 Sum_probs=171.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccHHHHH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVKDVA 88 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~~v~ 88 (274)
++||+|||+|.||.+|+++|.++|| +|++| ||++++.+.+.+.|+..++++.++++ +|+||+||| +.++++++
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G~----~V~~~-dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~ 88 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWPG----GVTVY-DIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVV 88 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTSTT----CEEEE-CSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHH
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHH
Confidence 5799999999999999999999999 99999 99999999999999998889999998 999999999 56789999
Q ss_pred HHhccccCCCCEEEEecCCCCHH---HHHHhhC--CCceEEEcC--CcHHhhcCCce-EEecCCCCCHHHHHHHHHHhhh
Q 024016 89 MQIRPLLSRKKLLVSVAAGVKLK---DLQEWTG--HSRFIRVMP--NTPSAVGEAAT-VMSLGGTATEEDGELIGKLFGS 160 (274)
Q Consensus 89 ~~i~~~l~~~~~vis~~~g~~~~---~l~~~~~--~~~~~~~~p--~~~~~~~~g~~-~i~~~~~~~~~~~~~v~~ll~~ 160 (274)
.++.+.++++++||++++ +.+. .+.+.+. +..++. .| ..|.....|.. .++.+ +++.+++++++|+.
T Consensus 89 ~~l~~~l~~g~ivv~~st-~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~ll~~ 163 (296)
T 3qha_A 89 GELAGHAKPGTVIAIHST-ISDTTAVELARDLKARDIHIVD-APVSGGAAAAARGELATMVGA---DREVYERIKPAFKH 163 (296)
T ss_dssp HHHHTTCCTTCEEEECSC-CCHHHHHHHHHHHGGGTCEEEE-CCEESCHHHHHHTCEEEEEEC---CHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCEEEEeCC-CCHHHHHHHHHHHHHcCCEEEe-CCCcCCHHHHhcCCccEEecC---CHHHHHHHHHHHHH
Confidence 999998999999998754 4443 3444443 233332 23 22333445553 44443 68899999999999
Q ss_pred cCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHH---HHHcCCCHHHH------HHHHHHHHHHHHHHHHhcCCChH
Q 024016 161 VGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELA------LGLASQTVLGAASMVTKSGKHPG 230 (274)
Q Consensus 161 ~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~~Gl~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 230 (274)
+|.. +++++........+. .+.+.+..+..+.|+ +++.|+++++. .+++..+..++ . ..+ .+.
T Consensus 164 ~g~~~~~~g~~g~a~~~Kl~--~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~i~~~~~~s-~-~~~---~~~ 236 (296)
T 3qha_A 164 WAAVVIHAGEPGAGTRMKLA--RNMLTFTSYAAACEAMKLAEAAGLDLQALGRVVRHTDALTGGPGAI-M-VRD---NMK 236 (296)
T ss_dssp HEEEEEEEESTTHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCGGGG-C-CCS---SCS
T ss_pred HcCCeEEcCChhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhhcchHHHHhcCcccC-H-Hhh---chh
Confidence 9964 677654434444433 345555555555555 56899999998 66665443333 1 111 222
Q ss_pred HHHHhcCCCCchH-----HHHH-------HHHHhCCHHHHHHHHHHHHHHHHhhc
Q 024016 231 QLKDDVASPGGTT-----IAGI-------HELEKSGFRGILMNAVVAAAKRSREL 273 (274)
Q Consensus 231 ~~~~~~~~~~g~t-----~~~l-------~~l~~~~~~~~~~~a~~~~~~r~~~~ 273 (274)
.+ +. +.|++.. .... +..++.+++..+.+++.+.|+++.+.
T Consensus 237 ~~-~~-~~~~f~~~~~~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~ 289 (296)
T 3qha_A 237 DL-EP-DNFLYQPFLHTRGLGEKDLSLALALGEAVSVDLPLARLAYEGLAAGLGV 289 (296)
T ss_dssp CC-CT-TSTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTC
T ss_pred hh-hc-CCCCCchhhhhhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhc
Confidence 22 23 5677665 3332 33455678788888888888887764
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-23 Score=176.99 Aligned_cols=239 Identities=14% Similarity=0.189 Sum_probs=169.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC--CHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS--NLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r--~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~ 88 (274)
|||+|||+|+||.+|+.+|.++|+ +|++| +| ++++.+.+.+.|+. +++.++++++|+||+|||++...+.+
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~g~----~V~~~-~~~~~~~~~~~~~~~g~~--~~~~~~~~~aDvvi~~v~~~~~~~~~ 73 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSRGV----EVVTS-LEGRSPSTIERARTVGVT--ETSEEDVYSCPVVISAVTPGVALGAA 73 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTC----EEEEC-CTTCCHHHHHHHHHHTCE--ECCHHHHHTSSEEEECSCGGGHHHHH
T ss_pred CeEEEEechHHHHHHHHHHHHCCC----eEEEe-CCccCHHHHHHHHHCCCc--CCHHHHHhcCCEEEEECCCHHHHHHH
Confidence 589999999999999999999999 99999 99 77888888777877 67788889999999999998755556
Q ss_pred HHhccccCCCCEEEEecCCCCH---HHHHHhhCCCceEEE-cCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCCe
Q 024016 89 MQIRPLLSRKKLLVSVAAGVKL---KDLQEWTGHSRFIRV-MPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI 164 (274)
Q Consensus 89 ~~i~~~l~~~~~vis~~~g~~~---~~l~~~~~~~~~~~~-~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~ 164 (274)
.++.+.+++ ++|++ +++.+ +.+.+.++...++.. +-..|...+.|...++.++ .+ +.+++ |+.+|..
T Consensus 74 ~~~~~~~~~--~vi~~-s~~~~~~~~~l~~~~~~~g~~~~~v~~~~~~~~~g~~~~~~g~---~~--~~~~~-l~~~g~~ 144 (264)
T 1i36_A 74 RRAGRHVRG--IYVDI-NNISPETVRMASSLIEKGGFVDAAIMGSVRRKGADIRIIASGR---DA--EEFMK-LNRYGLN 144 (264)
T ss_dssp HHHHTTCCS--EEEEC-SCCCHHHHHHHHHHCSSSEEEEEEECSCHHHHGGGCEEEEEST---TH--HHHHG-GGGGTCE
T ss_pred HHHHHhcCc--EEEEc-cCCCHHHHHHHHHHHhhCCeeeeeeeCCccccccCCeEEecCC---cH--HHhhh-HHHcCCe
Confidence 777777655 77877 55554 356666653212221 1234555556666555443 22 78888 9999975
Q ss_pred -EEcCccchhhHHHhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCC
Q 024016 165 -WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPG 240 (274)
Q Consensus 165 -~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (274)
++++++ ......+..+.+.+++.+...+.|+ +++.|++++ +++.+.+++ +...... .+ .+.++.++|+
T Consensus 145 ~~~~~~~-~g~~~~~kl~~n~~~~~~~~~~~Ea~~la~~~G~~~~-~~~~~~~~~-g~~~~~~----~~-~~~~~~~~~g 216 (264)
T 1i36_A 145 IEVRGRE-PGDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEED-VLEMLEYTE-GNDFRES----AI-SRLKSSCIHA 216 (264)
T ss_dssp EEECSSS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTS-CSSTHHH----HH-HHHHHHHHTH
T ss_pred eEECCCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHhc-CccHHHH----HH-HHhcCCCCcc
Confidence 677764 4444444445577766677777777 789999986 777776654 2112111 22 3555556788
Q ss_pred chHHHHH----HHHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024016 241 GTTIAGI----HELEKSGFRGILMNAVVAAAKRSRELS 274 (274)
Q Consensus 241 g~t~~~l----~~l~~~~~~~~~~~a~~~~~~r~~~~~ 274 (274)
+++...+ +..++. ++..+.+++.+.++++++++
T Consensus 217 ~~~~~~~~~~~~~a~~~-v~~p~~~~v~~~~~~~~~~~ 253 (264)
T 1i36_A 217 RRRYEEMKEVQDMLAEV-IDPVMPTCIIRIFDKLKDVK 253 (264)
T ss_dssp HHHHHHHHHHHHHHHTT-SCCSHHHHHHHHHHHHCC--
T ss_pred hhhHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHcC
Confidence 8777766 677888 99999999999999988763
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-22 Score=173.25 Aligned_cols=252 Identities=11% Similarity=0.078 Sum_probs=168.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceecc------------Cchhhcc---CCC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLS------------DNNAVVE---YSD 73 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~------------~~~~~~~---~aD 73 (274)
++|||+|||+|+||++++..|.++|+ +|++| +|++++.+.+.+.|+.... +..++.+ ++|
T Consensus 2 ~~m~i~iiG~G~~G~~~a~~l~~~g~----~V~~~-~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 76 (316)
T 2ew2_A 2 NAMKIAIAGAGAMGSRLGIMLHQGGN----DVTLI-DQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVD 76 (316)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCS
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCC----cEEEE-ECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCC
Confidence 35799999999999999999999999 99999 9999999888876654321 3334444 899
Q ss_pred EEEEeeCcccHHHHHHHhccccCCCCEEEEecCCCCH-HHHHHhhCCCceE---------EEcCCcHHhhcCCceEEecC
Q 024016 74 VVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL-KDLQEWTGHSRFI---------RVMPNTPSAVGEAATVMSLG 143 (274)
Q Consensus 74 iIil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~-~~l~~~~~~~~~~---------~~~p~~~~~~~~g~~~i~~~ 143 (274)
+||+|+|++.+++++.++.+.++++++||++++|++. +.+++.++..+++ +..|+.+...+.|.+.+...
T Consensus 77 ~vi~~v~~~~~~~v~~~l~~~l~~~~~iv~~~~g~~~~~~l~~~~~~~~vi~g~~~~~~~~~~p~~~~~~~~g~~~i~~~ 156 (316)
T 2ew2_A 77 LIIALTKAQQLDAMFKAIQPMITEKTYVLCLLNGLGHEDVLEKYVPKENILVGITMWTAGLEGPGRVKLLGDGEIELENI 156 (316)
T ss_dssp EEEECSCHHHHHHHHHHHGGGCCTTCEEEECCSSSCTHHHHTTTSCGGGEEEEEECCCCEEEETTEEEECSCCCEEEEES
T ss_pred EEEEEeccccHHHHHHHHHHhcCCCCEEEEecCCCCcHHHHHHHcCCccEEEEEeeeeeEEcCCCEEEEecCCcEEEeec
Confidence 9999999999999999999999999999999999876 6677777643444 23455555556676666543
Q ss_pred CCCCHHHHHHHHHHhhhcCCeEEcCccc-------------hhhHHHhhcchHHHHH-------HHHHHHHHH---HHHc
Q 024016 144 GTATEEDGELIGKLFGSVGKIWRADEKL-------------FDAITGLSGSGPAYIF-------LAIEALADG---GVAA 200 (274)
Q Consensus 144 ~~~~~~~~~~v~~ll~~~g~~~~~~e~~-------------~~~~~a~~~~~~~~~~-------~~~~~l~e~---~~~~ 200 (274)
.+.+++..+.++++|+.+|..++..++. ++.++++.++.+.++. .+...+.|. +++.
T Consensus 157 ~~~~~~~~~~~~~ll~~~g~~~~~~~d~~~~~~~Kl~~N~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~E~~~la~~~ 236 (316)
T 2ew2_A 157 DPSGKKFALEVVDVFQKAGLNPSYSSNVRYSIWRKACVNGTLNGLCTILDCNIAEFGALPVSESLVKTLISEFAAVAEKE 236 (316)
T ss_dssp SGGGHHHHHHHHHHHHHTTCCEEECTTHHHHHHHHHHHHTTHHHHHHHHTCCHHHHHTSTTHHHHHHHHHHHHHHHHHHT
T ss_pred CCCccHHHHHHHHHHHhCCCCcEEchhHHHHHHHHHHHhhhHHHHHHHhCCcHHHHHhCHHHHHHHHHHHHHHHHHHHHc
Confidence 4446788999999999999764444442 5777888888777642 233344443 4578
Q ss_pred CCCH--HHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCc------hHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 024016 201 GLPR--ELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGG------TTIAGIHELEKSGFRGILMNAVVAAAKRS 270 (274)
Q Consensus 201 Gl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~t~~~l~~l~~~~~~~~~~~a~~~~~~r~ 270 (274)
|++. +...+++....... .. ....+.++.+. ..++. .....++..++.|+...+.+.+.+.++..
T Consensus 237 G~~~~~~~~~~~~~~~~~~~---~~-~~~~~sm~~d~-~~~g~~~E~~~~~~~~~~~a~~~gv~~P~~~~~~~~~~~~ 309 (316)
T 2ew2_A 237 AIYLDQAEVYTHIVQTYDPN---GI-GLHYPSMYQDL-IKNHRLTEIDYINGAVWRKGQKYNVATPFCAMLTQLVHGK 309 (316)
T ss_dssp TCCCCHHHHHHHHHHTTCTT---TT-TTSCCHHHHHH-TTTCCCCSGGGTHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHhccc---cC-CCCCcHHHHHH-HHcCCcchHHHHhhHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 9876 34444443211100 00 01112233222 01122 22234555566677777777776666544
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.3e-23 Score=176.09 Aligned_cols=249 Identities=16% Similarity=0.155 Sum_probs=167.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccHHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVKDVAM 89 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~~v~~ 89 (274)
|||+|||+|+||.+++.+|.+.|+ +|++| +|++++.+.+.+.|+....++.++++++|+||+|+| ++.+++++.
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~----~V~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~ 75 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKHGY----PLIIY-DVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYS 75 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHTTC----CEEEE-CSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHH
T ss_pred CeEEEEeccHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHh
Confidence 589999999999999999999999 99999 999999998888888888888888889999999995 667889887
Q ss_pred Hh---ccccCCCCEEEEecCCCCHHHHHH---hhCCCceEEEcCCcHHh-----hcCCceEEecCCCCCHHHHHHHHHHh
Q 024016 90 QI---RPLLSRKKLLVSVAAGVKLKDLQE---WTGHSRFIRVMPNTPSA-----VGEAATVMSLGGTATEEDGELIGKLF 158 (274)
Q Consensus 90 ~i---~~~l~~~~~vis~~~g~~~~~l~~---~~~~~~~~~~~p~~~~~-----~~~g~~~i~~~~~~~~~~~~~v~~ll 158 (274)
++ .+.+++++++|+ +++++++..++ .++.. . +.+|+.|.. ...+...++.+ .+++..+.++++|
T Consensus 76 ~~~~~~~~l~~~~~vv~-~s~~~~~~~~~~~~~~~~~-g-~~~~~~p~~~g~~~a~~~~~~~~~~--~~~~~~~~v~~l~ 150 (296)
T 2gf2_A 76 GANGILKKVKKGSLLID-SSTIDPAVSKELAKEVEKM-G-AVFMDAPVSGGVGAARSGNLTFMVG--GVEDEFAAAQELL 150 (296)
T ss_dssp STTSGGGTCCTTCEEEE-CSCCCHHHHHHHHHHHHHT-T-CEEEECCEESHHHHHHHTCEEEEEE--SCGGGHHHHHHHH
T ss_pred CchhHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHc-C-CEEEEcCCCCChhHHhcCcEEEEeC--CCHHHHHHHHHHH
Confidence 64 446788999999 78888765443 23211 1 112222222 22455444444 3688899999999
Q ss_pred hhcCCe-EEcCccchhhHHHhhcchHHHHH----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Q 024016 159 GSVGKI-WRADEKLFDAITGLSGSGPAYIF----LAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLK 233 (274)
Q Consensus 159 ~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~----~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (274)
+.+|.. ++++.........+.. +.+.+ .+.|++. .+++.|++++++.+++..+. +...++...+..|..+.
T Consensus 151 ~~~g~~~~~~~~~g~~~~~kl~~--n~~~~~~~~~~~Ea~~-~~~~~G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~ 226 (296)
T 2gf2_A 151 GCMGSNVVYCGAVGTGQAAKICN--NMLLAISMIGTAEAMN-LGIRLGLDPKLLAKILNMSS-GRCWSSDTYNPVPGVMD 226 (296)
T ss_dssp TTTEEEEEEEESTTHHHHHHHHH--HHHHHHHHHHHHHHHH-HHHHTTCCHHHHHHHHHTST-TCBHHHHHSCSSTTTCS
T ss_pred HHHcCCeEEeCCccHHHHHHHHH--HHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHHhCc-ccCHHHHhcCCcccccc
Confidence 999965 5555432222222211 11222 2333433 46789999999888877532 22233333333333332
Q ss_pred ----HhcCCCCchHHH-------HHHHHHhCCHHHHHHHHHHHHHHHHhhc
Q 024016 234 ----DDVASPGGTTIA-------GIHELEKSGFRGILMNAVVAAAKRSREL 273 (274)
Q Consensus 234 ----~~~~~~~g~t~~-------~l~~l~~~~~~~~~~~a~~~~~~r~~~~ 273 (274)
.+.+.+++..+. .++..++.|+...+.+++.+.++++.+.
T Consensus 227 ~s~~~~~~~~g~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~ 277 (296)
T 2gf2_A 227 GVPSANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAK 277 (296)
T ss_dssp SSGGGGTTCSSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred cchhccCCCCCCchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHc
Confidence 223455554432 3555677889999999999999988764
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.3e-21 Score=167.32 Aligned_cols=252 Identities=15% Similarity=0.113 Sum_probs=167.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcC--------------ceeccCchhhccCCCE
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG--------------VKVLSDNNAVVEYSDV 74 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g--------------~~~~~~~~~~~~~aDi 74 (274)
++|||+|||+|+||++++..|.++|+ +|++| +|++++.+.+.+.+ +...+++.++++++|+
T Consensus 28 ~~mkI~VIGaG~mG~alA~~La~~G~----~V~l~-~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDv 102 (356)
T 3k96_A 28 FKHPIAILGAGSWGTALALVLARKGQ----KVRLW-SYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTD 102 (356)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHTTTC----CEEEE-CSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCE
T ss_pred cCCeEEEECccHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCE
Confidence 35799999999999999999999999 99999 99999988887643 3455677788899999
Q ss_pred EEEeeCcccHHHHHHHhccccCCCCEEEEecCCCCHH------HHHHhhCCCc-eEEEcCCcHHhhcCCc-eEEecCCCC
Q 024016 75 VVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLK------DLQEWTGHSR-FIRVMPNTPSAVGEAA-TVMSLGGTA 146 (274)
Q Consensus 75 Iil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~~------~l~~~~~~~~-~~~~~p~~~~~~~~g~-~~i~~~~~~ 146 (274)
||+|||++.++++++++.++++++++||++++|+..+ .+++.++..+ .+...|+.+.++..+. +.++.+ ..
T Consensus 103 VilaVp~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~~~~~~vlsgP~~a~ev~~g~pt~~via-~~ 181 (356)
T 3k96_A 103 ILIVVPSFAFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQVPMAVISGPSLATEVAANLPTAVSLA-SN 181 (356)
T ss_dssp EEECCCHHHHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHCSCCEEEEESSCCHHHHHTTCCEEEEEE-ES
T ss_pred EEECCCHHHHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcCCCCEEEEECccHHHHHHcCCCeEEEEe-cC
Confidence 9999999999999999999999999999999998764 5666676333 3456788887776654 323222 23
Q ss_pred CHHHHHHHHHHhhhcCCeEEcCccchh--------hHHHh--------hcchHHHHHHHHHHHHHH---HHHcCCCHHHH
Q 024016 147 TEEDGELIGKLFGSVGKIWRADEKLFD--------AITGL--------SGSGPAYIFLAIEALADG---GVAAGLPRELA 207 (274)
Q Consensus 147 ~~~~~~~v~~ll~~~g~~~~~~e~~~~--------~~~a~--------~~~~~~~~~~~~~~l~e~---~~~~Gl~~~~~ 207 (274)
+++..+.++++|+..+..++.+++... .+.++ .-..+...+.+..++.|. +.+.|.+++.+
T Consensus 182 ~~~~~~~v~~lf~~~~~rv~~~~Di~g~e~~galkNviaia~G~~~gl~~g~N~~aal~~~~l~E~~~l~~a~G~~~~t~ 261 (356)
T 3k96_A 182 NSQFSKDLIERLHGQRFRVYKNDDMIGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLTEMGRLVSVFGGKQETL 261 (356)
T ss_dssp CHHHHHHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred CHHHHHHHHHHhCCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhCCChHhh
Confidence 688899999999988866555444221 11111 111233445555566655 56899999887
Q ss_pred HHH------HHHHHHH------HHHHHHhcCCChHHHHHhc-CCCCc-hH-HHHHHHHHhCCHHHHHHHHHHHHH
Q 024016 208 LGL------ASQTVLG------AASMVTKSGKHPGQLKDDV-ASPGG-TT-IAGIHELEKSGFRGILMNAVVAAA 267 (274)
Q Consensus 208 ~~~------~~~~~~~------~~~~~~~~~~~~~~~~~~~-~~~~g-~t-~~~l~~l~~~~~~~~~~~a~~~~~ 267 (274)
..+ +...... ....+ -.|.+.++..+.. ...-| .| ...++..++.++.-.+.+++.+.+
T Consensus 262 ~gl~g~gDl~~tc~s~~sRN~~~G~~l-~~g~~~~~~~~~~~~~~eG~~t~~~~~~la~~~~v~~Pi~~~v~~il 335 (356)
T 3k96_A 262 TGLAGLGDLVLTCTDNQSRNRRFGLAL-GEGVDKKEAQQAIGQAIEGLYNTDQVHALAQKHAIEMPLTFQVHRIL 335 (356)
T ss_dssp TSTTTHHHHHHHHHCTTCHHHHHHHHH-HHTCCHHHHHHHHCSCCSHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred cccchhhHHHHhccCCCCccHHHHHHH-HCCCCHHHHHHHcCCccchHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 632 2211110 01111 1255555544332 12222 33 333444466676666666665544
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-21 Score=178.77 Aligned_cols=196 Identities=11% Similarity=0.113 Sum_probs=148.9
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc----CceeccCchhhccC---CCEEEEee
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI----GVKVLSDNNAVVEY---SDVVVFSV 79 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~----g~~~~~~~~~~~~~---aDiIil~v 79 (274)
.|++++|||||+|+||++|+.+|.++|+ +|++| ||++++.+.+.+. |+..+.++.++++. +|+||+||
T Consensus 12 ~~~~~~IgvIGlG~MG~~lA~~La~~G~----~V~v~-~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~V 86 (480)
T 2zyd_A 12 HMSKQQIGVVGMAVMGRNLALNIESRGY----TVSIF-NRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMV 86 (480)
T ss_dssp ---CBSEEEECCSHHHHHHHHHHHTTTC----CEEEE-CSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECS
T ss_pred ccCCCeEEEEccHHHHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEEC
Confidence 4678899999999999999999999999 99999 9999999988874 78888888888876 99999999
Q ss_pred Cc-ccHHHHHHHhccccCCCCEEEEecCCCCH--HHHHHhhC--CCceEEEcCC--cHHhhcCCceEEecCCCCCHHHHH
Q 024016 80 KP-QVVKDVAMQIRPLLSRKKLLVSVAAGVKL--KDLQEWTG--HSRFIRVMPN--TPSAVGEAATVMSLGGTATEEDGE 152 (274)
Q Consensus 80 ~~-~~~~~v~~~i~~~l~~~~~vis~~~g~~~--~~l~~~~~--~~~~~~~~p~--~~~~~~~g~~~i~~~~~~~~~~~~ 152 (274)
|+ +.++++++++.+.++++++||+++++... ..+.+.++ +..++. .|. .|.....|.+++..+ +++.++
T Consensus 87 p~~~~v~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~-~pv~gg~~~a~~g~~i~~gg---~~~~~~ 162 (480)
T 2zyd_A 87 KAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIG-TGVSGGEEGALKGPSIMPGG---QKEAYE 162 (480)
T ss_dssp CSSSHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-EEEESHHHHHHHCCEEEEES---CHHHHH
T ss_pred CCHHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeC-CccccCHhHHhcCCeEEecC---CHHHHH
Confidence 98 58999999999999999999999888754 34555553 234443 242 455456677555544 688999
Q ss_pred HHHHHhhhcCCe--------EEcCccchhhHHHhhcchHHHHHHHHHHHHHH---HHH-cCCCHHHHHHHHHH
Q 024016 153 LIGKLFGSVGKI--------WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVA-AGLPRELALGLASQ 213 (274)
Q Consensus 153 ~v~~ll~~~g~~--------~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~-~Gl~~~~~~~~~~~ 213 (274)
.++++|+.+|.. .++++........+. .+.+.+..+..+.|+ +++ .|++++++.+++..
T Consensus 163 ~v~~ll~~~g~~~~dGe~~v~~~g~~G~g~~~Kl~--~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~l~~~ 233 (480)
T 2zyd_A 163 LVAPILTKIAAVAEDGEPCVTYIGADGAGHYVKMV--HNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTE 233 (480)
T ss_dssp HHHHHHHHHSCBCTTSCBSBCCCBSTTHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCceEEEECCccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 999999999854 456665444444443 244555667777777 567 69999999888753
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.7e-21 Score=164.14 Aligned_cols=196 Identities=15% Similarity=0.106 Sum_probs=147.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc-----------C--------------ceec
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-----------G--------------VKVL 62 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~-----------g--------------~~~~ 62 (274)
|+.+||+|||+|.||++||..|.++|+ +|++| ||++++++.+.+. | +...
T Consensus 2 m~~~kV~VIGaG~mG~~iA~~la~~G~----~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ 76 (283)
T 4e12_A 2 TGITNVTVLGTGVLGSQIAFQTAFHGF----AVTAY-DINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYS 76 (283)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEe
Confidence 456799999999999999999999999 99999 9999887766542 2 3556
Q ss_pred cCchhhccCCCEEEEeeCcc--cHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceE
Q 024016 63 SDNNAVVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATV 139 (274)
Q Consensus 63 ~~~~~~~~~aDiIil~v~~~--~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~ 139 (274)
+++.+++++||+||+|+|++ ...+++.++.+.++++++++|.+++++++.+.+.++ ..++++.||..|....... .
T Consensus 77 ~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~la~~~~~~~~~ig~h~~~p~~~~~lv-e 155 (283)
T 4e12_A 77 DDLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLVGYTGRGDKFLALHFANHVWVNNTA-E 155 (283)
T ss_dssp SCHHHHTTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHHHHSCGGGEEEEEECSSTTTSCEE-E
T ss_pred CCHHHHhccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEccCCCcccCceE-E
Confidence 77778889999999999987 678888999888999999999999999988887775 3578899988776654433 4
Q ss_pred EecCCCCCHHHHHHHHHHhhhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 024016 140 MSLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTV 215 (274)
Q Consensus 140 i~~~~~~~~~~~~~v~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~ 215 (274)
++++...+++.++.++++++.+|+. ++++.+....+.. ..+...+.+++. .+.+.+.++++..+++..++
T Consensus 156 vv~~~~t~~~~~~~~~~l~~~~g~~~v~v~~~~~g~i~n-----r~~~~~~~ea~~-l~~~g~~~~~~id~~~~~~~ 226 (283)
T 4e12_A 156 VMGTTKTDPEVYQQVVEFASAIGMVPIELKKEKAGYVLN-----SLLVPLLDAAAE-LLVDGIADPETIDKTWRIGT 226 (283)
T ss_dssp EEECTTSCHHHHHHHHHHHHHTTCEEEECSSCCTTTTHH-----HHHHHHHHHHHH-HHHTTSCCHHHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCEEeh-----HHHHHHHHHHHH-HHHhCCCCHHHHHHHHHhcc
Confidence 5667777899999999999999976 7774433222110 111122233322 23455679998877776543
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-21 Score=171.12 Aligned_cols=200 Identities=15% Similarity=0.156 Sum_probs=143.7
Q ss_pred CCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCC---CEEEEeeC
Q 024016 4 FPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYS---DVVVFSVK 80 (274)
Q Consensus 4 ~~~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~a---DiIil~v~ 80 (274)
-|.+|++|||||||+|.||.+|+.+|.++|+ +|++| ||++++.+.+.+.|+..+.++.++++++ |+||+|||
T Consensus 16 ~~~Mm~~mkIgiIGlG~mG~~~A~~L~~~G~----~V~v~-dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp 90 (358)
T 4e21_A 16 ENLYFQSMQIGMIGLGRMGADMVRRLRKGGH----ECVVY-DLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVP 90 (358)
T ss_dssp ------CCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSC
T ss_pred chhhhcCCEEEEECchHHHHHHHHHHHhCCC----EEEEE-eCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCC
Confidence 4566677999999999999999999999999 99999 9999999999988988888899988888 99999999
Q ss_pred cccHHHHHHHhccccCCCCEEEEecCCCCH--HHHHHhhC--CCceEEE-cCCcHHhhcCCceEEecCCCCCHHHHHHHH
Q 024016 81 PQVVKDVAMQIRPLLSRKKLLVSVAAGVKL--KDLQEWTG--HSRFIRV-MPNTPSAVGEAATVMSLGGTATEEDGELIG 155 (274)
Q Consensus 81 ~~~~~~v~~~i~~~l~~~~~vis~~~g~~~--~~l~~~~~--~~~~~~~-~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~ 155 (274)
++.+++++.++.+.++++++||+++++.+. ..+.+.+. +..++.. +...+.....|.++++.+ +++.++.++
T Consensus 91 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg~~~a~~G~~im~GG---~~~a~~~~~ 167 (358)
T 4e21_A 91 AAVVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGGIFGLERGYCLMIGG---EKQAVERLD 167 (358)
T ss_dssp GGGHHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECGGGHHHHCCEEEEES---CHHHHHHTH
T ss_pred HHHHHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCCHHHHhcCCeeeecC---CHHHHHHHH
Confidence 889999999999999999999988665432 23333332 3334432 112333444566555544 689999999
Q ss_pred HHhhhcC--------------------C-eEEcCccchhhHHHhhcchHHHHHHHHHHHHHH---HHHc-----------
Q 024016 156 KLFGSVG--------------------K-IWRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAA----------- 200 (274)
Q Consensus 156 ~ll~~~g--------------------~-~~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~~----------- 200 (274)
++|+.+| . .+++++.....++.++ .+.+++..+.++.|+ +++.
T Consensus 168 ~ll~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~g~~~Kl~--~n~l~~~~i~~~aE~~~la~~a~~~~~~~~~~~ 245 (358)
T 4e21_A 168 PVFRTLAPGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKMV--HNGIEYGLMAAYAEGLNILHHANAGKEGQGADA 245 (358)
T ss_dssp HHHHHHSCCGGGSCCCTTGGGCCSSGGGTEEEEESTTHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTTCC--------
T ss_pred HHHHHhccccccCcccccccccccccccceEEECCccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 9999999 3 3667665444444433 234444445555554 3455
Q ss_pred -------------CCCHHHHHHHHHH
Q 024016 201 -------------GLPRELALGLASQ 213 (274)
Q Consensus 201 -------------Gl~~~~~~~~~~~ 213 (274)
|++.++..++...
T Consensus 246 ~~~~~~~~~~~~~~~d~~~i~~~~~~ 271 (358)
T 4e21_A 246 ETAPLRNPDFYRYDLDLADITEVWRR 271 (358)
T ss_dssp ------CGGGCCCCCCHHHHHHHHTT
T ss_pred cccccccchhcccCCCHHHHHHHHhC
Confidence 7898888777654
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-22 Score=163.78 Aligned_cols=153 Identities=14% Similarity=0.226 Sum_probs=127.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEE-EeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCcccHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICT-AVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v-~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~~~~ 85 (274)
|++|||+|||+|+||.+++++|.++|+ +|++ | +|++++++.+.+ .|+....+..+.++++|+||+|+|++.+.
T Consensus 21 m~mmkI~IIG~G~mG~~la~~l~~~g~----~V~~v~-~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp~~~~~ 95 (220)
T 4huj_A 21 QSMTTYAIIGAGAIGSALAERFTAAQI----PAIIAN-SRGPASLSSVTDRFGASVKAVELKDALQADVVILAVPYDSIA 95 (220)
T ss_dssp GGSCCEEEEECHHHHHHHHHHHHHTTC----CEEEEC-TTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESCGGGHH
T ss_pred hcCCEEEEECCCHHHHHHHHHHHhCCC----EEEEEE-CCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCChHHHH
Confidence 457899999999999999999999999 8998 8 999999988776 57766566677789999999999999999
Q ss_pred HHHHHhccccCCCCEEEEecCCC--------------CHHHHHHhhCCCceEEEcCCcHHhhcC-C-------ceEEecC
Q 024016 86 DVAMQIRPLLSRKKLLVSVAAGV--------------KLKDLQEWTGHSRFIRVMPNTPSAVGE-A-------ATVMSLG 143 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~~g~--------------~~~~l~~~~~~~~~~~~~p~~~~~~~~-g-------~~~i~~~ 143 (274)
+++.++.+ + ++++||++++++ ..+.+++.+++.++++.+|+.|..... + ...++.+
T Consensus 96 ~v~~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~~vv~~~~~~~~~v~~~g~~~~~~~~~v~~~g 173 (220)
T 4huj_A 96 DIVTQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVPGAKVVKAFNTLPAAVLAADPDKGTGSRVLFLSG 173 (220)
T ss_dssp HHHTTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHSTTCEEEEESCSSCHHHHTSCSBCSSCEEEEEEEE
T ss_pred HHHHHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCCCCCEEECCCCCCHHHhhhCcccCCCCeeEEEeC
Confidence 99999887 5 688999999888 357888888877899999988776544 2 2334444
Q ss_pred CCCCHHHHHHHHHHhhhcCCe-EEcCc
Q 024016 144 GTATEEDGELIGKLFGSVGKI-WRADE 169 (274)
Q Consensus 144 ~~~~~~~~~~v~~ll~~~g~~-~~~~e 169 (274)
. +++..+.++++|+.+|.. +++++
T Consensus 174 ~--~~~~~~~v~~l~~~~G~~~~~~G~ 198 (220)
T 4huj_A 174 N--HSDANRQVAELISSLGFAPVDLGT 198 (220)
T ss_dssp S--CHHHHHHHHHHHHHTTCEEEECCS
T ss_pred C--CHHHHHHHHHHHHHhCCCeEeeCC
Confidence 3 689999999999999975 67664
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.5e-21 Score=168.09 Aligned_cols=249 Identities=16% Similarity=0.196 Sum_probs=161.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcC-----------ceeccCchhhccCCCEEEEe
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG-----------VKVLSDNNAVVEYSDVVVFS 78 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g-----------~~~~~~~~~~~~~aDiIil~ 78 (274)
.|||+|||+|+||++|+.+|.++|+ +|++| +|++++.+.+.+.| +..++++.+ ++++|+||+|
T Consensus 14 ~~kI~iIG~G~mG~ala~~L~~~G~----~V~~~-~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~ 87 (335)
T 1z82_A 14 EMRFFVLGAGSWGTVFAQMLHENGE----EVILW-ARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIA 87 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEEC
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEE
Confidence 4799999999999999999999999 99999 99999999888765 466677778 8899999999
Q ss_pred eCcccHHHHHHHhccccCCCCEEEEecCCCCHH---HHHHh----hCCCceEEEcCCcHHhhcCCc-eEEecCCCCCHHH
Q 024016 79 VKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLK---DLQEW----TGHSRFIRVMPNTPSAVGEAA-TVMSLGGTATEED 150 (274)
Q Consensus 79 v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~~---~l~~~----~~~~~~~~~~p~~~~~~~~g~-~~i~~~~~~~~~~ 150 (274)
||++++++++.++.+ +++++|++++|++.+ .+.+. ++....++..|+.+...+.|. +.++.+. .+
T Consensus 88 vk~~~~~~v~~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~g~---~~- 160 (335)
T 1z82_A 88 IPVQYIREHLLRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEILGCPYAVLSGPSHAEEVAKKLPTAVTLAG---EN- 160 (335)
T ss_dssp SCGGGHHHHHTTCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHTCCCEEEEESSCCHHHHHTTCCEEEEEEE---TT-
T ss_pred CCHHHHHHHHHHhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHcCCceEEEECCccHHHHhCCCceEEEEEe---hh-
Confidence 999999999988776 788999999887753 23332 221135678899988777665 3444332 12
Q ss_pred HHHHHHHhhhcCCeEEcCccch---------hh----HHHhhc--c-hHHHHHHHHHHHHH---HHHHcCCCHHHHHHHH
Q 024016 151 GELIGKLFGSVGKIWRADEKLF---------DA----ITGLSG--S-GPAYIFLAIEALAD---GGVAAGLPRELALGLA 211 (274)
Q Consensus 151 ~~~v~~ll~~~g~~~~~~e~~~---------~~----~~a~~~--~-~~~~~~~~~~~l~e---~~~~~Gl~~~~~~~~~ 211 (274)
.+.++++|+..|...+..++.. +. ..++.+ . .+.+...+...+.| .+++.|++++.+.++.
T Consensus 161 ~~~~~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~g~~~~~n~~~a~~~~~~~E~~~la~a~G~~~~~~~~l~ 240 (335)
T 1z82_A 161 SKELQKRISTEYFRVYTCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGMFFGADQKTFMGLA 240 (335)
T ss_dssp HHHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTSTT
T ss_pred HHHHHHHhCCCCEEEEecCchHHHHHHHHHHhHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhCCChhhhcccc
Confidence 7789999999997644444322 11 111111 1 12222333334444 3678999998765431
Q ss_pred --HH---HHH-------HHHHHHHhcCCChHHHHHhcCCCC---chHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 024016 212 --SQ---TVL-------GAASMVTKSGKHPGQLKDDVASPG---GTTIAGIHELEKSGFRGILMNAVVAAAKRSRE 272 (274)
Q Consensus 212 --~~---~~~-------~~~~~~~~~~~~~~~~~~~~~~~~---g~t~~~l~~l~~~~~~~~~~~a~~~~~~r~~~ 272 (274)
.+ +.. ...+.+. .+.+++.+.+...+.- ..+...++..++.|++..+.+++.+.+++.++
T Consensus 241 ~~~~~~~t~~s~~~~n~~~~~~~~-~g~~~~~~~~~~g~~~e~~~~~~~v~~~a~~~gv~~P~~~~v~~~~~~~~~ 315 (335)
T 1z82_A 241 GIGDLMVTCNSRYSRNRRFGELIA-RGFNPLKLLESSNQVVEGAFTVKAVMKIAKENKIDMPISEEVYRVVYEGKP 315 (335)
T ss_dssp THHHHHHHHHCTTCHHHHHHHHHH-HTCCHHHHHHTCSSCCTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHSCCC
T ss_pred cccceeeeccCccCcHHHHHHHHh-CCCCHHHHHHhcCCeeeHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhCCCC
Confidence 11 000 0112222 2445555544332211 11223344457788888888888888776544
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.7e-22 Score=170.12 Aligned_cols=242 Identities=14% Similarity=0.134 Sum_probs=158.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhC-----C-CCCCCcEEEEeCCCHHHHHHHHH-cCceecc-------------Cchhhcc
Q 024016 11 FILGFIGAGKMAESIAKGVAKS-----G-VLPPDRICTAVHSNLKRRDAFES-IGVKVLS-------------DNNAVVE 70 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~-----g-~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~-------------~~~~~~~ 70 (274)
|||+|||+|+||++|+.+|.++ | + +|++| +| +++.+.+.+ .|+.+.. +..+.+.
T Consensus 9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~----~V~~~-~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (317)
T 2qyt_A 9 IKIAVFGLGGVGGYYGAMLALRAAATDGLL----EVSWI-AR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVG 82 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHTTSSE----EEEEE-CC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHC
T ss_pred CEEEEECcCHHHHHHHHHHHhCccccCCCC----CEEEE-Ec-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccC
Confidence 6999999999999999999999 9 8 99999 99 888888888 7876543 3445678
Q ss_pred CCCEEEEeeCcccHHHHHHHhccccCCCCEEEEecCCCCH-HHHHHhhCCCceEEEcCCcHHh---------hcCCceE-
Q 024016 71 YSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL-KDLQEWTGHSRFIRVMPNTPSA---------VGEAATV- 139 (274)
Q Consensus 71 ~aDiIil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~-~~l~~~~~~~~~~~~~p~~~~~---------~~~g~~~- 139 (274)
++|+||+|||+++++++++++.+.++++++||++++|+.. +.+++.++..++++.+++.+.. .+.|...
T Consensus 83 ~~D~vil~vk~~~~~~v~~~i~~~l~~~~~iv~~~nG~~~~~~l~~~l~~~~v~~g~~~~~a~~~~pg~~~~~~~g~~~~ 162 (317)
T 2qyt_A 83 TVDYILFCTKDYDMERGVAEIRPMIGQNTKILPLLNGADIAERMRTYLPDTVVWKGCVYISARKSAPGLITLEADRELFY 162 (317)
T ss_dssp CEEEEEECCSSSCHHHHHHHHGGGEEEEEEEEECSCSSSHHHHHTTTSCTTTBCEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CCCEEEEecCcccHHHHHHHHHhhcCCCCEEEEccCCCCcHHHHHHHCCCCcEEEEEEEEEEEEcCCCEEEEcCCCceEE
Confidence 8999999999999999999999988888999999999987 5677777654555555443221 2334333
Q ss_pred EecC-CCCCHHHHHHHHHHhhhcCCeEEcCcc-------------chhhHHHhhcchHHHHH-----HHHHHHHHH---H
Q 024016 140 MSLG-GTATEEDGELIGKLFGSVGKIWRADEK-------------LFDAITGLSGSGPAYIF-----LAIEALADG---G 197 (274)
Q Consensus 140 i~~~-~~~~~~~~~~v~~ll~~~g~~~~~~e~-------------~~~~~~a~~~~~~~~~~-----~~~~~l~e~---~ 197 (274)
+... +..+.+.. .+.++|+..|..++..++ .++.++++.++++.++. .+...+.|. +
T Consensus 163 ig~~~~~~~~~~~-~~~~ll~~~g~~~~~~~di~~~~~~Kl~~N~~~~~~~al~g~~~g~~~~~~~~~~~~~~~E~~~v~ 241 (317)
T 2qyt_A 163 FGSGLPEQTDDEV-RLAELLTAAGIRAYNPTDIDWYIMKKFMMISVTATATAYFDKPIGSILTEHEPELLSLLEEVAELF 241 (317)
T ss_dssp EECCSSSCCHHHH-HHHHHHHHTTCCEECCSCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred EcCCCCCCcCHHH-HHHHHHHHCCCCCEEchHHHHHHHHHHHHHHhhHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 22356667 899999999976554454 46778888888887763 222344443 4
Q ss_pred HHcCCCHH--HHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCc------hHHHHHHHHHhCCHHHHHHHHHHHHH
Q 024016 198 VAAGLPRE--LALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGG------TTIAGIHELEKSGFRGILMNAVVAAA 267 (274)
Q Consensus 198 ~~~Gl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~t~~~l~~l~~~~~~~~~~~a~~~~~ 267 (274)
++.|++.+ ...+++........+ ..+.++. ++ .++. .+...++.-++.|+...+.+.+.+.+
T Consensus 242 ~a~G~~~~~~~~~~~~~~~~~~~~~------~~~sm~~-d~-~~g~~~E~~~~~g~~~~~a~~~gv~~P~~~~~~~~~ 311 (317)
T 2qyt_A 242 RAKYGQVPDDVVQQLLDKQRKMPPE------STSSMHS-DF-LQGGSTEVETLTGYVVREAEALRVDLPMYKRMYREL 311 (317)
T ss_dssp HHHTSCCCSSHHHHHHHHHHHC----------------------------CTTTHHHHHHHHHTTCCCHHHHHHHHTT
T ss_pred HHcCCCCChHHHHHHHHHHhccCCC------CCChHHH-HH-HcCCccCHHHHhhHHHHHHHHcCCCCCHHHHHHHHH
Confidence 57898753 455555433211111 1112222 11 1222 23344555566677766666655443
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.8e-21 Score=173.04 Aligned_cols=193 Identities=15% Similarity=0.163 Sum_probs=148.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----cCceeccCchhhccC---CCEEEEeeCc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IGVKVLSDNNAVVEY---SDVVVFSVKP 81 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-----~g~~~~~~~~~~~~~---aDiIil~v~~ 81 (274)
..+|||||+|+||++|+.+|.++|| +|++| ||++++++.+.+ .|+..+.++.++++. +|+||+|||+
T Consensus 10 ~~~IgvIGlG~MG~~lA~~La~~G~----~V~v~-dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~ 84 (497)
T 2p4q_A 10 SADFGLIGLAVMGQNLILNAADHGF----TVCAY-NRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKA 84 (497)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCS
T ss_pred CCCEEEEeeHHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCC
Confidence 3689999999999999999999999 99999 999999999987 578877888888776 9999999998
Q ss_pred -ccHHHHHHHhccccCCCCEEEEecCCCCH--HHHHHhhC--CCceEEEcC--CcHHhhcCCceEEecCCCCCHHHHHHH
Q 024016 82 -QVVKDVAMQIRPLLSRKKLLVSVAAGVKL--KDLQEWTG--HSRFIRVMP--NTPSAVGEAATVMSLGGTATEEDGELI 154 (274)
Q Consensus 82 -~~~~~v~~~i~~~l~~~~~vis~~~g~~~--~~l~~~~~--~~~~~~~~p--~~~~~~~~g~~~i~~~~~~~~~~~~~v 154 (274)
+.++++++++.+.++++++||+++++.+. ..+.+.+. +..++. +| +.|.....|.+++..+ +++.++.+
T Consensus 85 ~~~v~~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~-~pVsgg~~~a~~G~~im~gg---~~e~~~~v 160 (497)
T 2p4q_A 85 GAPVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVG-SGVSGGEEGARYGPSLMPGG---SEEAWPHI 160 (497)
T ss_dssp SHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-EEEESHHHHHHHCCEEEEEE---CGGGHHHH
T ss_pred hHHHHHHHHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeC-CCcccChhHhhcCCeEEecC---CHHHHHHH
Confidence 58999999999999999999998877653 34544443 334443 24 4565566677555543 68899999
Q ss_pred HHHhhhcCCe-------EEcCccchhhHHHhhcchHHHHHHHHHHHHHH---HHH-cCCCHHHHHHHHHH
Q 024016 155 GKLFGSVGKI-------WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVA-AGLPRELALGLASQ 213 (274)
Q Consensus 155 ~~ll~~~g~~-------~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~-~Gl~~~~~~~~~~~ 213 (274)
+++|+.+|.. .++++........+. .+.+.+..+..+.|+ +++ .|++++++.+++..
T Consensus 161 ~~ll~~~g~~~dGe~~v~~vg~~G~g~~~Kl~--~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~~~~~ 228 (497)
T 2p4q_A 161 KNIFQSISAKSDGEPCCEWVGPAGAGHYVKMV--HNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVFAK 228 (497)
T ss_dssp HHHHHHHSCEETTEESCCCCEETTHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHhcCccCCCCceEEECCccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHH
Confidence 9999999964 455554444444433 244556667777777 567 59999999888853
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.3e-20 Score=158.94 Aligned_cols=191 Identities=13% Similarity=0.106 Sum_probs=139.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH-----------Hc------------------Cce
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE-----------SI------------------GVK 60 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~-----------~~------------------g~~ 60 (274)
++||+|||+|.||++||..|.++|+ +|++| ||++++++.+. +. .++
T Consensus 15 ~~~I~VIG~G~mG~~iA~~la~~G~----~V~~~-d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~ 89 (302)
T 1f0y_A 15 VKHVTVIGGGLMGAGIAQVAAATGH----TVVLV-DQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIA 89 (302)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC----eEEEE-ECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceE
Confidence 4689999999999999999999999 99999 99998876532 12 244
Q ss_pred eccCchhhccCCCEEEEeeCccc--HHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCc
Q 024016 61 VLSDNNAVVEYSDVVVFSVKPQV--VKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAA 137 (274)
Q Consensus 61 ~~~~~~~~~~~aDiIil~v~~~~--~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~ 137 (274)
..+++.+.+++||+||+|+|++. .++++.++.+.++++++|++.+++++++.+.+.++ ..++++.||..|.......
T Consensus 90 ~~~~~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~~l~~~~~~~~~~~g~h~~~P~~~~~~~ 169 (302)
T 1f0y_A 90 TSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLV 169 (302)
T ss_dssp EESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEE
T ss_pred EecCHHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCCcccEEEEecCCCcccCceE
Confidence 56677778899999999998754 56788889888889999999889999998887665 3468899998887654444
Q ss_pred eEEecCCCCCHHHHHHHHHHhhhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 024016 138 TVMSLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQ 213 (274)
Q Consensus 138 ~~i~~~~~~~~~~~~~v~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~ 213 (274)
.++.++..+++.++.+.++++.+|+. +++.+.. . . + .+.++..++.-....+.+.|+++++...++..
T Consensus 170 -~i~~g~~~~~e~~~~~~~l~~~~G~~~v~~~~~~-g-~--i---~nr~l~~~~~Ea~~l~~~g~~~~~~id~~~~~ 238 (302)
T 1f0y_A 170 -EVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTP-G-F--I---VNRLLVPYLMEAIRLYERGDASKEDIDTAMKL 238 (302)
T ss_dssp -EEECCTTCCHHHHHHHHHHHHHTTCEEEEECSCT-T-T--T---HHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred -EEeCCCCCCHHHHHHHHHHHHHcCCceEEecCcc-c-c--c---HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 45667777899999999999999975 6655421 1 0 0 11222222212222344666888887666543
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-20 Score=162.94 Aligned_cols=241 Identities=18% Similarity=0.200 Sum_probs=152.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC-CCCCCcEEEEeCCCH-------HHHHHHHHcCceecc-CchhhccCCCEEEEeeC
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSG-VLPPDRICTAVHSNL-------KRRDAFESIGVKVLS-DNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g-~~~~~~v~v~~~r~~-------~~~~~l~~~g~~~~~-~~~~~~~~aDiIil~v~ 80 (274)
+|||+|||+|.||.+|+.+|.++| + +|++| ||++ +..+.+.+.|+ .+ ++.+++++||+||+|||
T Consensus 24 ~m~IgvIG~G~mG~~lA~~L~~~G~~----~V~~~-dr~~~~~~~~~~~~~~~~~~g~--~~~s~~e~~~~aDvVi~avp 96 (317)
T 4ezb_A 24 MTTIAFIGFGEAAQSIAGGLGGRNAA----RLAAY-DLRFNDPAASGALRARAAELGV--EPLDDVAGIACADVVLSLVV 96 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCS----EEEEE-CGGGGCTTTHHHHHHHHHHTTC--EEESSGGGGGGCSEEEECCC
T ss_pred CCeEEEECccHHHHHHHHHHHHcCCC----eEEEE-eCCCccccchHHHHHHHHHCCC--CCCCHHHHHhcCCEEEEecC
Confidence 479999999999999999999999 9 99999 9998 55666666787 56 78899999999999999
Q ss_pred cccHHHHHHHhccccCCCCEEEEecCCCCHH---HHHHhhC--CCceEEE-cCC-cHHhhcCCceEEecCCCCCHHHHHH
Q 024016 81 PQVVKDVAMQIRPLLSRKKLLVSVAAGVKLK---DLQEWTG--HSRFIRV-MPN-TPSAVGEAATVMSLGGTATEEDGEL 153 (274)
Q Consensus 81 ~~~~~~v~~~i~~~l~~~~~vis~~~g~~~~---~l~~~~~--~~~~~~~-~p~-~~~~~~~g~~~i~~~~~~~~~~~~~ 153 (274)
++...+++.++.+.++++++||+++ ++++. .+.+.+. +..++.. +.. .+.. ....++++.++ ++ +.
T Consensus 97 ~~~~~~~~~~i~~~l~~~~ivv~~s-t~~p~~~~~~~~~l~~~g~~~~d~pv~g~~~a~-~g~l~i~vgg~---~~--~~ 169 (317)
T 4ezb_A 97 GAATKAVAASAAPHLSDEAVFIDLN-SVGPDTKALAAGAIATGKGSFVEGAVMARVPPY-AEKVPILVAGR---RA--VE 169 (317)
T ss_dssp GGGHHHHHHHHGGGCCTTCEEEECC-SCCHHHHHHHHHHHHTSSCEEEEEEECSCSTTT-GGGSEEEEEST---TH--HH
T ss_pred CHHHHHHHHHHHhhcCCCCEEEECC-CCCHHHHHHHHHHHHHcCCeEEeccCCCCchhh-cCCEEEEEeCC---hH--HH
Confidence 9988888899999999999999875 45543 3444443 2233321 111 1211 22345555553 23 88
Q ss_pred HHHHhhhcCCe-EEcCc-cchhhHHHhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHH-HHHHHHhcCC
Q 024016 154 IGKLFGSVGKI-WRADE-KLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLASQTVLG-AASMVTKSGK 227 (274)
Q Consensus 154 v~~ll~~~g~~-~~~~e-~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~~Gl~~~~~~~~~~~~~~~-~~~~~~~~~~ 227 (274)
++++|+.+|.. +++++ ........++ .+.+....+..+.|+ +.+.|++++ ..+.+..+..+ .....
T Consensus 170 ~~~ll~~~g~~v~~~g~~~g~a~~~Kl~--~N~~~~~~~~~~~E~~~la~~~Gid~~-~~~~l~~~~~~~~~~~~----- 241 (317)
T 4ezb_A 170 VAERLNALGMNLEAVGETPGQASSLKMI--RSVMIKGVEALLIEALSSAERAGVTER-ILDSVQETFPGLDWRDV----- 241 (317)
T ss_dssp HHHHHHTTTCEEEEEESSTTHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHHHSTTSCHHHH-----
T ss_pred HHHHHHHhCCCeEEeCCCcCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHhcCccccHHHh-----
Confidence 99999999975 67775 3444444433 244555555555555 568999985 44444433211 11100
Q ss_pred ChHHHHHhcCCCCch----HHHHHHHHHhCCHHHHHHHHHHHH----HHHHhhc
Q 024016 228 HPGQLKDDVASPGGT----TIAGIHELEKSGFRGILMNAVVAA----AKRSREL 273 (274)
Q Consensus 228 ~~~~~~~~~~~~~g~----t~~~l~~l~~~~~~~~~~~a~~~~----~~r~~~~ 273 (274)
...+.+..+.|++. ....++..++.|+...+.+++.+. +++..+.
T Consensus 242 -~~~~~~~~~~~g~~~~KDl~~~~~~a~~~g~~~pl~~~~~~~~~~a~~~~~~~ 294 (317)
T 4ezb_A 242 -ADYYLSRTFEHGARRVTEMTEAAETIESFGLNAPMSRAACETIAAAHAAMKDQ 294 (317)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred -hhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHc
Confidence 11122222234332 222344455567776777776666 6655443
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=99.86 E-value=5.9e-20 Score=166.35 Aligned_cols=194 Identities=12% Similarity=0.168 Sum_probs=141.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc---C--ceeccCchhhcc---CCCEEEEeeC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI---G--VKVLSDNNAVVE---YSDVVVFSVK 80 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~---g--~~~~~~~~~~~~---~aDiIil~v~ 80 (274)
.+|+|||||+|.||.+|+.+|.++|| +|++| ||++++.+.+.+. + +..+.++.++++ ++|+||+|||
T Consensus 3 ~~~kIgiIGlG~MG~~lA~~L~~~G~----~V~v~-dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp 77 (484)
T 4gwg_A 3 AQADIALIGLAVMGQNLILNMNDHGF----VVCAF-NRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVK 77 (484)
T ss_dssp CCBSEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSC
T ss_pred CCCEEEEEChhHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecC
Confidence 46799999999999999999999999 99999 9999999998874 3 334577888776 5999999999
Q ss_pred cc-cHHHHHHHhccccCCCCEEEEecCCCCHH--HHHHhhC--CCceEEE-cCCcHHhhcCCceEEecCCCCCHHHHHHH
Q 024016 81 PQ-VVKDVAMQIRPLLSRKKLLVSVAAGVKLK--DLQEWTG--HSRFIRV-MPNTPSAVGEAATVMSLGGTATEEDGELI 154 (274)
Q Consensus 81 ~~-~~~~v~~~i~~~l~~~~~vis~~~g~~~~--~l~~~~~--~~~~~~~-~p~~~~~~~~g~~~i~~~~~~~~~~~~~v 154 (274)
+. .+++++.++.+.++++++||+++++.... .+.+.+. +..++.. +...+.....|..++..+ +++.++.+
T Consensus 78 ~~~~v~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg~~gA~~G~~im~GG---~~ea~~~v 154 (484)
T 4gwg_A 78 AGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGPSLMPGG---NKEAWPHI 154 (484)
T ss_dssp SSHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEEE---CGGGHHHH
T ss_pred ChHHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCCHHHHhcCCeeecCC---CHHHHHHH
Confidence 85 79999999999999999999987765432 3333332 3444443 123344445666555544 68899999
Q ss_pred HHHhhhcCC-e-------EEcCccchhhHHHhhcchHHHHHHHHHHHHHH---HHH-cCCCHHHHHHHHH
Q 024016 155 GKLFGSVGK-I-------WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVA-AGLPRELALGLAS 212 (274)
Q Consensus 155 ~~ll~~~g~-~-------~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~-~Gl~~~~~~~~~~ 212 (274)
+++|+.+|. . +++++......+.++. +.+.+..+..+.|+ +++ .|++.++..+++.
T Consensus 155 ~pll~~ig~~v~~~~~~~~~~G~~Gag~~vKmv~--N~i~~~~m~~iaEa~~l~~~~~Gld~~~l~~v~~ 222 (484)
T 4gwg_A 155 KTIFQGIAAKVGTGEPCCDWVGDEGAGHFVKMVH--NGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFE 222 (484)
T ss_dssp HHHHHHHSCBCTTSCBSBCCCEETTHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred HHHHHHhcCcccCCCceEEEECCccHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 999999985 3 4566544444444432 44555556666665 456 8999999888763
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.2e-20 Score=156.81 Aligned_cols=186 Identities=18% Similarity=0.167 Sum_probs=139.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc-------CceeccCchhhccCCCEEEEeeCcc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-------GVKVLSDNNAVVEYSDVVVFSVKPQ 82 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~-------g~~~~~~~~~~~~~aDiIil~v~~~ 82 (274)
.+||+|||+|.||++||.+|. +|+ +|++| ||++++++.+.+. +++.++++.+ +++||+||.|+|.+
T Consensus 12 ~~~V~vIG~G~MG~~iA~~la-aG~----~V~v~-d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~ 84 (293)
T 1zej_A 12 HMKVFVIGAGLMGRGIAIAIA-SKH----EVVLQ-DVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFED 84 (293)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-TTS----EEEEE-CSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSC
T ss_pred CCeEEEEeeCHHHHHHHHHHH-cCC----EEEEE-ECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCC
Confidence 479999999999999999999 999 99999 9999999888776 7777778876 88999999999865
Q ss_pred c-HH-HHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhh
Q 024016 83 V-VK-DVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFG 159 (274)
Q Consensus 83 ~-~~-~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~ 159 (274)
. ++ .++.++.+. +++++++.+++++++.+++.+. ..+++..|+..|.... ....++++..++++.++.++++++
T Consensus 85 ~~vk~~l~~~l~~~--~~~IlasntSti~~~~~a~~~~~~~r~~G~Hf~~Pv~~~-~lveiv~g~~t~~~~~~~~~~l~~ 161 (293)
T 1zej_A 85 LNTKVEVLREVERL--TNAPLCSNTSVISVDDIAERLDSPSRFLGVHWMNPPHVM-PLVEIVISRFTDSKTVAFVEGFLR 161 (293)
T ss_dssp HHHHHHHHHHHHTT--CCSCEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTC-CEEEEEECTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--CCCEEEEECCCcCHHHHHHHhhcccceEeEEecCccccC-CEEEEECCCCCCHHHHHHHHHHHH
Confidence 4 44 455666554 8888888888899998877654 2457777776665433 344566777789999999999999
Q ss_pred hcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 024016 160 SVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTV 215 (274)
Q Consensus 160 ~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~ 215 (274)
.+|+. +++++. -+. ...+...+.|++. .+.+ |+++++..+++..++
T Consensus 162 ~lGk~~v~v~d~---fi~-----Nrll~~~~~EA~~-l~~~-Gv~~e~id~~~~~g~ 208 (293)
T 1zej_A 162 ELGKEVVVCKGQ---SLV-----NRFNAAVLSEASR-MIEE-GVRAEDVDRVWKHHL 208 (293)
T ss_dssp HTTCEEEEEESS---CHH-----HHHHHHHHHHHHH-HHHH-TCCHHHHHHHHHTTH
T ss_pred HcCCeEEEeccc---ccH-----HHHHHHHHHHHHH-HHHh-CCCHHHHHHHHHhcC
Confidence 99975 777653 110 1112223344443 2334 889999888886544
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.1e-20 Score=168.21 Aligned_cols=195 Identities=11% Similarity=0.104 Sum_probs=145.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc----CceeccCchhhccC---CCEEEEeeC
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI----GVKVLSDNNAVVEY---SDVVVFSVK 80 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~----g~~~~~~~~~~~~~---aDiIil~v~ 80 (274)
|+++||||||+|.||.+|+.+|.++|+ +|.+| +|++++.+.+.+. |+..+.++.++++. +|+||+|||
T Consensus 3 m~~~~IgvIG~G~mG~~lA~~L~~~G~----~V~v~-dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp 77 (474)
T 2iz1_A 3 MAQANFGVVGMAVMGKNLALNVESRGY----TVAIY-NRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQ 77 (474)
T ss_dssp CTTBSEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCC
T ss_pred CCCCcEEEEeeHHHHHHHHHHHHhCCC----EEEEE-cCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEcc
Confidence 445799999999999999999999999 99999 9999999988874 78777888888775 999999999
Q ss_pred c-ccHHHHHHHhccccCCCCEEEEecCCCCH--HHHHHhhC--CCceEEEcCC--cHHhhcCCceEEecCCCCCHHHHHH
Q 024016 81 P-QVVKDVAMQIRPLLSRKKLLVSVAAGVKL--KDLQEWTG--HSRFIRVMPN--TPSAVGEAATVMSLGGTATEEDGEL 153 (274)
Q Consensus 81 ~-~~~~~v~~~i~~~l~~~~~vis~~~g~~~--~~l~~~~~--~~~~~~~~p~--~~~~~~~g~~~i~~~~~~~~~~~~~ 153 (274)
+ +.++++++++.+.++++++||+++++... ..+.+.++ +..++. +|. .|.....|.+++..+ +++..+.
T Consensus 78 ~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~-~pv~gg~~~a~~g~~i~~gg---~~~~~~~ 153 (474)
T 2iz1_A 78 AGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIG-TGVSGGEKGALLGPSMMPGG---QKEAYDL 153 (474)
T ss_dssp TTHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEE-EEECSHHHHHHHCCCEEEEE---CHHHHHH
T ss_pred CchHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEEC-CCCCCChhhhccCCeEEecC---CHHHHHH
Confidence 8 57999999999999999999998877643 45656564 233332 243 344455666555443 6889999
Q ss_pred HHHHhhhcCCe---------EEcCccchhhHHHhhcchHHHHHHHHHHHHHH---HHH-cCCCHHHHHHHHHH
Q 024016 154 IGKLFGSVGKI---------WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVA-AGLPRELALGLASQ 213 (274)
Q Consensus 154 v~~ll~~~g~~---------~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~-~Gl~~~~~~~~~~~ 213 (274)
++++|+.+|.. .++++........+.. +.+.+..+..+.|+ +++ .|++++++.+++..
T Consensus 154 v~~ll~~~g~~~~~dge~~~~~~g~~g~g~~~Kl~~--N~~~~~~~~~laEa~~l~~~~~Gl~~~~~~~l~~~ 224 (474)
T 2iz1_A 154 VAPIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMVH--NGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEE 224 (474)
T ss_dssp HHHHHHHHSCBCTTTCCBSBCCCBSTTHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred HHHHHHHHhcccccCCCceEEEECCccHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 99999999854 3445433333333332 34445556677776 567 79999998888753
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-20 Score=157.37 Aligned_cols=156 Identities=13% Similarity=0.158 Sum_probs=121.5
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH--------------HHHHHH-cCceeccCchhhccC
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR--------------RDAFES-IGVKVLSDNNAVVEY 71 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~--------------~~~l~~-~g~~~~~~~~~~~~~ 71 (274)
.+..+||+|||+|+||.+|+++|.++|+ +|++| +|++++ .+.+.+ .+.....++.+++++
T Consensus 16 ~~~~~kIgiIG~G~mG~alA~~L~~~G~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 90 (245)
T 3dtt_A 16 YFQGMKIAVLGTGTVGRTMAGALADLGH----EVTIG-TRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAAG 90 (245)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHHH
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHhc
Confidence 3456899999999999999999999999 99999 999987 555554 455556678888999
Q ss_pred CCEEEEeeCcccHHHHHHHh-ccccCCCCEEEEecCCC----------------C-HHHHHHhhCCCceEEEcCCcHHhh
Q 024016 72 SDVVVFSVKPQVVKDVAMQI-RPLLSRKKLLVSVAAGV----------------K-LKDLQEWTGHSRFIRVMPNTPSAV 133 (274)
Q Consensus 72 aDiIil~v~~~~~~~v~~~i-~~~l~~~~~vis~~~g~----------------~-~~~l~~~~~~~~~~~~~p~~~~~~ 133 (274)
||+||+|||++.+.+++.++ .+.+ ++++||++++++ . .+.+++.+++.++++.+++.+..+
T Consensus 91 aDvVilavp~~~~~~~~~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~~~~vv~~~~~~~a~v 169 (245)
T 3dtt_A 91 AELVVNATEGASSIAALTAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFPEAKVVKTLNTMNASL 169 (245)
T ss_dssp CSEEEECSCGGGHHHHHHHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHSTTSEEEECSTTSCHHH
T ss_pred CCEEEEccCcHHHHHHHHHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCCCCeEEEeecccCHHH
Confidence 99999999999999999888 6767 889999998643 2 356778888788999888765433
Q ss_pred c-------CCc-eEEecCCCCCHHHHHHHHHHhhhcCC-e-EEcCcc
Q 024016 134 G-------EAA-TVMSLGGTATEEDGELIGKLFGSVGK-I-WRADEK 170 (274)
Q Consensus 134 ~-------~g~-~~i~~~~~~~~~~~~~v~~ll~~~g~-~-~~~~e~ 170 (274)
. .|. +.++.++ +++..+.++++|+.+|. . +++++-
T Consensus 170 ~~~~~~a~~g~~~~~v~g~--d~~~~~~v~~ll~~~g~~~~~~~G~~ 214 (245)
T 3dtt_A 170 MVDPGRAAGGDHSVFVSGN--DAAAKAEVATLLKSLGHQDVIDLGDI 214 (245)
T ss_dssp HHCGGGTGGGCCCEEEECS--CHHHHHHHHHHHHHTTCCCEEEEESG
T ss_pred hcCccccCCCCeeEEEECC--CHHHHHHHHHHHHHcCCCceeccCcH
Confidence 2 222 2444443 68999999999999994 4 677653
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.9e-19 Score=156.29 Aligned_cols=152 Identities=12% Similarity=0.158 Sum_probs=117.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcC--------------ceeccCchhhccCCCEEE
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG--------------VKVLSDNNAVVEYSDVVV 76 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g--------------~~~~~~~~~~~~~aDiIi 76 (274)
+||+|||+|+||.+|+.+|.++|| +|++| +|++++.+.+.+.+ +...+++.++++++|+||
T Consensus 16 ~kI~iIG~G~mG~~la~~L~~~G~----~V~~~-~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVi 90 (366)
T 1evy_A 16 NKAVVFGSGAFGTALAMVLSKKCR----EVCVW-HMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIIL 90 (366)
T ss_dssp EEEEEECCSHHHHHHHHHHTTTEE----EEEEE-CSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEE
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEE
Confidence 399999999999999999999999 99999 99999988887642 455567778888999999
Q ss_pred EeeCcccHHHHHHH----hccccCC-CCEEEEecCCCCHH---HHHH----hhCCC-ceEEEcCCcHHhhcCCce-EEec
Q 024016 77 FSVKPQVVKDVAMQ----IRPLLSR-KKLLVSVAAGVKLK---DLQE----WTGHS-RFIRVMPNTPSAVGEAAT-VMSL 142 (274)
Q Consensus 77 l~v~~~~~~~v~~~----i~~~l~~-~~~vis~~~g~~~~---~l~~----~~~~~-~~~~~~p~~~~~~~~g~~-~i~~ 142 (274)
+|||++++++++.+ +.+.+++ +++||++++|+..+ .+.+ .++.. ..++..|+.+.....|.. .+..
T Consensus 91 lav~~~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~~~~v~~gp~~~~~~~~g~~~~~~~ 170 (366)
T 1evy_A 91 FVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVATGVFTCVSI 170 (366)
T ss_dssp ECCCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHHHHTTCCEEEEE
T ss_pred ECCChHHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCCcEEEEeCCChHHHHHhCCceEEEE
Confidence 99999999999998 9888888 89999999887753 2222 23321 245677888776666643 2222
Q ss_pred CCCCCHHHHHHHHHHhhhc--CCeEEcC
Q 024016 143 GGTATEEDGELIGKLFGSV--GKIWRAD 168 (274)
Q Consensus 143 ~~~~~~~~~~~v~~ll~~~--g~~~~~~ 168 (274)
+ ..+++..+.++++|+.. |..++..
T Consensus 171 ~-~~~~~~~~~v~~ll~~~g~g~~~~~~ 197 (366)
T 1evy_A 171 A-SADINVARRLQRIMSTGDRSFVCWAT 197 (366)
T ss_dssp E-CSSHHHHHHHHHHHSCTTSSEEEEEE
T ss_pred e-cCCHHHHHHHHHHhcCCCCeEEEEEc
Confidence 2 23678899999999999 6544333
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-19 Score=163.42 Aligned_cols=191 Identities=12% Similarity=0.129 Sum_probs=142.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----cCceeccCchhhc---cCCCEEEEeeCcc
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IGVKVLSDNNAVV---EYSDVVVFSVKPQ 82 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-----~g~~~~~~~~~~~---~~aDiIil~v~~~ 82 (274)
|||+|||+|.||++|+.+|.++|+ +|++| +|++++.+.+.+ .|+..+.++.+++ +++|+||+|||+.
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~G~----~V~v~-dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~ 77 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDHGF----VVCAF-NRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAG 77 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTT
T ss_pred CeEEEEChHHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCCh
Confidence 689999999999999999999999 99999 999999999887 6777778888876 4899999999985
Q ss_pred -cHHHHHHHhccccCCCCEEEEecCCCCH--HHHHHhhC--CCceEEEcCC--cHHhhcCCceEEecCCCCCHHHHHHHH
Q 024016 83 -VVKDVAMQIRPLLSRKKLLVSVAAGVKL--KDLQEWTG--HSRFIRVMPN--TPSAVGEAATVMSLGGTATEEDGELIG 155 (274)
Q Consensus 83 -~~~~v~~~i~~~l~~~~~vis~~~g~~~--~~l~~~~~--~~~~~~~~p~--~~~~~~~g~~~i~~~~~~~~~~~~~v~ 155 (274)
.+++++.++.+.++++++||+++++... ..+.+.++ +..++. +|. .+...+.|.+++..+ +++..+.++
T Consensus 78 ~~v~~vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~-~pv~g~~~~a~~g~~i~~gg---~~e~~~~v~ 153 (482)
T 2pgd_A 78 QAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVG-SGVSGGEDGARYGPSLMPGG---NKEAWPHIK 153 (482)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-EEEESHHHHHHHCCEEEEEE---CTTTHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeC-CCCCCChhhhccCCeEEeCC---CHHHHHHHH
Confidence 7999999999999999999998887754 34555443 233442 343 345556676555444 577899999
Q ss_pred HHhhhcCCeE--------EcCccchhhHHHhhcchHHHHHHHHHHHHHH---HHHc-CCCHHHHHHHHH
Q 024016 156 KLFGSVGKIW--------RADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAA-GLPRELALGLAS 212 (274)
Q Consensus 156 ~ll~~~g~~~--------~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~~-Gl~~~~~~~~~~ 212 (274)
++|+.+|..+ ++++........+.. +.+.+..+..+.|+ +++. |++++++.+++.
T Consensus 154 ~ll~~~g~~v~d~~~~~~~~g~~g~g~~~Kl~~--N~~~~~~~~~i~Ea~~l~~~~~G~~~~~~~~~~~ 220 (482)
T 2pgd_A 154 AIFQGIAAKVGTGEPCCDWVGDDGAGHFVKMVH--NGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFE 220 (482)
T ss_dssp HHHHHHSCBCTTSCBSCCCCEETTHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred HHHHHhhhhccCCCcceEEECCCcHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHH
Confidence 9999999642 344433333333322 34445556677776 5677 999998888875
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-20 Score=159.56 Aligned_cols=247 Identities=11% Similarity=0.078 Sum_probs=157.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc---Cc----eeccCchhhccCCCEEEEeeCccc
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI---GV----KVLSDNNAVVEYSDVVVFSVKPQV 83 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~---g~----~~~~~~~~~~~~aDiIil~v~~~~ 83 (274)
|||+|||+|+||++|+.+|.++|+ +|++| +|++++.+.+... |. .+..+..+.++++|+||+|||++.
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~----~V~~~-~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~~~~ 75 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQGH----EVQGW-LRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQ 75 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGGG
T ss_pred CeEEEECcCHHHHHHHHHHHhCCC----CEEEE-EcCccceeeEEEEcCCCceeeeeeeecCccccCCCCEEEEEecHHh
Confidence 589999999999999999999999 99999 9998766544332 21 112233566789999999999999
Q ss_pred HHHHHHHhccccCCCCEEEEecCCCCH-HHHHHhhCC----C---ceEEEcCCcHHhhcCCceEEecCCCCCHHHHHHHH
Q 024016 84 VKDVAMQIRPLLSRKKLLVSVAAGVKL-KDLQEWTGH----S---RFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIG 155 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~~~g~~~-~~l~~~~~~----~---~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~ 155 (274)
++++++++.+.++++++||++++|+.. +.+++.++. . ...+..| .+...+.|.+.+.... .+++..+.++
T Consensus 76 ~~~v~~~l~~~l~~~~~vv~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~p-~~~~~~~g~~~i~~~~-~~~~~~~~~~ 153 (291)
T 1ks9_A 76 VSDAVKSLASTLPVTTPILLIHNGMGTIEELQNIQQPLLMGTTTHAARRDGN-VIIHVANGITHIGPAR-QQDGDYSYLA 153 (291)
T ss_dssp HHHHHHHHHTTSCTTSCEEEECSSSCTTGGGTTCCSCEEEEEECCEEEEETT-EEEEEECCCEEEEESS-GGGTTCTHHH
T ss_pred HHHHHHHHHhhCCCCCEEEEecCCCCcHHHHHHhcCCeEEEEEeEccEEcCC-EEEEecccceEEccCC-CCcchHHHHH
Confidence 999999999999899999999999865 466665553 0 1123345 4445566665554322 2456778999
Q ss_pred HHhhhcCCeEEcCcc-------------chhhHHHhhcchHHHH----HHHHHHHHH---HHHHcCCCH--HHHHHHHHH
Q 024016 156 KLFGSVGKIWRADEK-------------LFDAITGLSGSGPAYI----FLAIEALAD---GGVAAGLPR--ELALGLASQ 213 (274)
Q Consensus 156 ~ll~~~g~~~~~~e~-------------~~~~~~a~~~~~~~~~----~~~~~~l~e---~~~~~Gl~~--~~~~~~~~~ 213 (274)
++|+.+|..++..++ .+|.++++.++....+ ..+...+.| .+++.|++. +...+.+..
T Consensus 154 ~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~n~~tal~~~~~g~~~~~~~~~~~~~~E~~~va~a~G~~~~~~~~~~~~~~ 233 (291)
T 1ks9_A 154 DILQTVLPDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREGHHTSAEDLRDYVMQ 233 (291)
T ss_dssp HHHHTTSSCEEECTTHHHHHHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHhcCCCCeecHHHHHHHHHHHeeeeeecHHHHHHCCCchHHHhHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 999999976444444 4577777777643321 122233333 356789875 444444433
Q ss_pred HHHHHHHHHHhcCCChHHHHHhc---CC-CCchHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 024016 214 TVLGAASMVTKSGKHPGQLKDDV---AS-PGGTTIAGIHELEKSGFRGILMNAVVAAAKRS 270 (274)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~---~~-~~g~t~~~l~~l~~~~~~~~~~~a~~~~~~r~ 270 (274)
.+..+ ....+.++.+.. .+ -.......++.-++.|+...+.+.+.+.++..
T Consensus 234 ~~~~~------~~~~ssm~~d~~~g~~~e~~~~~g~~~~~a~~~gv~~P~~~~~~~~~~~~ 288 (291)
T 1ks9_A 234 VIDAT------AENISSMLQDIRALRHTEIDYINGFLLRRARAHGIAVPENTRLFEMVKRK 288 (291)
T ss_dssp HHHHT------TTCCCHHHHHHHTTCCCSGGGTHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred HHhcC------CCCCChHHHHHHcCCccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 32211 111223332211 11 11223344555666677777777777766543
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.2e-19 Score=154.15 Aligned_cols=244 Identities=15% Similarity=0.137 Sum_probs=158.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee--------------ccCchhhccCCCEEE
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV--------------LSDNNAVVEYSDVVV 76 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~--------------~~~~~~~~~~aDiIi 76 (274)
|||+|||+|+||++++..|.++|+ +|++| +|++ .+.+.+.|+.+ .++. +.+..+|+||
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~----~V~~~-~r~~--~~~i~~~g~~~~~~~g~~~~~~~~~~~~~-~~~~~~D~vi 74 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGE----DVHFL-LRRD--YEAIAGNGLKVFSINGDFTLPHVKGYRAP-EEIGPMDLVL 74 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSC----CEEEE-CSTT--HHHHHHTCEEEEETTCCEEESCCCEESCH-HHHCCCSEEE
T ss_pred CEEEEECcCHHHHHHHHHHHHCCC----eEEEE-EcCc--HHHHHhCCCEEEcCCCeEEEeeceeecCH-HHcCCCCEEE
Confidence 699999999999999999999999 99999 9986 36676666432 1233 3467899999
Q ss_pred EeeCcccHHHHHHHhccccCCCCEEEEecCCCC-HHHHHHhhCCCceEEEc---------CCcHHhhcCCceEEecCCCC
Q 024016 77 FSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVK-LKDLQEWTGHSRFIRVM---------PNTPSAVGEAATVMSLGGTA 146 (274)
Q Consensus 77 l~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~-~~~l~~~~~~~~~~~~~---------p~~~~~~~~g~~~i~~~~~~ 146 (274)
+|||+++++++++++.+.+.++++||++.+|+. .+.+++.++..++++.+ |+...+.+.|.+.+...+..
T Consensus 75 lavk~~~~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~l~~~~~~~~v~~~~~~~~a~~~~p~~v~~~~~g~~~ig~~~~~ 154 (312)
T 3hn2_A 75 VGLKTFANSRYEELIRPLVEEGTQILTLQNGLGNEEALATLFGAERIIGGVAFLCSNRGEPGEVHHLGAGRIILGEFLPR 154 (312)
T ss_dssp ECCCGGGGGGHHHHHGGGCCTTCEEEECCSSSSHHHHHHHHTCGGGEEEEEEEEECCBCSSSEEEECEEEEEEEEESSCC
T ss_pred EecCCCCcHHHHHHHHhhcCCCCEEEEecCCCCcHHHHHHHCCCCcEEEEEEEeeeEEcCCcEEEECCCCeEEEecCCCC
Confidence 999999999999999999999999999999997 56788888855666554 44443444444444333333
Q ss_pred CHHHHHHHHHHhhhcCCeEEcCccc-------------hhhHHHhhcchHH-------HHHHHHHHHHHH---HHHcC--
Q 024016 147 TEEDGELIGKLFGSVGKIWRADEKL-------------FDAITGLSGSGPA-------YIFLAIEALADG---GVAAG-- 201 (274)
Q Consensus 147 ~~~~~~~v~~ll~~~g~~~~~~e~~-------------~~~~~a~~~~~~~-------~~~~~~~~l~e~---~~~~G-- 201 (274)
+.+..+.+.++|+..|..++.+++. ++.++++.++... ....+...+.|. +.+.|
T Consensus 155 ~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~G~l~~~~~~~~l~~~~~~E~~~va~a~G~~ 234 (312)
T 3hn2_A 155 DTGRIEELAAMFRQAGVDCRTTDDLKRARWEKLVWNIPFNGLCALLQQPVNLILARDVSRKLVRGIMLEVIAGANAQGLA 234 (312)
T ss_dssp CSHHHHHHHHHHHHTTCCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSHHHHHHHHHHHHHHHHHHHTSCCS
T ss_pred ccHHHHHHHHHHHhCCCCcEEChHHHHHHHHHHHHHHhHHHHHHHHCCCHHHHHhChhHHHHHHHHHHHHHHHHHHcCCc
Confidence 4677788999999988766666654 5667777776443 222222233333 45788
Q ss_pred CCHH-HHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHH-----HHHHHHHhCCHHHHHHHHHHHHHHH
Q 024016 202 LPRE-LALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTI-----AGIHELEKSGFRGILMNAVVAAAKR 269 (274)
Q Consensus 202 l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~-----~~l~~l~~~~~~~~~~~a~~~~~~r 269 (274)
++.+ ...+.+...... .....+.++.|.. ..+.+-. ..++.-++.|+...+.+.+.+.++.
T Consensus 235 ~~~~~~~~~~~~~~~~~------~~~~~sSM~qD~~-~gr~tEid~i~G~vv~~a~~~gv~~P~~~~l~~ll~~ 301 (312)
T 3hn2_A 235 TFIADGYVDDMLEFTDA------MGEYKPSMEIDRE-EGRPLEIAAIFRTPLAYGAREGIAMPRVEMLATLLEQ 301 (312)
T ss_dssp SCCCTTHHHHHHHHHTT------SCSCCCHHHHHHH-TTCCCCHHHHTHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHhc------CCCCCchHHHHHH-hCCCccHHHHhhHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 6533 222222211111 0112345554433 2222222 2345556677777777777666554
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.7e-20 Score=150.58 Aligned_cols=167 Identities=17% Similarity=0.249 Sum_probs=132.7
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cC-------ceeccCchhhccCCCEEEEeeCc
Q 024016 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG-------VKVLSDNNAVVEYSDVVVFSVKP 81 (274)
Q Consensus 11 ~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g-------~~~~~~~~~~~~~aDiIil~v~~ 81 (274)
|||+||| +|.||+++++.|.+.|+ +|++| +|++++.+.+.+ .+ +. ..+..++++++|+||+|+|+
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~Vi~~~~~ 74 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGH----EIVVG-SRREEKAEAKAAEYRRIAGDASIT-GMKNEDAAEACDIAVLTIPW 74 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC----EEEEE-ESSHHHHHHHHHHHHHHHSSCCEE-EEEHHHHHHHCSEEEECSCH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHHhccccccCCCC-hhhHHHHHhcCCEEEEeCCh
Confidence 5899999 99999999999999998 99999 999988877765 23 33 34566778899999999999
Q ss_pred ccHHHHHHHhccccCCCCEEEEecCCCC--------------HHHHHHhhCCCceEEEcCCcHHhhcCC------ceEEe
Q 024016 82 QVVKDVAMQIRPLLSRKKLLVSVAAGVK--------------LKDLQEWTGHSRFIRVMPNTPSAVGEA------ATVMS 141 (274)
Q Consensus 82 ~~~~~v~~~i~~~l~~~~~vis~~~g~~--------------~~~l~~~~~~~~~~~~~p~~~~~~~~g------~~~i~ 141 (274)
+.+++++.++.+.+ ++++++++++|++ .+.+++.+++.++++.+|+.+.....+ .+.++
T Consensus 75 ~~~~~~~~~l~~~~-~~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 153 (212)
T 1jay_A 75 EHAIDTARDLKNIL-REKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLESEKVVSALHTIPAARFANLDEKFDWDVPV 153 (212)
T ss_dssp HHHHHHHHHTHHHH-TTSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTCSCEEECCTTCCHHHHHCTTCCCCEEEEE
T ss_pred hhHHHHHHHHHHHc-CCCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCCCeEEEEccchHHHHhhCcCCCCCccEEE
Confidence 99999998887777 5889999998876 578888887678899887765544332 45566
Q ss_pred cCCCCCHHHHHHHHHHhhhc-CCe-EEcCccchhhHHHhhcchHHHHHH
Q 024016 142 LGGTATEEDGELIGKLFGSV-GKI-WRADEKLFDAITGLSGSGPAYIFL 188 (274)
Q Consensus 142 ~~~~~~~~~~~~v~~ll~~~-g~~-~~~~e~~~~~~~a~~~~~~~~~~~ 188 (274)
+++ +++..+.++++|+.+ |.. +++++ .+....+.+++|.|++.
T Consensus 154 ~g~--~~~~~~~v~~l~~~~~G~~~~~~~~--~~~a~~~k~~~~~~~~~ 198 (212)
T 1jay_A 154 CGD--DDESKKVVMSLISEIDGLRPLDAGP--LSNSRLVESLTPLILNI 198 (212)
T ss_dssp EES--CHHHHHHHHHHHHHSTTEEEEEEES--GGGHHHHHTHHHHHHHH
T ss_pred ECC--cHHHHHHHHHHHHHcCCCCceeccc--hhHHHHhcchHHHHHHH
Confidence 554 588899999999999 975 66665 56666777777776654
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=7e-19 Score=154.56 Aligned_cols=155 Identities=19% Similarity=0.222 Sum_probs=119.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCC-------CCCCCcEEEEeCCCHH-----HHHHHHHc--------------Cceec
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSG-------VLPPDRICTAVHSNLK-----RRDAFESI--------------GVKVL 62 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g-------~~~~~~v~v~~~r~~~-----~~~~l~~~--------------g~~~~ 62 (274)
.+|||+|||+|+||++|+..|.++| + +|++| +|+++ +.+.+.+. ++...
T Consensus 7 ~~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~----~V~~~-~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
T 1x0v_A 7 ASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDP----RVTMW-VFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAV 81 (354)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHHHHHCTTEEE----EEEEE-CCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCC----eEEEE-EcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEE
Confidence 4579999999999999999999999 8 99999 99988 77777642 23445
Q ss_pred cCchhhccCCCEEEEeeCcccHHHHHHHhccccCCCCEEEEecCCCCH---------HHHHHhhCCCceEEEcCCcHHhh
Q 024016 63 SDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL---------KDLQEWTGHSRFIRVMPNTPSAV 133 (274)
Q Consensus 63 ~~~~~~~~~aDiIil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~---------~~l~~~~~~~~~~~~~p~~~~~~ 133 (274)
+++.++++++|+||+|||++.+++++.++.+.++++++||++++|+.. +.+.+.++....++..|+.+...
T Consensus 82 ~~~~~~~~~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~v~~gp~~a~~v 161 (354)
T 1x0v_A 82 PDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLGIPMSVLMGANIASEV 161 (354)
T ss_dssp SSHHHHHTTCSEEEECCCGGGHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHTCCEEEEECSCCHHHH
T ss_pred cCHHHHHcCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHcCCCEEEEECCCcHHHH
Confidence 677778889999999999999999999999989899999999988763 22344444223567789988777
Q ss_pred cCCc-eEEecCCCCCHHHHHHHHHHhhhcCCeEEcCc
Q 024016 134 GEAA-TVMSLGGTATEEDGELIGKLFGSVGKIWRADE 169 (274)
Q Consensus 134 ~~g~-~~i~~~~~~~~~~~~~v~~ll~~~g~~~~~~e 169 (274)
..|. +.++.+ ..+++..+.++++|+..|..++..+
T Consensus 162 ~~g~~~~~~~~-~~~~~~~~~v~~ll~~~g~~~~~~~ 197 (354)
T 1x0v_A 162 ADEKFCETTIG-CKDPAQGQLLKELMQTPNFRITVVQ 197 (354)
T ss_dssp HTTCCEEEEEE-CSSHHHHHHHHHHHCBTTEEEEEES
T ss_pred HhcCCceEEEE-ECCHHHHHHHHHHhCCCCEEEEEcC
Confidence 6664 333332 2467888999999999996544333
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.2e-19 Score=162.12 Aligned_cols=190 Identities=16% Similarity=0.099 Sum_probs=140.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----------cC-------------ceeccC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------IG-------------VKVLSD 64 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-----------~g-------------~~~~~~ 64 (274)
+.+||+|||+|.||++||..|.++|+ +|++| ||++++++.+.+ .| ++..++
T Consensus 4 ~~~kVgVIGaG~MG~~IA~~la~aG~----~V~l~-D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~ 78 (483)
T 3mog_A 4 NVQTVAVIGSGTMGAGIAEVAASHGH----QVLLY-DISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTD 78 (483)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECC
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC----eEEEE-ECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCC
Confidence 45799999999999999999999999 99999 999998877543 22 344555
Q ss_pred chhhccCCCEEEEeeCcc--cHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEe
Q 024016 65 NNAVVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMS 141 (274)
Q Consensus 65 ~~~~~~~aDiIil~v~~~--~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~ 141 (274)
. +.+++||+||+|||++ ..++++.++.+.+++++++++.+++++++.+++.+. ..++++.||..|..... ...++
T Consensus 79 ~-~~~~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i~~ia~~~~~p~~~ig~hf~~Pa~v~~-Lvevv 156 (483)
T 3mog_A 79 I-HALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIAAEIKNPERVAGLHFFNPAPVMK-LVEVV 156 (483)
T ss_dssp G-GGGGGCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTTTSSSGGGEEEEEECSSTTTCC-EEEEE
T ss_pred H-HHhcCCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCHHHHHHHccCccceEEeeecChhhhCC-eEEEe
Confidence 5 4688999999999876 346888999888999999889899999998887765 35788999988776543 45567
Q ss_pred cCCCCCHHHHHHHHHHhhhcCCe-EEcCccchhhHHHhhcchHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHH
Q 024016 142 LGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFL-AIEALADGGVAAGLPRELALGLASQ 213 (274)
Q Consensus 142 ~~~~~~~~~~~~v~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~-~~~~l~e~~~~~Gl~~~~~~~~~~~ 213 (274)
.+...+++.++.+.++++.+|+. +++++.. . .. .+.++.. +.+++ ..+.+.+.++++..+.+..
T Consensus 157 ~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d~~-G----fi--~Nr~l~~~~~Ea~-~l~~~g~~~~~~id~a~~~ 222 (483)
T 3mog_A 157 SGLATAAEVVEQLCELTLSWGKQPVRCHSTP-G----FI--VNRVARPYYSEAW-RALEEQVAAPEVIDAALRD 222 (483)
T ss_dssp ECSSCCHHHHHHHHHHHHHTTCEEEEEESCT-T----TT--HHHHTHHHHHHHH-HHHHTTCSCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhCCEEEEEeccC-c----ch--HHHHHHHHHHHHH-HHHHhCCCCHHHHHHHHHh
Confidence 77778999999999999999985 6665421 0 10 1122211 22222 2244566677777666653
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-18 Score=155.37 Aligned_cols=189 Identities=13% Similarity=0.106 Sum_probs=140.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH--------HHHHcC-------------ceeccCchh
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD--------AFESIG-------------VKVLSDNNA 67 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~--------~l~~~g-------------~~~~~~~~~ 67 (274)
..+||+|||+|.||++||..|.++|+ +|++| |+++++.. ++.+.| ++.+++. +
T Consensus 53 ~i~kVaVIGaG~MG~~IA~~la~aG~----~V~l~-D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl-~ 126 (460)
T 3k6j_A 53 DVNSVAIIGGGTMGKAMAICFGLAGI----ETFLV-VRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDF-H 126 (460)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCG-G
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCCC----eEEEE-ECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCH-H
Confidence 45799999999999999999999999 99999 99998432 233333 2455666 4
Q ss_pred hccCCCEEEEeeCcc--cHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEecCC
Q 024016 68 VVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGG 144 (274)
Q Consensus 68 ~~~~aDiIil~v~~~--~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~~~ 144 (274)
.+++||+||+|||.+ ..++++.++.+.++++++++|.++++++..+++.++ ..+++..||..|..... ...++++.
T Consensus 127 al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~~ia~~~~~p~r~iG~HffnPv~~m~-LvEIv~g~ 205 (460)
T 3k6j_A 127 KLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISSVLRDPSNLVGIHFFNPANVIR-LVEIIYGS 205 (460)
T ss_dssp GCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHHTTSSSGGGEEEEECCSSTTTCC-EEEEECCS
T ss_pred HHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHHHHHHhccCCcceEEEEecchhhhCC-EEEEEeCC
Confidence 688999999999854 356788899999999999999989999999887775 35789999988876543 34466777
Q ss_pred CCCHHHHHHHHHHhhhcCCe-EEcCccchhhHHHhhcchHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHH
Q 024016 145 TATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYI-FLAIEALADGGVAAGLPRELALGLAS 212 (274)
Q Consensus 145 ~~~~~~~~~v~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~-~~~~~~l~e~~~~~Gl~~~~~~~~~~ 212 (274)
..++++++.+.++++.+|+. +++.+. -.-+ .+.++ ..+.+++. .+.+.|+++++..+++.
T Consensus 206 ~Ts~e~~~~~~~l~~~lGk~~v~v~d~-pGfi------~Nril~~~~~EA~~-l~~~~Ga~~e~ID~a~~ 267 (460)
T 3k6j_A 206 HTSSQAIATAFQACESIKKLPVLVGNC-KSFV------FNRLLHVYFDQSQK-LMYEYGYLPHQIDKIIT 267 (460)
T ss_dssp SCCHHHHHHHHHHHHHTTCEEEEESSC-CHHH------HHHHHHHHHHHHHH-HHHTSCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCEEEEEecc-cHHH------HHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHH
Confidence 78999999999999999986 666642 1110 01111 22223322 23478999998888775
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.8e-19 Score=155.52 Aligned_cols=154 Identities=15% Similarity=0.126 Sum_probs=118.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC-------CCCCCcEEEEeCCCHH-----HHHHHHHc--------------Cceecc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSG-------VLPPDRICTAVHSNLK-----RRDAFESI--------------GVKVLS 63 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g-------~~~~~~v~v~~~r~~~-----~~~~l~~~--------------g~~~~~ 63 (274)
+|||+|||+|+||++|+..|.++| + +|++| +|+++ +.+.+.+. ++..++
T Consensus 21 ~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~----~V~~~-~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ 95 (375)
T 1yj8_A 21 PLKISILGSGNWASAISKVVGTNAKNNYLFEN----EVRMW-IRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHS 95 (375)
T ss_dssp CBCEEEECCSHHHHHHHHHHHHHHHHCTTBCS----CEEEE-CCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEES
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCccCCCCC----eEEEE-ECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEEC
Confidence 368999999999999999999999 8 99999 99988 78777652 345566
Q ss_pred CchhhccCCCEEEEeeCcccHHHHHHHhcc----ccCCCCEEEEecCCCCH-----HHH----HHhhCCCceEEEcCCcH
Q 024016 64 DNNAVVEYSDVVVFSVKPQVVKDVAMQIRP----LLSRKKLLVSVAAGVKL-----KDL----QEWTGHSRFIRVMPNTP 130 (274)
Q Consensus 64 ~~~~~~~~aDiIil~v~~~~~~~v~~~i~~----~l~~~~~vis~~~g~~~-----~~l----~~~~~~~~~~~~~p~~~ 130 (274)
++.++++++|+||+|||++++++++.++.+ .+++++++|++++|++. +.+ .+.++....++..|+.+
T Consensus 96 ~~~ea~~~aDvVilav~~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~~~~~~v~~gp~~a 175 (375)
T 1yj8_A 96 DLASVINDADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISDFLNIPCSALSGANIA 175 (375)
T ss_dssp STHHHHTTCSEEEECCCHHHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHHHSSSCEEEEECSCCH
T ss_pred CHHHHHcCCCEEEEcCCHHHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHHHcCCCEEEEeCCchH
Confidence 777888999999999999999999999998 88899999999988765 222 33333123456778888
Q ss_pred HhhcCCceEEecCCCCCHHHHHHHHHHhhhcCCeEEcC
Q 024016 131 SAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRAD 168 (274)
Q Consensus 131 ~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~~~~~ 168 (274)
.....|....+.....+++..+.++++|+..|..++..
T Consensus 176 ~~v~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~~~~~~ 213 (375)
T 1yj8_A 176 MDVAMENFSEATIGGNDKDSLVIWQRVFDLPYFKINCV 213 (375)
T ss_dssp HHHHTTCCEEEEEECSCHHHHHHHHHHHCBTTEEEEEE
T ss_pred HHHHhCCCeEEEEecCCHHHHHHHHHHhCCCCeEEEEe
Confidence 77666653222111236788899999999998654433
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.82 E-value=6.5e-19 Score=153.51 Aligned_cols=149 Identities=15% Similarity=0.203 Sum_probs=117.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC--CHHHHHHHHHcCc-----------eecc--CchhhccCCCEE
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS--NLKRRDAFESIGV-----------KVLS--DNNAVVEYSDVV 75 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r--~~~~~~~l~~~g~-----------~~~~--~~~~~~~~aDiI 75 (274)
|||+|||+|+||++++..|.++|+ +|++| +| ++++.+.+.+.|. ...+ ++.++++++|+|
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~v 75 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDNGN----EVRIW-GTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVV 75 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCC----EEEEE-CCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC----eEEEE-EccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEE
Confidence 589999999999999999999999 99999 99 9999988887553 4444 566778899999
Q ss_pred EEeeCcccHHHHHHHhccccCCCCEEEEecCCC---C---HHHHHHhhCC------CceEEEcCCcHHhhcCCc-eEEec
Q 024016 76 VFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGV---K---LKDLQEWTGH------SRFIRVMPNTPSAVGEAA-TVMSL 142 (274)
Q Consensus 76 il~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~---~---~~~l~~~~~~------~~~~~~~p~~~~~~~~g~-~~i~~ 142 (274)
|+|||++.+++++.++.+ ++++++||++++|+ + .+.+.+.++. ....+..|+.+...+.|. +.++.
T Consensus 76 i~~v~~~~~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~~~~~~~g~~~~~~~ 154 (335)
T 1txg_A 76 LLGVSTDGVLPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREVAKRMPTTVVF 154 (335)
T ss_dssp EECSCGGGHHHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHHHTTCCEEEEE
T ss_pred EEcCChHHHHHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEEEECCCcHHHHHccCCcEEEE
Confidence 999999999999999999 98899999998888 3 3566666542 124566788877666554 33333
Q ss_pred CCCCCHHHHHHHHHHhhhcCCeEE
Q 024016 143 GGTATEEDGELIGKLFGSVGKIWR 166 (274)
Q Consensus 143 ~~~~~~~~~~~v~~ll~~~g~~~~ 166 (274)
+. .+++..+.++++|+..|..++
T Consensus 155 ~~-~~~~~~~~~~~ll~~~g~~~~ 177 (335)
T 1txg_A 155 SS-PSESSANKMKEIFETEYFGVE 177 (335)
T ss_dssp EC-SCHHHHHHHHHHHCBTTEEEE
T ss_pred Ee-CCHHHHHHHHHHhCCCcEEEE
Confidence 32 367889999999999886533
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.82 E-value=6.8e-19 Score=160.23 Aligned_cols=191 Identities=13% Similarity=0.142 Sum_probs=140.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc-C-------ceeccCchhhcc---CCCEEEEee
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-G-------VKVLSDNNAVVE---YSDVVVFSV 79 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~-g-------~~~~~~~~~~~~---~aDiIil~v 79 (274)
|||||||+|.||++|+.+|.++|+ +|++| +|++++.+.+.+. | +..+.++.++++ ++|+||+||
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~G~----~V~v~-dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaV 76 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEKGF----KVAVF-NRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILV 76 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECC
T ss_pred CEEEEEChHHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEec
Confidence 589999999999999999999999 99999 9999999888763 6 666778878776 499999999
Q ss_pred Ccc-cHHHHHHHhccccCCCCEEEEecCCCCH--HHHHHhhC--CCceEEEcCC--cHHhhcCCceEEecCCCCCHHHHH
Q 024016 80 KPQ-VVKDVAMQIRPLLSRKKLLVSVAAGVKL--KDLQEWTG--HSRFIRVMPN--TPSAVGEAATVMSLGGTATEEDGE 152 (274)
Q Consensus 80 ~~~-~~~~v~~~i~~~l~~~~~vis~~~g~~~--~~l~~~~~--~~~~~~~~p~--~~~~~~~g~~~i~~~~~~~~~~~~ 152 (274)
|+. .++++++++.+.++++++||+++++... +.+.+.++ +..++. +|. .|.....|.+++..+ +++..+
T Consensus 77 p~~~~v~~vl~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~-~pv~gg~~~a~~g~~i~~gg---~~~~~~ 152 (478)
T 1pgj_A 77 QAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLG-MGISGGEEGARKGPAFFPGG---TLSVWE 152 (478)
T ss_dssp CCSHHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEE-EEEESHHHHHHHCCEEEEEE---CHHHHH
T ss_pred CChHHHHHHHHHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEE-eeccCCHHHHhcCCeEeccC---CHHHHH
Confidence 985 7999999999989999999998887743 34555553 233332 232 344445566555443 688899
Q ss_pred HHHHHhhhcCCe--------EEcCccchhhHHHhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHH
Q 024016 153 LIGKLFGSVGKI--------WRADEKLFDAITGLSGSGPAYIFLAIEALADG---GVAAGLPRELALGLAS 212 (274)
Q Consensus 153 ~v~~ll~~~g~~--------~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~~~Gl~~~~~~~~~~ 212 (274)
.++++|+.+|.. .++++........+.. +.+.+..+..+.|+ +.+.|++++++.+++.
T Consensus 153 ~v~~ll~~~g~~~~dg~~~v~~~g~~G~g~~~Kl~~--N~~~~~~~~~i~Ea~~l~~~~G~~~~~~~~l~~ 221 (478)
T 1pgj_A 153 EIRPIVEAAAAKADDGRPCVTMNGSGGAGSCVKMYH--NSGEYAILQIWGEVFDILRAMGLNNDEVAAVLE 221 (478)
T ss_dssp HHHHHHHHHSCBCTTSCBSCCCCCSTTHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHhcccccCCCeeEEEeCCchHHHHHhhHH--HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999853 4555544333333322 33444445556665 5689999998888876
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.7e-21 Score=156.62 Aligned_cols=150 Identities=14% Similarity=0.223 Sum_probs=119.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~ 88 (274)
..|||+|||+|+||++|+++|.+.|+ +|++| +|+++ .+.+...|+... ++.++++++|+||+|||++++++++
T Consensus 18 ~~~~I~iIG~G~mG~~la~~L~~~G~----~V~~~-~r~~~-~~~~~~~g~~~~-~~~~~~~~aDvVilav~~~~~~~v~ 90 (201)
T 2yjz_A 18 KQGVVCIFGTGDFGKSLGLKMLQCGY----SVVFG-SRNPQ-VSSLLPRGAEVL-CYSEAASRSDVIVLAVHREHYDFLA 90 (201)
Confidence 35799999999999999999999998 99999 99987 555555676655 6778888999999999998888887
Q ss_pred HHhccccCCCCEEEEecCCCC--------HHHHHHhhCCCceEEEcCCcHHhhcC-Cc-----eEEecCCCCCHHHHHHH
Q 024016 89 MQIRPLLSRKKLLVSVAAGVK--------LKDLQEWTGHSRFIRVMPNTPSAVGE-AA-----TVMSLGGTATEEDGELI 154 (274)
Q Consensus 89 ~~i~~~l~~~~~vis~~~g~~--------~~~l~~~~~~~~~~~~~p~~~~~~~~-g~-----~~i~~~~~~~~~~~~~v 154 (274)
++.+ ..++++||++++|++ .+.+++.+++.++++.+|+.|..... |. +.++.+. +++.++.+
T Consensus 91 -~l~~-~~~~~ivI~~~~G~~~~~~~~~~~~~l~~~~~~~~vvra~~n~~a~~~~~g~l~g~~~~~~~g~--~~~~~~~v 166 (201)
T 2yjz_A 91 -ELAD-SLKGRVLIDVSNNQKMNQYPESNAEYLAQLVPGAHVVKAFNTISAWALQSGTLDASRQVFVCGN--DSKAKDRV 166 (201)
Confidence 5544 347889999999986 36677777767899999999887654 44 1344443 57888999
Q ss_pred HHHhhhcCCe-EEcCc
Q 024016 155 GKLFGSVGKI-WRADE 169 (274)
Q Consensus 155 ~~ll~~~g~~-~~~~e 169 (274)
+++|+.+|.. +++++
T Consensus 167 ~~ll~~~G~~~~~~G~ 182 (201)
T 2yjz_A 167 MDIARTLGLTPLDQGS 182 (201)
Confidence 9999999965 66654
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.9e-18 Score=148.13 Aligned_cols=168 Identities=19% Similarity=0.257 Sum_probs=120.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-------------ccCchhhccCCCEE
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-------------LSDNNAVVEYSDVV 75 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~-------------~~~~~~~~~~aDiI 75 (274)
++|||+|||+|+||++++..|.++|+ +|++| +|+ ++.+.+.+.|+.+ .+++.+ +.++|+|
T Consensus 2 ~~mkI~IiGaG~~G~~~a~~L~~~g~----~V~~~-~r~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~V 74 (335)
T 3ghy_A 2 SLTRICIVGAGAVGGYLGARLALAGE----AINVL-ARG-ATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVV 74 (335)
T ss_dssp CCCCEEEESCCHHHHHHHHHHHHTTC----CEEEE-CCH-HHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC----EEEEE-ECh-HHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEE
Confidence 46899999999999999999999999 99999 996 6777777766543 234444 5889999
Q ss_pred EEeeCcccHHHHHHHhccccCCCCEEEEecCCCC--------------------HHHHHHhhCCCceEEE---------c
Q 024016 76 VFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVK--------------------LKDLQEWTGHSRFIRV---------M 126 (274)
Q Consensus 76 il~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~--------------------~~~l~~~~~~~~~~~~---------~ 126 (274)
|+|||+++++++++++.+.++++++||++++|++ .+.+.+.+|..+++.. -
T Consensus 75 ilavk~~~~~~~~~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~v~~gv~~~~a~~~~ 154 (335)
T 3ghy_A 75 IVAVKAPALESVAAGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPTRHVLGCVVHLTCATVS 154 (335)
T ss_dssp EECCCHHHHHHHHGGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCGGGEEEEEECCCEEESS
T ss_pred EEeCCchhHHHHHHHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCcccEEEEEEEEEEEEcC
Confidence 9999999999999999999999999999999963 2357777775454432 1
Q ss_pred CCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCCeEEcCcc-------------chhhHHHhhcchH
Q 024016 127 PNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEK-------------LFDAITGLSGSGP 183 (274)
Q Consensus 127 p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~~~~~e~-------------~~~~~~a~~~~~~ 183 (274)
|+...+.+.|.+.+......+.+..+.+.++|+..|..++..++ .+|.+++++++..
T Consensus 155 pg~v~~~~~g~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~na~~N~l~al~~~~~ 224 (335)
T 3ghy_A 155 PGHIRHGNGRRLILGEPAGGASPRLASIAALFGRAGLQAECSEAIQRDIWFKLWGNMTMNPVSVLTGATC 224 (335)
T ss_dssp TTEEEECSCCEEEEECTTCSCCHHHHHHHHHHHHTTCEEEECSCHHHHHHHHHHTTTTHHHHHHHHCCCH
T ss_pred CcEEEECCCCeEEEecCCCCcCHHHHHHHHHHHhCCCCcEeCchHHHHHHHHHHHHhhhhHHHHHhCCCh
Confidence 33322333343333322223456778899999998876555443 2456666666533
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.5e-19 Score=143.98 Aligned_cols=145 Identities=11% Similarity=0.146 Sum_probs=114.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHHHH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAM 89 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~~ 89 (274)
.|||+|||+|+||++|+.+|.++|+ +|++| +|. .+ +.+|| |+|||++.+.+++.
T Consensus 6 ~mkI~IIG~G~~G~sLA~~L~~~G~----~V~~~-~~~------------------~~-~~~aD--ilavP~~ai~~vl~ 59 (232)
T 3dfu_A 6 RLRVGIFDDGSSTVNMAEKLDSVGH----YVTVL-HAP------------------ED-IRDFE--LVVIDAHGVEGYVE 59 (232)
T ss_dssp CCEEEEECCSCCCSCHHHHHHHTTC----EEEEC-SSG------------------GG-GGGCS--EEEECSSCHHHHHH
T ss_pred CcEEEEEeeCHHHHHHHHHHHHCCC----EEEEe-cCH------------------HH-hccCC--EEEEcHHHHHHHHH
Confidence 4799999999999999999999999 99999 872 12 56789 99999999999999
Q ss_pred HhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCCe-EEc
Q 024016 90 QIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI-WRA 167 (274)
Q Consensus 90 ~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~-~~~ 167 (274)
++.+.++++++|+++++.++.+.++...+ +..++..||.. .....+... +++..+.++++++.+|.. +++
T Consensus 60 ~l~~~l~~g~ivvd~sgs~~~~vl~~~~~~g~~fvg~HPm~-----g~~~~i~a~---d~~a~~~l~~L~~~lG~~vv~~ 131 (232)
T 3dfu_A 60 KLSAFARRGQMFLHTSLTHGITVMDPLETSGGIVMSAHPIG-----QDRWVASAL---DELGETIVGLLVGELGGSIVEI 131 (232)
T ss_dssp HHHTTCCTTCEEEECCSSCCGGGGHHHHHTTCEEEEEEEEE-----TTEEEEEES---SHHHHHHHHHHHHHTTCEECCC
T ss_pred HHHHhcCCCCEEEEECCcCHHHHHHHHHhCCCcEEEeeeCC-----CCceeeeCC---CHHHHHHHHHHHHHhCCEEEEe
Confidence 99998999999999887777666655433 45677777753 123444443 678899999999999965 889
Q ss_pred CccchhhHHHhhcchHHHHHH
Q 024016 168 DEKLFDAITGLSGSGPAYIFL 188 (274)
Q Consensus 168 ~e~~~~~~~a~~~~~~~~~~~ 188 (274)
++++++.+.+...+.|+++..
T Consensus 132 ~~~~hd~~~AAvsh~nhLv~L 152 (232)
T 3dfu_A 132 ADDKRAQLAAALTYAGFLSTL 152 (232)
T ss_dssp CGGGHHHHHHHHHHHHHHHHH
T ss_pred CHHHHhHHHHHHHHHHHHHHH
Confidence 999998887766665655443
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-17 Score=158.08 Aligned_cols=188 Identities=14% Similarity=0.038 Sum_probs=138.1
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH-----------HHcC-------------ceecc
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF-----------ESIG-------------VKVLS 63 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l-----------~~~g-------------~~~~~ 63 (274)
+..+||+|||+|.||++||..|.++|| +|++| |+++++++.. .+.| ++.++
T Consensus 312 ~~i~kV~VIGaG~MG~~iA~~la~aG~----~V~l~-D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~ 386 (715)
T 1wdk_A 312 KDVKQAAVLGAGIMGGGIAYQSASKGT----PILMK-DINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTL 386 (715)
T ss_dssp CCCSSEEEECCHHHHHHHHHHHHHTTC----CEEEE-CSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEES
T ss_pred ccCCEEEEECCChhhHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEEC
Confidence 345789999999999999999999999 99999 9999887653 2233 34556
Q ss_pred CchhhccCCCEEEEeeCccc--HHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEE
Q 024016 64 DNNAVVEYSDVVVFSVKPQV--VKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVM 140 (274)
Q Consensus 64 ~~~~~~~~aDiIil~v~~~~--~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i 140 (274)
++ +.+++||+||+|||.+. .++++.++.+.++++++++|.++++++..+.+.+. ..+++..|+..|..... ...+
T Consensus 387 d~-~~~~~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~~~~~~~~~ig~hf~~P~~~~~-lvev 464 (715)
T 1wdk_A 387 SY-GDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMP-LVEV 464 (715)
T ss_dssp SS-TTGGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCC-EEEE
T ss_pred CH-HHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHHHHHHHhcCccceEEEEccCCcccCc-eEEE
Confidence 66 67889999999998654 56788888888999999999889999988887765 24688888877765443 3345
Q ss_pred ecCCCCCHHHHHHHHHHhhhcCCe-EEcCccchhhHHHhhcchHHHH-HHHHHHHHHHHHHcCCCHHHHHHHH
Q 024016 141 SLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYI-FLAIEALADGGVAAGLPRELALGLA 211 (274)
Q Consensus 141 ~~~~~~~~~~~~~v~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~-~~~~~~l~e~~~~~Gl~~~~~~~~~ 211 (274)
+.++..+++.++.+.++++.+|+. +++++. ..- . .+.++ ..+.+++ . ..+.|+++++..+++
T Consensus 465 v~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~Gf----i--~Nril~~~~~Ea~-~-l~~~G~~~~~id~~~ 528 (715)
T 1wdk_A 465 IRGEKSSDLAVATTVAYAKKMGKNPIVVNDC-PGF----L--VNRVLFPYFGGFA-K-LVSAGVDFVRIDKVM 528 (715)
T ss_dssp EECSSCCHHHHHHHHHHHHHTTCEEEEEESC-TTT----T--HHHHHHHHHHHHH-H-HHHTTCCHHHHHHHH
T ss_pred EECCCCCHHHHHHHHHHHHHhCCEeEEEcCC-CCh----h--hhHHHHHHHHHHH-H-HHHCCCCHHHHHHHH
Confidence 567777899999999999999975 666542 110 0 12222 2223332 1 234589998877776
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-17 Score=143.17 Aligned_cols=238 Identities=15% Similarity=0.204 Sum_probs=152.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce-------------eccCchhhccCCCEEE
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK-------------VLSDNNAVVEYSDVVV 76 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~-------------~~~~~~~~~~~aDiIi 76 (274)
++||+|||+|+||++++..|.++|+ +|++| +++++.+.+.+.|.. ..++. +.+.++|+||
T Consensus 19 ~~kI~IiGaGa~G~~~a~~L~~~G~----~V~l~--~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vi 91 (318)
T 3hwr_A 19 GMKVAIMGAGAVGCYYGGMLARAGH----EVILI--ARPQHVQAIEATGLRLETQSFDEQVKVSASSDP-SAVQGADLVL 91 (318)
T ss_dssp -CEEEEESCSHHHHHHHHHHHHTTC----EEEEE--CCHHHHHHHHHHCEEEECSSCEEEECCEEESCG-GGGTTCSEEE
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCC----eEEEE--EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCH-HHcCCCCEEE
Confidence 4799999999999999999999999 99999 567788888775543 23344 3468899999
Q ss_pred EeeCcccHHHHHHHhccccCCCCEEEEecCCCCH-HHHHHhhCCCceEE---------EcCCcHHhhcCCceEEecCCCC
Q 024016 77 FSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL-KDLQEWTGHSRFIR---------VMPNTPSAVGEAATVMSLGGTA 146 (274)
Q Consensus 77 l~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~-~~l~~~~~~~~~~~---------~~p~~~~~~~~g~~~i~~~~~~ 146 (274)
+|||+++++++++++.+.++++++||++++|+.. +.+.+.++ .+++. ..|+...+.+.|.+.+ +.
T Consensus 92 lavk~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~l~~~~~-~~vl~g~~~~~a~~~gP~~~~~~~~g~~~i--g~-- 166 (318)
T 3hwr_A 92 FCVKSTDTQSAALAMKPALAKSALVLSLQNGVENADTLRSLLE-QEVAAAVVYVATEMAGPGHVRHHGRGELVI--EP-- 166 (318)
T ss_dssp ECCCGGGHHHHHHHHTTTSCTTCEEEEECSSSSHHHHHHHHCC-SEEEEEEEEEEEEEEETTEEEEEEEEEEEE--CC--
T ss_pred EEcccccHHHHHHHHHHhcCCCCEEEEeCCCCCcHHHHHHHcC-CcEEEEEEEEeEEEcCCeEEEEcCCceEEE--cC--
Confidence 9999999999999999999999999999999997 67777775 33332 2355554555554433 32
Q ss_pred CHHHHHHHHHHhhhcCCeEEcCcc-------------chhhHHHhhcchHHHH------HHHHH-HHHH---HHHHcCCC
Q 024016 147 TEEDGELIGKLFGSVGKIWRADEK-------------LFDAITGLSGSGPAYI------FLAIE-ALAD---GGVAAGLP 203 (274)
Q Consensus 147 ~~~~~~~v~~ll~~~g~~~~~~e~-------------~~~~~~a~~~~~~~~~------~~~~~-~l~e---~~~~~Gl~ 203 (274)
.+..+.+.++|+..|..++.+++ .++.++++.++...-+ ..++. .+.| .+.+.|++
T Consensus 167 -~~~~~~l~~~l~~~~~~~~~~~Di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~va~a~G~~ 245 (318)
T 3hwr_A 167 -TSHGANLAAIFAAAGVPVETSDNVRGALWAKLILNCAYNALSAITQLPYGRLVRGEGVEAVMRDVMEECFAVARAEGVK 245 (318)
T ss_dssp -CTTTHHHHHHHHHTTCCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSTTHHHHHHHHHHHHHHHHHHTTCC
T ss_pred -CHHHHHHHHHHHhCCCCcEechHHHHHHHHHHHHHhhhhHHHHHHCCCHHHHhcChhHHHHHHHHHHHHHHHHHHcCCC
Confidence 34557788999988866555554 2455667666544321 11222 2222 34577876
Q ss_pred HHH-HHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCC-----chHHHHHHHHHhCCHHHHHHHHHHHHH
Q 024016 204 REL-ALGLASQTVLGAASMVTKSGKHPGQLKDDVASPG-----GTTIAGIHELEKSGFRGILMNAVVAAA 267 (274)
Q Consensus 204 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~t~~~l~~l~~~~~~~~~~~a~~~~~ 267 (274)
.+. ..+.+...+..+ ....+.++.|.. ..+ ..+-.-++.-++.|+.....+.+.+.+
T Consensus 246 l~~~~~~~~~~~~~~~------~~~~sSM~qD~~-~gr~tEid~i~G~vv~~a~~~gv~tP~~~~l~~ll 308 (318)
T 3hwr_A 246 LPDDVALAIRRIAETM------PRQSSSTAQDLA-RGKRSEIDHLNGLIVRRGDALGIPVPANRVLHALV 308 (318)
T ss_dssp CCTTHHHHHHHHHHHS------TTCCCHHHHHHH-TTCCCSGGGTHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhc------CCCCcHHHHHHH-cCChhHHHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 432 222222221111 123455655543 222 223344566677777766666555444
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-17 Score=142.84 Aligned_cols=164 Identities=15% Similarity=0.202 Sum_probs=118.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce---------------eccCchhhccCCCEE
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK---------------VLSDNNAVVEYSDVV 75 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~---------------~~~~~~~~~~~aDiI 75 (274)
|||+|||+|.||+.++..|.++|+ +|++| +|++ .+.+.+.|+. +++++.++.+++|+|
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~----~V~~~-~r~~--~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlV 75 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGH----CVSVV-SRSD--YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCT 75 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTC----EEEEE-CSTT--HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC----eEEEE-eCCh--HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEE
Confidence 799999999999999999999999 99999 9986 2666655532 234555555589999
Q ss_pred EEeeCcccHHHHHHHhccccCCCCEEEEecCCCC-HHHHHHhhCCCceEEEcCCc------HHhh---cCCceEEecCCC
Q 024016 76 VFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVK-LKDLQEWTGHSRFIRVMPNT------PSAV---GEAATVMSLGGT 145 (274)
Q Consensus 76 il~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~-~~~l~~~~~~~~~~~~~p~~------~~~~---~~g~~~i~~~~~ 145 (274)
|+|||+++++++++++.+.++++++||++.+|+. .+.+++.++..+++...... |..+ +.|.+.+..-+.
T Consensus 76 ilavK~~~~~~~l~~l~~~l~~~t~Iv~~~nGi~~~~~l~~~~~~~~vl~g~~~~~a~~~~pg~v~~~~~~~~~ig~~~~ 155 (320)
T 3i83_A 76 LLCIKVVEGADRVGLLRDAVAPDTGIVLISNGIDIEPEVAAAFPDNEVISGLAFIGVTRTAPGEIWHQAYGRLMLGNYPG 155 (320)
T ss_dssp EECCCCCTTCCHHHHHTTSCCTTCEEEEECSSSSCSHHHHHHSTTSCEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSS
T ss_pred EEecCCCChHHHHHHHHhhcCCCCEEEEeCCCCChHHHHHHHCCCCcEEEEEEEeceEEcCCCEEEECCCCEEEEecCCC
Confidence 9999999999999999999999999999999997 47888888755555443211 2222 222223322222
Q ss_pred CCHHHHHHHHHHhhhcCCeEEcCccc-------------hhhHHHhhcc
Q 024016 146 ATEEDGELIGKLFGSVGKIWRADEKL-------------FDAITGLSGS 181 (274)
Q Consensus 146 ~~~~~~~~v~~ll~~~g~~~~~~e~~-------------~~~~~a~~~~ 181 (274)
.+.+..+.+.++|+..|..++..++. ++.++++.++
T Consensus 156 ~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~N~ltal~~~ 204 (320)
T 3i83_A 156 GVSERVKTLAAAFEEAGIDGIATENITTARWQKCVWNAAFNPLSVLSGG 204 (320)
T ss_dssp CCCHHHHHHHHHHHHTTSCEEECSCHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CccHHHHHHHHHHHhCCCCceECHHHHHHHHHHHHHHHhhhHHHHHHCC
Confidence 34567888999999988665555441 3456777664
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-16 Score=145.23 Aligned_cols=189 Identities=18% Similarity=0.169 Sum_probs=135.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----------cC-----------ceeccCc
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------IG-----------VKVLSDN 65 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-----------~g-----------~~~~~~~ 65 (274)
+..+||+|||+|.||..||..|.++|+ +|++| |+++++++.+.+ .| ..++++.
T Consensus 35 ~~~~kV~VIGaG~MG~~iA~~la~~G~----~V~l~-D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~ 109 (463)
T 1zcj_A 35 QPVSSVGVLGLGTMGRGIAISFARVGI----SVVAV-ESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST 109 (463)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHTTTC----EEEEE-CSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCC----eEEEE-ECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH
Confidence 456799999999999999999999999 99999 999987765432 11 2344455
Q ss_pred hhhccCCCEEEEeeCccc--HHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEec
Q 024016 66 NAVVEYSDVVVFSVKPQV--VKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSL 142 (274)
Q Consensus 66 ~~~~~~aDiIil~v~~~~--~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~ 142 (274)
+.+++||+||+|||.+. ..+++.++.+.++++++|++.++++++..+++.+. ..+++..|+..|..... ...++.
T Consensus 110 -~~~~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~~~~~la~~~~~~~~~ig~hf~~P~~~~~-lvevv~ 187 (463)
T 1zcj_A 110 -KELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMR-LLEVIP 187 (463)
T ss_dssp -GGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCC-EEEEEE
T ss_pred -HHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCcCHHHHHHHhcCCcceEEeecCCCcccce-eEEEeC
Confidence 56889999999998653 46788888888899999998888888888877665 34677777766654332 344666
Q ss_pred CCCCCHHHHHHHHHHhhhcCCe-EEcCccchhhHHHhhcchHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHH
Q 024016 143 GGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIF-LAIEALADGGVAAGLPRELALGLAS 212 (274)
Q Consensus 143 ~~~~~~~~~~~v~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~-~~~~~l~e~~~~~Gl~~~~~~~~~~ 212 (274)
++..+++.++.++++++.+|+. +++++.. .. ..+.++. .+.+++ . ..+.|+++++..+++.
T Consensus 188 g~~t~~e~~~~~~~l~~~lGk~~v~v~~~~-gf------i~Nrll~~~~~ea~-~-l~~~G~~~~~id~~~~ 250 (463)
T 1zcj_A 188 SRYSSPTTIATVMSLSKKIGKIGVVVGNCY-GF------VGNRMLAPYYNQGF-F-LLEEGSKPEDVDGVLE 250 (463)
T ss_dssp CSSCCHHHHHHHHHHHHHTTCEEEEBCCST-TT------THHHHHHHHHHHHH-H-HHHTTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCEEEEECCCc-cH------HHHHHHHHHHHHHH-H-HHHcCCCHHHHHHHHH
Confidence 7778999999999999999975 6766421 10 0111111 122222 1 2345888887777664
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=6.7e-18 Score=138.18 Aligned_cols=151 Identities=18% Similarity=0.235 Sum_probs=113.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~ 88 (274)
++|||+|||+|+||.+++.+|.+.|+ +|++| +|++++.+.+.+.|+... +..++++++|+||+|+|++.+++++
T Consensus 27 ~~~~I~iiG~G~~G~~la~~l~~~g~----~V~~~-~r~~~~~~~~~~~g~~~~-~~~~~~~~~DvVi~av~~~~~~~v~ 100 (215)
T 2vns_A 27 EAPKVGILGSGDFARSLATRLVGSGF----KVVVG-SRNPKRTARLFPSAAQVT-FQEEAVSSPEVIFVAVFREHYSSLC 100 (215)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTC----CEEEE-ESSHHHHHHHSBTTSEEE-EHHHHTTSCSEEEECSCGGGSGGGG
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHcCCcee-cHHHHHhCCCEEEECCChHHHHHHH
Confidence 45799999999999999999999998 99999 999998888877777765 6677888999999999998877777
Q ss_pred HHhccccCCCCEEEEecCCCCHHHHH----------HhhCCCceEEEcCCcHHh-----hcCCce-EEecCCCCCHHHHH
Q 024016 89 MQIRPLLSRKKLLVSVAAGVKLKDLQ----------EWTGHSRFIRVMPNTPSA-----VGEAAT-VMSLGGTATEEDGE 152 (274)
Q Consensus 89 ~~i~~~l~~~~~vis~~~g~~~~~l~----------~~~~~~~~~~~~p~~~~~-----~~~g~~-~i~~~~~~~~~~~~ 152 (274)
. +.+.+ +++++|+++++.+.+.++ +.+++.++++.+...... ...+.+ .+..+ .+++..+
T Consensus 101 ~-l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~~~~vv~~~n~~~~~~~~~~~~~g~~~~~~~g--~~~~~~~ 176 (215)
T 2vns_A 101 S-LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLFPTCTVVKAFNVISAWTLQAGPRDGNRQVPICG--DQPEAKR 176 (215)
T ss_dssp G-GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCTTSEEEEECTTBCHHHHHTCSCSSCCEEEEEE--SCHHHHH
T ss_pred H-HHHhc-CCCEEEEeCCCcccccccccccHHHHHHHHCCCCeEEeccccccHhHhcccccCCceeEEEec--CCHHHHH
Confidence 5 65555 789999999998765443 556655777765221111 111222 23333 2688999
Q ss_pred HHHHHhhhcCCe-EEcCc
Q 024016 153 LIGKLFGSVGKI-WRADE 169 (274)
Q Consensus 153 ~v~~ll~~~g~~-~~~~e 169 (274)
.++++|+.+|.. +++++
T Consensus 177 ~v~~ll~~~G~~~~~~g~ 194 (215)
T 2vns_A 177 AVSEMALAMGFMPVDMGS 194 (215)
T ss_dssp HHHHHHHHTTCEEEECCS
T ss_pred HHHHHHHHcCCceEeecc
Confidence 999999999975 77765
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-16 Score=151.95 Aligned_cols=187 Identities=15% Similarity=0.061 Sum_probs=134.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----------cC-------------ceeccC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------IG-------------VKVLSD 64 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-----------~g-------------~~~~~~ 64 (274)
.++||+|||+|.||+.||..|.++|| +|++| |+++++++...+ .| ++..++
T Consensus 311 ~~~kV~VIGaG~MG~~iA~~la~aG~----~V~l~-D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d 385 (725)
T 2wtb_A 311 KIKKVAIIGGGLMGSGIATALILSNY----PVILK-EVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLD 385 (725)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHTTTC----CEEEE-CSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESS
T ss_pred cCcEEEEEcCCHhhHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCC
Confidence 45789999999999999999999999 99999 999988765421 22 344556
Q ss_pred chhhccCCCEEEEeeCccc--HHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEe
Q 024016 65 NNAVVEYSDVVVFSVKPQV--VKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMS 141 (274)
Q Consensus 65 ~~~~~~~aDiIil~v~~~~--~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~ 141 (274)
. +.+++||+||+|||.+. .++++.++.+.+++++++++.++++++..+.+.+. ..+++..|+..|..... ...++
T Consensus 386 ~-~~~~~aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~~~~~p~~~iG~hf~~P~~~~~-lvevv 463 (725)
T 2wtb_A 386 Y-ESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMP-LLEIV 463 (725)
T ss_dssp S-GGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTTTCSCTTTEEEEEECSSTTTCC-EEEEE
T ss_pred H-HHHCCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHHhcCCCCEEEecCCCCcccCc-eEEEE
Confidence 5 57889999999998664 56788888888899999888889999988877664 24677777655654322 34456
Q ss_pred cCCCCCHHHHHHHHHHhhhcCCe-EEcCccchhhHHHhhcchHHHH-HHHHHHHHHHHHHcCCCHHHHHHHH
Q 024016 142 LGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYI-FLAIEALADGGVAAGLPRELALGLA 211 (274)
Q Consensus 142 ~~~~~~~~~~~~v~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~-~~~~~~l~e~~~~~Gl~~~~~~~~~ 211 (274)
.++..+++.++.+.++++.+|+. +++++. ... . .+.++ ..+.+++ . ..+.|+++++..+++
T Consensus 464 ~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~Gf----i--~Nril~~~~~Ea~-~-l~~~G~~~e~id~~~ 526 (725)
T 2wtb_A 464 RTNHTSAQVIVDLLDVGKKIKKTPVVVGNC-TGF----A--VNRMFFPYTQAAM-F-LVECGADPYLIDRAI 526 (725)
T ss_dssp ECSSCCHHHHHHHHHHHHHTTCEEEEEESS-TTT----T--HHHHHHHHHHHHH-H-HHHTTCCHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHhCCEEEEECCC-ccH----H--HHHHHHHHHHHHH-H-HHHCCCCHHHHHHHH
Confidence 67777999999999999999975 666542 111 0 12221 2223332 1 234599998887777
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-16 Score=141.90 Aligned_cols=195 Identities=11% Similarity=0.139 Sum_probs=129.4
Q ss_pred CCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc------------------CceeccCc
Q 024016 4 FPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI------------------GVKVLSDN 65 (274)
Q Consensus 4 ~~~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~------------------g~~~~~~~ 65 (274)
+++.+++|||+|||+|.||.++|..|.+ |+ +|++| ||++++++.+.+. +++.++++
T Consensus 30 ~~r~~~~mkIaVIGlG~mG~~lA~~La~-G~----~V~~~-D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~ 103 (432)
T 3pid_A 30 MGRGSEFMKITISGTGYVGLSNGVLIAQ-NH----EVVAL-DIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDK 103 (432)
T ss_dssp -----CCCEEEEECCSHHHHHHHHHHHT-TS----EEEEE-CSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCH
T ss_pred cccccCCCEEEEECcCHHHHHHHHHHHc-CC----eEEEE-ecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCH
Confidence 4566677899999999999999999987 99 99999 9999998877651 45667777
Q ss_pred hhhccCCCEEEEeeCcc-----------cHHHHHHHhccccCCCCEEEEecCCCCH---HHHHHhhCCCceEEEcCCc--
Q 024016 66 NAVVEYSDVVVFSVKPQ-----------VVKDVAMQIRPLLSRKKLLVSVAAGVKL---KDLQEWTGHSRFIRVMPNT-- 129 (274)
Q Consensus 66 ~~~~~~aDiIil~v~~~-----------~~~~v~~~i~~~l~~~~~vis~~~g~~~---~~l~~~~~~~~~~~~~p~~-- 129 (274)
.+++++||+||+|||.. .++++++++.+ ++++++||.. +++++ +.+.+.+... .+.+.|..
T Consensus 104 ~ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~-STv~pgtt~~l~~~l~~~-~v~~sPe~~~ 180 (432)
T 3pid_A 104 HDAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIK-STIPVGFTRDIKERLGID-NVIFSPEFLR 180 (432)
T ss_dssp HHHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEEC-SCCCTTHHHHHHHHHTCC-CEEECCCCCC
T ss_pred HHHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEe-CCCChHHHHHHHHHHhhc-cEeecCccCC
Confidence 88899999999999864 47888888988 8999998864 45554 4555555532 23334431
Q ss_pred HHhhcCC----ceEEecCCCCCHHHHHHHHHHhhh--cCC--eEEcCccchhhHHHhhcchHHHHHHHHHHHHHH---HH
Q 024016 130 PSAVGEA----ATVMSLGGTATEEDGELIGKLFGS--VGK--IWRADEKLFDAITGLSGSGPAYIFLAIEALADG---GV 198 (274)
Q Consensus 130 ~~~~~~g----~~~i~~~~~~~~~~~~~v~~ll~~--~g~--~~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~~ 198 (274)
|.....+ ..++..+ +++..+.+.++|.. ++. .++.+...-..++.+. .+.|.+..+..+.|. +.
T Consensus 181 ~G~A~~~~l~p~rIvvG~---~~~~~~~~~~ll~~~~~~~~~~v~~~~~~~AE~~Kl~--~N~~~a~~Ia~~nEl~~lae 255 (432)
T 3pid_A 181 EGRALYDNLHPSRIVIGE---RSARAERFADLLKEGAIKQDIPTLFTDSTEAEAIKLF--ANTYLALRVAYFNELDSYAE 255 (432)
T ss_dssp TTSHHHHHHSCSCEEESS---CSHHHHHHHHHHHHHCSSSSCCEEECCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhcccCCceEEecC---CHHHHHHHHHHHHhhhccCCCeEEecCccHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 1111111 1344433 46778889999986 542 3444433233334333 355555544444444 56
Q ss_pred HcCCCHHHHHHHHH
Q 024016 199 AAGLPRELALGLAS 212 (274)
Q Consensus 199 ~~Gl~~~~~~~~~~ 212 (274)
+.|+|.++..+.+.
T Consensus 256 ~~GiD~~~v~~~~~ 269 (432)
T 3pid_A 256 SQGLNSKQIIEGVC 269 (432)
T ss_dssp HTTCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHc
Confidence 89999998877664
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.3e-17 Score=146.55 Aligned_cols=189 Identities=16% Similarity=0.139 Sum_probs=130.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-------------------c-CceeccCchhhcc
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------------------I-GVKVLSDNNAVVE 70 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-------------------~-g~~~~~~~~~~~~ 70 (274)
|||+|||+|.||.++|..|.++|+ +|++| ||++++++.+.+ . ++..++++.++++
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~----~V~~~-D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~ 77 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGA----NVRCI-DTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVP 77 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGG
T ss_pred CEEEEECcCHHHHHHHHHHHhcCC----EEEEE-ECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHh
Confidence 799999999999999999999999 99999 999999888765 1 2456677788899
Q ss_pred CCCEEEEeeCcc----------cHHHHHHHhccccCCCCEEEEecCCCCH---HHHHHhhC----C----Cc-eEEEcCC
Q 024016 71 YSDVVVFSVKPQ----------VVKDVAMQIRPLLSRKKLLVSVAAGVKL---KDLQEWTG----H----SR-FIRVMPN 128 (274)
Q Consensus 71 ~aDiIil~v~~~----------~~~~v~~~i~~~l~~~~~vis~~~g~~~---~~l~~~~~----~----~~-~~~~~p~ 128 (274)
+||+||+|||.. .++++++++.++++++++||+.+ ++++ +.+.+.+. . .. .+...|.
T Consensus 78 ~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~S-Tv~pgt~~~l~~~l~~~~~~~~~~~d~~v~~~Pe 156 (450)
T 3gg2_A 78 EADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKS-TVPVGSYRLIRKAIQEELDKREVLIDFDIASNPE 156 (450)
T ss_dssp GCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS-CCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECCC
T ss_pred cCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEee-eCCCcchHHHHHHHHHhccccCcCcceeEEechh
Confidence 999999999865 79999999999999999888765 4543 23333221 1 11 1223343
Q ss_pred cHHhhcCCc---------eEEecCCCCCHHHHHHHHHHhhhcCC---eEEcCccchhhHHHhhcchHHHHHHHHHHHHHH
Q 024016 129 TPSAVGEAA---------TVMSLGGTATEEDGELIGKLFGSVGK---IWRADEKLFDAITGLSGSGPAYIFLAIEALADG 196 (274)
Q Consensus 129 ~~~~~~~g~---------~~i~~~~~~~~~~~~~v~~ll~~~g~---~~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~ 196 (274)
. ...|. .++..+. +++..+.++++++.+++ .++.++..-..++.+. .+.+.+..+..+.|.
T Consensus 157 ~---a~eG~~~~~~~~p~~ivvG~~--~~~~~~~~~~l~~~~~~~~~~~~~~d~~~aE~~Kl~--~N~~~a~~ia~~nE~ 229 (450)
T 3gg2_A 157 F---LKEGNAIDDFMKPDRVVVGVD--SDRARELITSLYKPMLLNNFRVLFMDIASAEMTKYA--ANAMLATRISFMNDV 229 (450)
T ss_dssp C---CCTTSHHHHHHSCSCEEEEES--SHHHHHHHHHHHTTTCCSCCCEEEECHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred h---hcccchhhhccCCCEEEEEcC--CHHHHHHHHHHHHHHhcCCCeEEecCHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 2 22222 2343332 57889999999999885 3544432222333333 245555545555554
Q ss_pred ---HHHcCCCHHHHHHHHH
Q 024016 197 ---GVAAGLPRELALGLAS 212 (274)
Q Consensus 197 ---~~~~Gl~~~~~~~~~~ 212 (274)
+.+.|+|.++..+++.
T Consensus 230 ~~l~~~~Gid~~~v~~~~~ 248 (450)
T 3gg2_A 230 ANLCERVGADVSMVRLGIG 248 (450)
T ss_dssp HHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHc
Confidence 5689999998877765
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.9e-17 Score=133.06 Aligned_cols=135 Identities=15% Similarity=0.244 Sum_probs=104.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~ 88 (274)
..+||+|||+|+||++++..|.++|+ +|++| +|+++ .++++|+||+|+|++.+++++
T Consensus 18 ~~~~I~iiG~G~mG~~la~~l~~~g~----~V~~~-~~~~~------------------~~~~aD~vi~av~~~~~~~v~ 74 (209)
T 2raf_A 18 QGMEITIFGKGNMGQAIGHNFEIAGH----EVTYY-GSKDQ------------------ATTLGEIVIMAVPYPALAALA 74 (209)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CTTCC------------------CSSCCSEEEECSCHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-cCCHH------------------HhccCCEEEEcCCcHHHHHHH
Confidence 45799999999999999999999999 99999 99865 457899999999999999999
Q ss_pred HHhccccCCCCEEEEecCCCC---------------HHHHHHhhCCCceEEE-----cCCcHHhhcCC--ceE-EecCCC
Q 024016 89 MQIRPLLSRKKLLVSVAAGVK---------------LKDLQEWTGHSRFIRV-----MPNTPSAVGEA--ATV-MSLGGT 145 (274)
Q Consensus 89 ~~i~~~l~~~~~vis~~~g~~---------------~~~l~~~~~~~~~~~~-----~p~~~~~~~~g--~~~-i~~~~~ 145 (274)
.++.+.++ ++++|++++|++ .+.+++.+++.++++. .|+.+.....+ .+. ++.+
T Consensus 75 ~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~~~~vv~~~~~~~~p~~~~~~~~g~~~~~~~~~g-- 151 (209)
T 2raf_A 75 KQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLPDSQVLKAFNTTFAATLQSGQVNGKEPTTVLVAG-- 151 (209)
T ss_dssp HHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCTTSEEEECSTTSCHHHHHHSEETTTEECEEEEEE--
T ss_pred HHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCCCCcEEEeeecccHhhccccccCCCCCceeEEcC--
Confidence 99988887 899999988776 4677777776677773 34333332233 223 3333
Q ss_pred CCHHHHHHHHHHhhhcCC-eEEcCc
Q 024016 146 ATEEDGELIGKLFGSVGK-IWRADE 169 (274)
Q Consensus 146 ~~~~~~~~v~~ll~~~g~-~~~~~e 169 (274)
.+++..+.++++|+.+|. .+++++
T Consensus 152 ~~~~~~~~v~~ll~~~G~~~~~~~~ 176 (209)
T 2raf_A 152 NDDSAKQRFTRALADSPLEVKDAGK 176 (209)
T ss_dssp SCHHHHHHHHHHTTTSSCEEEEEES
T ss_pred CCHHHHHHHHHHHHHcCCceEeCCC
Confidence 257889999999999995 466654
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.3e-17 Score=144.36 Aligned_cols=190 Identities=13% Similarity=0.139 Sum_probs=130.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc--------------------CceeccCchhhc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--------------------GVKVLSDNNAVV 69 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~--------------------g~~~~~~~~~~~ 69 (274)
..+|+|||+|.||.+||..|.++|| +|++| ||++++++.+.+. +++.++++.+++
T Consensus 8 ~~~~~vIGlG~vG~~~A~~La~~G~----~V~~~-D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~ 82 (446)
T 4a7p_A 8 SVRIAMIGTGYVGLVSGACFSDFGH----EVVCV-DKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGV 82 (446)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHH
T ss_pred ceEEEEEcCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHH
Confidence 4689999999999999999999999 99999 9999999887651 245667888889
Q ss_pred cCCCEEEEeeCcc-----------cHHHHHHHhccccCCCCEEEEecCCCCHH---HHHHhh----CCC-ceEEEcCCcH
Q 024016 70 EYSDVVVFSVKPQ-----------VVKDVAMQIRPLLSRKKLLVSVAAGVKLK---DLQEWT----GHS-RFIRVMPNTP 130 (274)
Q Consensus 70 ~~aDiIil~v~~~-----------~~~~v~~~i~~~l~~~~~vis~~~g~~~~---~l~~~~----~~~-~~~~~~p~~~ 130 (274)
++||+||+|||.. .++++++++.++++++++||+.+ ++++. .+.+.+ ++. -.+...|..
T Consensus 83 ~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~S-Tv~pgtt~~l~~~l~e~~~~~d~~v~~~Pe~- 160 (446)
T 4a7p_A 83 KDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKS-TVPVGTGDEVERIIAEVAPNSGAKVVSNPEF- 160 (446)
T ss_dssp TTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECS-CCCTTHHHHHHHHHHHHSTTSCCEEEECCCC-
T ss_pred hcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeC-CCCchHHHHHHHHHHHhCCCCCceEEeCccc-
Confidence 9999999998632 48999999999999999999764 56543 333322 111 122233432
Q ss_pred HhhcCCc---------eEEecCCCCCHHHHHHHHHHhhhcCC----eEEcCccchhhHHHhhcchHHHHHHHHHHHHHH-
Q 024016 131 SAVGEAA---------TVMSLGGTATEEDGELIGKLFGSVGK----IWRADEKLFDAITGLSGSGPAYIFLAIEALADG- 196 (274)
Q Consensus 131 ~~~~~g~---------~~i~~~~~~~~~~~~~v~~ll~~~g~----~~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~- 196 (274)
..+|. .++..+ .+++..+.++++++.+++ .++.++-.-..++.+. .+.|.+..+..+.|.
T Consensus 161 --a~eG~a~~d~~~p~~ivvG~--~~~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~Kl~--~N~~~a~~ia~~nE~~ 234 (446)
T 4a7p_A 161 --LREGAAIEDFKRPDRVVVGT--EDEFARQVMREIYRPLSLNQSAPVLFTGRRTSELIKYA--ANAFLAVKITFINEIA 234 (446)
T ss_dssp --CCTTSHHHHHHSCSCEEEEC--SCHHHHHHHHHHHCSCC-----CEEEECHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred --ccccchhhhccCCCEEEEeC--CcHHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 22222 234433 257889999999999885 2444432222333332 245555555555554
Q ss_pred --HHHcCCCHHHHHHHHH
Q 024016 197 --GVAAGLPRELALGLAS 212 (274)
Q Consensus 197 --~~~~Gl~~~~~~~~~~ 212 (274)
+.+.|+|.++..+.+.
T Consensus 235 ~l~~~~GiD~~~v~~~~~ 252 (446)
T 4a7p_A 235 DLCEQVGADVQEVSRGIG 252 (446)
T ss_dssp HHHHHTTCCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHh
Confidence 5699999998887765
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.4e-16 Score=134.13 Aligned_cols=164 Identities=16% Similarity=0.178 Sum_probs=113.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccC----------chhhccCCCEEEEee
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSD----------NNAVVEYSDVVVFSV 79 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~----------~~~~~~~aDiIil~v 79 (274)
+|||+|||+|+||+.++..|. +|+ +|++| +|++++.+.+.+.|+.+..+ ..+....+|+||+||
T Consensus 2 ~mkI~IiGaGa~G~~~a~~L~-~g~----~V~~~-~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilav 75 (307)
T 3ego_A 2 SLKIGIIGGGSVGLLCAYYLS-LYH----DVTVV-TRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTV 75 (307)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-TTS----EEEEE-CSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECC
T ss_pred CCEEEEECCCHHHHHHHHHHh-cCC----ceEEE-ECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEe
Confidence 379999999999999999999 998 99999 99998888888777654321 124567899999999
Q ss_pred CcccHHHHHHHhccccCCCCEEEEecCCCCHH-HHHHhhCCCceEEEcCCc------H---HhhcCCceEEecCCCCCHH
Q 024016 80 KPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLK-DLQEWTGHSRFIRVMPNT------P---SAVGEAATVMSLGGTATEE 149 (274)
Q Consensus 80 ~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~~-~l~~~~~~~~~~~~~p~~------~---~~~~~g~~~i~~~~~~~~~ 149 (274)
|+++++++++.+.+. .+++ ||++.+|+..+ .++++++..+++..+... | .+.+.|.+.+..-++ ..+
T Consensus 76 K~~~~~~~l~~l~~~-~~~~-ivs~~nGi~~~e~l~~~~~~~~vl~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~-~~~ 152 (307)
T 3ego_A 76 KQHQLQSVFSSLERI-GKTN-ILFLQNGMGHIHDLKDWHVGHSIYVGIVEHGAVRKSDTAVDHTGLGAIKWSAFDD-AEP 152 (307)
T ss_dssp CGGGHHHHHHHTTSS-CCCE-EEECCSSSHHHHHHHTCCCSCEEEEEEECCEEEECSSSEEEEEECCCEEEEECTT-CCG
T ss_pred CHHHHHHHHHHhhcC-CCCe-EEEecCCccHHHHHHHhCCCCcEEEEEEeeceEECCCCEEEEeeeeeEEEEeCCC-CcH
Confidence 999999999999875 5666 99999999975 777777755555443221 2 222334333332111 133
Q ss_pred HHHHHHHHhhhcCCeEEcCcc-------------chhhHHHhhcch
Q 024016 150 DGELIGKLFGSVGKIWRADEK-------------LFDAITGLSGSG 182 (274)
Q Consensus 150 ~~~~v~~ll~~~g~~~~~~e~-------------~~~~~~a~~~~~ 182 (274)
..+.+.+.|+..|..+..+++ .++.++++.++.
T Consensus 153 ~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~ 198 (307)
T 3ego_A 153 DRLNILFQHNHSDFPIYYETDWYRLLTGKLIVNACINPLTALLQVK 198 (307)
T ss_dssp GGGTTTTSSCCTTSCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhhhCCCCcEechhHHHHHHHHHHHhhhhhHHHHHhcCC
Confidence 344455555555555555543 246677776653
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=99.69 E-value=5.2e-16 Score=141.02 Aligned_cols=193 Identities=15% Similarity=0.165 Sum_probs=125.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhC--CCCCCCcEEEEeCCCHHHHHHHHH-------------------cCceeccCchh
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKS--GVLPPDRICTAVHSNLKRRDAFES-------------------IGVKVLSDNNA 67 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~--g~~~~~~v~v~~~r~~~~~~~l~~-------------------~g~~~~~~~~~ 67 (274)
++|||+|||+|.||.+++..|.++ |+ +|++| ||++++.+.+.+ .++..++++.+
T Consensus 4 ~~mkI~VIG~G~mG~~lA~~La~~g~G~----~V~~~-d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e 78 (467)
T 2q3e_A 4 EIKKICCIGAGYVGGPTCSVIAHMCPEI----RVTVV-DVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDD 78 (467)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHHHCTTS----EEEEE-CSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHH
T ss_pred CccEEEEECCCHHHHHHHHHHHhcCCCC----EEEEE-ECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHH
Confidence 357999999999999999999999 78 99999 999998887532 24566677777
Q ss_pred hccCCCEEEEeeCc-cc--------------HHHHHHHhccccCCCCEEEEecCCCC---HHHHHHhhCC--Cc----eE
Q 024016 68 VVEYSDVVVFSVKP-QV--------------VKDVAMQIRPLLSRKKLLVSVAAGVK---LKDLQEWTGH--SR----FI 123 (274)
Q Consensus 68 ~~~~aDiIil~v~~-~~--------------~~~v~~~i~~~l~~~~~vis~~~g~~---~~~l~~~~~~--~~----~~ 123 (274)
++++||+||+|||. .. +.++++++.+.++++++||+.++ ++ .+.+.+.++. .. .+
T Consensus 79 ~~~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~ST-v~~g~~~~l~~~l~~~~~~~~d~~V 157 (467)
T 2q3e_A 79 AIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKST-VPVRAAESIRRIFDANTKPNLNLQV 157 (467)
T ss_dssp HHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSC-CCTTHHHHHHHHHHHTCCTTCEEEE
T ss_pred HHhcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCc-CCchHHHHHHHHHHHhCCCCCCeEE
Confidence 88899999999973 32 56778888888889988886543 33 2345444431 11 11
Q ss_pred EEcCCcHHhhcCCce---------EEecCCC--CCHHHHHHHHHHhhhc-CC-eEEcCccchhhHHHhhcchHHHHHHHH
Q 024016 124 RVMPNTPSAVGEAAT---------VMSLGGT--ATEEDGELIGKLFGSV-GK-IWRADEKLFDAITGLSGSGPAYIFLAI 190 (274)
Q Consensus 124 ~~~p~~~~~~~~g~~---------~i~~~~~--~~~~~~~~v~~ll~~~-g~-~~~~~e~~~~~~~a~~~~~~~~~~~~~ 190 (274)
...| .....|.. ++..++. .+++..+.++++++.+ |. .++.++........+. .+.+....+
T Consensus 158 ~~~P---e~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~ae~~Kl~--~N~~~a~~i 232 (467)
T 2q3e_A 158 LSNP---EFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLA--ANAFLAQRI 232 (467)
T ss_dssp EECC---CCCCTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECHHHHHHHHHH--HHHHHHHHH
T ss_pred EeCH---HHhhcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCHHHHHHHHHH--HHHHHHHHH
Confidence 2223 22233332 3333321 2577889999999998 64 4555432222233332 233433333
Q ss_pred HHHHH---HHHHcCCCHHHHHHHHH
Q 024016 191 EALAD---GGVAAGLPRELALGLAS 212 (274)
Q Consensus 191 ~~l~e---~~~~~Gl~~~~~~~~~~ 212 (274)
..+.| .+.+.|++.++..+++.
T Consensus 233 a~~nE~~~l~~~~Gid~~~v~~~~~ 257 (467)
T 2q3e_A 233 SSINSISALCEATGADVEEVATAIG 257 (467)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHc
Confidence 33333 35689999998877654
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=4.6e-16 Score=140.25 Aligned_cols=189 Identities=12% Similarity=0.131 Sum_probs=125.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-------------------cC-ceeccCchhhcc
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------------------IG-VKVLSDNNAVVE 70 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-------------------~g-~~~~~~~~~~~~ 70 (274)
|||+|||+|.||.+++..|.++|+ +|++| +|++++.+.+.+ .| +..++++.++++
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~G~----~V~~~-d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~ 75 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSARGH----EVIGV-DVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVL 75 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhc
Confidence 589999999999999999999999 99999 999999888765 23 555667777888
Q ss_pred CCCEEEEeeCccc----------HHHHHHHhccccCC---CCEEEEecCCCC----HHHHHHhhC---CCc-----eEEE
Q 024016 71 YSDVVVFSVKPQV----------VKDVAMQIRPLLSR---KKLLVSVAAGVK----LKDLQEWTG---HSR-----FIRV 125 (274)
Q Consensus 71 ~aDiIil~v~~~~----------~~~v~~~i~~~l~~---~~~vis~~~g~~----~~~l~~~~~---~~~-----~~~~ 125 (274)
+||+||+|||... ++++++++.+.+++ +++||+.+ ++. .+.+.+.++ +.. .+..
T Consensus 76 ~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~S-tv~~g~t~~~l~~~l~~~~g~~~~~~~~v~~ 154 (436)
T 1mv8_A 76 DSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRS-TVLPGTVNNVVIPLIEDCSGKKAGVDFGVGT 154 (436)
T ss_dssp TCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECS-CCCTTHHHHTHHHHHHHHHSCCBTTTBEEEE
T ss_pred cCCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeC-CcCCCchHHHHHHHHHHhcCcccCCcEEEEE
Confidence 9999999998544 89999999888888 88888653 333 233444332 111 1223
Q ss_pred cCCcHHhhcCCc---------eEEecCCCCCHHHHHHHHHHhhhcCCeEEcCccchhhHHHhhcchHHHHHH---HHHHH
Q 024016 126 MPNTPSAVGEAA---------TVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFL---AIEAL 193 (274)
Q Consensus 126 ~p~~~~~~~~g~---------~~i~~~~~~~~~~~~~v~~ll~~~g~~~~~~e~~~~~~~a~~~~~~~~~~~---~~~~l 193 (274)
.|. ....|. .++..+ .+++..+.++++++.+|..++.++-.......+. .+.|... +++.+
T Consensus 155 ~Pe---~~~~G~~~~~~~~~~~iv~G~--~~~~~~~~~~~l~~~~~~~v~~~~~~~ae~~Kl~--~N~~~a~~ia~~nE~ 227 (436)
T 1mv8_A 155 NPE---FLRESTAIKDYDFPPMTVIGE--LDKQTGDLLEEIYRELDAPIIRKTVEVAEMIKYT--CNVWHAAKVTFANEI 227 (436)
T ss_dssp CCC---CCCTTSHHHHHHSCSCEEEEE--SSHHHHHHHHHHHTTSSSCEEEEEHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred Ccc---cccccccchhccCCCEEEEEc--CCHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 332 112222 233322 2578889999999999965433332222233332 2444433 33334
Q ss_pred HHHHHHcCCCHHHHHHHHH
Q 024016 194 ADGGVAAGLPRELALGLAS 212 (274)
Q Consensus 194 ~e~~~~~Gl~~~~~~~~~~ 212 (274)
...+.+.|++.++..+.+.
T Consensus 228 ~~l~~~~Gid~~~v~~~~~ 246 (436)
T 1mv8_A 228 GNIAKAVGVDGREVMDVIC 246 (436)
T ss_dssp HHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHhc
Confidence 4446789999887666554
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-15 Score=139.12 Aligned_cols=197 Identities=13% Similarity=0.125 Sum_probs=125.1
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC--CCCCCCcEEEEeCCCHHHHHHHHHc-------------------CceeccCch
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKS--GVLPPDRICTAVHSNLKRRDAFESI-------------------GVKVLSDNN 66 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~--g~~~~~~v~v~~~r~~~~~~~l~~~-------------------g~~~~~~~~ 66 (274)
+++|||+|||+|.||.++|..|.++ |+ +|++| ||++++++.+.+. ++..++++.
T Consensus 7 ~~~mkI~VIG~G~vG~~~A~~La~~g~g~----~V~~~-D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~ 81 (481)
T 2o3j_A 7 GKVSKVVCVGAGYVGGPTCAMIAHKCPHI----TVTVV-DMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIP 81 (481)
T ss_dssp CCCCEEEEECCSTTHHHHHHHHHHHCTTS----EEEEE-CSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCC----EEEEE-ECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHH
Confidence 3467999999999999999999998 68 99999 9999999887641 244555666
Q ss_pred hhccCCCEEEEeeCcc---------------cHHHHHHHhccccCCCCEEEEecCCCCH---HHHHHhhCC-Cc------
Q 024016 67 AVVEYSDVVVFSVKPQ---------------VVKDVAMQIRPLLSRKKLLVSVAAGVKL---KDLQEWTGH-SR------ 121 (274)
Q Consensus 67 ~~~~~aDiIil~v~~~---------------~~~~v~~~i~~~l~~~~~vis~~~g~~~---~~l~~~~~~-~~------ 121 (274)
+++++||+||+|||.. .+.++++++.++++++++||..+ ++++ +.+.+.+.. ..
T Consensus 82 ~~~~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~S-Tv~~gt~~~l~~~l~~~~~~~~~~d 160 (481)
T 2o3j_A 82 KAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKS-TVPVKAAESIGCILREAQKNNENLK 160 (481)
T ss_dssp HHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECS-CCCTTHHHHHHHHHHHHTC----CC
T ss_pred HHhhcCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECC-CCCCCHHHHHHHHHHHhhCcCcCCc
Confidence 7788999999998632 27888889999999999888653 3432 344443321 11
Q ss_pred -eEEEcCCc--HHhh----cCCceEEecCCCC--CHHHHHHHHHHhhhcCC--eEEcCccchhhHHHhhcchHHHHHHHH
Q 024016 122 -FIRVMPNT--PSAV----GEAATVMSLGGTA--TEEDGELIGKLFGSVGK--IWRADEKLFDAITGLSGSGPAYIFLAI 190 (274)
Q Consensus 122 -~~~~~p~~--~~~~----~~g~~~i~~~~~~--~~~~~~~v~~ll~~~g~--~~~~~e~~~~~~~a~~~~~~~~~~~~~ 190 (274)
.+...|.. |... .....++..+... +++..+.++++++.++. .++.++-.-..+..+.. +.+.....
T Consensus 161 ~~v~~~Pe~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~~~ae~~Kl~~--N~~~a~~i 238 (481)
T 2o3j_A 161 FQVLSNPEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVA--NAFLAQRI 238 (481)
T ss_dssp EEEEECCCCCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEHHHHHHHHHHH--HHHHHHHH
T ss_pred eEEEeCcccccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCHHHHHHHHHHH--HHHHHHHH
Confidence 12334431 1110 1111333333211 12577899999999984 35544322233333322 33433333
Q ss_pred HHHH---HHHHHcCCCHHHHHHHHH
Q 024016 191 EALA---DGGVAAGLPRELALGLAS 212 (274)
Q Consensus 191 ~~l~---e~~~~~Gl~~~~~~~~~~ 212 (274)
..+. ..+.+.|++.++..+.+.
T Consensus 239 a~~nE~~~la~~~Gid~~~v~~~~~ 263 (481)
T 2o3j_A 239 SSINSISAVCEATGAEISEVAHAVG 263 (481)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHc
Confidence 3333 345689999998877665
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-15 Score=138.21 Aligned_cols=190 Identities=18% Similarity=0.166 Sum_probs=125.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc-------C-------------ceeccCchhh
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-------G-------------VKVLSDNNAV 68 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~-------g-------------~~~~~~~~~~ 68 (274)
-.|||+|||+|.||.++|..|.++|| +|++| ||++++++.+.+. | +..++++.++
T Consensus 7 ~~~~I~VIG~G~vG~~lA~~la~~G~----~V~~~-d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a 81 (478)
T 2y0c_A 7 GSMNLTIIGSGSVGLVTGACLADIGH----DVFCL-DVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAA 81 (478)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHH
T ss_pred CCceEEEECcCHHHHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHH
Confidence 35899999999999999999999999 99999 9999999888752 2 3455666677
Q ss_pred ccCCCEEEEeeCc----------ccHHHHHHHhccccCCCCEEEEecCCCCH---HHHHHhhC-----C---Cc-eEEEc
Q 024016 69 VEYSDVVVFSVKP----------QVVKDVAMQIRPLLSRKKLLVSVAAGVKL---KDLQEWTG-----H---SR-FIRVM 126 (274)
Q Consensus 69 ~~~aDiIil~v~~----------~~~~~v~~~i~~~l~~~~~vis~~~g~~~---~~l~~~~~-----~---~~-~~~~~ 126 (274)
+++||+||+|||. +.++++++++.++++++++||..+ ++++ +.+.+.+. + .. .+...
T Consensus 82 ~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~S-Tv~~gt~~~l~~~l~~~~~~g~~~~~~~v~~~ 160 (478)
T 2y0c_A 82 VAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKS-TVPVGTAERVRAAVAEELAKRGGDQMFSVVSN 160 (478)
T ss_dssp HHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS-CCCTTHHHHHHHHHHHHHHHTTCCCCEEEEEC
T ss_pred hhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeC-CcCCCchHHHHHHHHHHhcCCCCCccEEEEEC
Confidence 8899999999986 789999999999999998888764 6543 23332221 1 11 12233
Q ss_pred CCcHHhhcCCc---------eEEecCCCCCH----HHHHHHHHHhhhcCC---eEEcCccchhhHHHhhcchHHHHHHHH
Q 024016 127 PNTPSAVGEAA---------TVMSLGGTATE----EDGELIGKLFGSVGK---IWRADEKLFDAITGLSGSGPAYIFLAI 190 (274)
Q Consensus 127 p~~~~~~~~g~---------~~i~~~~~~~~----~~~~~v~~ll~~~g~---~~~~~e~~~~~~~a~~~~~~~~~~~~~ 190 (274)
|.. ...|. .++..+. ++ +..+.++++++.+++ .++.+.-.-..+..+. .+.+.....
T Consensus 161 Pe~---~~eG~~~~~~~~p~~iviG~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~--~N~~~a~~i 233 (478)
T 2y0c_A 161 PEF---LKEGAAVDDFTRPDRIVIGCD--DDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYA--ANAMLATRI 233 (478)
T ss_dssp CCC---CCTTCHHHHHHSCSCEEEECC--SSHHHHHHHHHHHHHTGGGGSSSCCEEEECHHHHHHHHHH--HHHHHHHHH
T ss_pred hhh---hcccceeeccCCCCEEEEEEC--CCcccHHHHHHHHHHHHHHhccCCeEEcCCHHHHHHHHHH--HHHHHHHHH
Confidence 321 22222 2333322 34 678899999998764 3444332222223332 233443333
Q ss_pred HHH---HHHHHHcCCCHHHHHHHH
Q 024016 191 EAL---ADGGVAAGLPRELALGLA 211 (274)
Q Consensus 191 ~~l---~e~~~~~Gl~~~~~~~~~ 211 (274)
..+ ...+.+.|++.++..+.+
T Consensus 234 a~~nE~~~la~~~Gid~~~v~~~i 257 (478)
T 2y0c_A 234 SFMNELANLADRFGADIEAVRRGI 257 (478)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 333 334678999998766544
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.66 E-value=4.4e-16 Score=136.76 Aligned_cols=94 Identities=19% Similarity=0.233 Sum_probs=80.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc-Cc--------------eeccCchhhccCC
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-GV--------------KVLSDNNAVVEYS 72 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~-g~--------------~~~~~~~~~~~~a 72 (274)
|++|||+|||+|.||..++..|.++|+ +|++| +|++++.+.+.+. +. ...+++.++++++
T Consensus 2 m~~mki~iiG~G~~G~~~a~~L~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (359)
T 1bg6_A 2 IESKTYAVLGLGNGGHAFAAYLALKGQ----SVLAW-DIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDA 76 (359)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTC
T ss_pred CCcCeEEEECCCHHHHHHHHHHHhCCC----EEEEE-eCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcC
Confidence 456899999999999999999999999 99999 9999998888764 32 2445666778899
Q ss_pred CEEEEeeCcccHHHHHHHhccccCCCCEEEEecC
Q 024016 73 DVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 73 DiIil~v~~~~~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
|+||+|+|+....+++.++.+.++++++||++.+
T Consensus 77 D~vi~~v~~~~~~~~~~~l~~~l~~~~~vv~~~~ 110 (359)
T 1bg6_A 77 DVILIVVPAIHHASIAANIASYISEGQLIILNPG 110 (359)
T ss_dssp SEEEECSCGGGHHHHHHHHGGGCCTTCEEEESSC
T ss_pred CEEEEeCCchHHHHHHHHHHHhCCCCCEEEEcCC
Confidence 9999999999999999999999999999998844
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-14 Score=123.98 Aligned_cols=152 Identities=14% Similarity=0.094 Sum_probs=122.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH-----------HcC--------------ceeccC
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE-----------SIG--------------VKVLSD 64 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~-----------~~g--------------~~~~~~ 64 (274)
..||+|||+|.||+.||..+..+|+ +|++| |++++..+... +.| ++.+++
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~G~----~V~l~-D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~ 80 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASGGF----RVKLY-DIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTN 80 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECC
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCC----eEEEE-ECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccc
Confidence 4589999999999999999999999 99999 99987654322 111 233456
Q ss_pred chhhccCCCEEEEeeCcc--cHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEe
Q 024016 65 NNAVVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMS 141 (274)
Q Consensus 65 ~~~~~~~aDiIil~v~~~--~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~ 141 (274)
..+++++||+|+-|+|-+ .-++++.+|....++++++-|.++++++..+.+.+. ..+++..|+..|...-. ..-++
T Consensus 81 l~~a~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is~ia~~~~~p~r~ig~HffNP~~~m~-LVEiv 159 (319)
T 3ado_A 81 LAEAVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFTGLAHVKQCIVAHPVNPPYYIP-LVELV 159 (319)
T ss_dssp HHHHTTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHHHHHTTCTTGGGEEEEEECSSTTTCC-EEEEE
T ss_pred hHhHhccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccchhhhhhccCCCcEEEecCCCCccccc-hHHhc
Confidence 677899999999999843 456899999999999999999999999999988765 35788899877766543 33456
Q ss_pred cCCCCCHHHHHHHHHHhhhcCCe-EEc
Q 024016 142 LGGTATEEDGELIGKLFGSVGKI-WRA 167 (274)
Q Consensus 142 ~~~~~~~~~~~~v~~ll~~~g~~-~~~ 167 (274)
+++.++++.++.+..+.+.+|+. +++
T Consensus 160 ~g~~Ts~~~~~~~~~~~~~~gk~pv~v 186 (319)
T 3ado_A 160 PHPETSPATVDRTHALMRKIGQSPVRV 186 (319)
T ss_dssp ECTTCCHHHHHHHHHHHHHTTCEEEEC
T ss_pred CCCCCcHHHHHHHHHHHHHhCCccCCc
Confidence 78888999999999999999975 544
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=8e-15 Score=130.72 Aligned_cols=192 Identities=14% Similarity=0.115 Sum_probs=121.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCc------------------eeccCchhhccCC
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV------------------KVLSDNNAVVEYS 72 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~------------------~~~~~~~~~~~~a 72 (274)
|||+|||+|.||.+++..|.+ || +|++| +|++++.+.+.+.+. ..++++.+.++++
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-G~----~V~~~-d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~a 74 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-QN----EVTIV-DILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEA 74 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TS----EEEEE-CSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHC
T ss_pred CEEEEECCCHHHHHHHHHHhC-CC----EEEEE-ECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCC
Confidence 589999999999999999999 98 99999 999999988876443 4445666778899
Q ss_pred CEEEEeeCcc-----------cHHHHHHHhccccCCCCEEEE-ecCCCC-HHHHHHhhCCCceEEEcCCc--HHh----h
Q 024016 73 DVVVFSVKPQ-----------VVKDVAMQIRPLLSRKKLLVS-VAAGVK-LKDLQEWTGHSRFIRVMPNT--PSA----V 133 (274)
Q Consensus 73 DiIil~v~~~-----------~~~~v~~~i~~~l~~~~~vis-~~~g~~-~~~l~~~~~~~~~~~~~p~~--~~~----~ 133 (274)
|+||+|||+. .++++++++.+ ++++++||. .+.+.. .+.+.+.++...+. ..|.. |.. .
T Consensus 75 Dvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~~v~-~~Pe~~~~G~a~~~~ 152 (402)
T 1dlj_A 75 ELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTDRII-FSPEFLRESKALYDN 152 (402)
T ss_dssp SEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCSCEE-ECCCCCCTTSTTHHH
T ss_pred CEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCCeEE-ECCccccCcchhhcc
Confidence 9999999876 58999999988 889999886 334443 35666666533333 33421 110 0
Q ss_pred cCCceEEecCCCC----CHHHHHHHHHHhhh-cCC---eEEcCccchhhHHHhhcchHHHHHHHH---HHHHHHHHHcCC
Q 024016 134 GEAATVMSLGGTA----TEEDGELIGKLFGS-VGK---IWRADEKLFDAITGLSGSGPAYIFLAI---EALADGGVAAGL 202 (274)
Q Consensus 134 ~~g~~~i~~~~~~----~~~~~~~v~~ll~~-~g~---~~~~~e~~~~~~~a~~~~~~~~~~~~~---~~l~e~~~~~Gl 202 (274)
.....++..+... ..+..+.+.++|.. ... .++.+.-....+..+. .+.+....+ .-+...+.+.|+
T Consensus 153 ~~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~--~N~~~a~~ia~~nE~~~l~~~~Gi 230 (402)
T 1dlj_A 153 LYPSRIIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLF--ANTYLALRVAYFNELDTYAESRKL 230 (402)
T ss_dssp HSCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEECHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCCEEEEeCCCcccchhHHHHHHHHHHHhhhhccCCceEEecChHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 1111133333211 11556778888865 322 3443332222222222 133333322 233334678999
Q ss_pred CHHHHHHHHH
Q 024016 203 PRELALGLAS 212 (274)
Q Consensus 203 ~~~~~~~~~~ 212 (274)
+.++..+.+.
T Consensus 231 d~~~v~~~~~ 240 (402)
T 1dlj_A 231 NSHMIIQGIS 240 (402)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHhc
Confidence 9998877664
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.3e-15 Score=135.11 Aligned_cols=194 Identities=14% Similarity=0.098 Sum_probs=126.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHH----HHHHHHH---------------------cC-cee
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKS-GVLPPDRICTAVHSNLK----RRDAFES---------------------IG-VKV 61 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~-g~~~~~~v~v~~~r~~~----~~~~l~~---------------------~g-~~~ 61 (274)
..|||+|||+|.||.+||..|.++ ||. +|++| ||+++ +++.+.+ .| +..
T Consensus 17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~---~V~~~-D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ 92 (478)
T 3g79_A 17 PIKKIGVLGMGYVGIPAAVLFADAPCFE---KVLGF-QRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFEC 92 (478)
T ss_dssp SCCEEEEECCSTTHHHHHHHHHHSTTCC---EEEEE-CCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCC---eEEEE-ECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEE
Confidence 468999999999999999999999 862 79999 99999 8877754 12 334
Q ss_pred ccCchhhccCCCEEEEeeCcc---------c---HHHHHHHhccccCCCCEEEEecCCCCH---HHHH-----HhhCC--
Q 024016 62 LSDNNAVVEYSDVVVFSVKPQ---------V---VKDVAMQIRPLLSRKKLLVSVAAGVKL---KDLQ-----EWTGH-- 119 (274)
Q Consensus 62 ~~~~~~~~~~aDiIil~v~~~---------~---~~~v~~~i~~~l~~~~~vis~~~g~~~---~~l~-----~~~~~-- 119 (274)
+++ .+++++||+||+|||.. + +..+.+++.++++++++||.. +++++ +.+. +..+.
T Consensus 93 ttd-~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~-STv~pgtt~~v~~~ile~~~g~~~ 170 (478)
T 3g79_A 93 TPD-FSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLE-STITPGTTEGMAKQILEEESGLKA 170 (478)
T ss_dssp ESC-GGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEEC-SCCCTTTTTTHHHHHHHHHHCCCB
T ss_pred eCc-HHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEe-CCCChHHHHHHHHHHHHHhcCCCc
Confidence 444 67889999999999743 2 566778888899999988865 45543 2222 22221
Q ss_pred -Cc-eEEEcCCc--HHhhcC---CceEEecCCCCCHHHHHHHHHHhhhc-CC-eEEcCccchhhHHHhhcchHHHHHHHH
Q 024016 120 -SR-FIRVMPNT--PSAVGE---AATVMSLGGTATEEDGELIGKLFGSV-GK-IWRADEKLFDAITGLSGSGPAYIFLAI 190 (274)
Q Consensus 120 -~~-~~~~~p~~--~~~~~~---g~~~i~~~~~~~~~~~~~v~~ll~~~-g~-~~~~~e~~~~~~~a~~~~~~~~~~~~~ 190 (274)
.. .+-..|.. +..... ...-++.| .+++..+.++++++.+ +. .+++++..-..++.++ .+.|.+..+
T Consensus 171 ~~d~~v~~~Pe~~~~G~a~~~~~~~~~Iv~G--~~~~~~~~~~~ly~~~~~~~~~~~~~~~~aE~~Kl~--~N~~~a~~I 246 (478)
T 3g79_A 171 GEDFALAHAPERVMVGRLLKNIREHDRIVGG--IDEASTKRAVELYSPVLTVGQVIPMSATAAEVTKTA--ENTFRDLQI 246 (478)
T ss_dssp TTTBEEEECCCCCCTTSHHHHHHHSCEEEEE--SSHHHHHHHHHHHGGGCSSCCEEEEEHHHHHHHHHH--HHHHHHHHH
T ss_pred CCceeEEeCCccCCccchhhhhcCCcEEEEe--CCHHHHHHHHHHHhhhccCCeEEeCCHHHHHHHHHH--HHHHHHHHH
Confidence 11 12233421 111100 11123333 2678889999999999 65 4665543333344443 245555544
Q ss_pred HHHHHH---HHHcCCCHHHHHHHHH
Q 024016 191 EALADG---GVAAGLPRELALGLAS 212 (274)
Q Consensus 191 ~~l~e~---~~~~Gl~~~~~~~~~~ 212 (274)
..+.|. +.+.|+|.++..+.+.
T Consensus 247 a~~nE~~~l~e~~GiD~~~v~~~~~ 271 (478)
T 3g79_A 247 AAINQLALYCEAMGINVYDVRTGVD 271 (478)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHC
Confidence 444444 5699999998887664
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.62 E-value=7.2e-16 Score=131.99 Aligned_cols=150 Identities=12% Similarity=0.092 Sum_probs=103.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCc---eeccCchhhc-cCCCEEEEeeCcccHH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV---KVLSDNNAVV-EYSDVVVFSVKPQVVK 85 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~---~~~~~~~~~~-~~aDiIil~v~~~~~~ 85 (274)
+|||+|||+|+||++++..|.++|+ +|++| +|+++..+.....|. .+..++.+.+ .++|+||+|||+++++
T Consensus 2 ~mkI~iiGaGa~G~~~a~~L~~~g~----~V~~~-~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk~~~~~ 76 (294)
T 3g17_A 2 SLSVAIIGPGAVGTTIAYELQQSLP----HTTLI-GRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKTHQLD 76 (294)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHHCT----TCEEE-ESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSCGGGHH
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC----eEEEE-EeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCCccCHH
Confidence 3799999999999999999999998 99999 998765432112232 2333445544 7899999999999999
Q ss_pred HHHHHhccccCCCCEEEEecCCCCHHHHHHhhCCCceEEEcCC------cHHhhcCCceEEecCCCCCHHHHHHHHHHhh
Q 024016 86 DVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPN------TPSAVGEAATVMSLGGTATEEDGELIGKLFG 159 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~~~~~~~~~p~------~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~ 159 (274)
++++++.+.++++++||++.+|+..+.. ++..+++..... .|..+..+...+..+ +.+..+.+.++|+
T Consensus 77 ~~l~~l~~~l~~~~~iv~~~nGi~~~~~---~~~~~v~~g~~~~~a~~~~pg~v~~~~~~~~~~---~~~~~~~l~~~l~ 150 (294)
T 3g17_A 77 AVIPHLTYLAHEDTLIILAQNGYGQLEH---IPFKNVCQAVVYISGQKKGDVVTHFRDYQLRIQ---DNALTRQFRDLVQ 150 (294)
T ss_dssp HHGGGHHHHEEEEEEEEECCSSCCCGGG---CCCSCEEECEEEEEEEEETTEEEEEEEEEEEEE---CSHHHHHHHHHTT
T ss_pred HHHHHHHHhhCCCCEEEEeccCcccHhh---CCCCcEEEEEEEEEEEEcCCCEEEECCCEEecC---ccHHHHHHHHHHH
Confidence 9999999988888999999999987654 554344332211 121111111222222 3466788889998
Q ss_pred hcCCeEEcCcc
Q 024016 160 SVGKIWRADEK 170 (274)
Q Consensus 160 ~~g~~~~~~e~ 170 (274)
..|...+.+++
T Consensus 151 ~~~~~~~~~~d 161 (294)
T 3g17_A 151 DSQIDIVLEAN 161 (294)
T ss_dssp TSSCEEEEESS
T ss_pred hCCCceEEChH
Confidence 88866554443
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-14 Score=129.60 Aligned_cols=189 Identities=16% Similarity=0.108 Sum_probs=123.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc-------------------C-ceeccCchhhc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-------------------G-VKVLSDNNAVV 69 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~-------------------g-~~~~~~~~~~~ 69 (274)
..|..|||+|.||.+||.+|.++|| +|++| ||++++++.+.+. | +..+++ +
T Consensus 11 ~~~~~ViGlGyvGlp~A~~La~~G~----~V~~~-D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd----~ 81 (431)
T 3ojo_A 11 GSKLTVVGLGYIGLPTSIMFAKHGV----DVLGV-DINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTT----P 81 (431)
T ss_dssp -CEEEEECCSTTHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESS----C
T ss_pred CCccEEEeeCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCc----h
Confidence 3689999999999999999999999 99999 9999999988762 1 222222 4
Q ss_pred cCCCEEEEeeCccc------------HHHHHHHhccccCCCCEEEEecCCCCHHH---HHHhh-C--CC----c-eEEEc
Q 024016 70 EYSDVVVFSVKPQV------------VKDVAMQIRPLLSRKKLLVSVAAGVKLKD---LQEWT-G--HS----R-FIRVM 126 (274)
Q Consensus 70 ~~aDiIil~v~~~~------------~~~v~~~i~~~l~~~~~vis~~~g~~~~~---l~~~~-~--~~----~-~~~~~ 126 (274)
++||+||+|||... +..+.+++.++++++++||.. +++++.. +.+.+ . +. . .+-..
T Consensus 82 ~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~-STV~pgtt~~v~~~i~e~~g~~~~~d~~v~~~ 160 (431)
T 3ojo_A 82 EASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVE-STIAPKTMDDFVKPVIENLGFTIGEDIYLVHC 160 (431)
T ss_dssp CCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEEC-SCCCTTHHHHTHHHHHHTTTCCBTTTEEEEEC
T ss_pred hhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEe-cCCChhHHHHHHHHHHHHcCCCcCCCeEEEEC
Confidence 58999999997432 677778899999999988855 4666432 22211 1 11 1 12233
Q ss_pred CC-----cHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCC-eEEcCccchhhHHHhhcchHHHHHHHHHHHHHH---H
Q 024016 127 PN-----TPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGK-IWRADEKLFDAITGLSGSGPAYIFLAIEALADG---G 197 (274)
Q Consensus 127 p~-----~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~-~~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~ 197 (274)
|. .........+-++.|. +++..+.++++++.++. .+++++..-..++.++ .+.|.+..+..+.|. +
T Consensus 161 Pe~~~~G~A~~~~~~p~~Iv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~~AE~~Kl~--~N~~~a~~Ia~~nE~~~l~ 236 (431)
T 3ojo_A 161 PERVLPGKILEELVHNNRIIGGV--TKACIEAGKRVYRTFVQGEMIETDARTAEMSKLM--ENTYRDVNIALANELTKIC 236 (431)
T ss_dssp CCCCCTTSHHHHHHHSCEEEEES--SHHHHHHHHHHHTTTCCSCEEEEEHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred CCcCCCcchhhcccCCCEEEEeC--CHHHHHHHHHHHHHHhCCcEEeCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 42 1111111122334342 68899999999999986 4665543334444443 245555444444444 5
Q ss_pred HHcCCCHHHHHHHHH
Q 024016 198 VAAGLPRELALGLAS 212 (274)
Q Consensus 198 ~~~Gl~~~~~~~~~~ 212 (274)
.+.|+|.++..+.+.
T Consensus 237 e~~GiD~~~v~~~~~ 251 (431)
T 3ojo_A 237 NNLNINVLDVIEMAN 251 (431)
T ss_dssp HHTTCCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHc
Confidence 689999998877654
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.51 E-value=7e-13 Score=116.63 Aligned_cols=158 Identities=16% Similarity=0.146 Sum_probs=108.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCC----CCCcEEEEeCCCHHH-----HHHHHH--------------cCceeccCchh
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVL----PPDRICTAVHSNLKR-----RDAFES--------------IGVKVLSDNNA 67 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~----~~~~v~v~~~r~~~~-----~~~l~~--------------~g~~~~~~~~~ 67 (274)
.||+|||+|.||+++|..|.++|+- ...+|++| .|+++. .+.+.+ .++.+.+|..+
T Consensus 35 ~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw-~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~ 113 (391)
T 4fgw_A 35 FKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMW-VFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLID 113 (391)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEE-CCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHH
T ss_pred CeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEE-EcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHH
Confidence 5999999999999999999998750 00149999 887652 233322 13456677888
Q ss_pred hccCCCEEEEeeCcccHHHHHHHhccccCCCCEEEEecCCCCH---------HHHHHhhCCCce-EEEcCCcHHhhcCCc
Q 024016 68 VVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL---------KDLQEWTGHSRF-IRVMPNTPSAVGEAA 137 (274)
Q Consensus 68 ~~~~aDiIil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~---------~~l~~~~~~~~~-~~~~p~~~~~~~~g~ 137 (274)
+++++|+||++||.+.++++++++.++++++..+|++++|+.. +.+.+.++ .++ +-.-|+++.++..+.
T Consensus 114 al~~ad~ii~avPs~~~r~~l~~l~~~~~~~~~iv~~~KGie~~~~~~~~~se~i~e~~~-~~~~vLsGPs~A~EVa~~~ 192 (391)
T 4fgw_A 114 SVKDVDIIVFNIPHQFLPRICSQLKGHVDSHVRAISCLKGFEVGAKGVQLLSSYITEELG-IQCGALSGANIATEVAQEH 192 (391)
T ss_dssp HHTTCSEEEECSCGGGHHHHHHHHTTTSCTTCEEEECCCSCEEETTEEECHHHHHHHHHC-CEEEEEECSCCHHHHHTTC
T ss_pred HHhcCCEEEEECChhhhHHHHHHhccccCCCceeEEeccccccccccchhHHHHHHHHhC-ccceeccCCchHHHhhcCC
Confidence 9999999999999999999999999999999999999999752 23444444 233 234588888887664
Q ss_pred -eEEecC-CC-------CCHHHHHHHHHHhhhcCCeEEcCcc
Q 024016 138 -TVMSLG-GT-------ATEEDGELIGKLFGSVGKIWRADEK 170 (274)
Q Consensus 138 -~~i~~~-~~-------~~~~~~~~v~~ll~~~g~~~~~~e~ 170 (274)
+.++.. .+ .++...+.++.+|..-...++.+.+
T Consensus 193 pta~~iA~~~~~~~~~~~~~~~a~~~~~lf~~~~frvy~s~D 234 (391)
T 4fgw_A 193 WSETTVAYHIPKDFRGEGKDVDHKVLKALFHRPYFHVSVIED 234 (391)
T ss_dssp CEEEEEECCCCTTCCCSSSSCCHHHHHHHHCBTTEEEEEESC
T ss_pred CceEEEEecChhhhhhhhHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 333221 11 1122346677887664434455544
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.2e-11 Score=106.72 Aligned_cols=205 Identities=17% Similarity=0.145 Sum_probs=141.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH------HHHHHHHHcCceeccCchhhccCCCEEEEeeCcc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL------KRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ 82 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~------~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~ 82 (274)
+.+||+|||+|+-|.+-|.+|.++|. +|.+- -|.. .+.+++.+.|.++. +..|+++.+|+|++.+|+.
T Consensus 36 kgK~IaVIGyGsQG~AqAlNLRDSGv----~V~Vg-lr~~s~~e~~~S~~~A~~~Gf~v~-~~~eA~~~ADvV~~L~PD~ 109 (491)
T 3ulk_A 36 QGKKVVIVGCGAQGLNQGLNMRDSGL----DISYA-LRKEAIAEKRASWRKATENGFKVG-TYEELIPQADLVINLTPDK 109 (491)
T ss_dssp TTSEEEEESCSHHHHHHHHHHHHTTC----EEEEE-ECHHHHHTTCHHHHHHHHTTCEEE-EHHHHGGGCSEEEECSCGG
T ss_pred cCCEEEEeCCChHhHHHHhHHHhcCC----cEEEE-eCCCCcccccchHHHHHHCCCEec-CHHHHHHhCCEEEEeCChh
Confidence 45899999999999999999999999 99887 6632 34456666888875 6889999999999999999
Q ss_pred cHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHh-------hcCCceEEecC---CCCCHHHH
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSA-------VGEAATVMSLG---GTATEEDG 151 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~-------~~~g~~~i~~~---~~~~~~~~ 151 (274)
.-.++++.|.|++++|+.+. .+.|..+..-.-..| +..++-+-|..|.+ .|.|+..++.- .+.+-.+.
T Consensus 110 ~q~~vy~~I~p~lk~G~~L~-faHGFnI~~~~i~pp~dvdVimVAPKgpG~~VR~~y~~G~GvP~liAVhqeqD~sG~a~ 188 (491)
T 3ulk_A 110 QHSDVVRTVQPLMKDGAALG-YSHGFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPENDPKGEGM 188 (491)
T ss_dssp GHHHHHHHHGGGSCTTCEEE-ESSCHHHHTTCCCCCTTSEEEEEEESSCHHHHHHHHHTTCCCCEEEEECGGGCTTSCHH
T ss_pred hHHHHHHHHHhhCCCCCEEE-ecCcccccccccccCCCcceEEeCCCCCcHHHHHHHHcCCCCceEEEEEeCCCCchhHH
Confidence 99999999999999999877 566764432111112 46677777876653 25676554422 23345667
Q ss_pred HHHHHHhhhcCCe----EEcC---cc---chhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q 024016 152 ELIGKLFGSVGKI----WRAD---EK---LFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASM 221 (274)
Q Consensus 152 ~~v~~ll~~~g~~----~~~~---e~---~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~ 221 (274)
+....+...+|.. +..+ |. .+..-+.++| .+..++.+..|.+++.|.+++.+..+....++-...+
T Consensus 189 ~~AlayA~aiG~~raGvieTTF~eEtetDLfGEQaVLcG----gl~~li~agFetLveaGy~P~~a~~~~~~e~klIvdl 264 (491)
T 3ulk_A 189 AIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCG----MLQAGSLLCFDKLVEEGTDPAYAEKLIQFGWETITEA 264 (491)
T ss_dssp HHHHHHHHHHTGGGTCEEECCHHHHHHHHHHHHHTTTTH----HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcCceeeccHHHHHHHHHHhhHHHHHH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHH
Confidence 7888888888842 2222 22 2333334443 3344566667888999999988776555444444444
Q ss_pred HHh
Q 024016 222 VTK 224 (274)
Q Consensus 222 ~~~ 224 (274)
+.+
T Consensus 265 i~e 267 (491)
T 3ulk_A 265 LKQ 267 (491)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2e-11 Score=115.80 Aligned_cols=155 Identities=19% Similarity=0.207 Sum_probs=122.1
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH---------------c-------CceeccCc
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES---------------I-------GVKVLSDN 65 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~---------------~-------g~~~~~~~ 65 (274)
+...||+|||+|.||+.||..+..+|+ +|+++ |++++.++...+ . .++..++
T Consensus 314 ~~i~~v~ViGaG~MG~gIA~~~a~aG~----~V~l~-D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~- 387 (742)
T 3zwc_A 314 QPVSSVGVLGLGTMGRGIAISFARVGI----SVVAV-ESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSS- 387 (742)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHTTTC----EEEEE-CSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESC-
T ss_pred ccccEEEEEcccHHHHHHHHHHHhCCC----chhcc-cchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCc-
Confidence 345799999999999999999999999 99999 999976543221 0 1223333
Q ss_pred hhhccCCCEEEEeeCc--ccHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEec
Q 024016 66 NAVVEYSDVVVFSVKP--QVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSL 142 (274)
Q Consensus 66 ~~~~~~aDiIil~v~~--~~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~ 142 (274)
.+.+.+||+||-||+- +.-++++.++....++++++-|.++++++..+.+.+. ..+++..|...|...-. ..-++.
T Consensus 388 ~~~l~~aDlVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSsl~i~~ia~~~~~p~r~ig~HFfnP~~~m~-LVEvi~ 466 (742)
T 3zwc_A 388 TKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMR-LLEVIP 466 (742)
T ss_dssp GGGGGSCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEECCSSTTTCC-EEEEEE
T ss_pred HHHHhhCCEEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCcCChHHHHhhcCCccccccccccCCCCCCc-eEEEec
Confidence 3457899999999974 3456889999999999999999999999999988765 35788888877766533 333556
Q ss_pred CCCCCHHHHHHHHHHhhhcCCe-EEcCc
Q 024016 143 GGTATEEDGELIGKLFGSVGKI-WRADE 169 (274)
Q Consensus 143 ~~~~~~~~~~~v~~ll~~~g~~-~~~~e 169 (274)
++.++++.++.+..+.+.+|+. +++.+
T Consensus 467 g~~Ts~e~~~~~~~~~~~lgK~pV~vkd 494 (742)
T 3zwc_A 467 SRYSSPTTIATVMSLSKKIGKIGVVVGN 494 (742)
T ss_dssp CSSCCHHHHHHHHHHHHHTTCEEEECCC
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCcccCC
Confidence 7888999999999999999986 66543
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-12 Score=119.68 Aligned_cols=164 Identities=12% Similarity=0.149 Sum_probs=110.4
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcc-cH
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VV 84 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~-~~ 84 (274)
.....++|||||+|+||+++|++|...|+ +|++| ||++.. +...+.|+... +..+++++||+|++|+|+. ..
T Consensus 138 ~~l~g~~vgIIG~G~IG~~vA~~l~~~G~----~V~~~-d~~~~~-~~a~~~g~~~~-~l~e~~~~aDvV~l~~P~~~~t 210 (529)
T 1ygy_A 138 TEIFGKTVGVVGLGRIGQLVAQRIAAFGA----YVVAY-DPYVSP-ARAAQLGIELL-SLDDLLARADFISVHLPKTPET 210 (529)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHTTTC----EEEEE-CTTSCH-HHHHHHTCEEC-CHHHHHHHCSEEEECCCCSTTT
T ss_pred cccCCCEEEEEeeCHHHHHHHHHHHhCCC----EEEEE-CCCCCh-hHHHhcCcEEc-CHHHHHhcCCEEEECCCCchHH
Confidence 34566899999999999999999999998 99999 998743 34455787765 7888899999999999976 67
Q ss_pred HHHHHH-hccccCCCCEEEEecCCCC--HHHHHHhhCCCce----EEEcCCcHH----hhcCCceEEecCCC-CCHHHHH
Q 024016 85 KDVAMQ-IRPLLSRKKLLVSVAAGVK--LKDLQEWTGHSRF----IRVMPNTPS----AVGEAATVMSLGGT-ATEEDGE 152 (274)
Q Consensus 85 ~~v~~~-i~~~l~~~~~vis~~~g~~--~~~l~~~~~~~~~----~~~~p~~~~----~~~~g~~~i~~~~~-~~~~~~~ 152 (274)
..++.+ +.+.+++++++|+++.|-. ...+.+.+...++ ..+++.+|. .......++++... .+.+..+
T Consensus 211 ~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~vilTPh~~~~t~ea~~ 290 (529)
T 1ygy_A 211 AGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQD 290 (529)
T ss_dssp TTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEEECSSCSSCBHHHHH
T ss_pred HHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCCEEEccccCCCCHHHHH
Confidence 777754 6677889999999876543 3445555542222 122333332 11222345666544 4566655
Q ss_pred H-----HHHHhhhcCC-e----EEcC-ccchhhHH
Q 024016 153 L-----IGKLFGSVGK-I----WRAD-EKLFDAIT 176 (274)
Q Consensus 153 ~-----v~~ll~~~g~-~----~~~~-e~~~~~~~ 176 (274)
. ++++.+.++. . +.++ ++.||.+.
T Consensus 291 ~~~~~~~~~l~~~l~~~~~~~~v~~~~~~~hd~i~ 325 (529)
T 1ygy_A 291 RAGTDVAESVRLALAGEFVPDAVNVGGGVVNEEVA 325 (529)
T ss_dssp HHHHHHHHHHHHHHTTCCCTTBCSCCSTTSCTTTT
T ss_pred HHHHHHHHHHHHHHcCCCCCcccCCcccccchhhh
Confidence 4 5566665553 2 4456 56777654
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-12 Score=117.12 Aligned_cols=94 Identities=16% Similarity=0.220 Sum_probs=77.9
Q ss_pred CeEEEEcccHHHHHHHHHHHh-CCCCCCCcEEEEeC---CCHHHHHHH-HHcC------------c-------eeccCch
Q 024016 11 FILGFIGAGKMAESIAKGVAK-SGVLPPDRICTAVH---SNLKRRDAF-ESIG------------V-------KVLSDNN 66 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~-~g~~~~~~v~v~~~---r~~~~~~~l-~~~g------------~-------~~~~~~~ 66 (274)
|||+|||+|.||++++..|.+ +|+ +|++| + |++++.+.+ .+.| . .+.+++.
T Consensus 3 mkI~ViGaG~~G~~~a~~La~~~G~----~V~~~-~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (404)
T 3c7a_A 3 VKVCVCGGGNGAHTLSGLAASRDGV----EVRVL-TLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPE 77 (404)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSTTE----EEEEE-CCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHH
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCC----EEEEE-eCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHH
Confidence 699999999999999999988 599 99999 9 888888774 3333 1 1344566
Q ss_pred hhccCCCEEEEeeCcccHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 67 AVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 67 ~~~~~aDiIil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
++++++|+||+|||++..+++++++.+.++++++|++..++..
T Consensus 78 ~a~~~aD~Vilav~~~~~~~v~~~l~~~l~~~~ivv~~~~~~G 120 (404)
T 3c7a_A 78 IAISGADVVILTVPAFAHEGYFQAMAPYVQDSALIVGLPSQAG 120 (404)
T ss_dssp HHHTTCSEEEECSCGGGHHHHHHHHTTTCCTTCEEEETTCCTT
T ss_pred HHhCCCCEEEEeCchHHHHHHHHHHHhhCCCCcEEEEcCCCcc
Confidence 7788999999999999999999999999999999998655554
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=99.34 E-value=2.3e-12 Score=112.53 Aligned_cols=108 Identities=16% Similarity=0.219 Sum_probs=85.7
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHH-hCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcc-c
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVA-KSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-V 83 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~-~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~-~ 83 (274)
.....++|||||+|+||+.+++.+. ..|+ +|++| +|++++.+...+.|+....+..+++++||+|++++|.. .
T Consensus 159 ~~l~g~~vgIIG~G~IG~~vA~~l~~~~G~----~V~~~-d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~ 233 (348)
T 2w2k_A 159 HNPRGHVLGAVGLGAIQKEIARKAVHGLGM----KLVYY-DVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKL 233 (348)
T ss_dssp CCSTTCEEEEECCSHHHHHHHHHHHHTTCC----EEEEE-CSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGG
T ss_pred cCCCCCEEEEEEECHHHHHHHHHHHHhcCC----EEEEE-CCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChH
Confidence 4456689999999999999999999 8998 99999 99887666555568776667788889999999999864 3
Q ss_pred HHHHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 84 VKDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 84 ~~~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
.+.++ .++.+.++++.++|+++.| +..+.+.+.+.
T Consensus 234 t~~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~ 271 (348)
T 2w2k_A 234 THHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALK 271 (348)
T ss_dssp GTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred HHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHH
Confidence 55555 3455567899999988776 55667777665
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.7e-12 Score=112.66 Aligned_cols=107 Identities=15% Similarity=0.262 Sum_probs=83.9
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcc-cH
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VV 84 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~-~~ 84 (274)
.....+||||||+|+||..+++.|...|+ +|++| +|++++.+.+.+.|+... +..+++++||+|++++|+. ..
T Consensus 151 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~----~V~~~-d~~~~~~~~~~~~g~~~~-~l~e~l~~aDvVi~~vp~~~~t 224 (330)
T 2gcg_A 151 YGLTQSTVGIIGLGRIGQAIARRLKPFGV----QRFLY-TGRQPRPEEAAEFQAEFV-STPELAAQSDFIVVACSLTPAT 224 (330)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHGGGTC----CEEEE-ESSSCCHHHHHTTTCEEC-CHHHHHHHCSEEEECCCCCTTT
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHHCCC----EEEEE-CCCCcchhHHHhcCceeC-CHHHHHhhCCEEEEeCCCChHH
Confidence 34566899999999999999999999998 99999 998776666666777765 7788889999999999864 44
Q ss_pred HHHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 85 KDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 85 ~~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
+.++ .++.+.++++.++|+++.| +..+.+.+.+.
T Consensus 225 ~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~ 261 (330)
T 2gcg_A 225 EGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALA 261 (330)
T ss_dssp TTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred HHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHH
Confidence 5554 3455667899999988766 45566666554
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=3.5e-12 Score=110.14 Aligned_cols=106 Identities=13% Similarity=0.113 Sum_probs=83.1
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC-CHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcc-cH
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r-~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~-~~ 84 (274)
....++|||||+|+||++++++|...|+ +|++| +| ++++ +...+.|+....+..+++++||+|++++|.. ..
T Consensus 143 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~----~V~~~-d~~~~~~-~~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~t 216 (320)
T 1gdh_A 143 KLDNKTLGIYGFGSIGQALAKRAQGFDM----DIDYF-DTHRASS-SDEASYQATFHDSLDSLLSVSQFFSLNAPSTPET 216 (320)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTTC----EEEEE-CSSCCCH-HHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTT
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC----EEEEE-CCCCcCh-hhhhhcCcEEcCCHHHHHhhCCEEEEeccCchHH
Confidence 4456899999999999999999999998 99999 99 8765 3444578776657888899999999999854 35
Q ss_pred HHHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 85 KDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 85 ~~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
+.++ .+..+.++++.++|+++.| +..+.+.+.+.
T Consensus 217 ~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~ 253 (320)
T 1gdh_A 217 RYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALE 253 (320)
T ss_dssp TTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred HhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHH
Confidence 5555 3455678899999998766 45566666664
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=99.31 E-value=2.5e-12 Score=108.89 Aligned_cols=122 Identities=11% Similarity=0.191 Sum_probs=89.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCcccHHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~~~~~ 86 (274)
.+.++|+|||+|.||.+++..|.+.|+ +|++| +|++++++.+.+ .|+...++..+.++++|+||.|+|+....+
T Consensus 127 ~~~~~v~iiGaG~~g~aia~~L~~~g~----~V~v~-~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDiVi~atp~~~~~~ 201 (275)
T 2hk9_A 127 VKEKSILVLGAGGASRAVIYALVKEGA----KVFLW-NRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIVNTTSVGLKDE 201 (275)
T ss_dssp GGGSEEEEECCSHHHHHHHHHHHHHTC----EEEEE-CSSHHHHHHHTTTSCEEECSCGGGTGGGCSEEEECSSTTSSTT
T ss_pred cCCCEEEEECchHHHHHHHHHHHHcCC----EEEEE-ECCHHHHHHHHHHcCCeeehhHHhhhcCCCEEEEeCCCCCCCC
Confidence 345799999999999999999999998 99999 999999888876 577766677788889999999999775432
Q ss_pred HHHHh-ccccCCCCEEEEecCCCCHHHHHHhhCCCceEEEcCCcHHhhcCCc
Q 024016 87 VAMQI-RPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNTPSAVGEAA 137 (274)
Q Consensus 87 v~~~i-~~~l~~~~~vis~~~g~~~~~l~~~~~~~~~~~~~p~~~~~~~~g~ 137 (274)
+...+ .+.++++++++++.. .....++.... ...+++|+.+..++++.
T Consensus 202 ~~~~i~~~~l~~g~~viDv~~-~~t~ll~~a~~--~g~~~v~g~~mlv~q~~ 250 (275)
T 2hk9_A 202 DPEIFNYDLIKKDHVVVDIIY-KETKLLKKAKE--KGAKLLDGLPMLLWQGI 250 (275)
T ss_dssp CCCSSCGGGCCTTSEEEESSS-SCCHHHHHHHH--TTCEEECSHHHHHHHHH
T ss_pred CCCCCCHHHcCCCCEEEEcCC-ChHHHHHHHHH--CcCEEECCHHHHHHHHH
Confidence 11112 245788999998876 44443433222 22356788777665543
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=99.30 E-value=1e-10 Score=104.41 Aligned_cols=197 Identities=13% Similarity=0.141 Sum_probs=121.9
Q ss_pred CCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-------------------c-Cceecc
Q 024016 4 FPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------------------I-GVKVLS 63 (274)
Q Consensus 4 ~~~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-------------------~-g~~~~~ 63 (274)
.|...++.+|+|||+|-+|..+|..|.+.|| +|+.+ |.++++.+.+.+ . .+..++
T Consensus 15 ~p~~~~m~~IaViGlGYVGLp~A~~~A~~G~----~V~g~-Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt 89 (444)
T 3vtf_A 15 VPRGSHMASLSVLGLGYVGVVHAVGFALLGH----RVVGY-DVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAE 89 (444)
T ss_dssp CCTTCCCCEEEEECCSHHHHHHHHHHHHHTC----EEEEE-CSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECS
T ss_pred CCCCCCCCEEEEEccCHHHHHHHHHHHhCCC----cEEEE-ECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEc
Confidence 4666677899999999999999999999999 99999 999999887753 1 234566
Q ss_pred CchhhccCCCEEEEeeC-c---------ccHHHHHHHhccccC---CCCEEEEecCCCCH---HH-HHHhh----CCCce
Q 024016 64 DNNAVVEYSDVVVFSVK-P---------QVVKDVAMQIRPLLS---RKKLLVSVAAGVKL---KD-LQEWT----GHSRF 122 (274)
Q Consensus 64 ~~~~~~~~aDiIil~v~-~---------~~~~~v~~~i~~~l~---~~~~vis~~~g~~~---~~-l~~~~----~~~~~ 122 (274)
+..++++.+|++|+||| | ..+..+.+.|.++++ ++++||-- +++++ +. ....+ ++..+
T Consensus 90 ~~~~ai~~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~e-STVppGtte~~~~~~l~~~~~~~~f 168 (444)
T 3vtf_A 90 SAEEAVAATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVK-STVPPGTTEGLVARAVAEEAGGVKF 168 (444)
T ss_dssp SHHHHHHTSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEEC-SCCCTTTTTTHHHHHHHTTTTTCCC
T ss_pred CHHHHHhcCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEe-CCCCCchHHHHHHHHHHHhCCCCCc
Confidence 77888899999999996 2 136667777766664 56777732 32322 22 22222 22222
Q ss_pred -EEEcCC-----cHHhh-cCCceEEecCCCCCHHHHHHHHHHhhhcCCe-EEcCccchhhHHHhhcchHHHHH---HHHH
Q 024016 123 -IRVMPN-----TPSAV-GEAATVMSLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIF---LAIE 191 (274)
Q Consensus 123 -~~~~p~-----~~~~~-~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~---~~~~ 191 (274)
+...|. ..... ..-.-++..+ .++...+.+.++++.+... ++.+.. -..++.+.. +.|.+ .+++
T Consensus 169 ~v~~~PErl~eG~a~~d~~~~~riViG~--~~~~a~~~~~~ly~~~~~~~~~~~~~-~AE~~Kl~e--N~~ravnIa~~N 243 (444)
T 3vtf_A 169 SVASNPEFLREGSALEDFFKPDRIVIGA--GDERAASFLLDVYKAVDAPKLVMKPR-EAELVKYAS--NVFLALKISFAN 243 (444)
T ss_dssp EEEECCCCCCTTSHHHHHHSCSCEEEEE--SSHHHHHHHHHHTTTSCSCEEEECHH-HHHHHHHHH--HHHHHHHHHHHH
T ss_pred eeecCcccccCCccccccccCCcEEEcC--CCHHHHHHHHHHHhccCCCEEEechh-HHHHHHHHH--HHHHHHHHHHHH
Confidence 223332 21111 1111123222 2567788899999888765 444422 122233321 33432 3455
Q ss_pred HHHHHHHHcCCCHHHHHHHH
Q 024016 192 ALADGGVAAGLPRELALGLA 211 (274)
Q Consensus 192 ~l~e~~~~~Gl~~~~~~~~~ 211 (274)
.++..+.+.|+|..+..+.+
T Consensus 244 Ela~ice~~GiDv~eV~~a~ 263 (444)
T 3vtf_A 244 EVGLLAKRLGVDTYRVFEAV 263 (444)
T ss_dssp HHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHh
Confidence 56666789999988766654
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=99.26 E-value=9.4e-12 Score=108.41 Aligned_cols=108 Identities=17% Similarity=0.246 Sum_probs=85.0
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCc-ccH
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVV 84 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~-~~~ 84 (274)
.....++|||||+|+||..+|+.|...|+ +|.+| +|++...+.+.+.|+....+..+++++||+|++++|. ...
T Consensus 160 ~~l~gktvGIIG~G~IG~~vA~~l~~~G~----~V~~~-dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t 234 (351)
T 3jtm_A 160 YDLEGKTIGTVGAGRIGKLLLQRLKPFGC----NLLYH-DRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKT 234 (351)
T ss_dssp CCSTTCEEEEECCSHHHHHHHHHHGGGCC----EEEEE-CSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTTT
T ss_pred ccccCCEEeEEEeCHHHHHHHHHHHHCCC----EEEEe-CCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHH
Confidence 34567899999999999999999999998 99999 9987666666667887777889999999999999984 344
Q ss_pred HHHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 85 KDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 85 ~~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
+.++ .+....++++.++|+++.| +..+.+.+.+.
T Consensus 235 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~ 271 (351)
T 3jtm_A 235 RGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVE 271 (351)
T ss_dssp TTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred HHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHH
Confidence 4444 3455567899999988754 34556666664
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=5.4e-12 Score=109.64 Aligned_cols=105 Identities=19% Similarity=0.242 Sum_probs=81.7
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCccc-HH
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-VK 85 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~-~~ 85 (274)
....++|||||+|+||..+++.|...|+ +|++| +|++++ +...+.|+.. .+..+++++||+|++|+|... .+
T Consensus 147 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~----~V~~~-d~~~~~-~~~~~~g~~~-~~l~~~l~~aDvVil~vp~~~~t~ 219 (334)
T 2dbq_A 147 DVYGKTIGIIGLGRIGQAIAKRAKGFNM----RILYY-SRTRKE-EVERELNAEF-KPLEDLLRESDFVVLAVPLTRETY 219 (334)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCH-HHHHHHCCEE-CCHHHHHHHCSEEEECCCCCTTTT
T ss_pred CCCCCEEEEEccCHHHHHHHHHHHhCCC----EEEEE-CCCcch-hhHhhcCccc-CCHHHHHhhCCEEEECCCCChHHH
Confidence 4556899999999999999999999998 99999 999876 5455567765 477788899999999998654 55
Q ss_pred HHH-HHhccccCCCCEEEEecCCCC--HHHHHHhhC
Q 024016 86 DVA-MQIRPLLSRKKLLVSVAAGVK--LKDLQEWTG 118 (274)
Q Consensus 86 ~v~-~~i~~~l~~~~~vis~~~g~~--~~~l~~~~~ 118 (274)
.++ .++.+.+++++++|+++.|.. .+.+.+.+.
T Consensus 220 ~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~ 255 (334)
T 2dbq_A 220 HLINEERLKLMKKTAILINIARGKVVDTNALVKALK 255 (334)
T ss_dssp TCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred HhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHH
Confidence 555 355566889999999876643 345655554
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-11 Score=108.45 Aligned_cols=108 Identities=13% Similarity=0.175 Sum_probs=84.2
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCc-ccH
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVV 84 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~-~~~ 84 (274)
.....++|||||+|+||..+|++|...|+ +|++| +|++.+.+...+.|+....+..+++++||+|++++|. ...
T Consensus 187 ~~l~gktvGIIGlG~IG~~vA~~l~a~G~----~V~~~-d~~~~~~~~~~~~G~~~~~~l~ell~~aDvV~l~~Plt~~t 261 (393)
T 2nac_A 187 YDLEAMHVGTVAAGRIGLAVLRRLAPFDV----HLHYT-DRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPET 261 (393)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHGGGTC----EEEEE-CSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTT
T ss_pred ccCCCCEEEEEeECHHHHHHHHHHHhCCC----EEEEE-cCCccchhhHhhcCceecCCHHHHHhcCCEEEEecCCchHH
Confidence 34567899999999999999999999998 99999 9987655555557887666788999999999999984 345
Q ss_pred HHHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 85 KDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 85 ~~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
+.++ .+....++++.++|+++.| +..+.+.+.+.
T Consensus 262 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~ 298 (393)
T 2nac_A 262 EHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALE 298 (393)
T ss_dssp TTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred HHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHH
Confidence 5555 3455678899999998765 33455666664
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.5e-11 Score=107.85 Aligned_cols=108 Identities=17% Similarity=0.222 Sum_probs=84.9
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCc-EEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcc-c
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDR-ICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-V 83 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~-v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~-~ 83 (274)
.....++|||||+|+||..+++.|...|+ + |++| +|++.+.+...+.|+....+..+++++||+|++++|.. .
T Consensus 160 ~~l~g~tvgIIG~G~IG~~vA~~l~~~G~----~~V~~~-d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~ 234 (364)
T 2j6i_A 160 YDIEGKTIATIGAGRIGYRVLERLVPFNP----KELLYY-DYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAG 234 (364)
T ss_dssp CCSTTCEEEEECCSHHHHHHHHHHGGGCC----SEEEEE-CSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCSTT
T ss_pred ccCCCCEEEEECcCHHHHHHHHHHHhCCC----cEEEEE-CCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCChH
Confidence 44567899999999999999999999998 8 9999 99876666666678776667889999999999999864 4
Q ss_pred HHHHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 84 VKDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 84 ~~~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
.+.++ .+..+.++++.++|+++.| +..+.+.+.+.
T Consensus 235 t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~ 272 (364)
T 2j6i_A 235 TKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALE 272 (364)
T ss_dssp TTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred HHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHHH
Confidence 55544 3455668899999988765 34556666664
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=5.9e-12 Score=109.08 Aligned_cols=103 Identities=15% Similarity=0.161 Sum_probs=80.3
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcc-cH
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VV 84 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~-~~ 84 (274)
.....++|||||+|+||+++|+.|...|+ +|++| +|++++. .|.....+..+++++||+|++++|+. ..
T Consensus 160 ~~l~g~~vgIIG~G~iG~~vA~~l~~~G~----~V~~~-dr~~~~~-----~g~~~~~~l~ell~~aDvVil~vP~~~~t 229 (333)
T 3ba1_A 160 TKFSGKRVGIIGLGRIGLAVAERAEAFDC----PISYF-SRSKKPN-----TNYTYYGSVVELASNSDILVVACPLTPET 229 (333)
T ss_dssp CCCTTCCEEEECCSHHHHHHHHHHHTTTC----CEEEE-CSSCCTT-----CCSEEESCHHHHHHTCSEEEECSCCCGGG
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-CCCchhc-----cCceecCCHHHHHhcCCEEEEecCCChHH
Confidence 34566899999999999999999999998 99999 9987653 25655667888899999999999974 46
Q ss_pred HHHH-HHhccccCCCCEEEEecCCCC--HHHHHHhhC
Q 024016 85 KDVA-MQIRPLLSRKKLLVSVAAGVK--LKDLQEWTG 118 (274)
Q Consensus 85 ~~v~-~~i~~~l~~~~~vis~~~g~~--~~~l~~~~~ 118 (274)
+.++ .+..+.+++++++|+++.|.. .+.+.+.+.
T Consensus 230 ~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~ 266 (333)
T 3ba1_A 230 THIINREVIDALGPKGVLINIGRGPHVDEPELVSALV 266 (333)
T ss_dssp TTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred HHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHH
Confidence 6655 345556789999999877643 356665554
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.1e-11 Score=105.70 Aligned_cols=103 Identities=16% Similarity=0.212 Sum_probs=70.0
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccH
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~ 84 (274)
.....+||||||+|+||+++|+++...|+ +|.+| +|++++ ..+.....+..+++++||+|++++| ....
T Consensus 167 ~~l~gktiGIIGlG~IG~~vA~~l~~~G~----~V~~~-dr~~~~-----~~~~~~~~sl~ell~~aDvVil~vP~t~~t 236 (340)
T 4dgs_A 167 HSPKGKRIGVLGLGQIGRALASRAEAFGM----SVRYW-NRSTLS-----GVDWIAHQSPVDLARDSDVLAVCVAASAAT 236 (340)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHTTTC----EEEEE-CSSCCT-----TSCCEECSSHHHHHHTCSEEEECC------
T ss_pred ccccCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-cCCccc-----ccCceecCCHHHHHhcCCEEEEeCCCCHHH
Confidence 34566899999999999999999999998 99999 998764 2345556788999999999999998 4556
Q ss_pred HHHH-HHhccccCCCCEEEEecCCCCH--HHHHHhhC
Q 024016 85 KDVA-MQIRPLLSRKKLLVSVAAGVKL--KDLQEWTG 118 (274)
Q Consensus 85 ~~v~-~~i~~~l~~~~~vis~~~g~~~--~~l~~~~~ 118 (274)
+.++ .+....++++.++|+++.|-.. +.+.+.+.
T Consensus 237 ~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~ 273 (340)
T 4dgs_A 237 QNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALK 273 (340)
T ss_dssp ----CHHHHHHTTTTCEEEECSCC-------------
T ss_pred HHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHH
Confidence 6666 4566678899999998765332 34544444
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.9e-11 Score=105.23 Aligned_cols=106 Identities=17% Similarity=0.247 Sum_probs=80.8
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCccc-H
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-V 84 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~-~ 84 (274)
.....++|||||+|+||+++++.|...|+ +|++| +|++++. ...+.|+.. .+..++++++|+|++++|... .
T Consensus 138 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~----~V~~~-d~~~~~~-~~~~~g~~~-~~l~ell~~aDvVvl~~P~~~~t 210 (313)
T 2ekl_A 138 LELAGKTIGIVGFGRIGTKVGIIANAMGM----KVLAY-DILDIRE-KAEKINAKA-VSLEELLKNSDVISLHVTVSKDA 210 (313)
T ss_dssp CCCTTCEEEEESCSHHHHHHHHHHHHTTC----EEEEE-CSSCCHH-HHHHTTCEE-CCHHHHHHHCSEEEECCCCCTTS
T ss_pred CCCCCCEEEEEeeCHHHHHHHHHHHHCCC----EEEEE-CCCcchh-HHHhcCcee-cCHHHHHhhCCEEEEeccCChHH
Confidence 34566899999999999999999999998 99999 9988764 345578765 377888999999999998533 4
Q ss_pred HHHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 85 KDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 85 ~~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
+.++ .+..+.++++.++|+++.| +..+.+.+.+.
T Consensus 211 ~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~ 247 (313)
T 2ekl_A 211 KPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIK 247 (313)
T ss_dssp CCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHH
T ss_pred HHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHH
Confidence 4444 3344567899999988765 33456666664
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.7e-11 Score=106.77 Aligned_cols=106 Identities=18% Similarity=0.182 Sum_probs=81.8
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcc-cHH
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVK 85 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~-~~~ 85 (274)
....++|||||+|+||+.++++|...|+ +|++| +|++++. .....|+....+..+++++||+|++++|.. ..+
T Consensus 165 ~l~g~tvGIIG~G~IG~~vA~~l~~~G~----~V~~~-d~~~~~~-~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~ 238 (347)
T 1mx3_A 165 RIRGETLGIIGLGRVGQAVALRAKAFGF----NVLFY-DPYLSDG-VERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNH 238 (347)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTTC----EEEEE-CTTSCTT-HHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCT
T ss_pred CCCCCEEEEEeECHHHHHHHHHHHHCCC----EEEEE-CCCcchh-hHhhcCCeecCCHHHHHhcCCEEEEcCCCCHHHH
Confidence 4566899999999999999999999998 99999 9886542 223467776667889999999999999864 455
Q ss_pred HHH-HHhccccCCCCEEEEecCCC--CHHHHHHhhC
Q 024016 86 DVA-MQIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (274)
Q Consensus 86 ~v~-~~i~~~l~~~~~vis~~~g~--~~~~l~~~~~ 118 (274)
.++ .+..+.++++.++|+++.|- ..+.+.+.+.
T Consensus 239 ~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~ 274 (347)
T 1mx3_A 239 HLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALK 274 (347)
T ss_dssp TSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred HHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHH
Confidence 555 44556788999999987653 3456666654
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.8e-11 Score=106.75 Aligned_cols=107 Identities=16% Similarity=0.191 Sum_probs=82.3
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCc-ccH
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVV 84 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~-~~~ 84 (274)
.....++|||||+|+||+++|+.+...|+ +|++| +|++. .+...+.|+....+..+++++||+|++++|. ...
T Consensus 156 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~----~V~~~-d~~~~-~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t 229 (352)
T 3gg9_A 156 RVLKGQTLGIFGYGKIGQLVAGYGRAFGM----NVLVW-GRENS-KERARADGFAVAESKDALFEQSDVLSVHLRLNDET 229 (352)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSHHH-HHHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTT
T ss_pred ccCCCCEEEEEeECHHHHHHHHHHHhCCC----EEEEE-CCCCC-HHHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHH
Confidence 34456899999999999999999999998 99999 99863 3455567888777889999999999999984 344
Q ss_pred HHHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 85 KDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 85 ~~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
+.++ .+..+.++++.++|+++.| +..+.+.+.+.
T Consensus 230 ~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~ 266 (352)
T 3gg9_A 230 RSIITVADLTRMKPTALFVNTSRAELVEENGMVTALN 266 (352)
T ss_dssp TTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHH
T ss_pred HHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHHH
Confidence 4444 3455668899999998754 33445555553
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.8e-11 Score=105.09 Aligned_cols=106 Identities=15% Similarity=0.194 Sum_probs=80.8
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCc-ccH
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVV 84 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~-~~~ 84 (274)
.....++|||||+|+||+.+|++|...|. +|.+| ||++...+... |+....+..+++++||+|++++|. ...
T Consensus 169 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~----~V~~~-dr~~~~~~~~~--g~~~~~~l~ell~~sDvV~l~~Plt~~T 241 (345)
T 4g2n_A 169 MGLTGRRLGIFGMGRIGRAIATRARGFGL----AIHYH-NRTRLSHALEE--GAIYHDTLDSLLGASDIFLIAAPGRPEL 241 (345)
T ss_dssp CCCTTCEEEEESCSHHHHHHHHHHHTTTC----EEEEE-CSSCCCHHHHT--TCEECSSHHHHHHTCSEEEECSCCCGGG
T ss_pred cccCCCEEEEEEeChhHHHHHHHHHHCCC----EEEEE-CCCCcchhhhc--CCeEeCCHHHHHhhCCEEEEecCCCHHH
Confidence 34456899999999999999999999998 99999 99865443322 777667889999999999999984 444
Q ss_pred HHHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 85 KDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 85 ~~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
+.++ .+....++++.++|+++-| +..+.+.+.+.
T Consensus 242 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~ 278 (345)
T 4g2n_A 242 KGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALR 278 (345)
T ss_dssp TTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred HHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHH
Confidence 4444 3455567899999988744 34556666664
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.1e-11 Score=104.63 Aligned_cols=106 Identities=21% Similarity=0.267 Sum_probs=80.9
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcc-cH
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VV 84 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~-~~ 84 (274)
.....++|||||+|+||.++++.|...|+ +|++| +|++++ +...+.|+... +..+++++||+|++++|.. ..
T Consensus 138 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~----~V~~~-d~~~~~-~~~~~~g~~~~-~l~ell~~aDvV~l~~p~~~~t 210 (307)
T 1wwk_A 138 IELEGKTIGIIGFGRIGYQVAKIANALGM----NILLY-DPYPNE-ERAKEVNGKFV-DLETLLKESDVVTIHVPLVEST 210 (307)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCH-HHHHHTTCEEC-CHHHHHHHCSEEEECCCCSTTT
T ss_pred cccCCceEEEEccCHHHHHHHHHHHHCCC----EEEEE-CCCCCh-hhHhhcCcccc-CHHHHHhhCCEEEEecCCChHH
Confidence 34556899999999999999999999998 99999 998876 44555787654 6788899999999999854 34
Q ss_pred HHHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 85 KDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 85 ~~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
+.++ .+..+.++++.++|+++.| +..+.+.+.+.
T Consensus 211 ~~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~ 247 (307)
T 1wwk_A 211 YHLINEERLKLMKKTAILINTSRGPVVDTNALVKALK 247 (307)
T ss_dssp TTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred hhhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHH
Confidence 4444 3445567899999988765 33445555553
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.5e-11 Score=106.70 Aligned_cols=105 Identities=19% Similarity=0.255 Sum_probs=80.3
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcc-cH
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VV 84 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~-~~ 84 (274)
.....++|||||+|+||+++++.|...|+ +|++| +|++++ +...+.|+... +..+++++||+|++|+|.. ..
T Consensus 142 ~~l~g~~vgIIG~G~iG~~vA~~l~~~G~----~V~~~-d~~~~~-~~~~~~g~~~~-~l~e~l~~aDiVil~vp~~~~t 214 (333)
T 2d0i_A 142 ESLYGKKVGILGMGAIGKAIARRLIPFGV----KLYYW-SRHRKV-NVEKELKARYM-DIDELLEKSDIVILALPLTRDT 214 (333)
T ss_dssp CCSTTCEEEEECCSHHHHHHHHHHGGGTC----EEEEE-CSSCCH-HHHHHHTEEEC-CHHHHHHHCSEEEECCCCCTTT
T ss_pred CCCCcCEEEEEccCHHHHHHHHHHHHCCC----EEEEE-CCCcch-hhhhhcCceec-CHHHHHhhCCEEEEcCCCChHH
Confidence 34567899999999999999999999998 99999 999876 44445677654 7778889999999999976 56
Q ss_pred HHHHH-HhccccCCCCEEEEecCCCC--HHHHHHhhC
Q 024016 85 KDVAM-QIRPLLSRKKLLVSVAAGVK--LKDLQEWTG 118 (274)
Q Consensus 85 ~~v~~-~i~~~l~~~~~vis~~~g~~--~~~l~~~~~ 118 (274)
+.++. ++.+.++++ ++|+++.|.. .+.+.+.+.
T Consensus 215 ~~~i~~~~~~~mk~g-ilin~srg~~vd~~aL~~aL~ 250 (333)
T 2d0i_A 215 YHIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAIK 250 (333)
T ss_dssp TTSBCHHHHHHTBTC-EEEECSCGGGBCHHHHHHHHH
T ss_pred HHHhCHHHHhhCCCC-EEEECCCCcccCHHHHHHHHH
Confidence 65553 345567889 9998876543 334555553
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.7e-11 Score=104.09 Aligned_cols=106 Identities=13% Similarity=0.134 Sum_probs=81.9
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcc-cH
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VV 84 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~-~~ 84 (274)
.....++|||||+|+||..+|+.+...|+ +|++| +|++++ +...+.|+.. .+..+++++||+|++++|.. ..
T Consensus 161 ~~l~g~tvgIIGlG~IG~~vA~~l~~~G~----~V~~~-d~~~~~-~~~~~~g~~~-~~l~ell~~aDvV~l~~P~t~~t 233 (335)
T 2g76_A 161 TELNGKTLGILGLGRIGREVATRMQSFGM----KTIGY-DPIISP-EVSASFGVQQ-LPLEEIWPLCDFITVHTPLLPST 233 (335)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHTTTC----EEEEE-CSSSCH-HHHHHTTCEE-CCHHHHGGGCSEEEECCCCCTTT
T ss_pred cCCCcCEEEEEeECHHHHHHHHHHHHCCC----EEEEE-CCCcch-hhhhhcCcee-CCHHHHHhcCCEEEEecCCCHHH
Confidence 34566899999999999999999999998 99999 998765 3445577765 47788999999999999854 45
Q ss_pred HHHH-HHhccccCCCCEEEEecCCC--CHHHHHHhhC
Q 024016 85 KDVA-MQIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (274)
Q Consensus 85 ~~v~-~~i~~~l~~~~~vis~~~g~--~~~~l~~~~~ 118 (274)
+.++ .+..+.++++.++|+++.|- ..+.+.+.+.
T Consensus 234 ~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~ 270 (335)
T 2g76_A 234 TGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQ 270 (335)
T ss_dssp TTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred HHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHH
Confidence 5555 34566788999999887653 3345665554
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.7e-11 Score=106.16 Aligned_cols=106 Identities=14% Similarity=0.234 Sum_probs=81.9
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCc-ccHH
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVVK 85 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~-~~~~ 85 (274)
....++|||||+|+||+++|+.|...|+ +|++| +|++.+.+.....|+... +..+++++||+|++++|. ....
T Consensus 142 ~l~g~tvGIIG~G~IG~~vA~~l~~~G~----~V~~~-d~~~~~~~~~~~~g~~~~-~l~ell~~aDvV~l~~P~t~~t~ 215 (330)
T 4e5n_A 142 GLDNATVGFLGMGAIGLAMADRLQGWGA----TLQYH-EAKALDTQTEQRLGLRQV-ACSELFASSDFILLALPLNADTL 215 (330)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHTTTSCC----EEEEE-CSSCCCHHHHHHHTEEEC-CHHHHHHHCSEEEECCCCSTTTT
T ss_pred ccCCCEEEEEeeCHHHHHHHHHHHHCCC----EEEEE-CCCCCcHhHHHhcCceeC-CHHHHHhhCCEEEEcCCCCHHHH
Confidence 4456899999999999999999999998 99999 998755555555677654 788899999999999984 3444
Q ss_pred HHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 86 DVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 86 ~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
.++ .+....++++.++|+++.| +..+.+.+.+.
T Consensus 216 ~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~ 251 (330)
T 4e5n_A 216 HLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALE 251 (330)
T ss_dssp TCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred HHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHH
Confidence 444 3566678899999988754 34456666554
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.4e-11 Score=102.98 Aligned_cols=89 Identities=17% Similarity=0.193 Sum_probs=72.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHH-cC--ceeccCchhhccCCCEEEEeeCcccH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFES-IG--VKVLSDNNAVVEYSDVVVFSVKPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~-g~~~~~~v~v~~~r~~~~~~~l~~-~g--~~~~~~~~~~~~~aDiIil~v~~~~~ 84 (274)
+.++|+|||+|.||.+++.+|.+. |+ .+|.+| ||++++.+.+.+ .+ +..++++.++++++|+|++|+|..
T Consensus 134 ~~~~igiIG~G~~g~~~a~~l~~~~g~---~~V~v~-dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~~-- 207 (312)
T 2i99_A 134 SSEVLCILGAGVQAYSHYEIFTEQFSF---KEVRIW-NRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLAT-- 207 (312)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHCCC---SEEEEE-CSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCCS--
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhCCC---cEEEEE-cCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCCC--
Confidence 457999999999999999999886 64 389999 999999998887 46 777788889999999999999852
Q ss_pred HHHHHHhccccCCCCEEEEec
Q 024016 85 KDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~ 105 (274)
.+++.. +.+++|++|+++.
T Consensus 208 ~~v~~~--~~l~~g~~vi~~g 226 (312)
T 2i99_A 208 EPILFG--EWVKPGAHINAVG 226 (312)
T ss_dssp SCCBCG--GGSCTTCEEEECC
T ss_pred CcccCH--HHcCCCcEEEeCC
Confidence 333322 4678899888763
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.4e-11 Score=104.63 Aligned_cols=101 Identities=14% Similarity=0.175 Sum_probs=78.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCc-ccHHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVVKD 86 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~-~~~~~ 86 (274)
...+||||||+|+||+++|+.|...|+ +|++| +|++++.+ .....++..+++++||+|++++|. ...+.
T Consensus 120 l~g~tvGIIGlG~IG~~vA~~l~~~G~----~V~~~-dr~~~~~~-----~~~~~~~l~ell~~aDiV~l~~P~t~~t~~ 189 (290)
T 3gvx_A 120 LYGKALGILGYGGIGRRVAHLAKAFGM----RVIAY-TRSSVDQN-----VDVISESPADLFRQSDFVLIAIPLTDKTRG 189 (290)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTC----EEEEE-CSSCCCTT-----CSEECSSHHHHHHHCSEEEECCCCCTTTTT
T ss_pred eecchheeeccCchhHHHHHHHHhhCc----EEEEE-eccccccc-----cccccCChHHHhhccCeEEEEeeccccchh
Confidence 456899999999999999999999999 99999 99876543 244556888999999999999984 45555
Q ss_pred HH-HHhccccCCCCEEEEecCCC--CHHHHHHhhC
Q 024016 87 VA-MQIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (274)
Q Consensus 87 v~-~~i~~~l~~~~~vis~~~g~--~~~~l~~~~~ 118 (274)
++ .+..+.++++.++|+++.|- ..+.+.+.+.
T Consensus 190 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~ 224 (290)
T 3gvx_A 190 MVNSRLLANARKNLTIVNVARADVVSKPDMIGFLK 224 (290)
T ss_dssp CBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred hhhHHHHhhhhcCceEEEeehhcccCCcchhhhhh
Confidence 54 45566789999999987543 3455655553
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=6.1e-11 Score=99.62 Aligned_cols=118 Identities=11% Similarity=0.115 Sum_probs=83.1
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCcccHH-
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVK- 85 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~~~~- 85 (274)
.+. +|+|||+|.||.+++..|.+.|+ +|++| +|++++++.+.+ .|.. ..+..++ +++|+||+|+|+....
T Consensus 115 l~~-~v~iiG~G~~g~~~a~~l~~~g~----~v~v~-~r~~~~~~~l~~~~~~~-~~~~~~~-~~~Divi~~tp~~~~~~ 186 (263)
T 2d5c_A 115 LKG-PALVLGAGGAGRAVAFALREAGL----EVWVW-NRTPQRALALAEEFGLR-AVPLEKA-REARLLVNATRVGLEDP 186 (263)
T ss_dssp CCS-CEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSHHHHHHHHHHHTCE-ECCGGGG-GGCSEEEECSSTTTTCT
T ss_pred CCC-eEEEECCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHHhccc-hhhHhhc-cCCCEEEEccCCCCCCC
Confidence 345 89999999999999999999998 89999 999998888776 5655 4566777 8999999999977432
Q ss_pred --HHHHHhccccCCCCEEEEecCCCCHHHHHHhhCCCceEEEcCCcHHhhcCC
Q 024016 86 --DVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNTPSAVGEA 136 (274)
Q Consensus 86 --~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~~~~~~~~~p~~~~~~~~g 136 (274)
.++. .+.++++++++++..+.....+.+.... ...+++++.+..++++
T Consensus 187 ~~~~l~--~~~l~~g~~viD~~~~p~~t~l~~~a~~-~g~~~v~g~~mlv~q~ 236 (263)
T 2d5c_A 187 SASPLP--AELFPEEGAAVDLVYRPLWTRFLREAKA-KGLKVQTGLPMLAWQG 236 (263)
T ss_dssp TCCSSC--GGGSCSSSEEEESCCSSSSCHHHHHHHH-TTCEEECSHHHHHHHH
T ss_pred CCCCCC--HHHcCCCCEEEEeecCCcccHHHHHHHH-CcCEEECcHHHHHHHH
Confidence 2221 3457789999987543211123333321 2235667776655544
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.9e-10 Score=98.92 Aligned_cols=95 Identities=22% Similarity=0.311 Sum_probs=72.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c---------Ccee-ccCchhhccCCCEEEEee
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I---------GVKV-LSDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~---------g~~~-~~~~~~~~~~aDiIil~v 79 (274)
|||+|||+|.||.+++..|.++|. ..+|++| ||++++++.+.. . .+.+ .++. +.+++||+||+|+
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~g~--~~~V~l~-d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav 77 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQGV--ADDYVFI-DANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTL 77 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTC--CSEEEEE-CSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC--CCEEEEE-cCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEec
Confidence 699999999999999999999992 1289999 999988766553 1 2344 3455 7788999999999
Q ss_pred Cccc--------------------HHHHHHHhccccCCCCEEEEecCCCCH
Q 024016 80 KPQV--------------------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (274)
Q Consensus 80 ~~~~--------------------~~~v~~~i~~~l~~~~~vis~~~g~~~ 110 (274)
++.. ++++++.+.++. ++.+++..++++..
T Consensus 78 ~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~~~ 127 (309)
T 1hyh_A 78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVISNPVDV 127 (309)
T ss_dssp SCGGGTC-------CTTHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHH
T ss_pred CCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCcHHH
Confidence 8644 467777777654 66777778787654
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-10 Score=100.73 Aligned_cols=106 Identities=16% Similarity=0.190 Sum_probs=79.9
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCc-ccH
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVV 84 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~-~~~ 84 (274)
.....++|||||+|+||+.+|+.+..-|+ +|.+| +|++ +.+...+.|+.. .+..+++++||+|++++|. ...
T Consensus 172 ~~l~gktvGIIGlG~IG~~vA~~l~~fG~----~V~~~-d~~~-~~~~~~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T 244 (365)
T 4hy3_A 172 RLIAGSEIGIVGFGDLGKALRRVLSGFRA----RIRVF-DPWL-PRSMLEENGVEP-ASLEDVLTKSDFIFVVAAVTSEN 244 (365)
T ss_dssp CCSSSSEEEEECCSHHHHHHHHHHTTSCC----EEEEE-CSSS-CHHHHHHTTCEE-CCHHHHHHSCSEEEECSCSSCC-
T ss_pred cccCCCEEEEecCCcccHHHHHhhhhCCC----EEEEE-CCCC-CHHHHhhcCeee-CCHHHHHhcCCEEEEcCcCCHHH
Confidence 34456899999999999999999999998 99999 9985 334445577765 4788999999999999984 455
Q ss_pred HHHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 85 KDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 85 ~~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
+.++ .+....++++.++|+++-| +..+.+.+.+.
T Consensus 245 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~ 281 (365)
T 4hy3_A 245 KRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVS 281 (365)
T ss_dssp --CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHH
T ss_pred HhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHH
Confidence 5555 4456678999999998744 34556666664
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=99.12 E-value=6.1e-10 Score=83.82 Aligned_cols=96 Identities=15% Similarity=0.190 Sum_probs=69.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceec-cC---ch----hhccCCCEEEEee
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVL-SD---NN----AVVEYSDVVVFSV 79 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~-~~---~~----~~~~~aDiIil~v 79 (274)
+.|+|.|+|+|.+|..+++.|.+.|+ +|+++ +|++++.+.+.+ .++... .+ .. ..++++|+||+|+
T Consensus 3 ~~m~i~IiG~G~iG~~~a~~L~~~g~----~v~~~-d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~ 77 (140)
T 1lss_A 3 HGMYIIIAGIGRVGYTLAKSLSEKGH----DIVLI-DIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT 77 (140)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC----eEEEE-ECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEee
Confidence 35799999999999999999999998 99999 999998888775 465432 22 11 1256899999999
Q ss_pred CcccHHHHHHHhccccCCCCEEEEecCCCCH
Q 024016 80 KPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (274)
Q Consensus 80 ~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~ 110 (274)
|++.....+..+...+.++++++. +++...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~ii~~-~~~~~~ 107 (140)
T 1lss_A 78 GKEEVNLMSSLLAKSYGINKTIAR-ISEIEY 107 (140)
T ss_dssp SCHHHHHHHHHHHHHTTCCCEEEE-CSSTTH
T ss_pred CCchHHHHHHHHHHHcCCCEEEEE-ecCHhH
Confidence 887665555555555666666554 444443
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.5e-11 Score=101.23 Aligned_cols=136 Identities=14% Similarity=0.132 Sum_probs=93.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCcccHHHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v 87 (274)
.. +|+|||+|.||.+++..|.+.|. .+|+++ +|++++++.+.+ .+.....+..+.++++|+||.|||.....+.
T Consensus 108 ~~-~vliiGaGg~a~ai~~~L~~~G~---~~I~v~-nR~~~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm~p~~ 182 (253)
T 3u62_A 108 KE-PVVVVGAGGAARAVIYALLQMGV---KDIWVV-NRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMKGEE 182 (253)
T ss_dssp CS-SEEEECCSHHHHHHHHHHHHTTC---CCEEEE-ESCHHHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTTTSCC
T ss_pred CC-eEEEECcHHHHHHHHHHHHHcCC---CEEEEE-eCCHHHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCCCCCC
Confidence 45 89999999999999999999986 379999 999999888765 3333445566778899999999974321110
Q ss_pred HHHh-ccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEecCCCCCHHHHHH
Q 024016 88 AMQI-RPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGEL 153 (274)
Q Consensus 88 ~~~i-~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~ 153 (274)
..+ ...++++++|+++..+ +...+++... +.+ +.+|+.+..+.+|...+......+++.+++
T Consensus 183 -~~i~~~~l~~~~~V~Divy~-~T~ll~~A~~~G~~--~~~~Gl~MLv~Qa~~af~~wtg~~~~~~~~ 246 (253)
T 3u62_A 183 -LPVSDDSLKNLSLVYDVIYF-DTPLVVKARKLGVK--HIIKGNLMFYYQAMENLKIWGIYDEEVFKE 246 (253)
T ss_dssp -CSCCHHHHTTCSEEEECSSS-CCHHHHHHHHHTCS--EEECTHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred -CCCCHHHhCcCCEEEEeeCC-CcHHHHHHHHCCCc--EEECCHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 011 1235688999999877 6666654443 322 478999988888765433222235555433
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.10 E-value=4.1e-10 Score=96.09 Aligned_cols=116 Identities=15% Similarity=0.252 Sum_probs=82.8
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec--cCchhhccCCCEEEEeeCcccH
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL--SDNNAVVEYSDVVVFSVKPQVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~--~~~~~~~~~aDiIil~v~~~~~ 84 (274)
....++|+|||+|+||..+++.|...|. +|++| +|++++.+.+.+.|+... .+..++++++|+|++++|...+
T Consensus 152 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~----~V~~~-dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~~~i 226 (293)
T 3d4o_A 152 TIHGANVAVLGLGRVGMSVARKFAALGA----KVKVG-ARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPALVV 226 (293)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEECCSSCCB
T ss_pred CCCCCEEEEEeeCHHHHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHHCCCeecChhhHHHHhcCCCEEEECCChHHh
Confidence 4456899999999999999999999998 99999 999988777766777643 4566778999999999997654
Q ss_pred HHHHHHhccccCCCCEEEEecCC---CCHHHHHHhhCCCceEEEcCCcHHhh
Q 024016 85 KDVAMQIRPLLSRKKLLVSVAAG---VKLKDLQEWTGHSRFIRVMPNTPSAV 133 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~~g---~~~~~l~~~~~~~~~~~~~p~~~~~~ 133 (274)
.+ +....++++.++|++..+ +..+ ..+.. +. .+..+|+.|..+
T Consensus 227 ~~---~~l~~mk~~~~lin~ar~~~~~~~~-~a~~~-Gv-~~~~~~~l~~~v 272 (293)
T 3d4o_A 227 TA---NVLAEMPSHTFVIDLASKPGGTDFR-YAEKR-GI-KALLVPGLPGIV 272 (293)
T ss_dssp CH---HHHHHSCTTCEEEECSSTTCSBCHH-HHHHH-TC-EEEECCCHHHHH
T ss_pred CH---HHHHhcCCCCEEEEecCCCCCCCHH-HHHHC-CC-EEEECCCCCccc
Confidence 22 122346788999988742 2231 11112 22 233567777654
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.10 E-value=4.5e-10 Score=96.15 Aligned_cols=94 Identities=13% Similarity=0.243 Sum_probs=75.1
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee--ccCchhhccCCCEEEEeeCccc
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV--LSDNNAVVEYSDVVVFSVKPQV 83 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~--~~~~~~~~~~aDiIil~v~~~~ 83 (274)
.....++|+|||+|+||..+++.|...|. +|++| +|++++.+.+.+.|+.. ..+..++++++|+|++++|+..
T Consensus 153 ~~l~g~~v~IiG~G~iG~~~a~~l~~~G~----~V~~~-d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~~~ 227 (300)
T 2rir_A 153 YTIHGSQVAVLGLGRTGMTIARTFAALGA----NVKVG-ARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPSMI 227 (300)
T ss_dssp SCSTTSEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSSCC
T ss_pred CCCCCCEEEEEcccHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCChhh
Confidence 34456899999999999999999999998 99999 99998877776677654 2466778899999999999865
Q ss_pred HHHHHHHhccccCCCCEEEEecCC
Q 024016 84 VKDVAMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~~~g 107 (274)
+.+ +....++++.++|++..+
T Consensus 228 i~~---~~~~~mk~g~~lin~a~g 248 (300)
T 2rir_A 228 LNQ---TVLSSMTPKTLILDLASR 248 (300)
T ss_dssp BCH---HHHTTSCTTCEEEECSST
T ss_pred hCH---HHHHhCCCCCEEEEEeCC
Confidence 432 223457889999988654
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=5.2e-11 Score=101.89 Aligned_cols=101 Identities=11% Similarity=0.141 Sum_probs=77.9
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcc-cHH
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVK 85 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~-~~~ 85 (274)
....++|||||+|+||+++|++|...|+ +|++| +|+++ +. +.....+..+++++||+|++++|.. ..+
T Consensus 121 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~----~V~~~-dr~~~--~~----~~~~~~~l~ell~~aDvV~l~~P~~~~t~ 189 (303)
T 1qp8_A 121 LIQGEKVAVLGLGEIGTRVGKILAALGA----QVRGF-SRTPK--EG----PWRFTNSLEEALREARAAVCALPLNKHTR 189 (303)
T ss_dssp CCTTCEEEEESCSTHHHHHHHHHHHTTC----EEEEE-CSSCC--CS----SSCCBSCSHHHHTTCSEEEECCCCSTTTT
T ss_pred CCCCCEEEEEccCHHHHHHHHHHHHCCC----EEEEE-CCCcc--cc----CcccCCCHHHHHhhCCEEEEeCcCchHHH
Confidence 3456899999999999999999999998 99999 99876 11 3434457888999999999999865 456
Q ss_pred HHHH-HhccccCCCCEEEEecCCC--CHHHHHHhhC
Q 024016 86 DVAM-QIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (274)
Q Consensus 86 ~v~~-~i~~~l~~~~~vis~~~g~--~~~~l~~~~~ 118 (274)
.++. +..+.++++.++|+++.|- ..+.+.+.+.
T Consensus 190 ~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~ 225 (303)
T 1qp8_A 190 GLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILK 225 (303)
T ss_dssp TCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred HHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHH
Confidence 6653 5666789999999887652 3345655554
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.2e-10 Score=100.94 Aligned_cols=104 Identities=13% Similarity=0.179 Sum_probs=77.7
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcc-cHH
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVK 85 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~-~~~ 85 (274)
....++|||||+|+||..+++.+...|+ +|++| +|++++. +.+ .+....+..+++++||+|++++|.. ..+
T Consensus 143 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~----~V~~~-d~~~~~~--~~~-~~~~~~~l~ell~~aDvV~l~~p~~~~t~ 214 (333)
T 1j4a_A 143 EVRDQVVGVVGTGHIGQVFMQIMEGFGA----KVITY-DIFRNPE--LEK-KGYYVDSLDDLYKQADVISLHVPDVPANV 214 (333)
T ss_dssp CGGGSEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCHH--HHH-TTCBCSCHHHHHHHCSEEEECSCCCGGGT
T ss_pred cCCCCEEEEEccCHHHHHHHHHHHHCCC----EEEEE-CCCcchh--HHh-hCeecCCHHHHHhhCCEEEEcCCCcHHHH
Confidence 3456899999999999999999999998 99999 9987654 222 2444447788899999999999843 355
Q ss_pred HHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 86 DVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 86 ~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
.++ .+....++++.++|+++.| +..+.+.+.+.
T Consensus 215 ~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~ 250 (333)
T 1j4a_A 215 HMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLD 250 (333)
T ss_dssp TCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred HHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHH
Confidence 444 2344567899999988654 34456666664
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.08 E-value=4.4e-11 Score=103.13 Aligned_cols=106 Identities=12% Similarity=0.210 Sum_probs=78.8
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCc-ccH
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVV 84 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~-~~~ 84 (274)
.....++|||||+|+||+.+|+.|...|+ +|++| +|+++..+.+.. .....+..+++++||+|++++|. ...
T Consensus 133 ~~l~gktvGIiGlG~IG~~vA~~l~~~G~----~V~~~-dr~~~~~~~~~~--~~~~~~l~ell~~aDvV~l~lPlt~~t 205 (324)
T 3evt_A 133 STLTGQQLLIYGTGQIGQSLAAKASALGM----HVIGV-NTTGHPADHFHE--TVAFTATADALATANFIVNALPLTPTT 205 (324)
T ss_dssp CCSTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESSCCCCTTCSE--EEEGGGCHHHHHHCSEEEECCCCCGGG
T ss_pred ccccCCeEEEECcCHHHHHHHHHHHhCCC----EEEEE-CCCcchhHhHhh--ccccCCHHHHHhhCCEEEEcCCCchHH
Confidence 34556899999999999999999999999 99999 998765432211 12345778899999999999984 445
Q ss_pred HHHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 85 KDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 85 ~~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
+.++ .+....++++.++|+++-| +..+.+.+.+.
T Consensus 206 ~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~ 242 (324)
T 3evt_A 206 HHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALD 242 (324)
T ss_dssp TTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHH
T ss_pred HHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHH
Confidence 5544 3455668899999988744 34556666554
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.07 E-value=5.8e-11 Score=102.04 Aligned_cols=101 Identities=18% Similarity=0.255 Sum_probs=77.6
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcc-cH
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VV 84 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~-~~ 84 (274)
.....++|||||+|+||..++++|...|+ +|++| +|++++.+ +. ..+..+++++||+|++++|.. ..
T Consensus 140 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~----~V~~~-d~~~~~~~------~~-~~~l~ell~~aDvV~l~~p~~~~t 207 (311)
T 2cuk_A 140 LDLQGLTLGLVGMGRIGQAVAKRALAFGM----RVVYH-ARTPKPLP------YP-FLSLEELLKEADVVSLHTPLTPET 207 (311)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCSSS------SC-BCCHHHHHHHCSEEEECCCCCTTT
T ss_pred cCCCCCEEEEEEECHHHHHHHHHHHHCCC----EEEEE-CCCCcccc------cc-cCCHHHHHhhCCEEEEeCCCChHH
Confidence 34566899999999999999999999998 99999 99876543 22 356778899999999999865 45
Q ss_pred HHHHH-HhccccCCCCEEEEecCCC--CHHHHHHhhC
Q 024016 85 KDVAM-QIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (274)
Q Consensus 85 ~~v~~-~i~~~l~~~~~vis~~~g~--~~~~l~~~~~ 118 (274)
+.++. +....++++.++|+++.|- ..+.+.+.+.
T Consensus 208 ~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~ 244 (311)
T 2cuk_A 208 HRLLNRERLFAMKRGAILLNTARGALVDTEALVEALR 244 (311)
T ss_dssp TTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHT
T ss_pred HhhcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHh
Confidence 55553 4556688999999887653 3345666565
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.06 E-value=7.6e-11 Score=89.83 Aligned_cols=88 Identities=17% Similarity=0.298 Sum_probs=68.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCce--eccCchhhccCCCEEEEeeCcccHHH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVK--VLSDNNAVVEYSDVVVFSVKPQVVKD 86 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~--~~~~~~~~~~~aDiIil~v~~~~~~~ 86 (274)
.+||+|||+|.||..++..|.+.|+ +|++| +|++++.+.+.+ .+.. ..++..+.++++|+||.|+|....
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~g~----~v~v~-~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~~~-- 93 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYPQY----KVTVA-GRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSKTP-- 93 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTTTC----EEEEE-ESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCSSC--
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-cCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCCCc--
Confidence 4699999999999999999999888 79999 999999888765 5654 345667788899999999986521
Q ss_pred HHHHhccccCCCCEEEEecC
Q 024016 87 VAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~~ 106 (274)
++. ...++++.+++++..
T Consensus 94 ~~~--~~~l~~g~~vid~~~ 111 (144)
T 3oj0_A 94 IVE--ERSLMPGKLFIDLGN 111 (144)
T ss_dssp SBC--GGGCCTTCEEEECCS
T ss_pred Eee--HHHcCCCCEEEEccC
Confidence 111 134677888887644
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=99.06 E-value=5.5e-11 Score=102.41 Aligned_cols=106 Identities=18% Similarity=0.187 Sum_probs=78.1
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCc-ccH
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVV 84 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~-~~~ 84 (274)
.....++|||||+|+||+++|+.|...|+ +|++| +|+++..+.+ .+.....+..+++++||+|++++|. ...
T Consensus 136 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~----~V~~~-dr~~~~~~~~--~~~~~~~~l~ell~~aDvV~l~lPlt~~T 208 (324)
T 3hg7_A 136 QGLKGRTLLILGTGSIGQHIAHTGKHFGM----KVLGV-SRSGRERAGF--DQVYQLPALNKMLAQADVIVSVLPATRET 208 (324)
T ss_dssp CCSTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCCCTTC--SEEECGGGHHHHHHTCSEEEECCCCCSSS
T ss_pred cccccceEEEEEECHHHHHHHHHHHhCCC----EEEEE-cCChHHhhhh--hcccccCCHHHHHhhCCEEEEeCCCCHHH
Confidence 34456899999999999999999999999 99999 9987433221 1122345778899999999999984 445
Q ss_pred HHHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 85 KDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 85 ~~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
+.++ .+....++++.++|+++.| +..+.+.+.+.
T Consensus 209 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~ 245 (324)
T 3hg7_A 209 HHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALR 245 (324)
T ss_dssp TTSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred HHHhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHH
Confidence 5554 3455668899999998754 33456665554
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=99.06 E-value=2.8e-11 Score=104.02 Aligned_cols=106 Identities=18% Similarity=0.222 Sum_probs=78.2
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccH
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~ 84 (274)
.....++|||||+|+||+.+|+.|...|+ +|++| +|+++..+.+... ....+..+++++||+|++++| ....
T Consensus 135 ~~l~g~tvGIiG~G~IG~~vA~~l~~~G~----~V~~~-dr~~~~~~~~~~~--~~~~~l~ell~~aDiV~l~~Plt~~t 207 (315)
T 3pp8_A 135 YTREEFSVGIMGAGVLGAKVAESLQAWGF----PLRCW-SRSRKSWPGVESY--VGREELRAFLNQTRVLINLLPNTAQT 207 (315)
T ss_dssp CCSTTCCEEEECCSHHHHHHHHHHHTTTC----CEEEE-ESSCCCCTTCEEE--ESHHHHHHHHHTCSEEEECCCCCGGG
T ss_pred CCcCCCEEEEEeeCHHHHHHHHHHHHCCC----EEEEE-cCCchhhhhhhhh--cccCCHHHHHhhCCEEEEecCCchhh
Confidence 34456899999999999999999999998 99999 9987643221110 112467888999999999998 4456
Q ss_pred HHHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 85 KDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 85 ~~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
+.++ .+....++++.++|+++.| +..+.+.+.+.
T Consensus 208 ~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~ 244 (315)
T 3pp8_A 208 VGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALD 244 (315)
T ss_dssp TTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred hhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHH
Confidence 5555 4556678899999988754 34456666554
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=99.06 E-value=3.3e-10 Score=85.65 Aligned_cols=96 Identities=23% Similarity=0.317 Sum_probs=73.2
Q ss_pred CCCeEEEEcc----cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccH
Q 024016 9 ESFILGFIGA----GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG~----G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~ 84 (274)
+..+|+|||+ |+||..++++|.+.|| +|+.+ |++.+.. .|+.++.+..++.+.+|++++++|++.+
T Consensus 13 ~p~~IavIGaS~~~g~~G~~~~~~L~~~G~----~V~~v-np~~~~i-----~G~~~~~s~~el~~~vDlvii~vp~~~v 82 (138)
T 1y81_A 13 EFRKIALVGASKNPAKYGNIILKDLLSKGF----EVLPV-NPNYDEI-----EGLKCYRSVRELPKDVDVIVFVVPPKVG 82 (138)
T ss_dssp -CCEEEEETCCSCTTSHHHHHHHHHHHTTC----EEEEE-CTTCSEE-----TTEECBSSGGGSCTTCCEEEECSCHHHH
T ss_pred CCCeEEEEeecCCCCCHHHHHHHHHHHCCC----EEEEe-CCCCCeE-----CCeeecCCHHHhCCCCCEEEEEeCHHHH
Confidence 3468999999 9999999999999999 87777 7664322 5888888999988899999999999999
Q ss_pred HHHHHHhccccCCCCEEEEecCCCCHHHHHHhh
Q 024016 85 KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWT 117 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~ 117 (274)
.+++.++.. ...+.+++. +++.. +++.+..
T Consensus 83 ~~v~~~~~~-~g~~~i~~~-~~~~~-~~l~~~a 112 (138)
T 1y81_A 83 LQVAKEAVE-AGFKKLWFQ-PGAES-EEIRRFL 112 (138)
T ss_dssp HHHHHHHHH-TTCCEEEEC-TTSCC-HHHHHHH
T ss_pred HHHHHHHHH-cCCCEEEEc-CccHH-HHHHHHH
Confidence 999988765 344555553 34443 4444433
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.1e-09 Score=94.11 Aligned_cols=89 Identities=12% Similarity=0.175 Sum_probs=68.8
Q ss_pred CCCCCCeEEEEcccHHHHH-HHHHHHhC-CCCCCCcEE-EEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCc
Q 024016 6 IPAESFILGFIGAGKMAES-IAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKP 81 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~-~a~~L~~~-g~~~~~~v~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~ 81 (274)
+.|+++||||||+|+||.. ++..|.+. ++ ++. ++ +|++++++.+.+ .|+..+++..++++++|+|++|+|+
T Consensus 2 ~~M~~~~igiIG~G~~g~~~~~~~l~~~~~~----~l~av~-d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp~ 76 (308)
T 3uuw_A 2 NAMKNIKMGMIGLGSIAQKAYLPILTKSERF----EFVGAF-TPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSST 76 (308)
T ss_dssp ---CCCEEEEECCSHHHHHHTHHHHTSCSSS----EEEEEE-CSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCCG
T ss_pred CccccCcEEEEecCHHHHHHHHHHHHhCCCe----EEEEEE-CCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCCc
Confidence 3567789999999999996 88888763 44 666 67 999999988876 6876678888988899999999999
Q ss_pred ccHHHHHHHhccccCCCCEEE
Q 024016 82 QVVKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 82 ~~~~~v~~~i~~~l~~~~~vi 102 (274)
....+++.... ..|+-|+
T Consensus 77 ~~h~~~~~~al---~~gk~vl 94 (308)
T 3uuw_A 77 ETHYEIIKILL---NLGVHVY 94 (308)
T ss_dssp GGHHHHHHHHH---HTTCEEE
T ss_pred HhHHHHHHHHH---HCCCcEE
Confidence 98777766543 3444444
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=3e-10 Score=100.77 Aligned_cols=104 Identities=18% Similarity=0.223 Sum_probs=79.1
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcc-cH
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VV 84 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~-~~ 84 (274)
.....++|||||+|+||+.+|+++...|+ +|++| ||+++.. ..++....+..+++++||+|++++|.. ..
T Consensus 141 ~el~gktlGiIGlG~IG~~vA~~l~~~G~----~V~~~-d~~~~~~----~~~~~~~~~l~ell~~aDvV~l~~P~t~~t 211 (404)
T 1sc6_A 141 FEARGKKLGIIGYGHIGTQLGILAESLGM----YVYFY-DIENKLP----LGNATQVQHLSDLLNMSDVVSLHVPENPST 211 (404)
T ss_dssp CCSTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCCC----CTTCEECSCHHHHHHHCSEEEECCCSSTTT
T ss_pred cccCCCEEEEEeECHHHHHHHHHHHHCCC----EEEEE-cCCchhc----cCCceecCCHHHHHhcCCEEEEccCCChHH
Confidence 44567899999999999999999999998 99999 9976431 123555567889999999999999854 45
Q ss_pred HHHH-HHhccccCCCCEEEEecCCC--CHHHHHHhhC
Q 024016 85 KDVA-MQIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (274)
Q Consensus 85 ~~v~-~~i~~~l~~~~~vis~~~g~--~~~~l~~~~~ 118 (274)
+.++ .+....+++|.++|+++.|- ..+.+.+.+.
T Consensus 212 ~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~ 248 (404)
T 1sc6_A 212 KNMMGAKEISLMKPGSLLINASRGTVVDIPALADALA 248 (404)
T ss_dssp TTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHH
T ss_pred HHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHH
Confidence 5555 33555688999999887553 3456666664
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1e-09 Score=84.64 Aligned_cols=101 Identities=12% Similarity=0.087 Sum_probs=71.3
Q ss_pred CCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH-HcCceec-cC---c---hhh-ccCCCE
Q 024016 4 FPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE-SIGVKVL-SD---N---NAV-VEYSDV 74 (274)
Q Consensus 4 ~~~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~-~~g~~~~-~~---~---~~~-~~~aDi 74 (274)
||.....++|.|+|+|.+|..+++.|.+.|+ +|+++ +|++++.+.+. +.|.... .+ . .+. +.++|+
T Consensus 13 ~~~~~~~~~v~IiG~G~iG~~la~~L~~~g~----~V~vi-d~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~ 87 (155)
T 2g1u_A 13 MSKKQKSKYIVIFGCGRLGSLIANLASSSGH----SVVVV-DKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADM 87 (155)
T ss_dssp ----CCCCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSE
T ss_pred hhcccCCCcEEEECCCHHHHHHHHHHHhCCC----eEEEE-ECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCE
Confidence 5666667899999999999999999999998 99999 99999888776 5665432 22 1 112 567999
Q ss_pred EEEeeCcccHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 75 VVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 75 Iil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
||+|++++.....+..+...+.+...++...++..
T Consensus 88 Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~ 122 (155)
T 2g1u_A 88 VFAFTNDDSTNFFISMNARYMFNVENVIARVYDPE 122 (155)
T ss_dssp EEECSSCHHHHHHHHHHHHHTSCCSEEEEECSSGG
T ss_pred EEEEeCCcHHHHHHHHHHHHHCCCCeEEEEECCHH
Confidence 99999987665555444444445556666655544
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=99.02 E-value=2e-09 Score=92.80 Aligned_cols=113 Identities=17% Similarity=0.296 Sum_probs=77.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH--HHH-Hc------Cceec-cCchhhccCCCEEEEe
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD--AFE-SI------GVKVL-SDNNAVVEYSDVVVFS 78 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~--~l~-~~------g~~~~-~~~~~~~~~aDiIil~ 78 (274)
++|||+|||+|.||.+++..|..+|+. .+|+++ +|++++++ .+. .. ...+. .+..+.++++|+||++
T Consensus 6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~--~~V~l~-d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~aD~Vii~ 82 (319)
T 1lld_A 6 KPTKLAVIGAGAVGSTLAFAAAQRGIA--REIVLE-DIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVIT 82 (319)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCC--SEEEEE-CSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCC--CEEEEE-eCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHHHhCCCCEEEEC
Confidence 357999999999999999999999863 379999 99987765 221 12 22222 2234567899999999
Q ss_pred eCccc----------------HHHHHHHhccccCCCCEEEEecCCCCHH-HHHH---hhCCCceEEE
Q 024016 79 VKPQV----------------VKDVAMQIRPLLSRKKLLVSVAAGVKLK-DLQE---WTGHSRFIRV 125 (274)
Q Consensus 79 v~~~~----------------~~~v~~~i~~~l~~~~~vis~~~g~~~~-~l~~---~~~~~~~~~~ 125 (274)
++... +++++..+.++ .++.+|++.++|+... .+.. .+|..+++..
T Consensus 83 v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~~Np~~~~~~~~~~~~~~~~~~vig~ 148 (319)
T 1lld_A 83 AGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPVDIATHVAQKLTGLPENQIFGS 148 (319)
T ss_dssp CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHHHHHHHHHHHTCCTTSEEEC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecCchHHHHHHHHHhcCCCHHHEeec
Confidence 95322 33677777764 6888999999988754 3333 3444466654
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.1e-10 Score=99.58 Aligned_cols=103 Identities=15% Similarity=0.207 Sum_probs=76.4
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCc-ccHH
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVVK 85 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~-~~~~ 85 (274)
....++|||||+|+||+.+|+.+...|. +|++| +|+++.. .+.++... +..+++++||+|++++|. ...+
T Consensus 145 ~l~gktvgIiGlG~IG~~vA~~l~~~G~----~V~~~-d~~~~~~---~~~~~~~~-~l~ell~~aDvV~l~~Plt~~t~ 215 (343)
T 2yq5_A 145 EIYNLTVGLIGVGHIGSAVAEIFSAMGA----KVIAY-DVAYNPE---FEPFLTYT-DFDTVLKEADIVSLHTPLFPSTE 215 (343)
T ss_dssp CGGGSEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCGG---GTTTCEEC-CHHHHHHHCSEEEECCCCCTTTT
T ss_pred ccCCCeEEEEecCHHHHHHHHHHhhCCC----EEEEE-CCChhhh---hhcccccc-CHHHHHhcCCEEEEcCCCCHHHH
Confidence 3456899999999999999999999998 99999 9987541 12344443 788999999999999984 3344
Q ss_pred HHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 86 DVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 86 ~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
.++ .+....++++.++|+++-| +..+.+.+.+.
T Consensus 216 ~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~ 251 (343)
T 2yq5_A 216 NMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQ 251 (343)
T ss_dssp TCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred HHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHH
Confidence 433 3445567899999988744 34456665554
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.4e-09 Score=84.76 Aligned_cols=95 Identities=12% Similarity=0.119 Sum_probs=68.2
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHHcCceec-cC---c---hhh--ccCCCEEE
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESIGVKVL-SD---N---NAV--VEYSDVVV 76 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~-g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~-~~---~---~~~--~~~aDiIi 76 (274)
.+..++|.|+|+|.||..+++.|.+. |+ +|+++ ++++++.+.+.+.|+.+. .+ . .++ ++++|+||
T Consensus 36 ~~~~~~v~IiG~G~~G~~~a~~L~~~~g~----~V~vi-d~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi 110 (183)
T 3c85_A 36 NPGHAQVLILGMGRIGTGAYDELRARYGK----ISLGI-EIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVL 110 (183)
T ss_dssp CCTTCSEEEECCSHHHHHHHHHHHHHHCS----CEEEE-ESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEE
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhccCC----eEEEE-ECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEE
Confidence 34457999999999999999999999 99 99999 999999988887776532 12 1 233 56899999
Q ss_pred EeeCcccH-HHHHHHhccccCCCCEEEEecCC
Q 024016 77 FSVKPQVV-KDVAMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 77 l~v~~~~~-~~v~~~i~~~l~~~~~vis~~~g 107 (274)
+|++++.. ..++..+. .+.++..++....+
T Consensus 111 ~~~~~~~~~~~~~~~~~-~~~~~~~ii~~~~~ 141 (183)
T 3c85_A 111 LAMPHHQGNQTALEQLQ-RRNYKGQIAAIAEY 141 (183)
T ss_dssp ECCSSHHHHHHHHHHHH-HTTCCSEEEEEESS
T ss_pred EeCCChHHHHHHHHHHH-HHCCCCEEEEEECC
Confidence 99986543 33333333 34455556654443
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.00 E-value=5.7e-10 Score=85.10 Aligned_cols=95 Identities=15% Similarity=0.162 Sum_probs=73.3
Q ss_pred CCeEEEEcc----cHHHHHHHHHHHhCCCCCCCcEEEEeCCCH--HHHHHHHHcCceeccCchhhccCCCEEEEeeCccc
Q 024016 10 SFILGFIGA----GKMAESIAKGVAKSGVLPPDRICTAVHSNL--KRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV 83 (274)
Q Consensus 10 ~~~IgiIG~----G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~--~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~ 83 (274)
..+|+|||+ |+||..++++|.+.|| +|+.+ |++. +.. .|+.++.+..++.+..|++++|+|++.
T Consensus 13 p~~IavIGas~~~g~~G~~~~~~L~~~G~----~v~~v-np~~~g~~i-----~G~~~~~sl~el~~~~Dlvii~vp~~~ 82 (145)
T 2duw_A 13 TRTIALVGASDKPDRPSYRVMKYLLDQGY----HVIPV-SPKVAGKTL-----LGQQGYATLADVPEKVDMVDVFRNSEA 82 (145)
T ss_dssp CCCEEEESCCSCTTSHHHHHHHHHHHHTC----CEEEE-CSSSTTSEE-----TTEECCSSTTTCSSCCSEEECCSCSTH
T ss_pred CCEEEEECcCCCCCChHHHHHHHHHHCCC----EEEEe-CCccccccc-----CCeeccCCHHHcCCCCCEEEEEeCHHH
Confidence 468999999 8999999999999999 78877 7665 322 588888888888889999999999999
Q ss_pred HHHHHHHhccccCCCCEEEEecCCCCHHHHHHhh
Q 024016 84 VKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWT 117 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~ 117 (274)
+.+++.++.. ...+.+++. .++. .+++.+..
T Consensus 83 v~~v~~~~~~-~g~~~i~i~-~~~~-~~~l~~~a 113 (145)
T 2duw_A 83 AWGVAQEAIA-IGAKTLWLQ-LGVI-NEQAAVLA 113 (145)
T ss_dssp HHHHHHHHHH-HTCCEEECC-TTCC-CHHHHHHH
T ss_pred HHHHHHHHHH-cCCCEEEEc-CChH-HHHHHHHH
Confidence 9999988765 344555554 3444 44554444
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.2e-09 Score=93.94 Aligned_cols=86 Identities=9% Similarity=0.174 Sum_probs=69.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhC--CCCCCCcEE-EEeCCCHHHHHHHHH-cCceeccCchhhcc--CCCEEEEeeCcc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKS--GVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVE--YSDVVVFSVKPQ 82 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~--g~~~~~~v~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~--~aDiIil~v~~~ 82 (274)
+++||||||+|.||..++..|.+. ++ ++. ++ ++++++++.+.+ .|+..+++..++++ ++|+|++|+|+.
T Consensus 12 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~----~lvav~-d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~ 86 (354)
T 3q2i_A 12 RKIRFALVGCGRIANNHFGALEKHADRA----ELIDVC-DIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPSG 86 (354)
T ss_dssp SCEEEEEECCSTTHHHHHHHHHHTTTTE----EEEEEE-CSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCGG
T ss_pred CcceEEEEcCcHHHHHHHHHHHhCCCCe----EEEEEE-cCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCcH
Confidence 457999999999999999999987 45 655 77 999999888776 78888889988886 799999999998
Q ss_pred cHHHHHHHhccccCCCCEEE
Q 024016 83 VVKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vi 102 (274)
...+++.... ..|+-|+
T Consensus 87 ~h~~~~~~al---~~gk~v~ 103 (354)
T 3q2i_A 87 LHPTQSIECS---EAGFHVM 103 (354)
T ss_dssp GHHHHHHHHH---HTTCEEE
T ss_pred HHHHHHHHHH---HCCCCEE
Confidence 8777665543 3444455
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.99 E-value=4.6e-10 Score=99.39 Aligned_cols=104 Identities=17% Similarity=0.209 Sum_probs=76.7
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCc-ccH
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVV 84 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~-~~~ 84 (274)
.+...++|||||+|+||+.+|+.+...|+ +|++| ||++... ..+.....+..+++++||+|++++|. ...
T Consensus 152 ~el~gktvGIIGlG~IG~~vA~~l~~~G~----~V~~y-d~~~~~~----~~~~~~~~sl~ell~~aDvV~lhvPlt~~T 222 (416)
T 3k5p_A 152 REVRGKTLGIVGYGNIGSQVGNLAESLGM----TVRYY-DTSDKLQ----YGNVKPAASLDELLKTSDVVSLHVPSSKST 222 (416)
T ss_dssp CCSTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CTTCCCC----BTTBEECSSHHHHHHHCSEEEECCCC----
T ss_pred ccCCCCEEEEEeeCHHHHHHHHHHHHCCC----EEEEE-CCcchhc----ccCcEecCCHHHHHhhCCEEEEeCCCCHHH
Confidence 34556899999999999999999999999 99999 9875321 12445557889999999999999985 344
Q ss_pred HHHH-HHhccccCCCCEEEEecCCC--CHHHHHHhhC
Q 024016 85 KDVA-MQIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (274)
Q Consensus 85 ~~v~-~~i~~~l~~~~~vis~~~g~--~~~~l~~~~~ 118 (274)
+.++ .+....++++.++|+++-|- ..+.+.+.+.
T Consensus 223 ~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~ 259 (416)
T 3k5p_A 223 SKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQ 259 (416)
T ss_dssp -CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred hhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHH
Confidence 4444 34455678999999987553 3456666664
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=5.1e-10 Score=97.04 Aligned_cols=104 Identities=11% Similarity=0.093 Sum_probs=77.4
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcc-cH
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VV 84 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~-~~ 84 (274)
.....++|||||+|+||+.+|+.+...|+ +|++| +|++++. + +..+.. .+..+++++||+|++++|.. ..
T Consensus 141 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~----~V~~~-d~~~~~~--~-~~~~~~-~~l~ell~~aDvV~~~~P~~~~t 211 (333)
T 1dxy_A 141 KELGQQTVGVMGTGHIGQVAIKLFKGFGA----KVIAY-DPYPMKG--D-HPDFDY-VSLEDLFKQSDVIDLHVPGIEQN 211 (333)
T ss_dssp CCGGGSEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCSS--C-CTTCEE-CCHHHHHHHCSEEEECCCCCGGG
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHHCCC----EEEEE-CCCcchh--h-Hhcccc-CCHHHHHhcCCEEEEcCCCchhH
Confidence 34556899999999999999999999998 99999 9987543 1 122333 37788899999999999854 34
Q ss_pred HHHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 85 KDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 85 ~~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
+.++ .+....++++.++|+++.| +..+.+.+.+.
T Consensus 212 ~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~ 248 (333)
T 1dxy_A 212 THIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLK 248 (333)
T ss_dssp TTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred HHHhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHH
Confidence 4444 3455567899999988755 34456666665
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=98.98 E-value=3.4e-10 Score=99.13 Aligned_cols=103 Identities=16% Similarity=0.205 Sum_probs=75.2
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcc-c-
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-V- 83 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~-~- 83 (274)
.....++|||||+|+||+.+|+.|...|+ +|.+| ||+.+... .+. ...+..+++++||+|++++|.. .
T Consensus 115 ~~l~gktvGIIGlG~IG~~vA~~l~a~G~----~V~~~-d~~~~~~~----~~~-~~~sl~ell~~aDiV~l~~Plt~~g 184 (381)
T 3oet_A 115 FSLRDRTIGIVGVGNVGSRLQTRLEALGI----RTLLC-DPPRAARG----DEG-DFRTLDELVQEADVLTFHTPLYKDG 184 (381)
T ss_dssp CCGGGCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CHHHHHTT----CCS-CBCCHHHHHHHCSEEEECCCCCCSS
T ss_pred CccCCCEEEEEeECHHHHHHHHHHHHCCC----EEEEE-CCChHHhc----cCc-ccCCHHHHHhhCCEEEEcCcCCccc
Confidence 34556899999999999999999999999 99999 87543321 222 3457889999999999999832 3
Q ss_pred ---HHHHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 84 ---VKDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 84 ---~~~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
.+.++ .+....+++|.++|+++-| +..+.+.+.+.
T Consensus 185 ~~~T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~ 225 (381)
T 3oet_A 185 PYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLN 225 (381)
T ss_dssp TTCCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred cccchhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHH
Confidence 33333 3344567899999988754 34456666554
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=3.3e-09 Score=91.48 Aligned_cols=96 Identities=18% Similarity=0.294 Sum_probs=71.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH---c------CceeccCchhhccCCCEEEEeeCc
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES---I------GVKVLSDNNAVVEYSDVVVFSVKP 81 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~---~------g~~~~~~~~~~~~~aDiIil~v~~ 81 (274)
|||+|||+|.||.+++..|.+.|+. .+|++| |+++++++.+.. . ...+..+..+.+++||+||+|++.
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~g~~--~~V~l~-D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~aDvViiav~~ 77 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMKGFA--REMVLI-DVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGV 77 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCC--SEEEEE-CSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCC--CeEEEE-eCChHHHHHHHHHHHhhhhhcCCcEEEeCCHHHhCCCCEEEEccCC
Confidence 5899999999999999999999862 379999 999987766542 1 222222235668899999999974
Q ss_pred cc----------------HHHHHHHhccccCCCCEEEEecCCCCH
Q 024016 82 QV----------------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (274)
Q Consensus 82 ~~----------------~~~v~~~i~~~l~~~~~vis~~~g~~~ 110 (274)
.. ++++++.+.++ .|+..+|..++++..
T Consensus 78 ~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~~~~~ii~~tNp~~~ 121 (319)
T 1a5z_A 78 PQKPGETRLQLLGRNARVMKEIARNVSKY-APDSIVIVVTNPVDV 121 (319)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeCCcHHH
Confidence 32 46777777766 467777777777654
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.4e-09 Score=92.32 Aligned_cols=79 Identities=14% Similarity=0.246 Sum_probs=66.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhC-CCCCCCcEE-EEeCCCHHHHHHHHH-cCceeccCchhhcc--CCCEEEEeeCccc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVE--YSDVVVFSVKPQV 83 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~-g~~~~~~v~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~--~aDiIil~v~~~~ 83 (274)
+++||||||+|+||..++..|.+. ++ ++. ++ +|++++++.+.+ .|+..+++..++++ ++|+|++|+|+..
T Consensus 3 ~~~rvgiiG~G~~g~~~~~~l~~~~~~----~l~av~-d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~ 77 (344)
T 3euw_A 3 LTLRIALFGAGRIGHVHAANIAANPDL----ELVVIA-DPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTST 77 (344)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHCTTE----EEEEEE-CSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGGG
T ss_pred CceEEEEECCcHHHHHHHHHHHhCCCc----EEEEEE-CCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCchh
Confidence 457999999999999999999886 44 665 67 999999888776 68888889999888 7999999999988
Q ss_pred HHHHHHHhc
Q 024016 84 VKDVAMQIR 92 (274)
Q Consensus 84 ~~~v~~~i~ 92 (274)
..+++....
T Consensus 78 h~~~~~~al 86 (344)
T 3euw_A 78 HVDLITRAV 86 (344)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 777766544
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=3.4e-09 Score=92.63 Aligned_cols=90 Identities=17% Similarity=0.202 Sum_probs=68.6
Q ss_pred CCCCCCCeEEEEcccHHHH-HHHHHHHhC-CCCCCCcEE-EEeCCCHHHHHHHHH-cCceeccCchhhcc--CCCEEEEe
Q 024016 5 PIPAESFILGFIGAGKMAE-SIAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVE--YSDVVVFS 78 (274)
Q Consensus 5 ~~~~~~~~IgiIG~G~mG~-~~a~~L~~~-g~~~~~~v~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~--~aDiIil~ 78 (274)
|.+|+++||||||+|.||. .++..|.+. ++ ++. ++ +|++++++.+.+ .|+..+++..++++ +.|+|++|
T Consensus 22 ~~~m~~~rigiIG~G~~g~~~~~~~l~~~~~~----~l~av~-d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~ 96 (350)
T 3rc1_A 22 PANANPIRVGVIGCADIAWRRALPALEAEPLT----EVTAIA-SRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVP 96 (350)
T ss_dssp ----CCEEEEEESCCHHHHHTHHHHHHHCTTE----EEEEEE-ESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEEC
T ss_pred CCCCCceEEEEEcCcHHHHHHHHHHHHhCCCe----EEEEEE-cCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEC
Confidence 4556678999999999998 799999886 44 665 66 999999988876 68887788888886 58999999
Q ss_pred eCcccHHHHHHHhccccCCCCEEE
Q 024016 79 VKPQVVKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 79 v~~~~~~~v~~~i~~~l~~~~~vi 102 (274)
+|+....+++.... ..|+-|+
T Consensus 97 tp~~~h~~~~~~al---~aGk~Vl 117 (350)
T 3rc1_A 97 LPAVLHAEWIDRAL---RAGKHVL 117 (350)
T ss_dssp CCGGGHHHHHHHHH---HTTCEEE
T ss_pred CCcHHHHHHHHHHH---HCCCcEE
Confidence 99988777765543 3444444
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=9.2e-10 Score=96.00 Aligned_cols=91 Identities=16% Similarity=0.207 Sum_probs=69.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHHc-----C--ceeccCchhhccCCCEEEEeeC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESI-----G--VKVLSDNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~-g~~~~~~v~v~~~r~~~~~~~l~~~-----g--~~~~~~~~~~~~~aDiIil~v~ 80 (274)
+.++|+|||+|.||..++..|... +. .+|.+| ||++++++++.+. | +..+++..++++++|+|++|||
T Consensus 128 ~~~~v~iIGaG~~a~~~a~al~~~~~~---~~V~V~-~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTp 203 (350)
T 1x7d_A 128 NARKMALIGNGAQSEFQALAFHKHLGI---EEIVAY-DTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTA 203 (350)
T ss_dssp TCCEEEEECCSTTHHHHHHHHHHHSCC---CEEEEE-CSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCC
T ss_pred cCCeEEEECCcHHHHHHHHHHHHhCCC---cEEEEE-cCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEecc
Confidence 457999999999999999998653 22 389999 9999999988862 6 3456788888999999999999
Q ss_pred cccHHHHHHHhccccCCCCEEEEec
Q 024016 81 PQVVKDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 81 ~~~~~~v~~~i~~~l~~~~~vis~~ 105 (274)
......++. ...+++|+.|+.+.
T Consensus 204 s~~~~pvl~--~~~l~~G~~V~~vg 226 (350)
T 1x7d_A 204 DKAYATIIT--PDMLEPGMHLNAVG 226 (350)
T ss_dssp CSSEEEEEC--GGGCCTTCEEEECS
T ss_pred CCCCCceec--HHHcCCCCEEEECC
Confidence 763222222 14577888777653
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=98.94 E-value=6.5e-10 Score=96.31 Aligned_cols=103 Identities=16% Similarity=0.152 Sum_probs=76.3
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcc-cHH
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVK 85 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~-~~~ 85 (274)
....++|||||+|+||+.+++.+...|+ +|++| +|++++. + +..+.. .+..+++++||+|++++|.. ..+
T Consensus 143 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~----~V~~~-d~~~~~~--~-~~~~~~-~~l~ell~~aDvV~~~~p~t~~t~ 213 (331)
T 1xdw_A 143 EVRNCTVGVVGLGRIGRVAAQIFHGMGA----TVIGE-DVFEIKG--I-EDYCTQ-VSLDEVLEKSDIITIHAPYIKENG 213 (331)
T ss_dssp CGGGSEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCCS--C-TTTCEE-CCHHHHHHHCSEEEECCCCCTTTC
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC----EEEEE-CCCccHH--H-Hhcccc-CCHHHHHhhCCEEEEecCCchHHH
Confidence 3456899999999999999999999998 99999 9987643 2 222333 47788899999999999853 344
Q ss_pred HHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 86 DVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 86 ~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
.++ .+....++++.++|+++.| +..+.+.+.+.
T Consensus 214 ~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~ 249 (331)
T 1xdw_A 214 AVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVE 249 (331)
T ss_dssp CSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred HHhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHH
Confidence 444 3344567899999988754 34456666664
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.93 E-value=8.6e-10 Score=96.79 Aligned_cols=102 Identities=14% Similarity=0.183 Sum_probs=76.0
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCccc---
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV--- 83 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~--- 83 (274)
....++|||||+|+||+.+|+.|...|+ +|++| +|+++.. ..|.. ..+..+++++||+|++++|...
T Consensus 113 ~l~g~tvGIIGlG~IG~~vA~~l~~~G~----~V~~~-d~~~~~~----~~g~~-~~~l~ell~~aDvV~l~~Plt~~g~ 182 (380)
T 2o4c_A 113 DLAERTYGVVGAGQVGGRLVEVLRGLGW----KVLVC-DPPRQAR----EPDGE-FVSLERLLAEADVISLHTPLNRDGE 182 (380)
T ss_dssp CGGGCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CHHHHHH----STTSC-CCCHHHHHHHCSEEEECCCCCSSSS
T ss_pred ccCCCEEEEEeCCHHHHHHHHHHHHCCC----EEEEE-cCChhhh----ccCcc-cCCHHHHHHhCCEEEEeccCccccc
Confidence 3456899999999999999999999998 99999 8876432 23433 3577888999999999998433
Q ss_pred --HHHHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 84 --VKDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 84 --~~~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
...++ .+..+.++++.++|+++.| +..+.+.+.+.
T Consensus 183 ~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~ 222 (380)
T 2o4c_A 183 HPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLE 222 (380)
T ss_dssp SCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred cchhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHH
Confidence 44444 3455668899999988755 33455666554
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=98.92 E-value=5.6e-09 Score=91.32 Aligned_cols=98 Identities=19% Similarity=0.223 Sum_probs=72.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhC-CCCCCCcEE-EEeCCCHHHHHHHHH-cCceeccCchhhc--cCCCEEEEeeCccc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVV--EYSDVVVFSVKPQV 83 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~-g~~~~~~v~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~--~~aDiIil~v~~~~ 83 (274)
+++||||||+|.||..++..|.+. ++ ++. ++ +|++++++.+.+ .|+..+++..+++ .+.|+|++|+|+..
T Consensus 4 ~~~~vgiiG~G~~g~~~~~~l~~~~~~----~lvav~-d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~ 78 (354)
T 3db2_A 4 NPVGVAAIGLGRWAYVMADAYTKSEKL----KLVTCY-SRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPNDK 78 (354)
T ss_dssp CCEEEEEECCSHHHHHHHHHHTTCSSE----EEEEEE-CSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTTS
T ss_pred CcceEEEEccCHHHHHHHHHHHhCCCc----EEEEEE-CCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChHH
Confidence 457999999999999999999876 55 655 67 999999988876 6887788888888 56999999999887
Q ss_pred HHHHHHHhccccCCCCEEE-EecCCCCHHHHH
Q 024016 84 VKDVAMQIRPLLSRKKLLV-SVAAGVKLKDLQ 114 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vi-s~~~g~~~~~l~ 114 (274)
..+++.... ..|+-|+ .-.-+.+.+..+
T Consensus 79 h~~~~~~al---~~gk~vl~EKP~~~~~~~~~ 107 (354)
T 3db2_A 79 HAEVIEQCA---RSGKHIYVEKPISVSLDHAQ 107 (354)
T ss_dssp HHHHHHHHH---HTTCEEEEESSSCSSHHHHH
T ss_pred HHHHHHHHH---HcCCEEEEccCCCCCHHHHH
Confidence 766665543 2444444 222234444443
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.2e-08 Score=77.18 Aligned_cols=100 Identities=12% Similarity=0.188 Sum_probs=67.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec-cCc--hhh-----ccCCCEEEEeeC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDN--NAV-----VEYSDVVVFSVK 80 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~-~~~--~~~-----~~~aDiIil~v~ 80 (274)
++++|.|+|+|.+|..+++.|.+.|+ +|+++ ++++++.+.+.+.|..+. .+. .+. +.++|+||++++
T Consensus 5 ~~~~v~I~G~G~iG~~la~~L~~~g~----~V~~i-d~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~ 79 (141)
T 3llv_A 5 GRYEYIVIGSEAAGVGLVRELTAAGK----KVLAV-DKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGS 79 (141)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTC----CEEEE-ESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC----eEEEE-ECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecC
Confidence 35689999999999999999999999 99999 999999988887776432 121 111 458999999998
Q ss_pred cccHHHHHHHhccccCCCCEEEEecCCCCHHHH
Q 024016 81 PQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDL 113 (274)
Q Consensus 81 ~~~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l 113 (274)
++.....+......+....+++...+....+.+
T Consensus 80 ~~~~n~~~~~~a~~~~~~~iia~~~~~~~~~~l 112 (141)
T 3llv_A 80 DDEFNLKILKALRSVSDVYAIVRVSSPKKKEEF 112 (141)
T ss_dssp CHHHHHHHHHHHHHHCCCCEEEEESCGGGHHHH
T ss_pred CHHHHHHHHHHHHHhCCceEEEEEcChhHHHHH
Confidence 665443333333333344444444333333444
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.91 E-value=4.8e-09 Score=76.42 Aligned_cols=90 Identities=16% Similarity=0.186 Sum_probs=68.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC-CCCCCcEEEEeCCCHHHHHHHHHcCceec-------cCchhhccCCCEEEEeeCc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSG-VLPPDRICTAVHSNLKRRDAFESIGVKVL-------SDNNAVVEYSDVVVFSVKP 81 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g-~~~~~~v~v~~~r~~~~~~~l~~~g~~~~-------~~~~~~~~~aDiIil~v~~ 81 (274)
+++|.|+|+|.||..+++.|.+.| + +|+++ +|++++.+.+...++... .+..+.++++|+||.|+|.
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g~~----~v~~~-~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~ 79 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSSNY----SVTVA-DHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPF 79 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSSE----EEEEE-ESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCG
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCc----eEEEE-eCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCc
Confidence 468999999999999999999999 7 99999 999999888876554422 1223456789999999987
Q ss_pred ccHHHHHHHhccccCCCCEEEEecCC
Q 024016 82 QVVKDVAMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 82 ~~~~~v~~~i~~~l~~~~~vis~~~g 107 (274)
.....++.... ..+..++++++.
T Consensus 80 ~~~~~~~~~~~---~~g~~~~~~~~~ 102 (118)
T 3ic5_A 80 FLTPIIAKAAK---AAGAHYFDLTED 102 (118)
T ss_dssp GGHHHHHHHHH---HTTCEEECCCSC
T ss_pred hhhHHHHHHHH---HhCCCEEEecCc
Confidence 77666665443 345566665443
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=98.90 E-value=4.9e-09 Score=90.39 Aligned_cols=96 Identities=18% Similarity=0.222 Sum_probs=71.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH----H------cC--ceeccCchhhccCCCEEE
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S------IG--VKVLSDNNAVVEYSDVVV 76 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~----~------~g--~~~~~~~~~~~~~aDiIi 76 (274)
+.+||+|||+|.||.+++..|..+|+. +|++| |+++++++... . .. +...++. +.+++||+||
T Consensus 3 ~~~kI~VIGaG~~G~~ia~~la~~g~~---~V~l~-D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi 77 (317)
T 2ewd_A 3 ERRKIAVIGSGQIGGNIAYIVGKDNLA---DVVLF-DIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVI 77 (317)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCC---EEEEE-CSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCc---eEEEE-eCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEE
Confidence 457999999999999999999999862 79999 99987765431 1 12 3333555 7789999999
Q ss_pred EeeC----------------cccHHHHHHHhccccCCCCEEEEecCCCCH
Q 024016 77 FSVK----------------PQVVKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (274)
Q Consensus 77 l~v~----------------~~~~~~v~~~i~~~l~~~~~vis~~~g~~~ 110 (274)
++++ .+.++++++++.++. |+.+++..+++...
T Consensus 78 ~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~-~~~iii~~sNp~~~ 126 (317)
T 2ewd_A 78 ITASIPGRPKDDRSELLFGNARILDSVAEGVKKYC-PNAFVICITNPLDV 126 (317)
T ss_dssp ECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSHHH
T ss_pred EeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHC-CCcEEEEeCChHHH
Confidence 9993 123567777787764 68888888776543
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.7e-08 Score=75.23 Aligned_cols=92 Identities=11% Similarity=0.196 Sum_probs=66.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec-cCc--hh-----hccCCCEEEEeeCc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDN--NA-----VVEYSDVVVFSVKP 81 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~-~~~--~~-----~~~~aDiIil~v~~ 81 (274)
..+|.|+|+|.+|..+++.|.+.|+ +|+++ ++++++.+.+.+.|+.+. .+. .+ -++++|+||+++++
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~----~v~vi-d~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~ 81 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDI----PLVVI-ETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPN 81 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTC----CEEEE-ESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC----CEEEE-ECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCC
Confidence 4589999999999999999999999 99999 999999999888777532 221 11 14689999999987
Q ss_pred ccHHH-HHHHhccccCCCCEEEEecCC
Q 024016 82 QVVKD-VAMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 82 ~~~~~-v~~~i~~~l~~~~~vis~~~g 107 (274)
+.... ++..+. .+.++..+|.-...
T Consensus 82 ~~~n~~~~~~a~-~~~~~~~iiar~~~ 107 (140)
T 3fwz_A 82 GYEAGEIVASAR-AKNPDIEIIARAHY 107 (140)
T ss_dssp HHHHHHHHHHHH-HHCSSSEEEEEESS
T ss_pred hHHHHHHHHHHH-HHCCCCeEEEEECC
Confidence 65333 333332 23455556654443
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.8e-09 Score=89.10 Aligned_cols=80 Identities=23% Similarity=0.341 Sum_probs=62.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcE-EEEeCCCHHHHHHHHHcCceeccCchhhc-cCCCEEEEeeCcccHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAVV-EYSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v-~v~~~r~~~~~~~l~~~g~~~~~~~~~~~-~~aDiIil~v~~~~~~~v~ 88 (274)
|||||||+|+||..++++|.+.|+ ++ .+| ||++ +.+. .++++.+++ .++|+|++|+|++...+++
T Consensus 1 m~vgiIG~G~mG~~~~~~l~~~g~----~lv~v~-d~~~-~~~~-------~~~~~~~l~~~~~DvVv~~~~~~~~~~~~ 67 (236)
T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLERNGF----EIAAIL-DVRG-EHEK-------MVRGIDEFLQREMDVAVEAASQQAVKDYA 67 (236)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC----EEEEEE-CSSC-CCTT-------EESSHHHHTTSCCSEEEECSCHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHhcCCC----EEEEEE-ecCc-chhh-------hcCCHHHHhcCCCCEEEECCCHHHHHHHH
Confidence 589999999999999999998888 87 688 9885 3321 557788888 6899999999988777766
Q ss_pred HHhccccCCCCEEEEecC
Q 024016 89 MQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 89 ~~i~~~l~~~~~vis~~~ 106 (274)
... +..|+.+++.+.
T Consensus 68 ~~~---l~~G~~vv~~~~ 82 (236)
T 2dc1_A 68 EKI---LKAGIDLIVLST 82 (236)
T ss_dssp HHH---HHTTCEEEESCG
T ss_pred HHH---HHCCCcEEEECc
Confidence 543 456777776543
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.87 E-value=6.8e-09 Score=89.97 Aligned_cols=80 Identities=10% Similarity=0.174 Sum_probs=65.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC-CCCCCCcEE-EEeCCCHHHHHHHHH-cCc-eeccCchhhcc--CCCEEEEeeCc
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES-IGV-KVLSDNNAVVE--YSDVVVFSVKP 81 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~-g~~~~~~v~-v~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~--~aDiIil~v~~ 81 (274)
|+++||||||+|.||..++..|.+. ++ ++. ++ +|++++++.+.+ .|+ ..+++..++++ ++|+|++|+|+
T Consensus 3 m~~~~igiiG~G~~g~~~~~~l~~~~~~----~l~av~-d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~ 77 (330)
T 3e9m_A 3 LDKIRYGIMSTAQIVPRFVAGLRESAQA----EVRGIA-SRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYN 77 (330)
T ss_dssp CCCEEEEECSCCTTHHHHHHHHHHSSSE----EEEEEB-CSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCG
T ss_pred CCeEEEEEECchHHHHHHHHHHHhCCCc----EEEEEE-eCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCC
Confidence 4567999999999999999999885 44 665 66 999999888776 677 57788888887 79999999999
Q ss_pred ccHHHHHHHhc
Q 024016 82 QVVKDVAMQIR 92 (274)
Q Consensus 82 ~~~~~v~~~i~ 92 (274)
....+++....
T Consensus 78 ~~h~~~~~~al 88 (330)
T 3e9m_A 78 QGHYSAAKLAL 88 (330)
T ss_dssp GGHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88777665543
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.9e-09 Score=91.70 Aligned_cols=92 Identities=21% Similarity=0.291 Sum_probs=66.0
Q ss_pred CCCCCCCCCCCeEEEEcccHHHHHHHHHHHhC-CCCCCCcE-EEEeCCCHHHHHHHHHcCceeccCchhhcc--CCCEEE
Q 024016 1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKS-GVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAVVE--YSDVVV 76 (274)
Q Consensus 1 ~~~~~~~~~~~~IgiIG~G~mG~~~a~~L~~~-g~~~~~~v-~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~aDiIi 76 (274)
|+ .|..++++||||||+|+||..++..|.+. ++ ++ .++ +|++++++.+.+. +..+++..++++ ++|+|+
T Consensus 2 m~-~p~~~~~~~igiIG~G~~g~~~~~~l~~~~~~----~~v~v~-d~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~ 74 (315)
T 3c1a_A 2 MS-IPANNSPVRLALIGAGRWGKNYIRTIAGLPGA----ALVRLA-SSNPDNLALVPPG-CVIESDWRSVVSAPEVEAVI 74 (315)
T ss_dssp --------CCEEEEEEECTTTTTTHHHHHHHCTTE----EEEEEE-ESCHHHHTTCCTT-CEEESSTHHHHTCTTCCEEE
T ss_pred CC-CCCCCCcceEEEECCcHHHHHHHHHHHhCCCc----EEEEEE-eCCHHHHHHHHhh-CcccCCHHHHhhCCCCCEEE
Confidence 44 34445568999999999999999999885 44 54 477 9999887766554 666778888875 799999
Q ss_pred EeeCcccHHHHHHHhccccCCCCEEE
Q 024016 77 FSVKPQVVKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 77 l~v~~~~~~~v~~~i~~~l~~~~~vi 102 (274)
+|+|+....+++.... ..|+-|+
T Consensus 75 i~tp~~~h~~~~~~al---~~Gk~v~ 97 (315)
T 3c1a_A 75 IATPPATHAEITLAAI---ASGKAVL 97 (315)
T ss_dssp EESCGGGHHHHHHHHH---HTTCEEE
T ss_pred EeCChHHHHHHHHHHH---HCCCcEE
Confidence 9999988777776543 3455444
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.87 E-value=9.3e-09 Score=89.07 Aligned_cols=77 Identities=21% Similarity=0.334 Sum_probs=64.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhC-CCCCCCcEE-EEeCCCHHHHHHHHH-cCceeccCchhhcc--CCCEEEEeeCcccH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVE--YSDVVVFSVKPQVV 84 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~-g~~~~~~v~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~--~aDiIil~v~~~~~ 84 (274)
++||||||+|.||..++..|.+. ++ ++. ++ +|++++++.+.+ .|+. +++..++++ ++|+|++|+|+...
T Consensus 3 ~~~vgiiG~G~~g~~~~~~l~~~~~~----~l~av~-d~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~D~V~i~tp~~~h 76 (331)
T 4hkt_A 3 TVRFGLLGAGRIGKVHAKAVSGNADA----RLVAVA-DAFPAAAEAIAGAYGCE-VRTIDAIEAAADIDAVVICTPTDTH 76 (331)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTE----EEEEEE-CSSHHHHHHHHHHTTCE-ECCHHHHHHCTTCCEEEECSCGGGH
T ss_pred ceEEEEECCCHHHHHHHHHHhhCCCc----EEEEEE-CCCHHHHHHHHHHhCCC-cCCHHHHhcCCCCCEEEEeCCchhH
Confidence 46999999999999999999885 44 665 67 999999888876 6888 788888887 79999999999887
Q ss_pred HHHHHHhc
Q 024016 85 KDVAMQIR 92 (274)
Q Consensus 85 ~~v~~~i~ 92 (274)
.+++....
T Consensus 77 ~~~~~~al 84 (331)
T 4hkt_A 77 ADLIERFA 84 (331)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77765543
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.9e-08 Score=84.99 Aligned_cols=111 Identities=15% Similarity=0.245 Sum_probs=75.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH---c------CceeccCchhhccCCCEEEEeeCc
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES---I------GVKVLSDNNAVVEYSDVVVFSVKP 81 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~---~------g~~~~~~~~~~~~~aDiIil~v~~ 81 (274)
|||+|||+|.||.+++..|...|+. .+|.+| |+++++++.... . ..++..+..+.+++||+||++++.
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g~~--~eV~L~-D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~a~~~aDvVIi~~~~ 77 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRGSC--SELVLV-DRDEDRAQAEAEDIAHAAPVSHGTRVWHGGHSELADAQVVILTAGA 77 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCC--SEEEEE-CSSHHHHHHHHHHHTTSCCTTSCCEEEEECGGGGTTCSEEEECC--
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCC--CEEEEE-eCCHHHHHHHHHhhhhhhhhcCCeEEEECCHHHhCCCCEEEEcCCC
Confidence 5899999999999999999999873 379999 999886654322 1 123322335678899999999942
Q ss_pred c----------------cHHHHHHHhccccCCCCEEEEecCCCCH--HHHHHhhCCCceEEE
Q 024016 82 Q----------------VVKDVAMQIRPLLSRKKLLVSVAAGVKL--KDLQEWTGHSRFIRV 125 (274)
Q Consensus 82 ~----------------~~~~v~~~i~~~l~~~~~vis~~~g~~~--~~l~~~~~~~~~~~~ 125 (274)
. .++++++++.++ .|+.+++..+++... ..+.+..+..+++..
T Consensus 78 ~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~~~vi~~tNP~~~~~~~~~~~~~~~rviG~ 138 (304)
T 2v6b_A 78 NQKPGESRLDLLEKNADIFRELVPQITRA-APDAVLLVTSNPVDLLTDLATQLAPGQPVIGS 138 (304)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHH-CSSSEEEECSSSHHHHHHHHHHHSCSSCEEEC
T ss_pred CCCCCCcHHHHHHhHHHHHHHHHHHHHHh-CCCeEEEEecCchHHHHHHHHHhCChhcEEeC
Confidence 2 236666777776 577787777777654 223444443455543
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.9e-08 Score=88.23 Aligned_cols=87 Identities=18% Similarity=0.252 Sum_probs=68.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC-CCCCCCcEE-EEeCCCHHHHHHHHHcCceeccCchhhcc--CCCEEEEeeCccc
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFESIGVKVLSDNNAVVE--YSDVVVFSVKPQV 83 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~-g~~~~~~v~-v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~aDiIil~v~~~~ 83 (274)
|+++||||||+|.||...+..|.+. ++ ++. ++ ++++++++...+.|+..++|..++++ +.|+|++|+|+..
T Consensus 3 m~~~~vgiiG~G~~g~~~~~~l~~~~~~----~l~av~-d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~ 77 (359)
T 3e18_A 3 LKKYQLVIVGYGGMGSYHVTLASAADNL----EVHGVF-DILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPNDS 77 (359)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHHTSTTE----EEEEEE-CSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCGGG
T ss_pred CCcCcEEEECcCHHHHHHHHHHHhCCCc----EEEEEE-cCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCcHH
Confidence 4567999999999999999999876 44 665 56 99999887666688888888888887 7899999999988
Q ss_pred HHHHHHHhccccCCCCEEE
Q 024016 84 VKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vi 102 (274)
..++..... ..|+-|+
T Consensus 78 h~~~~~~al---~aGkhVl 93 (359)
T 3e18_A 78 HKELAISAL---EAGKHVV 93 (359)
T ss_dssp HHHHHHHHH---HTTCEEE
T ss_pred HHHHHHHHH---HCCCCEE
Confidence 777665543 3455455
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.7e-08 Score=87.98 Aligned_cols=97 Identities=19% Similarity=0.319 Sum_probs=71.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhC-CCCCCCcEE-EEeCCCHHHHHHHHH-cCc-eeccCchhhcc--CCCEEEEeeCccc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES-IGV-KVLSDNNAVVE--YSDVVVFSVKPQV 83 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~-g~~~~~~v~-v~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~--~aDiIil~v~~~~ 83 (274)
++||||||+|+||..++..|.+. ++ ++. ++ +|++++++.+.+ .|+ ..+++..++++ ++|+|++|+|+..
T Consensus 2 ~~rvgiIG~G~~g~~~~~~l~~~~~~----~l~av~-d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~ 76 (344)
T 3ezy_A 2 SLRIGVIGLGRIGTIHAENLKMIDDA----ILYAIS-DVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTNT 76 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHGGGSTTE----EEEEEE-CSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGGG
T ss_pred eeEEEEEcCCHHHHHHHHHHHhCCCc----EEEEEE-CCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCCcc
Confidence 36999999999999999999875 34 665 67 999999888776 676 47788888887 7999999999988
Q ss_pred HHHHHHHhccccCCCCEEE-EecCCCCHHHHH
Q 024016 84 VKDVAMQIRPLLSRKKLLV-SVAAGVKLKDLQ 114 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vi-s~~~g~~~~~l~ 114 (274)
..+++.... ..|+-|+ .-.-+.+.+...
T Consensus 77 h~~~~~~al---~~gk~v~~EKP~~~~~~e~~ 105 (344)
T 3ezy_A 77 HSELVIACA---KAKKHVFCEKPLSLNLADVD 105 (344)
T ss_dssp HHHHHHHHH---HTTCEEEEESCSCSCHHHHH
T ss_pred hHHHHHHHH---hcCCeEEEECCCCCCHHHHH
Confidence 777665543 2444444 221234444433
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.4e-08 Score=83.92 Aligned_cols=90 Identities=21% Similarity=0.177 Sum_probs=66.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEE-EEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~-v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~ 86 (274)
|+++||+|+|+|+||+.+++.+.+.++ ++. ++ +|+++. ..|+.++++..++. ++|+||-++.|+.+.+
T Consensus 1 M~MmkI~ViGaGrMG~~i~~~l~~~~~----eLva~~-d~~~~~-----~~gv~v~~dl~~l~-~~DVvIDft~p~a~~~ 69 (243)
T 3qy9_A 1 MASMKILLIGYGAMNQRVARLAEEKGH----EIVGVI-ENTPKA-----TTPYQQYQHIADVK-GADVAIDFSNPNLLFP 69 (243)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTC----EEEEEE-CSSCC-------CCSCBCSCTTTCT-TCSEEEECSCHHHHHH
T ss_pred CCceEEEEECcCHHHHHHHHHHHhCCC----EEEEEE-ecCccc-----cCCCceeCCHHHHh-CCCEEEEeCChHHHHH
Confidence 346899999999999999999998875 655 46 887652 36888888888877 9999998888877766
Q ss_pred HHHHhccccCCCCEEEEecCCCCHHHH
Q 024016 87 VAMQIRPLLSRKKLLVSVAAGVKLKDL 113 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~~g~~~~~l 113 (274)
.+. +..+..+|..+.|.+.+.+
T Consensus 70 ~~~-----l~~g~~vVigTTG~s~e~~ 91 (243)
T 3qy9_A 70 LLD-----EDFHLPLVVATTGEKEKLL 91 (243)
T ss_dssp HHT-----SCCCCCEEECCCSSHHHHH
T ss_pred HHH-----HhcCCceEeCCCCCCHHHH
Confidence 664 3455556656667765444
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.9e-08 Score=86.44 Aligned_cols=88 Identities=13% Similarity=0.261 Sum_probs=67.7
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHH-hC-CCCCCCcE-EEEeCCCHHHHHHHHH-cCc-eeccCchhhcc--CCCEEEEee
Q 024016 7 PAESFILGFIGAGKMAESIAKGVA-KS-GVLPPDRI-CTAVHSNLKRRDAFES-IGV-KVLSDNNAVVE--YSDVVVFSV 79 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~-~~-g~~~~~~v-~v~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~--~aDiIil~v 79 (274)
+++++||||||+|.||..++..|. +. ++ ++ .++ ++++++++.+.+ .|+ ..+++..++++ ++|+|++|+
T Consensus 5 ~~~~~~v~iiG~G~ig~~~~~~l~~~~~~~----~~vav~-d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~t 79 (346)
T 3cea_A 5 TRKPLRAAIIGLGRLGERHARHLVNKIQGV----KLVAAC-ALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVA 79 (346)
T ss_dssp CCCCEEEEEECCSTTHHHHHHHHHHTCSSE----EEEEEE-CSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECS
T ss_pred CCCcceEEEEcCCHHHHHHHHHHHhcCCCc----EEEEEe-cCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeC
Confidence 345679999999999999999998 53 44 64 567 999999888776 677 66778888876 699999999
Q ss_pred CcccHHHHHHHhccccCCCCEEE
Q 024016 80 KPQVVKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 80 ~~~~~~~v~~~i~~~l~~~~~vi 102 (274)
|+....+++.... ..|+.|+
T Consensus 80 p~~~h~~~~~~al---~~G~~v~ 99 (346)
T 3cea_A 80 PTPFHPEMTIYAM---NAGLNVF 99 (346)
T ss_dssp CGGGHHHHHHHHH---HTTCEEE
T ss_pred ChHhHHHHHHHHH---HCCCEEE
Confidence 9887766665443 3455554
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.8e-08 Score=87.03 Aligned_cols=88 Identities=19% Similarity=0.289 Sum_probs=67.4
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHH-h-CCCCCCCcEE-EEeCCCHHHHHHHHH-cC--ceeccCchhhcc--CCCEEEEe
Q 024016 7 PAESFILGFIGAGKMAESIAKGVA-K-SGVLPPDRIC-TAVHSNLKRRDAFES-IG--VKVLSDNNAVVE--YSDVVVFS 78 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~-~-~g~~~~~~v~-v~~~r~~~~~~~l~~-~g--~~~~~~~~~~~~--~aDiIil~ 78 (274)
.|+++||||||+|.||..++..|. + .++ ++. ++ ++++++++.+.+ .| +..+++..++++ +.|+|++|
T Consensus 20 ~m~~~rvgiIG~G~~g~~~~~~l~~~~~~~----~lvav~-d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~ 94 (357)
T 3ec7_A 20 QGMTLKAGIVGIGMIGSDHLRRLANTVSGV----EVVAVC-DIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIIT 94 (357)
T ss_dssp --CCEEEEEECCSHHHHHHHHHHHHTCTTE----EEEEEE-CSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEEC
T ss_pred CCCeeeEEEECCcHHHHHHHHHHHhhCCCc----EEEEEE-eCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEc
Confidence 345679999999999999999998 4 344 665 67 999999888776 57 677888888876 58999999
Q ss_pred eCcccHHHHHHHhccccCCCCEEE
Q 024016 79 VKPQVVKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 79 v~~~~~~~v~~~i~~~l~~~~~vi 102 (274)
+|+....+++.... ..|+-|+
T Consensus 95 tp~~~h~~~~~~al---~aGk~Vl 115 (357)
T 3ec7_A 95 ASNEAHADVAVAAL---NANKYVF 115 (357)
T ss_dssp SCGGGHHHHHHHHH---HTTCEEE
T ss_pred CCcHHHHHHHHHHH---HCCCCEE
Confidence 99988777665543 3444444
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.9e-08 Score=86.70 Aligned_cols=87 Identities=10% Similarity=0.081 Sum_probs=64.6
Q ss_pred CCCCeEEEEcccHHHHH-HHHHHHhC-CCCCCCcEE-EEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCccc
Q 024016 8 AESFILGFIGAGKMAES-IAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQV 83 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~-~a~~L~~~-g~~~~~~v~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~~ 83 (274)
|+++||||||+|.||.. ++..|.+. ++ ++. ++ +|++++++.+.+ .|+..+++.+++..++|+|++|+|+..
T Consensus 3 m~~~~vgiiG~G~~g~~~~~~~l~~~~~~----~lvav~-d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~tp~~~ 77 (319)
T 1tlt_A 3 LKKLRIGVVGLGGIAQKAWLPVLAAASDW----TLQGAW-SPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTAS 77 (319)
T ss_dssp --CEEEEEECCSTHHHHTHHHHHHSCSSE----EEEEEE-CSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTH
T ss_pred CCcceEEEECCCHHHHHHHHHHHHhCCCe----EEEEEE-CCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEeCCchh
Confidence 45679999999999996 88888763 44 665 77 999998887776 577666676666568999999999887
Q ss_pred HHHHHHHhccccCCCCEEE
Q 024016 84 VKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vi 102 (274)
..+++.... ..|+-|+
T Consensus 78 h~~~~~~al---~~G~~v~ 93 (319)
T 1tlt_A 78 HFDVVSTLL---NAGVHVC 93 (319)
T ss_dssp HHHHHHHHH---HTTCEEE
T ss_pred HHHHHHHHH---HcCCeEE
Confidence 766665543 3455444
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=3.2e-08 Score=86.17 Aligned_cols=85 Identities=16% Similarity=0.286 Sum_probs=66.9
Q ss_pred CCeEEEEcccHHHHHHHHHHH-h-CCCCCCCcEE-EEeCCCHHHHHHHHH-cC--ceeccCchhhccC--CCEEEEeeCc
Q 024016 10 SFILGFIGAGKMAESIAKGVA-K-SGVLPPDRIC-TAVHSNLKRRDAFES-IG--VKVLSDNNAVVEY--SDVVVFSVKP 81 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~-~-~g~~~~~~v~-v~~~r~~~~~~~l~~-~g--~~~~~~~~~~~~~--aDiIil~v~~ 81 (274)
++||||||+|.||..++..|. + .++ ++. ++ +|++++++.+.+ .| ...+++..+++++ .|+|++|+|+
T Consensus 2 ~~rigiIG~G~~g~~~~~~l~~~~~~~----~l~av~-d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~ 76 (344)
T 3mz0_A 2 SLRIGVIGTGAIGKEHINRITNKLSGA----EIVAVT-DVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWG 76 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCSSE----EEEEEE-CSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCG
T ss_pred eEEEEEECccHHHHHHHHHHHhhCCCc----EEEEEE-cCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCc
Confidence 369999999999999999998 4 344 665 66 999999988876 67 6778899888875 8999999999
Q ss_pred ccHHHHHHHhccccCCCCEEE
Q 024016 82 QVVKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 82 ~~~~~v~~~i~~~l~~~~~vi 102 (274)
....+++.... ..|+-|+
T Consensus 77 ~~h~~~~~~al---~~Gk~vl 94 (344)
T 3mz0_A 77 PAHESSVLKAI---KAQKYVF 94 (344)
T ss_dssp GGHHHHHHHHH---HTTCEEE
T ss_pred hhHHHHHHHHH---HCCCcEE
Confidence 88777765543 3444444
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=98.78 E-value=2.4e-08 Score=89.89 Aligned_cols=101 Identities=12% Similarity=0.115 Sum_probs=77.1
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHH
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~ 86 (274)
....++|+|||+|.||..+|+.+...|. +|++| +|++.+.......|+.. .+..+++++||+|++++....+-
T Consensus 254 ~l~GktVgIIG~G~IG~~vA~~l~~~G~----~Viv~-d~~~~~~~~a~~~g~~~-~~l~ell~~aDiVi~~~~t~~lI- 326 (479)
T 1v8b_A 254 LISGKIVVICGYGDVGKGCASSMKGLGA----RVYIT-EIDPICAIQAVMEGFNV-VTLDEIVDKGDFFITCTGNVDVI- 326 (479)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHHTC----EEEEE-CSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECCSSSSSB-
T ss_pred ccCCCEEEEEeeCHHHHHHHHHHHhCcC----EEEEE-eCChhhHHHHHHcCCEe-cCHHHHHhcCCEEEECCChhhhc-
Confidence 4456899999999999999999999998 99999 99998765555567765 47888999999999997433221
Q ss_pred HHHHhccccCCCCEEEEecCC---CCHHHHHH
Q 024016 87 VAMQIRPLLSRKKLLVSVAAG---VKLKDLQE 115 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~~g---~~~~~l~~ 115 (274)
-.+....+++|.++|++..+ +..+.+.+
T Consensus 327 -~~~~l~~MK~gailiNvgrg~~EId~~aL~~ 357 (479)
T 1v8b_A 327 -KLEHLLKMKNNAVVGNIGHFDDEIQVNELFN 357 (479)
T ss_dssp -CHHHHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred -CHHHHhhcCCCcEEEEeCCCCccccchhhhc
Confidence 02333457899999988755 35566665
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.78 E-value=3.8e-08 Score=84.92 Aligned_cols=77 Identities=19% Similarity=0.240 Sum_probs=60.3
Q ss_pred CCeEEEEcccHHHH-HHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHH-cCcee-ccCchhhc-cCCCEEEEeeCcccH
Q 024016 10 SFILGFIGAGKMAE-SIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFES-IGVKV-LSDNNAVV-EYSDVVVFSVKPQVV 84 (274)
Q Consensus 10 ~~~IgiIG~G~mG~-~~a~~L~~~-g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~-~~~~~~~~-~~aDiIil~v~~~~~ 84 (274)
++||||||+|+||. .++..|.+. ++ ++.++ +|++++++.+.+ .|+.. ..+..+.+ .++|+|++|+|++..
T Consensus 2 ~~~igiIG~G~ig~~~~~~~l~~~~~~----~l~v~-d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~~h 76 (323)
T 1xea_A 2 SLKIAMIGLGDIAQKAYLPVLAQWPDI----ELVLC-TRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVH 76 (323)
T ss_dssp CEEEEEECCCHHHHHTHHHHHTTSTTE----EEEEE-CSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGH
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCCc----eEEEE-eCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCchhH
Confidence 36999999999998 599998764 44 77788 999999988776 67653 44545555 679999999999887
Q ss_pred HHHHHHh
Q 024016 85 KDVAMQI 91 (274)
Q Consensus 85 ~~v~~~i 91 (274)
.+++...
T Consensus 77 ~~~~~~a 83 (323)
T 1xea_A 77 STLAAFF 83 (323)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776554
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.76 E-value=5.9e-08 Score=78.90 Aligned_cols=92 Identities=17% Similarity=0.163 Sum_probs=67.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceec-cC---c---hh-hccCCCEEEEeeCc
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVL-SD---N---NA-VVEYSDVVVFSVKP 81 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~-~~---~---~~-~~~~aDiIil~v~~ 81 (274)
|||.|+|+|.+|..+++.|.+.|+ +|+++ ++++++.+.+.+ .|..+. .+ . .+ -++++|+||+++++
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~----~v~vi-d~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~ 75 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKY----GVVII-NKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPR 75 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTC----CEEEE-ESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC----eEEEE-ECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCC
Confidence 589999999999999999999999 99999 999999988765 465432 12 1 12 25789999999998
Q ss_pred ccHHHHHHHhccccCCCCEEEEecCC
Q 024016 82 QVVKDVAMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 82 ~~~~~v~~~i~~~l~~~~~vis~~~g 107 (274)
+.....+..+...+.+...+|.....
T Consensus 76 d~~n~~~~~~a~~~~~~~~iia~~~~ 101 (218)
T 3l4b_C 76 DEVNLFIAQLVMKDFGVKRVVSLVND 101 (218)
T ss_dssp HHHHHHHHHHHHHTSCCCEEEECCCS
T ss_pred cHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 87666555554443455556654443
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=4.7e-08 Score=83.89 Aligned_cols=92 Identities=18% Similarity=0.213 Sum_probs=65.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhC--CCCCCCcEEEEeCCCHHHHHHHHH---c-------C--ceeccCchhhccCCCEEE
Q 024016 11 FILGFIGAGKMAESIAKGVAKS--GVLPPDRICTAVHSNLKRRDAFES---I-------G--VKVLSDNNAVVEYSDVVV 76 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~--g~~~~~~v~v~~~r~~~~~~~l~~---~-------g--~~~~~~~~~~~~~aDiIi 76 (274)
|||+|||+|.||.+++..|..+ |+ +|++| |+++++++.+.. . . +..+++..+ +++||+||
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~----~V~l~-D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvVi 74 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLAR----ELVLL-DVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVI 74 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCS----EEEEE-CSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCC----EEEEE-eCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEE
Confidence 5899999999999999999885 56 99999 999887765431 1 1 233355555 89999999
Q ss_pred EeeCcc----------------cHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 77 FSVKPQ----------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 77 l~v~~~----------------~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
+|+|.. .++++.+.+.++ .++..++..+++..
T Consensus 75 iav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~~~~~viv~tNP~~ 122 (310)
T 1guz_A 75 ITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKH-SKNPIIIVVSNPLD 122 (310)
T ss_dssp ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CSSCEEEECCSSHH
T ss_pred EeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEEcCchH
Confidence 999521 124555556665 46667776766554
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=98.75 E-value=1.8e-08 Score=86.96 Aligned_cols=87 Identities=16% Similarity=0.170 Sum_probs=66.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c-----CceeccCchhhccCCCEEEEeeCcc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I-----GVKVLSDNNAVVEYSDVVVFSVKPQ 82 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~-----g~~~~~~~~~~~~~aDiIil~v~~~ 82 (274)
+.++|+|||+|.||..++..|.+..- ..+|.+| ||++++++++.+ . .+. +++..+++ ++|+|++|||..
T Consensus 124 ~~~~v~iIGaG~~a~~~~~al~~~~~--~~~V~v~-~r~~~~a~~la~~~~~~~~~~~-~~~~~e~v-~aDvVi~aTp~~ 198 (322)
T 1omo_A 124 NSSVFGFIGCGTQAYFQLEALRRVFD--IGEVKAY-DVREKAAKKFVSYCEDRGISAS-VQPAEEAS-RCDVLVTTTPSR 198 (322)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSC--CCEEEEE-CSSHHHHHHHHHHHHHTTCCEE-ECCHHHHT-SSSEEEECCCCS
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHhCC--ccEEEEE-CCCHHHHHHHHHHHHhcCceEE-ECCHHHHh-CCCEEEEeeCCC
Confidence 45799999999999999999987321 1389999 999999988876 2 244 67778888 999999999864
Q ss_pred cHHHHHHHhccccCCCCEEEEe
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~ 104 (274)
. .++. ...+++|+.|+++
T Consensus 199 ~--pv~~--~~~l~~G~~V~~i 216 (322)
T 1omo_A 199 K--PVVK--AEWVEEGTHINAI 216 (322)
T ss_dssp S--CCBC--GGGCCTTCEEEEC
T ss_pred C--ceec--HHHcCCCeEEEEC
Confidence 3 2221 1457888877765
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=98.74 E-value=4.7e-08 Score=84.50 Aligned_cols=93 Identities=15% Similarity=0.186 Sum_probs=68.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH----H----c--C--ceeccCchhhccCCCEEEEe
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S----I--G--VKVLSDNNAVVEYSDVVVFS 78 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~----~----~--g--~~~~~~~~~~~~~aDiIil~ 78 (274)
+||+|||+|.||.+++..|...|+. +|.+| |+++++++... . . . ++.+++. +.+++||+||++
T Consensus 15 ~kI~ViGaG~vG~~iA~~la~~g~~---~V~L~-Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~a 89 (328)
T 2hjr_A 15 KKISIIGAGQIGSTIALLLGQKDLG---DVYMF-DIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIIT 89 (328)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCC---EEEEE-CSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCC---eEEEE-ECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEc
Confidence 6999999999999999999999873 69999 99987766422 1 1 1 3344555 778999999999
Q ss_pred e--Cc--------------ccHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 79 V--KP--------------QVVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 79 v--~~--------------~~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
+ |. ..++++++++..+. |+.+++..++++.
T Consensus 90 vg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~ 135 (328)
T 2hjr_A 90 AGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICITNPLD 135 (328)
T ss_dssp CSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHH
T ss_pred CCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEecCchH
Confidence 8 32 12556667777664 7777766666544
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=3e-08 Score=89.58 Aligned_cols=101 Identities=9% Similarity=0.066 Sum_probs=75.6
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCccc-HH
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-VK 85 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~-~~ 85 (274)
....++|+|||+|.||..+|+.+...|. +|++| +|++.+.......|... .+..++++++|+|++++.... +.
T Consensus 274 ~L~GktVgIIG~G~IG~~vA~~l~~~G~----~V~v~-d~~~~~~~~a~~~G~~~-~~l~ell~~aDiVi~~~~t~~lI~ 347 (494)
T 3d64_A 274 MIAGKIAVVAGYGDVGKGCAQSLRGLGA----TVWVT-EIDPICALQAAMEGYRV-VTMEYAADKADIFVTATGNYHVIN 347 (494)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTTC----EEEEE-CSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECSSSSCSBC
T ss_pred ccCCCEEEEEccCHHHHHHHHHHHHCCC----EEEEE-eCChHhHHHHHHcCCEe-CCHHHHHhcCCEEEECCCcccccC
Confidence 3456899999999999999999999998 99999 99998754444567765 378889999999999984332 21
Q ss_pred HHHHHhccccCCCCEEEEecCC---CCHHHHHHhh
Q 024016 86 DVAMQIRPLLSRKKLLVSVAAG---VKLKDLQEWT 117 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~~g---~~~~~l~~~~ 117 (274)
.+....++++.++|++..+ +..+.+ +.+
T Consensus 348 ---~~~l~~MK~gAilINvgrg~veID~~aL-~AL 378 (494)
T 3d64_A 348 ---HDHMKAMRHNAIVCNIGHFDSEIDVAST-RQY 378 (494)
T ss_dssp ---HHHHHHCCTTEEEEECSSSSCSBCCGGG-TTS
T ss_pred ---HHHHhhCCCCcEEEEcCCCcchhchHHH-Hhh
Confidence 2233456889999988755 244555 444
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.2e-08 Score=89.24 Aligned_cols=92 Identities=11% Similarity=0.125 Sum_probs=70.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceecc-------------------------
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLS------------------------- 63 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~------------------------- 63 (274)
...||+|||+|.||..+++.+...|. +|++| ||++++.+.+.+.|.+...
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lGa----~V~v~-D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~ 257 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLGA----KTTGY-DVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQ 257 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHTC----EEEEE-CSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHH
Confidence 34699999999999999999999998 99999 9999999888887765432
Q ss_pred CchhhccCCCEEEEee--CcccHHHHH-HHhccccCCCCEEEEec
Q 024016 64 DNNAVVEYSDVVVFSV--KPQVVKDVA-MQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 64 ~~~~~~~~aDiIil~v--~~~~~~~v~-~~i~~~l~~~~~vis~~ 105 (274)
+..+.++++|+||.++ |......++ ++....+++|.+||+++
T Consensus 258 ~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA 302 (381)
T 3p2y_A 258 ALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLA 302 (381)
T ss_dssp HHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred HHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEe
Confidence 3456788999999986 422111111 34445577999999875
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=3.9e-08 Score=87.10 Aligned_cols=100 Identities=14% Similarity=0.135 Sum_probs=76.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v 87 (274)
...++|+|||+|.+|..+++.|...|. +|+++ ++++.+.......|.... +..++++.+|+|+++.....+-.
T Consensus 209 L~GktVgIiG~G~IG~~vA~~Lka~Ga----~Viv~-D~~p~~a~~A~~~G~~~~-sL~eal~~ADVVilt~gt~~iI~- 281 (436)
T 3h9u_A 209 IAGKTACVCGYGDVGKGCAAALRGFGA----RVVVT-EVDPINALQAAMEGYQVL-LVEDVVEEAHIFVTTTGNDDIIT- 281 (436)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTTCEEC-CHHHHTTTCSEEEECSSCSCSBC-
T ss_pred ccCCEEEEEeeCHHHHHHHHHHHHCCC----EEEEE-CCChhhhHHHHHhCCeec-CHHHHHhhCCEEEECCCCcCccC-
Confidence 356799999999999999999999998 99999 999987766666787654 78899999999998765433211
Q ss_pred HHHhccccCCCCEEEEecCC---CCHHHHHH
Q 024016 88 AMQIRPLLSRKKLLVSVAAG---VKLKDLQE 115 (274)
Q Consensus 88 ~~~i~~~l~~~~~vis~~~g---~~~~~l~~ 115 (274)
.+....++++.+||++..+ +..+.+.+
T Consensus 282 -~e~l~~MK~gAIVINvgRg~vEID~~~L~~ 311 (436)
T 3h9u_A 282 -SEHFPRMRDDAIVCNIGHFDTEIQVAWLKA 311 (436)
T ss_dssp -TTTGGGCCTTEEEEECSSSGGGBCHHHHHH
T ss_pred -HHHHhhcCCCcEEEEeCCCCCccCHHHHHh
Confidence 2344557899999988654 34455554
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.9e-08 Score=87.08 Aligned_cols=88 Identities=17% Similarity=0.204 Sum_probs=64.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEE-EEeCCCHHHHHHHHH-cCce-eccCchhhcc--CCCEEEEeeCcc
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFES-IGVK-VLSDNNAVVE--YSDVVVFSVKPQ 82 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~-v~~~r~~~~~~~l~~-~g~~-~~~~~~~~~~--~aDiIil~v~~~ 82 (274)
|+++||||||+|+||..++..|.+.+. .++. ++ +|++++++.+.+ .|+. .+++..++++ +.|+|++|+|+.
T Consensus 3 m~~~rigiiG~G~ig~~~~~~l~~~~~---~~~~av~-d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~ 78 (329)
T 3evn_A 3 LSKVRYGVVSTAKVAPRFIEGVRLAGN---GEVVAVS-SRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQ 78 (329)
T ss_dssp --CEEEEEEBCCTTHHHHHHHHHHHCS---EEEEEEE-CSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGG
T ss_pred CCceEEEEEechHHHHHHHHHHHhCCC---cEEEEEE-cCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcH
Confidence 456799999999999999999987643 1554 66 999998877766 5764 6788888887 789999999998
Q ss_pred cHHHHHHHhccccCCCCEEE
Q 024016 83 VVKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vi 102 (274)
...+++.... ..|+-|+
T Consensus 79 ~h~~~~~~al---~aGk~Vl 95 (329)
T 3evn_A 79 DHYKVAKAAL---LAGKHVL 95 (329)
T ss_dssp GHHHHHHHHH---HTTCEEE
T ss_pred HHHHHHHHHH---HCCCeEE
Confidence 8777665543 3444444
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=98.71 E-value=7.7e-08 Score=83.20 Aligned_cols=84 Identities=17% Similarity=0.267 Sum_probs=65.4
Q ss_pred CeEEEEcccHHHHHH-HHHHHhCCCCCCCcEE-EEeCCCHHHHHHHHH-cCce-eccCchhhcc--CCCEEEEeeCcccH
Q 024016 11 FILGFIGAGKMAESI-AKGVAKSGVLPPDRIC-TAVHSNLKRRDAFES-IGVK-VLSDNNAVVE--YSDVVVFSVKPQVV 84 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~-a~~L~~~g~~~~~~v~-v~~~r~~~~~~~l~~-~g~~-~~~~~~~~~~--~aDiIil~v~~~~~ 84 (274)
+||||||+|.||..+ +..|.+.++ ++. ++ +|++++++.+.+ .|+. .+++..++++ ++|+|++|+|++..
T Consensus 1 ~~vgiiG~G~~g~~~~~~~l~~~~~----~~vav~-d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h 75 (332)
T 2glx_A 1 NRWGLIGASTIAREWVIGAIRATGG----EVVSMM-STSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELH 75 (332)
T ss_dssp CEEEEESCCHHHHHTHHHHHHHTTC----EEEEEE-CSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGGGH
T ss_pred CeEEEEcccHHHHHhhhHHhhcCCC----eEEEEE-CCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChhHh
Confidence 489999999999998 888887665 665 67 999999888776 6764 6678888876 59999999999887
Q ss_pred HHHHHHhccccCCCCEEE
Q 024016 85 KDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vi 102 (274)
.+++.... ..|+.|+
T Consensus 76 ~~~~~~al---~~Gk~v~ 90 (332)
T 2glx_A 76 REQTLAAI---RAGKHVL 90 (332)
T ss_dssp HHHHHHHH---HTTCEEE
T ss_pred HHHHHHHH---HCCCeEE
Confidence 77665543 3455454
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=2.6e-08 Score=75.08 Aligned_cols=92 Identities=15% Similarity=0.255 Sum_probs=62.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec-c---Cch---hh-ccCCCEEEEeeCc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-S---DNN---AV-VEYSDVVVFSVKP 81 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~-~---~~~---~~-~~~aDiIil~v~~ 81 (274)
+++|.|+|+|.+|..+++.|.+.|+ +|+++ +|++++.+.+.+.+.... . +.. ++ ..++|+||.|+++
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~----~v~~~-d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~ 80 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGH----EVLAV-DINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGA 80 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC----CCEEE-ESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCS
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCC
Confidence 4579999999999999999999998 89999 999988877665554322 1 111 22 5679999999986
Q ss_pred c-cHHHHHHHhccccCCCCEEEEecCC
Q 024016 82 Q-VVKDVAMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 82 ~-~~~~v~~~i~~~l~~~~~vis~~~g 107 (274)
+ .....+......+.+. .++..+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~-~ii~~~~~ 106 (144)
T 2hmt_A 81 NIQASTLTTLLLKELDIP-NIWVKAQN 106 (144)
T ss_dssp CHHHHHHHHHHHHHTTCS-EEEEECCS
T ss_pred chHHHHHHHHHHHHcCCC-eEEEEeCC
Confidence 5 3332233333334455 44444443
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=98.70 E-value=5.6e-08 Score=85.20 Aligned_cols=89 Identities=15% Similarity=0.297 Sum_probs=66.9
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhC-CCCCCCcE-EEEeCCCHHHHHHHHH-cC----ceeccCchhhcc--CCCEEEE
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKS-GVLPPDRI-CTAVHSNLKRRDAFES-IG----VKVLSDNNAVVE--YSDVVVF 77 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~-g~~~~~~v-~v~~~r~~~~~~~l~~-~g----~~~~~~~~~~~~--~aDiIil 77 (274)
+++++||||||+|.||..++..|.+. ++ ++ .++ +|++++++.+.+ .| ...+++..++++ ++|+|++
T Consensus 3 ~~~~~~vgiiG~G~ig~~~~~~l~~~~~~----~lv~v~-d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i 77 (362)
T 1ydw_A 3 TETQIRIGVMGCADIARKVSRAIHLAPNA----TISGVA-SRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYV 77 (362)
T ss_dssp ---CEEEEEESCCTTHHHHHHHHHHCTTE----EEEEEE-CSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEE
T ss_pred CCCceEEEEECchHHHHHHHHHHhhCCCc----EEEEEE-cCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEE
Confidence 34567999999999999999999875 33 55 466 999999887776 56 466778888875 5899999
Q ss_pred eeCcccHHHHHHHhccccCCCCEEEE
Q 024016 78 SVKPQVVKDVAMQIRPLLSRKKLLVS 103 (274)
Q Consensus 78 ~v~~~~~~~v~~~i~~~l~~~~~vis 103 (274)
|+|+....+++... +..|+-|+.
T Consensus 78 ~tp~~~h~~~~~~a---l~aGk~V~~ 100 (362)
T 1ydw_A 78 PLPTSLHVEWAIKA---AEKGKHILL 100 (362)
T ss_dssp CCCGGGHHHHHHHH---HTTTCEEEE
T ss_pred cCChHHHHHHHHHH---HHCCCeEEE
Confidence 99998877776554 345665553
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.69 E-value=1e-07 Score=86.03 Aligned_cols=110 Identities=20% Similarity=0.232 Sum_probs=74.0
Q ss_pred CCCeEEEEcccHH--HHHHHHHHHhC----CCCCCCcEEEEeCCCHHHHHHHHH--------c--C--ceeccCchhhcc
Q 024016 9 ESFILGFIGAGKM--AESIAKGVAKS----GVLPPDRICTAVHSNLKRRDAFES--------I--G--VKVLSDNNAVVE 70 (274)
Q Consensus 9 ~~~~IgiIG~G~m--G~~~a~~L~~~----g~~~~~~v~v~~~r~~~~~~~l~~--------~--g--~~~~~~~~~~~~ 70 (274)
+++||+|||+|.| |.+++..|.+. |+ +|.+| |+++++++.... . . ++.++|..++++
T Consensus 2 ~~~KIaVIGAGsVg~g~ala~~La~~~~l~~~----eV~L~-Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~ 76 (480)
T 1obb_A 2 PSVKIGIIGAGSAVFSLRLVSDLCKTPGLSGS----TVTLM-DIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVII 76 (480)
T ss_dssp CCCEEEEETTTCHHHHHHHHHHHHTCGGGTTC----EEEEE-CSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHT
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCcCCCC----EEEEE-eCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhC
Confidence 4679999999997 57778888754 66 99999 999987654322 1 1 334456667889
Q ss_pred CCCEEEEeeCcc------------------------------------------cHHHHHHHhccccCCCCEEEEecCCC
Q 024016 71 YSDVVVFSVKPQ------------------------------------------VVKDVAMQIRPLLSRKKLLVSVAAGV 108 (274)
Q Consensus 71 ~aDiIil~v~~~------------------------------------------~~~~v~~~i~~~l~~~~~vis~~~g~ 108 (274)
+||+||++++.. .+.++++.+..+ .|+..+|..++++
T Consensus 77 dAD~VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~-~P~A~ii~~TNPv 155 (480)
T 1obb_A 77 DADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKL-SPKAWYLQAANPI 155 (480)
T ss_dssp TCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHH-CTTCEEEECSSCH
T ss_pred CCCEEEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHH-CCCeEEEEeCCcH
Confidence 999999999642 233444455543 4777888887876
Q ss_pred CH--HHHHHhhCCCceEEE
Q 024016 109 KL--KDLQEWTGHSRFIRV 125 (274)
Q Consensus 109 ~~--~~l~~~~~~~~~~~~ 125 (274)
.. ..+.+ ++..++++.
T Consensus 156 di~t~~~~k-~p~~rviG~ 173 (480)
T 1obb_A 156 FEGTTLVTR-TVPIKAVGF 173 (480)
T ss_dssp HHHHHHHHH-HSCSEEEEE
T ss_pred HHHHHHHHH-CCCCcEEec
Confidence 53 23333 554566654
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.3e-07 Score=81.92 Aligned_cols=95 Identities=12% Similarity=0.177 Sum_probs=69.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--------c--C--ceeccCchhhccCCCEEEE
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------I--G--VKVLSDNNAVVEYSDVVVF 77 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~--------~--g--~~~~~~~~~~~~~aDiIil 77 (274)
.|||+|||+|.||.+++..|...|+. +|.+| |+++++++.... . . +..+++..+.+++||+||+
T Consensus 9 ~~kI~VIGaG~vG~~lA~~la~~g~~---~V~L~-D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~ 84 (331)
T 1pzg_A 9 RKKVAMIGSGMIGGTMGYLCALRELA---DVVLY-DVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIV 84 (331)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCC---EEEEE-CSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCC---eEEEE-ECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEE
Confidence 37999999999999999999998873 69999 999877655211 1 1 3334677668899999999
Q ss_pred ee--Cc--cc-----------------HHHHHHHhccccCCCCEEEEecCCCC
Q 024016 78 SV--KP--QV-----------------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 78 ~v--~~--~~-----------------~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
++ |. .. ++++.+++..+. |+.+++..+++..
T Consensus 85 a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNP~~ 136 (331)
T 1pzg_A 85 TAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPLD 136 (331)
T ss_dssp CCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHH
T ss_pred ccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCchH
Confidence 98 42 22 566777777664 7777776666544
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=7.7e-08 Score=86.38 Aligned_cols=87 Identities=21% Similarity=0.269 Sum_probs=66.3
Q ss_pred CCCCeEEEEcccHHHH-HHHHHHHhC-CCCCCCcE-EEEeCCCHHHHHHHHH-cCce-----eccCchhhcc--CCCEEE
Q 024016 8 AESFILGFIGAGKMAE-SIAKGVAKS-GVLPPDRI-CTAVHSNLKRRDAFES-IGVK-----VLSDNNAVVE--YSDVVV 76 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~-~~a~~L~~~-g~~~~~~v-~v~~~r~~~~~~~l~~-~g~~-----~~~~~~~~~~--~aDiIi 76 (274)
|+++||||||+|.||. .++..|.+. ++ ++ .++ ++++++++.+.+ .|+. .+++..++++ +.|+|+
T Consensus 81 ~~~irigiIG~G~~g~~~~~~~l~~~~~~----~lvav~-d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~ 155 (433)
T 1h6d_A 81 DRRFGYAIVGLGKYALNQILPGFAGCQHS----RIEALV-SGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVY 155 (433)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHTTTCSSE----EEEEEE-CSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEE
T ss_pred CCceEEEEECCcHHHHHHHHHHHhhCCCc----EEEEEE-cCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEE
Confidence 4567999999999997 899988765 33 55 467 999999888776 5653 5678888876 689999
Q ss_pred EeeCcccHHHHHHHhccccCCCCEEE
Q 024016 77 FSVKPQVVKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 77 l~v~~~~~~~v~~~i~~~l~~~~~vi 102 (274)
+|+|+....+++.... ..|+-|+
T Consensus 156 iatp~~~h~~~~~~al---~aGk~Vl 178 (433)
T 1h6d_A 156 IILPNSLHAEFAIRAF---KAGKHVM 178 (433)
T ss_dssp ECSCGGGHHHHHHHHH---HTTCEEE
T ss_pred EcCCchhHHHHHHHHH---HCCCcEE
Confidence 9999988777765543 3455444
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=2e-08 Score=86.57 Aligned_cols=96 Identities=11% Similarity=0.067 Sum_probs=64.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcE-EEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v-~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~ 86 (274)
|+++||+|||+|+||+.+++.|.+.+. .++ .++ ++++++ .+. .|+..+++..+++.++|+|++|+|++...+
T Consensus 1 M~~irV~IiG~G~mG~~~~~~l~~~~~---~elvav~-d~~~~~--~~~-~gv~~~~d~~~ll~~~DvViiatp~~~h~~ 73 (320)
T 1f06_A 1 MTNIRVAIVGYGNLGRSVEKLIAKQPD---MDLVGIF-SRRATL--DTK-TPVFDVADVDKHADDVDVLFLCMGSATDIP 73 (320)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHTTCSS---EEEEEEE-ESSSCC--SSS-SCEEEGGGGGGTTTTCSEEEECSCTTTHHH
T ss_pred CCCCEEEEEeecHHHHHHHHHHhcCCC---CEEEEEE-cCCHHH--hhc-CCCceeCCHHHHhcCCCEEEEcCCcHHHHH
Confidence 456799999999999999999987642 154 566 888655 222 577777777787778999999999885433
Q ss_pred HHHHhccccCCCCEEEEe-cCCCCHHHH
Q 024016 87 VAMQIRPLLSRKKLLVSV-AAGVKLKDL 113 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~-~~g~~~~~l 113 (274)
.+.. .+..|+.++.. ..+.+.+.+
T Consensus 74 ~~~~---al~aG~~Vv~ekp~~~~~~~~ 98 (320)
T 1f06_A 74 EQAP---KFAQFACTVDTYDNHRDIPRH 98 (320)
T ss_dssp HHHH---HHTTTSEEECCCCCGGGHHHH
T ss_pred HHHH---HHHCCCEEEECCCCcCCHHHH
Confidence 3332 23445555532 223444444
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=98.66 E-value=1.4e-07 Score=81.81 Aligned_cols=88 Identities=13% Similarity=0.197 Sum_probs=66.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcE-EEEeCCCHHHHHHHHH-cCc-eeccCchhhcc--CCCEEEEeeCcccH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFES-IGV-KVLSDNNAVVE--YSDVVVFSVKPQVV 84 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v-~v~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~--~aDiIil~v~~~~~ 84 (274)
++||||||+|.||..++..|.+.+.. ..++ .++ +|++++++.+.+ .|+ ..++|..++++ +.|+|++|+|+...
T Consensus 2 ~~rigiiG~G~ig~~~~~~l~~~~~~-~~~l~av~-d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H 79 (334)
T 3ohs_X 2 ALRWGIVSVGLISSDFTAVLQTLPRS-EHQVVAVA-ARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHPQH 79 (334)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSCTT-TEEEEEEE-CSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCGGGH
T ss_pred ccEEEEECchHHHHHHHHHHHhCCCC-CeEEEEEE-cCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHH
Confidence 36999999999999999999765420 0134 466 999999988876 677 57788888886 68999999999887
Q ss_pred HHHHHHhccccCCCCEEE
Q 024016 85 KDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vi 102 (274)
.++..... ..|+-|+
T Consensus 80 ~~~~~~al---~~GkhVl 94 (334)
T 3ohs_X 80 KAAVMLCL---AAGKAVL 94 (334)
T ss_dssp HHHHHHHH---HTTCEEE
T ss_pred HHHHHHHH---hcCCEEE
Confidence 77665543 3444444
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.9e-08 Score=85.16 Aligned_cols=87 Identities=16% Similarity=0.223 Sum_probs=64.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----cCc--eeccCchhhccCCCEEEEeeCc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IGV--KVLSDNNAVVEYSDVVVFSVKP 81 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-----~g~--~~~~~~~~~~~~aDiIil~v~~ 81 (274)
+.++|+|||+|.||..+++.|.+..- ..+|.+| ||+ +++.+.+ .|+ ..+ +..++++++|+||+|||.
T Consensus 120 ~~~~v~iIGaG~~a~~~~~al~~~~~--~~~V~v~-~r~--~a~~la~~l~~~~g~~~~~~-~~~eav~~aDIVi~aT~s 193 (313)
T 3hdj_A 120 RSSVLGLFGAGTQGAEHAAQLSARFA--LEAILVH-DPY--ASPEILERIGRRCGVPARMA-APADIAAQADIVVTATRS 193 (313)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSC--CCEEEEE-CTT--CCHHHHHHHHHHHTSCEEEC-CHHHHHHHCSEEEECCCC
T ss_pred CCcEEEEECccHHHHHHHHHHHHhCC--CcEEEEE-CCc--HHHHHHHHHHHhcCCeEEEe-CHHHHHhhCCEEEEccCC
Confidence 45799999999999999999987421 2389999 999 5555543 365 345 888999999999999986
Q ss_pred ccHHHHHHHhccccCCCCEEEEec
Q 024016 82 QVVKDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 82 ~~~~~v~~~i~~~l~~~~~vis~~ 105 (274)
.. .++. .+.+++|+.|+++.
T Consensus 194 ~~--pvl~--~~~l~~G~~V~~vG 213 (313)
T 3hdj_A 194 TT--PLFA--GQALRAGAFVGAIG 213 (313)
T ss_dssp SS--CSSC--GGGCCTTCEEEECC
T ss_pred CC--cccC--HHHcCCCcEEEECC
Confidence 52 2222 24578998877663
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.65 E-value=8.9e-08 Score=86.45 Aligned_cols=114 Identities=12% Similarity=0.202 Sum_probs=77.0
Q ss_pred CCCeEEEEcccHH-HHHHHHHHHhC--CCCCCCcEEEEeCCCHHHHHHHHH----------cC--ceeccCchhhccCCC
Q 024016 9 ESFILGFIGAGKM-AESIAKGVAKS--GVLPPDRICTAVHSNLKRRDAFES----------IG--VKVLSDNNAVVEYSD 73 (274)
Q Consensus 9 ~~~~IgiIG~G~m-G~~~a~~L~~~--g~~~~~~v~v~~~r~~~~~~~l~~----------~g--~~~~~~~~~~~~~aD 73 (274)
+.+||+|||+|.+ |.+++..|++. +. +..+|.+| |+++++++...+ .. +...+|..+++++||
T Consensus 27 ~~~KIaVIGaGsv~~~ala~~L~~~~~~l-~~~eV~L~-Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD 104 (472)
T 1u8x_X 27 KSFSIVIAGGGSTFTPGIVLMLLDHLEEF-PIRKLKLY-DNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVD 104 (472)
T ss_dssp CCEEEEEECTTSSSHHHHHHHHHHTTTTS-CEEEEEEE-CSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCCCC-CCCEEEEE-eCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCC
Confidence 3469999999998 66688888877 32 12289999 999987654321 12 233456668889999
Q ss_pred EEEEeeCccc------------------------------------HHHHHHHhccccCCCCEEEEecCCCCH--HHHHH
Q 024016 74 VVVFSVKPQV------------------------------------VKDVAMQIRPLLSRKKLLVSVAAGVKL--KDLQE 115 (274)
Q Consensus 74 iIil~v~~~~------------------------------------~~~v~~~i~~~l~~~~~vis~~~g~~~--~~l~~ 115 (274)
+||++++... +.++++.+..+ .|+..++..++++.. +.+.+
T Consensus 105 ~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~-~P~A~ii~~TNPvdi~T~~~~k 183 (472)
T 1u8x_X 105 FVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKY-SPDAWMLNYSNPAAIVAEATRR 183 (472)
T ss_dssp EEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSCHHHHHHHHHH
T ss_pred EEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHH-CCCeEEEEeCCcHHHHHHHHHH
Confidence 9999998632 33444555544 588888888887653 34445
Q ss_pred hhCCCceEEE
Q 024016 116 WTGHSRFIRV 125 (274)
Q Consensus 116 ~~~~~~~~~~ 125 (274)
..|..++++.
T Consensus 184 ~~p~~rViG~ 193 (472)
T 1u8x_X 184 LRPNSKILNI 193 (472)
T ss_dssp HSTTCCEEEC
T ss_pred hCCCCCEEEe
Confidence 4554466654
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=98.64 E-value=1e-07 Score=82.67 Aligned_cols=87 Identities=15% Similarity=0.227 Sum_probs=65.9
Q ss_pred CCCCeEEEEcccHHHH-HHHHHHHhCCCCCCCcE-EEEeCCCHHHHHHHHH-c-CceeccCchhhcc--CCCEEEEeeCc
Q 024016 8 AESFILGFIGAGKMAE-SIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFES-I-GVKVLSDNNAVVE--YSDVVVFSVKP 81 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~-~~a~~L~~~g~~~~~~v-~v~~~r~~~~~~~l~~-~-g~~~~~~~~~~~~--~aDiIil~v~~ 81 (274)
|+++||||||+|++|. .++..|...++ ++ .++ ++++++++.+.+ . ++..++|..++++ +.|+|++|+|+
T Consensus 2 M~~~rvgiiG~G~~~~~~~~~~l~~~~~----~lvav~-d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~ 76 (336)
T 2p2s_A 2 MKKIRFAAIGLAHNHIYDMCQQLIDAGA----ELAGVF-ESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIP 76 (336)
T ss_dssp --CCEEEEECCSSTHHHHHHHHHHHTTC----EEEEEE-CSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCG
T ss_pred CCccEEEEECCChHHHHHhhhhhcCCCc----EEEEEe-CCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCCh
Confidence 5678999999999996 67888876676 76 566 999999888876 4 6677788888876 68999999998
Q ss_pred ccHHHHHHHhccccCCCCEEE
Q 024016 82 QVVKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 82 ~~~~~v~~~i~~~l~~~~~vi 102 (274)
....++..... ..|+-|+
T Consensus 77 ~~h~~~~~~al---~aGkhVl 94 (336)
T 2p2s_A 77 CDRAELALRTL---DAGKDFF 94 (336)
T ss_dssp GGHHHHHHHHH---HTTCEEE
T ss_pred hhHHHHHHHHH---HCCCcEE
Confidence 87766665433 3455444
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=98.63 E-value=5.6e-08 Score=85.15 Aligned_cols=87 Identities=21% Similarity=0.334 Sum_probs=66.7
Q ss_pred CCCCeEEEEcccHHHHH-HHHHHHhC-CCCCCCcEE-EEeCCCHHHHHHHHH-c-CceeccCchhhcc--CCCEEEEeeC
Q 024016 8 AESFILGFIGAGKMAES-IAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES-I-GVKVLSDNNAVVE--YSDVVVFSVK 80 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~-~a~~L~~~-g~~~~~~v~-v~~~r~~~~~~~l~~-~-g~~~~~~~~~~~~--~aDiIil~v~ 80 (274)
|+++||||||+|.||.. ++..|.+. +. ++. ++ +|++++++.+.+ . +...++|..++++ +.|+|++|+|
T Consensus 3 M~~~rigiIG~G~~g~~~~~~~l~~~~~~----~l~av~-d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp 77 (359)
T 3m2t_A 3 LSLIKVGLVGIGAQMQENLLPSLLQMQDI----RIVAAC-DSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGP 77 (359)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHHHTCTTE----EEEEEE-CSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSC
T ss_pred CCcceEEEECCCHHHHHHHHHHHHhCCCc----EEEEEE-cCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCC
Confidence 45679999999999985 88888775 44 665 66 999999988877 3 5677888888887 4599999999
Q ss_pred cccHHHHHHHhccccCCCCEEE
Q 024016 81 PQVVKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 81 ~~~~~~v~~~i~~~l~~~~~vi 102 (274)
+....+++.... ..|+-|+
T Consensus 78 ~~~H~~~~~~al---~aGkhVl 96 (359)
T 3m2t_A 78 PQLHFEMGLLAM---SKGVNVF 96 (359)
T ss_dssp HHHHHHHHHHHH---HTTCEEE
T ss_pred cHHHHHHHHHHH---HCCCeEE
Confidence 887777665543 3455444
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=3.1e-07 Score=79.22 Aligned_cols=105 Identities=15% Similarity=0.161 Sum_probs=70.5
Q ss_pred CCCCCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH---c------CceeccCchhhccC
Q 024016 1 MDAFPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES---I------GVKVLSDNNAVVEY 71 (274)
Q Consensus 1 ~~~~~~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~---~------g~~~~~~~~~~~~~ 71 (274)
|.+++..+ .+||+|||+|.+|.+++..|...+++ .+|.++ |+++++++.... . .+++..+..+.+++
T Consensus 1 ~~~~~~~~-~~KI~IiGaG~vG~~la~~l~~~~~~--~el~L~-Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~ 76 (326)
T 2zqz_A 1 MASITDKD-HQKVILVGDGAVGSSYAYAMVLQGIA--QEIGIV-DIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKD 76 (326)
T ss_dssp -----CCC-CCEEEEECCSHHHHHHHHHHHHHTCC--SEEEEE-CSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGG
T ss_pred CCccccCC-CCEEEEECCCHHHHHHHHHHHcCCCC--CEEEEE-eCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCC
Confidence 55666663 47999999999999999999988863 379999 999887754222 1 23344456778999
Q ss_pred CCEEEEeeCcc----------------cHHHHHHHhccccCCCCEEEEecCCCCH
Q 024016 72 SDVVVFSVKPQ----------------VVKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (274)
Q Consensus 72 aDiIil~v~~~----------------~~~~v~~~i~~~l~~~~~vis~~~g~~~ 110 (274)
||+||++.+.. .++++.+.+..+ .|+..++..++++..
T Consensus 77 aDvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNPv~~ 130 (326)
T 2zqz_A 77 ADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDS-GFNGIFLVAANPVDI 130 (326)
T ss_dssp CSEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHH-TCCSEEEECSSSHHH
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeCCcHHH
Confidence 99999998421 133444445544 477777777776553
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.1e-07 Score=85.06 Aligned_cols=114 Identities=15% Similarity=0.248 Sum_probs=78.0
Q ss_pred CCCCeEEEEcccHH--HHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc---------CceeccCchhhccCCCEEE
Q 024016 8 AESFILGFIGAGKM--AESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI---------GVKVLSDNNAVVEYSDVVV 76 (274)
Q Consensus 8 ~~~~~IgiIG~G~m--G~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~---------g~~~~~~~~~~~~~aDiIi 76 (274)
|+.+||+|||+|.| |..++..|+....... +|.+| |+++++++..... .++.++|..+++++||+||
T Consensus 3 m~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~-Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfVI 80 (450)
T 3fef_A 3 LDQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALY-DLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVI 80 (450)
T ss_dssp CCCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEE-CSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEEE
T ss_pred CCCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEE-eCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEEE
Confidence 45679999999996 6899998886432122 89999 9999887655431 2455677788999999999
Q ss_pred EeeCccc--------------------------------------HHHHHHHhccccCCCCEEEEecCCCCH--HHHHHh
Q 024016 77 FSVKPQV--------------------------------------VKDVAMQIRPLLSRKKLLVSVAAGVKL--KDLQEW 116 (274)
Q Consensus 77 l~v~~~~--------------------------------------~~~v~~~i~~~l~~~~~vis~~~g~~~--~~l~~~ 116 (274)
+++++.. +.++++.+... .|+..+|..++++.. ..+.+.
T Consensus 81 ~airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~-~p~a~~i~~tNPvdi~t~~~~k~ 159 (450)
T 3fef_A 81 ISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDY-APESWVINYTNPMSVCTRVLYKV 159 (450)
T ss_dssp ECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHHHHHHHHHH
T ss_pred eccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHH-CCCeEEEEecCchHHHHHHHHHH
Confidence 9997531 33344444443 477888888887653 334444
Q ss_pred hCCCceEE
Q 024016 117 TGHSRFIR 124 (274)
Q Consensus 117 ~~~~~~~~ 124 (274)
+|..+++.
T Consensus 160 ~p~~rviG 167 (450)
T 3fef_A 160 FPGIKAIG 167 (450)
T ss_dssp CTTCEEEE
T ss_pred CCCCCEEE
Confidence 55445554
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.62 E-value=4.2e-08 Score=86.42 Aligned_cols=91 Identities=12% Similarity=0.187 Sum_probs=69.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceecc--------------------------
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLS-------------------------- 63 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~-------------------------- 63 (274)
..||+|||+|.+|..+++.+...|. +|++| |+++++.+.+.+.|.+...
T Consensus 190 ~~kV~ViG~G~iG~~aa~~a~~lGa----~V~v~-D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~ 264 (405)
T 4dio_A 190 AAKIFVMGAGVAGLQAIATARRLGA----VVSAT-DVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVK 264 (405)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSTTHHHHHHHTTCEECCCCC-----------------CHHHHH
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhh
Confidence 4699999999999999999999998 99999 9999998888877764321
Q ss_pred ---CchhhccCCCEEEEee--CcccHHHH-HHHhccccCCCCEEEEec
Q 024016 64 ---DNNAVVEYSDVVVFSV--KPQVVKDV-AMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 64 ---~~~~~~~~aDiIil~v--~~~~~~~v-~~~i~~~l~~~~~vis~~ 105 (274)
+..+.++++|+||.|+ |......+ -++....+++|.+||+++
T Consensus 265 ~~~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA 312 (405)
T 4dio_A 265 QAALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLA 312 (405)
T ss_dssp HHHHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETT
T ss_pred hHhHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEe
Confidence 3456678999999986 32221111 134555678999999875
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.62 E-value=2.7e-07 Score=70.65 Aligned_cols=96 Identities=8% Similarity=0.030 Sum_probs=65.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC-HHHHHHHHH---cCceec-cC---c---hhh-ccCCCEE
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN-LKRRDAFES---IGVKVL-SD---N---NAV-VEYSDVV 75 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~-~~~~~~l~~---~g~~~~-~~---~---~~~-~~~aDiI 75 (274)
|...+|.|+|+|.+|..+++.|.+.|+ +|++. +++ +++.+.+.. .|+.+. .+ . .++ ++++|+|
T Consensus 1 ~~~~~vlI~G~G~vG~~la~~L~~~g~----~V~vi-d~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~v 75 (153)
T 1id1_A 1 HRKDHFIVCGHSILAINTILQLNQRGQ----NVTVI-SNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAI 75 (153)
T ss_dssp CCCSCEEEECCSHHHHHHHHHHHHTTC----CEEEE-ECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEE
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCC----CEEEE-ECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEE
Confidence 345689999999999999999999999 99999 997 565555543 355432 11 1 222 6789999
Q ss_pred EEeeCcccHHHHHHHhccccCCCCEEEEecCCC
Q 024016 76 VFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGV 108 (274)
Q Consensus 76 il~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~ 108 (274)
|++++++.....+......+.+...++...+..
T Consensus 76 i~~~~~d~~n~~~~~~a~~~~~~~~ii~~~~~~ 108 (153)
T 1id1_A 76 LALSDNDADNAFVVLSAKDMSSDVKTVLAVSDS 108 (153)
T ss_dssp EECSSCHHHHHHHHHHHHHHTSSSCEEEECSSG
T ss_pred EEecCChHHHHHHHHHHHHHCCCCEEEEEECCH
Confidence 999988765555544444443444455444443
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.61 E-value=8.2e-08 Score=82.17 Aligned_cols=85 Identities=15% Similarity=0.169 Sum_probs=56.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC-CCCCCCcEE-EEeCCCHHHHHHHHHcCce--eccCchhhccCCCEEEEeeCccc
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFESIGVK--VLSDNNAVVEYSDVVVFSVKPQV 83 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~-g~~~~~~v~-v~~~r~~~~~~~l~~~g~~--~~~~~~~~~~~aDiIil~v~~~~ 83 (274)
|+++||||||+|+||..++..|.+. ++ ++. ++ +|++++++. .|+. ..++..+. .++|+||+|+|+..
T Consensus 7 M~~irv~IIG~G~iG~~~~~~l~~~~~~----elvav~-d~~~~~~~~---~g~~~~~~~~l~~~-~~~DvViiatp~~~ 77 (304)
T 3bio_A 7 DKKIRAAIVGYGNIGRYALQALREAPDF----EIAGIV-RRNPAEVPF---ELQPFRVVSDIEQL-ESVDVALVCSPSRE 77 (304)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHCTTE----EEEEEE-CC----------CCTTSCEESSGGGS-SSCCEEEECSCHHH
T ss_pred CCCCEEEEECChHHHHHHHHHHhcCCCC----EEEEEE-cCCHHHHHH---cCCCcCCHHHHHhC-CCCCEEEECCCchh
Confidence 3467999999999999999999874 44 666 67 999987664 5543 23344443 68999999999888
Q ss_pred HHHHHHHhccccCCCCEEEEe
Q 024016 84 VKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~ 104 (274)
..+...... ..|+.+++.
T Consensus 78 h~~~~~~al---~aG~~Vi~e 95 (304)
T 3bio_A 78 VERTALEIL---KKGICTADS 95 (304)
T ss_dssp HHHHHHHHH---TTTCEEEEC
T ss_pred hHHHHHHHH---HcCCeEEEC
Confidence 777665543 456667753
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.2e-07 Score=85.82 Aligned_cols=90 Identities=12% Similarity=0.138 Sum_probs=71.8
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCccc-HHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-VKD 86 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~-~~~ 86 (274)
...++|+|||+|.||..+++.+...|. +|+++ ++++.+.+...+.|+.. .+..++++++|+||.|++... +.
T Consensus 272 l~GktV~IiG~G~IG~~~A~~lka~Ga----~Viv~-d~~~~~~~~A~~~Ga~~-~~l~e~l~~aDvVi~atgt~~~i~- 344 (494)
T 3ce6_A 272 IGGKKVLICGYGDVGKGCAEAMKGQGA----RVSVT-EIDPINALQAMMEGFDV-VTVEEAIGDADIVVTATGNKDIIM- 344 (494)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTTCEE-CCHHHHGGGCSEEEECSSSSCSBC-
T ss_pred CCcCEEEEEccCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHcCCEE-ecHHHHHhCCCEEEECCCCHHHHH-
Confidence 345799999999999999999999998 99999 99999887777788875 356778889999999997544 32
Q ss_pred HHHHhccccCCCCEEEEecC
Q 024016 87 VAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~~ 106 (274)
.+....++++.+++++..
T Consensus 345 --~~~l~~mk~ggilvnvG~ 362 (494)
T 3ce6_A 345 --LEHIKAMKDHAILGNIGH 362 (494)
T ss_dssp --HHHHHHSCTTCEEEECSS
T ss_pred --HHHHHhcCCCcEEEEeCC
Confidence 123334678888887754
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=2.2e-07 Score=80.04 Aligned_cols=95 Identities=11% Similarity=0.117 Sum_probs=68.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--------c--C--ceeccCchhhccCCCEEE
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------I--G--VKVLSDNNAVVEYSDVVV 76 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~--------~--g--~~~~~~~~~~~~~aDiIi 76 (274)
.++||+|||+|.||.+++..|...|+. +|.++ |+++++++.... . . ++.+++. +.+++||+||
T Consensus 3 ~~~kI~VIGaG~vG~~ia~~la~~g~~---~v~L~-Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi 77 (322)
T 1t2d_A 3 PKAKIVLVGSGMIGGVMATLIVQKNLG---DVVLF-DIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVI 77 (322)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCC---EEEEE-CSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCC---eEEEE-eCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEE
Confidence 357999999999999999999999873 59999 999877653221 1 2 2333555 7789999999
Q ss_pred Eee--Cc--c-----------------cHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 77 FSV--KP--Q-----------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 77 l~v--~~--~-----------------~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
+++ |. . .++++.+++..+. |+.+++..+++..
T Consensus 78 ~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNP~~ 130 (322)
T 1t2d_A 78 VTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNPVD 130 (322)
T ss_dssp ECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSHH
T ss_pred EeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCChH
Confidence 998 31 1 2556666676664 7777776666544
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=3.7e-07 Score=78.48 Aligned_cols=97 Identities=15% Similarity=0.167 Sum_probs=67.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH----H-c-----CceeccCchhhccCCCEEEEe
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S-I-----GVKVLSDNNAVVEYSDVVVFS 78 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~----~-~-----g~~~~~~~~~~~~~aDiIil~ 78 (274)
+.+||+|||+|.||.+++..|...|.. .+|.++ |+++++.+... . . ..++..+..+.+++||+||++
T Consensus 5 ~~~kI~IIGaG~vG~sla~~l~~~~~~--~ev~l~-Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia 81 (316)
T 1ldn_A 5 GGARVVVIGAGFVGASYVFALMNQGIA--DEIVLI-DANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVIC 81 (316)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCC--SEEEEE-CSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEEC
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCC--CEEEEE-eCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEc
Confidence 357999999999999999999888753 379999 99987654322 1 1 233444556778999999999
Q ss_pred eCcc----------------cHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 79 VKPQ----------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 79 v~~~----------------~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
.+.. .+.++.+.+..+. |+..++-.++++.
T Consensus 82 ~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~~iv~tNPv~ 127 (316)
T 1ldn_A 82 AGANQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFLVATNPVD 127 (316)
T ss_dssp CSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEECSSSHH
T ss_pred CCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHC-CCCEEEEeCCchH
Confidence 7532 2344555555553 6666666666554
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=6e-07 Score=77.19 Aligned_cols=98 Identities=14% Similarity=0.203 Sum_probs=68.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH----HH------cCceeccCchhhccCCCEEEE
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF----ES------IGVKVLSDNNAVVEYSDVVVF 77 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l----~~------~g~~~~~~~~~~~~~aDiIil 77 (274)
|+.+||+|||+|.+|.+++..|...|++ .+|.++ |+++++++.. .. ..+++..+..+++++||+||+
T Consensus 4 m~~~KI~IIGaG~vG~~la~~l~~~~~~--~ei~L~-Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi 80 (317)
T 3d0o_A 4 FKGNKVVLIGNGAVGSSYAFSLVNQSIV--DELVII-DLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVI 80 (317)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHCSC--SEEEEE-CSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCC--CEEEEE-eCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEE
Confidence 3457999999999999999999988853 389999 9998766432 11 123444456778999999999
Q ss_pred eeC-cc---------------cHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 78 SVK-PQ---------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 78 ~v~-~~---------------~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
+.+ |. .++++.+.+..+ .|+..++..++++.
T Consensus 81 ~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPv~ 127 (317)
T 3d0o_A 81 CAGAAQKPGETRLDLVSKNLKIFKSIVGEVMAS-KFDGIFLVATNPVD 127 (317)
T ss_dssp CCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSHH
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCcHH
Confidence 984 21 234444555555 57777777766554
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.8e-07 Score=80.73 Aligned_cols=90 Identities=9% Similarity=0.141 Sum_probs=65.1
Q ss_pred CCCCCCeEEEEcccHHHH-HHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cC-ceeccCchhhccC--CCEEEEeeC
Q 024016 6 IPAESFILGFIGAGKMAE-SIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG-VKVLSDNNAVVEY--SDVVVFSVK 80 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~-~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g-~~~~~~~~~~~~~--aDiIil~v~ 80 (274)
.+|+++||||||+|.+|. .++..+...+. ++...+++++++++.+.+ .| ...++|..+++++ .|+|++|+|
T Consensus 22 ~Mm~~irvgiiG~G~~~~~~~~~~~~~~~~----~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp 97 (361)
T 3u3x_A 22 SMMDELRFAAVGLNHNHIYGQVNCLLRAGA----RLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAV 97 (361)
T ss_dssp ----CCEEEEECCCSTTHHHHHHHHHHTTC----EEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCC
T ss_pred hhccCcEEEEECcCHHHHHHHHHHhhcCCc----EEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCC
Confidence 346678999999999994 56777766676 765333999999988876 55 5677888888874 899999999
Q ss_pred cccHHHHHHHhccccCCCCEEE
Q 024016 81 PQVVKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 81 ~~~~~~v~~~i~~~l~~~~~vi 102 (274)
+....++..... ..|+-|+
T Consensus 98 ~~~H~~~~~~al---~aGkhVl 116 (361)
T 3u3x_A 98 SSERAELAIRAM---QHGKDVL 116 (361)
T ss_dssp HHHHHHHHHHHH---HTTCEEE
T ss_pred hHHHHHHHHHHH---HCCCeEE
Confidence 887666665443 3444444
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=5.4e-07 Score=77.52 Aligned_cols=113 Identities=17% Similarity=0.206 Sum_probs=71.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH----HHHc-----CceeccCchhhccCCCEEEEee
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FESI-----GVKVLSDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~----l~~~-----g~~~~~~~~~~~~~aDiIil~v 79 (274)
+.+||+|||+|.+|.+++..|...|+. .+|.++ |+++++++. +... .+++..+..+.+++||+||++.
T Consensus 6 ~~~KI~IiGaG~vG~~~a~~l~~~~~~--~ev~L~-Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~ 82 (318)
T 1y6j_A 6 SRSKVAIIGAGFVGASAAFTMALRQTA--NELVLI-DVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTA 82 (318)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHHTTCS--SEEEEE-CCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCC--CEEEEE-eCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcC
Confidence 347999999999999999999998863 379999 999876542 2221 2233334567789999999998
Q ss_pred Cccc----------------HHHHHHHhccccCCCCEEEEecCCCCH--HHHHHh--hCCCceEEE
Q 024016 80 KPQV----------------VKDVAMQIRPLLSRKKLLVSVAAGVKL--KDLQEW--TGHSRFIRV 125 (274)
Q Consensus 80 ~~~~----------------~~~v~~~i~~~l~~~~~vis~~~g~~~--~~l~~~--~~~~~~~~~ 125 (274)
+... ++++.+.+..+ .|+.+++..++++.. ..+.+. +|..+++..
T Consensus 83 g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPv~~~~~~~~k~s~~p~~rviG~ 147 (318)
T 1y6j_A 83 GANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVVSNPVDIITYMIQKWSGLPVGKVIGS 147 (318)
T ss_dssp CC------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEECSSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred CCCCCCCcCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCcHHHHHHHHHHHcCCCHHHEecc
Confidence 5221 45566666665 577777766665443 223333 344466654
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.7e-07 Score=81.62 Aligned_cols=81 Identities=10% Similarity=0.211 Sum_probs=61.5
Q ss_pred CCCeEEEEcccHHHHH-HHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCc-eeccCchhhcc--CCCEEEEeeCccc
Q 024016 9 ESFILGFIGAGKMAES-IAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGV-KVLSDNNAVVE--YSDVVVFSVKPQV 83 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~-~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~--~aDiIil~v~~~~ 83 (274)
+++||||||+|.||.. ++..+.+... .+|...++|++++++++++ .|+ .+++|..++++ +.|+|++|+|+..
T Consensus 22 ~mirigiIG~G~ig~~~~~~~~~~~~~---~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP~~~ 98 (350)
T 4had_A 22 SMLRFGIISTAKIGRDNVVPAIQDAEN---CVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPTSQ 98 (350)
T ss_dssp CCEEEEEESCCHHHHHTHHHHHHHCSS---EEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSCGGG
T ss_pred CccEEEEEcChHHHHHHHHHHHHhCCC---eEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCCCch
Confidence 4579999999999975 5666766432 1665333999999988877 776 57788888875 5799999999988
Q ss_pred HHHHHHHhc
Q 024016 84 VKDVAMQIR 92 (274)
Q Consensus 84 ~~~v~~~i~ 92 (274)
-.++.....
T Consensus 99 H~~~~~~al 107 (350)
T 4had_A 99 HIEWSIKAA 107 (350)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 766665443
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=98.57 E-value=1.8e-07 Score=85.02 Aligned_cols=79 Identities=18% Similarity=0.205 Sum_probs=63.6
Q ss_pred CCCCeEEEEcc----cHHHHHHHHHHHhC--CCCCCCcEE-EEeCCCHHHHHHHHH-cCc---eeccCchhhcc--CCCE
Q 024016 8 AESFILGFIGA----GKMAESIAKGVAKS--GVLPPDRIC-TAVHSNLKRRDAFES-IGV---KVLSDNNAVVE--YSDV 74 (274)
Q Consensus 8 ~~~~~IgiIG~----G~mG~~~a~~L~~~--g~~~~~~v~-v~~~r~~~~~~~l~~-~g~---~~~~~~~~~~~--~aDi 74 (274)
|+++||||||+ |.||..++..|.+. ++ +|+ ++ ++++++++.+.+ .|+ ..+++..++++ +.|+
T Consensus 37 m~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~----~lvav~-d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~ 111 (479)
T 2nvw_A 37 SRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQF----QIVALY-NPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDM 111 (479)
T ss_dssp GCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTE----EEEEEE-CSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSE
T ss_pred CCcCEEEEEcccCCCCHHHHHHHHHHHhcCCCe----EEEEEE-eCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCE
Confidence 56689999999 99999999999885 44 664 66 999999988876 565 37788888875 6899
Q ss_pred EEEeeCcccHHHHHHHh
Q 024016 75 VVFSVKPQVVKDVAMQI 91 (274)
Q Consensus 75 Iil~v~~~~~~~v~~~i 91 (274)
|++|+|+....+++...
T Consensus 112 V~I~tp~~~H~~~~~~a 128 (479)
T 2nvw_A 112 IVVSVKVPEHYEVVKNI 128 (479)
T ss_dssp EEECSCHHHHHHHHHHH
T ss_pred EEEcCCcHHHHHHHHHH
Confidence 99999988766665543
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=98.56 E-value=4.5e-08 Score=73.98 Aligned_cols=96 Identities=14% Similarity=0.211 Sum_probs=70.8
Q ss_pred CCeEEEEcc----cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH-HHHHHHcCceeccCchhhccCCCEEEEeeCcccH
Q 024016 10 SFILGFIGA----GKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-RDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVV 84 (274)
Q Consensus 10 ~~~IgiIG~----G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~ 84 (274)
..+|+|||+ |++|..++++|.+.|| + +| ++++.+ .+.+ .|..++.+..++.+..|++++++|++.+
T Consensus 13 p~~vaVvGas~~~g~~G~~~~~~l~~~G~----~--v~-~vnp~~~~~~i--~G~~~~~sl~el~~~vDlavi~vp~~~~ 83 (140)
T 1iuk_A 13 AKTIAVLGAHKDPSRPAHYVPRYLREQGY----R--VL-PVNPRFQGEEL--FGEEAVASLLDLKEPVDILDVFRPPSAL 83 (140)
T ss_dssp CCEEEEETCCSSTTSHHHHHHHHHHHTTC----E--EE-EECGGGTTSEE--TTEECBSSGGGCCSCCSEEEECSCHHHH
T ss_pred CCEEEEECCCCCCCChHHHHHHHHHHCCC----E--EE-EeCCCcccCcC--CCEEecCCHHHCCCCCCEEEEEeCHHHH
Confidence 468999999 8999999999999998 7 55 666664 2111 5888888888888889999999999988
Q ss_pred HHHHHHhccccCCCCEEEEecCCCCHHHHHHhh
Q 024016 85 KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWT 117 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~ 117 (274)
.++++++...- .+.+++. .|...+++.+..
T Consensus 84 ~~v~~~~~~~g-i~~i~~~--~g~~~~~~~~~a 113 (140)
T 1iuk_A 84 MDHLPEVLALR-PGLVWLQ--SGIRHPEFEKAL 113 (140)
T ss_dssp TTTHHHHHHHC-CSCEEEC--TTCCCHHHHHHH
T ss_pred HHHHHHHHHcC-CCEEEEc--CCcCHHHHHHHH
Confidence 88887766532 3345443 444445554444
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=5.7e-07 Score=77.46 Aligned_cols=97 Identities=16% Similarity=0.217 Sum_probs=69.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH----HHH------cCceeccCchhhccCCCEEEEe
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FES------IGVKVLSDNNAVVEYSDVVVFS 78 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~----l~~------~g~~~~~~~~~~~~~aDiIil~ 78 (274)
+.+||+|||+|.||.+++..|...|+. .+|.++ |+++++++. |.. .++++.++..+.+++||+||++
T Consensus 4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~--~~l~l~-D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ 80 (326)
T 3pqe_A 4 HVNKVALIGAGFVGSSYAFALINQGIT--DELVVI-DVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCIC 80 (326)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHTCC--SEEEEE-CSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCC--ceEEEE-ecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEe
Confidence 457999999999999999999998863 389999 999987664 433 1334445556788999999999
Q ss_pred eC----ccc------------HHHHHHHhccccCCCCEEEEecCCCC
Q 024016 79 VK----PQV------------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 79 v~----~~~------------~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
.. |.. ++++.+.+..+ .|+..++..++++.
T Consensus 81 ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~-~p~a~vlvvtNPvd 126 (326)
T 3pqe_A 81 AGANQKPGETRLELVEKNLKIFKGIVSEVMAS-GFDGIFLVATNPVD 126 (326)
T ss_dssp CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSHH
T ss_pred cccCCCCCccHHHHHHHHHHHHHHHHHHHHHh-cCCeEEEEcCChHH
Confidence 73 211 23333445444 57778887777654
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=4.4e-07 Score=77.09 Aligned_cols=94 Identities=21% Similarity=0.281 Sum_probs=66.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH----HHH----c--Cce--eccCchhhccCCCEEEEe
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FES----I--GVK--VLSDNNAVVEYSDVVVFS 78 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~----l~~----~--g~~--~~~~~~~~~~~aDiIil~ 78 (274)
|||+|||+|.||.+++..|...|+. .+|.+| |+++++++. +.. . ..+ ..++ .+++++||+||++
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~~~~--~~v~L~-D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVVia 76 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLNLDV--DEIALV-DIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVT 76 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCC--SEEEEE-CSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCC--CeEEEE-ECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEEC
Confidence 6999999999999999999998873 379999 999987641 221 1 222 3345 7889999999999
Q ss_pred eC----cc------------cHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 79 VK----PQ------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 79 v~----~~------------~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
.. |. .++++.+.+..+ .|+.+++..++++.
T Consensus 77 ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~iivvsNPvd 122 (294)
T 1oju_A 77 AGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVTNPMD 122 (294)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECSSSHH
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeCCcch
Confidence 73 21 123344455555 67788887777654
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.5e-07 Score=81.36 Aligned_cols=108 Identities=18% Similarity=0.266 Sum_probs=78.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccHHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVKD 86 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~~ 86 (274)
...+++||||+|++|+.+++.+..-|. +|.+| +|.+.. ...+.++.. .+..+++++||+|.+++| ....+.
T Consensus 139 l~g~tvGIiG~G~IG~~va~~~~~fg~----~v~~~-d~~~~~--~~~~~~~~~-~~l~ell~~sDivslh~Plt~~T~~ 210 (334)
T 3kb6_A 139 LNRLTLGVIGTGRIGSRVAMYGLAFGM----KVLCY-DVVKRE--DLKEKGCVY-TSLDELLKESDVISLHVPYTKETHH 210 (334)
T ss_dssp GGGSEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCH--HHHHTTCEE-CCHHHHHHHCSEEEECCCCCTTTTT
T ss_pred ecCcEEEEECcchHHHHHHHhhcccCc----eeeec-CCccch--hhhhcCcee-cCHHHHHhhCCEEEEcCCCChhhcc
Confidence 345799999999999999999999898 99999 887542 333456654 478899999999999998 333444
Q ss_pred HH-HHhccccCCCCEEEEecCC--CCHHHHHHhhCCCceE
Q 024016 87 VA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTGHSRFI 123 (274)
Q Consensus 87 v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~~~~~~ 123 (274)
++ .+....++++.++|.++=| +..+.|.+.+...++.
T Consensus 211 li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~ 250 (334)
T 3kb6_A 211 MINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFS 250 (334)
T ss_dssp CBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEE
T ss_pred CcCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCCce
Confidence 44 2334457899999988744 3456666666533443
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=2.1e-07 Score=81.74 Aligned_cols=105 Identities=13% Similarity=0.274 Sum_probs=71.2
Q ss_pred CCCCCCCCeEEEEcccHHHHHHHHHHHhC--CCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeC
Q 024016 4 FPIPAESFILGFIGAGKMAESIAKGVAKS--GVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 4 ~~~~~~~~~IgiIG~G~mG~~~a~~L~~~--g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~ 80 (274)
||....+.||+|||+| +|...+..+.+. ++ ++...++|++++++.+.+ .|+..++|.++++++.|++++|+|
T Consensus 1 M~~~~~~~rv~VvG~G-~g~~h~~a~~~~~~~~----elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~~~~D~v~i~~p 75 (372)
T 4gmf_A 1 MPSASPKQRVLIVGAK-FGEMYLNAFMQPPEGL----ELVGLLAQGSARSRELAHAFGIPLYTSPEQITGMPDIACIVVR 75 (372)
T ss_dssp ------CEEEEEECST-TTHHHHHTTSSCCTTE----EEEEEECCSSHHHHHHHHHTTCCEESSGGGCCSCCSEEEECCC
T ss_pred CCCCCCCCEEEEEehH-HHHHHHHHHHhCCCCe----EEEEEECCCHHHHHHHHHHhCCCEECCHHHHhcCCCEEEEECC
Confidence 4555556799999999 899888877654 34 665333999999988877 899988999999999999999998
Q ss_pred cccH----HHHHHHhccccCCCCEEEEecCCCCHHHHHHhh
Q 024016 81 PQVV----KDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWT 117 (274)
Q Consensus 81 ~~~~----~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~ 117 (274)
.... .++.... +..|+-|+ +-++++.++.++.+
T Consensus 76 ~~~h~~~~~~~a~~a---l~aGkhVl-~EKPl~~~ea~~l~ 112 (372)
T 4gmf_A 76 STVAGGAGTQLARHF---LARGVHVI-QEHPLHPDDISSLQ 112 (372)
T ss_dssp --CTTSHHHHHHHHH---HHTTCEEE-EESCCCHHHHHHHH
T ss_pred CcccchhHHHHHHHH---HHcCCcEE-EecCCCHHHHHHHH
Confidence 7653 3444332 33555555 34667766555443
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=3.8e-07 Score=78.49 Aligned_cols=99 Identities=16% Similarity=0.271 Sum_probs=67.4
Q ss_pred CCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH----HHHH------cCcee--ccCchhhccCC
Q 024016 5 PIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD----AFES------IGVKV--LSDNNAVVEYS 72 (274)
Q Consensus 5 ~~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~----~l~~------~g~~~--~~~~~~~~~~a 72 (274)
|-.|+++||+|||+|.||.+++..|...|+ . +|.+| |+++++++ ++.. ...++ +++ .+++++|
T Consensus 2 ~~~m~~~kI~viGaG~vG~~~a~~l~~~~~-~--~v~L~-Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d-~~a~~~a 76 (324)
T 3gvi_A 2 PGSMARNKIALIGSGMIGGTLAHLAGLKEL-G--DVVLF-DIAEGTPQGKGLDIAESSPVDGFDAKFTGAND-YAAIEGA 76 (324)
T ss_dssp ----CCCEEEEECCSHHHHHHHHHHHHTTC-C--EEEEE-CSSSSHHHHHHHHHHHHHHHHTCCCCEEEESS-GGGGTTC
T ss_pred CCCCcCCEEEEECCCHHHHHHHHHHHhCCC-C--eEEEE-eCCchhHHHHHHHHhchhhhcCCCCEEEEeCC-HHHHCCC
Confidence 455778899999999999999999999987 2 89999 99987654 2222 13333 344 4789999
Q ss_pred CEEEEeeC----cc------------cHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 73 DVVVFSVK----PQ------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 73 DiIil~v~----~~------------~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
|+||++.. |. .++++.+.+..+ .|+.+++..++++.
T Consensus 77 DiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~iivvtNPvd 128 (324)
T 3gvi_A 77 DVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKY-APEAFVICITNPLD 128 (324)
T ss_dssp SEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSSHH
T ss_pred CEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHH-CCCeEEEecCCCcH
Confidence 99999973 21 133444455554 47778887777654
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.1e-07 Score=81.04 Aligned_cols=95 Identities=13% Similarity=0.144 Sum_probs=67.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCc---eec--cCchhhccCCCEEEEeeCc
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGV---KVL--SDNNAVVEYSDVVVFSVKP 81 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~---~~~--~~~~~~~~~aDiIil~v~~ 81 (274)
...++|.|||+|.||.+++..|.+.|. .+|++| +|++++++.+.+ .+. .+. ++..+.+.++|+||.|+|.
T Consensus 139 l~~~~vlVlGaGg~g~aia~~L~~~G~---~~V~v~-nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~ 214 (297)
T 2egg_A 139 LDGKRILVIGAGGGARGIYFSLLSTAA---ERIDMA-NRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSV 214 (297)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTC---SEEEEE-CSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCT
T ss_pred CCCCEEEEECcHHHHHHHHHHHHHCCC---CEEEEE-eCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCC
Confidence 346799999999999999999999985 289999 999999988876 333 221 2445667889999999986
Q ss_pred ccHHHHH-HHh-ccccCCCCEEEEecC
Q 024016 82 QVVKDVA-MQI-RPLLSRKKLLVSVAA 106 (274)
Q Consensus 82 ~~~~~v~-~~i-~~~l~~~~~vis~~~ 106 (274)
.....+- ..+ ...++++.++++++-
T Consensus 215 ~~~~~~~~~~i~~~~l~~~~~v~D~~y 241 (297)
T 2egg_A 215 GMHPRVEVQPLSLERLRPGVIVSDIIY 241 (297)
T ss_dssp TCSSCCSCCSSCCTTCCTTCEEEECCC
T ss_pred CCCCCCCCCCCCHHHcCCCCEEEEcCC
Confidence 5321100 001 123567777777643
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.6e-07 Score=81.73 Aligned_cols=86 Identities=16% Similarity=0.228 Sum_probs=66.8
Q ss_pred CCeEEEEccc-HHHHHHHHHHHhCCCCCCCcEE-EEeCCCHHHHHHHHH-cCceeccCchhhcc--CCCEEEEeeCcccH
Q 024016 10 SFILGFIGAG-KMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVE--YSDVVVFSVKPQVV 84 (274)
Q Consensus 10 ~~~IgiIG~G-~mG~~~a~~L~~~g~~~~~~v~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~--~aDiIil~v~~~~~ 84 (274)
++||||||+| .||..++..|.+... .++. ++ ++++++++.+.+ .|+..++|..++++ +.|+|++|+|+...
T Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~---~~l~av~-d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~~~H 77 (387)
T 3moi_A 2 KIRFGICGLGFAGSVLMAPAMRHHPD---AQIVAAC-DPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPHQFH 77 (387)
T ss_dssp CEEEEEECCSHHHHTTHHHHHHHCTT---EEEEEEE-CSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCGGGH
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCC---eEEEEEE-eCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCcHHH
Confidence 4699999999 999999999987532 1555 56 999999887776 78888889988886 48999999999877
Q ss_pred HHHHHHhccccCCCCEEE
Q 024016 85 KDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vi 102 (274)
.++..... ..|+-|+
T Consensus 78 ~~~~~~al---~aGk~Vl 92 (387)
T 3moi_A 78 CEHVVQAS---EQGLHII 92 (387)
T ss_dssp HHHHHHHH---HTTCEEE
T ss_pred HHHHHHHH---HCCCcee
Confidence 66665543 3445454
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.8e-07 Score=81.80 Aligned_cols=89 Identities=12% Similarity=0.132 Sum_probs=68.4
Q ss_pred CCCCCeEEEEcccH---HHHHHHHHHHhCCCCCCCcEE--EEeCCCHHHHHHHHH-cCc---eeccCchhhccC------
Q 024016 7 PAESFILGFIGAGK---MAESIAKGVAKSGVLPPDRIC--TAVHSNLKRRDAFES-IGV---KVLSDNNAVVEY------ 71 (274)
Q Consensus 7 ~~~~~~IgiIG~G~---mG~~~a~~L~~~g~~~~~~v~--v~~~r~~~~~~~l~~-~g~---~~~~~~~~~~~~------ 71 (274)
+|+++||||||+|. ||...+..+...+. .++. ++ ++++++++.+.+ .|+ ..++|..+++++
T Consensus 9 ~m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~---~~lva~v~-d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~ 84 (398)
T 3dty_A 9 IPQPIRWAMVGGGSQSQIGYIHRCAALRDNT---FVLVAGAF-DIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRAD 84 (398)
T ss_dssp SCSCEEEEEEECCTTCSSHHHHHHHHHGGGS---EEEEEEEC-CSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTT
T ss_pred ccCcceEEEEcCCccchhHHHHHHHHhhCCC---eEEEEEEe-CCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCC
Confidence 46678999999999 99999988877652 1665 56 999999988776 787 577888888764
Q ss_pred -CCEEEEeeCcccHHHHHHHhccccCCCCEEE
Q 024016 72 -SDVVVFSVKPQVVKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 72 -aDiIil~v~~~~~~~v~~~i~~~l~~~~~vi 102 (274)
.|+|++|+|+....++..... ..|+-|+
T Consensus 85 ~vD~V~i~tp~~~H~~~~~~al---~aGkhVl 113 (398)
T 3dty_A 85 GIQAVSIATPNGTHYSITKAAL---EAGLHVV 113 (398)
T ss_dssp CCSEEEEESCGGGHHHHHHHHH---HTTCEEE
T ss_pred CCCEEEECCCcHHHHHHHHHHH---HCCCeEE
Confidence 899999999887766665543 2455554
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=1.1e-06 Score=75.52 Aligned_cols=98 Identities=14% Similarity=0.193 Sum_probs=69.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH---c------CceeccCchhhccCCCEEEEee
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES---I------GVKVLSDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~---~------g~~~~~~~~~~~~~aDiIil~v 79 (274)
+.+||+|||+|.+|.+++..|...+++ .+|.++ |+++++++.... . .+++..+..+.+++||+||++.
T Consensus 4 ~~~KI~IiGaG~vG~~~a~~l~~~~~~--~el~L~-Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~a 80 (318)
T 1ez4_A 4 NHQKVVLVGDGAVGSSYAFAMAQQGIA--EEFVIV-DVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITA 80 (318)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHHTCC--SEEEEE-CSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHcCCCC--CEEEEE-eCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECC
Confidence 347999999999999999999988863 379999 999887764221 1 2334445677899999999998
Q ss_pred Ccc----------------cHHHHHHHhccccCCCCEEEEecCCCCH
Q 024016 80 KPQ----------------VVKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (274)
Q Consensus 80 ~~~----------------~~~~v~~~i~~~l~~~~~vis~~~g~~~ 110 (274)
+.. .++++.+.+..+ .|+..++..++++..
T Consensus 81 g~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNPv~~ 126 (318)
T 1ez4_A 81 GAPQKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLVAANPVDI 126 (318)
T ss_dssp CC----------CHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCcHHH
Confidence 421 233444555554 577777777776543
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=98.50 E-value=5e-07 Score=77.70 Aligned_cols=98 Identities=15% Similarity=0.238 Sum_probs=67.8
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH----HHHH------cCceec-cCchhhccCCCEE
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD----AFES------IGVKVL-SDNNAVVEYSDVV 75 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~----~l~~------~g~~~~-~~~~~~~~~aDiI 75 (274)
.|+++||+|||+|.||.+++..|...|+ . +|.++ |+++++++ .+.. ...++. ++..+.+++||+|
T Consensus 2 ~m~~~kI~iiGaG~vG~~~a~~l~~~~~-~--~v~l~-Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~a~~~aDvV 77 (321)
T 3p7m_A 2 AMARKKITLVGAGNIGGTLAHLALIKQL-G--DVVLF-DIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVV 77 (321)
T ss_dssp -CCCCEEEEECCSHHHHHHHHHHHHTTC-C--EEEEE-CSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCC-c--eEEEE-eCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHHHHCCCCEE
Confidence 3567899999999999999999999886 2 89999 99987754 2222 123332 3445788999999
Q ss_pred EEeeC----cc------------cHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 76 VFSVK----PQ------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 76 il~v~----~~------------~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
|++.. |. .++++.+.+..+ .|+.+++..++++.
T Consensus 78 Ii~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~vivvtNPvd 126 (321)
T 3p7m_A 78 IVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHN-CPNAFVICITNPLD 126 (321)
T ss_dssp EECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSSHH
T ss_pred EEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHH-CCCcEEEEecCchH
Confidence 99962 21 133444555555 37777777766654
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=7.6e-07 Score=80.18 Aligned_cols=88 Identities=17% Similarity=0.194 Sum_probs=65.1
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhC-CCCCCCcEE-EEeCCCHHHHHHHHH----cC---ceecc----Cchhhcc--C
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES----IG---VKVLS----DNNAVVE--Y 71 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~-g~~~~~~v~-v~~~r~~~~~~~l~~----~g---~~~~~----~~~~~~~--~ 71 (274)
+|+++||||||+|.||...+..|.+. ++ +|. ++ ++++++++.+.+ .| ...++ |..++++ +
T Consensus 17 ~~~~~rvgiIG~G~~g~~h~~~l~~~~~~----~lvav~-d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~ 91 (444)
T 2ixa_A 17 NPKKVRIAFIAVGLRGQTHVENMARRDDV----EIVAFA-DPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKN 91 (444)
T ss_dssp --CCEEEEEECCSHHHHHHHHHHHTCTTE----EEEEEE-CSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTT
T ss_pred CCCCceEEEEecCHHHHHHHHHHHhCCCc----EEEEEE-eCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCC
Confidence 45567999999999999999998874 44 654 66 999999887654 35 46677 8888886 5
Q ss_pred CCEEEEeeCcccHHHHHHHhccccCCCCEEE
Q 024016 72 SDVVVFSVKPQVVKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 72 aDiIil~v~~~~~~~v~~~i~~~l~~~~~vi 102 (274)
.|+|++|+|+....++..... ..|+-|+
T Consensus 92 vD~V~i~tp~~~h~~~~~~al---~aGkhV~ 119 (444)
T 2ixa_A 92 IDAVFVSSPWEWHHEHGVAAM---KAGKIVG 119 (444)
T ss_dssp CCEEEECCCGGGHHHHHHHHH---HTTCEEE
T ss_pred CCEEEEcCCcHHHHHHHHHHH---HCCCeEE
Confidence 899999999887666655433 3455444
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=5.1e-07 Score=68.52 Aligned_cols=95 Identities=17% Similarity=0.153 Sum_probs=69.7
Q ss_pred CCeEEEEcc----cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHH
Q 024016 10 SFILGFIGA----GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (274)
Q Consensus 10 ~~~IgiIG~----G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~ 85 (274)
..+|+|||+ |++|..++++|.+.|| +|+ +.++.. +.+ .|+.++.+..++.+..|++++++|++.+.
T Consensus 22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~----~v~---~Vnp~~-~~i--~G~~~y~sl~~l~~~vDlvvi~vp~~~~~ 91 (144)
T 2d59_A 22 YKKIALVGASPKPERDANIVMKYLLEHGY----DVY---PVNPKY-EEV--LGRKCYPSVLDIPDKIEVVDLFVKPKLTM 91 (144)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTC----EEE---EECTTC-SEE--TTEECBSSGGGCSSCCSEEEECSCHHHHH
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHHCCC----EEE---EECCCC-CeE--CCeeccCCHHHcCCCCCEEEEEeCHHHHH
Confidence 468999999 7999999999999998 754 445543 111 58888888888888899999999999999
Q ss_pred HHHHHhccccCCCCEEEEecCCCCHHHHHHhh
Q 024016 86 DVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWT 117 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~ 117 (274)
++++++...- .+.++ +..|...+.+.+..
T Consensus 92 ~vv~~~~~~g-i~~i~--~~~g~~~~~l~~~a 120 (144)
T 2d59_A 92 EYVEQAIKKG-AKVVW--FQYNTYNREASKKA 120 (144)
T ss_dssp HHHHHHHHHT-CSEEE--ECTTCCCHHHHHHH
T ss_pred HHHHHHHHcC-CCEEE--ECCCchHHHHHHHH
Confidence 9998766532 33343 33455445555444
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1.3e-06 Score=75.07 Aligned_cols=97 Identities=18% Similarity=0.237 Sum_probs=68.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH----HHH-----cCceeccCchhhccCCCEEEEee
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FES-----IGVKVLSDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~----l~~-----~g~~~~~~~~~~~~~aDiIil~v 79 (274)
+.+||+|||+|.||++++..|...|+. .++.++ |+++++++- +.. .++++.++..+.+++||+||++.
T Consensus 8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~--~el~l~-D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~a 84 (326)
T 3vku_A 8 DHQKVILVGDGAVGSSYAYAMVLQGIA--QEIGIV-DIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITA 84 (326)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCC--SEEEEE-CSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCC--CeEEEE-eCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECC
Confidence 567999999999999999999998874 389999 999887763 322 13445556677899999999986
Q ss_pred C----cc------------cHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 80 K----PQ------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 80 ~----~~------------~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
. |. .++++.+.+..+ .|+..++..++++.
T Consensus 85 g~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~-~p~a~ilvvtNPvd 129 (326)
T 3vku_A 85 GAPQKPGETRLDLVNKNLKILKSIVDPIVDS-GFNGIFLVAANPVD 129 (326)
T ss_dssp CCC----------------CHHHHHHHHHTT-TCCSEEEECSSSHH
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEccCchH
Confidence 2 21 133444455554 46777777766654
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.48 E-value=5.1e-07 Score=80.45 Aligned_cols=91 Identities=18% Similarity=0.257 Sum_probs=65.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCC-----CCCCcEEEEeCCCHHHHHHHHH-cCc-eeccCchhhcc--CCCEEEEee
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGV-----LPPDRICTAVHSNLKRRDAFES-IGV-KVLSDNNAVVE--YSDVVVFSV 79 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~-----~~~~~v~v~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~--~aDiIil~v 79 (274)
+++||||||+|.||...+..+.+.+. ....+|...+|+++++++++.+ .|+ .+++|..++++ +.|+|++|+
T Consensus 25 ~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~I~t 104 (412)
T 4gqa_A 25 ARLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVDITS 104 (412)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECS
T ss_pred ccceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEEECC
Confidence 45799999999999999888876431 0011455333999999988877 676 57788888875 579999999
Q ss_pred CcccHHHHHHHhccccCCCCEEE
Q 024016 80 KPQVVKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 80 ~~~~~~~v~~~i~~~l~~~~~vi 102 (274)
|+..-.++..... ..|+-|+
T Consensus 105 p~~~H~~~~~~al---~aGkhVl 124 (412)
T 4gqa_A 105 PNHLHYTMAMAAI---AAGKHVY 124 (412)
T ss_dssp CGGGHHHHHHHHH---HTTCEEE
T ss_pred CcHHHHHHHHHHH---HcCCCeE
Confidence 9988766665443 3444444
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.48 E-value=4.2e-07 Score=81.17 Aligned_cols=88 Identities=16% Similarity=0.211 Sum_probs=66.8
Q ss_pred CCCCeEEEEcccH---HHHHHHHHHHhCCCCCCCcEE--EEeCCCHHHHHHHHH-cCc---eeccCchhhccC-------
Q 024016 8 AESFILGFIGAGK---MAESIAKGVAKSGVLPPDRIC--TAVHSNLKRRDAFES-IGV---KVLSDNNAVVEY------- 71 (274)
Q Consensus 8 ~~~~~IgiIG~G~---mG~~~a~~L~~~g~~~~~~v~--v~~~r~~~~~~~l~~-~g~---~~~~~~~~~~~~------- 71 (274)
|+++||||||+|. ||...+..+...+. .++. ++ +|++++++.+.+ .|+ ..++|.++++++
T Consensus 35 m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~---~~lva~v~-d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~ 110 (417)
T 3v5n_A 35 QKRIRLGMVGGGSGAFIGAVHRIAARLDDH---YELVAGAL-SSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNG 110 (417)
T ss_dssp CCCEEEEEESCC--CHHHHHHHHHHHHTSC---EEEEEEEC-CSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTC
T ss_pred CCcceEEEEcCCCchHHHHHHHHHHhhCCC---cEEEEEEe-CCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCC
Confidence 4567999999999 99999888877652 1654 56 999999988776 677 577888888765
Q ss_pred CCEEEEeeCcccHHHHHHHhccccCCCCEEE
Q 024016 72 SDVVVFSVKPQVVKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 72 aDiIil~v~~~~~~~v~~~i~~~l~~~~~vi 102 (274)
.|+|++|+|+....++..... ..|+-|+
T Consensus 111 vD~V~I~tp~~~H~~~~~~al---~aGkhVl 138 (417)
T 3v5n_A 111 IEAVAIVTPNHVHYAAAKEFL---KRGIHVI 138 (417)
T ss_dssp CSEEEECSCTTSHHHHHHHHH---TTTCEEE
T ss_pred CcEEEECCCcHHHHHHHHHHH---hCCCeEE
Confidence 899999999887777665543 4555555
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=6e-06 Score=68.07 Aligned_cols=164 Identities=15% Similarity=0.212 Sum_probs=115.3
Q ss_pred cCceeccCchhhccCCCEEEEeeCccc-HHHHHHHhccccCCCCEEEEecCCCCHHHHHHh---hC--CCceEEEcCCc-
Q 024016 57 IGVKVLSDNNAVVEYSDVVVFSVKPQV-VKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEW---TG--HSRFIRVMPNT- 129 (274)
Q Consensus 57 ~g~~~~~~~~~~~~~aDiIil~v~~~~-~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~---~~--~~~~~~~~p~~- 129 (274)
.|+++.+|..|+++++|++|+-+|-.. ..++++++.++++.|.+|.++ .++++-.+... ++ +..+.++||..
T Consensus 127 aGVkVtsDD~EAvk~AEi~IlftPfG~~t~~Iakkii~~lpEgAII~nT-CTipp~~ly~~le~l~R~DvgIsS~HPaaV 205 (358)
T 2b0j_A 127 VGLKVTSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHA-CTIPTTKFAKIFKDLGREDLNITSYHPGCV 205 (358)
T ss_dssp GTCEEESCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEEC-SSSCHHHHHHHHHHTTCTTSEEEECBCSSC
T ss_pred cCcEeecchHHHhcCCCEEEEecCCCCCcHHHHHHHHhhCcCCCEEecc-cCCCHHHHHHHHHHhCcccCCeeccCCCCC
Confidence 377888888999999999999999655 778999999999999876655 55665444333 33 35677888864
Q ss_pred HHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCCe-EEcCccchhhHHHhhcchHHHHHHHHHHHHHH---H-HHcCCCH
Q 024016 130 PSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADG---G-VAAGLPR 204 (274)
Q Consensus 130 ~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~-~~~~e~~~~~~~a~~~~~~~~~~~~~~~l~e~---~-~~~Gl~~ 204 (274)
|.. .|.....- .-.++++++++.++.+..|+. +.++.+....+.-+ +....+....++.+. . +-.|-+.
T Consensus 206 Pgt--~Gq~~~g~-~yAtEEqIeklveLaksa~k~ay~vPAdl~SpV~DM---gs~vTAv~~AGiL~Y~~~vtkIlgAP~ 279 (358)
T 2b0j_A 206 PEM--KGQVYIAE-GYASEEAVNKLYEIGKIARGKAFKMPANLIGPVCDM---CSAVTATVYAGLLAYRDAVTKILGAPA 279 (358)
T ss_dssp TTT--CCCEEEEE-SSSCHHHHHHHHHHHHHHHSCEEEEEHHHHHHHHST---THHHHHHHHHHHHHHHHHHHTTSCCCH
T ss_pred CCC--CCcccccc-ccCCHHHHHHHHHHHHHhCCCeEecchhhccchhhh---HHHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence 332 34333322 234789999999999999976 77777555444333 344444444454443 2 3478899
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Q 024016 205 ELALGLASQTVLGAASMVTKSGK 227 (274)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~ 227 (274)
+.+...+..++...+.+++++|.
T Consensus 280 ~mie~q~~esL~tiasLve~~GI 302 (358)
T 2b0j_A 280 DFAQMMADEALTQIHNLMKEKGI 302 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHHHHHHHHhhH
Confidence 98888899999888888887664
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.48 E-value=8.4e-07 Score=77.03 Aligned_cols=86 Identities=14% Similarity=0.224 Sum_probs=66.4
Q ss_pred CCCeEEEEccc-HHHHHHHHHHHhC--CCCCCCcE-EEEeCCCHHHHHHHHH-cCc-eeccCchhhcc--CCCEEEEeeC
Q 024016 9 ESFILGFIGAG-KMAESIAKGVAKS--GVLPPDRI-CTAVHSNLKRRDAFES-IGV-KVLSDNNAVVE--YSDVVVFSVK 80 (274)
Q Consensus 9 ~~~~IgiIG~G-~mG~~~a~~L~~~--g~~~~~~v-~v~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~--~aDiIil~v~ 80 (274)
+++||||||+| .||...+..|.+. ++ ++ .++ ++++++++.+.+ .|+ ..++|..++++ +.|+|++|+|
T Consensus 17 ~~irvgiIG~G~~~g~~~~~~l~~~~~~~----~lvav~-d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp 91 (340)
T 1zh8_A 17 RKIRLGIVGCGIAARELHLPALKNLSHLF----EITAVT-SRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLP 91 (340)
T ss_dssp CCEEEEEECCSHHHHHTHHHHHHTTTTTE----EEEEEE-CSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCC
T ss_pred CceeEEEEecCHHHHHHHHHHHHhCCCce----EEEEEE-cCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCC
Confidence 35799999999 8999999999876 33 55 466 999999988776 676 67888888875 5899999999
Q ss_pred cccHHHHHHHhccccCCCCEEE
Q 024016 81 PQVVKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 81 ~~~~~~v~~~i~~~l~~~~~vi 102 (274)
+....++..... ..|+-|+
T Consensus 92 ~~~H~~~~~~al---~aGkhVl 110 (340)
T 1zh8_A 92 VELNLPFIEKAL---RKGVHVI 110 (340)
T ss_dssp GGGHHHHHHHHH---HTTCEEE
T ss_pred chHHHHHHHHHH---HCCCcEE
Confidence 887766665543 3455444
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.1e-06 Score=77.86 Aligned_cols=91 Identities=13% Similarity=0.105 Sum_probs=70.8
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCccc-H-
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV-V- 84 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~-~- 84 (274)
....++++|||+|.+|..+|+.+...|. +|+++ ++++.+.......|..+. +..++++.+|+|++++.... +
T Consensus 244 ~L~GKTVgVIG~G~IGr~vA~~lrafGa----~Viv~-d~dp~~a~~A~~~G~~vv-~LeElL~~ADIVv~atgt~~lI~ 317 (464)
T 3n58_A 244 MMAGKVAVVCGYGDVGKGSAQSLAGAGA----RVKVT-EVDPICALQAAMDGFEVV-TLDDAASTADIVVTTTGNKDVIT 317 (464)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSHHHHHHHHHTTCEEC-CHHHHGGGCSEEEECCSSSSSBC
T ss_pred cccCCEEEEECcCHHHHHHHHHHHHCCC----EEEEE-eCCcchhhHHHhcCceec-cHHHHHhhCCEEEECCCCccccC
Confidence 3456899999999999999999999998 99999 999977655555777664 67889999999999875332 2
Q ss_pred HHHHHHhccccCCCCEEEEecCC
Q 024016 85 KDVAMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~~g 107 (274)
.+.+. .++++.++|++.-+
T Consensus 318 ~e~l~----~MK~GAILINvGRg 336 (464)
T 3n58_A 318 IDHMR----KMKDMCIVGNIGHF 336 (464)
T ss_dssp HHHHH----HSCTTEEEEECSSS
T ss_pred HHHHh----cCCCCeEEEEcCCC
Confidence 33333 36788999987543
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=3.1e-07 Score=81.16 Aligned_cols=90 Identities=11% Similarity=0.097 Sum_probs=69.8
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccHH-
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVK- 85 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~- 85 (274)
...++|+|+|+|.+|..+++.|...|. +|+++ ++++.+.......|... .+..++++.+|+|++|.. ...+.
T Consensus 218 L~GktV~ViG~G~IGk~vA~~Lra~Ga----~Viv~-D~dp~ra~~A~~~G~~v-~~Leeal~~ADIVi~atgt~~lI~~ 291 (435)
T 3gvp_A 218 FGGKQVVVCGYGEVGKGCCAALKAMGS----IVYVT-EIDPICALQACMDGFRL-VKLNEVIRQVDIVITCTGNKNVVTR 291 (435)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTTCEE-CCHHHHTTTCSEEEECSSCSCSBCH
T ss_pred ecCCEEEEEeeCHHHHHHHHHHHHCCC----EEEEE-eCChhhhHHHHHcCCEe-ccHHHHHhcCCEEEECCCCcccCCH
Confidence 345799999999999999999999998 99999 99997766555577655 467889999999999853 22232
Q ss_pred HHHHHhccccCCCCEEEEecCC
Q 024016 86 DVAMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~~g 107 (274)
+.+. .++++.++|++..+
T Consensus 292 e~l~----~MK~gailINvgrg 309 (435)
T 3gvp_A 292 EHLD----RMKNSCIVCNMGHS 309 (435)
T ss_dssp HHHH----HSCTTEEEEECSST
T ss_pred HHHH----hcCCCcEEEEecCC
Confidence 4443 36788889887654
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=98.47 E-value=1.1e-06 Score=74.87 Aligned_cols=95 Identities=16% Similarity=0.266 Sum_probs=66.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH---HHHHHH---cCceeccCchhhccCCCEEEEeeCc--
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR---RDAFES---IGVKVLSDNNAVVEYSDVVVFSVKP-- 81 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~---~~~l~~---~g~~~~~~~~~~~~~aDiIil~v~~-- 81 (274)
++||+|||+|.||..++..|+..|+. .+|.++ |++++. +..+.. ..++...+. +.+++||+||++...
T Consensus 14 ~~kV~ViGaG~vG~~~a~~l~~~g~~--~ev~L~-Di~~~~~g~a~dl~~~~~~~i~~t~d~-~~l~~aD~Vi~aag~~~ 89 (303)
T 2i6t_A 14 VNKITVVGGGELGIACTLAISAKGIA--DRLVLL-DLSEGTKGATMDLEIFNLPNVEISKDL-SASAHSKVVIFTVNSLG 89 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCC--SEEEEE-CCC-----CHHHHHHHTCTTEEEESCG-GGGTTCSEEEECCCC--
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCC--CEEEEE-cCCcchHHHHHHHhhhcCCCeEEeCCH-HHHCCCCEEEEcCCCCC
Confidence 47999999999999999999998863 379999 998742 223332 234555565 678999999999721
Q ss_pred -------------ccHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 82 -------------QVVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 82 -------------~~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
..++++++++..+. |+.+++..++++.
T Consensus 90 pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~sNP~~ 129 (303)
T 2i6t_A 90 SSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVASQPVE 129 (303)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECSSSHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcCChHH
Confidence 12556666676664 7778777777654
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.2e-06 Score=75.00 Aligned_cols=95 Identities=21% Similarity=0.301 Sum_probs=66.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH----HHHH------cCceec-cCchhhccCCCEEEEee
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD----AFES------IGVKVL-SDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~----~l~~------~g~~~~-~~~~~~~~~aDiIil~v 79 (274)
|||+|||+|.||.+++..|...|+. .+|.++ |+++++++ ++.. ....+. ++..+.+++||+||++.
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~~~~--~el~l~-D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~a 77 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQDVA--KEVVMV-DIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITA 77 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCS--SEEEEE-CSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCC--CEEEEE-eCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECC
Confidence 6999999999999999999998863 389999 99987754 2222 133443 35677899999999997
Q ss_pred C-c---c------------cHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 80 K-P---Q------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 80 ~-~---~------------~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
. | . .++++.+.+..+ .|+.+++..++++.
T Consensus 78 g~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~vivvtNPvd 122 (314)
T 3nep_X 78 GLPRSPGMSRDDLLAKNTEIVGGVTEQFVEG-SPDSTIIVVANPLD 122 (314)
T ss_dssp CC-------CHHHHHHHHHHHHHHHHHHHTT-CTTCEEEECCSSHH
T ss_pred CCCCCCCCCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEecCCchh
Confidence 3 2 1 123333445554 57778887777654
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=7.3e-08 Score=81.14 Aligned_cols=93 Identities=16% Similarity=0.175 Sum_probs=64.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcC-ceeccCchhhccCCCEEEEeeCcccHHHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG-VKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g-~~~~~~~~~~~~~aDiIil~v~~~~~~~v 87 (274)
+.+++.|||+|.||.+++..|.+.|. .+|+++ +|++++++.+.+.. .....+..+.+.++|+||-|||......+
T Consensus 116 ~~k~vlvlGaGg~g~aia~~L~~~G~---~~v~v~-~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~ 191 (277)
T 3don_A 116 EDAYILILGAGGASKGIANELYKIVR---PTLTVA-NRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMNGNT 191 (277)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHTTCC---SCCEEE-CSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC-------
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC---CEEEEE-eCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCCCCC
Confidence 45789999999999999999999996 379999 99999887766421 11234455667889999999986533221
Q ss_pred HHHh-ccccCCCCEEEEec
Q 024016 88 AMQI-RPLLSRKKLLVSVA 105 (274)
Q Consensus 88 ~~~i-~~~l~~~~~vis~~ 105 (274)
-..+ ...++++.++++++
T Consensus 192 ~~~l~~~~l~~~~~V~D~v 210 (277)
T 3don_A 192 DSVISLNRLASHTLVSDIV 210 (277)
T ss_dssp CCSSCCTTCCSSCEEEESC
T ss_pred cCCCCHHHcCCCCEEEEec
Confidence 1011 23467888888875
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=98.46 E-value=8.7e-07 Score=77.29 Aligned_cols=84 Identities=17% Similarity=0.266 Sum_probs=62.4
Q ss_pred CCCeEEEEcccHHHHH-HHHHHHhC-CCCCCCcEE-EEeCCCHHHHHHHHH-cCceeccCchhhccC--CCEEEEeeCcc
Q 024016 9 ESFILGFIGAGKMAES-IAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVEY--SDVVVFSVKPQ 82 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~-~a~~L~~~-g~~~~~~v~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~--aDiIil~v~~~ 82 (274)
+++||||||+|.||.. .+..+.+. ++ +|. ++ ++++++++ .+ .++..++|..+++++ .|+|++|+|+.
T Consensus 6 ~~~rvgiiG~G~~g~~~~~~~~~~~~~~----~l~av~-d~~~~~~~--~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~ 78 (352)
T 3kux_A 6 DKIKVGLLGYGYASKTFHAPLIMGTPGL----ELAGVS-SSDASKVH--ADWPAIPVVSDPQMLFNDPSIDLIVIPTPND 78 (352)
T ss_dssp CCEEEEEECCSHHHHHTHHHHHHTSTTE----EEEEEE-CSCHHHHH--TTCSSCCEESCHHHHHHCSSCCEEEECSCTT
T ss_pred CCceEEEECCCHHHHHHHHHHHhhCCCc----EEEEEE-CCCHHHHH--hhCCCCceECCHHHHhcCCCCCEEEEeCChH
Confidence 4579999999999997 67777665 44 665 66 99998876 23 467778888888865 89999999988
Q ss_pred cHHHHHHHhccccCCCCEEE
Q 024016 83 VVKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vi 102 (274)
...++..... ..|+-|+
T Consensus 79 ~H~~~~~~al---~aGkhV~ 95 (352)
T 3kux_A 79 THFPLAQSAL---AAGKHVV 95 (352)
T ss_dssp THHHHHHHHH---HTTCEEE
T ss_pred HHHHHHHHHH---HCCCcEE
Confidence 7766655433 3455454
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.46 E-value=1e-06 Score=77.30 Aligned_cols=95 Identities=17% Similarity=0.240 Sum_probs=66.3
Q ss_pred CCCeEEEEcccHHHHH-HHHHHHhC-CCCCCCcEE-EEeCCCHHHHHHHHH-cCceeccCchhhcc--CCCEEEEeeCcc
Q 024016 9 ESFILGFIGAGKMAES-IAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVE--YSDVVVFSVKPQ 82 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~-~a~~L~~~-g~~~~~~v~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~--~aDiIil~v~~~ 82 (274)
+++||||||+|.||.. .+..+.+. ++ +|. ++ ++++++++ .+ .++..++|..++++ +.|+|++|+|+.
T Consensus 6 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~----~l~av~-d~~~~~~~--~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~ 78 (364)
T 3e82_A 6 NTINIALIGYGFVGKTFHAPLIRSVPGL----NLAFVA-SRDEEKVK--RDLPDVTVIASPEAAVQHPDVDLVVIASPNA 78 (364)
T ss_dssp -CEEEEEECCSHHHHHTHHHHHHTSTTE----EEEEEE-CSCHHHHH--HHCTTSEEESCHHHHHTCTTCSEEEECSCGG
T ss_pred CcceEEEECCCHHHHHHHHHHHhhCCCe----EEEEEE-cCCHHHHH--hhCCCCcEECCHHHHhcCCCCCEEEEeCChH
Confidence 4579999999999997 66666654 44 665 66 99998765 23 46778889999887 789999999988
Q ss_pred cHHHHHHHhccccCCCCEEEEecCC--CCHHHHH
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSVAAG--VKLKDLQ 114 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~~~g--~~~~~l~ 114 (274)
...++..... ..|+-|+. -++ .+.+..+
T Consensus 79 ~H~~~~~~al---~aGk~Vl~-EKPla~~~~e~~ 108 (364)
T 3e82_A 79 THAPLARLAL---NAGKHVVV-DKPFTLDMQEAR 108 (364)
T ss_dssp GHHHHHHHHH---HTTCEEEE-CSCSCSSHHHHH
T ss_pred HHHHHHHHHH---HCCCcEEE-eCCCcCCHHHHH
Confidence 7766665433 34555553 343 3444433
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.44 E-value=7e-07 Score=78.68 Aligned_cols=97 Identities=20% Similarity=0.214 Sum_probs=64.8
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCC----CCCCCcEEEEeCCCHHHHHHHHH-cCc-eeccCchhhcc--CCCEEEEee
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSG----VLPPDRICTAVHSNLKRRDAFES-IGV-KVLSDNNAVVE--YSDVVVFSV 79 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g----~~~~~~v~v~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~--~aDiIil~v 79 (274)
|++.||||||+|.||..-+..+.+.. ..+..+|+..+|+++++++++.+ .|+ .+++|..++++ +.|+|++|+
T Consensus 23 MkkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~Iat 102 (393)
T 4fb5_A 23 MKPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVTT 102 (393)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEECS
T ss_pred CCCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEECC
Confidence 56679999999999998777664421 01122555444999999988877 676 57788888875 579999999
Q ss_pred CcccHHHHHHHhccccCCCCEEEEecCCC
Q 024016 80 KPQVVKDVAMQIRPLLSRKKLLVSVAAGV 108 (274)
Q Consensus 80 ~~~~~~~v~~~i~~~l~~~~~vis~~~g~ 108 (274)
|+..-.++..... ..|+-|+ +-+++
T Consensus 103 P~~~H~~~a~~al---~aGkhVl-~EKPl 127 (393)
T 4fb5_A 103 PNQFHAEMAIAAL---EAGKHVW-CEKPM 127 (393)
T ss_dssp CGGGHHHHHHHHH---HTTCEEE-ECSCS
T ss_pred ChHHHHHHHHHHH---hcCCeEE-EccCC
Confidence 9988766665443 2454444 33443
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=98.44 E-value=1.9e-06 Score=73.85 Aligned_cols=95 Identities=20% Similarity=0.243 Sum_probs=67.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH---c------CceeccCchhhccCCCEEEEeeC-
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES---I------GVKVLSDNNAVVEYSDVVVFSVK- 80 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~---~------g~~~~~~~~~~~~~aDiIil~v~- 80 (274)
|||+|||+|.+|.+++..|...+.. .+|.++ |+++++++.... . .+++..+..+++++||+||++.+
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~~~~--~el~L~-Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~ 77 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALLGVA--REVVLV-DLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGV 77 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCC--SEEEEE-CSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCC--CEEEEE-eCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCC
Confidence 6999999999999999999988753 389999 999887764221 1 23343345777999999999873
Q ss_pred cc---------------cHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 81 PQ---------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 81 ~~---------------~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
+. .++++.+.+..+ .|+..++..++++.
T Consensus 78 ~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNPv~ 120 (310)
T 2xxj_A 78 AQRPGETRLQLLDRNAQVFAQVVPRVLEA-APEAVLLVATNPVD 120 (310)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHH
T ss_pred CCCCCcCHHHHHHhhHHHHHHHHHHHHHH-CCCcEEEEecCchH
Confidence 21 133444555555 57777777777654
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=98.44 E-value=3.5e-07 Score=82.26 Aligned_cols=78 Identities=13% Similarity=0.221 Sum_probs=62.4
Q ss_pred CCCeEEEEcc----cHHHHHHHHHHHhC--CCCCCCcE-EEEeCCCHHHHHHHHH-cCce---eccCchhhcc--CCCEE
Q 024016 9 ESFILGFIGA----GKMAESIAKGVAKS--GVLPPDRI-CTAVHSNLKRRDAFES-IGVK---VLSDNNAVVE--YSDVV 75 (274)
Q Consensus 9 ~~~~IgiIG~----G~mG~~~a~~L~~~--g~~~~~~v-~v~~~r~~~~~~~l~~-~g~~---~~~~~~~~~~--~aDiI 75 (274)
+++||||||+ |.||..++..|.+. ++ +| .++ ++++++++.+.+ .|+. .+++..++++ +.|+|
T Consensus 19 ~~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~----~lvav~-d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V 93 (438)
T 3btv_A 19 APIRVGFVGLNAAKGWAIKTHYPAILQLSSQF----QITALY-SPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMI 93 (438)
T ss_dssp CCEEEEEESCCTTSSSTTTTHHHHHHHTTTTE----EEEEEE-CSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEE
T ss_pred CCCEEEEEcccCCCChHHHHHHHHHHhcCCCe----EEEEEE-eCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEE
Confidence 4579999999 99999999999886 44 65 466 999999888776 5654 7788888876 68999
Q ss_pred EEeeCcccHHHHHHHh
Q 024016 76 VFSVKPQVVKDVAMQI 91 (274)
Q Consensus 76 il~v~~~~~~~v~~~i 91 (274)
++|+|+....+++...
T Consensus 94 ~i~tp~~~H~~~~~~a 109 (438)
T 3btv_A 94 VIAIQVASHYEVVMPL 109 (438)
T ss_dssp EECSCHHHHHHHHHHH
T ss_pred EEeCCcHHHHHHHHHH
Confidence 9999988766655443
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.3e-06 Score=74.87 Aligned_cols=93 Identities=19% Similarity=0.177 Sum_probs=64.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH---c-------C--ceeccCchhhccCCCEEEEe
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES---I-------G--VKVLSDNNAVVEYSDVVVFS 78 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~---~-------g--~~~~~~~~~~~~~aDiIil~ 78 (274)
+||+|||+|.||.+++..|...|++ +|.++ |+++++++.... . . ++.+++. +.+++||+||++
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~g~~---~v~L~-Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a 77 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAKELG---DIVLL-DIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVT 77 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCS---EEEEE-CSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCC---eEEEE-eCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEc
Confidence 6999999999999999999999863 68899 998876643221 1 2 2233455 778999999999
Q ss_pred eC-c---------------ccHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 79 VK-P---------------QVVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 79 v~-~---------------~~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
+. | ..++++.+.+..+- |+.+++-.++++.
T Consensus 78 ~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNPv~ 123 (309)
T 1ur5_A 78 SGAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVIIMVNNPLD 123 (309)
T ss_dssp CCC--------CHHHHHHHHHHHHHHHHHGGGC-TTCEEEECCSSHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEcCCchH
Confidence 83 1 12345555666553 7777766666544
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=98.43 E-value=9e-07 Score=77.89 Aligned_cols=94 Identities=12% Similarity=0.107 Sum_probs=65.6
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCC----CCCcEEEEeCCCHHHHHHHHH-cCc-eeccCchhhcc--CCCEEEE
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVL----PPDRICTAVHSNLKRRDAFES-IGV-KVLSDNNAVVE--YSDVVVF 77 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~----~~~~v~v~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~--~aDiIil 77 (274)
+.|++.||||||+|.||...+..+.+...+ ...+|...+++++++++.+.+ .|+ .+++|..++++ +.|+|++
T Consensus 2 ~~M~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I 81 (390)
T 4h3v_A 2 NAMTNLGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDV 81 (390)
T ss_dssp --CCEEEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEE
T ss_pred CCCCcCcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEE
Confidence 456667999999999999888887653210 001454333999999988876 676 56788888876 4799999
Q ss_pred eeCcccHHHHHHHhccccCCCCEEE
Q 024016 78 SVKPQVVKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 78 ~v~~~~~~~v~~~i~~~l~~~~~vi 102 (274)
|+|+....++..... ..|+-|+
T Consensus 82 ~tP~~~H~~~~~~al---~aGkhVl 103 (390)
T 4h3v_A 82 CTPGDSHAEIAIAAL---EAGKHVL 103 (390)
T ss_dssp CSCGGGHHHHHHHHH---HTTCEEE
T ss_pred eCChHHHHHHHHHHH---HcCCCce
Confidence 999888766665433 2444444
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=2.7e-06 Score=73.10 Aligned_cols=97 Identities=12% Similarity=-0.030 Sum_probs=69.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH----HHc-------CceeccCchhhccCCCEEEE
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF----ESI-------GVKVLSDNNAVVEYSDVVVF 77 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l----~~~-------g~~~~~~~~~~~~~aDiIil 77 (274)
..+||+|||+|.||.+++..|...|++. +|.++ |+++++++.. ... .+...++.++ +++||+||+
T Consensus 20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~--ev~L~-Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIi 95 (330)
T 3ldh_A 20 SYNKITVVGCDAVGMADAISVLMKDLAD--EVALV-DVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVI 95 (330)
T ss_dssp CCCEEEEESTTHHHHHHHHHHHHHCCCS--EEEEE-CSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCC--eEEEE-ECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEE
Confidence 3579999999999999999999988643 79999 9998776532 210 1223445554 899999999
Q ss_pred eeC-c---------------ccHHHHHHHhccccCCCCEEEEecCCCCH
Q 024016 78 SVK-P---------------QVVKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (274)
Q Consensus 78 ~v~-~---------------~~~~~v~~~i~~~l~~~~~vis~~~g~~~ 110 (274)
+.. | ..++++.+++..+ .|+..++..++++..
T Consensus 96 taG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~-~P~a~ilvvtNPvdi 143 (330)
T 3ldh_A 96 TAGARQQEGESRLNLVQRNVNIFKFIIPNIVKH-SPDCLKELHPELGTD 143 (330)
T ss_dssp CCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHHH
T ss_pred eCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCceEEeCCCccHH
Confidence 862 1 1244555666666 678888878776553
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=98.38 E-value=1.9e-06 Score=75.26 Aligned_cols=84 Identities=12% Similarity=0.168 Sum_probs=61.4
Q ss_pred CCCeEEEEcccHHHHH-HHHHHHhC-CCCCCCcEE-EEeCCCHHHHHHHHHc-CceeccCchhhcc--CCCEEEEeeCcc
Q 024016 9 ESFILGFIGAGKMAES-IAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFESI-GVKVLSDNNAVVE--YSDVVVFSVKPQ 82 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~-~a~~L~~~-g~~~~~~v~-v~~~r~~~~~~~l~~~-g~~~~~~~~~~~~--~aDiIil~v~~~ 82 (274)
+++||||||+|.||.. .+..+.+. ++ +|. ++ ++++++.. .+. ++..++|..++++ +.|+|++|+|+.
T Consensus 4 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~----~l~av~-d~~~~~~~--~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~ 76 (358)
T 3gdo_A 4 DTIKVGILGYGLSGSVFHGPLLDVLDEY----QISKIM-TSRTEEVK--RDFPDAEVVHELEEITNDPAIELVIVTTPSG 76 (358)
T ss_dssp TCEEEEEECCSHHHHHTTHHHHTTCTTE----EEEEEE-CSCHHHHH--HHCTTSEEESSTHHHHTCTTCCEEEECSCTT
T ss_pred CcceEEEEccCHHHHHHHHHHHhhCCCe----EEEEEE-cCCHHHHH--hhCCCCceECCHHHHhcCCCCCEEEEcCCcH
Confidence 5679999999999997 67666554 44 665 55 99987632 233 6778889999887 689999999988
Q ss_pred cHHHHHHHhccccCCCCEEE
Q 024016 83 VVKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vi 102 (274)
...++..... ..|+-|+
T Consensus 77 ~H~~~~~~al---~aGkhVl 93 (358)
T 3gdo_A 77 LHYEHTMACI---QAGKHVV 93 (358)
T ss_dssp THHHHHHHHH---HTTCEEE
T ss_pred HHHHHHHHHH---HcCCeEE
Confidence 7766665443 3455555
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.38 E-value=3e-07 Score=77.13 Aligned_cols=102 Identities=17% Similarity=0.146 Sum_probs=69.0
Q ss_pred CCCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH-----HHHHH--cCceeccCchhhccCCCEEEEe
Q 024016 7 PAESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR-----DAFES--IGVKVLSDNNAVVEYSDVVVFS 78 (274)
Q Consensus 7 ~~~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~-----~~l~~--~g~~~~~~~~~~~~~aDiIil~ 78 (274)
-|+++||+|+| +|+||+.+++.+.+... .++...++|++... ..+.. .|+.+.++..+++.++|+||-+
T Consensus 4 ~M~mikV~V~Ga~G~MG~~i~~~l~~~~~---~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~~DVVIDf 80 (272)
T 4f3y_A 4 SMSSMKIAIAGASGRMGRMLIEAVLAAPD---ATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDF 80 (272)
T ss_dssp --CCEEEEESSTTSHHHHHHHHHHHHCTT---EEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHHCSEEEEC
T ss_pred CccccEEEEECCCCHHHHHHHHHHHhCCC---CEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhcCCCEEEEc
Confidence 36678999999 89999999999886532 15554338874321 11111 2566778888888899999999
Q ss_pred eCcccHHHHHHHhccccCCCCEEEEecCCCCHHHHH
Q 024016 79 VKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQ 114 (274)
Q Consensus 79 v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~ 114 (274)
++|+...+.+..... .|.-+|..+.|.+.+.++
T Consensus 81 T~p~a~~~~~~~al~---~G~~vVigTTG~s~~~~~ 113 (272)
T 4f3y_A 81 TLPEGTLVHLDAALR---HDVKLVIGTTGFSEPQKA 113 (272)
T ss_dssp SCHHHHHHHHHHHHH---HTCEEEECCCCCCHHHHH
T ss_pred CCHHHHHHHHHHHHH---cCCCEEEECCCCCHHHHH
Confidence 999887777765543 344566556677765443
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.38 E-value=1e-06 Score=79.16 Aligned_cols=113 Identities=12% Similarity=0.249 Sum_probs=76.1
Q ss_pred CCeEEEEcccHH-HHHHHHHHHhC--CCCCCCcEEEEeCCCH--HHHHHHHH--------c--C--ceeccCchhhccCC
Q 024016 10 SFILGFIGAGKM-AESIAKGVAKS--GVLPPDRICTAVHSNL--KRRDAFES--------I--G--VKVLSDNNAVVEYS 72 (274)
Q Consensus 10 ~~~IgiIG~G~m-G~~~a~~L~~~--g~~~~~~v~v~~~r~~--~~~~~l~~--------~--g--~~~~~~~~~~~~~a 72 (274)
.+||+|||+|.+ |.+++..|+++ +. +..+|.+| |+++ ++++.... . . +..++|..+++++|
T Consensus 7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l-~~~ev~L~-Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~gA 84 (450)
T 1s6y_A 7 RLKIATIGGGSSYTPELVEGLIKRYHEL-PVGELWLV-DIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGA 84 (450)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTTC-CEEEEEEE-CCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCCC-CCCEEEEE-EcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCCC
Confidence 469999999999 88888888873 22 22389999 9999 77654211 1 2 23345666889999
Q ss_pred CEEEEeeCccc------------------------------------HHHHHHHhccccCCCCEEEEecCCCCH--HHHH
Q 024016 73 DVVVFSVKPQV------------------------------------VKDVAMQIRPLLSRKKLLVSVAAGVKL--KDLQ 114 (274)
Q Consensus 73 DiIil~v~~~~------------------------------------~~~v~~~i~~~l~~~~~vis~~~g~~~--~~l~ 114 (274)
|+||++++... +.++++.+..+ .|+..++..++++.. ..+.
T Consensus 85 D~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~-~P~a~ii~~tNPvdivT~a~~ 163 (450)
T 1s6y_A 85 DFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEEL-CPDAWLINFTNPAGMVTEAVL 163 (450)
T ss_dssp SEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHHHHHHHHH
T ss_pred CEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHH-CCCeEEEEeCCcHHHHHHHHH
Confidence 99999998532 34444555554 588888888887653 3444
Q ss_pred HhhCCCceEEE
Q 024016 115 EWTGHSRFIRV 125 (274)
Q Consensus 115 ~~~~~~~~~~~ 125 (274)
+..|..++++.
T Consensus 164 k~~p~~rViG~ 174 (450)
T 1s6y_A 164 RYTKQEKVVGL 174 (450)
T ss_dssp HHCCCCCEEEC
T ss_pred HhCCCCCEEEe
Confidence 55554466654
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=7e-07 Score=78.65 Aligned_cols=93 Identities=17% Similarity=0.242 Sum_probs=67.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCcee------ccCchhhccCCCEEEEeeC
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKV------LSDNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~------~~~~~~~~~~aDiIil~v~ 80 (274)
...++|+|||+|.+|..+++.+...|. +|+++ +|++++.+.+.+ .|... ..+..+.+.++|+||.|++
T Consensus 166 l~g~~V~ViG~G~iG~~~a~~a~~~Ga----~V~~~-d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~ 240 (377)
T 2vhw_A 166 VEPADVVVIGAGTAGYNAARIANGMGA----TVTVL-DINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVL 240 (377)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-eCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCC
Confidence 345799999999999999999999998 99999 999998887776 55432 2234566778999999884
Q ss_pred -ccc-HHHH-HHHhccccCCCCEEEEec
Q 024016 81 -PQV-VKDV-AMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 81 -~~~-~~~v-~~~i~~~l~~~~~vis~~ 105 (274)
|.. ...+ ..+..+.++++.++|++.
T Consensus 241 ~p~~~t~~li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 241 VPGAKAPKLVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp CTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred cCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence 321 1111 122334467888888775
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.36 E-value=4.8e-07 Score=78.71 Aligned_cols=96 Identities=16% Similarity=0.126 Sum_probs=65.6
Q ss_pred CCeEEEEcccHHHHHHHHH-HHhC--CCCCCCcEE-EEeCCCHHHHHHHHH-cCceeccCchhhccC--CCEEEEeeCcc
Q 024016 10 SFILGFIGAGKMAESIAKG-VAKS--GVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVEY--SDVVVFSVKPQ 82 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~-L~~~--g~~~~~~v~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~--aDiIil~v~~~ 82 (274)
++||||||+|.||..+... ++.. ++ ++. ++ +|++++.+...+ .++..++|..+++++ .|+|++|+|+.
T Consensus 2 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~----~l~av~-d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~ 76 (345)
T 3f4l_A 2 VINCAFIGFGKSTTRYHLPYVLNRKDSW----HVAHIF-RRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHAD 76 (345)
T ss_dssp CEEEEEECCSHHHHHHTHHHHTTCTTTE----EEEEEE-CSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCGG
T ss_pred ceEEEEEecCHHHHHHHHHHHHhcCCCe----EEEEEE-cCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCChH
Confidence 4699999999999964444 4332 34 666 66 999887754444 477888899998875 89999999988
Q ss_pred cHHHHHHHhccccCCCCEEEEecCCC--CHHHHH
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSVAAGV--KLKDLQ 114 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~~~g~--~~~~l~ 114 (274)
...++..... ..|+-|+. -+++ +.+...
T Consensus 77 ~h~~~~~~al---~aGk~Vl~-EKP~a~~~~e~~ 106 (345)
T 3f4l_A 77 SHFEYAKRAL---EAGKNVLV-EKPFTPTLAQAK 106 (345)
T ss_dssp GHHHHHHHHH---HTTCEEEE-CSSSCSSHHHHH
T ss_pred HHHHHHHHHH---HcCCcEEE-eCCCCCCHHHHH
Confidence 7766665443 35555553 3433 444433
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.36 E-value=6e-07 Score=78.75 Aligned_cols=88 Identities=14% Similarity=0.133 Sum_probs=63.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee---ccC---chhhccCCCEEEEeeCcc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV---LSD---NNAVVEYSDVVVFSVKPQ 82 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~---~~~---~~~~~~~aDiIil~v~~~ 82 (274)
++|||.|||+|.+|+.+++.|.+ .+ +|+++ +|+.++++.+.+..-.+ ..+ ..++++++|+||.|+|+.
T Consensus 15 ~~mkilvlGaG~vG~~~~~~L~~-~~----~v~~~-~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~ 88 (365)
T 3abi_A 15 RHMKVLILGAGNIGRAIAWDLKD-EF----DVYIG-DVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGF 88 (365)
T ss_dssp -CCEEEEECCSHHHHHHHHHHTT-TS----EEEEE-ESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGG
T ss_pred CccEEEEECCCHHHHHHHHHHhc-CC----CeEEE-EcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCc
Confidence 45899999999999999998865 45 89999 99999988876532111 122 345678999999999998
Q ss_pred cHHHHHHHhccccCCCCEEEEec
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~~ 105 (274)
.-..+.+... ..|+-+++++
T Consensus 89 ~~~~v~~~~~---~~g~~yvD~s 108 (365)
T 3abi_A 89 LGFKSIKAAI---KSKVDMVDVS 108 (365)
T ss_dssp GHHHHHHHHH---HHTCEEEECC
T ss_pred ccchHHHHHH---hcCcceEeee
Confidence 7666655432 3456677664
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=98.36 E-value=5.4e-07 Score=76.05 Aligned_cols=92 Identities=15% Similarity=0.242 Sum_probs=65.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cC----ceeccCchhhccCCCEEEEeeCcc
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG----VKVLSDNNAVVEYSDVVVFSVKPQ 82 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g----~~~~~~~~~~~~~aDiIil~v~~~ 82 (274)
.+.+++.|+|+|.+|.+++..|.+.|. .+|+++ +|++++++.+.+ .+ +... +..++..++|+||-|||..
T Consensus 124 l~~k~vlvlGaGg~g~aia~~L~~~G~---~~v~v~-~R~~~~a~~la~~~~~~~~~~~~-~~~~l~~~aDiIInaTp~g 198 (281)
T 3o8q_A 124 LKGATILLIGAGGAARGVLKPLLDQQP---ASITVT-NRTFAKAEQLAELVAAYGEVKAQ-AFEQLKQSYDVIINSTSAS 198 (281)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTCC---SEEEEE-ESSHHHHHHHHHHHGGGSCEEEE-EGGGCCSCEEEEEECSCCC
T ss_pred ccCCEEEEECchHHHHHHHHHHHhcCC---CeEEEE-ECCHHHHHHHHHHhhccCCeeEe-eHHHhcCCCCEEEEcCcCC
Confidence 456799999999999999999999994 289999 999999888776 22 3332 3445457899999999866
Q ss_pred cHHHHHHHh-ccccCCCCEEEEec
Q 024016 83 VVKDVAMQI-RPLLSRKKLLVSVA 105 (274)
Q Consensus 83 ~~~~v~~~i-~~~l~~~~~vis~~ 105 (274)
...+.. .+ ...++++.+|+++.
T Consensus 199 m~~~~~-~l~~~~l~~~~~V~Dlv 221 (281)
T 3o8q_A 199 LDGELP-AIDPVIFSSRSVCYDMM 221 (281)
T ss_dssp C----C-SCCGGGEEEEEEEEESC
T ss_pred CCCCCC-CCCHHHhCcCCEEEEec
Confidence 432210 11 12356677777765
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=4.4e-07 Score=76.36 Aligned_cols=71 Identities=10% Similarity=0.180 Sum_probs=54.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c----CceeccCchhhcc-CCCEEEEeeCc
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I----GVKVLSDNNAVVE-YSDVVVFSVKP 81 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~----g~~~~~~~~~~~~-~aDiIil~v~~ 81 (274)
.+.+++.|+|+|.||.+++..|.+.|. +|++| +|++++++.+.+ . .+.. .+..++.+ ++|+||.|+|.
T Consensus 117 ~~~~~vlvlGaGg~g~a~a~~L~~~G~----~v~v~-~R~~~~a~~l~~~~~~~~~~~~-~~~~~~~~~~~DivIn~t~~ 190 (272)
T 1p77_A 117 RPNQHVLILGAGGATKGVLLPLLQAQQ----NIVLA-NRTFSKTKELAERFQPYGNIQA-VSMDSIPLQTYDLVINATSA 190 (272)
T ss_dssp CTTCEEEEECCSHHHHTTHHHHHHTTC----EEEEE-ESSHHHHHHHHHHHGGGSCEEE-EEGGGCCCSCCSEEEECCCC
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHHccccCCeEE-eeHHHhccCCCCEEEECCCC
Confidence 356799999999999999999999997 99999 999999888875 2 2222 23334334 89999999986
Q ss_pred ccH
Q 024016 82 QVV 84 (274)
Q Consensus 82 ~~~ 84 (274)
...
T Consensus 191 ~~~ 193 (272)
T 1p77_A 191 GLS 193 (272)
T ss_dssp ---
T ss_pred CCC
Confidence 543
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=4.8e-07 Score=80.32 Aligned_cols=87 Identities=15% Similarity=0.222 Sum_probs=66.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceecc--------------------------
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLS-------------------------- 63 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~-------------------------- 63 (274)
..||+|||+|.+|...++.+...|. +|+++ ||++++.+.+.+.|.....
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~Ga----~V~v~-D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 246 (401)
T 1x13_A 172 PAKVMVIGAGVAGLAAIGAANSLGA----IVRAF-DTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEM 246 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHH
Confidence 5799999999999999999999998 89999 9999988888777765432
Q ss_pred -CchhhccCCCEEEEee--Cc----ccH-HHHHHHhccccCCCCEEEEec
Q 024016 64 -DNNAVVEYSDVVVFSV--KP----QVV-KDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 64 -~~~~~~~~aDiIil~v--~~----~~~-~~v~~~i~~~l~~~~~vis~~ 105 (274)
+..+.+..+|+||.|+ |. ..+ ++.+. .++++.+||++.
T Consensus 247 ~~l~e~~~~aDvVI~~~~~pg~~ap~li~~~~l~----~mk~g~vIVdva 292 (401)
T 1x13_A 247 ELFAAQAKEVDIIVTTALIPGKPAPKLITREMVD----SMKAGSVIVDLA 292 (401)
T ss_dssp HHHHHHHHHCSEEEECCCCTTSCCCCCBCHHHHH----TSCTTCEEEETT
T ss_pred HHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHh----cCCCCcEEEEEc
Confidence 2345667899999994 41 112 33333 467888999875
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=9.5e-07 Score=73.86 Aligned_cols=90 Identities=16% Similarity=0.202 Sum_probs=65.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHH-HHH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVK-DVA 88 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~-~v~ 88 (274)
.+++.|||+|.||.+++..|.+.|. +|+++ +|++++++.+.+.++... +..++ .++|+||-|+|..... ..+
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G~----~v~V~-nRt~~ka~~la~~~~~~~-~~~~l-~~~DiVInaTp~Gm~~~~~l 190 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQGL----QVSVL-NRSSRGLDFFQRLGCDCF-MEPPK-SAFDLIINATSASLHNELPL 190 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCTTHHHHHHHTCEEE-SSCCS-SCCSEEEECCTTCCCCSCSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHCCCeEe-cHHHh-ccCCEEEEcccCCCCCCCCC
Confidence 5689999999999999999999997 99999 999999988886666543 33343 3899999999854211 001
Q ss_pred --HHhccccCCCCEEEEecC
Q 024016 89 --MQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 89 --~~i~~~l~~~~~vis~~~ 106 (274)
+.+...++++.+++++.-
T Consensus 191 ~~~~l~~~l~~~~~v~D~vY 210 (269)
T 3phh_A 191 NKEVLKGYFKEGKLAYDLAY 210 (269)
T ss_dssp CHHHHHHHHHHCSEEEESCC
T ss_pred ChHHHHhhCCCCCEEEEeCC
Confidence 111113456788888753
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=98.32 E-value=4.4e-06 Score=71.99 Aligned_cols=98 Identities=13% Similarity=0.159 Sum_probs=68.1
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH----HHHc-----C--ceeccCchhhccCCCEE
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FESI-----G--VKVLSDNNAVVEYSDVV 75 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~----l~~~-----g--~~~~~~~~~~~~~aDiI 75 (274)
.+..+||+|||+|.||.+++..|+..|+. .++.++ |+++++++. +... . +....+. +.+++||+|
T Consensus 16 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~--~el~L~-Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~-~~~~~aDiV 91 (331)
T 4aj2_A 16 QVPQNKITVVGVGAVGMACAISILMKDLA--DELALV-DVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDY-SVTANSKLV 91 (331)
T ss_dssp -CCSSEEEEECCSHHHHHHHHHHHHTTCC--SEEEEE-CSCHHHHHHHHHHHHHTGGGCSCCEEEECSSG-GGGTTEEEE
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhCCCC--ceEEEE-eCChHHHHHHHHhhhhhhhccCCCeEEEcCCH-HHhCCCCEE
Confidence 45668999999999999999999998863 379999 999877654 2221 1 1223444 568999999
Q ss_pred EEee--C--cc------------cHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 76 VFSV--K--PQ------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 76 il~v--~--~~------------~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
|++. | |. .++++.+.+..+ .|+..++..++++.
T Consensus 92 vi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~-~p~a~vlvvtNPvd 140 (331)
T 4aj2_A 92 IITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKY-SPQCKLLIVSNPVD 140 (331)
T ss_dssp EECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHH
T ss_pred EEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecChHH
Confidence 9986 2 21 133444555555 67788888877654
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.32 E-value=3.8e-06 Score=72.01 Aligned_cols=96 Identities=19% Similarity=0.234 Sum_probs=64.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC--HHHHHHH----HH------cCceec-cCchhhccCCCEE
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN--LKRRDAF----ES------IGVKVL-SDNNAVVEYSDVV 75 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~--~~~~~~l----~~------~g~~~~-~~~~~~~~~aDiI 75 (274)
+.+||+|||+|.||.+++..|...|+ . +|.++ |++ +++.+.. .. ....+. ++..+.+++||+|
T Consensus 7 ~~~kv~ViGaG~vG~~ia~~l~~~g~-~--~v~l~-D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~~~aDvV 82 (315)
T 3tl2_A 7 KRKKVSVIGAGFTGATTAFLLAQKEL-A--DVVLV-DIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVV 82 (315)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-C--EEEEE-CCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-C--eEEEE-eccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHhCCCCEE
Confidence 45799999999999999999999886 3 89999 999 4443321 11 122222 2335678999999
Q ss_pred EEeeC----cc------------cHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 76 VFSVK----PQ------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 76 il~v~----~~------------~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
|++.. |. .++++.+.+..+ .|+..++..+++..
T Consensus 83 Iiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~vlvvsNPvd 131 (315)
T 3tl2_A 83 VITAGIARKPGMSRDDLVATNSKIMKSITRDIAKH-SPNAIIVVLTNPVD 131 (315)
T ss_dssp EECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSSHH
T ss_pred EEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEECCChHH
Confidence 99972 21 123444455554 57778887777654
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=98.31 E-value=1.8e-06 Score=72.51 Aligned_cols=91 Identities=10% Similarity=0.182 Sum_probs=62.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cC----ceeccCchhhc-cCCCEEEEeeCc
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG----VKVLSDNNAVV-EYSDVVVFSVKP 81 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g----~~~~~~~~~~~-~~aDiIil~v~~ 81 (274)
++.+++.|+|+|.||.+++..|.+.|. +|+++ +|++++++.+.+ .+ +.. .+..++. .++|+||.|++.
T Consensus 117 l~~k~vlViGaGg~g~a~a~~L~~~G~----~V~v~-~R~~~~~~~la~~~~~~~~~~~-~~~~~~~~~~~DivVn~t~~ 190 (271)
T 1nyt_A 117 RPGLRILLIGAGGASRGVLLPLLSLDC----AVTIT-NRTVSRAEELAKLFAHTGSIQA-LSMDELEGHEFDLIINATSS 190 (271)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSHHHHHHHHHHTGGGSSEEE-CCSGGGTTCCCSEEEECCSC
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHcCC----EEEEE-ECCHHHHHHHHHHhhccCCeeE-ecHHHhccCCCCEEEECCCC
Confidence 356799999999999999999999998 99999 999999888775 22 222 2333333 489999999975
Q ss_pred ccHHHHHHHhc-cccCCCCEEEEec
Q 024016 82 QVVKDVAMQIR-PLLSRKKLLVSVA 105 (274)
Q Consensus 82 ~~~~~v~~~i~-~~l~~~~~vis~~ 105 (274)
....++ ..+. ..++++.+++++.
T Consensus 191 ~~~~~~-~~i~~~~l~~~~~v~D~~ 214 (271)
T 1nyt_A 191 GISGDI-PAIPSSLIHPGIYCYDMF 214 (271)
T ss_dssp GGGTCC-CCCCGGGCCTTCEEEESC
T ss_pred CCCCCC-CCCCHHHcCCCCEEEEec
Confidence 433211 0111 1245566666653
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.3e-06 Score=74.01 Aligned_cols=94 Identities=15% Similarity=0.200 Sum_probs=69.3
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEE-EEeCCCHHHHHHHHHcCceeccCchhhcc--CCCEEEEeeCcccH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFESIGVKVLSDNNAVVE--YSDVVVFSVKPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~-v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~aDiIil~v~~~~~ 84 (274)
+.+||+|+|+ |+||...++++.+.|+ ++. .. |+.... ++ ..|+.++.+..++.+ ++|++++++|++..
T Consensus 6 ~~~rVaViG~sG~~G~~~~~~l~~~g~----~~V~~V-~p~~~g-~~--~~G~~vy~sl~el~~~~~~D~viI~tP~~~~ 77 (288)
T 2nu8_A 6 KNTKVICQGFTGSQGTFHSEQAIAYGT----KMVGGV-TPGKGG-TT--HLGLPVFNTVREAVAATGATASVIYVPAPFC 77 (288)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTC----EEEEEE-CTTCTT-CE--ETTEEEESSHHHHHHHHCCCEEEECCCGGGH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC----eEEEEe-CCCccc-ce--eCCeeccCCHHHHhhcCCCCEEEEecCHHHH
Confidence 4579999998 9999999999999887 633 44 543210 11 268888888888887 89999999999999
Q ss_pred HHHHHHhccccCCCCEEEEecCCCCHHH
Q 024016 85 KDVAMQIRPLLSRKKLLVSVAAGVKLKD 112 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~~g~~~~~ 112 (274)
.+++.+.... .. +.+|-.+.|++.+.
T Consensus 78 ~~~~~ea~~~-Gi-~~iVi~t~G~~~~~ 103 (288)
T 2nu8_A 78 KDSILEAIDA-GI-KLIITITEGIPTLD 103 (288)
T ss_dssp HHHHHHHHHT-TC-SEEEECCCCCCHHH
T ss_pred HHHHHHHHHC-CC-CEEEEECCCCCHHH
Confidence 9988776543 12 34455667887654
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=4.7e-06 Score=74.14 Aligned_cols=93 Identities=12% Similarity=0.196 Sum_probs=67.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec-cCc--h----hh-ccCCCEEEEeeC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDN--N----AV-VEYSDVVVFSVK 80 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~-~~~--~----~~-~~~aDiIil~v~ 80 (274)
..++|.|+|+|++|..+++.|.+.|+ +|+++ ++++++++.+.+.|..+. .|. . ++ ++++|+||++++
T Consensus 3 ~~~~viIiG~Gr~G~~va~~L~~~g~----~vvvI-d~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~ 77 (413)
T 3l9w_A 3 HGMRVIIAGFGRFGQITGRLLLSSGV----KMVVL-DHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAID 77 (413)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTC----CEEEE-ECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC----CEEEE-ECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCC
Confidence 34689999999999999999999999 99999 999999999888776432 221 1 12 578999999998
Q ss_pred cccHHHHHHHhccccCCCCEEEEecC
Q 024016 81 PQVVKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 81 ~~~~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
++.....+-.....+.|+..||.-..
T Consensus 78 ~~~~n~~i~~~ar~~~p~~~Iiara~ 103 (413)
T 3l9w_A 78 DPQTNLQLTEMVKEHFPHLQIIARAR 103 (413)
T ss_dssp SHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred ChHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 76544333333333456544554433
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.7e-06 Score=75.82 Aligned_cols=85 Identities=13% Similarity=0.094 Sum_probs=61.9
Q ss_pred CCCCeEEEEcccHHHHH-HHHHHHhC-CCCCCCcEE-EEeCCCHHHHHHHHHc-CceeccCchhhccC--CCEEEEeeCc
Q 024016 8 AESFILGFIGAGKMAES-IAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFESI-GVKVLSDNNAVVEY--SDVVVFSVKP 81 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~-~a~~L~~~-g~~~~~~v~-v~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~--aDiIil~v~~ 81 (274)
|+++||||||+|.||.. .+..|.+. ++ +|. ++ ++++++.. .+. ++..++|.++++++ .|+|++|+|+
T Consensus 3 ~~~~rvgiiG~G~~g~~~~~~~l~~~~~~----~l~av~-d~~~~~~~--~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~ 75 (362)
T 3fhl_A 3 LEIIKTGLAAFGMSGQVFHAPFISTNPHF----ELYKIV-ERSKELSK--ERYPQASIVRSFKELTEDPEIDLIVVNTPD 75 (362)
T ss_dssp CCCEEEEESCCSHHHHHTTHHHHHHCTTE----EEEEEE-CSSCCGGG--TTCTTSEEESCSHHHHTCTTCCEEEECSCG
T ss_pred CCceEEEEECCCHHHHHHHHHHHhhCCCe----EEEEEE-cCCHHHHH--HhCCCCceECCHHHHhcCCCCCEEEEeCCh
Confidence 45679999999999997 67777664 44 665 55 99987632 224 67788899998876 8999999998
Q ss_pred ccHHHHHHHhccccCCCCEEE
Q 024016 82 QVVKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 82 ~~~~~v~~~i~~~l~~~~~vi 102 (274)
....++..... ..|+-|+
T Consensus 76 ~~H~~~~~~al---~aGkhVl 93 (362)
T 3fhl_A 76 NTHYEYAGMAL---EAGKNVV 93 (362)
T ss_dssp GGHHHHHHHHH---HTTCEEE
T ss_pred HHHHHHHHHHH---HCCCeEE
Confidence 87766665443 3455454
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.7e-06 Score=72.81 Aligned_cols=92 Identities=16% Similarity=0.266 Sum_probs=65.4
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH----H------cCcee--ccCchhhccCCCEEEEee
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S------IGVKV--LSDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~----~------~g~~~--~~~~~~~~~~aDiIil~v 79 (274)
||+|||+|.||.+++..|...|+ .+|.++ |+++++++... . ...++ +.+. +.+++||+||++.
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~~l---~el~L~-Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~a 75 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMRGY---DDLLLI-ARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTA 75 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTC---SCEEEE-CSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECC
T ss_pred CEEEECcCHHHHHHHHHHHhCCC---CEEEEE-cCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeC
Confidence 79999999999999999988876 269999 99987664321 1 13223 2444 6789999999996
Q ss_pred Cccc----------------HHHHHHHhccccCCCCEEEEecCCCC
Q 024016 80 KPQV----------------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 80 ~~~~----------------~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
+... ++++.+++..+ .|+..++..++++.
T Consensus 76 g~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNPv~ 120 (308)
T 2d4a_B 76 GIGRKPGMTREQLLEANANTMADLAEKIKAY-AKDAIVVITTNPVD 120 (308)
T ss_dssp SCCCCSSCCTHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSSHH
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeCCchH
Confidence 4221 56666667665 37777776767544
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.27 E-value=2.7e-06 Score=71.43 Aligned_cols=92 Identities=15% Similarity=0.240 Sum_probs=65.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cC---ceeccCchhhc-cCCCEEEEeeCcc
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG---VKVLSDNNAVV-EYSDVVVFSVKPQ 82 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g---~~~~~~~~~~~-~~aDiIil~v~~~ 82 (274)
.+.+++.|+|+|.+|.+++..|.+.|. .+|+++ +|++++++.+.+ .+ +... +..++. .++|+||-|||..
T Consensus 118 l~~k~~lvlGaGg~~~aia~~L~~~G~---~~v~i~-~R~~~~a~~la~~~~~~~~~~~-~~~~l~~~~~DivInaTp~g 192 (272)
T 3pwz_A 118 LRNRRVLLLGAGGAVRGALLPFLQAGP---SELVIA-NRDMAKALALRNELDHSRLRIS-RYEALEGQSFDIVVNATSAS 192 (272)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHTCC---SEEEEE-CSCHHHHHHHHHHHCCTTEEEE-CSGGGTTCCCSEEEECSSGG
T ss_pred ccCCEEEEECccHHHHHHHHHHHHcCC---CEEEEE-eCCHHHHHHHHHHhccCCeeEe-eHHHhcccCCCEEEECCCCC
Confidence 456799999999999999999999994 289999 999999988876 22 3332 233332 6899999999865
Q ss_pred cHHHHHHHh-ccccCCCCEEEEec
Q 024016 83 VVKDVAMQI-RPLLSRKKLLVSVA 105 (274)
Q Consensus 83 ~~~~v~~~i-~~~l~~~~~vis~~ 105 (274)
...+. ..+ ...++++.+++++.
T Consensus 193 m~~~~-~~i~~~~l~~~~~V~Dlv 215 (272)
T 3pwz_A 193 LTADL-PPLPADVLGEAALAYELA 215 (272)
T ss_dssp GGTCC-CCCCGGGGTTCSEEEESS
T ss_pred CCCCC-CCCCHHHhCcCCEEEEee
Confidence 32110 001 12467788888775
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=4e-07 Score=73.65 Aligned_cols=80 Identities=15% Similarity=0.175 Sum_probs=53.8
Q ss_pred CCeEEEEcccHHHHHHHHH--HHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCcccHHH
Q 024016 10 SFILGFIGAGKMAESIAKG--VAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~--L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~~~~~ 86 (274)
.++|+|||+|++|..+++. +...|+ ++..++|+++++...... .++...++..+++++.|++++|+|+....+
T Consensus 85 ~~rV~IIGAG~~G~~La~~~~~~~~g~----~iVg~~D~dp~k~g~~i~gv~V~~~~dl~eli~~~D~ViIAvPs~~~~e 160 (215)
T 2vt3_A 85 MTDVILIGVGNLGTAFLHYNFTKNNNT----KISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDESVAILTVPAVAAQS 160 (215)
T ss_dssp --CEEEECCSHHHHHHHHCC------C----CEEEEEESCTTTTTCEETTEEEEEGGGHHHHCSSCCEEEECSCHHHHHH
T ss_pred CCEEEEEccCHHHHHHHHHHhcccCCc----EEEEEEeCCHHHHHhHhcCCeeechhhHHHHHHhCCEEEEecCchhHHH
Confidence 4689999999999999994 334566 665444999887643221 223344566777766699999999988778
Q ss_pred HHHHhcc
Q 024016 87 VAMQIRP 93 (274)
Q Consensus 87 v~~~i~~ 93 (274)
+...+..
T Consensus 161 i~~~l~~ 167 (215)
T 2vt3_A 161 ITDRLVA 167 (215)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776653
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.26 E-value=5.6e-06 Score=71.68 Aligned_cols=99 Identities=12% Similarity=0.147 Sum_probs=67.1
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH----HHH-----cCceeccCchhhccCCCEEE
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FES-----IGVKVLSDNNAVVEYSDVVV 76 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~----l~~-----~g~~~~~~~~~~~~~aDiIi 76 (274)
.|+++||+|||+ |.+|++++..++..|.. .+|.++ |+++++++. |.. ..+...++..+++++||+||
T Consensus 5 ~~~~~KV~ViGaaG~VG~~~a~~l~~~g~~--~evvLi-Di~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVv 81 (343)
T 3fi9_A 5 YLTEEKLTIVGAAGMIGSNMAQTAAMMRLT--PNLCLY-DPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIV 81 (343)
T ss_dssp CSCSSEEEEETTTSHHHHHHHHHHHHTTCC--SCEEEE-CSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEE
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHhcCCC--CEEEEE-eCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEE
Confidence 346789999998 99999999999998852 279999 999877653 333 12344456667889999999
Q ss_pred Eee--C--cc------------cHHHHHHHhccccCCCCE-EEEecCCCC
Q 024016 77 FSV--K--PQ------------VVKDVAMQIRPLLSRKKL-LVSVAAGVK 109 (274)
Q Consensus 77 l~v--~--~~------------~~~~v~~~i~~~l~~~~~-vis~~~g~~ 109 (274)
++. | |. .++++.+.+..+- |+.+ ++..++++.
T Consensus 82 itaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~-p~a~~vlvvsNPvd 130 (343)
T 3fi9_A 82 SSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYC-PDCKHVIIIFNPAD 130 (343)
T ss_dssp ECCC-------CHHHHHHHHHHHHHHHHHHHHHHC-TTCCEEEECSSSHH
T ss_pred EccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhc-cCcEEEEEecCchH
Confidence 986 2 21 1233334455443 6664 666666654
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=1.5e-06 Score=76.82 Aligned_cols=92 Identities=11% Similarity=0.158 Sum_probs=66.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec--cC----------------------
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL--SD---------------------- 64 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~--~~---------------------- 64 (274)
...||+|||+|.+|...++.+...|. +|+++ ||++++.+.+.+.|.... +.
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga----~V~~~-d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~ 245 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRLGA----VVMAT-DVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRK 245 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCSTTHHHHHHTTCEECCC-----------------------C
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHh
Confidence 45799999999999999999999998 89999 999988887777776543 11
Q ss_pred -----chhhccCCCEEEEee--CcccHHHHH-HHhccccCCCCEEEEec
Q 024016 65 -----NNAVVEYSDVVVFSV--KPQVVKDVA-MQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 65 -----~~~~~~~aDiIil~v--~~~~~~~v~-~~i~~~l~~~~~vis~~ 105 (274)
..+.+.++|+||.|+ |....+.++ .+....++++.+||++.
T Consensus 246 ~~~~~l~~~~~~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva 294 (384)
T 1l7d_A 246 KQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA 294 (384)
T ss_dssp CHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred hhHHHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEe
Confidence 345677899999998 311111111 22233467888888775
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.4e-06 Score=76.74 Aligned_cols=102 Identities=14% Similarity=0.173 Sum_probs=70.6
Q ss_pred CCCCeEEEEc-ccHHHHH-HH----HHHHhCCCCC---CCcE----EEEeCCCHHHHHHHHH-cCc-eeccCchhhccC-
Q 024016 8 AESFILGFIG-AGKMAES-IA----KGVAKSGVLP---PDRI----CTAVHSNLKRRDAFES-IGV-KVLSDNNAVVEY- 71 (274)
Q Consensus 8 ~~~~~IgiIG-~G~mG~~-~a----~~L~~~g~~~---~~~v----~v~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~~- 71 (274)
|+.+|||||| +|.||.. .+ ..+.+.+.+. ...+ .++ +|++++++.+.+ .|+ ..++|..+++++
T Consensus 4 ~~~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~-~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~ 82 (383)
T 3oqb_A 4 TQRLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILV-GRSAEKVEALAKRFNIARWTTDLDAALADK 82 (383)
T ss_dssp CEEEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEE-CSSSHHHHHHHHHTTCCCEESCHHHHHHCS
T ss_pred CceeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEE-cCCHHHHHHHHHHhCCCcccCCHHHHhcCC
Confidence 4567999999 9999998 66 7777655310 0011 377 999999988876 787 477888888764
Q ss_pred -CCEEEEeeCcccHHHHHHHhccccCCCCEEEEecCCC--CHHHHH
Q 024016 72 -SDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGV--KLKDLQ 114 (274)
Q Consensus 72 -aDiIil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~--~~~~l~ 114 (274)
.|+|++|+|+....++..... ..|+-|+ +-+++ +.+...
T Consensus 83 ~iD~V~i~tp~~~h~~~~~~al---~~Gk~V~-~EKP~a~~~~~~~ 124 (383)
T 3oqb_A 83 NDTMFFDAATTQARPGLLTQAI---NAGKHVY-CEKPIATNFEEAL 124 (383)
T ss_dssp SCCEEEECSCSSSSHHHHHHHH---TTTCEEE-ECSCSCSSHHHHH
T ss_pred CCCEEEECCCchHHHHHHHHHH---HCCCeEE-EcCCCCCCHHHHH
Confidence 899999999877666654433 4555555 44543 444433
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=3.7e-06 Score=73.41 Aligned_cols=70 Identities=19% Similarity=0.269 Sum_probs=56.8
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhcc-CCCEEEEeeCccc
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVE-YSDVVVFSVKPQV 83 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~-~aDiIil~v~~~~ 83 (274)
...++|+|+|+|+||..+++.|.+.|. +|+++ |+++++++.+.+ .|++.. +..++.. +||+++.|.....
T Consensus 171 L~GktV~V~G~G~VG~~~A~~L~~~Ga----kVvv~-D~~~~~l~~~a~~~ga~~v-~~~~ll~~~~DIvip~a~~~~ 242 (364)
T 1leh_A 171 LEGLAVSVQGLGNVAKALCKKLNTEGA----KLVVT-DVNKAAVSAAVAEEGADAV-APNAIYGVTCDIFAPCALGAV 242 (364)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHHHCCEEC-CGGGTTTCCCSEEEECSCSCC
T ss_pred CCcCEEEEECchHHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHHHcCCEEE-ChHHHhccCCcEeeccchHHH
Confidence 456899999999999999999999998 99999 999998887776 577655 3345444 8999999864443
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=2.5e-06 Score=75.77 Aligned_cols=70 Identities=23% Similarity=0.344 Sum_probs=56.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceec--cCchhhccCCCEEEEeeCcc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVL--SDNNAVVEYSDVVVFSVKPQ 82 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~--~~~~~~~~~aDiIil~v~~~ 82 (274)
..++|+|||+|.||..+++.|...|. .+|+++ +|++++++.+.+ .|+... .+..+.+.++|+||.|++..
T Consensus 166 ~g~~VlIiGaG~iG~~~a~~l~~~G~---~~V~v~-~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~~~ 238 (404)
T 1gpj_A 166 HDKTVLVVGAGEMGKTVAKSLVDRGV---RAVLVA-NRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAP 238 (404)
T ss_dssp TTCEEEEESCCHHHHHHHHHHHHHCC---SEEEEE-CSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSS
T ss_pred cCCEEEEEChHHHHHHHHHHHHHCCC---CEEEEE-eCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccCCC
Confidence 45799999999999999999998885 379999 999998866654 676542 34556678999999999743
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=2.1e-06 Score=74.37 Aligned_cols=86 Identities=14% Similarity=0.127 Sum_probs=59.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCc------------------eeccCchhhccC
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGV------------------KVLSDNNAVVEY 71 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~------------------~~~~~~~~~~~~ 71 (274)
+||||+|+|.||..+++.|.+... .++...++++++++..+.+ .|+ .+..+..++..+
T Consensus 3 irVgIiG~G~iG~~~~r~l~~~~~---~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~ 79 (334)
T 2czc_A 3 VKVGVNGYGTIGKRVAYAVTKQDD---MELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEK 79 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTT---EEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTT
T ss_pred cEEEEEeEhHHHHHHHHHHhcCCC---CEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccC
Confidence 699999999999999999987542 2565444888777665554 432 334566777779
Q ss_pred CCEEEEeeCcccHHHHHHHhccccCCCCEEE
Q 024016 72 SDVVVFSVKPQVVKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 72 aDiIil~v~~~~~~~v~~~i~~~l~~~~~vi 102 (274)
+|+|++|+|.....+..... +..|+.|+
T Consensus 80 vDvV~~aTp~~~h~~~a~~~---l~aGk~Vi 107 (334)
T 2czc_A 80 VDIIVDATPGGIGAKNKPLY---EKAGVKAI 107 (334)
T ss_dssp CSEEEECCSTTHHHHHHHHH---HHHTCEEE
T ss_pred CCEEEECCCccccHHHHHHH---HHcCCceE
Confidence 99999999987654444433 23345555
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=3e-06 Score=72.58 Aligned_cols=91 Identities=13% Similarity=0.174 Sum_probs=61.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHh-C-CCCCCCcEEEEeCCCHHH-HHHHHH-cCcee-ccCchhhc-----cCCCEEEEe
Q 024016 9 ESFILGFIGAGKMAESIAKGVAK-S-GVLPPDRICTAVHSNLKR-RDAFES-IGVKV-LSDNNAVV-----EYSDVVVFS 78 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~-~-g~~~~~~v~v~~~r~~~~-~~~l~~-~g~~~-~~~~~~~~-----~~aDiIil~ 78 (274)
+++||||||+|.+|..+++.|.+ . +. ++...+++++++ .+.+.+ .|+.. .++.++++ .+.|+||+|
T Consensus 3 ~~irVaIIG~G~iG~~~~~~l~~~~~~~----elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~a 78 (312)
T 1nvm_B 3 QKLKVAIIGSGNIGTDLMIKVLRNAKYL----EMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDA 78 (312)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHCSSE----EEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEEC
T ss_pred CCCEEEEEcCcHHHHHHHHHHHhhCcCe----EEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEEC
Confidence 45799999999999999999865 2 33 454333999877 555544 67653 34445553 357999999
Q ss_pred eCcccHHHHHHHhccccCCCCEEEEe
Q 024016 79 VKPQVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 79 v~~~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
+|++...+........ ++|+.|++.
T Consensus 79 tp~~~h~~~a~~al~a-~~Gk~Vi~e 103 (312)
T 1nvm_B 79 TSASAHVQNEALLRQA-KPGIRLIDL 103 (312)
T ss_dssp SCHHHHHHHHHHHHHH-CTTCEEEEC
T ss_pred CChHHHHHHHHHHHHh-CCCCEEEEc
Confidence 9977766666554322 237777764
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.19 E-value=3.3e-06 Score=74.16 Aligned_cols=93 Identities=18% Similarity=0.250 Sum_probs=65.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCcee------ccCchhhccCCCEEEEeeC
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKV------LSDNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~------~~~~~~~~~~aDiIil~v~ 80 (274)
...++|+|+|+|.+|..+++.+...|. +|+++ +|++++.+.+.+ .|..+ ..+..+.+.++|+||.|++
T Consensus 164 l~~~~V~ViGaG~iG~~~a~~l~~~Ga----~V~~~-d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g 238 (369)
T 2eez_A 164 VAPASVVILGGGTVGTNAAKIALGMGA----QVTIL-DVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVL 238 (369)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCC
Confidence 345799999999999999999999998 99999 999998877765 55432 1233456778999999986
Q ss_pred ccc--HHHH-HHHhccccCCCCEEEEec
Q 024016 81 PQV--VKDV-AMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 81 ~~~--~~~v-~~~i~~~l~~~~~vis~~ 105 (274)
... ...+ ..+..+.++++..+|++.
T Consensus 239 ~~~~~~~~li~~~~l~~mk~gg~iV~v~ 266 (369)
T 2eez_A 239 VPGAKAPKLVTRDMLSLMKEGAVIVDVA 266 (369)
T ss_dssp -------CCSCHHHHTTSCTTCEEEECC
T ss_pred CCccccchhHHHHHHHhhcCCCEEEEEe
Confidence 332 1111 123334466788888764
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=1.1e-05 Score=68.22 Aligned_cols=96 Identities=19% Similarity=0.281 Sum_probs=65.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH----HHHH----cC--cee-ccCchhhccCCCEEEEee
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD----AFES----IG--VKV-LSDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~----~l~~----~g--~~~-~~~~~~~~~~aDiIil~v 79 (274)
|||+|||+|++|++++..|..++.+. ++.++ |.++++++ +|.. .+ ..+ ..+..+.+++||+|+++-
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~~~~~--el~L~-Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~~~aDvVvitA 77 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVD--EIALV-DIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTA 77 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCS--EEEEE-CSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGGTTCSEEEECC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCC--EEEEE-eCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHhCCCCEEEEec
Confidence 79999999999999999999888743 89999 99986543 2222 11 122 233346789999999986
Q ss_pred --C--ccc------------HHHHHHHhccccCCCCEEEEecCCCCH
Q 024016 80 --K--PQV------------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (274)
Q Consensus 80 --~--~~~------------~~~v~~~i~~~l~~~~~vis~~~g~~~ 110 (274)
| |.. ++++.+++..+ .|+.+++-+++++..
T Consensus 78 G~prkpGmtR~dLl~~Na~I~~~i~~~i~~~-~p~aivlvvsNPvd~ 123 (294)
T 2x0j_A 78 GLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVTNPMDV 123 (294)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECSSSHHH
T ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHHhc-CCceEEEEecCcchh
Confidence 2 322 23444455554 467788878787653
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=98.18 E-value=4.7e-06 Score=72.51 Aligned_cols=83 Identities=19% Similarity=0.209 Sum_probs=58.8
Q ss_pred CCeEEEEcccHHHH-HHHHHHHhC-CCCCCCcEE-EEeCCCHHHHHHHHH----cCceeccCchhhccC--CCEEEEeeC
Q 024016 10 SFILGFIGAGKMAE-SIAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES----IGVKVLSDNNAVVEY--SDVVVFSVK 80 (274)
Q Consensus 10 ~~~IgiIG~G~mG~-~~a~~L~~~-g~~~~~~v~-v~~~r~~~~~~~l~~----~g~~~~~~~~~~~~~--aDiIil~v~ 80 (274)
++||||||+|.||. ..+..+.+. ++ +|. ++ +|+ +.+.+.+ .++..+++.++++++ .|+|++|+|
T Consensus 2 ~~rvgiiG~G~~g~~~~~~~l~~~~~~----~l~av~-d~~--~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp 74 (349)
T 3i23_A 2 TVKMGFIGFGKSANRYHLPYVMIRETL----EVKTIF-DLH--VNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTP 74 (349)
T ss_dssp CEEEEEECCSHHHHHTTHHHHTTCTTE----EEEEEE-CTT--CCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSC
T ss_pred eeEEEEEccCHHHHHHHHHHHhhCCCe----EEEEEE-CCC--HHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCC
Confidence 36999999999999 456556553 34 665 56 888 3444433 477888899998875 899999999
Q ss_pred cccHHHHHHHhccccCCCCEEE
Q 024016 81 PQVVKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 81 ~~~~~~v~~~i~~~l~~~~~vi 102 (274)
+....++..... ..|+-|+
T Consensus 75 ~~~h~~~~~~al---~aGk~Vl 93 (349)
T 3i23_A 75 AHTHYDLAKQAI---LAGKSVI 93 (349)
T ss_dssp GGGHHHHHHHHH---HTTCEEE
T ss_pred cHHHHHHHHHHH---HcCCEEE
Confidence 887766665443 3455555
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.18 E-value=2.8e-06 Score=73.44 Aligned_cols=93 Identities=17% Similarity=0.264 Sum_probs=65.3
Q ss_pred CCCCeEEEEcccHHHH-HHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccC---CCEEEEeeCcc
Q 024016 8 AESFILGFIGAGKMAE-SIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEY---SDVVVFSVKPQ 82 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~-~~a~~L~~~-g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~---aDiIil~v~~~ 82 (274)
|+++||||||+|.||. ..+..|.+. +. +|...++|++++ .|+..++|..+++++ .|+|++|+|+.
T Consensus 23 M~~~rvgiiG~G~ig~~~~~~~l~~~~~~----~lvav~d~~~~~------~g~~~~~~~~~ll~~~~~vD~V~i~tp~~ 92 (330)
T 4ew6_A 23 MSPINLAIVGVGKIVRDQHLPSIAKNANF----KLVATASRHGTV------EGVNSYTTIEAMLDAEPSIDAVSLCMPPQ 92 (330)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHHHHCTTE----EEEEEECSSCCC------TTSEEESSHHHHHHHCTTCCEEEECSCHH
T ss_pred CCCceEEEEecCHHHHHHHHHHHHhCCCe----EEEEEEeCChhh------cCCCccCCHHHHHhCCCCCCEEEEeCCcH
Confidence 4567999999999998 788888875 33 655433998653 578888888888754 89999999988
Q ss_pred cHHHHHHHhccccCCCCEEEEecCC--CCHHHHH
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSVAAG--VKLKDLQ 114 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~~~g--~~~~~l~ 114 (274)
...++..... ..|+-|+ +-++ .+.+..+
T Consensus 93 ~H~~~~~~al---~aGkhVl-~EKP~a~~~~e~~ 122 (330)
T 4ew6_A 93 YRYEAAYKAL---VAGKHVF-LEKPPGATLSEVA 122 (330)
T ss_dssp HHHHHHHHHH---HTTCEEE-ECSSSCSSHHHHH
T ss_pred HHHHHHHHHH---HcCCcEE-EeCCCCCCHHHHH
Confidence 7766665543 3455555 3343 3444443
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=98.15 E-value=6e-06 Score=69.25 Aligned_cols=68 Identities=16% Similarity=0.241 Sum_probs=54.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCccc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQV 83 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~~ 83 (274)
.+++.|||+|.+|.+++..|.+.|. .+|+++ ||++++++.+.+ .+.....+.. ..++|+||-|||...
T Consensus 119 ~~~vlvlGaGgaarav~~~L~~~G~---~~i~v~-nRt~~ka~~la~~~~~~~~~~~~--~~~~DivInaTp~gm 187 (271)
T 1npy_A 119 NAKVIVHGSGGMAKAVVAAFKNSGF---EKLKIY-ARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIGM 187 (271)
T ss_dssp TSCEEEECSSTTHHHHHHHHHHTTC---CCEEEE-CSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTTC
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC---CEEEEE-eCCHHHHHHHHHHcCCccchhhh--cccCCEEEECCCCCc
Confidence 4689999999999999999999986 379999 999999988876 4544332222 467999999998654
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=2e-06 Score=72.29 Aligned_cols=99 Identities=20% Similarity=0.207 Sum_probs=65.8
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHh-CCCCCCCcEE-EEeCCCHHHH--HHHH------HcCceeccCchhhccCCCEEE
Q 024016 8 AESFILGFIGA-GKMAESIAKGVAK-SGVLPPDRIC-TAVHSNLKRR--DAFE------SIGVKVLSDNNAVVEYSDVVV 76 (274)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~~a~~L~~-~g~~~~~~v~-v~~~r~~~~~--~~l~------~~g~~~~~~~~~~~~~aDiIi 76 (274)
|++|||+|+|+ |+||+.+++.+.+ .++ ++. ++ ++++++. +.+. ..++.+.++..+++.++|+||
T Consensus 3 ~~~mkV~V~Ga~G~mG~~~~~~~~~~~~~----elva~~-d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~~~DvVI 77 (273)
T 1dih_A 3 DANIRVAIAGAGGRMGRQLIQAALALEGV----QLGAAL-EREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFI 77 (273)
T ss_dssp CCBEEEEETTTTSHHHHHHHHHHHHSTTE----ECCCEE-CCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEE
T ss_pred CCCcEEEEECCCCHHHHHHHHHHHhCCCC----EEEEEE-ecCchhhhhhhHHHHcCCCcCCceecCCHHHHhcCCCEEE
Confidence 34579999998 9999999998874 455 665 66 8876431 1111 134555677777788899999
Q ss_pred EeeCcccHHHHHHHhccccCCCCEEEEecCCCCHHHHH
Q 024016 77 FSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQ 114 (274)
Q Consensus 77 l~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~ 114 (274)
-+++|+...+.+..... .|.-+|.-+.|.+.+..+
T Consensus 78 Dft~p~~~~~~~~~a~~---~G~~vVigTtG~~~e~~~ 112 (273)
T 1dih_A 78 DFTRPEGTLNHLAFCRQ---HGKGMVIGTTGFDEAGKQ 112 (273)
T ss_dssp ECSCHHHHHHHHHHHHH---TTCEEEECCCCCCHHHHH
T ss_pred EcCChHHHHHHHHHHHh---CCCCEEEECCCCCHHHHH
Confidence 77777776666655432 344455544577766443
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=7.4e-06 Score=70.20 Aligned_cols=97 Identities=9% Similarity=0.044 Sum_probs=67.6
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--cCceeccCchhhc----------cCCCEEE
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--IGVKVLSDNNAVV----------EYSDVVV 76 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~--~g~~~~~~~~~~~----------~~aDiIi 76 (274)
++||||||+ |.||...+..+.+.+. ++...+++++++.. +.+ .+...+++.++++ .+.|+|+
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~~----~lvav~d~~~~~~~-~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~ 77 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLKAIKEVGG----VLVASLDPATNVGL-VDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLS 77 (312)
T ss_dssp CCEEEEECTTSSSHHHHHHHHHHTTC----EEEEEECSSCCCGG-GGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEE
T ss_pred ceEEEEECCChHHHHHHHHHHHhCCC----EEEEEEcCCHHHHH-HHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEE
Confidence 579999999 7899999999998775 65544399987742 333 3567778887776 5789999
Q ss_pred EeeCcccHHHHHHHhccccCCCCEEEEecCCC--CHHHHHH
Q 024016 77 FSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGV--KLKDLQE 115 (274)
Q Consensus 77 l~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~--~~~~l~~ 115 (274)
+|+|+....++..... ..|+-|+ +-+++ +.+..++
T Consensus 78 I~tP~~~H~~~~~~al---~aGkhVl-~EKPla~~~~ea~~ 114 (312)
T 3o9z_A 78 IASPNHLHYPQIRMAL---RLGANAL-SEKPLVLWPEEIAR 114 (312)
T ss_dssp ECSCGGGHHHHHHHHH---HTTCEEE-ECSSSCSCHHHHHH
T ss_pred ECCCchhhHHHHHHHH---HCCCeEE-EECCCCCCHHHHHH
Confidence 9999988777665543 3455555 33443 3444433
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.10 E-value=7.9e-06 Score=70.22 Aligned_cols=85 Identities=13% Similarity=0.050 Sum_probs=62.4
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--cCceeccCchhhc-----------cCCCEE
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--IGVKVLSDNNAVV-----------EYSDVV 75 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~--~g~~~~~~~~~~~-----------~~aDiI 75 (274)
++||||||+ |.||...+..|.+.+. ++...+++++++. .+.+ .+...+++.++++ .+.|+|
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~~----~lvav~d~~~~~~-~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V 77 (318)
T 3oa2_A 3 MKNFALIGAAGYIAPRHMRAIKDTGN----CLVSAYDINDSVG-IIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYV 77 (318)
T ss_dssp CCEEEEETTTSSSHHHHHHHHHHTTC----EEEEEECSSCCCG-GGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEE
T ss_pred ceEEEEECCCcHHHHHHHHHHHhCCC----EEEEEEcCCHHHH-HHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEE
Confidence 579999999 7899999999998776 6554449988764 2333 3667778887765 468999
Q ss_pred EEeeCcccHHHHHHHhccccCCCCEEE
Q 024016 76 VFSVKPQVVKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 76 il~v~~~~~~~v~~~i~~~l~~~~~vi 102 (274)
++|+|+....++..... ..|+-|+
T Consensus 78 ~I~tP~~~H~~~~~~al---~aGkhVl 101 (318)
T 3oa2_A 78 SICSPNYLHYPHIAAGL---RLGCDVI 101 (318)
T ss_dssp EECSCGGGHHHHHHHHH---HTTCEEE
T ss_pred EECCCcHHHHHHHHHHH---HCCCeEE
Confidence 99999988777665543 2444444
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=5.2e-06 Score=70.52 Aligned_cols=86 Identities=10% Similarity=0.061 Sum_probs=58.9
Q ss_pred CCCCCCCCeEEEEcccHHHHHHHHHHHh----CCCCCCCcEE-EEeCCCHHHHHHHHHcCceeccCchhhcc--CCCEEE
Q 024016 4 FPIPAESFILGFIGAGKMAESIAKGVAK----SGVLPPDRIC-TAVHSNLKRRDAFESIGVKVLSDNNAVVE--YSDVVV 76 (274)
Q Consensus 4 ~~~~~~~~~IgiIG~G~mG~~~a~~L~~----~g~~~~~~v~-v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~aDiIi 76 (274)
|+-+++++||||||+|.||...+..+.+ .+. ++. ++ +|++.. .+.|+. ..+..++++ +.|+|+
T Consensus 1 M~~~~~~~rvgiIG~G~iG~~~~~~l~~~~~~~~~----~lvav~-d~~~~a----~~~g~~-~~~~~ell~~~~vD~V~ 70 (294)
T 1lc0_A 1 MITNSGKFGVVVVGVGRAGSVRLRDLKDPRSAAFL----NLIGFV-SRRELG----SLDEVR-QISLEDALRSQEIDVAY 70 (294)
T ss_dssp CCCCCCSEEEEEECCSHHHHHHHHHHTSHHHHTTE----EEEEEE-CSSCCC----EETTEE-BCCHHHHHHCSSEEEEE
T ss_pred CCCCCCcceEEEEEEcHHHHHHHHHHhccccCCCE----EEEEEE-CchHHH----HHcCCC-CCCHHHHhcCCCCCEEE
Confidence 3445567899999999999999998865 233 554 55 876421 124655 467888776 689999
Q ss_pred EeeCcccHHHHHHHhccccCCCCEEE
Q 024016 77 FSVKPQVVKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 77 l~v~~~~~~~v~~~i~~~l~~~~~vi 102 (274)
+|+|+....+...... ..|+-|+
T Consensus 71 i~tp~~~H~~~~~~al---~aGkhVl 93 (294)
T 1lc0_A 71 ICSESSSHEDYIRQFL---QAGKHVL 93 (294)
T ss_dssp ECSCGGGHHHHHHHHH---HTTCEEE
T ss_pred EeCCcHhHHHHHHHHH---HCCCcEE
Confidence 9999887666655433 3455444
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=5.7e-06 Score=73.81 Aligned_cols=90 Identities=22% Similarity=0.297 Sum_probs=61.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c-C----------------------ceeccC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I-G----------------------VKVLSD 64 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~-g----------------------~~~~~~ 64 (274)
+..||||||+|.||+.++..+.+.. ..+|...++|++++++.+.+ . | ..+++|
T Consensus 22 k~IRVGIIGaG~iG~~~~~~l~~~~---~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D 98 (446)
T 3upl_A 22 KPIRIGLIGAGEMGTDIVTQVARMQ---GIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDD 98 (446)
T ss_dssp CCEEEEEECCSHHHHHHHHHHTTSS---SEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESC
T ss_pred CceEEEEECChHHHHHHHHHHhhCC---CcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECC
Confidence 4579999999999999998886532 12555444999998877654 2 4 346678
Q ss_pred chhhcc--CCCEEEEeeCcc-cHHHHHHHhccccCCCCEEEEe
Q 024016 65 NNAVVE--YSDVVVFSVKPQ-VVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 65 ~~~~~~--~aDiIil~v~~~-~~~~v~~~i~~~l~~~~~vis~ 104 (274)
..++++ +.|+|++|+|+. ...++... .+..|+-|+..
T Consensus 99 ~eeLL~d~dIDaVviaTp~p~~H~e~a~~---AL~AGKHVv~~ 138 (446)
T 3upl_A 99 NDLILSNPLIDVIIDATGIPEVGAETGIA---AIRNGKHLVMM 138 (446)
T ss_dssp HHHHHTCTTCCEEEECSCCHHHHHHHHHH---HHHTTCEEEEC
T ss_pred HHHHhcCCCCCEEEEcCCChHHHHHHHHH---HHHcCCcEEec
Confidence 888876 589999999753 32333322 23466667743
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=98.09 E-value=1e-05 Score=70.57 Aligned_cols=106 Identities=16% Similarity=0.294 Sum_probs=65.8
Q ss_pred CCCCCCCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----cC-----ceeccCchhhccC
Q 024016 3 AFPIPAESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IG-----VKVLSDNNAVVEY 71 (274)
Q Consensus 3 ~~~~~~~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-----~g-----~~~~~~~~~~~~~ 71 (274)
++..+|+++||+|+| .|.+|..+.+.|.+... .++...+++. +.-.++.. .+ +.+ .+ .+...+
T Consensus 9 ~~~~~M~~~kV~IiGAtG~iG~~llr~L~~~p~---~elvai~~~~-~~g~~~~~~~~~~~~~v~~dl~~-~~-~~~~~~ 82 (359)
T 1xyg_A 9 SSVKPEKDIRIGLLGASGYTGAEIVRLLANHPH---FQVTLMTADR-KAGQSMESVFPHLRAQKLPTLVS-VK-DADFST 82 (359)
T ss_dssp ------CCEEEEEECCSSHHHHHHHHHHHTCSS---EEEEEEBCST-TTTSCHHHHCGGGTTSCCCCCBC-GG-GCCGGG
T ss_pred cccccccCcEEEEECcCCHHHHHHHHHHHcCCC---cEEEEEeCch-hcCCCHHHhCchhcCccccccee-cc-hhHhcC
Confidence 455666678999999 89999999999987653 2666662433 22112221 12 112 12 344568
Q ss_pred CCEEEEeeCcccHHHHHHHhccccCCCCEEEEecCCCC---HHHHHHhhC
Q 024016 72 SDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVK---LKDLQEWTG 118 (274)
Q Consensus 72 aDiIil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~---~~~l~~~~~ 118 (274)
+|+||+|+|.....+..... ..|..+|+.++... .+..++|++
T Consensus 83 vDvVf~atp~~~s~~~a~~~----~aG~~VId~sa~~R~~~~~~y~~~y~ 128 (359)
T 1xyg_A 83 VDAVFCCLPHGTTQEIIKEL----PTALKIVDLSADFRLRNIAEYEEWYG 128 (359)
T ss_dssp CSEEEECCCTTTHHHHHHTS----CTTCEEEECSSTTTCSCHHHHHHHHS
T ss_pred CCEEEEcCCchhHHHHHHHH----hCCCEEEECCccccCCchhhhhhhhc
Confidence 99999999988877766544 46788999877653 355666665
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=98.09 E-value=3.9e-06 Score=70.72 Aligned_cols=97 Identities=14% Similarity=0.254 Sum_probs=67.1
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHH-----HHHHH---HcCceeccCchhhccCCCEEEEee
Q 024016 10 SFILGFIG-AGKMAESIAKGVAKS-GVLPPDRICTAVHSNLKR-----RDAFE---SIGVKVLSDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 10 ~~~IgiIG-~G~mG~~~a~~L~~~-g~~~~~~v~v~~~r~~~~-----~~~l~---~~g~~~~~~~~~~~~~aDiIil~v 79 (274)
++||+|+| +|+||+.+++.+.+. ++ ++...++|++.. +..+. ..|+.++++..+++.++|+||-++
T Consensus 21 ~irV~V~Ga~GrMGr~i~~~v~~~~~~----eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDFT 96 (288)
T 3ijp_A 21 SMRLTVVGANGRMGRELITAIQRRKDV----ELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDFS 96 (288)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTCSSE----EEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEECS
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCC----EEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEcC
Confidence 46999999 999999999998754 33 554333886421 11222 246777888888888999999999
Q ss_pred CcccHHHHHHHhccccCCCCEEEEecCCCCHHHH
Q 024016 80 KPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDL 113 (274)
Q Consensus 80 ~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l 113 (274)
+|+...+.+..... .|.-+|..+.|.+.+.+
T Consensus 97 ~p~a~~~~~~~~l~---~Gv~vViGTTG~~~e~~ 127 (288)
T 3ijp_A 97 QPQASVLYANYAAQ---KSLIHIIGTTGFSKTEE 127 (288)
T ss_dssp CHHHHHHHHHHHHH---HTCEEEECCCCCCHHHH
T ss_pred CHHHHHHHHHHHHH---cCCCEEEECCCCCHHHH
Confidence 88877666655433 34556665667776543
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=98.03 E-value=1e-05 Score=68.45 Aligned_cols=93 Identities=17% Similarity=0.189 Sum_probs=69.1
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEE-EEeCCCHHHHHHHHHcCceeccCchhhcc--CCCEEEEeeCcccH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFESIGVKVLSDNNAVVE--YSDVVVFSVKPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~-v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~aDiIil~v~~~~~ 84 (274)
+.+||+|+|+ |+||..+++++.+.|+ ++. .. ++.....+ ..|+.++.+..++.+ ++|++++++|++..
T Consensus 6 ~~~~VaVvGasG~~G~~~~~~l~~~g~----~~v~~V-nP~~~g~~---i~G~~vy~sl~el~~~~~~Dv~Ii~vp~~~~ 77 (288)
T 1oi7_A 6 RETRVLVQGITGREGQFHTKQMLTYGT----KIVAGV-TPGKGGME---VLGVPVYDTVKEAVAHHEVDASIIFVPAPAA 77 (288)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTC----EEEEEE-CTTCTTCE---ETTEEEESSHHHHHHHSCCSEEEECCCHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHcCC----eEEEEE-CCCCCCce---ECCEEeeCCHHHHhhcCCCCEEEEecCHHHH
Confidence 3579999998 9999999999999898 643 44 55431010 258888888888887 89999999999999
Q ss_pred HHHHHHhccccCCCCEEEEecCCCCHH
Q 024016 85 KDVAMQIRPLLSRKKLLVSVAAGVKLK 111 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~~g~~~~ 111 (274)
.+++.+....- . +.+|-.+.|++.+
T Consensus 78 ~~~~~ea~~~G-i-~~vVi~t~G~~~~ 102 (288)
T 1oi7_A 78 ADAALEAAHAG-I-PLIVLITEGIPTL 102 (288)
T ss_dssp HHHHHHHHHTT-C-SEEEECCSCCCHH
T ss_pred HHHHHHHHHCC-C-CEEEEECCCCCHH
Confidence 99988765431 2 3345466788764
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.02 E-value=2.3e-05 Score=70.02 Aligned_cols=91 Identities=21% Similarity=0.346 Sum_probs=63.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC--------CCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhcc--CCCEEEE
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKS--------GVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE--YSDVVVF 77 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~--------g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~aDiIil 77 (274)
|+..||||||+|.||+.+++.|.++ |. ..+|...++|++++.+.+. .+..++++..++++ +.|+|+.
T Consensus 8 Mk~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~--~i~lvaV~d~~~~~~~~~~-~~~~~~~d~~ell~d~diDvVve 84 (444)
T 3mtj_A 8 MKPIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGR--EIRVVRAAVRNLDKAEALA-GGLPLTTNPFDVVDDPEIDIVVE 84 (444)
T ss_dssp CSCEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSS--CEEEEEEECSCHHHHHHHH-TTCCEESCTHHHHTCTTCCEEEE
T ss_pred hCcccEEEECCCHHHHHHHHHHHHhHHHHHHhcCC--CEEEEEEEECCHHHhhhhc-ccCcccCCHHHHhcCCCCCEEEE
Confidence 4567999999999999999877642 21 1145433399998877663 35566778888876 5799999
Q ss_pred eeCc-ccHHHHHHHhccccCCCCEEEEe
Q 024016 78 SVKP-QVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 78 ~v~~-~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
|+|+ +...+.+... +..|+-|++-
T Consensus 85 ~tp~~~~h~~~~~~A---L~aGKhVvte 109 (444)
T 3mtj_A 85 LIGGLEPARELVMQA---IANGKHVVTA 109 (444)
T ss_dssp CCCSSTTHHHHHHHH---HHTTCEEEEC
T ss_pred cCCCchHHHHHHHHH---HHcCCEEEEC
Confidence 9985 5555554332 3466677754
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=98.01 E-value=8.2e-05 Score=63.39 Aligned_cols=95 Identities=15% Similarity=0.223 Sum_probs=63.5
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCC--CHHHHHH----HHH-----cCceeccCchhhccCCCEEEEe
Q 024016 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHS--NLKRRDA----FES-----IGVKVLSDNNAVVEYSDVVVFS 78 (274)
Q Consensus 11 ~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r--~~~~~~~----l~~-----~g~~~~~~~~~~~~~aDiIil~ 78 (274)
|||+|+| +|.+|.+++..|+..|+. .++.++ |+ ++++++. +.. ..+++..+..++++++|+||++
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~--~el~L~-Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVi~~ 77 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIA--DEVVFV-DIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVIT 77 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCC--SEEEEE-CCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEEC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCC--CEEEEE-cCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhCCCCEEEEc
Confidence 5999999 999999999999988762 368889 99 7765432 222 1223333346778999999998
Q ss_pred eC-cc---------------cHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 79 VK-PQ---------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 79 v~-~~---------------~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
.. +. .++++++.+..+ .++..++..++++.
T Consensus 78 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~~~viv~SNPv~ 123 (303)
T 1o6z_A 78 AGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNPVD 123 (303)
T ss_dssp CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTT-CSCCEEEECCSSHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEeCChHH
Confidence 73 11 233444555544 56667776666654
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=98.01 E-value=9.9e-06 Score=73.15 Aligned_cols=73 Identities=12% Similarity=0.210 Sum_probs=57.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCcee-ccC---c---hh-hccCCCEEEEee
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKV-LSD---N---NA-VVEYSDVVVFSV 79 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~-~~~---~---~~-~~~~aDiIil~v 79 (274)
+.|||-|+|+|.+|..+|+.|.+.|| +|++. ++++++++.+.+ .++.+ ..+ + .+ -+++||+++.++
T Consensus 2 ~~M~iiI~G~G~vG~~la~~L~~~~~----~v~vI-d~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t 76 (461)
T 4g65_A 2 NAMKIIILGAGQVGGTLAENLVGENN----DITIV-DKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVT 76 (461)
T ss_dssp CCEEEEEECCSHHHHHHHHHTCSTTE----EEEEE-ESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECC
T ss_pred CcCEEEEECCCHHHHHHHHHHHHCCC----CEEEE-ECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEc
Confidence 46899999999999999999999999 99999 999999998876 56543 222 1 11 157899998888
Q ss_pred CcccHHH
Q 024016 80 KPQVVKD 86 (274)
Q Consensus 80 ~~~~~~~ 86 (274)
+++...-
T Consensus 77 ~~De~Nl 83 (461)
T 4g65_A 77 NTDETNM 83 (461)
T ss_dssp SCHHHHH
T ss_pred CChHHHH
Confidence 8765443
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=2.8e-05 Score=69.92 Aligned_cols=90 Identities=12% Similarity=0.159 Sum_probs=69.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCc-ccHHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVVKD 86 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~-~~~~~ 86 (274)
...++++|+|+|.+|.++++.|...|. +|+++ ++++.+.......|..+ .+..++...+|+++.++.. +.+..
T Consensus 263 L~GKtVvVtGaGgIG~aiA~~Laa~GA----~Viv~-D~~~~~a~~Aa~~g~dv-~~lee~~~~aDvVi~atG~~~vl~~ 336 (488)
T 3ond_A 263 IAGKVAVVAGYGDVGKGCAAALKQAGA----RVIVT-EIDPICALQATMEGLQV-LTLEDVVSEADIFVTTTGNKDIIML 336 (488)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTTCEE-CCGGGTTTTCSEEEECSSCSCSBCH
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHHhCCcc-CCHHHHHHhcCEEEeCCCChhhhhH
Confidence 356799999999999999999999998 99999 99998887777777765 4667888899999998753 33322
Q ss_pred HHHHhccccCCCCEEEEecC
Q 024016 87 VAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~~ 106 (274)
+....++++.+|++...
T Consensus 337 ---e~l~~mk~gaiVvNaG~ 353 (488)
T 3ond_A 337 ---DHMKKMKNNAIVCNIGH 353 (488)
T ss_dssp ---HHHTTSCTTEEEEESSS
T ss_pred ---HHHHhcCCCeEEEEcCC
Confidence 12234578888877643
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=6.4e-06 Score=67.88 Aligned_cols=82 Identities=17% Similarity=0.199 Sum_probs=62.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcE-EEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v-~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v 87 (274)
-.|||+++|+|+||+.+++. . ++ ++ .+| + ++..++ |+.+++|.++++.++|+|+-|-.++++.+.
T Consensus 11 ~~~rV~i~G~GaIG~~v~~~--~-~l----eLv~v~-~---~k~gel---gv~a~~d~d~lla~pD~VVe~A~~~av~e~ 76 (253)
T 1j5p_A 11 HHMTVLIIGMGNIGKKLVEL--G-NF----EKIYAY-D---RISKDI---PGVVRLDEFQVPSDVSTVVECASPEAVKEY 76 (253)
T ss_dssp CCCEEEEECCSHHHHHHHHH--S-CC----SEEEEE-C---SSCCCC---SSSEECSSCCCCTTCCEEEECSCHHHHHHH
T ss_pred ccceEEEECcCHHHHHHHhc--C-Cc----EEEEEE-e---cccccc---CceeeCCHHHHhhCCCEEEECCCHHHHHHH
Confidence 35899999999999999988 4 66 65 666 6 333322 777778888888899999999988877775
Q ss_pred HHHhccccCCCCEEEEecCC
Q 024016 88 AMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 88 ~~~i~~~l~~~~~vis~~~g 107 (274)
...+ |..|.-+|.++.|
T Consensus 77 ~~~i---L~aG~dvv~~S~g 93 (253)
T 1j5p_A 77 SLQI---LKNPVNYIIISTS 93 (253)
T ss_dssp HHHH---TTSSSEEEECCGG
T ss_pred HHHH---HHCCCCEEEcChh
Confidence 5554 4677778876654
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.98 E-value=9.9e-06 Score=73.19 Aligned_cols=89 Identities=19% Similarity=0.247 Sum_probs=63.1
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHH-cCcee--c--c---CchhhccCCCEEEEe
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFES-IGVKV--L--S---DNNAVVEYSDVVVFS 78 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~-g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~--~--~---~~~~~~~~aDiIil~ 78 (274)
.++++|.|+|+|.+|++++..|.+. |+ +|+++ +|++++++.+.+ .++.. . . +..++++++|+||.|
T Consensus 21 l~~k~VlIiGAGgiG~aia~~L~~~~g~----~V~v~-~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~ 95 (467)
T 2axq_A 21 HMGKNVLLLGSGFVAQPVIDTLAANDDI----NVTVA-CRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISL 95 (467)
T ss_dssp --CEEEEEECCSTTHHHHHHHHHTSTTE----EEEEE-ESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEEC
T ss_pred CCCCEEEEECChHHHHHHHHHHHhCCCC----eEEEE-ECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEEC
Confidence 3456899999999999999999998 66 89999 999999888875 34432 1 1 223456789999999
Q ss_pred eCcccHHHHHHHhccccCCCCEEEEe
Q 024016 79 VKPQVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 79 v~~~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
+|+.....+.... +.++..+++.
T Consensus 96 tp~~~~~~v~~a~---l~~g~~vvd~ 118 (467)
T 2axq_A 96 IPYTFHPNVVKSA---IRTKTDVVTS 118 (467)
T ss_dssp SCGGGHHHHHHHH---HHHTCEEEEC
T ss_pred CchhhhHHHHHHH---HhcCCEEEEe
Confidence 9976544443322 2345566654
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=97.97 E-value=1.6e-05 Score=69.17 Aligned_cols=145 Identities=12% Similarity=0.068 Sum_probs=85.8
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCC-----CCCCCcEEEEeCC-CHHH-HHH----HHH-cCceeccCchhhccCCCEE
Q 024016 9 ESFILGFIG-AGKMAESIAKGVAKSG-----VLPPDRICTAVHS-NLKR-RDA----FES-IGVKVLSDNNAVVEYSDVV 75 (274)
Q Consensus 9 ~~~~IgiIG-~G~mG~~~a~~L~~~g-----~~~~~~v~v~~~r-~~~~-~~~----l~~-~g~~~~~~~~~~~~~aDiI 75 (274)
+++||+|+| .|.+|..+.+.|.+++ + .+++...+| +..+ ... +.. ..+.+.+...+.+.++|+|
T Consensus 8 ~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~---~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~~~~~~~DvV 84 (352)
T 2nqt_A 8 NATKVAVAGASGYAGGEILRLLLGHPAYADGR---LRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEAAVLGGHDAV 84 (352)
T ss_dssp SCEEEEEETTTSHHHHHHHHHHHTCHHHHTTS---EEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCHHHHTTCSEE
T ss_pred cCCEEEEECCCCHHHHHHHHHHHcCCCCCCcc---EEEEEEECCCcCCCchhhhcccccccceeeeccCCHHHhcCCCEE
Confidence 457999999 8999999999998876 3 266665232 3222 221 111 1122211112345689999
Q ss_pred EEeeCcccHHHHHHHhccccCCCCEEEEecCCCCH---HHHHHhhC-CCc--eEEEcCCc---HHhhcCCceEEecCCCC
Q 024016 76 VFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL---KDLQEWTG-HSR--FIRVMPNT---PSAVGEAATVMSLGGTA 146 (274)
Q Consensus 76 il~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~---~~l~~~~~-~~~--~~~~~p~~---~~~~~~g~~~i~~~~~~ 146 (274)
|+|++.....++...+ ..|..+|++++.... +..++|++ .+. +.-..|.. +....+ ...+ ..+++
T Consensus 85 f~alg~~~s~~~~~~~----~~G~~vIDlSa~~R~~~~~~~~~~y~~~h~~~~vyglPEv~~n~~~i~~-~~iI-anPgC 158 (352)
T 2nqt_A 85 FLALPHGHSAVLAQQL----SPETLIIDCGADFRLTDAAVWERFYGSSHAGSWPYGLPELPGARDQLRG-TRRI-AVPGC 158 (352)
T ss_dssp EECCTTSCCHHHHHHS----CTTSEEEECSSTTTCSCHHHHHHHHSSCCCCCCCBSCTTSTTHHHHHTT-CSEE-ECCCH
T ss_pred EECCCCcchHHHHHHH----hCCCEEEEECCCccCCcchhhhhhccccCCCCeeEEecccccCHHHHhc-CCEE-EcCCH
Confidence 9999988877777665 357889998877642 45677776 222 23344443 333332 2333 34444
Q ss_pred CH-HHHHHHHHHhhhcC
Q 024016 147 TE-EDGELIGKLFGSVG 162 (274)
Q Consensus 147 ~~-~~~~~v~~ll~~~g 162 (274)
.. ...-.+.++.+..+
T Consensus 159 ~tt~~~lal~PL~~~~~ 175 (352)
T 2nqt_A 159 YPTAALLALFPALAADL 175 (352)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 43 33456778877665
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=2.1e-05 Score=68.18 Aligned_cols=91 Identities=11% Similarity=0.128 Sum_probs=59.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceecc-----------------CchhhccCC
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLS-----------------DNNAVVEYS 72 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~-----------------~~~~~~~~a 72 (274)
.||||+|+|+||..+++.|.+... -++...+++++++...+.. .|+.... +..++.+++
T Consensus 2 ikVgIiGaG~iG~~~~r~L~~~p~---~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~v 78 (340)
T 1b7g_O 2 VNVAVNGYGTIGKRVADAIIKQPD---MKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTS 78 (340)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTT---EEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHC
T ss_pred eEEEEEecCHHHHHHHHHHHcCCC---CEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCC
Confidence 589999999999999999886543 2555444887665544443 4444322 222334579
Q ss_pred CEEEEeeCcccHHHHHHHhccccCCCCEEEEecCC
Q 024016 73 DVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 73 DiIil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g 107 (274)
|+||.|+|.....+...... ..|..+|+.++.
T Consensus 79 DvV~~aTp~~~s~~~a~~~~---~aG~kvV~~sa~ 110 (340)
T 1b7g_O 79 DIVVDTTPNGVGAQYKPIYL---QLQRNAIFQGGE 110 (340)
T ss_dssp SEEEECCSTTHHHHHHHHHH---HTTCEEEECTTS
T ss_pred CEEEECCCCchhHHHHHHHH---HcCCeEEEeCCC
Confidence 99999999887766665433 345556665443
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.93 E-value=2.7e-05 Score=63.65 Aligned_cols=88 Identities=9% Similarity=0.045 Sum_probs=60.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec-c---Cch---hh-ccCCCEEEEeeCc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-S---DNN---AV-VEYSDVVVFSVKP 81 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~-~---~~~---~~-~~~aDiIil~v~~ 81 (274)
.++|.|+|+|.+|..+++.|.+.| .|+++ ++++++.+.+. .|+.+. . +.. ++ ++++|.||+++++
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~g-----~v~vi-d~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~ 81 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGSE-----VFVLA-EDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLES 81 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTSE-----EEEEE-SCGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSC
T ss_pred CCEEEEECCChHHHHHHHHHHhCC-----eEEEE-ECCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCC
Confidence 468999999999999999998776 27788 99999888777 665432 1 211 22 6789999999987
Q ss_pred ccHHHHHHHhccccCCCCEEEEe
Q 024016 82 QVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 82 ~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
+.....+......+.++..+|.-
T Consensus 82 d~~n~~~~~~a~~~~~~~~iia~ 104 (234)
T 2aef_A 82 DSETIHCILGIRKIDESVRIIAE 104 (234)
T ss_dssp HHHHHHHHHHHHHHCSSSEEEEE
T ss_pred cHHHHHHHHHHHHHCCCCeEEEE
Confidence 75544443444445565344433
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=97.92 E-value=1.5e-05 Score=69.70 Aligned_cols=92 Identities=17% Similarity=0.182 Sum_probs=64.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce---ec----cCchhhccCCCEEEEeeCc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK---VL----SDNNAVVEYSDVVVFSVKP 81 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~---~~----~~~~~~~~~aDiIil~v~~ 81 (274)
...+|.|+|+|.+|...++.+...|. +|+++ +|++++.+.+.+.+.. .. .+..+.+.++|+||-|++.
T Consensus 166 ~~~~VlViGaGgvG~~aa~~a~~~Ga----~V~v~-dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI~~~~~ 240 (361)
T 1pjc_A 166 KPGKVVILGGGVVGTEAAKMAVGLGA----QVQIF-DINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLV 240 (361)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-eCCHHHHHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEEECCCc
Confidence 34799999999999999999999998 99999 9999998888764321 11 1233456689999999853
Q ss_pred cc--HHH-HHHHhccccCCCCEEEEec
Q 024016 82 QV--VKD-VAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 82 ~~--~~~-v~~~i~~~l~~~~~vis~~ 105 (274)
.. ... +..+....++++..++++.
T Consensus 241 ~~~~~~~li~~~~~~~~~~g~~ivdv~ 267 (361)
T 1pjc_A 241 PGRRAPILVPASLVEQMRTGSVIVDVA 267 (361)
T ss_dssp TTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred CCCCCCeecCHHHHhhCCCCCEEEEEe
Confidence 22 000 0112223467788888764
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.92 E-value=4.7e-05 Score=63.81 Aligned_cols=69 Identities=19% Similarity=0.198 Sum_probs=52.9
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec-cCchhh-ccCCCEEEEeeC
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDNNAV-VEYSDVVVFSVK 80 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~-~~~~~~-~~~aDiIil~v~ 80 (274)
++| +|||.|.|+|.+|+.+++.|++.|+ +|++. +|++++.+.+...++... .|..++ ..++|+||-+..
T Consensus 2 ~~m-~~~ilVtGaG~iG~~l~~~L~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~d~vi~~a~ 72 (286)
T 3ius_A 2 NAM-TGTLLSFGHGYTARVLSRALAPQGW----RIIGT-SRNPDQMEAIRASGAEPLLWPGEEPSLDGVTHLLISTA 72 (286)
T ss_dssp ----CCEEEEETCCHHHHHHHHHHGGGTC----EEEEE-ESCGGGHHHHHHTTEEEEESSSSCCCCTTCCEEEECCC
T ss_pred CCC-cCcEEEECCcHHHHHHHHHHHHCCC----EEEEE-EcChhhhhhHhhCCCeEEEecccccccCCCCEEEECCC
Confidence 444 4799999999999999999999999 99999 999988887776666432 121111 678999999874
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=97.92 E-value=1.3e-05 Score=69.01 Aligned_cols=96 Identities=14% Similarity=0.189 Sum_probs=62.7
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCC--CCCCCcEEEEeCCCHHH--HHHHHHcC----cee---ccCchhhccCCCEEE
Q 024016 9 ESFILGFIG-AGKMAESIAKGVAKSG--VLPPDRICTAVHSNLKR--RDAFESIG----VKV---LSDNNAVVEYSDVVV 76 (274)
Q Consensus 9 ~~~~IgiIG-~G~mG~~~a~~L~~~g--~~~~~~v~v~~~r~~~~--~~~l~~~g----~~~---~~~~~~~~~~aDiIi 76 (274)
+.|||+||| +|.+|.+++..|...| + +|.++ |++++. ...+.... +.. .++..++++++|+||
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~----ev~l~-Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi 81 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMNPLVS----VLHLY-DVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLII 81 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHCTTEE----EEEEE-ESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCCC----EEEEE-eCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEE
Confidence 347999999 8999999999999888 5 89999 887652 22233311 222 224567789999999
Q ss_pred EeeC-c---------------ccHHHHHHHhccccCCCCEEEEecCCCCH
Q 024016 77 FSVK-P---------------QVVKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (274)
Q Consensus 77 l~v~-~---------------~~~~~v~~~i~~~l~~~~~vis~~~g~~~ 110 (274)
++.. + ..++++++.+... .++..++..++++..
T Consensus 82 ~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~-~p~~~viv~SNPv~~ 130 (326)
T 1smk_A 82 VPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKC-CPRAIVNLISNPVNS 130 (326)
T ss_dssp ECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHH
T ss_pred EcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEECCchHH
Confidence 9973 1 1234444555544 356666655565543
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=3.5e-05 Score=65.99 Aligned_cols=96 Identities=16% Similarity=0.188 Sum_probs=64.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH--HHHHHc--C--cee---ccCchhhccCCCEEEEee-
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR--DAFESI--G--VKV---LSDNNAVVEYSDVVVFSV- 79 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~--~~l~~~--g--~~~---~~~~~~~~~~aDiIil~v- 79 (274)
|||+|||+ |.+|.+++..|...|+ ..+|.++ |+++.+. ..+... . +.. .++..+++++||+||++.
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~--~~ev~L~-Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag 77 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPL--VSRLTLY-DIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAG 77 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTT--CSEEEEE-ESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC--CcEEEEE-eCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCC
Confidence 59999998 9999999999998884 2289999 9886222 223221 1 222 135666789999999997
Q ss_pred -C--c------------ccHHHHHHHhccccCCCCEEEEecCCCCH
Q 024016 80 -K--P------------QVVKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (274)
Q Consensus 80 -~--~------------~~~~~v~~~i~~~l~~~~~vis~~~g~~~ 110 (274)
| + ..++++.+.+..+- |+..++..++++..
T Consensus 78 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~sNPv~~ 122 (314)
T 1mld_A 78 VPRKPGMTRDDLFNTNATIVATLTAACAQHC-PDAMICIISNPVNS 122 (314)
T ss_dssp CCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSCHHH
T ss_pred cCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEECCCcch
Confidence 2 2 12445555565544 66677767776653
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.90 E-value=2e-05 Score=68.72 Aligned_cols=91 Identities=14% Similarity=0.180 Sum_probs=58.8
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH-H---HHHHHH-----------cCceec-cCchhhcc-C
Q 024016 10 SFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-R---RDAFES-----------IGVKVL-SDNNAVVE-Y 71 (274)
Q Consensus 10 ~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~-~---~~~l~~-----------~g~~~~-~~~~~~~~-~ 71 (274)
++||+|+| .|.+|..+++.|.++.. .+|... ++++. . ...... ....+. .++.+..+ +
T Consensus 8 ~~kV~IiGAtG~iG~~llr~L~~~p~---~ev~~i-~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (354)
T 1ys4_A 8 KIKVGVLGATGSVGQRFVQLLADHPM---FELTAL-AASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFED 83 (354)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCSS---EEEEEE-EECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGGTT
T ss_pred cceEEEECcCCHHHHHHHHHHhcCCC---CEEEEE-EcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhcCC
Confidence 46999999 89999999999887542 267666 43221 1 211110 011111 24455446 8
Q ss_pred CCEEEEeeCcccHHHHHHHhccccCCCCEEEEecCC
Q 024016 72 SDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 72 aDiIil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g 107 (274)
+|+||+|+|.....+....+. ..|..||+.++.
T Consensus 84 ~DvV~~atp~~~~~~~a~~~~---~aG~~VId~s~~ 116 (354)
T 1ys4_A 84 VDIVFSALPSDLAKKFEPEFA---KEGKLIFSNASA 116 (354)
T ss_dssp CCEEEECCCHHHHHHHHHHHH---HTTCEEEECCST
T ss_pred CCEEEECCCchHHHHHHHHHH---HCCCEEEECCch
Confidence 999999999888777776654 357779988664
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.90 E-value=1.2e-05 Score=69.46 Aligned_cols=90 Identities=9% Similarity=0.123 Sum_probs=57.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c------------------CceeccCchhhccC
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I------------------GVKVLSDNNAVVEY 71 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~------------------g~~~~~~~~~~~~~ 71 (274)
+||||+|+|.||..+++.|.++.. .++...+++++.....+.. . ++.+..+..++..+
T Consensus 2 ikVgIiGaG~iG~~l~r~L~~~~~---~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~ 78 (337)
T 1cf2_P 2 KAVAINGYGTVGKRVADAIAQQDD---MKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDE 78 (337)
T ss_dssp EEEEEECCSTTHHHHHHHHHTSSS---EEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHT
T ss_pred eEEEEEeECHHHHHHHHHHHcCCC---cEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcC
Confidence 589999999999999999887432 1554433776554433332 2 22222244555678
Q ss_pred CCEEEEeeCcccHHHHHHHhccccCCCCEEEEecC
Q 024016 72 SDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 72 aDiIil~v~~~~~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
+|+||.|+|.....+....... .|+.||+.++
T Consensus 79 vDvV~~atp~~~~~~~a~~~l~---aG~~VId~sp 110 (337)
T 1cf2_P 79 ADIVIDCTPEGIGAKNLKMYKE---KGIKAIFQGG 110 (337)
T ss_dssp CSEEEECCSTTHHHHHHHHHHH---HTCCEEECTT
T ss_pred CCEEEECCCchhhHHHHHHHHH---cCCEEEEecC
Confidence 9999999998877666655432 3445665544
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.89 E-value=8.8e-06 Score=70.45 Aligned_cols=90 Identities=14% Similarity=0.152 Sum_probs=61.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHH----cC--ceeccCchhhcc--CCCEEEEeeC
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFES----IG--VKVLSDNNAVVE--YSDVVVFSVK 80 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-~~~~~l~~----~g--~~~~~~~~~~~~--~aDiIil~v~ 80 (274)
++||||||+|.+|...+..| ..+. +|...+++++ ++.+.+.+ .| ...++|.+++++ +.|+|++|+|
T Consensus 2 ~~rvgiiG~G~~~~~~~~~l-~~~~----~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp 76 (337)
T 3ip3_A 2 SLKICVIGSSGHFRYALEGL-DEEC----SITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTV 76 (337)
T ss_dssp CEEEEEECSSSCHHHHHTTC-CTTE----EEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSS
T ss_pred ceEEEEEccchhHHHHHHhc-CCCc----EEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCC
Confidence 46999999999998777777 4454 6664339887 34444433 35 467888888876 4899999999
Q ss_pred cccHHHHHHHhccccCCCCEEEEecCCC
Q 024016 81 PQVVKDVAMQIRPLLSRKKLLVSVAAGV 108 (274)
Q Consensus 81 ~~~~~~v~~~i~~~l~~~~~vis~~~g~ 108 (274)
+....++..... ..|+-|+ +-+++
T Consensus 77 ~~~H~~~~~~al---~aGkhVl-~EKPl 100 (337)
T 3ip3_A 77 FSLNGKILLEAL---ERKIHAF-VEKPI 100 (337)
T ss_dssp HHHHHHHHHHHH---HTTCEEE-ECSSS
T ss_pred cchHHHHHHHHH---HCCCcEE-EeCCC
Confidence 887666655443 3444444 33443
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.89 E-value=1.6e-05 Score=66.94 Aligned_cols=92 Identities=11% Similarity=0.117 Sum_probs=62.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCcccHHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~~~~~ 86 (274)
...+++.|+|+|.+|.+++..|.+.|. .+|+++ +|++++++.+++ .+.....+..+ + ++|+||-|||......
T Consensus 120 ~~~k~vlvlGaGGaaraia~~L~~~G~---~~v~v~-nRt~~ka~~La~~~~~~~~~~l~~-l-~~DivInaTp~Gm~~~ 193 (282)
T 3fbt_A 120 IKNNICVVLGSGGAARAVLQYLKDNFA---KDIYVV-TRNPEKTSEIYGEFKVISYDELSN-L-KGDVIINCTPKGMYPK 193 (282)
T ss_dssp CTTSEEEEECSSTTHHHHHHHHHHTTC---SEEEEE-ESCHHHHHHHCTTSEEEEHHHHTT-C-CCSEEEECSSTTSTTS
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCC---CEEEEE-eCCHHHHHHHHHhcCcccHHHHHh-c-cCCEEEECCccCccCC
Confidence 346799999999999999999999986 379999 999999988875 22222233334 4 8999999997542211
Q ss_pred H--HHHhccccCCCCEEEEec
Q 024016 87 V--AMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 87 v--~~~i~~~l~~~~~vis~~ 105 (274)
. ..--...++++.+|+++.
T Consensus 194 ~~~~pi~~~~l~~~~~v~Dlv 214 (282)
T 3fbt_A 194 EGESPVDKEVVAKFSSAVDLI 214 (282)
T ss_dssp TTCCSSCHHHHTTCSEEEESC
T ss_pred CccCCCCHHHcCCCCEEEEEe
Confidence 0 000012245677777765
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=97.87 E-value=1.6e-05 Score=71.49 Aligned_cols=75 Identities=15% Similarity=0.212 Sum_probs=55.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cC-cee----cc---CchhhccCCCEEEEe
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG-VKV----LS---DNNAVVEYSDVVVFS 78 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g-~~~----~~---~~~~~~~~aDiIil~ 78 (274)
|++++|.|+|+|.+|++++..|.+.|+ +|+++ +|++++++.+.+ .+ +.. .. +..++++++|+||.|
T Consensus 1 M~~k~VlViGaG~iG~~ia~~L~~~G~----~V~v~-~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~ 75 (450)
T 1ff9_A 1 MATKSVLMLGSGFVTRPTLDVLTDSGI----KVTVA-CRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISL 75 (450)
T ss_dssp -CCCEEEEECCSTTHHHHHHHHHTTTC----EEEEE-ESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEEC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCcC----EEEEE-ECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEEC
Confidence 345789999999999999999999998 89999 999998887765 22 321 11 223556789999999
Q ss_pred eCcccHHHH
Q 024016 79 VKPQVVKDV 87 (274)
Q Consensus 79 v~~~~~~~v 87 (274)
+|......+
T Consensus 76 a~~~~~~~i 84 (450)
T 1ff9_A 76 IPYTFHATV 84 (450)
T ss_dssp CC--CHHHH
T ss_pred CccccchHH
Confidence 987544333
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=97.87 E-value=7.5e-05 Score=64.48 Aligned_cols=92 Identities=17% Similarity=0.151 Sum_probs=61.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC--CHHHHHHHHH----cC------------c-------eec--
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS--NLKRRDAFES----IG------------V-------KVL-- 62 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r--~~~~~~~l~~----~g------------~-------~~~-- 62 (274)
++||||+|+|++|..+++.|.+... -+|...+++ +++....+.+ +| + .+.
T Consensus 3 ~ikVgI~G~G~iGr~~~R~l~~~~~---vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~ 79 (335)
T 1u8f_O 3 KVKVGVNGFGRIGRLVTRAAFNSGK---VDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQE 79 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCS---SEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECC
T ss_pred ceEEEEEccCHHHHHHHHHHHcCCC---cEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEec
Confidence 4699999999999999999887542 266655474 6776666654 11 0 111
Q ss_pred cCchhh-c--cCCCEEEEeeCcccHHHHHHHhccccCCCCEEEEecCC
Q 024016 63 SDNNAV-V--EYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 63 ~~~~~~-~--~~aDiIil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g 107 (274)
.++.++ . .++|+||.|+|.....+..... +..|..+|.++++
T Consensus 80 ~d~~~l~~~~~~vDvV~eatg~~~~~e~a~~~---l~aGak~V~iSap 124 (335)
T 1u8f_O 80 RDPSKIKWGDAGAEYVVESTGVFTTMEKAGAH---LQGGAKRVIISAP 124 (335)
T ss_dssp SSGGGCCTTTTTCCEEEECSSSCCSHHHHGGG---GGGTCSEEEESSC
T ss_pred CCHHHCccccCCCCEEEECCCchhhHHHHHHH---HhCCCeEEEeccC
Confidence 244444 1 4789999999988877766543 4456556666554
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.87 E-value=2.4e-05 Score=66.39 Aligned_cols=92 Identities=15% Similarity=0.185 Sum_probs=67.8
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH-HHHHHcCceeccCchhhcc--CCCEEEEeeCcccHH
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR-DAFESIGVKVLSDNNAVVE--YSDVVVFSVKPQVVK 85 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~-~~l~~~g~~~~~~~~~~~~--~aDiIil~v~~~~~~ 85 (274)
..++.|+|+ |+||..+++++.+.|+ + .++ ..+|.+. +. -.|+.++.+..++.+ ++|++++++|++...
T Consensus 13 ~~~v~V~Gasg~~G~~~~~~l~~~g~----~-~V~-~VnP~~~g~~--i~G~~vy~sl~el~~~~~~Dv~ii~vp~~~~~ 84 (294)
T 2yv1_A 13 NTKAIVQGITGRQGSFHTKKMLECGT----K-IVG-GVTPGKGGQN--VHGVPVFDTVKEAVKETDANASVIFVPAPFAK 84 (294)
T ss_dssp TCCEEEETTTSHHHHHHHHHHHHTTC----C-EEE-EECTTCTTCE--ETTEEEESSHHHHHHHHCCCEEEECCCHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHhCCC----e-EEE-EeCCCCCCce--ECCEeeeCCHHHHhhcCCCCEEEEccCHHHHH
Confidence 357888898 9999999999999998 5 343 3344321 11 158888888888887 899999999999999
Q ss_pred HHHHHhccccCCCCEEEEecCCCCHH
Q 024016 86 DVAMQIRPLLSRKKLLVSVAAGVKLK 111 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~~g~~~~ 111 (274)
+++.+.... .. +.+|-.+.|++.+
T Consensus 85 ~~v~ea~~~-Gi-~~vVi~t~G~~~~ 108 (294)
T 2yv1_A 85 DAVFEAIDA-GI-ELIVVITEHIPVH 108 (294)
T ss_dssp HHHHHHHHT-TC-SEEEECCSCCCHH
T ss_pred HHHHHHHHC-CC-CEEEEECCCCCHH
Confidence 988876543 12 3355567788764
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.86 E-value=2.7e-05 Score=65.72 Aligned_cols=94 Identities=19% Similarity=0.215 Sum_probs=64.8
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c-----C--ceecc--CchhhccCCCEEEE
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I-----G--VKVLS--DNNAVVEYSDVVVF 77 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~-----g--~~~~~--~~~~~~~~aDiIil 77 (274)
.+.+++.|+|+|.+|.+++..|.+.|. .+|+++ +|++++++.+.+ . + +...+ +..+.+.++|+||-
T Consensus 125 l~~k~vlVlGaGG~g~aia~~L~~~G~---~~v~i~-~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVIn 200 (283)
T 3jyo_A 125 AKLDSVVQVGAGGVGNAVAYALVTHGV---QKLQVA-DLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVN 200 (283)
T ss_dssp CCCSEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-CSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEE
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC---CEEEEE-ECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEE
Confidence 345789999999999999999999996 269999 999999887765 1 1 22222 44566778999999
Q ss_pred eeCcccHHHHHHHh-ccccCCCCEEEEec
Q 024016 78 SVKPQVVKDVAMQI-RPLLSRKKLLVSVA 105 (274)
Q Consensus 78 ~v~~~~~~~v~~~i-~~~l~~~~~vis~~ 105 (274)
|+|......--..+ ...++++.+++++.
T Consensus 201 aTp~Gm~~~~~~pi~~~~l~~~~~v~Dlv 229 (283)
T 3jyo_A 201 ATPMGMPAHPGTAFDVSCLTKDHWVGDVV 229 (283)
T ss_dssp CSSTTSTTSCSCSSCGGGCCTTCEEEECC
T ss_pred CCCCCCCCCCCCCCCHHHhCCCCEEEEec
Confidence 99754221100001 12456777777765
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.85 E-value=4.3e-05 Score=66.29 Aligned_cols=101 Identities=14% Similarity=0.152 Sum_probs=63.7
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----cC---ceeccCchhhccCCCEEEEee
Q 024016 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IG---VKVLSDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 9 ~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-----~g---~~~~~~~~~~~~~aDiIil~v 79 (274)
+++||+|+| .|.+|..+.+.|.+... .++... .+..+.-.++.+ .| +.+ .+..+ +.++|+||+|+
T Consensus 3 ~~~kV~IiGAtG~iG~~llr~L~~~p~---~elv~v-~s~~~~g~~~~~~~~~~~g~~~~~~-~~~~~-~~~vDvV~~a~ 76 (345)
T 2ozp_A 3 GKKTLSIVGASGYAGGEFLRLALSHPY---LEVKQV-TSRRFAGEPVHFVHPNLRGRTNLKF-VPPEK-LEPADILVLAL 76 (345)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHTCTT---EEEEEE-BCSTTTTSBGGGTCGGGTTTCCCBC-BCGGG-CCCCSEEEECC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHcCCC---cEEEEE-ECchhhCchhHHhCchhcCcccccc-cchhH-hcCCCEEEEcC
Confidence 457999999 69999999999987643 266655 333222111221 11 122 22233 47899999999
Q ss_pred CcccHHHHHHHhccccCCCCEEEEecCCCC---HHHHHHhhC
Q 024016 80 KPQVVKDVAMQIRPLLSRKKLLVSVAAGVK---LKDLQEWTG 118 (274)
Q Consensus 80 ~~~~~~~v~~~i~~~l~~~~~vis~~~g~~---~~~l~~~~~ 118 (274)
|.....+...... ..|..+|+.++... .+..++|++
T Consensus 77 g~~~s~~~a~~~~---~aG~~VId~Sa~~r~~~~~~y~~~y~ 115 (345)
T 2ozp_A 77 PHGVFAREFDRYS---ALAPVLVDLSADFRLKDPELYRRYYG 115 (345)
T ss_dssp CTTHHHHTHHHHH---TTCSEEEECSSTTSCSCHHHHHHHHC
T ss_pred CcHHHHHHHHHHH---HCCCEEEEcCccccCCChHHHHhhhc
Confidence 9887777665543 56788999877543 344555543
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=5.2e-05 Score=64.59 Aligned_cols=95 Identities=15% Similarity=0.182 Sum_probs=69.7
Q ss_pred CCCeEEEE-cc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhcc--CCCEEEEeeCcccH
Q 024016 9 ESFILGFI-GA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE--YSDVVVFSVKPQVV 84 (274)
Q Consensus 9 ~~~~IgiI-G~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~aDiIil~v~~~~~ 84 (274)
+..+++|| |+ |++|...+++|.+.|+ ++ ++ ..+|.+.. -.-.|+.++.+..++.+ +.|++++++|++..
T Consensus 12 ~~~siaVV~Gasg~~G~~~~~~l~~~G~----~~-v~-~VnP~~~g-~~i~G~~vy~sl~el~~~~~vD~avI~vP~~~~ 84 (305)
T 2fp4_A 12 DKNTKVICQGFTGKQGTFHSQQALEYGT----NL-VG-GTTPGKGG-KTHLGLPVFNTVKEAKEQTGATASVIYVPPPFA 84 (305)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTC----EE-EE-EECTTCTT-CEETTEEEESSHHHHHHHHCCCEEEECCCHHHH
T ss_pred CCCcEEEEECCCCCHHHHHHHHHHHCCC----cE-EE-EeCCCcCc-ceECCeeeechHHHhhhcCCCCEEEEecCHHHH
Confidence 44678999 98 9999999999999998 73 33 33443210 00158888888888887 89999999999999
Q ss_pred HHHHHHhccccCCCCEEEEecCCCCHHH
Q 024016 85 KDVAMQIRPLLSRKKLLVSVAAGVKLKD 112 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~~g~~~~~ 112 (274)
.+++.+.... .. +.++-.+.|++.+.
T Consensus 85 ~~~~~e~i~~-Gi-~~iv~~t~G~~~~~ 110 (305)
T 2fp4_A 85 AAAINEAIDA-EV-PLVVCITEGIPQQD 110 (305)
T ss_dssp HHHHHHHHHT-TC-SEEEECCCCCCHHH
T ss_pred HHHHHHHHHC-CC-CEEEEECCCCChHH
Confidence 9999876543 12 34555778887653
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=3.8e-06 Score=67.72 Aligned_cols=78 Identities=10% Similarity=0.088 Sum_probs=54.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHh-CCCCCCCcEEEEeCCCHHHHHHHHHcCce--eccCchhhcc-CCCEEEEeeCcccHH
Q 024016 10 SFILGFIGAGKMAESIAKGVAK-SGVLPPDRICTAVHSNLKRRDAFESIGVK--VLSDNNAVVE-YSDVVVFSVKPQVVK 85 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~-~g~~~~~~v~v~~~r~~~~~~~l~~~g~~--~~~~~~~~~~-~aDiIil~v~~~~~~ 85 (274)
.++|+|||+|++|..+++.+.. .|+ ++..++|.++++..... .|+. ..++..+.++ +.|+|++|+|.....
T Consensus 80 ~~rV~IIGaG~~G~~la~~~~~~~g~----~iVg~~D~dp~k~g~~i-~gv~V~~~~dl~ell~~~ID~ViIA~Ps~~~~ 154 (211)
T 2dt5_A 80 KWGLCIVGMGRLGSALADYPGFGESF----ELRGFFDVDPEKVGRPV-RGGVIEHVDLLPQRVPGRIEIALLTVPREAAQ 154 (211)
T ss_dssp CEEEEEECCSHHHHHHHHCSCCCSSE----EEEEEEESCTTTTTCEE-TTEEEEEGGGHHHHSTTTCCEEEECSCHHHHH
T ss_pred CCEEEEECccHHHHHHHHhHhhcCCc----EEEEEEeCCHHHHhhhh-cCCeeecHHhHHHHHHcCCCEEEEeCCchhHH
Confidence 4689999999999999986322 255 66655598887664322 2333 3456666665 589999999988777
Q ss_pred HHHHHhc
Q 024016 86 DVAMQIR 92 (274)
Q Consensus 86 ~v~~~i~ 92 (274)
++...+.
T Consensus 155 ei~~~l~ 161 (211)
T 2dt5_A 155 KAADLLV 161 (211)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00012 Score=60.27 Aligned_cols=81 Identities=17% Similarity=0.288 Sum_probs=55.9
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhcc-CCCEEEEeeCcccHHHH
Q 024016 11 FILGFIGA-GKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE-YSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~-g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~-~aDiIil~v~~~~~~~v 87 (274)
|||+|+|+ |+||+.+++.+.+. ++ ++....+++ ++..++.. ++|+||-+++|+...+.
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~----elva~~d~~---------------~dl~~~~~~~~DvvIDfT~p~a~~~~ 61 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDL----TLSAELDAG---------------DPLSLLTDGNTEVVIDFTHPDVVMGN 61 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTC----EEEEEECTT---------------CCTHHHHHTTCCEEEECSCTTTHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCC----EEEEEEccC---------------CCHHHHhccCCcEEEEccChHHHHHH
Confidence 58999996 99999999998765 77 776443664 23334443 78999988888888777
Q ss_pred HHHhccccCCCCEEEEecCCCCHHHH
Q 024016 88 AMQIRPLLSRKKLLVSVAAGVKLKDL 113 (274)
Q Consensus 88 ~~~i~~~l~~~~~vis~~~g~~~~~l 113 (274)
+..... .|.-+|..+.|.+.+..
T Consensus 62 ~~~a~~---~g~~~VigTTG~~~e~~ 84 (245)
T 1p9l_A 62 LEFLID---NGIHAVVGTTGFTAERF 84 (245)
T ss_dssp HHHHHH---TTCEEEECCCCCCHHHH
T ss_pred HHHHHH---cCCCEEEcCCCCCHHHH
Confidence 765432 34445544557776544
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=97.82 E-value=3.1e-05 Score=68.78 Aligned_cols=89 Identities=15% Similarity=0.125 Sum_probs=61.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c------Cceec-------cCchhhccC--CCE
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I------GVKVL-------SDNNAVVEY--SDV 74 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~------g~~~~-------~~~~~~~~~--aDi 74 (274)
+||+|||+|.+|+.+++.|.+.|.+ ..+|.++ +|++++++.+.+ . .+... .+..+++++ +|+
T Consensus 2 ~kVlIiGaGgiG~~ia~~L~~~g~~-~~~V~v~-~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~Dv 79 (405)
T 4ina_A 2 AKVLQIGAGGVGGVVAHKMAMNREV-FSHITLA-SRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQI 79 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHTCTTT-CCEEEEE-ESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCC-ceEEEEE-ECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCE
Confidence 5899999999999999999998731 0278999 999999887765 1 23211 123345555 899
Q ss_pred EEEeeCcccHHHHHHHhccccCCCCEEEEe
Q 024016 75 VVFSVKPQVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 75 Iil~v~~~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
||.|+++..-..+..... ..+..++++
T Consensus 80 Vin~ag~~~~~~v~~a~l---~~g~~vvD~ 106 (405)
T 4ina_A 80 VLNIALPYQDLTIMEACL---RTGVPYLDT 106 (405)
T ss_dssp EEECSCGGGHHHHHHHHH---HHTCCEEES
T ss_pred EEECCCcccChHHHHHHH---HhCCCEEEe
Confidence 999998876555554332 234456654
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.81 E-value=8.4e-06 Score=70.26 Aligned_cols=89 Identities=13% Similarity=0.170 Sum_probs=57.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCC-CC----CCcEE-EEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGV-LP----PDRIC-TAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ 82 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~-~~----~~~v~-v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~ 82 (274)
+++||||||+|.||+.+++.|.+... +. ..+|. ++ +|++++.+.+. ...+++|..+++ +.|+|+.|++..
T Consensus 2 k~irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~-d~~~~~~~~~~--~~~~~~d~~~ll-~iDvVve~t~~~ 77 (332)
T 2ejw_A 2 EALKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVL-VRDPRKPRAIP--QELLRAEPFDLL-EADLVVEAMGGV 77 (332)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEE-CSCTTSCCSSC--GGGEESSCCCCT-TCSEEEECCCCS
T ss_pred CeeEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEE-ECCHHHhhccC--cccccCCHHHHh-CCCEEEECCCCc
Confidence 45799999999999999999877530 00 01454 55 88876543221 123456777877 899999999866
Q ss_pred c-HHHHHHHhccccCCCCEEEEe
Q 024016 83 V-VKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 83 ~-~~~v~~~i~~~l~~~~~vis~ 104 (274)
. ..+...+. +..|+-||+.
T Consensus 78 ~~a~~~~~~A---L~aGKhVVta 97 (332)
T 2ejw_A 78 EAPLRLVLPA---LEAGIPLITA 97 (332)
T ss_dssp HHHHHHHHHH---HHTTCCEEEC
T ss_pred HHHHHHHHHH---HHcCCeEEEC
Confidence 4 34444332 3456667753
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=97.81 E-value=2.1e-05 Score=67.56 Aligned_cols=98 Identities=10% Similarity=0.026 Sum_probs=58.9
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhC-----CCCCCCcEEEEeCCCHHH---------HH-HHHHcC-cee-ccCchhhc
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKS-----GVLPPDRICTAVHSNLKR---------RD-AFESIG-VKV-LSDNNAVV 69 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~-----g~~~~~~v~v~~~r~~~~---------~~-~l~~~g-~~~-~~~~~~~~ 69 (274)
+|++.||+|||+|+||+.+++.|.+. |. .-+|+..++|+++. .. ...+.| +.. ..+..+.+
T Consensus 1 ~Mk~irVgIiG~G~VG~~~~~~L~~~~~~~~g~--~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~~~~~d~~e~l 78 (325)
T 3ing_A 1 GMKEIRIILMGTGNVGLNVLRIIDASNRRRSAF--SIKVVGVSDSRSYASGRNLDISSIISNKEKTGRISDRAFSGPEDL 78 (325)
T ss_dssp --CEEEEEEECCSHHHHHHHHHHHHHHHHC--C--EEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSCSSBCCSGGGG
T ss_pred CCceEEEEEEcCcHHHHHHHHHHHhchhhccCC--CEEEEEEEecChhhcccccCHHHHHHHhhhcCCCCcccCCHHHHh
Confidence 36678999999999999999999874 22 11444333777542 11 122234 211 11556665
Q ss_pred c--CCCEEEEeeCccc-HHHHHHHhccccCCCCEEEEecC
Q 024016 70 E--YSDVVVFSVKPQV-VKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 70 ~--~aDiIil~v~~~~-~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
. +.|+|+.|+|+.. .+...+.+...+..|+-||+...
T Consensus 79 ~~~~iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhVVtaNK 118 (325)
T 3ing_A 79 MGEAADLLVDCTPASRDGVREYSLYRMAFESGMNVVTANK 118 (325)
T ss_dssp TTSCCSEEEECCCCCSSSHHHHHHHHHHHHTTCEEEECCC
T ss_pred cCCCCCEEEECCCCccccchHHHHHHHHHHCCCeEEEcCc
Confidence 4 5899999998764 34334444445667788886533
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0001 Score=63.52 Aligned_cols=100 Identities=17% Similarity=0.219 Sum_probs=65.4
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCC---CCcEEEEeCCC----HHHHHH----HHHc------CceeccCchhhcc
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLP---PDRICTAVHSN----LKRRDA----FESI------GVKVLSDNNAVVE 70 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~---~~~v~v~~~r~----~~~~~~----l~~~------g~~~~~~~~~~~~ 70 (274)
+.|||.|||+ |.+|++++..|+..|+.. ..+|.++ |++ +++.+. +... .+...++..++++
T Consensus 4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~-Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~ 82 (329)
T 1b8p_A 4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLL-EIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFK 82 (329)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEE-CCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTT
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEE-cCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhC
Confidence 3479999998 999999999999887521 1268899 998 554432 3321 1233356677889
Q ss_pred CCCEEEEeeC----cc------------cHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 71 YSDVVVFSVK----PQ------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 71 ~aDiIil~v~----~~------------~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
+||+||++.. +. .++++++.+..+-.++..+|..++++.
T Consensus 83 ~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~ 137 (329)
T 1b8p_A 83 DADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPAN 137 (329)
T ss_dssp TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchH
Confidence 9999999862 11 133444455544336667777776554
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00015 Score=61.86 Aligned_cols=95 Identities=20% Similarity=0.253 Sum_probs=62.6
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHH---HHHHHHHc--Cceec----cCchhhccCCCEEEEee
Q 024016 11 FILGFIG-AGKMAESIAKGVAKS-GVLPPDRICTAVHSNLK---RRDAFESI--GVKVL----SDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 11 ~~IgiIG-~G~mG~~~a~~L~~~-g~~~~~~v~v~~~r~~~---~~~~l~~~--g~~~~----~~~~~~~~~aDiIil~v 79 (274)
|||+||| +|.+|.+++..|... ++. .++.++ |+++. ...++... ...+. ++..+..++||+||++.
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~--~el~L~-Di~~~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~a 77 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSG--SELSLY-DIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISA 77 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTT--EEEEEE-CSSTTHHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCC--ceEEEE-ecCCCchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEeC
Confidence 6999999 899999999999876 542 379999 98861 12233332 22332 24567789999999987
Q ss_pred C----cc------------cHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 80 K----PQ------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 80 ~----~~------------~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
. |. .++++.+.+..+ .|+.+++..++++.
T Consensus 78 g~~rkpG~~R~dll~~N~~I~~~i~~~i~~~-~p~a~vlvvtNPvd 122 (312)
T 3hhp_A 78 GVARKPGMDRSDLFNVNAGIVKNLVQQVAKT-CPKACIGIITNPVN 122 (312)
T ss_dssp SCSCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECSSCHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEecCcch
Confidence 2 21 123333445544 47777887777654
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0001 Score=63.83 Aligned_cols=87 Identities=14% Similarity=0.128 Sum_probs=57.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCC-CCCCCcEEEEeCCCHHHHHHHHH-c--------------------CceeccCchhh
Q 024016 11 FILGFIGAGKMAESIAKGVAKSG-VLPPDRICTAVHSNLKRRDAFES-I--------------------GVKVLSDNNAV 68 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g-~~~~~~v~v~~~r~~~~~~~l~~-~--------------------g~~~~~~~~~~ 68 (274)
+||||+|+|++|..+++.|.+.. + +|..+++++++....+.+ . ++.+..+..+.
T Consensus 3 ikVgI~G~G~IGr~v~r~l~~~~~~----evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~ 78 (343)
T 2yyy_A 3 AKVLINGYGSIGKRVADAVSMQDDM----EVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDI 78 (343)
T ss_dssp EEEEEECCSHHHHHHHHHHHHSSSE----EEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGT
T ss_pred eEEEEECCCHHHHHHHHHHHhCCCc----eEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHh
Confidence 59999999999999999998763 4 665553655554433333 1 22222234445
Q ss_pred ccCCCEEEEeeCcccHHHHHHHhccccCCCCEEEE
Q 024016 69 VEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVS 103 (274)
Q Consensus 69 ~~~aDiIil~v~~~~~~~v~~~i~~~l~~~~~vis 103 (274)
..++|+||.|++.....+..+ ..+++.|+.||+
T Consensus 79 ~~~vDiV~eatg~~~s~~~a~--~~~l~aG~~VI~ 111 (343)
T 2yyy_A 79 IEDADIVVDGAPKKIGKQNLE--NIYKPHKVKAIL 111 (343)
T ss_dssp GGGCSEEEECCCTTHHHHHHH--HTTTTTTCEEEE
T ss_pred ccCCCEEEECCCccccHHHHH--HHHHHCCCEEEE
Confidence 568999999998877555543 234566777764
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.73 E-value=9.4e-05 Score=62.80 Aligned_cols=92 Identities=15% Similarity=0.185 Sum_probs=66.6
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH-HHHHHcCceeccCchhhcc--C-CCEEEEeeCcccH
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR-DAFESIGVKVLSDNNAVVE--Y-SDVVVFSVKPQVV 84 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~-~~l~~~g~~~~~~~~~~~~--~-aDiIil~v~~~~~ 84 (274)
..+|.|+|+ |+||+.+++++.+.|+ + .++ ..+|.+. +. -.|+.++.+..++.+ . +|++++++|++..
T Consensus 13 ~~~vvV~Gasg~~G~~~~~~l~~~g~----~-~v~-~VnP~~~g~~--i~G~~vy~sl~el~~~~~~~DvaIi~vp~~~~ 84 (297)
T 2yv2_A 13 ETRVLVQGITGREGSFHAKAMLEYGT----K-VVA-GVTPGKGGSE--VHGVPVYDSVKEALAEHPEINTSIVFVPAPFA 84 (297)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTC----E-EEE-EECTTCTTCE--ETTEEEESSHHHHHHHCTTCCEEEECCCGGGH
T ss_pred CCEEEEECCCCCHHHHHHHHHHhCCC----c-EEE-EeCCCCCCce--ECCEeeeCCHHHHhhcCCCCCEEEEecCHHHH
Confidence 357888898 9999999999999998 6 333 3334321 11 158888888888776 5 9999999999999
Q ss_pred HHHHHHhccccCCCCEEEEecCCCCHH
Q 024016 85 KDVAMQIRPLLSRKKLLVSVAAGVKLK 111 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~~g~~~~ 111 (274)
.+++.+.... .. +.+|-.+.|++.+
T Consensus 85 ~~~v~ea~~~-Gi-~~vVi~t~G~~~~ 109 (297)
T 2yv2_A 85 PDAVYEAVDA-GI-RLVVVITEGIPVH 109 (297)
T ss_dssp HHHHHHHHHT-TC-SEEEECCCCCCHH
T ss_pred HHHHHHHHHC-CC-CEEEEECCCCCHH
Confidence 9998876643 12 3345466788754
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00016 Score=58.54 Aligned_cols=95 Identities=16% Similarity=0.211 Sum_probs=65.0
Q ss_pred CCCCCCCC--CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHHc-CceeccC--chhhccCCCE
Q 024016 1 MDAFPIPA--ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESI-GVKVLSD--NNAVVEYSDV 74 (274)
Q Consensus 1 ~~~~~~~~--~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-~~~~~l~~~-g~~~~~~--~~~~~~~aDi 74 (274)
|.-+|... +.++|.|||.|.+|..-++.|++.|. +|+++ +++. +..+.+.+. +++.... ..+.+.++|+
T Consensus 20 ~~~~Pifl~L~gk~VLVVGgG~va~~ka~~Ll~~GA----~VtVv-ap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~adL 94 (223)
T 3dfz_A 20 RHMYTVMLDLKGRSVLVVGGGTIATRRIKGFLQEGA----AITVV-APTVSAEINEWEAKGQLRVKRKKVGEEDLLNVFF 94 (223)
T ss_dssp --CCEEEECCTTCCEEEECCSHHHHHHHHHHGGGCC----CEEEE-CSSCCHHHHHHHHTTSCEEECSCCCGGGSSSCSE
T ss_pred cCccccEEEcCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-CCCCCHHHHHHHHcCCcEEEECCCCHhHhCCCCE
Confidence 33455544 45799999999999999999999998 99999 7654 345555553 3543221 2345788999
Q ss_pred EEEeeCcccHHHHHHHhccccCCCCEEEEe
Q 024016 75 VVFSVKPQVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 75 Iil~v~~~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
||.|+.+..+...+..... . .+.|..
T Consensus 95 VIaAT~d~~~N~~I~~~ak---~-gi~VNv 120 (223)
T 3dfz_A 95 IVVATNDQAVNKFVKQHIK---N-DQLVNM 120 (223)
T ss_dssp EEECCCCTHHHHHHHHHSC---T-TCEEEC
T ss_pred EEECCCCHHHHHHHHHHHh---C-CCEEEE
Confidence 9999987777666655542 2 355554
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=97.71 E-value=3.9e-05 Score=56.18 Aligned_cols=94 Identities=17% Similarity=0.214 Sum_probs=71.8
Q ss_pred CCeEEEEcc----cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHH
Q 024016 10 SFILGFIGA----GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (274)
Q Consensus 10 ~~~IgiIG~----G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~ 85 (274)
.++|+|||+ +..|..+.++|.+.|| +|+-. |+..+.. .|...+.+..++-+ .|++++++|++.+.
T Consensus 4 p~siAVVGaS~~~~~~g~~v~~~L~~~g~----~V~pV-nP~~~~i-----~G~~~y~sl~dlp~-vDlavi~~p~~~v~ 72 (122)
T 3ff4_A 4 MKKTLILGATPETNRYAYLAAERLKSHGH----EFIPV-GRKKGEV-----LGKTIINERPVIEG-VDTVTLYINPQNQL 72 (122)
T ss_dssp CCCEEEETCCSCTTSHHHHHHHHHHHHTC----CEEEE-SSSCSEE-----TTEECBCSCCCCTT-CCEEEECSCHHHHG
T ss_pred CCEEEEEccCCCCCCHHHHHHHHHHHCCC----eEEEE-CCCCCcC-----CCeeccCChHHCCC-CCEEEEEeCHHHHH
Confidence 468999998 6799999999999999 89988 7654322 58888888888767 99999999999999
Q ss_pred HHHHHhccccCCCCEEEEecCCCCHHHHHHhh
Q 024016 86 DVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWT 117 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~ 117 (274)
+++++.... .... ++ ++.|...+++.+..
T Consensus 73 ~~v~e~~~~-g~k~-v~-~~~G~~~~e~~~~a 101 (122)
T 3ff4_A 73 SEYNYILSL-KPKR-VI-FNPGTENEELEEIL 101 (122)
T ss_dssp GGHHHHHHH-CCSE-EE-ECTTCCCHHHHHHH
T ss_pred HHHHHHHhc-CCCE-EE-ECCCCChHHHHHHH
Confidence 999887653 2333 33 45677655555544
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=1e-05 Score=64.94 Aligned_cols=79 Identities=15% Similarity=0.182 Sum_probs=54.9
Q ss_pred CCeEEEEcccHHHHHHHHHH--HhCCCCCCCcEEEEeCCCHH-HHHH-HHHcCceec--cCchhhcc--CCCEEEEeeCc
Q 024016 10 SFILGFIGAGKMAESIAKGV--AKSGVLPPDRICTAVHSNLK-RRDA-FESIGVKVL--SDNNAVVE--YSDVVVFSVKP 81 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L--~~~g~~~~~~v~v~~~r~~~-~~~~-l~~~g~~~~--~~~~~~~~--~aDiIil~v~~ 81 (274)
..+++|+|+|++|.++++.+ .+.|+ ++..+.|.+++ +... .. .|+.+. ++..+.++ +.|++++|+|+
T Consensus 84 ~~~V~IvGaG~lG~aLa~~~~~~~~g~----~iVg~~D~dp~~kiG~~~i-~GvpV~~~~dL~~~v~~~~Id~vIIAvPs 158 (212)
T 3keo_A 84 TTNVMLVGCGNIGRALLHYRFHDRNKM----QISMAFDLDSNDLVGKTTE-DGIPVYGISTINDHLIDSDIETAILTVPS 158 (212)
T ss_dssp CEEEEEECCSHHHHHHTTCCCCTTSSE----EEEEEEECTTSTTTTCBCT-TCCBEEEGGGHHHHC-CCSCCEEEECSCG
T ss_pred CCEEEEECcCHHHHHHHHhhhcccCCe----EEEEEEeCCchhccCceeE-CCeEEeCHHHHHHHHHHcCCCEEEEecCc
Confidence 45899999999999999874 23455 66544498887 6532 11 355443 45556665 58999999998
Q ss_pred ccHHHHHHHhcc
Q 024016 82 QVVKDVAMQIRP 93 (274)
Q Consensus 82 ~~~~~v~~~i~~ 93 (274)
....++.+.+..
T Consensus 159 ~~aq~v~d~lv~ 170 (212)
T 3keo_A 159 TEAQEVADILVK 170 (212)
T ss_dssp GGHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 887777776543
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=97.69 E-value=2.4e-05 Score=63.90 Aligned_cols=71 Identities=8% Similarity=0.111 Sum_probs=51.3
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhCC-CCCCCcEEEEeCCCHHHHHHHHHcCceec----cC---chhhccCCCEEEEe
Q 024016 8 AESFILGFIG-AGKMAESIAKGVAKSG-VLPPDRICTAVHSNLKRRDAFESIGVKVL----SD---NNAVVEYSDVVVFS 78 (274)
Q Consensus 8 ~~~~~IgiIG-~G~mG~~~a~~L~~~g-~~~~~~v~v~~~r~~~~~~~l~~~g~~~~----~~---~~~~~~~aDiIil~ 78 (274)
|.+++|.|.| .|.+|.++++.|++.| + +|+++ +|++++.+.+...++... .+ ..++++++|+||.+
T Consensus 21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~----~V~~~-~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~ 95 (236)
T 3qvo_A 21 GHMKNVLILGAGGQIARHVINQLADKQTI----KQTLF-ARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYAN 95 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCTTE----EEEEE-ESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEE
T ss_pred CcccEEEEEeCCcHHHHHHHHHHHhCCCc----eEEEE-EcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEc
Confidence 4456899998 6999999999999999 8 99999 999887654433343321 12 23456789999988
Q ss_pred eCccc
Q 024016 79 VKPQV 83 (274)
Q Consensus 79 v~~~~ 83 (274)
.....
T Consensus 96 a~~~~ 100 (236)
T 3qvo_A 96 LTGED 100 (236)
T ss_dssp CCSTT
T ss_pred CCCCc
Confidence 75443
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00014 Score=59.11 Aligned_cols=68 Identities=19% Similarity=0.274 Sum_probs=54.8
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCc-eec-----cCchhhccCCCEEEEeeC
Q 024016 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV-KVL-----SDNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~-~~~-----~~~~~~~~~aDiIil~v~ 80 (274)
++.|+|.|.|+ |.+|+.+++.|++.|+ +|++. +|++++.+.+...++ ... .+..+.+.++|+||-+..
T Consensus 19 l~~~~ilVtGatG~iG~~l~~~L~~~G~----~V~~~-~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag 93 (236)
T 3e8x_A 19 FQGMRVLVVGANGKVARYLLSELKNKGH----EPVAM-VRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAG 93 (236)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCC
T ss_pred cCCCeEEEECCCChHHHHHHHHHHhCCC----eEEEE-ECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCC
Confidence 35689999987 9999999999999999 99999 999998888776666 432 334566778999998874
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=2e-05 Score=67.24 Aligned_cols=93 Identities=13% Similarity=0.050 Sum_probs=62.6
Q ss_pred CCCCCCCeEEEEcccHH-HHHHHHHHHhCCCCCCCcEEEEeCCCHHH----HHHHHHcCcee-----c--cCchhhccCC
Q 024016 5 PIPAESFILGFIGAGKM-AESIAKGVAKSGVLPPDRICTAVHSNLKR----RDAFESIGVKV-----L--SDNNAVVEYS 72 (274)
Q Consensus 5 ~~~~~~~~IgiIG~G~m-G~~~a~~L~~~g~~~~~~v~v~~~r~~~~----~~~l~~~g~~~-----~--~~~~~~~~~a 72 (274)
+.....+++.|||.|.| |..+++.|...|. +|+++ +|+..+ .+.+...-... + .+..+.+.+|
T Consensus 172 g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gA----tVtv~-nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~A 246 (320)
T 1edz_A 172 GNRLYGKKCIVINRSEIVGRPLAALLANDGA----TVYSV-DVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDS 246 (320)
T ss_dssp TCTTTTCEEEEECCCTTTHHHHHHHHHTTSC----EEEEE-CSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHC
T ss_pred CCCCCCCEEEEECCCcchHHHHHHHHHHCCC----EEEEE-eCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccC
Confidence 33456789999999986 9999999999997 89999 998432 22222110111 1 4567788999
Q ss_pred CEEEEeeCcccHHHHHHHhccccCCCCEEEEecC
Q 024016 73 DVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 73 DiIil~v~~~~~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
|+||.+++.... ++. ...+++|.++|++..
T Consensus 247 DIVIsAtg~p~~--vI~--~e~vk~GavVIDVgi 276 (320)
T 1edz_A 247 DVVITGVPSENY--KFP--TEYIKEGAVCINFAC 276 (320)
T ss_dssp SEEEECCCCTTC--CBC--TTTSCTTEEEEECSS
T ss_pred CEEEECCCCCcc--eeC--HHHcCCCeEEEEcCC
Confidence 999999964310 010 123578888888744
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00011 Score=60.75 Aligned_cols=78 Identities=12% Similarity=0.143 Sum_probs=55.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------------------HHHHHHHH------cCceec--
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRDAFES------IGVKVL-- 62 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-------------------~~~~~l~~------~g~~~~-- 62 (274)
..+|.|||+|.+|+.++..|...|. .+|+++ |++. .|++.+++ .++.+.
T Consensus 31 ~~~VlVvG~Gg~G~~va~~La~~Gv---~~i~lv-D~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~ 106 (249)
T 1jw9_B 31 DSRVLIVGLGGLGCAASQYLASAGV---GNLTLL-DFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPV 106 (249)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTC---SEEEEE-CCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred CCeEEEEeeCHHHHHHHHHHHHcCC---CeEEEE-cCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEE
Confidence 3689999999999999999999996 378999 9887 56655543 133221
Q ss_pred c------CchhhccCCCEEEEeeCcccHHHHHHHh
Q 024016 63 S------DNNAVVEYSDVVVFSVKPQVVKDVAMQI 91 (274)
Q Consensus 63 ~------~~~~~~~~aDiIil~v~~~~~~~v~~~i 91 (274)
. +..+.++++|+||.|++....+..+...
T Consensus 107 ~~~~~~~~~~~~~~~~DvVi~~~d~~~~~~~l~~~ 141 (249)
T 1jw9_B 107 NALLDDAELAALIAEHDLVLDCTDNVAVRNQLNAG 141 (249)
T ss_dssp CSCCCHHHHHHHHHTSSEEEECCSSHHHHHHHHHH
T ss_pred eccCCHhHHHHHHhCCCEEEEeCCCHHHHHHHHHH
Confidence 1 1234567889999998765555555443
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00038 Score=61.80 Aligned_cols=112 Identities=17% Similarity=0.268 Sum_probs=70.2
Q ss_pred CCeEEEEcccHH-HHHHHHHHHh--CCCCCCCcEEEEeCCCHHHHHHHHH-------cCcee--ccCchhhccCCCEEEE
Q 024016 10 SFILGFIGAGKM-AESIAKGVAK--SGVLPPDRICTAVHSNLKRRDAFES-------IGVKV--LSDNNAVVEYSDVVVF 77 (274)
Q Consensus 10 ~~~IgiIG~G~m-G~~~a~~L~~--~g~~~~~~v~v~~~r~~~~~~~l~~-------~g~~~--~~~~~~~~~~aDiIil 77 (274)
++||+|||+|.. +..+...|+. .+. +..+|.++ |.++++++.... ...++ ++|..+++++||+||+
T Consensus 2 ~~KI~IIGaG~v~~~~l~~~l~~~~~~l-~~~el~L~-Di~~~~~~~~~~~~~~~~~~~~~v~~t~d~~~al~~AD~Vii 79 (417)
T 1up7_A 2 HMRIAVIGGGSSYTPELVKGLLDISEDV-RIDEVIFY-DIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIF 79 (417)
T ss_dssp CCEEEEETTTCTTHHHHHHHHHHHTTTS-CCCEEEEE-CSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcccCC-CcCEEEEE-eCCHHHHHHHHHHHHHHhhCCeEEEEeCCHHHHhCCCCEEEE
Confidence 479999999984 2222334455 432 23489999 999988654222 11333 3455688899999999
Q ss_pred eeCcc------------------------------------cHHHHHHHhccccCCCCEEEEecCCCCH--HHHHHhhCC
Q 024016 78 SVKPQ------------------------------------VVKDVAMQIRPLLSRKKLLVSVAAGVKL--KDLQEWTGH 119 (274)
Q Consensus 78 ~v~~~------------------------------------~~~~v~~~i~~~l~~~~~vis~~~g~~~--~~l~~~~~~ 119 (274)
+.-.. .+.++++.+..+ . +..++..+|++.. ..+.+..|.
T Consensus 80 tagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~-~-~A~lin~TNPvdi~t~a~~k~~p~ 157 (417)
T 1up7_A 80 QFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKT-S-NATIVNFTNPSGHITEFVRNYLEY 157 (417)
T ss_dssp CCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHT-T-CCEEEECSSSHHHHHHHHHHTTCC
T ss_pred cCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHH-C-CEEEEEeCChHHHHHHHHHHhCCC
Confidence 98321 134555556654 4 7889988888763 344454554
Q ss_pred CceEEE
Q 024016 120 SRFIRV 125 (274)
Q Consensus 120 ~~~~~~ 125 (274)
.+++..
T Consensus 158 ~rviG~ 163 (417)
T 1up7_A 158 EKFIGL 163 (417)
T ss_dssp SSEEEC
T ss_pred CCEEEe
Confidence 466654
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.65 E-value=3.2e-05 Score=67.00 Aligned_cols=94 Identities=14% Similarity=0.255 Sum_probs=58.1
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHHcCceecc-CchhhccCCCEEEEeeCcccHHH
Q 024016 10 SFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIGVKVLS-DNNAVVEYSDVVVFSVKPQVVKD 86 (274)
Q Consensus 10 ~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-~~~~~l~~~g~~~~~-~~~~~~~~aDiIil~v~~~~~~~ 86 (274)
++||+|+| .|.+|..+.+.|.+.+| +..++...++++. .+.-.+....+.+.+ ++ +.+.++|+||+|+|.....+
T Consensus 6 ~~kV~IiGAtG~iG~~llr~L~~~~~-~~~elv~i~s~~~~g~~~~~~g~~i~~~~~~~-~~~~~~DvV~~a~g~~~s~~ 83 (340)
T 2hjs_A 6 PLNVAVVGATGSVGEALVGLLDERDF-PLHRLHLLASAESAGQRMGFAESSLRVGDVDS-FDFSSVGLAFFAAAAEVSRA 83 (340)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTC-CCSCEEEEECTTTTTCEEEETTEEEECEEGGG-CCGGGCSEEEECSCHHHHHH
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCC-CcEEEEEEecCCCCCCccccCCcceEEecCCH-HHhcCCCEEEEcCCcHHHHH
Confidence 47999999 79999999999987666 3335555524332 110001101112211 22 23568999999999887767
Q ss_pred HHHHhccccCCCCEEEEecCCC
Q 024016 87 VAMQIRPLLSRKKLLVSVAAGV 108 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~~g~ 108 (274)
...... ..|..+|+.++..
T Consensus 84 ~a~~~~---~aG~kvId~Sa~~ 102 (340)
T 2hjs_A 84 HAERAR---AAGCSVIDLSGAL 102 (340)
T ss_dssp HHHHHH---HTTCEEEETTCTT
T ss_pred HHHHHH---HCCCEEEEeCCCC
Confidence 666543 3566788776554
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=97.65 E-value=8.8e-05 Score=63.98 Aligned_cols=102 Identities=15% Similarity=0.162 Sum_probs=65.4
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH--H---HHHHH----HHc-Cceecc--CchhhccCCCEEEE
Q 024016 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNL--K---RRDAF----ESI-GVKVLS--DNNAVVEYSDVVVF 77 (274)
Q Consensus 11 ~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~--~---~~~~l----~~~-g~~~~~--~~~~~~~~aDiIil 77 (274)
+||+|+| .|.+|..+.+.|.+... .++.....++. + +.... ... ...+.+ +..+..+++|+||+
T Consensus 5 ~kv~IvGatG~vG~~l~~~L~~~p~---~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~Dvvf~ 81 (337)
T 3dr3_A 5 LNTLIVGASGYAGAELVTYVNRHPH---MNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSPGVDVVFL 81 (337)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHCTT---EEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCTTCSEEEE
T ss_pred eEEEEECCCChHHHHHHHHHHhCCC---CcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhcCCCEEEE
Confidence 6999999 59999999998887432 25654423331 1 22211 111 233322 34444489999999
Q ss_pred eeCcccHHHHHHHhccccCCCCEEEEecCCCC---HHHHHHhhC
Q 024016 78 SVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVK---LKDLQEWTG 118 (274)
Q Consensus 78 ~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~---~~~l~~~~~ 118 (274)
|+|.....+....+. ..|..+|+.++... .+.-.+|++
T Consensus 82 a~p~~~s~~~~~~~~---~~g~~vIDlSa~fR~~d~~v~~~wy~ 122 (337)
T 3dr3_A 82 ATAHEVSHDLAPQFL---EAGCVVFDLSGAFRVNDATFYEKYYG 122 (337)
T ss_dssp CSCHHHHHHHHHHHH---HTTCEEEECSSTTSSSCHHHHHHHTS
T ss_pred CCChHHHHHHHHHHH---HCCCEEEEcCCccccCCcccchhhcc
Confidence 999988887777654 46788999988763 334445554
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.64 E-value=2.6e-05 Score=67.15 Aligned_cols=91 Identities=18% Similarity=0.189 Sum_probs=57.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhC---------CCCCCCcEEEEeCCCHHHHH------HHHH--cCceecc--Cchhhcc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKS---------GVLPPDRICTAVHSNLKRRD------AFES--IGVKVLS--DNNAVVE 70 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~---------g~~~~~~v~v~~~r~~~~~~------~l~~--~g~~~~~--~~~~~~~ 70 (274)
++||||||+|.||+.+++.|.+. +. +|...++|++++.+ .+.. ....+++ |..++++
T Consensus 2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~----~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~ 77 (327)
T 3do5_A 2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEF----KVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVR 77 (327)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCE----EEEEEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHH
T ss_pred cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCE----EEEEEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhc
Confidence 46999999999999999999875 33 55544488754422 1211 1123333 7777765
Q ss_pred --CCCEEEEeeCcccH-HHHHHHhccccCCCCEEEEe
Q 024016 71 --YSDVVVFSVKPQVV-KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 71 --~aDiIil~v~~~~~-~~v~~~i~~~l~~~~~vis~ 104 (274)
+.|+|+.|+|++.. .+..+.+...+..|+-|++-
T Consensus 78 ~~~iDvVv~~tp~~~h~~~a~~~~~~aL~aGkhVv~~ 114 (327)
T 3do5_A 78 SADYDVLIEASVTRVDGGEGVNYIREALKRGKHVVTS 114 (327)
T ss_dssp HSCCSEEEECCCCC----CHHHHHHHHHTTTCEEEEC
T ss_pred CCCCCEEEECCCCcccchhHHHHHHHHHHCCCeEEec
Confidence 58999999997742 11222333445677777754
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=7.6e-05 Score=64.50 Aligned_cols=87 Identities=15% Similarity=0.192 Sum_probs=54.4
Q ss_pred CCCCCCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCH----HHHHH---HHHcCceec-c---C---c
Q 024016 1 MDAFPIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNL----KRRDA---FESIGVKVL-S---D---N 65 (274)
Q Consensus 1 ~~~~~~~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~----~~~~~---l~~~g~~~~-~---~---~ 65 (274)
|+.-+.+|.+|+|.|+|+ |.+|+.+++.|++.|+ +|++. .|++ ++.+. +...++.+. . + .
T Consensus 1 M~~s~~~M~~~~IlVtGatG~iG~~l~~~L~~~g~----~V~~l-~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l 75 (346)
T 3i6i_A 1 MTVSPVPSPKGRVLIAGATGFIGQFVATASLDAHR----PTYIL-ARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAM 75 (346)
T ss_dssp ----------CCEEEECTTSHHHHHHHHHHHHTTC----CEEEE-ECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHH
T ss_pred CCCCCCCCCCCeEEEECCCcHHHHHHHHHHHHCCC----CEEEE-ECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHH
Confidence 555666777889999997 9999999999999998 99999 8866 44443 333565432 1 2 2
Q ss_pred hhhcc--CCCEEEEeeCcc---cHHHHHHHhc
Q 024016 66 NAVVE--YSDVVVFSVKPQ---VVKDVAMQIR 92 (274)
Q Consensus 66 ~~~~~--~aDiIil~v~~~---~~~~v~~~i~ 92 (274)
.++++ ++|+||.+.... ....+++...
T Consensus 76 ~~~~~~~~~d~Vi~~a~~~n~~~~~~l~~aa~ 107 (346)
T 3i6i_A 76 EKILKEHEIDIVVSTVGGESILDQIALVKAMK 107 (346)
T ss_dssp HHHHHHTTCCEEEECCCGGGGGGHHHHHHHHH
T ss_pred HHHHhhCCCCEEEECCchhhHHHHHHHHHHHH
Confidence 34566 899999998643 2345554443
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.61 E-value=9.2e-05 Score=64.37 Aligned_cols=92 Identities=16% Similarity=0.279 Sum_probs=57.8
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--------------cCceecc-CchhhccCC
Q 024016 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------------IGVKVLS-DNNAVVEYS 72 (274)
Q Consensus 9 ~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~--------------~g~~~~~-~~~~~~~~a 72 (274)
+++||+|+| .|.+|..+.+.|.+... .++...++.+....+.+.+ ..+.+.+ ++.+ +.++
T Consensus 3 ~~~kV~IiGAtG~iG~~llr~L~~~p~---~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~v 78 (350)
T 2ep5_A 3 DKIKVSLLGSTGMVGQKMVKMLAKHPY---LELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYED-HKDV 78 (350)
T ss_dssp CCEEEEEESCSSHHHHHHHHHHTTCSS---EEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGG-GTTC
T ss_pred CCcEEEEECcCCHHHHHHHHHHHhCCC---cEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHH-hcCC
Confidence 467999999 89999999998876532 2666552222121111211 1122221 3333 4789
Q ss_pred CEEEEeeCcccHHHHHHHhccccCCCCEEEEecCC
Q 024016 73 DVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 73 DiIil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g 107 (274)
|+||+|+|.....+...... ..|..||+.++.
T Consensus 79 DvVf~atp~~~s~~~a~~~~---~aG~~VId~s~~ 110 (350)
T 2ep5_A 79 DVVLSALPNELAESIELELV---KNGKIVVSNASP 110 (350)
T ss_dssp SEEEECCCHHHHHHHHHHHH---HTTCEEEECSST
T ss_pred CEEEECCChHHHHHHHHHHH---HCCCEEEECCcc
Confidence 99999999887777666544 356778987654
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00057 Score=54.87 Aligned_cols=65 Identities=17% Similarity=0.266 Sum_probs=51.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec-cCc----hhhccCCCEEEEeeC
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDN----NAVVEYSDVVVFSVK 80 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~-~~~----~~~~~~aDiIil~v~ 80 (274)
|||.|.|+ |.+|+.+++.|++.|+ +|++. .|++++.+.+...++... .|. .+.+.++|+||-+..
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~----~V~~~-~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag 71 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGH----EVLAV-VRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALS 71 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCC----EEEEE-EecccccccccCCCceEEecccccccHhhcccCCEEEECCc
Confidence 58999987 9999999999999999 99999 999988877655455421 111 245778999999873
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=6.8e-05 Score=64.68 Aligned_cols=89 Identities=11% Similarity=0.084 Sum_probs=57.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCC--------CCCCCcEE-EEeCCCHHHHHH------HH----HcCce-ecc---C
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSG--------VLPPDRIC-TAVHSNLKRRDA------FE----SIGVK-VLS---D 64 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g--------~~~~~~v~-v~~~r~~~~~~~------l~----~~g~~-~~~---~ 64 (274)
|+++||||||+|.||+.+++.|.+.. + +|. ++ +|++++.+. +. ..++. +++ |
T Consensus 4 M~~irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~----~vvaV~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 78 (331)
T 3c8m_A 4 MKTINLSIFGLGNVGLNLLRIIRSFNEENRLGLKF----NVVFVA-DSLHSYYNERIDIGKVISYKEKGSLDSLEYESIS 78 (331)
T ss_dssp CEEEEEEEECCSHHHHHHHHHHHHHHHHCSSSEEE----EEEEEE-CSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECC
T ss_pred CcEEeEEEEecCHHHHHHHHHHHhChHHHhcCCcE----EEEEEE-ECChHHhhcccChHHHhhhhccCCcccccCCCCC
Confidence 55689999999999999999987642 3 554 55 888765432 11 12332 333 6
Q ss_pred chhhc-cCCCEEEEeeCcc----cHHHHHHHhccccCCCCEEEEe
Q 024016 65 NNAVV-EYSDVVVFSVKPQ----VVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 65 ~~~~~-~~aDiIil~v~~~----~~~~v~~~i~~~l~~~~~vis~ 104 (274)
..+++ .+.|+|+.|+|+. ...+.+.. .+..|+-||+.
T Consensus 79 ~~~ll~~~iDvVv~~t~~~~~~~~~~~~~~~---AL~aGkhVvta 120 (331)
T 3c8m_A 79 ASEALARDFDIVVDATPASADGKKELAFYKE---TFENGKDVVTA 120 (331)
T ss_dssp HHHHHHSSCSEEEECSCCCSSSHHHHHHHHH---HHHTTCEEEEC
T ss_pred HHHHhCCCCCEEEECCCCCCccchHHHHHHH---HHHCCCeEEec
Confidence 66665 3689999999885 33333332 34567777764
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=97.57 E-value=3.2e-05 Score=66.84 Aligned_cols=96 Identities=13% Similarity=0.181 Sum_probs=59.4
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCC-HHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHH
Q 024016 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSN-LKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (274)
Q Consensus 9 ~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~-~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~ 86 (274)
+++||+|+| .|.+|..+.+.|.++++ +..++...++++ ..+.-.+....+.+.+...+...++|+||+|+|.....+
T Consensus 2 ~~~kV~I~GAtG~iG~~llr~L~~~~~-p~~elv~i~s~~~~G~~~~~~~~~i~~~~~~~~~~~~vDvVf~a~g~~~s~~ 80 (336)
T 2r00_A 2 QQFNVAIFGATGAVGETMLEVLQEREF-PVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDWSQVHIALFSAGGELSAK 80 (336)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTC-CEEEEEEEECTTTTTCEEEETTEEEEEEEGGGCCGGGCSEEEECSCHHHHHH
T ss_pred CccEEEEECCCCHHHHHHHHHHhcCCC-CCEEEEEEECCCCCCCceeecCceeEEecCChHHhcCCCEEEECCCchHHHH
Confidence 357999999 99999999999988743 222566553432 211000111112221111223468999999999887777
Q ss_pred HHHHhccccCCCCEEEEecCCC
Q 024016 87 VAMQIRPLLSRKKLLVSVAAGV 108 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~~g~ 108 (274)
...... ..|..+|+.++..
T Consensus 81 ~a~~~~---~~G~~vId~s~~~ 99 (336)
T 2r00_A 81 WAPIAA---EAGVVVIDNTSHF 99 (336)
T ss_dssp HHHHHH---HTTCEEEECSSTT
T ss_pred HHHHHH---HcCCEEEEcCCcc
Confidence 666543 4577889887654
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0002 Score=61.56 Aligned_cols=68 Identities=19% Similarity=0.257 Sum_probs=52.6
Q ss_pred CCeEEEEcccHHHHH-HHHHHHhCCCCCCCcEEEEeCCCH--HHHHHHHHcCceec--cCchhhc-cCCCEEEEe--eCc
Q 024016 10 SFILGFIGAGKMAES-IAKGVAKSGVLPPDRICTAVHSNL--KRRDAFESIGVKVL--SDNNAVV-EYSDVVVFS--VKP 81 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~-~a~~L~~~g~~~~~~v~v~~~r~~--~~~~~l~~~g~~~~--~~~~~~~-~~aDiIil~--v~~ 81 (274)
++||.|||.|.+|.+ +|+.|.+.|+ +|+++ |+++ ...+.|.+.|+.+. .++.++. .++|+|+.+ +|+
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~G~----~V~~~-D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi~~ 78 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEAGF----EVSGC-DAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVAKR 78 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHTTC----EEEEE-ESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTCCT
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCCC----EEEEE-cCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCcCC
Confidence 478999999999996 9999999999 99999 8764 34567777888764 3444444 479999986 454
Q ss_pred c
Q 024016 82 Q 82 (274)
Q Consensus 82 ~ 82 (274)
+
T Consensus 79 ~ 79 (326)
T 3eag_A 79 G 79 (326)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.56 E-value=9.9e-05 Score=62.17 Aligned_cols=76 Identities=13% Similarity=0.140 Sum_probs=56.1
Q ss_pred CCCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHH
Q 024016 7 PAESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (274)
Q Consensus 7 ~~~~~~IgiIG~G~-mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~ 85 (274)
+...+++.|||.|. +|.+++..|.+.|. +|+++ +|.....+ ..+.+++||+||.+++...+
T Consensus 162 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA----tVtv~-~~~T~~l~------------l~~~~~~ADIVI~Avg~p~~- 223 (300)
T 4a26_A 162 EMAGKRAVVLGRSNIVGAPVAALLMKENA----TVTIV-HSGTSTED------------MIDYLRTADIVIAAMGQPGY- 223 (300)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTC----EEEEE-CTTSCHHH------------HHHHHHTCSEEEECSCCTTC-
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC----eEEEE-eCCCCCch------------hhhhhccCCEEEECCCCCCC-
Confidence 34568999999887 79999999999998 99999 87432111 12678899999999974221
Q ss_pred HHHHHhccccCCCCEEEEe
Q 024016 86 DVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~ 104 (274)
+. ...+++|.+||++
T Consensus 224 --I~--~~~vk~GavVIDv 238 (300)
T 4a26_A 224 --VK--GEWIKEGAAVVDV 238 (300)
T ss_dssp --BC--GGGSCTTCEEEEC
T ss_pred --Cc--HHhcCCCcEEEEE
Confidence 11 1346899999986
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00011 Score=61.17 Aligned_cols=71 Identities=13% Similarity=0.257 Sum_probs=55.8
Q ss_pred CCCeEEEEcccH-HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCc-ccHHH
Q 024016 9 ESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVVKD 86 (274)
Q Consensus 9 ~~~~IgiIG~G~-mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~-~~~~~ 86 (274)
..+++.|||.|. +|.+++..|.+.|. +|+++ +++. .+..+.+++||+||.+++. ..+.
T Consensus 149 ~Gk~vvVvG~s~iVG~plA~lL~~~gA----tVtv~-~~~t--------------~~L~~~~~~ADIVI~Avg~p~~I~- 208 (276)
T 3ngx_A 149 HENTVTIVNRSPVVGRPLSMMLLNRNY----TVSVC-HSKT--------------KDIGSMTRSSKIVVVAVGRPGFLN- 208 (276)
T ss_dssp CSCEEEEECCCTTTHHHHHHHHHHTTC----EEEEE-CTTC--------------SCHHHHHHHSSEEEECSSCTTCBC-
T ss_pred CCCEEEEEcCChHHHHHHHHHHHHCCC----eEEEE-eCCc--------------ccHHHhhccCCEEEECCCCCcccc-
Confidence 457999999986 89999999999998 99999 7642 3566788999999999963 3221
Q ss_pred HHHHhccccCCCCEEEEe
Q 024016 87 VAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~ 104 (274)
..++++|.+||++
T Consensus 209 -----~~~vk~GavVIDv 221 (276)
T 3ngx_A 209 -----REMVTPGSVVIDV 221 (276)
T ss_dssp -----GGGCCTTCEEEEC
T ss_pred -----HhhccCCcEEEEe
Confidence 1346889888876
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00021 Score=59.79 Aligned_cols=74 Identities=12% Similarity=0.227 Sum_probs=56.8
Q ss_pred CCCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHH
Q 024016 7 PAESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (274)
Q Consensus 7 ~~~~~~IgiIG~G~-mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~ 85 (274)
....+++.|||.|. +|.+++..|...|. +|+++ +|+. .+..+.+++||+||.+++...+
T Consensus 158 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA----tVtv~-hs~t--------------~~L~~~~~~ADIVI~Avg~p~~- 217 (285)
T 3l07_A 158 KTEGAYAVVVGASNVVGKPVSQLLLNAKA----TVTTC-HRFT--------------TDLKSHTTKADILIVAVGKPNF- 217 (285)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTC----EEEEE-CTTC--------------SSHHHHHTTCSEEEECCCCTTC-
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCC----eEEEE-eCCc--------------hhHHHhcccCCEEEECCCCCCC-
Confidence 44668999999987 79999999999998 99999 7642 3556778999999999963221
Q ss_pred HHHHHhccccCCCCEEEEe
Q 024016 86 DVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~ 104 (274)
+. ...+++|.+||++
T Consensus 218 --I~--~~~vk~GavVIDv 232 (285)
T 3l07_A 218 --IT--ADMVKEGAVVIDV 232 (285)
T ss_dssp --BC--GGGSCTTCEEEEC
T ss_pred --CC--HHHcCCCcEEEEe
Confidence 11 1346889888876
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00062 Score=54.42 Aligned_cols=64 Identities=19% Similarity=0.285 Sum_probs=50.0
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec-cC----chhhccCCCEEEEeeC
Q 024016 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SD----NNAVVEYSDVVVFSVK 80 (274)
Q Consensus 11 ~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~-~~----~~~~~~~aDiIil~v~ 80 (274)
|||.|+| .|.+|+.+++.|++.|+ +|++. +|++++.+.+. .++... .| ..+.+.++|+||.+..
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~----~V~~~-~R~~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~d~vi~~ag 70 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGH----EVTAI-VRNAGKITQTH-KDINILQKDIFDLTLSDLSDQNVVVDAYG 70 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCSHHHHHHC-SSSEEEECCGGGCCHHHHTTCSEEEECCC
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCC----EEEEE-EcCchhhhhcc-CCCeEEeccccChhhhhhcCCCEEEECCc
Confidence 5899999 59999999999999999 99999 99988877664 344321 11 1256778999999874
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0004 Score=60.21 Aligned_cols=89 Identities=19% Similarity=0.248 Sum_probs=61.8
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhcc-CCCEEEEeeCcccH-H
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE-YSDVVVFSVKPQVV-K 85 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~-~aDiIil~v~~~~~-~ 85 (274)
...++|+|+|.|++|...++.|...|. +|+++ |+++++.+...+.|++.. +..+++. +||+++-|--...+ .
T Consensus 173 L~GktV~I~G~GnVG~~~A~~l~~~Ga----kVvvs-D~~~~~~~~a~~~ga~~v-~~~ell~~~~DIliP~A~~~~I~~ 246 (355)
T 1c1d_A 173 LDGLTVLVQGLGAVGGSLASLAAEAGA----QLLVA-DTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPCAMGGVITT 246 (355)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEECSCSCCBCH
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCC----EEEEE-eCCccHHHHHHhcCCEEe-ChHHhhcCccceecHhHHHhhcCH
Confidence 456899999999999999999999998 99988 999876333333677654 4556666 89999865333222 2
Q ss_pred HHHHHhccccCCCCEEEEecCC
Q 024016 86 DVAMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~~g 107 (274)
+-+.. ++ .++|+...++
T Consensus 247 ~~~~~----lk-~~iVie~AN~ 263 (355)
T 1c1d_A 247 EVART----LD-CSVVAGAANN 263 (355)
T ss_dssp HHHHH----CC-CSEECCSCTT
T ss_pred HHHhh----CC-CCEEEECCCC
Confidence 33333 33 4577766554
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00015 Score=58.34 Aligned_cols=66 Identities=20% Similarity=0.251 Sum_probs=50.3
Q ss_pred CeEEEEc-ccHHHHHHHHHHH-hCCCCCCCcEEEEeCCCHH-HHHHHHH--cCceec-------cCchhhccCCCEEEEe
Q 024016 11 FILGFIG-AGKMAESIAKGVA-KSGVLPPDRICTAVHSNLK-RRDAFES--IGVKVL-------SDNNAVVEYSDVVVFS 78 (274)
Q Consensus 11 ~~IgiIG-~G~mG~~~a~~L~-~~g~~~~~~v~v~~~r~~~-~~~~l~~--~g~~~~-------~~~~~~~~~aDiIil~ 78 (274)
++|.|.| .|.+|.++++.|+ +.|+ +|++. +|+++ +.+.+.. .++... .+..++++++|+||.+
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ 80 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYTDM----HITLY-GRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVG 80 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHCCC----EEEEE-ESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEES
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcCCc----eEEEE-ecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEc
Confidence 3499998 5999999999999 8999 99999 99998 8777642 333321 1223456789999998
Q ss_pred eCc
Q 024016 79 VKP 81 (274)
Q Consensus 79 v~~ 81 (274)
...
T Consensus 81 ag~ 83 (221)
T 3r6d_A 81 AME 83 (221)
T ss_dssp CCC
T ss_pred CCC
Confidence 854
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00021 Score=61.59 Aligned_cols=90 Identities=14% Similarity=0.125 Sum_probs=57.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC--CHHHHHHHHH----cCc---------------------eec
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS--NLKRRDAFES----IGV---------------------KVL 62 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r--~~~~~~~l~~----~g~---------------------~~~ 62 (274)
++||||+|+|++|..+++.|.+... .+|...+++ +++....+.+ +|. .+.
T Consensus 3 ~ikVgI~G~GrIGr~l~R~l~~~p~---vevvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v~ 79 (337)
T 3e5r_O 3 KIKIGINGFGRIGRLVARVALQSED---VELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVF 79 (337)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCSS---EEEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEEE
T ss_pred ceEEEEECcCHHHHHHHHHHhCCCC---eEEEEEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEEE
Confidence 3599999999999999999887532 266655463 5555545432 120 112
Q ss_pred c--Cchhh-c--cCCCEEEEeeCcccHHHHHHHhccccCCCC--EEEEec
Q 024016 63 S--DNNAV-V--EYSDVVVFSVKPQVVKDVAMQIRPLLSRKK--LLVSVA 105 (274)
Q Consensus 63 ~--~~~~~-~--~~aDiIil~v~~~~~~~v~~~i~~~l~~~~--~vis~~ 105 (274)
. ++.++ . .++|+||.|+|.....+...... ..|. +||+..
T Consensus 80 ~~~dp~~l~w~~~~vDvV~eaTg~~~~~e~a~~~l---~aGak~VVIs~p 126 (337)
T 3e5r_O 80 GIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHL---KGGAKKVVISAP 126 (337)
T ss_dssp CCSCGGGCCHHHHTCSEEEECSSSCCSHHHHTHHH---HTTCSEEEESSC
T ss_pred ecCChHHccccccCCCEEEECCCchhhHHHHHHHH---HcCCCEEEEecC
Confidence 1 44443 1 47999999999887777665543 3344 777653
|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00085 Score=59.75 Aligned_cols=97 Identities=15% Similarity=0.255 Sum_probs=64.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeC----CC----HH-HHHHHHH--------cCce-eccCchhhc
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVH----SN----LK-RRDAFES--------IGVK-VLSDNNAVV 69 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~----r~----~~-~~~~l~~--------~g~~-~~~~~~~~~ 69 (274)
.+..||.|+|+|.+|.+++..|.+.|. +..+|+++ | |+ .. +.+.+.. .+.. ...+..+++
T Consensus 184 l~~~rvlvlGAGgAg~aia~~L~~~G~-~~~~I~vv-d~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~l 261 (439)
T 2dvm_A 184 ISEITLALFGAGAAGFATLRILTEAGV-KPENVRVV-ELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEAL 261 (439)
T ss_dssp TTTCCEEEECCSHHHHHHHHHHHHTTC-CGGGEEEE-EEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHHH
T ss_pred ccCCEEEEECccHHHHHHHHHHHHcCC-CcCeEEEE-EccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHHh
Confidence 345789999999999999999999984 22489999 8 76 22 2111221 1110 123456778
Q ss_pred cCCCEEEEeeCc--ccHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 70 EYSDVVVFSVKP--QVVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 70 ~~aDiIil~v~~--~~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
+++|++|-+++. ..+.+ +....+.++.+|+++.++.+
T Consensus 262 ~~aDVlInaT~~~~G~~~~---e~v~~m~~~~iVfDLynP~~ 300 (439)
T 2dvm_A 262 KDADVLISFTRPGPGVIKP---QWIEKMNEDAIVFPLANPVP 300 (439)
T ss_dssp TTCSEEEECSCCCSSSSCH---HHHTTSCTTCEEEECCSSSC
T ss_pred ccCCEEEEcCCCccCCCCh---HHHHhcCCCCEEEECCCCCC
Confidence 899999999986 54432 12233567788888866653
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0003 Score=60.07 Aligned_cols=93 Identities=14% Similarity=0.103 Sum_probs=63.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC---HHHHHHHHH-----cCc--eec--cC---chhhccCC
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN---LKRRDAFES-----IGV--KVL--SD---NNAVVEYS 72 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~---~~~~~~l~~-----~g~--~~~--~~---~~~~~~~a 72 (274)
.+.+++.|+|+|.+|.+++..|.+.|. .+|+++ +|+ .++++++.+ .+. ... ++ ..+.+.++
T Consensus 152 l~gk~~lVlGaGG~g~aia~~L~~~Ga---~~V~i~-nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~a 227 (315)
T 3tnl_A 152 IIGKKMTICGAGGAATAICIQAALDGV---KEISIF-NRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAES 227 (315)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-ECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTC
T ss_pred ccCCEEEEECCChHHHHHHHHHHHCCC---CEEEEE-ECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCC
Confidence 456799999999999999999999986 379999 999 888877764 232 221 12 23446689
Q ss_pred CEEEEeeCcccHHH----HHHHhccccCCCCEEEEec
Q 024016 73 DVVVFSVKPQVVKD----VAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 73 DiIil~v~~~~~~~----v~~~i~~~l~~~~~vis~~ 105 (274)
|+||-|+|...... .+. ....++++.+|+++.
T Consensus 228 DiIINaTp~Gm~~~~~~~p~~-~~~~l~~~~~V~Dlv 263 (315)
T 3tnl_A 228 VIFTNATGVGMKPFEGETLLP-SADMLRPELIVSDVV 263 (315)
T ss_dssp SEEEECSSTTSTTSTTCCSCC-CGGGCCTTCEEEESC
T ss_pred CEEEECccCCCCCCCCCCCCC-cHHHcCCCCEEEEec
Confidence 99999998543211 010 122356777777764
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00059 Score=61.68 Aligned_cols=68 Identities=16% Similarity=0.271 Sum_probs=46.6
Q ss_pred CeEEEEcccHHHHH--HHHHHHhCCCCC--CCcEEEEeCCCHHHHHHHH-------H-cC----ceeccCchhhccCCCE
Q 024016 11 FILGFIGAGKMAES--IAKGVAKSGVLP--PDRICTAVHSNLKRRDAFE-------S-IG----VKVLSDNNAVVEYSDV 74 (274)
Q Consensus 11 ~~IgiIG~G~mG~~--~a~~L~~~g~~~--~~~v~v~~~r~~~~~~~l~-------~-~g----~~~~~~~~~~~~~aDi 74 (274)
|||+|||+|+.|.+ +...+.....++ ..+|.++ |.++++++... + .| +..++|..+++++||+
T Consensus 1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~-Di~~~rl~~~~~~~~~~~~~~~~~~~i~~t~d~~eAl~gAD~ 79 (477)
T 3u95_A 1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLM-DVHERRLNASYILARKYVEELNSPVKVVKTESLDEAIEGADF 79 (477)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEE-CSCHHHHHHHHHHHHHHHHHHTCCCEEEEESCHHHHHTTCSE
T ss_pred CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEE-CCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHhCCCCE
Confidence 69999999998754 444454432211 2379999 99998865322 1 23 3345677888999999
Q ss_pred EEEee
Q 024016 75 VVFSV 79 (274)
Q Consensus 75 Iil~v 79 (274)
||++.
T Consensus 80 Vi~~~ 84 (477)
T 3u95_A 80 IINTA 84 (477)
T ss_dssp EEECC
T ss_pred EEECc
Confidence 99986
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00027 Score=60.32 Aligned_cols=94 Identities=18% Similarity=0.226 Sum_probs=62.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC---HHHHHHHHH-----cCce--ec--cCc---hhhccCC
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN---LKRRDAFES-----IGVK--VL--SDN---NAVVEYS 72 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~---~~~~~~l~~-----~g~~--~~--~~~---~~~~~~a 72 (274)
...+++.|+|+|.+|.+++..|.+.|. .+|+++ +|+ .++++.+.+ .+.. .. .+. .+.+.++
T Consensus 146 l~gk~~lVlGAGGaaraia~~L~~~G~---~~v~v~-nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~ 221 (312)
T 3t4e_A 146 MRGKTMVLLGAGGAATAIGAQAAIEGI---KEIKLF-NRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASA 221 (312)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-ECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHC
T ss_pred cCCCEEEEECcCHHHHHHHHHHHHcCC---CEEEEE-ECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCc
Confidence 346799999999999999999999986 379999 999 888877764 2322 21 121 3446678
Q ss_pred CEEEEeeCcccHHHHHHHh---ccccCCCCEEEEec
Q 024016 73 DVVVFSVKPQVVKDVAMQI---RPLLSRKKLLVSVA 105 (274)
Q Consensus 73 DiIil~v~~~~~~~v~~~i---~~~l~~~~~vis~~ 105 (274)
|+||-|+|...-..--..+ ...++++.+++++.
T Consensus 222 DiIINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~v 257 (312)
T 3t4e_A 222 DILTNGTKVGMKPLENESLIGDVSLLRPELLVTECV 257 (312)
T ss_dssp SEEEECSSTTSTTSTTCCSCCCGGGSCTTCEEEECC
T ss_pred eEEEECCcCCCCCCCCCcccCCHHHcCCCCEEEEec
Confidence 9999998765311000011 12356667777664
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00027 Score=59.08 Aligned_cols=75 Identities=16% Similarity=0.220 Sum_probs=57.3
Q ss_pred CCCCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccH
Q 024016 6 IPAESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVV 84 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~-mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~ 84 (274)
.....+++.|||.|. +|.+++..|...|. +|+++ +|+. .+..+.+++||+||.+++...+
T Consensus 156 i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gA----tVtv~-h~~t--------------~~L~~~~~~ADIVI~Avg~p~~ 216 (285)
T 3p2o_A 156 IDLEGKDAVIIGASNIVGRPMATMLLNAGA----TVSVC-HIKT--------------KDLSLYTRQADLIIVAAGCVNL 216 (285)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHHHTTC----EEEEE-CTTC--------------SCHHHHHTTCSEEEECSSCTTC
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCC----eEEEE-eCCc--------------hhHHHHhhcCCEEEECCCCCCc
Confidence 345668999999987 69999999999998 99999 7642 3556778999999999963221
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
+. ...+++|.+||++
T Consensus 217 ---I~--~~~vk~GavVIDV 231 (285)
T 3p2o_A 217 ---LR--SDMVKEGVIVVDV 231 (285)
T ss_dssp ---BC--GGGSCTTEEEEEC
T ss_pred ---CC--HHHcCCCeEEEEe
Confidence 11 1346889888876
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00045 Score=60.21 Aligned_cols=94 Identities=16% Similarity=0.172 Sum_probs=67.5
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC----HHH----H----HHHHH-cC-ceeccCchhhccCC
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN----LKR----R----DAFES-IG-VKVLSDNNAVVEYS 72 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~----~~~----~----~~l~~-~g-~~~~~~~~~~~~~a 72 (274)
..+..||.|+|+|.+|..+++.|...|. .+|+++ ||+ .++ . +.+.+ .+ .....+..++++++
T Consensus 189 ~l~~~kVVv~GAGaAG~~iAkll~~~G~---~~I~v~-Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~A 264 (388)
T 1vl6_A 189 KIEEVKVVVNGIGAAGYNIVKFLLDLGV---KNVVAV-DRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGA 264 (388)
T ss_dssp CTTTCEEEEECCSHHHHHHHHHHHHHTC---CEEEEE-ETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTC
T ss_pred CCCCcEEEEECCCHHHHHHHHHHHhCCC---CeEEEE-ECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccC
Confidence 3456799999999999999999999986 379999 998 544 2 23333 11 11235678899999
Q ss_pred CEEEEeeCccc-HHHHHHHhccccCCCCEEEEecCCC
Q 024016 73 DVVVFSVKPQV-VKDVAMQIRPLLSRKKLLVSVAAGV 108 (274)
Q Consensus 73 DiIil~v~~~~-~~~v~~~i~~~l~~~~~vis~~~g~ 108 (274)
|++|-+..|.. -+++++.+ .++.+|+.++++.
T Consensus 265 DVlIG~Sap~l~t~emVk~M----a~~pIIfalSNPt 297 (388)
T 1vl6_A 265 DFFIGVSRGNILKPEWIKKM----SRKPVIFALANPV 297 (388)
T ss_dssp SEEEECSCSSCSCHHHHTTS----CSSCEEEECCSSS
T ss_pred CEEEEeCCCCccCHHHHHhc----CCCCEEEEcCCCC
Confidence 99998875544 45666553 4677888887765
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00014 Score=63.37 Aligned_cols=95 Identities=7% Similarity=0.088 Sum_probs=60.0
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH--HHHHHHH----------H-cCceeccCchhhccCCCE
Q 024016 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNL--KRRDAFE----------S-IGVKVLSDNNAVVEYSDV 74 (274)
Q Consensus 9 ~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~--~~~~~l~----------~-~g~~~~~~~~~~~~~aDi 74 (274)
+++||+||| .|..|.-+.+.|.++-+ .++.....++. ++....- . ....+.....+.+.++|+
T Consensus 6 ~~~kVaIvGATGyvG~eLlrlL~~hP~---~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~~~~vDv 82 (359)
T 4dpl_A 6 RTLKAAILGATGLVGIEYVRMLSNHPY---IKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKLMDDVDI 82 (359)
T ss_dssp CCEEEEETTTTSTTHHHHHHHHTTCSS---EEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGGCTTCCE
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCC---ceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHHHhcCCCE
Confidence 357999999 69999999997765432 25544323332 2232210 0 122222212234578999
Q ss_pred EEEeeCcccHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 75 VVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 75 Iil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
||+|+|.....+....+. ..|..+|+.++...
T Consensus 83 vf~a~p~~~s~~~a~~~~---~~G~~vIDlSa~~R 114 (359)
T 4dpl_A 83 IFSPLPQGAAGPVEEQFA---KEGFPVISNSPDHR 114 (359)
T ss_dssp EEECCCTTTHHHHHHHHH---HTTCEEEECSSTTT
T ss_pred EEECCChHHHHHHHHHHH---HCCCEEEEcCCCcc
Confidence 999999998888777654 46788999877653
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00014 Score=63.37 Aligned_cols=95 Identities=7% Similarity=0.088 Sum_probs=59.9
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH--HHHHHHH----------H-cCceeccCchhhccCCCE
Q 024016 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNL--KRRDAFE----------S-IGVKVLSDNNAVVEYSDV 74 (274)
Q Consensus 9 ~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~--~~~~~l~----------~-~g~~~~~~~~~~~~~aDi 74 (274)
+++||+||| .|..|.-+.+.|.++-+ .++.....++. ++....- . ....+.....+.+.++|+
T Consensus 6 ~~~kVaIvGATGyvG~eLlrlL~~hP~---~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~~~~vDv 82 (359)
T 4dpk_A 6 RTLKAAILGATGLVGIEYVRMLSNHPY---IKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKLMDDVDI 82 (359)
T ss_dssp CCEEEEETTTTSTTHHHHHHHHTTCSS---EEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGGCTTCCE
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCC---ceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHHHhcCCCE
Confidence 357999999 69999999997765432 25544323332 2232210 0 122222212234578999
Q ss_pred EEEeeCcccHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 75 VVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 75 Iil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
||+|+|.....+....+. ..|..+|+.++...
T Consensus 83 vf~a~p~~~s~~~a~~~~---~~G~~vIDlSa~~R 114 (359)
T 4dpk_A 83 IFSPLPQGAAGPVEEQFA---KEGFPVISNSPDHR 114 (359)
T ss_dssp EEECCCTTTHHHHHHHHH---HTTCEEEECSSTTT
T ss_pred EEECCChHHHHHHHHHHH---HCCCEEEEcCCCcc
Confidence 999999998888777654 46788999877643
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00028 Score=58.84 Aligned_cols=75 Identities=16% Similarity=0.218 Sum_probs=56.9
Q ss_pred CCCCCCeEEEEcccHH-HHHHHHHHHhC--CCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcc
Q 024016 6 IPAESFILGFIGAGKM-AESIAKGVAKS--GVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ 82 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~m-G~~~a~~L~~~--g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~ 82 (274)
.....+++.|||.|++ |..++..|... |. +|+++ +|+. .+..+.+++||+||.+++..
T Consensus 154 i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~a----tVtv~-h~~t--------------~~L~~~~~~ADIVI~Avg~p 214 (281)
T 2c2x_A 154 ISIAGAHVVVIGRGVTVGRPLGLLLTRRSENA----TVTLC-HTGT--------------RDLPALTRQADIVVAAVGVA 214 (281)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHTSTTTCC----EEEEE-CTTC--------------SCHHHHHTTCSEEEECSCCT
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHhcCCCCC----EEEEE-ECch--------------hHHHHHHhhCCEEEECCCCC
Confidence 3456789999999986 99999999988 66 89999 7654 35667788999999999633
Q ss_pred cHHHHHHHhccccCCCCEEEEe
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~ 104 (274)
.+ +. ...+++|.+||++
T Consensus 215 ~~---I~--~~~vk~GavVIDV 231 (281)
T 2c2x_A 215 HL---LT--ADMVRPGAAVIDV 231 (281)
T ss_dssp TC---BC--GGGSCTTCEEEEC
T ss_pred cc---cC--HHHcCCCcEEEEc
Confidence 21 11 1235788888876
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0013 Score=56.79 Aligned_cols=105 Identities=14% Similarity=0.183 Sum_probs=65.8
Q ss_pred CCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCC---CCcEEEEeCCCHH--HHH----HHHHc------CceeccCchhh
Q 024016 5 PIPAESFILGFIGA-GKMAESIAKGVAKSGVLP---PDRICTAVHSNLK--RRD----AFESI------GVKVLSDNNAV 68 (274)
Q Consensus 5 ~~~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~---~~~v~v~~~r~~~--~~~----~l~~~------g~~~~~~~~~~ 68 (274)
|-.|+..||+|+|+ |.+|.+++..|.....+. +.++.++ |.++. +++ +|... .+.+.+++.+.
T Consensus 19 ~~s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~-Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~~a 97 (345)
T 4h7p_A 19 PGSMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLL-DIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVA 97 (345)
T ss_dssp ---CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEE-CCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHHHH
T ss_pred CCCCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEE-CCCCccccchhhhhhhhhcCccCCCcEEEcCChHHH
Confidence 33445569999996 999999999887765432 1268899 98763 222 22221 23345677788
Q ss_pred ccCCCEEEEee--C--cc------------cHHHHHHHhccccCCCCEEEEecCCCCH
Q 024016 69 VEYSDVVVFSV--K--PQ------------VVKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (274)
Q Consensus 69 ~~~aDiIil~v--~--~~------------~~~~v~~~i~~~l~~~~~vis~~~g~~~ 110 (274)
+++||+||++- | |. .++++.+.|..+-.|+..|+-+++++..
T Consensus 98 ~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~ 155 (345)
T 4h7p_A 98 FDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANT 155 (345)
T ss_dssp TTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred hCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcch
Confidence 99999999975 2 32 1333334455554577777767776543
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00065 Score=58.09 Aligned_cols=73 Identities=12% Similarity=0.142 Sum_probs=54.4
Q ss_pred CCCCCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-------cCceec--cC------c
Q 024016 2 DAFPIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-------IGVKVL--SD------N 65 (274)
Q Consensus 2 ~~~~~~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-------~g~~~~--~~------~ 65 (274)
.+||..++.++|.|.|+ |.+|+++++.|++.|+ +|++. +|++++.+.+.+ .++... .| .
T Consensus 3 ~~~~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~ 77 (342)
T 1y1p_A 3 IDNAVLPEGSLVLVTGANGFVASHVVEQLLEHGY----KVRGT-ARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAY 77 (342)
T ss_dssp STTCSSCTTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTT
T ss_pred CCcccCCCCCEEEEECCccHHHHHHHHHHHHCCC----EEEEE-eCCcccHHHHHHHhhccCCCceEEEEecCCcChHHH
Confidence 45777777889999987 9999999999999999 99999 999877655432 123321 12 2
Q ss_pred hhhccCCCEEEEee
Q 024016 66 NAVVEYSDVVVFSV 79 (274)
Q Consensus 66 ~~~~~~aDiIil~v 79 (274)
.++++++|+||-+.
T Consensus 78 ~~~~~~~d~vih~A 91 (342)
T 1y1p_A 78 DEVIKGAAGVAHIA 91 (342)
T ss_dssp TTTTTTCSEEEECC
T ss_pred HHHHcCCCEEEEeC
Confidence 34456789999876
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00027 Score=61.95 Aligned_cols=96 Identities=16% Similarity=0.114 Sum_probs=59.4
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEE-EEe-CCCHH-HHHHHHH-----------cCceecc-CchhhccC
Q 024016 8 AESFILGFIG-AGKMAESIAKGVAKSGVLPPDRIC-TAV-HSNLK-RRDAFES-----------IGVKVLS-DNNAVVEY 71 (274)
Q Consensus 8 ~~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~-v~~-~r~~~-~~~~l~~-----------~g~~~~~-~~~~~~~~ 71 (274)
|+++|||||| .|..|.-|.+.|.+.-+ .++. ++. .|+.- +...... ....+.+ +..+..++
T Consensus 17 M~~~kVaIvGAtG~vG~ell~lL~~hp~---~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~~ 93 (381)
T 3hsk_A 17 MSVKKAGVLGATGSVGQRFILLLSKHPE---FEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQECKPEGNFLE 93 (381)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCSS---EEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEESSSCTTGGG
T ss_pred CCccEEEEECCCChHHHHHHHHHHcCCC---ceEEEeeccccccCCCHHHhcccccccccccccccceEEeCchhhhccc
Confidence 4567899999 69999999997766443 2553 321 22221 2221110 1122211 22214678
Q ss_pred CCEEEEeeCcccHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 72 SDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 72 aDiIil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
+|+||+|+|.....++...+. ..|..||+.++...
T Consensus 94 ~Dvvf~alp~~~s~~~~~~~~---~~G~~VIDlSa~fR 128 (381)
T 3hsk_A 94 CDVVFSGLDADVAGDIEKSFV---EAGLAVVSNAKNYR 128 (381)
T ss_dssp CSEEEECCCHHHHHHHHHHHH---HTTCEEEECCSTTT
T ss_pred CCEEEECCChhHHHHHHHHHH---hCCCEEEEcCCccc
Confidence 999999999988888877664 46788999877653
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00017 Score=57.09 Aligned_cols=66 Identities=14% Similarity=0.143 Sum_probs=47.7
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec----cC---chhhccCCCEEEEeeC
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL----SD---NNAVVEYSDVVVFSVK 80 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~----~~---~~~~~~~aDiIil~v~ 80 (274)
.|+|.|+|+ |.+|+.+++.|++.|+ +|++. +|++++.+.+...++... .+ ..++++++|+||.+..
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~ 76 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQAGY----EVTVL-VRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLG 76 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC----eEEEE-EeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECcc
Confidence 379999987 9999999999999999 99999 998876543212233221 12 2345667898888764
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00053 Score=57.83 Aligned_cols=91 Identities=19% Similarity=0.267 Sum_probs=60.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cC----------ceeccCchhhccCCCEEE
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG----------VKVLSDNNAVVEYSDVVV 76 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g----------~~~~~~~~~~~~~aDiIi 76 (274)
.+.+++.|+|+|.+|.+++..|.+.| +|+++ +|++++++.+.+ .+ +.+ .+..+...++|+||
T Consensus 126 l~~k~vlV~GaGgiG~aia~~L~~~G-----~V~v~-~r~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~~~~~~DilV 198 (287)
T 1nvt_A 126 VKDKNIVIYGAGGAARAVAFELAKDN-----NIIIA-NRTVEKAEALAKEIAEKLNKKFGEEVKF-SGLDVDLDGVDIII 198 (287)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHTSSS-----EEEEE-CSSHHHHHHHHHHHHHHHTCCHHHHEEE-ECTTCCCTTCCEEE
T ss_pred cCCCEEEEECchHHHHHHHHHHHHCC-----CEEEE-ECCHHHHHHHHHHHhhhcccccceeEEE-eeHHHhhCCCCEEE
Confidence 34578999999999999999999887 79999 999988877754 11 122 22245567899999
Q ss_pred EeeCcccHHHHH-HHh--ccccCCCCEEEEec
Q 024016 77 FSVKPQVVKDVA-MQI--RPLLSRKKLLVSVA 105 (274)
Q Consensus 77 l~v~~~~~~~v~-~~i--~~~l~~~~~vis~~ 105 (274)
.+++.......- ..+ ...++++.+++++.
T Consensus 199 n~ag~~~~~~~~~~~~~~~~~l~~~~~v~Dv~ 230 (287)
T 1nvt_A 199 NATPIGMYPNIDVEPIVKAEKLREDMVVMDLI 230 (287)
T ss_dssp ECSCTTCTTCCSSCCSSCSTTCCSSSEEEECC
T ss_pred ECCCCCCCCCCCCCCCCCHHHcCCCCEEEEee
Confidence 998754321100 001 12355666777664
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00056 Score=57.58 Aligned_cols=76 Identities=12% Similarity=0.198 Sum_probs=58.0
Q ss_pred CCCCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccH
Q 024016 6 IPAESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVV 84 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~-mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~ 84 (274)
.....+++.|||.|+ +|..++..|...|. +|+++ +++. .+..+.+++||+||.+++...+
T Consensus 161 i~l~gk~vvVIG~s~iVG~p~A~lL~~~gA----tVtv~-hs~t--------------~~L~~~~~~ADIVI~Avg~p~~ 221 (301)
T 1a4i_A 161 VPIAGRHAVVVGRSKIVGAPMHDLLLWNNA----TVTTC-HSKT--------------AHLDEEVNKGDILVVATGQPEM 221 (301)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHHHTTC----EEEEE-CTTC--------------SSHHHHHTTCSEEEECCCCTTC
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHhCCC----eEEEE-ECCc--------------ccHHHHhccCCEEEECCCCccc
Confidence 344568999999996 69999999999997 99999 7542 3566788999999999964321
Q ss_pred HHHHHHhccccCCCCEEEEec
Q 024016 85 KDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~ 105 (274)
+. ...+++|.+||++.
T Consensus 222 ---I~--~~~vk~GavVIDVg 237 (301)
T 1a4i_A 222 ---VK--GEWIKPGAIVIDCG 237 (301)
T ss_dssp ---BC--GGGSCTTCEEEECC
T ss_pred ---CC--HHHcCCCcEEEEcc
Confidence 11 12367899999873
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0005 Score=57.46 Aligned_cols=74 Identities=15% Similarity=0.183 Sum_probs=56.4
Q ss_pred CCCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHH
Q 024016 7 PAESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (274)
Q Consensus 7 ~~~~~~IgiIG~G~-mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~ 85 (274)
+...+++.|||.|. +|.+++..|...|. +|+++ ++.. .+..+.+++||+||.+++...+
T Consensus 158 ~l~Gk~vvVvGrs~iVG~plA~lL~~~gA----tVtv~-hs~T--------------~~L~~~~~~ADIVI~Avg~p~~- 217 (286)
T 4a5o_A 158 DLYGMDAVVVGASNIVGRPMALELLLGGC----TVTVT-HRFT--------------RDLADHVSRADLVVVAAGKPGL- 217 (286)
T ss_dssp CCTTCEEEEECTTSTTHHHHHHHHHHTTC----EEEEE-CTTC--------------SCHHHHHHTCSEEEECCCCTTC-
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCC----eEEEE-eCCC--------------cCHHHHhccCCEEEECCCCCCC-
Confidence 44568999999876 89999999999998 99999 7632 2456778899999999963221
Q ss_pred HHHHHhccccCCCCEEEEe
Q 024016 86 DVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~ 104 (274)
+. ...+++|.+||++
T Consensus 218 --I~--~~~vk~GavVIDv 232 (286)
T 4a5o_A 218 --VK--GEWIKEGAIVIDV 232 (286)
T ss_dssp --BC--GGGSCTTCEEEEC
T ss_pred --CC--HHHcCCCeEEEEe
Confidence 11 1346899998886
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00016 Score=63.01 Aligned_cols=95 Identities=15% Similarity=0.226 Sum_probs=58.9
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHH
Q 024016 10 SFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 10 ~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v 87 (274)
++||+||| .|..|.-|.+.|.+.+| +..++.....++. .+.-.+......+..-..+..+++|+||+|+|.....+.
T Consensus 2 ~~kVaIvGATG~vG~eLlrlL~~~~~-p~~el~~~as~~saG~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~s~~~ 80 (366)
T 3pwk_A 2 GYTVAVVGATGAVGAQMIKMLEESTL-PIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSSTSAKY 80 (366)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCC-CEEEEEEEECTTTTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHHHHHH
T ss_pred CcEEEEECCCChHHHHHHHHHhcCCC-CcEEEEEEEccccCCCcceecCCCceEeeCCHHHhcCCCEEEECCChHhHHHH
Confidence 46999999 79999999998888765 3234444412221 111001111122211112345789999999998887777
Q ss_pred HHHhccccCCCCEEEEecCCC
Q 024016 88 AMQIRPLLSRKKLLVSVAAGV 108 (274)
Q Consensus 88 ~~~i~~~l~~~~~vis~~~g~ 108 (274)
...+. ..|..+|+.++..
T Consensus 81 a~~~~---~~G~~vIDlSa~~ 98 (366)
T 3pwk_A 81 APYAV---KAGVVVVDNTSYF 98 (366)
T ss_dssp HHHHH---HTTCEEEECSSTT
T ss_pred HHHHH---HCCCEEEEcCCcc
Confidence 76654 4677899987754
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00014 Score=60.94 Aligned_cols=63 Identities=14% Similarity=0.278 Sum_probs=46.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-------ccCchhhccC-CCEEEEee
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-------LSDNNAVVEY-SDVVVFSV 79 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~-------~~~~~~~~~~-aDiIil~v 79 (274)
|++|||.|.|+|.+|+.+++.|++.|+ +|++. +|++++.. .++.. ..+..++++. +|+||-+.
T Consensus 1 M~~~~ilVtGaG~iG~~l~~~L~~~g~----~V~~~-~r~~~~~~----~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a 71 (286)
T 3gpi_A 1 MSLSKILIAGCGDLGLELARRLTAQGH----EVTGL-RRSAQPMP----AGVQTLIADVTRPDTLASIVHLRPEILVYCV 71 (286)
T ss_dssp -CCCCEEEECCSHHHHHHHHHHHHTTC----CEEEE-ECTTSCCC----TTCCEEECCTTCGGGCTTGGGGCCSEEEECH
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCccccc----cCCceEEccCCChHHHHHhhcCCCCEEEEeC
Confidence 456799999999999999999999999 99999 88876531 22221 1122344555 99999876
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00063 Score=56.22 Aligned_cols=78 Identities=17% Similarity=0.176 Sum_probs=51.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------------------HHHHHHHH------cCcee--c
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRDAFES------IGVKV--L 62 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-------------------~~~~~l~~------~g~~~--~ 62 (274)
..+|.|||+|.+|+.++.+|...|. .+++++ |++. .|++.+++ .++.+ .
T Consensus 28 ~~~VlvvG~GglG~~va~~La~~Gv---g~i~lv-D~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~ 103 (251)
T 1zud_1 28 DSQVLIIGLGGLGTPAALYLAGAGV---GTLVLA-DDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTAL 103 (251)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHTTC---SEEEEE-CCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred cCcEEEEccCHHHHHHHHHHHHcCC---CeEEEE-eCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEE
Confidence 4699999999999999999999997 378888 6643 33433332 23322 1
Q ss_pred c------CchhhccCCCEEEEeeCcccHHHHHHHh
Q 024016 63 S------DNNAVVEYSDVVVFSVKPQVVKDVAMQI 91 (274)
Q Consensus 63 ~------~~~~~~~~aDiIil~v~~~~~~~v~~~i 91 (274)
. +..+.++++|+||.|++....+..+.+.
T Consensus 104 ~~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~ 138 (251)
T 1zud_1 104 QQRLTGEALKDAVARADVVLDCTDNMATRQEINAA 138 (251)
T ss_dssp CSCCCHHHHHHHHHHCSEEEECCSSHHHHHHHHHH
T ss_pred eccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHH
Confidence 1 1234456788888888655555555443
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0015 Score=56.58 Aligned_cols=94 Identities=15% Similarity=0.129 Sum_probs=56.8
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeC-C-CHHHHHHHHH----cC-------------------cee
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVH-S-NLKRRDAFES----IG-------------------VKV 61 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~-r-~~~~~~~l~~----~g-------------------~~~ 61 (274)
.+.++||||+|.|.+|.-+.+.|.+... -+|...++ + +.+....+.+ .| +.+
T Consensus 14 ~~~~ikVgI~G~G~iGr~llR~l~~~p~---veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v 90 (354)
T 3cps_A 14 LYFQGTLGINGFGRIGRLVLRACMERND---ITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKV 90 (354)
T ss_dssp ----CEEEEECCSHHHHHHHHHHHTCSS---CEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEE
T ss_pred cCcceEEEEECCCHHHHHHHHHHHcCCC---eEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEE
Confidence 3456799999999999999999887632 27766635 3 3333323322 11 112
Q ss_pred c--cCchhhc---cCCCEEEEeeCcccHHHHHHHhccccCCCC--EEEEecC
Q 024016 62 L--SDNNAVV---EYSDVVVFSVKPQVVKDVAMQIRPLLSRKK--LLVSVAA 106 (274)
Q Consensus 62 ~--~~~~~~~---~~aDiIil~v~~~~~~~v~~~i~~~l~~~~--~vis~~~ 106 (274)
. .++.++- .++|+||.|++...-.+..... +..|. +|||..+
T Consensus 91 ~~~~dp~~i~w~~~~vDvV~eatg~~~s~e~a~~~---l~~GakkvVId~pa 139 (354)
T 3cps_A 91 FQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLH---LKGGAKKVIISAPP 139 (354)
T ss_dssp ECCSCGGGCCHHHHTCCEEEECSSSCCSHHHHGGG---GTTTCSEEEESSCC
T ss_pred EecCChHHCCcccCCCCEEEECCCchhhHHHHHHH---HHcCCcEEEEeCCC
Confidence 2 1344431 4799999999988776666544 44555 7887643
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0012 Score=56.87 Aligned_cols=99 Identities=11% Similarity=0.085 Sum_probs=62.3
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCCCC---CcEEEEeCCCH--HHH----HHHHHc------CceeccCchhhccCCC
Q 024016 10 SFILGFIG-AGKMAESIAKGVAKSGVLPP---DRICTAVHSNL--KRR----DAFESI------GVKVLSDNNAVVEYSD 73 (274)
Q Consensus 10 ~~~IgiIG-~G~mG~~~a~~L~~~g~~~~---~~v~v~~~r~~--~~~----~~l~~~------g~~~~~~~~~~~~~aD 73 (274)
.+||.|+| +|.+|++++..|...|.+.. -.+.++ |+++ +++ .+|... ++...++..+.+++||
T Consensus 3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~-Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~~~daD 81 (333)
T 5mdh_A 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLL-DITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLD 81 (333)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEE-CCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCS
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEE-eCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHHhCCCC
Confidence 36999999 79999999999998876331 128888 9864 222 223321 1234455567789999
Q ss_pred EEEEee--C--cc------------cHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 74 VVVFSV--K--PQ------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 74 iIil~v--~--~~------------~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
+||++- | |. .++++++.+..+-.++..++..++++.
T Consensus 82 vVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNPvd 133 (333)
T 5mdh_A 82 VAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPAN 133 (333)
T ss_dssp EEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCchH
Confidence 999975 2 11 134455555555433434666666654
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00098 Score=58.13 Aligned_cols=101 Identities=17% Similarity=0.188 Sum_probs=62.0
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCCCC-CcEEEE-eCCCH--HHHH----HHHH--c----CceeccCchhhccCCCE
Q 024016 10 SFILGFIG-AGKMAESIAKGVAKSGVLPP-DRICTA-VHSNL--KRRD----AFES--I----GVKVLSDNNAVVEYSDV 74 (274)
Q Consensus 10 ~~~IgiIG-~G~mG~~~a~~L~~~g~~~~-~~v~v~-~~r~~--~~~~----~l~~--~----g~~~~~~~~~~~~~aDi 74 (274)
.+||+||| +|.+|.+++..|...+.+.. .++.++ .+..+ ++++ +|.. . .+.+.++..+.+++||+
T Consensus 32 ~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~~y~~~~daDv 111 (375)
T 7mdh_A 32 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDW 111 (375)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred CCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecCCHHHhCCCCE
Confidence 46999999 79999999999998887542 226554 04322 2222 2222 1 23445566788999999
Q ss_pred EEEee--C--ccc------------HHHHHHHhccccCCCCEEEEecCCCCH
Q 024016 75 VVFSV--K--PQV------------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (274)
Q Consensus 75 Iil~v--~--~~~------------~~~v~~~i~~~l~~~~~vis~~~g~~~ 110 (274)
||++- | |.. ++++...+..+..|+.+++-+++++..
T Consensus 112 VVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD~ 163 (375)
T 7mdh_A 112 ALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNT 163 (375)
T ss_dssp EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhH
Confidence 99974 2 211 223333444443577788877776543
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0004 Score=58.13 Aligned_cols=75 Identities=15% Similarity=0.192 Sum_probs=57.1
Q ss_pred CCCCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccH
Q 024016 6 IPAESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVV 84 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~-mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~ 84 (274)
.....+++.|||.|+ +|..++..|...|. +|+++ +++. .+..+.+++||+||.+++...+
T Consensus 155 i~l~gk~vvVIG~s~iVG~p~A~lL~~~gA----tVtv~-hs~t--------------~~L~~~~~~ADIVI~Avg~p~l 215 (288)
T 1b0a_A 155 IDTFGLNAVVIGASNIVGRPMSMELLLAGC----TTTVT-HRFT--------------KNLRHHVENADLLIVAVGKPGF 215 (288)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHHTTTC----EEEEE-CSSC--------------SCHHHHHHHCSEEEECSCCTTC
T ss_pred CCCCCCEEEEECCChHHHHHHHHHHHHCCC----eEEEE-eCCc--------------hhHHHHhccCCEEEECCCCcCc
Confidence 345668999999997 59999999999987 99999 7553 3556778899999999973321
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
+. ...+++|.+||++
T Consensus 216 ---I~--~~~vk~GavVIDV 230 (288)
T 1b0a_A 216 ---IP--GDWIKEGAIVIDV 230 (288)
T ss_dssp ---BC--TTTSCTTCEEEEC
T ss_pred ---CC--HHHcCCCcEEEEc
Confidence 11 1235789998886
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00018 Score=58.02 Aligned_cols=67 Identities=15% Similarity=0.212 Sum_probs=49.6
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec-------cCchhhccCCCEEEEeeC
Q 024016 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-------SDNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 9 ~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~-------~~~~~~~~~aDiIil~v~ 80 (274)
++|||.|.| +|.+|+.+++.|++.|+ +|++. +|++++.+.+. .++... .+..++++++|+||-+..
T Consensus 3 ~m~~ilItGatG~iG~~l~~~L~~~g~----~V~~~-~r~~~~~~~~~-~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~ 76 (227)
T 3dhn_A 3 KVKKIVLIGASGFVGSALLNEALNRGF----EVTAV-VRHPEKIKIEN-EHLKVKKADVSSLDEVCEVCKGADAVISAFN 76 (227)
T ss_dssp CCCEEEEETCCHHHHHHHHHHHHTTTC----EEEEE-CSCGGGCCCCC-TTEEEECCCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCC----EEEEE-EcCcccchhcc-CceEEEEecCCCHHHHHHHhcCCCEEEEeCc
Confidence 357999998 59999999999999999 99999 99987654332 233221 123356778999999874
Q ss_pred c
Q 024016 81 P 81 (274)
Q Consensus 81 ~ 81 (274)
+
T Consensus 77 ~ 77 (227)
T 3dhn_A 77 P 77 (227)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0015 Score=56.25 Aligned_cols=88 Identities=10% Similarity=0.043 Sum_probs=59.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec-cC---c---hhh-ccCCCEEEEeeCc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SD---N---NAV-VEYSDVVVFSVKP 81 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~-~~---~---~~~-~~~aDiIil~v~~ 81 (274)
.++|.|+|+|.+|..+++.|.+.| .|++. ++++++.+ +.+.+..+. .| . .++ ++++|.+++++++
T Consensus 115 ~~~viI~G~G~~g~~l~~~L~~~g-----~v~vi-d~~~~~~~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~ 187 (336)
T 1lnq_A 115 SRHVVICGWSESTLECLRELRGSE-----VFVLA-EDENVRKK-VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLES 187 (336)
T ss_dssp -CEEEEESCCHHHHHHHTTGGGSC-----EEEEE-SCGGGHHH-HHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSS
T ss_pred cCCEEEECCcHHHHHHHHHHHhCC-----cEEEE-eCChhhhh-HHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCc
Confidence 358999999999999999998876 37788 99999998 777666432 12 1 122 6689999999987
Q ss_pred ccHHHHHHHhccccCCCCEEEEe
Q 024016 82 QVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 82 ~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
+...-..-.....+.++..++.-
T Consensus 188 d~~n~~~~~~ar~~~~~~~iiar 210 (336)
T 1lnq_A 188 DSETIHCILGIRKIDESVRIIAE 210 (336)
T ss_dssp HHHHHHHHHHHHTTCTTSEEEEE
T ss_pred cHHHHHHHHHHHHHCCCCeEEEE
Confidence 64333322333334565444543
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00075 Score=56.93 Aligned_cols=77 Identities=21% Similarity=0.249 Sum_probs=53.5
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCC------HHHHHHHH---HcCceec----cC---chhhccCC
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSN------LKRRDAFE---SIGVKVL----SD---NNAVVEYS 72 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~------~~~~~~l~---~~g~~~~----~~---~~~~~~~a 72 (274)
+++|.|+|+ |.+|+++++.|++.|+ +|++. .|+ +++.+.+. ..|+.+. .+ ..++++++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~----~V~~l-~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~ 78 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGH----PTFLL-VRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNV 78 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTC----CEEEE-CCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCC----CEEEE-ECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCC
Confidence 578999986 9999999999999998 99999 887 34443332 3465432 12 23456789
Q ss_pred CEEEEeeCcc---cHHHHHHHh
Q 024016 73 DVVVFSVKPQ---VVKDVAMQI 91 (274)
Q Consensus 73 DiIil~v~~~---~~~~v~~~i 91 (274)
|+||.+.... ....+++..
T Consensus 79 d~vi~~a~~~~~~~~~~l~~aa 100 (308)
T 1qyc_A 79 DVVISTVGSLQIESQVNIIKAI 100 (308)
T ss_dssp SEEEECCCGGGSGGGHHHHHHH
T ss_pred CEEEECCcchhhhhHHHHHHHH
Confidence 9999998643 234444443
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0013 Score=56.51 Aligned_cols=89 Identities=11% Similarity=0.211 Sum_probs=58.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------------------HHHHHHH----H--cCcee--c
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRDAFE----S--IGVKV--L 62 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-------------------~~~~~l~----~--~g~~~--~ 62 (274)
..||.|||+|..|+.++++|...|. .+++++ |++. .|++.++ + .++.+ .
T Consensus 34 ~~~VlIvGaGGlGs~va~~La~aGV---g~Itlv-D~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~v~v~~~ 109 (340)
T 3rui_A 34 NTKVLLLGAGTLGCYVSRALIAWGV---RKITFV-DNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGV 109 (340)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC---CEEEEE-CCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC---CEEEEe-cCCEeccccccccccCChhhcChHHHHHHHHHHHHhCCCCEEEEE
Confidence 4799999999999999999999997 378888 7643 2333333 2 23332 1
Q ss_pred c---------------------CchhhccCCCEEEEeeCcccHHHHHHHhccccCCCCEEEEe
Q 024016 63 S---------------------DNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 63 ~---------------------~~~~~~~~aDiIil~v~~~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
. +..+.++++|+||.|+.....+..+..+... .++.+|+.
T Consensus 110 ~~~i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~tDn~~tR~lin~~c~~--~~~plI~a 170 (340)
T 3rui_A 110 KLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNI--ENKTVINA 170 (340)
T ss_dssp CCCCCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSTGGGHHHHHHHHH--TTCEEEEE
T ss_pred eccccccCcccchhhhhcCCHHHHHhhhccCCEEEecCCCHHHHHHHHHHHHH--cCCcEEEe
Confidence 1 1234567899999999766566555554422 34456653
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00078 Score=56.39 Aligned_cols=65 Identities=15% Similarity=0.076 Sum_probs=50.6
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHHcCceec----cC---chhhccCCCEEEEeeC
Q 024016 11 FILGFIG-AGKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESIGVKVL----SD---NNAVVEYSDVVVFSVK 80 (274)
Q Consensus 11 ~~IgiIG-~G~mG~~~a~~L~~~-g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~----~~---~~~~~~~aDiIil~v~ 80 (274)
|||.|.| +|.+|+.+++.|.+. |+ +|++. .|++++.+.+...++.+. .+ ..++++++|+||.+..
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~----~V~~~-~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 74 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHID----HFHIG-VRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPS 74 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCT----TEEEE-ESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCC----cEEEE-ECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence 5899998 599999999999987 88 99999 999887766555555432 12 2446778999999874
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0011 Score=56.14 Aligned_cols=66 Identities=15% Similarity=0.250 Sum_probs=49.4
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCC-----HHHHHHHH---HcCceec----cC---chhhccCCC
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSN-----LKRRDAFE---SIGVKVL----SD---NNAVVEYSD 73 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~-----~~~~~~l~---~~g~~~~----~~---~~~~~~~aD 73 (274)
+|+|.|+|+ |.+|+++++.|++.|+ +|++. +|+ +++.+.+. ..++.+. .+ ..++++++|
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~----~V~~~-~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d 78 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGH----PTYVL-FRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVD 78 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTC----CEEEE-CCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCS
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCC----cEEEE-ECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCC
Confidence 578999985 9999999999999998 99999 898 45554432 3455432 12 345677899
Q ss_pred EEEEeeC
Q 024016 74 VVVFSVK 80 (274)
Q Consensus 74 iIil~v~ 80 (274)
+||.+..
T Consensus 79 ~vi~~a~ 85 (313)
T 1qyd_A 79 VVISALA 85 (313)
T ss_dssp EEEECCC
T ss_pred EEEECCc
Confidence 9999874
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00082 Score=57.11 Aligned_cols=78 Identities=17% Similarity=0.223 Sum_probs=54.0
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH-HHHH---HHHcCceec----cC---chhhccCCCEEEE
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLK-RRDA---FESIGVKVL----SD---NNAVVEYSDVVVF 77 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~-~~~~---l~~~g~~~~----~~---~~~~~~~aDiIil 77 (274)
+++|.|+|+ |.+|+++++.|++.|+ +|++. +|+++ +.+. +...|+.+. .+ ..++++++|+||.
T Consensus 11 ~~~ilVtGatG~iG~~l~~~L~~~g~----~V~~l-~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~ 85 (318)
T 2r6j_A 11 KSKILIFGGTGYIGNHMVKGSLKLGH----PTYVF-TRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVIS 85 (318)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTC----CEEEE-ECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred CCeEEEECCCchHHHHHHHHHHHCCC----cEEEE-ECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEE
Confidence 358999985 9999999999999999 99999 88764 3332 334565432 12 3356778999999
Q ss_pred eeCcc---cHHHHHHHhc
Q 024016 78 SVKPQ---VVKDVAMQIR 92 (274)
Q Consensus 78 ~v~~~---~~~~v~~~i~ 92 (274)
+.... ....+++...
T Consensus 86 ~a~~~~~~~~~~l~~aa~ 103 (318)
T 2r6j_A 86 ALAFPQILDQFKILEAIK 103 (318)
T ss_dssp CCCGGGSTTHHHHHHHHH
T ss_pred CCchhhhHHHHHHHHHHH
Confidence 88642 3445554433
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0011 Score=59.59 Aligned_cols=66 Identities=17% Similarity=0.174 Sum_probs=51.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH----HHHHHHHHcCceec--cCchhhccC-CCEEEEee
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL----KRRDAFESIGVKVL--SDNNAVVEY-SDVVVFSV 79 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~----~~~~~l~~~g~~~~--~~~~~~~~~-aDiIil~v 79 (274)
+.+||.|||.|..|.+.|+.|.+.|+ +|+++ |+++ ...+.|.+.|+.+. .++.+...+ +|+|+++.
T Consensus 8 ~~k~v~viG~G~sG~s~A~~l~~~G~----~V~~~-D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~sp 80 (451)
T 3lk7_A 8 ENKKVLVLGLARSGEAAARLLAKLGA----IVTVN-DGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNP 80 (451)
T ss_dssp TTCEEEEECCTTTHHHHHHHHHHTTC----EEEEE-ESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECT
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCC----EEEEE-eCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECC
Confidence 45799999999999999999999999 99999 8754 23566777888764 233445566 89999874
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0019 Score=55.13 Aligned_cols=66 Identities=18% Similarity=0.341 Sum_probs=47.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCC--CHHHHHH----HHH----c--Cceecc---CchhhccCCCE
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHS--NLKRRDA----FES----I--GVKVLS---DNNAVVEYSDV 74 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r--~~~~~~~----l~~----~--g~~~~~---~~~~~~~~aDi 74 (274)
|||.|+|+ |.+|++++..|+..|+. .++.++ |+ ++++++. +.. . .+.+.. +..++++++|+
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~--~el~L~-Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~gaD~ 77 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFM--KDLVLI-GREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDV 77 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTC--CEEEEE-ECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSE
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCC--CEEEEE-cCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCCCE
Confidence 58999999 99999999999988752 368888 98 7654432 222 1 223332 13678999999
Q ss_pred EEEee
Q 024016 75 VVFSV 79 (274)
Q Consensus 75 Iil~v 79 (274)
||++-
T Consensus 78 Vi~~A 82 (313)
T 1hye_A 78 VIITS 82 (313)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 99986
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00026 Score=61.66 Aligned_cols=90 Identities=10% Similarity=0.062 Sum_probs=50.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc--CceeccCchhhcc----------------
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--GVKVLSDNNAVVE---------------- 70 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~--g~~~~~~~~~~~~---------------- 70 (274)
+++||||||+|.||+.+++.|.+..+-...+|...+++++.. +.+. |+..+++..++++
T Consensus 3 k~i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~~~---~~~~~~gi~~~~~~~e~l~~~~~~~~did~v~e~~ 79 (358)
T 1ebf_A 3 KVVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSL---ISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHL 79 (358)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEE---ECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHH
T ss_pred ceEEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEECChhh---hccccCCCCccccHHHHHhcccCCCCCHHHHHHHh
Confidence 457999999999999999999886300001443332654321 1111 4333233333322
Q ss_pred ----CCCEEEEeeCcccHHHHHHHhccccCCCCEEEEe
Q 024016 71 ----YSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 71 ----~aDiIil~v~~~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
..|+|+.|+|.......+ ...+..|+-||+.
T Consensus 80 ~~~~~~DvVV~~t~~~~~a~~~---~~AL~aGkhVVta 114 (358)
T 1ebf_A 80 KTSPKPVILVDNTSSAYIAGFY---TKFVENGISIATP 114 (358)
T ss_dssp TTCSSCEEEEECSCCHHHHTTH---HHHHHTTCEEECC
T ss_pred hhccCCcEEEEcCCChHHHHHH---HHHHHCCCeEEec
Confidence 237899999865432222 2335567777753
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00029 Score=56.58 Aligned_cols=63 Identities=13% Similarity=0.221 Sum_probs=47.5
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-----cc---CchhhccCCCEEEEeeC
Q 024016 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-----LS---DNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 11 ~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~-----~~---~~~~~~~~aDiIil~v~ 80 (274)
|||.|.| +|.+|+.+++.|++.|+ +|++. +|++++.+.+ .++.. .+ +..++++++|+||-+..
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~----~V~~~-~R~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag 72 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDY----QIYAG-ARKVEQVPQY--NNVKAVHFDVDWTPEEMAKQLHGMDAIINVSG 72 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSC----EEEEE-ESSGGGSCCC--TTEEEEECCTTSCHHHHHTTTTTCSEEEECCC
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCC----EEEEE-ECCccchhhc--CCceEEEecccCCHHHHHHHHcCCCEEEECCc
Confidence 5899998 79999999999999999 99999 9998765433 22221 11 22345678999998874
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0007 Score=58.00 Aligned_cols=66 Identities=17% Similarity=0.235 Sum_probs=48.8
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec----cC---chhhccCCCEEEEee
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL----SD---NNAVVEYSDVVVFSV 79 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~----~~---~~~~~~~aDiIil~v 79 (274)
++|||.|.|+ |.+|+++++.|++.|+ +|++. +|++.+.+.+...++... .+ ..++++++|+||-+.
T Consensus 12 ~~M~ilVtGatG~iG~~l~~~L~~~g~----~V~~~-~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a 85 (342)
T 2x4g_A 12 AHVKYAVLGATGLLGHHAARAIRAAGH----DLVLI-HRPSSQIQRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSA 85 (342)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC-
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-ecChHhhhhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECC
Confidence 3469999985 9999999999999999 99999 898776655543344321 12 234567899999876
|
| >1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0037 Score=53.69 Aligned_cols=92 Identities=14% Similarity=0.086 Sum_probs=58.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC-CHHHHHHHHHc--------C--------ce-------ec--cC
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFESI--------G--------VK-------VL--SD 64 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r-~~~~~~~l~~~--------g--------~~-------~~--~~ 64 (274)
+||||+|.|.+|.-+.+.|.++.. -+|...+++ +++....+.+. + +. +. .+
T Consensus 2 ikVgI~G~G~iG~~l~R~l~~~~~---veiv~i~~~~~~~~~a~l~~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~d 78 (330)
T 1gad_O 2 IKVGINGFGRIGRIVFRAAQKRSD---IEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERD 78 (330)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCSS---EEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSS
T ss_pred eEEEEECcCHHHHHHHHHHHcCCC---eEEEEEcCCCChhHHhHhhcccccCCCCCCeEEEcCCEEEECCEEEEEEEcCC
Confidence 589999999999999999887643 256555355 34444444331 1 10 11 12
Q ss_pred chhhc---cCCCEEEEeeCcccHHHHHHHhccccCCCCEEEEecCCC
Q 024016 65 NNAVV---EYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGV 108 (274)
Q Consensus 65 ~~~~~---~~aDiIil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~ 108 (274)
+.++- .++|+||.|+|...-.+...... ..|..+|++++..
T Consensus 79 p~~i~w~~~~vDvVf~atg~~~s~e~a~~~l---~~GakvVdlSa~~ 122 (330)
T 1gad_O 79 PANLKWDEVGVDVVAEATGLFLTDETARKHI---TAGAKKVVMTGPS 122 (330)
T ss_dssp GGGGCHHHHTCSEEEECSSSCCSHHHHTHHH---HTTCSEEEESSCC
T ss_pred hhhCccccccCCEEEECCCccccHHHHHHHH---HCCCEEEEECCCC
Confidence 33321 47999999999887666665443 3566667776654
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0015 Score=54.94 Aligned_cols=66 Identities=14% Similarity=0.280 Sum_probs=49.7
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCC-CCCCCcEEEEeCCCHHHH--HHHHHcCceec----cC---chhhccCCCEEEEe
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSG-VLPPDRICTAVHSNLKRR--DAFESIGVKVL----SD---NNAVVEYSDVVVFS 78 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g-~~~~~~v~v~~~r~~~~~--~~l~~~g~~~~----~~---~~~~~~~aDiIil~ 78 (274)
+++|.|.|+ |.+|+++++.|++.| + +|++. +|++++. +.+...++.+. .+ ..++++++|+||.+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~----~V~~~-~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~ 79 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTF----KVRVV-TRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIV 79 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSS----EEEEE-ESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCc----eEEEE-EcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEe
Confidence 478999987 999999999999988 8 99999 8887653 34444565432 12 23456789999998
Q ss_pred eC
Q 024016 79 VK 80 (274)
Q Consensus 79 v~ 80 (274)
..
T Consensus 80 a~ 81 (299)
T 2wm3_A 80 TN 81 (299)
T ss_dssp CC
T ss_pred CC
Confidence 75
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0014 Score=55.20 Aligned_cols=77 Identities=17% Similarity=0.236 Sum_probs=53.8
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------HHHHHH---HHcCceec----cC---chhhccC
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNL-------KRRDAF---ESIGVKVL----SD---NNAVVEY 71 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-------~~~~~l---~~~g~~~~----~~---~~~~~~~ 71 (274)
+++|.|.|+ |.+|+++++.|++.|+ +|++. +|++ ++.+.+ ...++.+. .+ ..+++++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~----~V~~~-~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~ 76 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGN----PTYAL-VRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQ 76 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTC----CEEEE-ECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTT
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCC----cEEEE-ECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhC
Confidence 468999986 9999999999999999 99998 8876 555433 23465432 12 2345678
Q ss_pred CCEEEEeeCcc---cHHHHHHHh
Q 024016 72 SDVVVFSVKPQ---VVKDVAMQI 91 (274)
Q Consensus 72 aDiIil~v~~~---~~~~v~~~i 91 (274)
+|+||.+.... ....+++..
T Consensus 77 ~d~vi~~a~~~~~~~~~~l~~aa 99 (307)
T 2gas_A 77 VDIVICAAGRLLIEDQVKIIKAI 99 (307)
T ss_dssp CSEEEECSSSSCGGGHHHHHHHH
T ss_pred CCEEEECCcccccccHHHHHHHH
Confidence 99999988542 334444433
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0012 Score=57.06 Aligned_cols=101 Identities=15% Similarity=0.242 Sum_probs=64.8
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH--HHHHHHHH---cCceecc-CchhhccCCCEEEEeeCcc
Q 024016 10 SFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNL--KRRDAFES---IGVKVLS-DNNAVVEYSDVVVFSVKPQ 82 (274)
Q Consensus 10 ~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~--~~~~~l~~---~g~~~~~-~~~~~~~~aDiIil~v~~~ 82 (274)
+.||+||| .|..|.-|.+.|.+... .++....+++. ++....-. ....+.. +..+...++|++|+|+|..
T Consensus 13 ~~~V~IvGAtG~vG~ellrlL~~hP~---~el~~l~S~~~aG~~~~~~~p~~~~~l~~~~~~~~~~~~~~Dvvf~alp~~ 89 (351)
T 1vkn_A 13 MIRAGIIGATGYTGLELVRLLKNHPE---AKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAG 89 (351)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTT---EEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTT
T ss_pred eeEEEEECCCCHHHHHHHHHHHcCCC---cEEEEEeCcccccCChHHhChhhccCceEEeCCHHHhhcCCCEEEECCCcH
Confidence 46899996 59999999999987643 35655523321 12221110 1222221 3334447899999999999
Q ss_pred cHHHHHHHhccccCCCCEEEEecCCCCH---HHHHHhhC
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSVAAGVKL---KDLQEWTG 118 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~~~g~~~---~~l~~~~~ 118 (274)
...++...+ .|..||+.++.... +..++|++
T Consensus 90 ~s~~~~~~~-----~g~~VIDlSsdfRl~~~~~y~~~y~ 123 (351)
T 1vkn_A 90 ASYDLVREL-----KGVKIIDLGADFRFDDPGVYREWYG 123 (351)
T ss_dssp HHHHHHTTC-----CSCEEEESSSTTTCSSHHHHHHHHC
T ss_pred HHHHHHHHh-----CCCEEEECChhhhCCchhhhhhhcC
Confidence 888877654 67899999876543 44566664
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0032 Score=58.08 Aligned_cols=89 Identities=11% Similarity=0.200 Sum_probs=58.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------------------HHHHHHH----H--cCceec--
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRDAFE----S--IGVKVL-- 62 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-------------------~~~~~l~----~--~g~~~~-- 62 (274)
..||.|||+|.+|+.++.+|...|. .+++++ |.+. .|++.++ + .++.+.
T Consensus 326 ~arVLIVGaGGLGs~vA~~La~aGV---G~ItLv-D~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iNP~V~v~~~ 401 (615)
T 4gsl_A 326 NTKVLLLGAGTLGCYVSRALIAWGV---RKITFV-DNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGV 401 (615)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC---CEEEEE-CCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---CEEEEE-cCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhCCCcEEEEe
Confidence 4699999999999999999999997 378888 7753 2333333 2 233321
Q ss_pred c---------------------CchhhccCCCEEEEeeCcccHHHHHHHhccccCCCCEEEEe
Q 024016 63 S---------------------DNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 63 ~---------------------~~~~~~~~aDiIil~v~~~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
. +..+.++++|+||.|+.....+..+..+... .++.+|+.
T Consensus 402 ~~~Ipm~gh~v~~e~~~~l~~~~l~~ll~~~DlVvd~tDn~~tR~~ln~~c~~--~~~PlI~a 462 (615)
T 4gsl_A 402 KLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNI--ENKTVINA 462 (615)
T ss_dssp CCCCCCTTCCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSGGGTHHHHHHHHH--TTCEEEEE
T ss_pred eccccccCccccchhhhcCCHHHHHHHhhcCCEEEecCCCHHHHHHHHHHHHH--cCCeEEEE
Confidence 1 1234567899999999766666666554422 34556653
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00078 Score=58.20 Aligned_cols=93 Identities=13% Similarity=0.216 Sum_probs=58.3
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH--HHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHH
Q 024016 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLK--RRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 11 ~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~--~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v 87 (274)
+||+||| .|..|.-|.+.|.++.| +..++.....++.. +.. +......+.....+..+++|+||+|+|.....+.
T Consensus 2 ~~VaIvGatG~vG~el~~lL~~h~f-p~~el~~~~s~~~aG~~~~-~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~s~~~ 79 (344)
T 3tz6_A 2 LSIGIVGATGQVGQVMRTLLDERDF-PASAVRFFASARSQGRKLA-FRGQEIEVEDAETADPSGLDIALFSAGSAMSKVQ 79 (344)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTC-CEEEEEEEECTTTSSCEEE-ETTEEEEEEETTTSCCTTCSEEEECSCHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-CceEEEEEECcccCCCcee-ecCCceEEEeCCHHHhccCCEEEECCChHHHHHH
Confidence 5899999 79999999998887754 22245544122211 111 1111122211112345789999999998887777
Q ss_pred HHHhccccCCCCEEEEecCCC
Q 024016 88 AMQIRPLLSRKKLLVSVAAGV 108 (274)
Q Consensus 88 ~~~i~~~l~~~~~vis~~~g~ 108 (274)
...+. ..|..+|+.++..
T Consensus 80 a~~~~---~~G~~vID~Sa~~ 97 (344)
T 3tz6_A 80 APRFA---AAGVTVIDNSSAW 97 (344)
T ss_dssp HHHHH---HTTCEEEECSSTT
T ss_pred HHHHH---hCCCEEEECCCcc
Confidence 76654 4678899987654
|
| >2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0031 Score=54.36 Aligned_cols=91 Identities=12% Similarity=0.128 Sum_probs=55.7
Q ss_pred CeEEEEcccHHHHHHHHHHHh---C-CCCCCCcEEEEeCC-CHHHHHHHHH----c-----------------C--ceec
Q 024016 11 FILGFIGAGKMAESIAKGVAK---S-GVLPPDRICTAVHS-NLKRRDAFES----I-----------------G--VKVL 62 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~---~-g~~~~~~v~v~~~r-~~~~~~~l~~----~-----------------g--~~~~ 62 (274)
+||||+|.|++|..+.+.|.+ + .+ +|...+++ +++....+.+ . | +.+.
T Consensus 3 ikVgI~G~G~iGr~l~r~l~~~~~~~~~----eivai~~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~ 78 (339)
T 2x5j_O 3 VRVAINGFGRIGRNVVRALYESGRRAEI----TVVAINELADAAGMAHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRVL 78 (339)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTSGGGTE----EEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEE
T ss_pred eEEEEECcCHHHHHHHHHHHcCCCCCCE----EEEEEeCCCCHHHHHHHhcccccCCCCCceEEEcCCeeEECCEEEEEE
Confidence 599999999999999999987 4 33 66555354 4455444442 1 1 1111
Q ss_pred --cCchhh-cc--CCCEEEEeeCcccHHHHHHHhccccCCCCEEEEecC
Q 024016 63 --SDNNAV-VE--YSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 63 --~~~~~~-~~--~aDiIil~v~~~~~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
.++.+. .. ++|+||.|++.....+........ ...++|||..+
T Consensus 79 ~~~dp~~l~~~~~~vDvV~e~tg~~~s~e~a~~~l~~-GakkVVId~~a 126 (339)
T 2x5j_O 79 HERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAA-GAKKVLFSHPG 126 (339)
T ss_dssp CCSSGGGCCHHHHTCSEEEECSSSCCSHHHHHHHHHT-TCSEEEESSCC
T ss_pred ecCChHHCcccccCCCEEEECCCccccHHHHHHHHHc-CCCEEEEeccc
Confidence 233332 12 799999999987766666554332 12235676543
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0021 Score=59.44 Aligned_cols=90 Identities=13% Similarity=0.066 Sum_probs=61.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceecc---Cc----hhhccCCCEEEEeeCccc
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLS---DN----NAVVEYSDVVVFSVKPQV 83 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~---~~----~~~~~~aDiIil~v~~~~ 83 (274)
++|.|+|+|.+|..+++.|.+.|+ +|.+. ++++++.+.+. ..+.. +. ..-++++|.++++++++.
T Consensus 349 ~~viIiG~G~~G~~la~~L~~~g~----~v~vi-d~d~~~~~~~~---~~i~gD~t~~~~L~~agi~~ad~vi~~~~~d~ 420 (565)
T 4gx0_A 349 ELIFIIGHGRIGCAAAAFLDRKPV----PFILI-DRQESPVCNDH---VVVYGDATVGQTLRQAGIDRASGIIVTTNDDS 420 (565)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTC----CEEEE-ESSCCSSCCSS---CEEESCSSSSTHHHHHTTTSCSEEEECCSCHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC----CEEEE-ECChHHHhhcC---CEEEeCCCCHHHHHhcCccccCEEEEECCCch
Confidence 689999999999999999999999 99999 99998776543 11111 11 112578999999998775
Q ss_pred HHHHHHHhccccCCCCEEEEecCCC
Q 024016 84 VKDVAMQIRPLLSRKKLLVSVAAGV 108 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~~~g~ 108 (274)
..-++..+...+.+...+|.-....
T Consensus 421 ~ni~~~~~ak~l~~~~~iiar~~~~ 445 (565)
T 4gx0_A 421 TNIFLTLACRHLHSHIRIVARANGE 445 (565)
T ss_dssp HHHHHHHHHHHHCSSSEEEEEESST
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCH
Confidence 4333333344455664455444433
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0019 Score=57.90 Aligned_cols=91 Identities=11% Similarity=0.124 Sum_probs=54.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec-----cC-----chhhccCCCEEEEeeC
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-----SD-----NNAVVEYSDVVVFSVK 80 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~-----~~-----~~~~~~~aDiIil~v~ 80 (274)
+||.|||+|.||+.++..|.++.-+...+|++. ++.....+.....|++.. .+ ...++++.|+||-+.+
T Consensus 14 ~rVlIIGaGgVG~~va~lla~~~dv~~~~I~va-D~~~~~~~~~~~~g~~~~~~~Vdadnv~~~l~aLl~~~DvVIN~s~ 92 (480)
T 2ph5_A 14 NRFVILGFGCVGQALMPLIFEKFDIKPSQVTII-AAEGTKVDVAQQYGVSFKLQQITPQNYLEVIGSTLEENDFLIDVSI 92 (480)
T ss_dssp SCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEE-ESSCCSCCHHHHHTCEEEECCCCTTTHHHHTGGGCCTTCEEEECCS
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCCceeEEEEe-ccchhhhhHHhhcCCceeEEeccchhHHHHHHHHhcCCCEEEECCc
Confidence 689999999999999999988753233478888 876554332222343221 12 1234444577776666
Q ss_pred cccHHHHHHHhccccCCCCEEEEec
Q 024016 81 PQVVKDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 81 ~~~~~~v~~~i~~~l~~~~~vis~~ 105 (274)
+....++++... ..|..+++++
T Consensus 93 ~~~~l~Im~acl---eaGv~YlDTa 114 (480)
T 2ph5_A 93 GISSLALIILCN---QKGALYINAA 114 (480)
T ss_dssp SSCHHHHHHHHH---HHTCEEEESS
T ss_pred cccCHHHHHHHH---HcCCCEEECC
Confidence 665555544322 2445566654
|
| >3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0037 Score=53.86 Aligned_cols=93 Identities=13% Similarity=0.118 Sum_probs=55.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC-CHHHHHHHHH----c-----------------C--cee--ccC
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFES----I-----------------G--VKV--LSD 64 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r-~~~~~~~l~~----~-----------------g--~~~--~~~ 64 (274)
+||||+|.|++|+.+.+.|.+++. +.-+|...+++ +++....+.+ . | +.+ ..+
T Consensus 3 ikVgI~G~G~IGr~v~r~l~~~~~-~~~evvaInd~~~~~~~~~l~~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~d 81 (339)
T 3b1j_A 3 IRVAINGFGRIGRNFLRCWFGRQN-TDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRN 81 (339)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCSC-CSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCSC
T ss_pred eEEEEECCCHHHHHHHHHHHhcCC-CCeEEEEEecCCCHHHHHHHhccccccCCCCCcEEEcCCeeeecCceEEEEecCC
Confidence 599999999999999999987620 01166555355 5555544432 1 1 111 123
Q ss_pred chhhc---cCCCEEEEeeCcccHHHHHHHhccccCCCCEEEEec
Q 024016 65 NNAVV---EYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 65 ~~~~~---~~aDiIil~v~~~~~~~v~~~i~~~l~~~~~vis~~ 105 (274)
+.++. .++|+||.|++.....+........ ...++|||..
T Consensus 82 p~~l~w~~~~vDvV~e~tg~~~s~e~a~~~l~~-GakkVVId~~ 124 (339)
T 3b1j_A 82 PLNLPWKEWDIDLVIESTGVFVTAEGASKHIQA-GAKKVLITAP 124 (339)
T ss_dssp GGGSCTTTTTCCEEEECSSSCCBHHHHHHHHHT-TCSEEEESSC
T ss_pred hHHCcccccCCCEEEECCCccccHHHHHHHHHc-CCcEEEEeCC
Confidence 44432 2789999999877766665544322 1223466653
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.002 Score=54.64 Aligned_cols=78 Identities=13% Similarity=0.138 Sum_probs=54.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCH------HHHHHH---HHcCceec----cC---chhhccCC
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNL------KRRDAF---ESIGVKVL----SD---NNAVVEYS 72 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~------~~~~~l---~~~g~~~~----~~---~~~~~~~a 72 (274)
+|+|.|+|+ |.+|+++++.|++.|+ +|++. +|++ ++.+.+ ...++.+. .+ ..++++++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~----~V~~~-~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~ 78 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSFSH----PTFIY-ARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQV 78 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTC----CEEEE-ECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTC
T ss_pred ccEEEEEcCCchhHHHHHHHHHhCCC----cEEEE-ECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCC
Confidence 568999985 9999999999999999 99999 8875 344333 23455432 12 34567789
Q ss_pred CEEEEeeCc---ccHHHHHHHhc
Q 024016 73 DVVVFSVKP---QVVKDVAMQIR 92 (274)
Q Consensus 73 DiIil~v~~---~~~~~v~~~i~ 92 (274)
|+||.+... .....+++...
T Consensus 79 d~vi~~a~~~~~~~~~~l~~aa~ 101 (321)
T 3c1o_A 79 DIVISALPFPMISSQIHIINAIK 101 (321)
T ss_dssp SEEEECCCGGGSGGGHHHHHHHH
T ss_pred CEEEECCCccchhhHHHHHHHHH
Confidence 999998853 23445554443
|
| >3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0033 Score=54.03 Aligned_cols=89 Identities=15% Similarity=0.151 Sum_probs=55.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC-CHHHHHHHHH----cC-------------------ceec--cC
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFES----IG-------------------VKVL--SD 64 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r-~~~~~~~l~~----~g-------------------~~~~--~~ 64 (274)
+||||+|.|.+|.-+.+.|.++.. -+|...+++ +++....+.+ .| +.+. .+
T Consensus 2 ikVgI~G~G~iGr~l~R~l~~~~~---veivain~~~~~~~~~~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~d 78 (334)
T 3cmc_O 2 VKVGINGFGRIGRNVFRAALKNPD---IEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERD 78 (334)
T ss_dssp EEEEEESCSHHHHHHHHHHTTCTT---EEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSS
T ss_pred eEEEEECCCHHHHHHHHHHhCCCC---eEEEEEeCCCCHHHHHHHhccCCcCCCcCceEEEccCcEEECCEEEEEEecCC
Confidence 589999999999999998877632 256555355 4444444442 11 1122 13
Q ss_pred chhh-cc--CCCEEEEeeCcccHHHHHHHhccccCCCC--EEEEec
Q 024016 65 NNAV-VE--YSDVVVFSVKPQVVKDVAMQIRPLLSRKK--LLVSVA 105 (274)
Q Consensus 65 ~~~~-~~--~aDiIil~v~~~~~~~v~~~i~~~l~~~~--~vis~~ 105 (274)
+.+. .. ++|+||.|++...-.+...... ..|. +|||..
T Consensus 79 p~~i~w~~~~vDvV~~atg~~~s~e~a~~~l---~~Gak~vVId~p 121 (334)
T 3cmc_O 79 PENLAWGEIGVDIVVESTGRFTKREDAAKHL---EAGAKKVIISAP 121 (334)
T ss_dssp GGGCCTGGGTCCEEEECSSSCCBHHHHTHHH---HTTCSEEEESSC
T ss_pred hhhcCcccCccCEEEECCCchhhHHHHHHHH---HCCCCEEEEeCC
Confidence 3332 22 7999999999877666665543 3344 788754
|
| >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0046 Score=55.59 Aligned_cols=89 Identities=20% Similarity=0.240 Sum_probs=68.4
Q ss_pred CCCeEEEEccc----HHHHHHHHHHHhCC-CCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCccc
Q 024016 9 ESFILGFIGAG----KMAESIAKGVAKSG-VLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV 83 (274)
Q Consensus 9 ~~~~IgiIG~G----~mG~~~a~~L~~~g-~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~ 83 (274)
+.++|+|||++ ++|..+.++|.+.| + .|+.. |...... .|..++.+..++-+..|++++++|++.
T Consensus 7 ~p~siAVvGas~~~~~~g~~v~~~l~~~g~~----~v~pV-nP~~~~i-----~G~~~y~sl~~lp~~~Dlavi~vp~~~ 76 (457)
T 2csu_A 7 NPKGIAVIGASNDPKKLGYEVFKNLKEYKKG----KVYPV-NIKEEEV-----QGVKAYKSVKDIPDEIDLAIIVVPKRF 76 (457)
T ss_dssp SCSEEEEETCCSCTTSHHHHHHHHHTTCCSS----EEEEE-CSSCSEE-----TTEECBSSTTSCSSCCSEEEECSCHHH
T ss_pred CCCeEEEECcCCCCCchHHHHHHHHHHcCCC----EEEEE-CCCCCeE-----CCEeccCCHHHcCCCCCEEEEecCHHH
Confidence 45689999998 89999999999885 4 78777 6653221 588888888888778999999999999
Q ss_pred HHHHHHHhccccCCCCEEEEecCCCC
Q 024016 84 VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
+.+++++.... .. +.++-.+.|++
T Consensus 77 ~~~~v~e~~~~-Gi-~~vv~~s~G~~ 100 (457)
T 2csu_A 77 VKDTLIQCGEK-GV-KGVVIITAGFG 100 (457)
T ss_dssp HHHHHHHHHHH-TC-CEEEECCCSST
T ss_pred HHHHHHHHHHc-CC-CEEEEecCCCC
Confidence 99999886643 22 34555666663
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0025 Score=53.54 Aligned_cols=44 Identities=14% Similarity=0.135 Sum_probs=38.3
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH
Q 024016 8 AESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (274)
Q Consensus 8 ~~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~ 56 (274)
++.+++.|+| +|-+|.+++..|.+.|+ +|+++ +|++++.+.+.+
T Consensus 117 l~gk~vlVtGaaGGiG~aia~~L~~~G~----~V~i~-~R~~~~~~~l~~ 161 (287)
T 1lu9_A 117 VKGKKAVVLAGTGPVGMRSAALLAGEGA----EVVLC-GRKLDKAQAAAD 161 (287)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcC----EEEEE-ECCHHHHHHHHH
Confidence 3457899999 99999999999999998 89999 999988776654
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0014 Score=57.17 Aligned_cols=93 Identities=16% Similarity=0.212 Sum_probs=55.6
Q ss_pred CeEEEEc-ccHHHHHHHHHHHh-CCCCCCCcEEEEeCCCHHH-HHHHHHcCceec--cCchhhccCCCEEEEeeCcccHH
Q 024016 11 FILGFIG-AGKMAESIAKGVAK-SGVLPPDRICTAVHSNLKR-RDAFESIGVKVL--SDNNAVVEYSDVVVFSVKPQVVK 85 (274)
Q Consensus 11 ~~IgiIG-~G~mG~~~a~~L~~-~g~~~~~~v~v~~~r~~~~-~~~l~~~g~~~~--~~~~~~~~~aDiIil~v~~~~~~ 85 (274)
+||+|+| .|.+|..+.+.++. ..+ +...++....++..+ ...+....+.+. .++.+ ++++|+||.|+|.....
T Consensus 2 ~kVaIvGAtG~vG~~llr~ll~~~~~-~~v~i~~~~~~s~G~~v~~~~g~~i~~~~~~~~~~-~~~~DvVf~a~g~~~s~ 79 (367)
T 1t4b_A 2 QNVGFIGWRGMVGSVLMQRMVEERDF-DAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEA-LKALDIIVTCQGGDYTN 79 (367)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGG-GGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHH-HHTCSEEEECSCHHHHH
T ss_pred cEEEEECCCCHHHHHHHHHHHhcCCC-CeEEEEEEEeCCCCCCccccCCCceEEEecCChHH-hcCCCEEEECCCchhHH
Confidence 6999999 99999999995544 433 112454441333211 101111122222 12333 57899999999988877
Q ss_pred HHHHHhccccCCC--CEEEEecCCC
Q 024016 86 DVAMQIRPLLSRK--KLLVSVAAGV 108 (274)
Q Consensus 86 ~v~~~i~~~l~~~--~~vis~~~g~ 108 (274)
+....+.. .| .+||+.++..
T Consensus 80 ~~a~~~~~---~G~k~vVID~ss~~ 101 (367)
T 1t4b_A 80 EIYPKLRE---SGWQGYWIDAASSL 101 (367)
T ss_dssp HHHHHHHH---TTCCCEEEECSSTT
T ss_pred HHHHHHHH---CCCCEEEEcCChhh
Confidence 77766543 34 3889876653
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0025 Score=54.63 Aligned_cols=70 Identities=17% Similarity=0.229 Sum_probs=47.3
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCC---CCCcEEEEeCCCH--HHHH----HHHHc------CceeccCchhhccCC
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVL---PPDRICTAVHSNL--KRRD----AFESI------GVKVLSDNNAVVEYS 72 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~---~~~~v~v~~~r~~--~~~~----~l~~~------g~~~~~~~~~~~~~a 72 (274)
+.|||.|+|+ |.+|++++..|++.|+. ...+|.++ |+.+ ++.+ .+... .+....+..++++++
T Consensus 3 ~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~-D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~~~~ 81 (327)
T 1y7t_A 3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLL-EIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDA 81 (327)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEE-CCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEE-eCCCchhhccchhhhhhcccccccCCeEeccChHHHhCCC
Confidence 3469999996 99999999999998852 11278899 9874 2222 22211 122223456678899
Q ss_pred CEEEEee
Q 024016 73 DVVVFSV 79 (274)
Q Consensus 73 DiIil~v 79 (274)
|+||.+-
T Consensus 82 D~Vih~A 88 (327)
T 1y7t_A 82 DYALLVG 88 (327)
T ss_dssp SEEEECC
T ss_pred CEEEECC
Confidence 9999874
|
| >2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0044 Score=54.04 Aligned_cols=80 Identities=11% Similarity=0.082 Sum_probs=49.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC-CHHHHHHHHH----c-----------------C--cee--ccC
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFES----I-----------------G--VKV--LSD 64 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r-~~~~~~~l~~----~-----------------g--~~~--~~~ 64 (274)
+||||+|.|++|+.+.+.|.+++. +.-+|...+++ +++....+.+ . | +.+ ..+
T Consensus 3 ikVgInGfGrIGr~vlR~l~~~~~-~~veIVaInd~~d~~~~a~ll~yds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~d 81 (380)
T 2d2i_A 3 IRVAINGFGRIGRNFLRCWFGRQN-TDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRN 81 (380)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCSS-CSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCSC
T ss_pred cEEEEECcCHHHHHHHHHHhcCCC-CCEEEEEEecCCCHHHHHHhhcccccCCCCCCcEEEeCCeEEECCeEEEEEecCC
Confidence 599999999999999999887620 01166555354 4555444443 1 1 111 123
Q ss_pred chhhc---cCCCEEEEeeCcccHHHHHHHh
Q 024016 65 NNAVV---EYSDVVVFSVKPQVVKDVAMQI 91 (274)
Q Consensus 65 ~~~~~---~~aDiIil~v~~~~~~~v~~~i 91 (274)
+.++. .++|+||.|++.....+.....
T Consensus 82 p~~l~w~~~gvDvV~e~TG~f~s~e~a~~h 111 (380)
T 2d2i_A 82 PLNLPWKEWDIDLVIESTGVFVTAEGASKH 111 (380)
T ss_dssp GGGCCHHHHTCCEEEECSSSCCBHHHHHHH
T ss_pred hHHCCcccCCCCEEEECCCccccHHHHHHH
Confidence 33432 2789999999877665555443
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0017 Score=54.98 Aligned_cols=62 Identities=15% Similarity=0.225 Sum_probs=45.1
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee------ccCchhhccCCCEEEEee
Q 024016 10 SFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV------LSDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 10 ~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~------~~~~~~~~~~aDiIil~v 79 (274)
+|||.|.| +|.+|+.+++.|++.|+ +|++. +|++.+.+ +. ++.. ..+..++++++|+||-+.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~----~V~~~-~r~~~~~~-~~--~~~~~~~Dl~~~~~~~~~~~~d~Vih~a 70 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGN----TPIIL-TRSIGNKA-IN--DYEYRVSDYTLEDLINQLNDVDAVVHLA 70 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCCC--------CCEEEECCCCHHHHHHHTTTCSEEEECC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCC----EEEEE-eCCCCccc-CC--ceEEEEccccHHHHHHhhcCCCEEEEcc
Confidence 36899998 69999999999999999 99999 88855444 43 3221 233455677999999876
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.006 Score=51.36 Aligned_cols=35 Identities=14% Similarity=0.393 Sum_probs=30.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
..||.|||+|.+|+.++.+|...|. .+++++ |.+.
T Consensus 36 ~~~VlVvGaGGlGs~va~~La~aGV---G~i~lv-D~D~ 70 (292)
T 3h8v_A 36 TFAVAIVGVGGVGSVTAEMLTRCGI---GKLLLF-DYDK 70 (292)
T ss_dssp GCEEEEECCSHHHHHHHHHHHHHTC---SEEEEE-CCCB
T ss_pred CCeEEEECcCHHHHHHHHHHHHcCC---CEEEEE-CCCc
Confidence 4689999999999999999999996 378888 7765
|
| >2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00091 Score=57.59 Aligned_cols=91 Identities=13% Similarity=0.150 Sum_probs=56.3
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH--HcCceecc-CchhhccCCCEEEEeeCcccHHH
Q 024016 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE--SIGVKVLS-DNNAVVEYSDVVVFSVKPQVVKD 86 (274)
Q Consensus 11 ~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~--~~g~~~~~-~~~~~~~~aDiIil~v~~~~~~~ 86 (274)
|||+|+| .|.+|..+.+.|.+.+| +...+.....++.+. +.+. ...+.+.. ++.+ + ++|+||.|++.....+
T Consensus 1 mkVaI~GAtG~iG~~llr~L~~~~~-~~~~l~~~~s~~~~g-~~l~~~g~~i~v~~~~~~~-~-~~DvV~~a~g~~~s~~ 76 (331)
T 2yv3_A 1 MRVAVVGATGAVGREILKVLEARNF-PLSELRLYASPRSAG-VRLAFRGEEIPVEPLPEGP-L-PVDLVLASAGGGISRA 76 (331)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTC-CCSCCEEEECGGGSS-CEEEETTEEEEEEECCSSC-C-CCSEEEECSHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-CcEEEEEeeccccCC-CEEEEcCceEEEEeCChhh-c-CCCEEEECCCccchHH
Confidence 5899999 99999999999987666 333444331221100 0000 01122221 3333 4 8999999999887777
Q ss_pred HHHHhccccCCCCEEEEecCCC
Q 024016 87 VAMQIRPLLSRKKLLVSVAAGV 108 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~~g~ 108 (274)
....+. ..|..+|+.++..
T Consensus 77 ~a~~~~---~~G~~vId~s~~~ 95 (331)
T 2yv3_A 77 KALVWA---EGGALVVDNSSAW 95 (331)
T ss_dssp HHHHHH---HTTCEEEECSSSS
T ss_pred HHHHHH---HCCCEEEECCCcc
Confidence 666553 4577899887654
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0017 Score=54.09 Aligned_cols=65 Identities=17% Similarity=0.289 Sum_probs=50.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhC--CCCCCCcEEEEeCCCHHHHHHHHHcCceec----cC---chhhccCCCEEEEeeC
Q 024016 11 FILGFIGA-GKMAESIAKGVAKS--GVLPPDRICTAVHSNLKRRDAFESIGVKVL----SD---NNAVVEYSDVVVFSVK 80 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~--g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~----~~---~~~~~~~aDiIil~v~ 80 (274)
|+|.|.|+ |.+|+++++.|++. |+ +|++. +|++++.+.+...++... .+ ..++++++|+||-+..
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~----~V~~~-~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 75 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPAS----QIIAI-VRNVEKASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISG 75 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGG----GEEEE-ESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCC----eEEEE-EcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCC
Confidence 47889986 99999999999998 88 99999 998887776655555321 12 2345678999998764
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0026 Score=51.73 Aligned_cols=66 Identities=12% Similarity=0.112 Sum_probs=48.2
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhC--CCCCCCcEEEEeCCCHHHHHHHHHcCcee-c---c---CchhhccCCCEEEE
Q 024016 8 AESFILGFIG-AGKMAESIAKGVAKS--GVLPPDRICTAVHSNLKRRDAFESIGVKV-L---S---DNNAVVEYSDVVVF 77 (274)
Q Consensus 8 ~~~~~IgiIG-~G~mG~~~a~~L~~~--g~~~~~~v~v~~~r~~~~~~~l~~~g~~~-~---~---~~~~~~~~aDiIil 77 (274)
+++++|.|.| .|.+|+.+++.|++. |+ +|++. +|++++.+.+ ..++.. . . +..++++++|+||-
T Consensus 2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~----~V~~~-~r~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~d~vi~ 75 (253)
T 1xq6_A 2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKF----VAKGL-VRSAQGKEKI-GGEADVFIGDITDADSINPAFQGIDALVI 75 (253)
T ss_dssp CSCCEEEEESTTSHHHHHHHHHHHHTTTTC----EEEEE-ESCHHHHHHT-TCCTTEEECCTTSHHHHHHHHTTCSEEEE
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCCc----EEEEE-EcCCCchhhc-CCCeeEEEecCCCHHHHHHHHcCCCEEEE
Confidence 3567899997 599999999999999 78 99999 9998776554 222221 1 1 22345678899998
Q ss_pred ee
Q 024016 78 SV 79 (274)
Q Consensus 78 ~v 79 (274)
+.
T Consensus 76 ~a 77 (253)
T 1xq6_A 76 LT 77 (253)
T ss_dssp CC
T ss_pred ec
Confidence 75
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0035 Score=54.06 Aligned_cols=75 Identities=11% Similarity=0.179 Sum_probs=52.2
Q ss_pred CCCCCCCCCCeEEEEc-ccHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHH----cCceec----cC---chhh
Q 024016 2 DAFPIPAESFILGFIG-AGKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFES----IGVKVL----SD---NNAV 68 (274)
Q Consensus 2 ~~~~~~~~~~~IgiIG-~G~mG~~~a~~L~~~-g~~~~~~v~v~~~r~~~~~~~l~~----~g~~~~----~~---~~~~ 68 (274)
+.+...++.++|.|.| +|.+|+.+++.|++. |+ .+|+++ +|++.+.+.+.+ .++... .+ ..++
T Consensus 13 ~~~~~~~~~k~vlVTGatG~iG~~l~~~L~~~~g~---~~V~~~-~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~ 88 (344)
T 2gn4_A 13 PNHQNMLDNQTILITGGTGSFGKCFVRKVLDTTNA---KKIIVY-SRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYA 88 (344)
T ss_dssp ---CCTTTTCEEEEETTTSHHHHHHHHHHHHHCCC---SEEEEE-ESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHH
T ss_pred ccHHHhhCCCEEEEECCCcHHHHHHHHHHHhhCCC---CEEEEE-ECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHH
Confidence 4455556678999998 599999999999998 84 289999 999887766543 233321 12 2345
Q ss_pred ccCCCEEEEeeC
Q 024016 69 VEYSDVVVFSVK 80 (274)
Q Consensus 69 ~~~aDiIil~v~ 80 (274)
++++|+||-+..
T Consensus 89 ~~~~D~Vih~Aa 100 (344)
T 2gn4_A 89 LEGVDICIHAAA 100 (344)
T ss_dssp TTTCSEEEECCC
T ss_pred HhcCCEEEECCC
Confidence 678999998763
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.01 Score=53.42 Aligned_cols=85 Identities=16% Similarity=0.245 Sum_probs=60.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--cCceec-cC---c----hhhccCCCEEEEee
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--IGVKVL-SD---N----NAVVEYSDVVVFSV 79 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~--~g~~~~-~~---~----~~~~~~aDiIil~v 79 (274)
.++|-|+|.|++|..+|+.|. .++ +|.+. .+++++++.+.+ .+..+. .| . ++-++++|+++.++
T Consensus 235 ~~~v~I~GgG~ig~~lA~~L~-~~~----~v~iI-E~d~~r~~~la~~l~~~~Vi~GD~td~~~L~ee~i~~~D~~ia~T 308 (461)
T 4g65_A 235 YRRIMIVGGGNIGASLAKRLE-QTY----SVKLI-ERNLQRAEKLSEELENTIVFCGDAADQELLTEENIDQVDVFIALT 308 (461)
T ss_dssp CCEEEEECCSHHHHHHHHHHT-TTS----EEEEE-ESCHHHHHHHHHHCTTSEEEESCTTCHHHHHHTTGGGCSEEEECC
T ss_pred ccEEEEEcchHHHHHHHHHhh-hcC----ceEEE-ecCHHHHHHHHHHCCCceEEeccccchhhHhhcCchhhcEEEEcc
Confidence 468999999999999999885 457 89999 999999999887 233332 22 1 22367899999999
Q ss_pred CcccHHHHHHHhccccCCCCE
Q 024016 80 KPQVVKDVAMQIRPLLSRKKL 100 (274)
Q Consensus 80 ~~~~~~~v~~~i~~~l~~~~~ 100 (274)
.++...=+...+...+...++
T Consensus 309 ~~De~Ni~~~llAk~~gv~kv 329 (461)
T 4g65_A 309 NEDETNIMSAMLAKRMGAKKV 329 (461)
T ss_dssp SCHHHHHHHHHHHHHTTCSEE
T ss_pred cCcHHHHHHHHHHHHcCCccc
Confidence 877654444444444444443
|
| >1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0063 Score=52.23 Aligned_cols=91 Identities=12% Similarity=0.094 Sum_probs=56.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC-CHHHHHHHHH----cC-------------------ceec--cC
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFES----IG-------------------VKVL--SD 64 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r-~~~~~~~l~~----~g-------------------~~~~--~~ 64 (274)
.||||+|.|.+|.-+.+.|.+++. +.-+|...+++ +++....+.+ .| +.+. .+
T Consensus 1 ~kVgI~G~G~iGr~llR~l~~~~~-p~~eivain~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~d 79 (332)
T 1hdg_O 1 ARVAINGFGRIGRLVYRIIYERKN-PDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPD 79 (332)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTC-TTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSS
T ss_pred CEEEEEccCHHHHHHHHHHHhCCC-CCeEEEEEEcCCChHHhhhhccCcCcCCCcCCcEEEcCCEEEECCeEEEEEecCC
Confidence 489999999999999999987620 11277655354 4444444442 11 1122 13
Q ss_pred chhh-cc--CCCEEEEeeCcccHHHHHHHhccccCCCC--EEEEec
Q 024016 65 NNAV-VE--YSDVVVFSVKPQVVKDVAMQIRPLLSRKK--LLVSVA 105 (274)
Q Consensus 65 ~~~~-~~--~aDiIil~v~~~~~~~v~~~i~~~l~~~~--~vis~~ 105 (274)
+.++ .. ++|+||.|+|...-.+...... ..|. +|||..
T Consensus 80 p~~l~w~~~~vDvV~~atg~~~s~e~a~~~l---~aGakkvVId~~ 122 (332)
T 1hdg_O 80 PSKLPWKDLGVDFVIESTGVFRNREKAELHL---QAGAKKVIITAP 122 (332)
T ss_dssp GGGSCHHHHTCCEEEECSSSCCBHHHHTHHH---HTTCSEEEESSC
T ss_pred hHHCcccccCCCEEEECCccchhHHHHHHHH---HcCCcEEEEeCC
Confidence 3333 22 7999999999877666665543 3344 788754
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0073 Score=55.63 Aligned_cols=34 Identities=18% Similarity=0.326 Sum_probs=29.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
..||.|||+|.+|+.++.+|...|. .+++++ |.+
T Consensus 327 ~~kVLIVGaGGLGs~va~~La~aGV---G~ItLv-D~D 360 (598)
T 3vh1_A 327 NTKVLLLGAGTLGCYVSRALIAWGV---RKITFV-DNG 360 (598)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTC---CEEEEE-CCS
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---CEEEEE-CCC
Confidence 4699999999999999999999997 378888 654
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0056 Score=50.83 Aligned_cols=64 Identities=16% Similarity=0.326 Sum_probs=48.5
Q ss_pred eEEEEcc-cHHHHHHHHHHHhC--CCCCCCcEEEEeCCCHHHHHHHHHcCceec----cC---chhhccCCCEEEEeeC
Q 024016 12 ILGFIGA-GKMAESIAKGVAKS--GVLPPDRICTAVHSNLKRRDAFESIGVKVL----SD---NNAVVEYSDVVVFSVK 80 (274)
Q Consensus 12 ~IgiIG~-G~mG~~~a~~L~~~--g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~----~~---~~~~~~~aDiIil~v~ 80 (274)
||.|.|+ |.+|+.+++.|++. |+ +|++. +|++++.+.+...++... .+ ..++++++|+||-+..
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~ 74 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPAS----QIVAI-VRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISS 74 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGG----GEEEE-ESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC-
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCc----eEEEE-EcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence 5788886 99999999999998 88 99999 898887766655555321 12 2345678999998763
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0088 Score=53.76 Aligned_cols=78 Identities=14% Similarity=0.239 Sum_probs=55.6
Q ss_pred CCCCCCCCC--CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHH-cCceeccC--chhhccCCCE
Q 024016 1 MDAFPIPAE--SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFES-IGVKVLSD--NNAVVEYSDV 74 (274)
Q Consensus 1 ~~~~~~~~~--~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-~~~~~l~~-~g~~~~~~--~~~~~~~aDi 74 (274)
|..+|...+ .++|.|||.|..|..-++.|++.|. +|+++ +.+. ...+.+.+ .+++.... ..+.+.++|+
T Consensus 1 m~~~P~~~~l~~~~vlVvGgG~va~~k~~~L~~~ga----~V~vi-~~~~~~~~~~l~~~~~i~~~~~~~~~~~l~~~~l 75 (457)
T 1pjq_A 1 MDHLPIFCQLRDRDCLIVGGGDVAERKARLLLEAGA----RLTVN-ALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWL 75 (457)
T ss_dssp CCCEEEEECCBTCEEEEECCSHHHHHHHHHHHHTTB----EEEEE-ESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSE
T ss_pred CCceeeEEECCCCEEEEECCCHHHHHHHHHHHhCcC----EEEEE-cCCCCHHHHHHHhcCCEEEEECCCCccccCCccE
Confidence 555666553 5899999999999999999999998 99999 7643 33444443 34544211 2345678999
Q ss_pred EEEeeCccc
Q 024016 75 VVFSVKPQV 83 (274)
Q Consensus 75 Iil~v~~~~ 83 (274)
||.++.+..
T Consensus 76 Vi~at~~~~ 84 (457)
T 1pjq_A 76 AIAATDDDT 84 (457)
T ss_dssp EEECCSCHH
T ss_pred EEEcCCCHH
Confidence 999986554
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0012 Score=57.44 Aligned_cols=67 Identities=12% Similarity=0.164 Sum_probs=49.2
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHH-cCceec----c-C---chhhccCCCEEE
Q 024016 8 AESFILGFIG-AGKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFES-IGVKVL----S-D---NNAVVEYSDVVV 76 (274)
Q Consensus 8 ~~~~~IgiIG-~G~mG~~~a~~L~~~-g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~----~-~---~~~~~~~aDiIi 76 (274)
|++|||.|.| +|.+|+.+++.|++. |+ +|++. +|++++.+.+.. .++... . + ..++++++|+||
T Consensus 22 m~~~~vlVtGatG~iG~~l~~~L~~~~g~----~V~~~-~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vi 96 (372)
T 3slg_A 22 MKAKKVLILGVNGFIGHHLSKRILETTDW----EVFGM-DMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVIL 96 (372)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHHSSC----EEEEE-ESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEE
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCCC----EEEEE-eCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEE
Confidence 4568999998 699999999999998 88 99999 898877655544 344321 1 2 223556899999
Q ss_pred Eee
Q 024016 77 FSV 79 (274)
Q Consensus 77 l~v 79 (274)
-+.
T Consensus 97 h~A 99 (372)
T 3slg_A 97 PLV 99 (372)
T ss_dssp ECB
T ss_pred EcC
Confidence 764
|
| >1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.013 Score=50.25 Aligned_cols=94 Identities=14% Similarity=0.080 Sum_probs=56.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC-CHHHHHHHHH----c-----------C---------cee--cc
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFES----I-----------G---------VKV--LS 63 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r-~~~~~~~l~~----~-----------g---------~~~--~~ 63 (274)
+||||+|.|.+|..+.+.|.++++ +..+|...++. +++....+.+ . + +.+ ..
T Consensus 2 ikVgInG~G~IGr~llR~l~~~~~-p~~eivaInd~~~~~~~a~ll~sds~~G~~~~~v~~~~~~~l~v~g~~i~v~~~~ 80 (337)
T 1rm4_O 2 LKVAINGFGRIGRNFLRCWHGRKD-SPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDR 80 (337)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCSS-CSEEEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECCS
T ss_pred eEEEEECCCHHHHHHHHHHHhCCC-CCeEEEEEEcCCCHHHHHHHhcccccCCCccceeEEecCCeEEECCeEEEEEecC
Confidence 589999999999999999987632 22256555232 3333333332 1 1 011 12
Q ss_pred Cchhh-cc--CCCEEEEeeCcccHHHHHHHhccccCCCCEEEEecCCC
Q 024016 64 DNNAV-VE--YSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGV 108 (274)
Q Consensus 64 ~~~~~-~~--~aDiIil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~ 108 (274)
++.++ .. ++|+||.|++...-.+...... ..|..+|.+++..
T Consensus 81 dp~~i~w~~~gvDiV~eatg~~~s~e~a~~~l---~~Gak~V~iSap~ 125 (337)
T 1rm4_O 81 NPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHL---QAGAKKVLITAPG 125 (337)
T ss_dssp CGGGSCHHHHTCCEEEECSSSCCBHHHHHHHH---HTTCSEEEESSCC
T ss_pred ChhhCcccccCCCEEEECCCchhhHHHHHHHH---HcCCEEEEECCcc
Confidence 33332 23 7999999999877666665543 3555666666553
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0069 Score=55.03 Aligned_cols=69 Identities=20% Similarity=0.279 Sum_probs=52.2
Q ss_pred CCCeEEEEcccHHHHH-HHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHHcCceecc-CchhhccCCCEEEEe--eCcc
Q 024016 9 ESFILGFIGAGKMAES-IAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIGVKVLS-DNNAVVEYSDVVVFS--VKPQ 82 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~-~a~~L~~~g~~~~~~v~v~~~r~~-~~~~~l~~~g~~~~~-~~~~~~~~aDiIil~--v~~~ 82 (274)
+.++|.|||.|..|.+ +|+.|.+.|+ +|+++ |++. ...+.|.+.|+.+.. ...+.+.++|+|++. +|++
T Consensus 21 ~~~~v~viGiG~sG~s~~A~~l~~~G~----~V~~~-D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~Spgi~~~ 94 (494)
T 4hv4_A 21 RVRHIHFVGIGGAGMGGIAEVLANEGY----QISGS-DLAPNSVTQHLTALGAQIYFHHRPENVLDASVVVVSTAISAD 94 (494)
T ss_dssp -CCEEEEETTTSTTHHHHHHHHHHTTC----EEEEE-CSSCCHHHHHHHHTTCEEESSCCGGGGTTCSEEEECTTSCTT
T ss_pred cCCEEEEEEEcHhhHHHHHHHHHhCCC----eEEEE-ECCCCHHHHHHHHCCCEEECCCCHHHcCCCCEEEECCCCCCC
Confidence 3479999999999986 9999999999 99999 8654 345667778887642 223446789999986 4543
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.009 Score=51.50 Aligned_cols=86 Identities=20% Similarity=0.241 Sum_probs=64.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce-eccCchhhccCCCEEEEeeCcc-cHHHH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK-VLSDNNAVVEYSDVVVFSVKPQ-VVKDV 87 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~-~~~~~~~~~~~aDiIil~v~~~-~~~~v 87 (274)
..+|.|+|+|.+|...++.+...|. +|++. ++++++.+.+.+.|+. +..+..++.+..|+||-|+... .+...
T Consensus 177 g~~VlV~GaG~vG~~a~qla~~~Ga----~Vi~~-~~~~~~~~~~~~lGa~~v~~~~~~~~~~~D~vid~~g~~~~~~~~ 251 (348)
T 3two_A 177 GTKVGVAGFGGLGSMAVKYAVAMGA----EVSVF-ARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHYDLKDY 251 (348)
T ss_dssp TCEEEEESCSHHHHHHHHHHHHTTC----EEEEE-CSSSTTHHHHHHTTCSEEESSGGGCCSCEEEEEECCCSCCCHHHH
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHhcCCCeecCCHHHHhcCCCEEEECCCcHHHHHHH
Confidence 4689999999999999988888898 89999 9999999888888864 2244444444789999999755 66665
Q ss_pred HHHhccccCCCCEEEEe
Q 024016 88 AMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 88 ~~~i~~~l~~~~~vis~ 104 (274)
++-+ +++..++.+
T Consensus 252 ~~~l----~~~G~iv~~ 264 (348)
T 3two_A 252 LKLL----TYNGDLALV 264 (348)
T ss_dssp HTTE----EEEEEEEEC
T ss_pred HHHH----hcCCEEEEE
Confidence 5443 455556654
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.025 Score=52.08 Aligned_cols=68 Identities=10% Similarity=0.111 Sum_probs=53.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc-Cceec-cCc--hh-----hccCCCEEEEeeC
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-GVKVL-SDN--NA-----VVEYSDVVVFSVK 80 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~-g~~~~-~~~--~~-----~~~~aDiIil~v~ 80 (274)
.++|.|+|+|.+|..+++.|.+.|+ +|++. +.++++.+.+.+. |+.+. .|. .+ -+++||.+++ ++
T Consensus 127 ~~hviI~G~g~~g~~la~~L~~~~~----~vvvi-d~~~~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~a~~vi~-t~ 200 (565)
T 4gx0_A 127 RGHILIFGIDPITRTLIRKLESRNH----LFVVV-TDNYDQALHLEEQEGFKVVYGSPTDAHVLAGLRVAAARSIIA-NL 200 (565)
T ss_dssp CSCEEEESCCHHHHHHHHHTTTTTC----CEEEE-ESCHHHHHHHHHSCSSEEEESCTTCHHHHHHTTGGGCSEEEE-CS
T ss_pred CCeEEEECCChHHHHHHHHHHHCCC----CEEEE-ECCHHHHHHHHHhcCCeEEEeCCCCHHHHHhcCcccCCEEEE-eC
Confidence 4689999999999999999999998 99999 9999999988886 76532 221 11 2568999987 55
Q ss_pred ccc
Q 024016 81 PQV 83 (274)
Q Consensus 81 ~~~ 83 (274)
++.
T Consensus 201 ~D~ 203 (565)
T 4gx0_A 201 SDP 203 (565)
T ss_dssp CHH
T ss_pred CcH
Confidence 444
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.016 Score=50.28 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=30.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
..+|.|||+|.+|+.++.+|..+|. .+++++ |++
T Consensus 118 ~~~VlvvG~GglGs~va~~La~aGv---g~i~lv-D~D 151 (353)
T 3h5n_A 118 NAKVVILGCGGIGNHVSVILATSGI---GEIILI-DND 151 (353)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTC---SEEEEE-ECC
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC---CeEEEE-CCC
Confidence 4689999999999999999999997 378888 765
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0075 Score=51.73 Aligned_cols=67 Identities=13% Similarity=0.093 Sum_probs=47.5
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH----HHHHHHHH-------cCceec-c---C---chhhc
Q 024016 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNL----KRRDAFES-------IGVKVL-S---D---NNAVV 69 (274)
Q Consensus 9 ~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~----~~~~~l~~-------~g~~~~-~---~---~~~~~ 69 (274)
++|+|.|.| +|.+|+.+++.|++.|+ +|++. +|++ +..+.+.. .++... . + ..+++
T Consensus 24 ~~~~vlVtGatG~iG~~l~~~L~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 98 (351)
T 3ruf_A 24 SPKTWLITGVAGFIGSNLLEKLLKLNQ----VVIGL-DNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVM 98 (351)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHT
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCCC----EEEEE-eCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHh
Confidence 468999998 59999999999999999 99999 8854 33333332 233321 1 1 23456
Q ss_pred cCCCEEEEeeC
Q 024016 70 EYSDVVVFSVK 80 (274)
Q Consensus 70 ~~aDiIil~v~ 80 (274)
+++|+||-+..
T Consensus 99 ~~~d~Vih~A~ 109 (351)
T 3ruf_A 99 KGVDHVLHQAA 109 (351)
T ss_dssp TTCSEEEECCC
T ss_pred cCCCEEEECCc
Confidence 78999998863
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.012 Score=50.83 Aligned_cols=88 Identities=17% Similarity=0.124 Sum_probs=56.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------------------HHHHH----HHH--cCcee--c
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRDA----FES--IGVKV--L 62 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-------------------~~~~~----l~~--~g~~~--~ 62 (274)
..+|.|||+|..|+.++++|...|. .+++++ |.+. .|++. +.+ .++.+ .
T Consensus 36 ~~~VlivG~GGlG~~ia~~La~~Gv---g~itlv-D~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~ 111 (346)
T 1y8q_A 36 ASRVLLVGLKGLGAEIAKNLILAGV---KGLTML-DHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVD 111 (346)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTC---SEEEEE-CCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---CEEEEE-ECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEE
Confidence 4689999999999999999999997 378887 5431 23333 333 23332 1
Q ss_pred -----cCchhhccCCCEEEEeeCcccHHHHHHHhccccCCCCEEEE
Q 024016 63 -----SDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVS 103 (274)
Q Consensus 63 -----~~~~~~~~~aDiIil~v~~~~~~~v~~~i~~~l~~~~~vis 103 (274)
....+.++++|+||.|+.+...+..+...... .+..+|+
T Consensus 112 ~~~~~~~~~~~~~~~dvVv~~~d~~~~r~~ln~~~~~--~~ip~i~ 155 (346)
T 1y8q_A 112 TEDIEKKPESFFTQFDAVCLTCCSRDVIVKVDQICHK--NSIKFFT 155 (346)
T ss_dssp CSCGGGCCHHHHTTCSEEEEESCCHHHHHHHHHHHHH--TTCEEEE
T ss_pred ecccCcchHHHhcCCCEEEEcCCCHHHHHHHHHHHHH--cCCCEEE
Confidence 12345678899999998766555555554422 2344554
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0021 Score=54.09 Aligned_cols=58 Identities=9% Similarity=0.013 Sum_probs=41.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v 79 (274)
|||.|.|+ |-+|+.+++.|++.|| +|++. .|++.+.+ +.......+.++++|.||=+.
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~----~V~~l-~R~~~~~~------~~~~~~~~~~l~~~d~vihla 59 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGH----EVTLV-SRKPGPGR------ITWDELAASGLPSCDAAVNLA 59 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESSCCTTE------EEHHHHHHHCCCSCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-ECCCCcCe------eecchhhHhhccCCCEEEEec
Confidence 78999987 9999999999999999 99999 88764321 111111123456788887543
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0046 Score=53.45 Aligned_cols=44 Identities=14% Similarity=0.101 Sum_probs=37.4
Q ss_pred CCCCCCCCCCCeEEEEc-ccHHHHHHHHHHHh--CCCCCCCcEEEEeCCCHH
Q 024016 1 MDAFPIPAESFILGFIG-AGKMAESIAKGVAK--SGVLPPDRICTAVHSNLK 49 (274)
Q Consensus 1 ~~~~~~~~~~~~IgiIG-~G~mG~~~a~~L~~--~g~~~~~~v~v~~~r~~~ 49 (274)
|..|+..+++|+|.|.| +|-+|+++++.|++ .|+ +|++. +|++.
T Consensus 1 M~~~~~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~----~V~~~-~r~~~ 47 (362)
T 3sxp_A 1 MRYIDDELENQTILITGGAGFVGSNLAFHFQENHPKA----KVVVL-DKFRS 47 (362)
T ss_dssp CCSSSCCCTTCEEEEETTTSHHHHHHHHHHHHHCTTS----EEEEE-ECCCC
T ss_pred CcccchhcCCCEEEEECCCCHHHHHHHHHHHhhCCCC----eEEEE-ECCCc
Confidence 66677677788999995 59999999999999 899 99999 88653
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0042 Score=51.83 Aligned_cols=35 Identities=14% Similarity=0.269 Sum_probs=31.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
+.++|.|||+|.+|..-++.|++.|+ +|+++ +.+.
T Consensus 12 ~~k~VLVVGgG~va~rka~~Ll~~Ga----~VtVi-ap~~ 46 (274)
T 1kyq_A 12 KDKRILLIGGGEVGLTRLYKLMPTGC----KLTLV-SPDL 46 (274)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTC----EEEEE-EEEE
T ss_pred CCCEEEEECCcHHHHHHHHHHHhCCC----EEEEE-cCCC
Confidence 45899999999999999999999999 99999 6643
|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.011 Score=54.21 Aligned_cols=68 Identities=16% Similarity=0.157 Sum_probs=51.6
Q ss_pred CCeEEEEcccHHHHH-HHHHHHhCCCCCCCcEEEEeCCCH--HHHHHHHHcCceec--cCchhhccCCCEEEEe--eCcc
Q 024016 10 SFILGFIGAGKMAES-IAKGVAKSGVLPPDRICTAVHSNL--KRRDAFESIGVKVL--SDNNAVVEYSDVVVFS--VKPQ 82 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~-~a~~L~~~g~~~~~~v~v~~~r~~--~~~~~l~~~g~~~~--~~~~~~~~~aDiIil~--v~~~ 82 (274)
.++|-|||.|..|.+ +|+-|.+.|+ +|+++ |++. ...+.|.+.|+.+. .++.+...++|+|+.. +|++
T Consensus 19 ~~~i~~iGiGg~Gms~lA~~l~~~G~----~V~~s-D~~~~~~~~~~L~~~gi~~~~G~~~~~~~~~~d~vV~Spgi~~~ 93 (524)
T 3hn7_A 19 GMHIHILGICGTFMGSLALLARALGH----TVTGS-DANIYPPMSTQLEQAGVTIEEGYLIAHLQPAPDLVVVGNAMKRG 93 (524)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCCCTTHHHHHHHTTCEEEESCCGGGGCSCCSEEEECTTCCTT
T ss_pred CCEEEEEEecHhhHHHHHHHHHhCCC----EEEEE-CCCCCcHHHHHHHHCCCEEECCCCHHHcCCCCCEEEECCCcCCC
Confidence 478999999999986 7888899999 99999 8753 34567777888764 2344444679999986 4544
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.003 Score=55.09 Aligned_cols=66 Identities=18% Similarity=0.128 Sum_probs=47.4
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec----cC---chhhccCCCEEEEee
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL----SD---NNAVVEYSDVVVFSV 79 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~----~~---~~~~~~~aDiIil~v 79 (274)
++|+|.|.|+ |.+|+.+++.|++.|+ +|++. +|++.+...+...++... .+ ..++++++|+||-+.
T Consensus 28 ~~~~vlVtGatG~iG~~l~~~L~~~g~----~V~~~-~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A 101 (379)
T 2c5a_A 28 ENLKISITGAGGFIASHIARRLKHEGH----YVIAS-DWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLA 101 (379)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred cCCeEEEECCccHHHHHHHHHHHHCCC----eEEEE-ECCCccchhhccCCceEEECCCCCHHHHHHHhCCCCEEEECc
Confidence 4579999987 9999999999999999 99999 887654332222233321 11 234567899999875
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.023 Score=46.80 Aligned_cols=85 Identities=14% Similarity=0.161 Sum_probs=56.3
Q ss_pred CCCeEEEEcc-c-HHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---Cccc
Q 024016 9 ESFILGFIGA-G-KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQV 83 (274)
Q Consensus 9 ~~~~IgiIG~-G-~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~ 83 (274)
+.+++-|.|. | .+|.++++.|.+.|+ +|++. +|+.++.+.+.+. + .+ ....++.++.. .++.
T Consensus 21 ~~k~vlITGasg~GIG~~~a~~l~~~G~----~V~~~-~r~~~~~~~~~~~-l------~~-~~~~~~~~~~~Dl~~~~~ 87 (266)
T 3o38_A 21 KGKVVLVTAAAGTGIGSTTARRALLEGA----DVVIS-DYHERRLGETRDQ-L------AD-LGLGRVEAVVCDVTSTEA 87 (266)
T ss_dssp TTCEEEESSCSSSSHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-H------HT-TCSSCEEEEECCTTCHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHCCC----EEEEe-cCCHHHHHHHHHH-H------Hh-cCCCceEEEEeCCCCHHH
Confidence 3467888898 8 599999999999999 99999 9998877665431 0 00 01234444444 3455
Q ss_pred HHHHHHHhccccCCCCEEEEecC
Q 024016 84 VKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
++.+++++...+.+=.++|+..+
T Consensus 88 v~~~~~~~~~~~g~id~li~~Ag 110 (266)
T 3o38_A 88 VDALITQTVEKAGRLDVLVNNAG 110 (266)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHhCCCcEEEECCC
Confidence 77777776654444357777643
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.024 Score=46.20 Aligned_cols=89 Identities=19% Similarity=0.227 Sum_probs=56.4
Q ss_pred CCCCCCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---
Q 024016 4 FPIPAESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV--- 79 (274)
Q Consensus 4 ~~~~~~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v--- 79 (274)
||..++.+++-|.| .|.+|.++++.|.+.|+ +|++. +|++++.+.+.+. ..+ ...++.++..
T Consensus 1 m~~~l~~k~~lVTGas~gIG~aia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-------l~~--~~~~~~~~~~Dv~ 66 (247)
T 2jah_A 1 MPSALQGKVALITGASSGIGEATARALAAEGA----AVAIA-ARRVEKLRALGDE-------LTA--AGAKVHVLELDVA 66 (247)
T ss_dssp --CTTTTCEEEEESCSSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHH--TTCCEEEEECCTT
T ss_pred CCccCCCCEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-------HHh--cCCcEEEEECCCC
Confidence 35555666777775 58999999999999999 99999 9998877655431 000 0223444433
Q ss_pred CcccHHHHHHHhccccCCCCEEEEecC
Q 024016 80 KPQVVKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 80 ~~~~~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
.++.++.+++++...+.+=.++|+..+
T Consensus 67 ~~~~~~~~~~~~~~~~g~id~lv~nAg 93 (247)
T 2jah_A 67 DRQGVDAAVASTVEALGGLDILVNNAG 93 (247)
T ss_dssp CHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 345567777766554433356776543
|
| >1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.013 Score=52.84 Aligned_cols=63 Identities=25% Similarity=0.289 Sum_probs=48.8
Q ss_pred CCeEEEEcccHHHHH-HHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHHcCceec--cCchhhccCCCEEEEe
Q 024016 10 SFILGFIGAGKMAES-IAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIGVKVL--SDNNAVVEYSDVVVFS 78 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~-~a~~L~~~g~~~~~~v~v~~~r~~-~~~~~l~~~g~~~~--~~~~~~~~~aDiIil~ 78 (274)
.++|.|||.|..|.+ +|+.|.+.|+ +|+++ |... ...+.|.+.|+.+. .+. +.++++|+|+..
T Consensus 18 ~~~i~viG~G~sG~s~~A~~l~~~G~----~V~~~-D~~~~~~~~~l~~~gi~~~~g~~~-~~~~~a~~vv~s 84 (475)
T 1p3d_A 18 VQQIHFIGIGGAGMSGIAEILLNEGY----QISGS-DIADGVVTQRLAQAGAKIYIGHAE-EHIEGASVVVVS 84 (475)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHHTC----EEEEE-ESCCSHHHHHHHHTTCEEEESCCG-GGGTTCSEEEEC
T ss_pred CCEEEEEeecHHHHHHHHHHHHhCCC----EEEEE-CCCCCHHHHHHHhCCCEEECCCCH-HHcCCCCEEEEC
Confidence 568999999999997 9999999999 99999 7654 33456766787764 223 345789998886
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.18 E-value=0.025 Score=46.66 Aligned_cols=86 Identities=10% Similarity=0.092 Sum_probs=54.1
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccH
Q 024016 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~ 84 (274)
+.+++-|.| .|.+|.++++.|.+.|+ +|++. +|++++.+.+.+. ..+.....++.++.. .++.+
T Consensus 12 ~~k~vlVTGas~gIG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-------~~~~~~~~~~~~~~~D~~~~~~v 79 (267)
T 1iy8_A 12 TDRVVLITGGGSGLGRATAVRLAAEGA----KLSLV-DVSSEGLEASKAA-------VLETAPDAEVLTTVADVSDEAQV 79 (267)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHHHCTTCCEEEEECCTTSHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-------HHhhcCCceEEEEEccCCCHHHH
Confidence 345666665 69999999999999999 99999 9998876655431 001001233444443 24456
Q ss_pred HHHHHHhccccCCCCEEEEecC
Q 024016 85 KDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~~ 106 (274)
+++++++...+.+=.++|+..+
T Consensus 80 ~~~~~~~~~~~g~id~lv~nAg 101 (267)
T 1iy8_A 80 EAYVTATTERFGRIDGFFNNAG 101 (267)
T ss_dssp HHHHHHHHHHHSCCSEEEECCC
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 7777766554433357777643
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.18 E-value=0.027 Score=45.68 Aligned_cols=86 Identities=12% Similarity=0.169 Sum_probs=53.7
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee-----Cc
Q 024016 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV-----KP 81 (274)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v-----~~ 81 (274)
++.+++-|.|+ |.+|.++++.|.+.|+ +|++. +|++++.+.+.+. + .+ .......++.. .+
T Consensus 12 l~~k~vlITGas~gIG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-~------~~-~~~~~~~~~~~d~d~~~~ 78 (247)
T 3i1j_A 12 LKGRVILVTGAARGIGAAAARAYAAHGA----SVVLL-GRTEASLAEVSDQ-I------KS-AGQPQPLIIALNLENATA 78 (247)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-H------HH-TTSCCCEEEECCTTTCCH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC----EEEEE-ecCHHHHHHHHHH-H------Hh-cCCCCceEEEeccccCCH
Confidence 44556766665 9999999999999999 99999 9999887765531 0 00 00011222222 23
Q ss_pred ccHHHHHHHhccccCCCCEEEEecC
Q 024016 82 QVVKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 82 ~~~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
+.+..+++++...+.+=.++|+..+
T Consensus 79 ~~~~~~~~~~~~~~g~id~lv~nAg 103 (247)
T 3i1j_A 79 QQYRELAARVEHEFGRLDGLLHNAS 103 (247)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCc
Confidence 4566777766554434357777644
|
| >3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0099 Score=44.00 Aligned_cols=78 Identities=12% Similarity=0.152 Sum_probs=49.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHHcCceecc--Cchhhcc--CCCEEEEeeCccc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESIGVKVLS--DNNAVVE--YSDVVVFSVKPQV 83 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~-g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~--~~~~~~~--~aDiIil~v~~~~ 83 (274)
+.+++.|||+|..|..++..|.+. || ++..+++.++++.... -.|+.+.. +..+.++ +.|.|++|+|...
T Consensus 3 ~~~~vlIiGaG~~g~~l~~~l~~~~g~----~vvg~~d~~~~~~g~~-i~g~pV~g~~~l~~~~~~~~id~viia~~~~~ 77 (141)
T 3nkl_A 3 AKKKVLIYGAGSAGLQLANMLRQGKEF----HPIAFIDDDRKKHKTT-MQGITIYRPKYLERLIKKHCISTVLLAVPSAS 77 (141)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHSSSE----EEEEEECSCGGGTTCE-ETTEEEECGGGHHHHHHHHTCCEEEECCTTSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCc----EEEEEEECCcccCCCE-ecCeEEECHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 456899999999999999999875 66 7776657765432110 03554433 2333332 5788888887433
Q ss_pred ---HHHHHHHh
Q 024016 84 ---VKDVAMQI 91 (274)
Q Consensus 84 ---~~~v~~~i 91 (274)
..+++..+
T Consensus 78 ~~~~~~i~~~l 88 (141)
T 3nkl_A 78 QVQKKVIIESL 88 (141)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444443
|
| >3h2z_A Mannitol-1-phosphate 5-dehydrogenase; PSI- protein structure initiative, structural genomics, midwest for structural genomics (MCSG); 1.90A {Shigella flexneri 2a str} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.016 Score=50.77 Aligned_cols=94 Identities=20% Similarity=0.237 Sum_probs=63.1
Q ss_pred CeEEEEcccHHHHHHHH-HHHhCCCCCCCcEEEEeCCCHHHHHHHHHcC------------------ceeccC-c---hh
Q 024016 11 FILGFIGAGKMAESIAK-GVAKSGVLPPDRICTAVHSNLKRRDAFESIG------------------VKVLSD-N---NA 67 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~-~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g------------------~~~~~~-~---~~ 67 (274)
||+..+|+|++|+.+.. -|.++|+ +|+.. +++....+.|.+.| ++..++ . .+
T Consensus 1 mkavhfGaGniGRGfig~~l~~~g~----~v~f~-dv~~~~i~~Ln~~~~Y~V~~~g~~~~~~~v~~v~ai~s~~~~~~~ 75 (382)
T 3h2z_A 1 MKALHFGAGNIGRGFIGKLLADAGI----QLTFA-DVNQVVLDALNARHSYQVHVVGETEQVDTVSGVNAVSSIGDDVVD 75 (382)
T ss_dssp CEEEEECCSHHHHHTHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHSEEEEEEESSSEEEEEEESCEEEETTSSHHHH
T ss_pred CcEEEECCCccchhhHHHHHHHcCC----eEEEE-eCCHHHHHHHhcCCCEEEEEccCCcceEEEEEEEEEeCcHHHHHH
Confidence 68999999999977655 4557888 99999 99998888887632 111111 1 23
Q ss_pred hccCCCEEEEeeCcccHHHHHHHhccc--------cCCCCEEEEecCCCC
Q 024016 68 VVEYSDVVVFSVKPQVVKDVAMQIRPL--------LSRKKLLVSVAAGVK 109 (274)
Q Consensus 68 ~~~~aDiIil~v~~~~~~~v~~~i~~~--------l~~~~~vis~~~g~~ 109 (274)
.+.++|+|.+++.|+..+.+...|... ..+.-.|++|-+-..
T Consensus 76 ~i~~adlitT~vG~~~l~~i~~~l~~~L~~R~~~~~~~pltilsCeN~~~ 125 (382)
T 3h2z_A 76 LIAQVDLVTTAVGPVVLERIAPAIAKGLVKRKEQGNESPLNIIACENMVR 125 (382)
T ss_dssp HHTTCSEEEECCCHHHHHHTHHHHHHHHHHHHHHTCCSCEEEEECCSSTT
T ss_pred HHcCCCEEEECCCcccHHHHHHHHHHHHHHHHHcCCCCCcEEEECCCccc
Confidence 566899999999887766555433221 123445778766544
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.015 Score=50.41 Aligned_cols=86 Identities=9% Similarity=0.025 Sum_probs=60.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-ccC----chh----hc--cCCCEEEEe
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-LSD----NNA----VV--EYSDVVVFS 78 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~-~~~----~~~----~~--~~aDiIil~ 78 (274)
..+|.|+|+|.+|...++.+...|. +|++. ++++++.+.+.+.|+.. .+. ..+ .. ...|+||-|
T Consensus 190 g~~VlV~G~G~vG~~a~qla~~~Ga----~Vi~~-~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~vid~ 264 (363)
T 3uog_A 190 GDRVVVQGTGGVALFGLQIAKATGA----EVIVT-SSSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGADHILEI 264 (363)
T ss_dssp TCEEEEESSBHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC----EEEEE-ecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceEEEEC
Confidence 4689999999999999998888998 99999 99999998888777642 211 111 11 157888888
Q ss_pred eCcccHHHHHHHhccccCCCCEEEEe
Q 024016 79 VKPQVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 79 v~~~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
+....+...++.+. ++..++.+
T Consensus 265 ~g~~~~~~~~~~l~----~~G~iv~~ 286 (363)
T 3uog_A 265 AGGAGLGQSLKAVA----PDGRISVI 286 (363)
T ss_dssp TTSSCHHHHHHHEE----EEEEEEEE
T ss_pred CChHHHHHHHHHhh----cCCEEEEE
Confidence 77665665555433 33445544
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.08 E-value=0.028 Score=46.30 Aligned_cols=87 Identities=15% Similarity=0.186 Sum_probs=54.5
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEee---Ccc
Q 024016 8 AESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSV---KPQ 82 (274)
Q Consensus 8 ~~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v---~~~ 82 (274)
++.+++-|.| .|.+|.++++.|.+.|+ +|++. +|++++.+.+.+ ..- ......+.++.. .++
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~~~l~~--------~~~~~~~~~~~~D~~~~~ 71 (267)
T 2gdz_A 5 VNGKVALVTGAAQGIGRAFAEALLLKGA----KVALV-DWNLEAGVQCKAALHE--------QFEPQKTLFIQCDVADQQ 71 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHHTT--------TSCGGGEEEEECCTTSHH
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHHHHh--------hcCCCceEEEecCCCCHH
Confidence 3445777776 59999999999999999 99999 999877655432 110 000112333333 345
Q ss_pred cHHHHHHHhccccCCCCEEEEecCC
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~~~g 107 (274)
.+..+++++...+.+=.++|+..+.
T Consensus 72 ~v~~~~~~~~~~~g~id~lv~~Ag~ 96 (267)
T 2gdz_A 72 QLRDTFRKVVDHFGRLDILVNNAGV 96 (267)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 5777777665544333577876543
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.02 E-value=0.047 Score=47.03 Aligned_cols=86 Identities=14% Similarity=0.168 Sum_probs=60.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-cc-----Cch-hh---c-----cCCCE
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-LS-----DNN-AV---V-----EYSDV 74 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~-~~-----~~~-~~---~-----~~aDi 74 (274)
..+|.|+|+|.+|...++.+...|. +|++. ++++++.+.+.+.|+.. .+ +.. ++ . ...|+
T Consensus 169 g~~VlV~GaG~vG~~a~qla~~~Ga----~Vi~~-~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~ 243 (352)
T 1e3j_A 169 GTTVLVIGAGPIGLVSVLAAKAYGA----FVVCT-ARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNV 243 (352)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC----EEEEE-cCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCE
Confidence 4689999999999999988888898 88888 99999988888877642 11 111 11 1 35899
Q ss_pred EEEeeCcc-cHHHHHHHhccccCCCCEEEEe
Q 024016 75 VVFSVKPQ-VVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 75 Iil~v~~~-~~~~v~~~i~~~l~~~~~vis~ 104 (274)
||-++... .+...+.- ++++..++.+
T Consensus 244 vid~~g~~~~~~~~~~~----l~~~G~iv~~ 270 (352)
T 1e3j_A 244 TIDCSGNEKCITIGINI----TRTGGTLMLV 270 (352)
T ss_dssp EEECSCCHHHHHHHHHH----SCTTCEEEEC
T ss_pred EEECCCCHHHHHHHHHH----HhcCCEEEEE
Confidence 99998654 34444433 4455566654
|
| >2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.022 Score=48.76 Aligned_cols=88 Identities=14% Similarity=0.147 Sum_probs=55.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC-CHHHHHHHHH----cC-------------------ceec--cC
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFES----IG-------------------VKVL--SD 64 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r-~~~~~~~l~~----~g-------------------~~~~--~~ 64 (274)
+||||+|.|++|+.+.+.|.++.+ +|..+++. +++....+.+ .| +.+. .+
T Consensus 1 ikVgInG~G~IGr~vlr~l~~~~~----evvaind~~~~~~~a~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~d 76 (331)
T 2g82_O 1 MKVGINGFGRIGRQVFRILHSRGV----EVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKD 76 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTC----CEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC----EEEEEecCCCHHHHhHhhhccccCCCCCceEEEcCCEEEECCEEEEEEecCC
Confidence 489999999999999999887755 77766343 4444444443 22 1121 13
Q ss_pred chhh-cc--CCCEEEEeeCcccHHHHHHHhccccCCCC--EEEEec
Q 024016 65 NNAV-VE--YSDVVVFSVKPQVVKDVAMQIRPLLSRKK--LLVSVA 105 (274)
Q Consensus 65 ~~~~-~~--~aDiIil~v~~~~~~~v~~~i~~~l~~~~--~vis~~ 105 (274)
+.+. .. ++|+||.|++...-.+...... ..|. +|||..
T Consensus 77 p~~l~w~~~gvDiV~estG~~~s~e~a~~~l---~aGakkvVIsap 119 (331)
T 2g82_O 77 PKEIPWAEAGVGVVIESTGVFTDADKAKAHL---EGGAKKVIITAP 119 (331)
T ss_dssp GGGSCTTTTTEEEEEECSSSCCBHHHHTHHH---HTTCSEEEESSC
T ss_pred hhhCcccccCCCEEEECCCchhhHHHHHHHH---HCCCCEEEECCC
Confidence 3332 22 6899999998777666655443 3344 777653
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.008 Score=51.98 Aligned_cols=67 Identities=15% Similarity=0.262 Sum_probs=48.7
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH--HHHHH-cCcee-ccC-------chhhccCCCEEE
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR--DAFES-IGVKV-LSD-------NNAVVEYSDVVV 76 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~--~~l~~-~g~~~-~~~-------~~~~~~~aDiIi 76 (274)
..|+|.|.|+ |.+|+++++.|++.|+ +|++. +|++++. +.+.+ .++.. ..| ..++++++|+||
T Consensus 4 ~~~~ilVtGatG~iG~~l~~~L~~~g~----~V~~~-~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi 78 (352)
T 1xgk_A 4 QKKTIAVVGATGRQGASLIRVAAAVGH----HVRAQ-VHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAF 78 (352)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTC----CEEEE-ESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCC----EEEEE-ECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEE
Confidence 3578999985 9999999999999999 99998 8887654 44443 24432 122 234567899999
Q ss_pred EeeC
Q 024016 77 FSVK 80 (274)
Q Consensus 77 l~v~ 80 (274)
.+..
T Consensus 79 ~~a~ 82 (352)
T 1xgk_A 79 INTT 82 (352)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 8764
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.011 Score=54.15 Aligned_cols=43 Identities=23% Similarity=0.370 Sum_probs=36.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~ 56 (274)
+.+++.|+|+|.+|.+++..|.+.|. +|+++ +|+.++++.+.+
T Consensus 363 ~~k~vlV~GaGGig~aia~~L~~~G~----~V~i~-~R~~~~a~~la~ 405 (523)
T 2o7s_A 363 ASKTVVVIGAGGAGKALAYGAKEKGA----KVVIA-NRTYERALELAE 405 (523)
T ss_dssp ---CEEEECCSHHHHHHHHHHHHHCC-----CEEE-ESSHHHHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHH
Confidence 45679999999999999999999998 89999 999999888765
|
| >2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.022 Score=51.64 Aligned_cols=65 Identities=22% Similarity=0.279 Sum_probs=49.4
Q ss_pred CCCeEEEEcccHHHHH-HHHHHHhCCCCCCCcEEEEeCCCHH-HHHHHHHcCceecc-CchhhccCCCEEEEe
Q 024016 9 ESFILGFIGAGKMAES-IAKGVAKSGVLPPDRICTAVHSNLK-RRDAFESIGVKVLS-DNNAVVEYSDVVVFS 78 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~-~a~~L~~~g~~~~~~v~v~~~r~~~-~~~~l~~~g~~~~~-~~~~~~~~aDiIil~ 78 (274)
+.++|.|||.|..|.+ +|+.|.+.|+ +|+++ |.... ..+.|.+.|+.+.. ...+.++++|+|++.
T Consensus 18 ~~~~v~viGiG~sG~s~~A~~l~~~G~----~V~~~-D~~~~~~~~~l~~~gi~~~~g~~~~~~~~a~~vv~s 85 (491)
T 2f00_A 18 RVRHIHFVGIGGAGMGGIAEVLANEGY----QISGS-DLAPNPVTQQLMNLGATIYFNHRPENVRDASVVVVS 85 (491)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHTTC----EEEEE-CSSCCHHHHHHHHTTCEEESSCCGGGGTTCSEEEEC
T ss_pred cCCEEEEEEcCHHHHHHHHHHHHhCCC----eEEEE-CCCCCHHHHHHHHCCCEEECCCCHHHcCCCCEEEEC
Confidence 3578999999999997 9999999999 99999 87543 34567667887641 112345789998886
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=95.98 E-value=0.053 Score=44.43 Aligned_cols=81 Identities=16% Similarity=0.212 Sum_probs=55.0
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEee---Ccc
Q 024016 8 AESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSV---KPQ 82 (274)
Q Consensus 8 ~~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v---~~~ 82 (274)
++.+++-|.| .|-+|.++++.|.+.|+ +|++. +|++++.+.+.+ .+ .++.++.. .++
T Consensus 6 l~~k~vlVTGas~gIG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~ 67 (259)
T 4e6p_A 6 LEGKSALITGSARGIGRAFAEAYVREGA----TVAIA-DIDIERARQAAAEIG-------------PAAYAVQMDVTRQD 67 (259)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHHC-------------TTEEEEECCTTCHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHHhC-------------CCceEEEeeCCCHH
Confidence 3456777776 58999999999999999 99999 999988776554 21 12233332 345
Q ss_pred cHHHHHHHhccccCCCCEEEEecC
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
.++++++++...+.+=.++|+..+
T Consensus 68 ~v~~~~~~~~~~~g~id~lv~~Ag 91 (259)
T 4e6p_A 68 SIDAAIAATVEHAGGLDILVNNAA 91 (259)
T ss_dssp HHHHHHHHHHHHSSSCCEEEECCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCC
Confidence 577777776655544457777643
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=95.97 E-value=0.01 Score=50.61 Aligned_cols=65 Identities=15% Similarity=0.183 Sum_probs=44.9
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH---H---HHHH-cCceec-------cCchhhccCCCE
Q 024016 10 SFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR---D---AFES-IGVKVL-------SDNNAVVEYSDV 74 (274)
Q Consensus 10 ~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~---~---~l~~-~g~~~~-------~~~~~~~~~aDi 74 (274)
.++|.|.| +|-+|+++++.|++.|+ +|.+. .|++++. . .+.. .++... .+..++++++|+
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~ 83 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKGY----AVNTT-VRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIAGCDF 83 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTTC----EEEEE-ESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHTTCSE
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC----EEEEE-EcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHcCCCE
Confidence 57899998 69999999999999999 99987 7765432 1 2221 233221 123456678999
Q ss_pred EEEee
Q 024016 75 VVFSV 79 (274)
Q Consensus 75 Iil~v 79 (274)
||-+.
T Consensus 84 Vih~A 88 (338)
T 2rh8_A 84 VFHVA 88 (338)
T ss_dssp EEEES
T ss_pred EEEeC
Confidence 99753
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.035 Score=45.45 Aligned_cols=81 Identities=14% Similarity=0.165 Sum_probs=53.5
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEee---Ccc
Q 024016 8 AESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSV---KPQ 82 (274)
Q Consensus 8 ~~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v---~~~ 82 (274)
++.++|-|.| .|.+|.++++.|.+.|+ +|++. +|++++.+.+.+ .+ .++.++.. .++
T Consensus 10 ~~~k~vlVTGasggiG~~~a~~l~~~G~----~V~~~-~r~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~ 71 (265)
T 2o23_A 10 VKGLVAVITGGASGLGLATAERLVGQGA----SAVLL-DLPNSGGEAQAKKLG-------------NNCVFAPADVTSEK 71 (265)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ECTTSSHHHHHHHHC-------------TTEEEEECCTTCHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC----EEEEE-eCCcHhHHHHHHHhC-------------CceEEEEcCCCCHH
Confidence 3456777775 59999999999999999 99999 898876665443 11 22333333 245
Q ss_pred cHHHHHHHhccccCCCCEEEEecC
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
.+.++++++...+.+=.++|+..+
T Consensus 72 ~v~~~~~~~~~~~g~id~li~~Ag 95 (265)
T 2o23_A 72 DVQTALALAKGKFGRVDVAVNCAG 95 (265)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHCCCCCEEEECCc
Confidence 567777766544433356777643
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.92 E-value=0.032 Score=45.05 Aligned_cols=81 Identities=14% Similarity=0.199 Sum_probs=53.6
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCC--CCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---Ccc
Q 024016 9 ESFILGFIG-AGKMAESIAKGVAKSG--VLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQ 82 (274)
Q Consensus 9 ~~~~IgiIG-~G~mG~~~a~~L~~~g--~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~ 82 (274)
+.++|.|.| .|.+|.++++.|++.| + +|++. +|++++.+.+.+. ...++.++.. .++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~g~~~----~V~~~-~r~~~~~~~l~~~------------~~~~~~~~~~D~~~~~ 64 (250)
T 1yo6_A 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIR----HIIAT-ARDVEKATELKSI------------KDSRVHVLPLTVTCDK 64 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCC----EEEEE-ESSGGGCHHHHTC------------CCTTEEEEECCTTCHH
T ss_pred CCCEEEEecCCchHHHHHHHHHHhcCCCc----EEEEE-ecCHHHHHHHHhc------------cCCceEEEEeecCCHH
Confidence 455777775 5999999999999999 8 99999 9998877665432 1223444433 234
Q ss_pred cHHHHHHHhccccC--CCCEEEEecC
Q 024016 83 VVKDVAMQIRPLLS--RKKLLVSVAA 106 (274)
Q Consensus 83 ~~~~v~~~i~~~l~--~~~~vis~~~ 106 (274)
.+.++++++...+. +=..+|++.+
T Consensus 65 ~~~~~~~~~~~~~g~~~id~li~~Ag 90 (250)
T 1yo6_A 65 SLDTFVSKVGEIVGSDGLSLLINNAG 90 (250)
T ss_dssp HHHHHHHHHHHHHGGGCCCEEEECCC
T ss_pred HHHHHHHHHHHhcCCCCCcEEEECCc
Confidence 56677766654432 2246777643
|
| >1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 | Back alignment and structure |
|---|
Probab=95.89 E-value=0.035 Score=44.69 Aligned_cols=80 Identities=21% Similarity=0.296 Sum_probs=52.8
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHHH
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~ 88 (274)
.||.+++|+ |+||+.+.+.....++ ++....++... ++ +.++|++|=.+.|+.+.+.+
T Consensus 12 ~~~~~v~Ga~GrMG~~i~~~~~~~~~----elv~~id~~~~-------------~~----l~~~DVvIDFT~P~a~~~~~ 70 (228)
T 1vm6_A 12 HMKYGIVGYSGRMGQEIQKVFSEKGH----ELVLKVDVNGV-------------EE----LDSPDVVIDFSSPEALPKTV 70 (228)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC----EEEEEEETTEE-------------EE----CSCCSEEEECSCGGGHHHHH
T ss_pred cceeEEEEecCHHHHHHHHHHhCCCC----EEEEEEcCCCc-------------cc----ccCCCEEEECCCHHHHHHHH
Confidence 479999998 9999999887666676 65543365431 11 24789999666677766666
Q ss_pred HHhccccCCCCEEEEecCCCCHHHH
Q 024016 89 MQIRPLLSRKKLLVSVAAGVKLKDL 113 (274)
Q Consensus 89 ~~i~~~l~~~~~vis~~~g~~~~~l 113 (274)
+.... .+..+|.-+.|.+.+.+
T Consensus 71 ~~~~~---~g~~~ViGTTG~~~~~~ 92 (228)
T 1vm6_A 71 DLCKK---YRAGLVLGTTALKEEHL 92 (228)
T ss_dssp HHHHH---HTCEEEECCCSCCHHHH
T ss_pred HHHHH---cCCCEEEeCCCCCHHHH
Confidence 54433 23455655667876654
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0067 Score=49.10 Aligned_cols=70 Identities=14% Similarity=0.171 Sum_probs=47.5
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-------ccCchhhccCCCEEEEee
Q 024016 8 AESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-------LSDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 8 ~~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~-------~~~~~~~~~~aDiIil~v 79 (274)
|+.|+|.|.| .|.+|.++++.|++.|+. .+|++. +|++++.+.+...++.. ..+..+++++.|+||-+.
T Consensus 16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~--~~V~~~-~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a 92 (242)
T 2bka_A 16 MQNKSVFILGASGETGRVLLKEILEQGLF--SKVTLI-GRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCL 92 (242)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCC--SEEEEE-ESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECC
T ss_pred hcCCeEEEECCCcHHHHHHHHHHHcCCCC--CEEEEE-EcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEEEECC
Confidence 3457899998 699999999999999862 268888 88876543322222221 122345566889999887
Q ss_pred C
Q 024016 80 K 80 (274)
Q Consensus 80 ~ 80 (274)
.
T Consensus 93 g 93 (242)
T 2bka_A 93 G 93 (242)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.016 Score=49.79 Aligned_cols=68 Identities=15% Similarity=0.169 Sum_probs=47.9
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH----HHHHHHH-------cCceec----cC---chhh
Q 024016 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLK----RRDAFES-------IGVKVL----SD---NNAV 68 (274)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~----~~~~l~~-------~g~~~~----~~---~~~~ 68 (274)
+++|+|.|.|+ |.+|+.+++.|++.|+ +|++. +|++. +.+.+.+ .++... .+ ..++
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 99 (352)
T 1sb8_A 25 AQPKVWLITGVAGFIGSNLLETLLKLDQ----KVVGL-DNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNA 99 (352)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHH
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHHCCC----EEEEE-eCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHH
Confidence 34679999987 9999999999999999 99999 88642 3333321 233321 12 2345
Q ss_pred ccCCCEEEEeeC
Q 024016 69 VEYSDVVVFSVK 80 (274)
Q Consensus 69 ~~~aDiIil~v~ 80 (274)
++++|+||-+..
T Consensus 100 ~~~~d~vih~A~ 111 (352)
T 1sb8_A 100 CAGVDYVLHQAA 111 (352)
T ss_dssp HTTCSEEEECCS
T ss_pred hcCCCEEEECCc
Confidence 678999998864
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.065 Score=47.12 Aligned_cols=92 Identities=10% Similarity=0.075 Sum_probs=61.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec-cC----ch----hhc--cCCCEEEE
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SD----NN----AVV--EYSDVVVF 77 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~-~~----~~----~~~--~~aDiIil 77 (274)
...+|.|+|+|.+|...++.+...|. .+|++. ++++++.+.+++.|+... +. .. +.. ...|+||-
T Consensus 213 ~g~~VlV~GaG~vG~~aiqlak~~Ga---~~Vi~~-~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid 288 (404)
T 3ip1_A 213 PGDNVVILGGGPIGLAAVAILKHAGA---SKVILS-EPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLE 288 (404)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-CSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC---CEEEEE-CCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEE
Confidence 34689999999999998888877886 268888 999999988888886422 11 11 111 25899999
Q ss_pred eeCcc--cHHHHHHHhccccCCCCEEEEe
Q 024016 78 SVKPQ--VVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 78 ~v~~~--~~~~v~~~i~~~l~~~~~vis~ 104 (274)
|+... .....+.-+...++++..++.+
T Consensus 289 ~~g~~~~~~~~~~~~l~~~~~~~G~iv~~ 317 (404)
T 3ip1_A 289 ATGVPQLVWPQIEEVIWRARGINATVAIV 317 (404)
T ss_dssp CSSCHHHHHHHHHHHHHHCSCCCCEEEEC
T ss_pred CCCCcHHHHHHHHHHHHhccCCCcEEEEe
Confidence 98654 3444443331223566666654
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.81 E-value=0.038 Score=44.68 Aligned_cols=81 Identities=12% Similarity=0.089 Sum_probs=54.2
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~ 84 (274)
.++++-|.|+ |-+|.++++.|.+.|+ +|++. +|++++.+++.+.- . ..+.++.. .++.+
T Consensus 2 s~k~vlVTGas~GIG~a~a~~l~~~G~----~V~~~-~r~~~~~~~~~~~~-----------~-~~~~~~~~D~~~~~~v 64 (235)
T 3l6e_A 2 SLGHIIVTGAGSGLGRALTIGLVERGH----QVSMM-GRRYQRLQQQELLL-----------G-NAVIGIVADLAHHEDV 64 (235)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHH-----------G-GGEEEEECCTTSHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHHh-----------c-CCceEEECCCCCHHHH
Confidence 3456777765 8999999999999999 99999 99998877655410 0 02333333 34557
Q ss_pred HHHHHHhccccCCCCEEEEecC
Q 024016 85 KDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~~ 106 (274)
+.+++++...+.+=.++|+..+
T Consensus 65 ~~~~~~~~~~~g~id~lvnnAg 86 (235)
T 3l6e_A 65 DVAFAAAVEWGGLPELVLHCAG 86 (235)
T ss_dssp HHHHHHHHHHHCSCSEEEEECC
T ss_pred HHHHHHHHHhcCCCcEEEECCC
Confidence 7777776654444457777644
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.011 Score=51.50 Aligned_cols=95 Identities=11% Similarity=0.135 Sum_probs=65.2
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------HHHHHHHH-----cC-ceeccCchhhccCCC
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------KRRDAFES-----IG-VKVLSDNNAVVEYSD 73 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-------~~~~~l~~-----~g-~~~~~~~~~~~~~aD 73 (274)
.....||.|+|+|.-|.++++-+...|. .+|+++ |++- ++.+.+++ .. .....+..|+++++|
T Consensus 185 ~l~d~kVVi~GAGaAG~~iA~ll~~~Ga---~~I~v~-D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~AD 260 (398)
T 2a9f_A 185 SLDEVSIVVNGGGSAGLSITRKLLAAGA---TKVTVV-DKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGAD 260 (398)
T ss_dssp CTTSCEEEEECCSHHHHHHHHHHHHHTC---CEEEEE-ETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTC
T ss_pred CCCccEEEEECCCHHHHHHHHHHHHcCC---CeEEEE-ECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCC
Confidence 3455799999999999999999999886 489999 8763 12222222 11 111346788999999
Q ss_pred EEEEeeCccc-HHHHHHHhccccCCCCEEEEecCCCC
Q 024016 74 VVVFSVKPQV-VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 74 iIil~v~~~~-~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
++|=+..|.. .+++++. +.++.+|+.++++.+
T Consensus 261 V~IG~Sapgl~T~EmVk~----Ma~~pIIfalsNPt~ 293 (398)
T 2a9f_A 261 IFIGVSAPGVLKAEWISK----MAARPVIFAMANPIP 293 (398)
T ss_dssp SEEECCSTTCCCHHHHHT----SCSSCEEEECCSSSC
T ss_pred EEEecCCCCCCCHHHHHh----hCCCCEEEECCCCCc
Confidence 8776544443 4666665 457889999988764
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0064 Score=55.47 Aligned_cols=62 Identities=11% Similarity=0.174 Sum_probs=46.5
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee
Q 024016 10 SFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 10 ~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v 79 (274)
+|||.|.| +|.+|+.+++.|++.|+ +|++. +|++.+.+.+ .....+...+.++++|+||-+.
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~----~V~~l-~R~~~~~~~v---~~d~~~~~~~~l~~~D~Vih~A 209 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGH----EVIQL-VRKEPKPGKR---FWDPLNPASDLLDGADVLVHLA 209 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESSSCCTTCE---ECCTTSCCTTTTTTCSEEEECC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-ECCCCCccce---eecccchhHHhcCCCCEEEECC
Confidence 67999998 69999999999999999 99999 8887653211 1111223355677899999875
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=95.79 E-value=0.012 Score=49.72 Aligned_cols=64 Identities=14% Similarity=0.188 Sum_probs=38.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhcc--CCCEEEEee
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE--YSDVVVFSV 79 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~aDiIil~v 79 (274)
.|+|.|.|+ |.+|+++++.|++.|+ +|++. +|++.... .....+.-..+..++++ ++|+||-+.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~----~V~~~-~r~~~~~~-~~~~Dl~d~~~~~~~~~~~~~d~vih~A 68 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNNW----HAVGC-GFRRARPK-FEQVNLLDSNAVHHIIHDFQPHVIVHCA 68 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTC----EEEEE-C-------------------CHHHHHHHCCSEEEECC
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCC----eEEEE-ccCCCCCC-eEEecCCCHHHHHHHHHhhCCCEEEECC
Confidence 368999987 9999999999999999 99999 88764411 11111111123334454 489999775
|
| >1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.023 Score=50.57 Aligned_cols=77 Identities=14% Similarity=0.173 Sum_probs=51.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------------------HHHHHH----HH--cCce--ec
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRDAF----ES--IGVK--VL 62 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-------------------~~~~~l----~~--~g~~--~~ 62 (274)
..||.|||+|.+|+.++++|...|. .+++++ |.+. .|++.+ .+ .++. ..
T Consensus 40 ~~~VlvvG~GGlGs~va~~La~aGv---g~i~iv-D~D~Ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~lnp~v~v~~~ 115 (434)
T 1tt5_B 40 TCKVLVIGAGGLGCELLKNLALSGF---RQIHVI-DMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPH 115 (434)
T ss_dssp TCCEEEECSSTHHHHHHHHHHHTTC---CCEEEE-ECCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCC---CEEEEE-cCCEechhccCCCcCCChhHcCcHHHHHHHHHHHhhCCCCEEEEE
Confidence 4689999999999999999999997 378777 5321 123322 22 2232 11
Q ss_pred -----cCchhhccCCCEEEEeeCcccHHHHHHH
Q 024016 63 -----SDNNAVVEYSDVVVFSVKPQVVKDVAMQ 90 (274)
Q Consensus 63 -----~~~~~~~~~aDiIil~v~~~~~~~v~~~ 90 (274)
....+.++++|+||.|+..-..+..+..
T Consensus 116 ~~~i~~~~~~~~~~~DlVi~~~Dn~~~R~~in~ 148 (434)
T 1tt5_B 116 FNKIQDFNDTFYRQFHIIVCGLDSIIARRWING 148 (434)
T ss_dssp ESCGGGBCHHHHTTCSEEEECCSCHHHHHHHHH
T ss_pred ecccchhhHHHhcCCCEEEECCCCHHHHHHHHH
Confidence 1224667889999999876655555544
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=95.75 E-value=0.029 Score=48.07 Aligned_cols=86 Identities=12% Similarity=0.159 Sum_probs=59.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec-c----Cchhhc----cCCCEEEEeeC
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-S----DNNAVV----EYSDVVVFSVK 80 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~-~----~~~~~~----~~aDiIil~v~ 80 (274)
..+|.|+|+|.+|...++.+...|. +|++. +|++++.+.+.+.|+... + +..+.+ ...|+||-++.
T Consensus 165 g~~VlV~GaG~vG~~~~~~a~~~Ga----~Vi~~-~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~g 239 (339)
T 1rjw_A 165 GEWVAIYGIGGLGHVAVQYAKAMGL----NVVAV-DIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAV 239 (339)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEECCC
Confidence 4689999999999999999888998 99999 999999988877776421 1 111111 35788888876
Q ss_pred c-ccHHHHHHHhccccCCCCEEEEe
Q 024016 81 P-QVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 81 ~-~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
. ..+...++-+ +++..++.+
T Consensus 240 ~~~~~~~~~~~l----~~~G~~v~~ 260 (339)
T 1rjw_A 240 SKPAFQSAYNSI----RRGGACVLV 260 (339)
T ss_dssp CHHHHHHHHHHE----EEEEEEEEC
T ss_pred CHHHHHHHHHHh----hcCCEEEEe
Confidence 4 4444444433 344455544
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.061 Score=44.27 Aligned_cols=88 Identities=14% Similarity=0.076 Sum_probs=56.4
Q ss_pred CCCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---Ccc
Q 024016 7 PAESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQ 82 (274)
Q Consensus 7 ~~~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~ 82 (274)
.++.+++-|.| .|-+|.++++.|.+.|+ +|++. +|++++.+.+.+. ..+......+.++.. .++
T Consensus 5 ~l~~k~~lVTGas~GIG~aia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-------l~~~~~~~~~~~~~~Dv~~~~ 72 (265)
T 3lf2_A 5 DLSEAVAVVTGGSSGIGLATVELLLEAGA----AVAFC-ARDGERLRAAESA-------LRQRFPGARLFASVCDVLDAL 72 (265)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHHHSTTCCEEEEECCTTCHH
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-------HHHhcCCceEEEEeCCCCCHH
Confidence 34455676675 58999999999999999 99999 9998877665431 000011122444443 345
Q ss_pred cHHHHHHHhccccCCCCEEEEecC
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
.+..+++++...+.+=.++|+..+
T Consensus 73 ~v~~~~~~~~~~~g~id~lvnnAg 96 (265)
T 3lf2_A 73 QVRAFAEACERTLGCASILVNNAG 96 (265)
T ss_dssp HHHHHHHHHHHHHCSCSEEEECCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCC
Confidence 577777776655444457787643
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0089 Score=52.05 Aligned_cols=93 Identities=12% Similarity=0.086 Sum_probs=55.2
Q ss_pred CeEEEEcc-cHHHHHHHH-HHHhCCCCCCCcEEEEeCCCHHH-HHHHHHcCceeccC-chhhccCCCEEEEeeCcccHHH
Q 024016 11 FILGFIGA-GKMAESIAK-GVAKSGVLPPDRICTAVHSNLKR-RDAFESIGVKVLSD-NNAVVEYSDVVVFSVKPQVVKD 86 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~-~L~~~g~~~~~~v~v~~~r~~~~-~~~l~~~g~~~~~~-~~~~~~~aDiIil~v~~~~~~~ 86 (274)
|||||||+ |..|.-|.+ -|.++.+ +..++.....|+.-+ ...+......+... ..+..+++|+||+|+|.....+
T Consensus 1 ~~VaIvGATG~vG~ellr~lL~~hp~-~~~~l~~~ss~~aG~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~s~~ 79 (370)
T 3pzr_A 1 MRVGLVGWRGMVGSVLMQRMVEERDF-DLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGSYTEK 79 (370)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGG-GGSEEEEEESSSTTSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCC-CceEEEEEeccccCcCHHHhCCCceEEEecCChhHhccCCEEEECCChHHHHH
Confidence 58999986 999999999 5554442 122554441443211 11121111222111 1233578999999999888777
Q ss_pred HHHHhccccCCC--CEEEEecCC
Q 024016 87 VAMQIRPLLSRK--KLLVSVAAG 107 (274)
Q Consensus 87 v~~~i~~~l~~~--~~vis~~~g 107 (274)
....+.. .| +.||+.++.
T Consensus 80 ~~~~~~~---~G~k~~VID~ss~ 99 (370)
T 3pzr_A 80 VYPALRQ---AGWKGYWIDAAST 99 (370)
T ss_dssp HHHHHHH---TTCCCEEEECSST
T ss_pred HHHHHHH---CCCCEEEEeCCch
Confidence 7766543 34 488988664
|
| >3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0095 Score=52.00 Aligned_cols=95 Identities=14% Similarity=0.143 Sum_probs=56.3
Q ss_pred CCCeEEEEcc-cHHHHHHHH-HHHhCCCCCCCcEEEEeCCCHH-HHHHHHHcCceecc-CchhhccCCCEEEEeeCcccH
Q 024016 9 ESFILGFIGA-GKMAESIAK-GVAKSGVLPPDRICTAVHSNLK-RRDAFESIGVKVLS-DNNAVVEYSDVVVFSVKPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~-~L~~~g~~~~~~v~v~~~r~~~-~~~~l~~~g~~~~~-~~~~~~~~aDiIil~v~~~~~ 84 (274)
..+||||||+ |..|.-|.+ -|.++.+ +..++..+..++.- +...+......+.. +..+..+++|+||+|+|....
T Consensus 3 ~~~~VaIvGATG~vG~ellr~lL~~hp~-~~~~l~~~ss~~aG~~~~~~~~~~~~v~~~~~~~~~~~vDvvf~a~~~~~s 81 (377)
T 3uw3_A 3 GSMNVGLVGWRGMVGSVLMQRMQEEGDF-DLIEPVFFSTSNAGGKAPSFAKNETTLKDATSIDDLKKCDVIITCQGGDYT 81 (377)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTGG-GGSEEEEEESSCTTSBCCTTCCSCCBCEETTCHHHHHTCSEEEECSCHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhhCCC-CceEEEEEechhcCCCHHHcCCCceEEEeCCChhHhcCCCEEEECCChHHH
Confidence 3579999986 999999999 5554442 12245444144321 11112211122211 112335789999999998888
Q ss_pred HHHHHHhccccCCC--CEEEEecCC
Q 024016 85 KDVAMQIRPLLSRK--KLLVSVAAG 107 (274)
Q Consensus 85 ~~v~~~i~~~l~~~--~~vis~~~g 107 (274)
.+....+.. .| +.||+.++.
T Consensus 82 ~~~~~~~~~---~G~k~~VID~ss~ 103 (377)
T 3uw3_A 82 NDVFPKLRA---AGWNGYWIDAASS 103 (377)
T ss_dssp HHHHHHHHH---TTCCSEEEECSST
T ss_pred HHHHHHHHH---CCCCEEEEeCCcc
Confidence 877776543 44 488988664
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=95.71 E-value=0.018 Score=45.14 Aligned_cols=46 Identities=17% Similarity=0.199 Sum_probs=38.5
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCc
Q 024016 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV 59 (274)
Q Consensus 9 ~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~ 59 (274)
..++|.|+| +|.+|..+++.+...|. +|++. +|++++.+.+.+.|.
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~----~V~~~-~~~~~~~~~~~~~g~ 84 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIGA----RIYTT-AGSDAKREMLSRLGV 84 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTC----EEEEE-ESSHHHHHHHHTTCC
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHHHcCC
Confidence 346899999 69999999999999998 99999 999888777665553
|
| >3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.05 Score=46.92 Aligned_cols=79 Identities=19% Similarity=0.262 Sum_probs=53.0
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhC-CCCCCCcEEEE-eCCCHHHHHHHHH-cCceec-----cCc--------------h
Q 024016 10 SFILGFIG-AGKMAESIAKGVAKS-GVLPPDRICTA-VHSNLKRRDAFES-IGVKVL-----SDN--------------N 66 (274)
Q Consensus 10 ~~~IgiIG-~G~mG~~~a~~L~~~-g~~~~~~v~v~-~~r~~~~~~~l~~-~g~~~~-----~~~--------------~ 66 (274)
.+||+|+| +|.+|..-..-+.++ .+ +|... +++|.+.+.+..+ ++...+ .+. .
T Consensus 3 ~k~i~ILGsTGSIG~~tldVi~~~~~~----~vvaL~a~~n~~~l~~q~~~f~p~~v~v~~~~~~~~~l~~~~~G~~~l~ 78 (376)
T 3a06_A 3 ERTLVILGATGSIGTQTLDVLKKVKGI----RLIGISFHSNLELAFKIVKEFNVKNVAITGDVEFEDSSINVWKGSHSIE 78 (376)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHSCSE----EEEEEEESSCHHHHHHHHHHHTCCEEEECSSCCCCCSSSEEEESTTHHH
T ss_pred cceEEEECCCCHHHHHHHHHHHhCCCe----EEEEEEccCCHHHHHHHHHHcCCCEEEEccHHHHHHHHHHHccCHHHHH
Confidence 46899999 699999988777765 34 66543 4899888766654 454322 121 2
Q ss_pred hhc--cCCCEEEEeeCcc-cHHHHHHHhc
Q 024016 67 AVV--EYSDVVVFSVKPQ-VVKDVAMQIR 92 (274)
Q Consensus 67 ~~~--~~aDiIil~v~~~-~~~~v~~~i~ 92 (274)
+++ .++|+|+.+++.. .+...+..+.
T Consensus 79 el~~~~~~D~Vv~AivG~aGL~ptlaAi~ 107 (376)
T 3a06_A 79 EMLEALKPDITMVAVSGFSGLRAVLASLE 107 (376)
T ss_dssp HHHHHHCCSEEEECCCSTTHHHHHHHHHH
T ss_pred HHhcCCCCCEEEEEeeCHHHHHHHHHHHH
Confidence 333 3699999999754 4666666553
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.056 Score=44.54 Aligned_cols=83 Identities=18% Similarity=0.207 Sum_probs=54.5
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccHHH
Q 024016 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVKD 86 (274)
Q Consensus 11 ~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~~~ 86 (274)
+++-|.| .|-+|.++++.|.+.|+ +|++. +|++++.+.+.+. ..+ ....++.++.. .++.++.
T Consensus 21 k~vlVTGas~gIG~aia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-------l~~-~~~~~~~~~~~Dv~~~~~v~~ 87 (266)
T 4egf_A 21 KRALITGATKGIGADIARAFAAAGA----RLVLS-GRDVSELDAARRA-------LGE-QFGTDVHTVAIDLAEPDAPAE 87 (266)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHH-HHCCCEEEEECCTTSTTHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-------HHH-hcCCcEEEEEecCCCHHHHHH
Confidence 4555555 58999999999999999 99999 9998877665431 000 01233444443 3556777
Q ss_pred HHHHhccccCCCCEEEEecC
Q 024016 87 VAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~~ 106 (274)
+++++...+.+=.++|+..+
T Consensus 88 ~~~~~~~~~g~id~lv~nAg 107 (266)
T 4egf_A 88 LARRAAEAFGGLDVLVNNAG 107 (266)
T ss_dssp HHHHHHHHHTSCSEEEEECC
T ss_pred HHHHHHHHcCCCCEEEECCC
Confidence 77777655544457787644
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0036 Score=53.44 Aligned_cols=71 Identities=14% Similarity=0.174 Sum_probs=48.5
Q ss_pred CCCCCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--cCceec----cC---chhhcc--C
Q 024016 4 FPIPAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--IGVKVL----SD---NNAVVE--Y 71 (274)
Q Consensus 4 ~~~~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~--~g~~~~----~~---~~~~~~--~ 71 (274)
-|..++.|+|.|.|+ |.+|+++++.|++.|+ +|++. +|++.....+.+ .++... .+ ..++++ +
T Consensus 14 ~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~----~V~~~-~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~ 88 (330)
T 2pzm_A 14 LVPRGSHMRILITGGAGCLGSNLIEHWLPQGH----EILVI-DNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFK 88 (330)
T ss_dssp CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTC----EEEEE-ECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHC
T ss_pred CcccCCCCEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-ECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcC
Confidence 355667789999987 9999999999999999 99999 886533211111 122211 12 234555 8
Q ss_pred CCEEEEee
Q 024016 72 SDVVVFSV 79 (274)
Q Consensus 72 aDiIil~v 79 (274)
+|+||-+.
T Consensus 89 ~D~vih~A 96 (330)
T 2pzm_A 89 PTHVVHSA 96 (330)
T ss_dssp CSEEEECC
T ss_pred CCEEEECC
Confidence 89999876
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.69 E-value=0.066 Score=44.24 Aligned_cols=87 Identities=16% Similarity=0.155 Sum_probs=54.5
Q ss_pred CCCCCCCCCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee
Q 024016 1 MDAFPIPAESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 1 ~~~~~~~~~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v 79 (274)
|.+++. ++.+++-|.| .|.+|.++++.|.+.|+ +|++. +|++++.+.+.+.- . .+.++..
T Consensus 1 M~~~~~-l~~k~vlVTGas~gIG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~~~~-----------~--~~~~~~~ 61 (270)
T 1yde_A 1 MATGTR-YAGKVVVVTGGGRGIGAGIVRAFVNSGA----RVVIC-DKDESGGRALEQEL-----------P--GAVFILC 61 (270)
T ss_dssp ---CCT-TTTCEEEEETCSSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHC-----------T--TEEEEEC
T ss_pred CCCCCC-CCCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHHh-----------c--CCeEEEc
Confidence 544433 3556777775 58999999999999999 99999 99988776654310 0 1222222
Q ss_pred ---CcccHHHHHHHhccccCCCCEEEEecC
Q 024016 80 ---KPQVVKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 80 ---~~~~~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
.++.++.+++++...+.+=.++|+..+
T Consensus 62 Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg 91 (270)
T 1yde_A 62 DVTQEDDVKTLVSETIRRFGRLDCVVNNAG 91 (270)
T ss_dssp CTTSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 244566777666544433356776643
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.067 Score=43.71 Aligned_cols=82 Identities=13% Similarity=0.033 Sum_probs=54.4
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---Cccc
Q 024016 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQV 83 (274)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~ 83 (274)
++.+++-|.|. |.+|.++++.|.+.|+ +|++. +|++++.+.+.+. + ..++.++.. .++.
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-~-----------~~~~~~~~~D~~~~~~ 65 (254)
T 1hdc_A 3 LSGKTVIITGGARGLGAEAARQAVAAGA----RVVLA-DVLDEEGAATARE-L-----------GDAARYQHLDVTIEED 65 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHT-T-----------GGGEEEEECCTTCHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-h-----------CCceeEEEecCCCHHH
Confidence 44567878865 9999999999999999 99999 9998877665431 0 112233322 3455
Q ss_pred HHHHHHHhccccCCCCEEEEecC
Q 024016 84 VKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
++.+++++...+.+=.++|+..+
T Consensus 66 ~~~~~~~~~~~~g~iD~lv~nAg 88 (254)
T 1hdc_A 66 WQRVVAYAREEFGSVDGLVNNAG 88 (254)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 77777766554433356776643
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.67 E-value=0.066 Score=43.69 Aligned_cols=81 Identities=14% Similarity=0.135 Sum_probs=53.8
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEee---Ccc
Q 024016 8 AESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSV---KPQ 82 (274)
Q Consensus 8 ~~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v---~~~ 82 (274)
++.+++-|.| .|.+|.++++.|.+.|+ +|++. +|++++.+.+.+ .+ .++.++.. .++
T Consensus 4 l~~k~vlVTGas~giG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~ 65 (253)
T 1hxh_A 4 LQGKVALVTGGASGVGLEVVKLLLGEGA----KVAFS-DINEAAGQQLAAELG-------------ERSMFVRHDVSSEA 65 (253)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHHHC-------------TTEEEECCCTTCHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHHcC-------------CceEEEEccCCCHH
Confidence 4556676665 58999999999999999 99999 999887766543 21 12333322 345
Q ss_pred cHHHHHHHhccccCCCCEEEEecC
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
.++.+++++...+.+=.++|+..+
T Consensus 66 ~v~~~~~~~~~~~g~id~lv~~Ag 89 (253)
T 1hxh_A 66 DWTLVMAAVQRRLGTLNVLVNNAG 89 (253)
T ss_dssp HHHHHHHHHHHHHCSCCEEEECCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCC
Confidence 567777766544433356777643
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.023 Score=49.29 Aligned_cols=86 Identities=13% Similarity=0.125 Sum_probs=58.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH---HHHHHHHHcCceecc--Cchhhc----cCCCEEEEeeC
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL---KRRDAFESIGVKVLS--DNNAVV----EYSDVVVFSVK 80 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~---~~~~~l~~~g~~~~~--~~~~~~----~~aDiIil~v~ 80 (274)
..+|.|+|+|.+|...++.+...|. +|++. ++++ ++.+.+.+.|+...+ +..+.+ ...|+||-++.
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~Ga----~Vi~~-~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~~~~~~d~vid~~g 255 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYGL----EVWMA-NRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATG 255 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHTC----EEEEE-ESSCCCHHHHHHHHHHTCEEEECTTCSHHHHHHHCCEEEEEECCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-eCCccchHHHHHHHHhCCceechHHHHHHHHHhCCCCCEEEECCC
Confidence 5689999999999999999988998 99999 9988 888777777875432 111111 34788888886
Q ss_pred cc-cH-HHHHHHhccccCCCCEEEEe
Q 024016 81 PQ-VV-KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 81 ~~-~~-~~v~~~i~~~l~~~~~vis~ 104 (274)
.. .+ ...+.. ++++..++.+
T Consensus 256 ~~~~~~~~~~~~----l~~~G~iv~~ 277 (366)
T 2cdc_A 256 ADVNILGNVIPL----LGRNGVLGLF 277 (366)
T ss_dssp CCTHHHHHHGGG----EEEEEEEEEC
T ss_pred ChHHHHHHHHHH----HhcCCEEEEE
Confidence 43 33 444333 3344455544
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0096 Score=51.92 Aligned_cols=33 Identities=30% Similarity=0.546 Sum_probs=30.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
|||.|||+|.-|..+|..|.+.|+ +|+++ +|++
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G~----~v~v~-Er~~ 34 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHGI----KVTIY-ERNS 34 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC----CEEEE-ecCC
Confidence 799999999999999999999999 99999 8754
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.08 Score=43.25 Aligned_cols=80 Identities=20% Similarity=0.274 Sum_probs=54.6
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEee---Cccc
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSV---KPQV 83 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v---~~~~ 83 (274)
+.+++-|.|. |.+|.++++.|.+.|+ +|++. +|++++.+++.+ .+ .++.++.+ .++.
T Consensus 8 ~~k~vlITGas~gIG~~~a~~l~~~G~----~V~~~-~r~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~~ 69 (261)
T 3n74_A 8 EGKVALITGAGSGFGEGMAKRFAKGGA----KVVIV-DRDKAGAERVAGEIG-------------DAALAVAADISKEAD 69 (261)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHHC-------------TTEEEEECCTTSHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHHHhC-------------CceEEEEecCCCHHH
Confidence 3456777765 7899999999999999 99999 999988877654 21 12333333 3455
Q ss_pred HHHHHHHhccccCCCCEEEEecC
Q 024016 84 VKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
++++++++...+.+=.++|+..+
T Consensus 70 ~~~~~~~~~~~~g~id~li~~Ag 92 (261)
T 3n74_A 70 VDAAVEAALSKFGKVDILVNNAG 92 (261)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHhcCCCCEEEECCc
Confidence 77777766554433357777643
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.087 Score=43.17 Aligned_cols=86 Identities=21% Similarity=0.235 Sum_probs=54.5
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---Cccc
Q 024016 8 AESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQV 83 (274)
Q Consensus 8 ~~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~ 83 (274)
++.+++-|.| .|.+|.++++.|.+.|+ +|++. +|++++.+.+.+. ..+. ...++.++.. .++.
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-------l~~~-~~~~~~~~~~D~~~~~~ 71 (263)
T 3ai3_A 5 ISGKVAVITGSSSGIGLAIAEGFAKEGA----HIVLV-ARQVDRLHEAARS-------LKEK-FGVRVLEVAVDVATPEG 71 (263)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHHH-HCCCEEEEECCTTSHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHHH-------HHHh-cCCceEEEEcCCCCHHH
Confidence 4456777776 59999999999999999 99999 9998876655431 0000 0123344433 2445
Q ss_pred HHHHHHHhccccCCCCEEEEecC
Q 024016 84 VKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
+.++++++...+.+=.++|+..+
T Consensus 72 ~~~~~~~~~~~~g~id~lv~~Ag 94 (263)
T 3ai3_A 72 VDAVVESVRSSFGGADILVNNAG 94 (263)
T ss_dssp HHHHHHHHHHHHSSCSEEEECCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 66777666554433357777643
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.035 Score=45.40 Aligned_cols=86 Identities=15% Similarity=0.152 Sum_probs=54.2
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccC-CCEEEEee---Ccc
Q 024016 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEY-SDVVVFSV---KPQ 82 (274)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~-aDiIil~v---~~~ 82 (274)
++.+++-|.|. |.+|.++++.|.+.|+ +|++. +|++++.+.+.+. ..+.... ..+.++.. .++
T Consensus 5 ~~~k~~lVTGas~GIG~aia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-------~~~~~~~~~~~~~~~~Dv~~~~ 72 (250)
T 3nyw_A 5 KQKGLAIITGASQGIGAVIAAGLATDGY----RVVLI-ARSKQNLEKVHDE-------IMRSNKHVQEPIVLPLDITDCT 72 (250)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHHTC----EEEEE-ESCHHHHHHHHHH-------HHHHCTTSCCCEEEECCTTCHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-------HHHhccccCcceEEeccCCCHH
Confidence 34556666654 8999999999999999 99999 9999887765531 0000001 23344443 345
Q ss_pred cHHHHHHHhccccCCCCEEEEec
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~~ 105 (274)
.+..+++++...+.+=.++|+..
T Consensus 73 ~v~~~~~~~~~~~g~iD~lvnnA 95 (250)
T 3nyw_A 73 KADTEIKDIHQKYGAVDILVNAA 95 (250)
T ss_dssp HHHHHHHHHHHHHCCEEEEEECC
T ss_pred HHHHHHHHHHHhcCCCCEEEECC
Confidence 56777776655443334677654
|
| >3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.066 Score=45.85 Aligned_cols=44 Identities=11% Similarity=0.264 Sum_probs=34.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC--CHHHHHHHHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS--NLKRRDAFES 56 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r--~~~~~~~l~~ 56 (274)
++.||||.|.|++|+..++.+...|. +|...+|+ +.+....+.+
T Consensus 6 ~~~kvgInGFGRIGrlv~R~~~~~~v----eivainDp~~d~~~~a~l~~ 51 (346)
T 3h9e_O 6 RELTVGINGFGRIGRLVLRACMEKGV----KVVAVNDPFIDPEYMVYMFK 51 (346)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC----EEEEEECTTCCHHHHHHHHH
T ss_pred CeeEEEEECCChHHHHHHHHHHhCCC----EEEEEeCCCCChhHhccccc
Confidence 34699999999999999999988886 87775474 5666666654
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.08 Score=42.75 Aligned_cols=86 Identities=14% Similarity=0.135 Sum_probs=54.1
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---Cccc
Q 024016 8 AESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQV 83 (274)
Q Consensus 8 ~~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~ 83 (274)
++.++|-|.| .|.+|.++++.|.+.|+ +|++. +|++++.+.+.+. + .+. ...++.++.. .++.
T Consensus 5 ~~~~~vlVtGasggiG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~~~-~------~~~-~~~~~~~~~~D~~~~~~ 71 (248)
T 2pnf_A 5 LQGKVSLVTGSTRGIGRAIAEKLASAGS----TVIIT-GTSGERAKAVAEE-I------ANK-YGVKAHGVEMNLLSEES 71 (248)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHHH-H------HHH-HCCCEEEEECCTTCHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC----EEEEE-eCChHHHHHHHHH-H------Hhh-cCCceEEEEccCCCHHH
Confidence 4456677775 59999999999999999 99999 9998876655431 0 000 0123333332 3455
Q ss_pred HHHHHHHhccccCCCCEEEEecC
Q 024016 84 VKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
++.+++++...+.+=..||+..+
T Consensus 72 ~~~~~~~~~~~~~~~d~vi~~Ag 94 (248)
T 2pnf_A 72 INKAFEEIYNLVDGIDILVNNAG 94 (248)
T ss_dssp HHHHHHHHHHHSSCCSEEEECCC
T ss_pred HHHHHHHHHHhcCCCCEEEECCC
Confidence 66777766554433356777643
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.068 Score=43.88 Aligned_cols=86 Identities=13% Similarity=0.221 Sum_probs=54.0
Q ss_pred CCCCeEEEEcc-cH--HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---Cc
Q 024016 8 AESFILGFIGA-GK--MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KP 81 (274)
Q Consensus 8 ~~~~~IgiIG~-G~--mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~ 81 (274)
++.+++-|.|+ |. +|.++++.|.+.|+ +|++. +|+.+..+.+.+.- +.....++.++.. .+
T Consensus 5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~~~~--------~~~~~~~~~~~~~D~~~~ 71 (266)
T 3oig_A 5 LEGRNIVVMGVANKRSIAWGIARSLHEAGA----RLIFT-YAGERLEKSVHELA--------GTLDRNDSIILPCDVTND 71 (266)
T ss_dssp CTTCEEEEECCCSTTSHHHHHHHHHHHTTC----EEEEE-ESSGGGHHHHHHHH--------HTSSSCCCEEEECCCSSS
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHHHCCC----EEEEe-cCchHHHHHHHHHH--------HhcCCCCceEEeCCCCCH
Confidence 45567888886 56 99999999999999 99998 88865444433210 0011113333333 35
Q ss_pred ccHHHHHHHhccccCCCCEEEEecC
Q 024016 82 QVVKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 82 ~~~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
+.++++++++...+.+=..+|+..+
T Consensus 72 ~~v~~~~~~~~~~~g~id~li~~Ag 96 (266)
T 3oig_A 72 AEIETCFASIKEQVGVIHGIAHCIA 96 (266)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHHhCCeeEEEEccc
Confidence 6678888777654433346776643
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.054 Score=44.41 Aligned_cols=77 Identities=19% Similarity=0.235 Sum_probs=53.7
Q ss_pred CeEEEE-cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccHHH
Q 024016 11 FILGFI-GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVKD 86 (274)
Q Consensus 11 ~~IgiI-G~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~~~ 86 (274)
++|-|- |.+-+|.++++.|.+.|+ +|.+. +|++++.+++.+.+. ++..+.. .+++++.
T Consensus 3 K~vlVTGas~GIG~aia~~la~~Ga----~V~~~-~~~~~~~~~~~~~~~-------------~~~~~~~Dv~~~~~v~~ 64 (247)
T 3ged_A 3 RGVIVTGGGHGIGKQICLDFLEAGD----KVCFI-DIDEKRSADFAKERP-------------NLFYFHGDVADPLTLKK 64 (247)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHTTCT-------------TEEEEECCTTSHHHHHH
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHhcC-------------CEEEEEecCCCHHHHHH
Confidence 345455 568899999999999999 99999 999988777665321 2233322 4566788
Q ss_pred HHHHhccccCCCCEEEEec
Q 024016 87 VAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~ 105 (274)
+++++...+.+=.++|+..
T Consensus 65 ~v~~~~~~~g~iDiLVNNA 83 (247)
T 3ged_A 65 FVEYAMEKLQRIDVLVNNA 83 (247)
T ss_dssp HHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHcCCCCEEEECC
Confidence 8877766554445777654
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.011 Score=50.70 Aligned_cols=60 Identities=10% Similarity=0.091 Sum_probs=43.5
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-------ccCchhhccCCCEEEEee
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-------LSDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~-------~~~~~~~~~~aDiIil~v 79 (274)
+.|+|.|.|+ |.+|+.+++.|++.|+ +|++. +|++++ .++.. ..+..++++++|+||-+.
T Consensus 18 ~~~~vlVtGatG~iG~~l~~~L~~~G~----~V~~~-~r~~~~------~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A 85 (347)
T 4id9_A 18 GSHMILVTGSAGRVGRAVVAALRTQGR----TVRGF-DLRPSG------TGGEEVVGSLEDGQALSDAIMGVSAVLHLG 85 (347)
T ss_dssp ---CEEEETTTSHHHHHHHHHHHHTTC----CEEEE-ESSCCS------SCCSEEESCTTCHHHHHHHHTTCSEEEECC
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCC----EEEEE-eCCCCC------CCccEEecCcCCHHHHHHHHhCCCEEEECC
Confidence 4578999987 9999999999999999 99999 888654 22221 112345567899999775
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.09 Score=42.64 Aligned_cols=79 Identities=16% Similarity=0.253 Sum_probs=51.2
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCE-EEEee---Ccc
Q 024016 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDV-VVFSV---KPQ 82 (274)
Q Consensus 9 ~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDi-Iil~v---~~~ 82 (274)
+.+++-|.| .|.+|.++++.|.+.|+ +|++. +|++++.+.+.+ .+ .++ .++.. .++
T Consensus 10 ~~k~vlITGasggiG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~ 71 (254)
T 2wsb_A 10 DGACAAVTGAGSGIGLEICRAFAASGA----RLILI-DREAAALDRAAQELG-------------AAVAARIVADVTDAE 71 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHHG-------------GGEEEEEECCTTCHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHHhc-------------ccceeEEEEecCCHH
Confidence 445677775 59999999999999999 99999 999887765543 11 122 22222 244
Q ss_pred cHHHHHHHhccccCCCCEEEEecC
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
.++++++++.. +.+=..+|+..+
T Consensus 72 ~~~~~~~~~~~-~~~id~li~~Ag 94 (254)
T 2wsb_A 72 AMTAAAAEAEA-VAPVSILVNSAG 94 (254)
T ss_dssp HHHHHHHHHHH-HSCCCEEEECCC
T ss_pred HHHHHHHHHHh-hCCCcEEEECCc
Confidence 56666666554 333356776643
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.097 Score=42.55 Aligned_cols=81 Identities=22% Similarity=0.273 Sum_probs=55.3
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEee---Ccc
Q 024016 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSV---KPQ 82 (274)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v---~~~ 82 (274)
++.+++-|.|. |-+|.++++.|.+.|+ +|++. +|++++.+.+.+ .+ .++.++.. .++
T Consensus 4 l~gk~vlVTGas~gIG~a~a~~l~~~G~----~V~~~-~r~~~~~~~~~~~~~-------------~~~~~~~~Dv~~~~ 65 (247)
T 3rwb_A 4 LAGKTALVTGAAQGIGKAIAARLAADGA----TVIVS-DINAEGAKAAAASIG-------------KKARAIAADISDPG 65 (247)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHHHC-------------TTEEECCCCTTCHH
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHHhC-------------CceEEEEcCCCCHH
Confidence 34567777765 8999999999999999 99999 999988776654 22 12222222 345
Q ss_pred cHHHHHHHhccccCCCCEEEEecC
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
.++.+++++...+.+=.++|+..+
T Consensus 66 ~v~~~~~~~~~~~g~id~lv~nAg 89 (247)
T 3rwb_A 66 SVKALFAEIQALTGGIDILVNNAS 89 (247)
T ss_dssp HHHHHHHHHHHHHSCCSEEEECCC
T ss_pred HHHHHHHHHHHHCCCCCEEEECCC
Confidence 677777776655444457777643
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.026 Score=48.46 Aligned_cols=87 Identities=13% Similarity=0.141 Sum_probs=60.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhC--CCCCCCcEEEEeCCCHHHHHHHHHcCceeccCch-------hhc--cCCCEEEE
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKS--GVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNN-------AVV--EYSDVVVF 77 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~--g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~-------~~~--~~aDiIil 77 (274)
...+|.|+|+|.+|...++.+... |. +|++. ++++++.+.+.+.|+...-+.. ++. ...|+||-
T Consensus 170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga----~Vi~~-~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~g~g~D~vid 244 (344)
T 2h6e_A 170 AEPVVIVNGIGGLAVYTIQILKALMKNI----TIVGI-SRSKKHRDFALELGADYVSEMKDAESLINKLTDGLGASIAID 244 (344)
T ss_dssp SSCEEEEECCSHHHHHHHHHHHHHCTTC----EEEEE-CSCHHHHHHHHHHTCSEEECHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCC----EEEEE-eCCHHHHHHHHHhCCCEEeccccchHHHHHhhcCCCccEEEE
Confidence 346899999999999988888777 87 89999 9999999888888864221211 111 15799999
Q ss_pred eeCcc-cHHHHHHHhccccCCCCEEEEe
Q 024016 78 SVKPQ-VVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 78 ~v~~~-~~~~v~~~i~~~l~~~~~vis~ 104 (274)
|+... .+...++-+ +++..++.+
T Consensus 245 ~~g~~~~~~~~~~~l----~~~G~iv~~ 268 (344)
T 2h6e_A 245 LVGTEETTYNLGKLL----AQEGAIILV 268 (344)
T ss_dssp SSCCHHHHHHHHHHE----EEEEEEEEC
T ss_pred CCCChHHHHHHHHHh----hcCCEEEEe
Confidence 98654 455554433 344455544
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.071 Score=42.75 Aligned_cols=40 Identities=10% Similarity=0.145 Sum_probs=34.0
Q ss_pred eEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH
Q 024016 12 ILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (274)
Q Consensus 12 ~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~ 56 (274)
+|-|.| .|.+|.++++.|.+.|+ +|++. +|++++.+.+.+
T Consensus 3 ~vlVTGas~gIG~~~a~~l~~~G~----~V~~~-~r~~~~~~~~~~ 43 (230)
T 3guy_A 3 LIVITGASSGLGAELAKLYDAEGK----ATYLT-GRSESKLSTVTN 43 (230)
T ss_dssp CEEEESTTSHHHHHHHHHHHHTTC----CEEEE-ESCHHHHHHHHH
T ss_pred EEEEecCCchHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHH
Confidence 566665 58999999999999999 99999 999988877654
|
| >1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.053 Score=49.54 Aligned_cols=78 Identities=17% Similarity=0.183 Sum_probs=51.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH-------------------HHH----HHHHc--Ccee--c
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-------------------RRD----AFESI--GVKV--L 62 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~-------------------~~~----~l~~~--g~~~--~ 62 (274)
..+|.|||+|.+|+.++++|...|. .+++++ |.+.- |++ .+.+. .+.+ .
T Consensus 32 ~~~VlvvG~GGlGseiak~La~aGV---g~itlv-D~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~lNp~v~v~~~ 107 (531)
T 1tt5_A 32 SAHVCLINATATGTEILKNLVLPGI---GSFTII-DGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFV 107 (531)
T ss_dssp HCEEEEECCSHHHHHHHHHHHTTTC---SEEEEE-CCCBBCHHHHHHCTTCCGGGBTSBHHHHHHHHHHTTCTTSBCCEE
T ss_pred cCeEEEECcCHHHHHHHHHHHHcCC---CeEEEE-eCCEechhhcccCccCChhhcCcHHHHHHHHHHHHhCCCCeEEEe
Confidence 3689999999999999999999997 378888 75431 122 22221 2321 1
Q ss_pred c--------CchhhccCCCEEEEeeCcccHHHHHHHh
Q 024016 63 S--------DNNAVVEYSDVVVFSVKPQVVKDVAMQI 91 (274)
Q Consensus 63 ~--------~~~~~~~~aDiIil~v~~~~~~~v~~~i 91 (274)
. +..+.+.++|+||.|+.....+..+.+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~ln~~ 144 (531)
T 1tt5_A 108 EESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADV 144 (531)
T ss_dssp SSCHHHHHHSCGGGGGGCSEEEEESCCHHHHHHHHHH
T ss_pred CCCcchhhhhhHHHhcCCCEEEEeCCCHHHHHHHHHH
Confidence 1 2335677899999998665555555443
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.025 Score=47.11 Aligned_cols=82 Identities=17% Similarity=0.088 Sum_probs=53.4
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccHHH
Q 024016 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVKD 86 (274)
Q Consensus 11 ~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~~~ 86 (274)
+++-|.| .|-+|.++++.|.+.|+ +|++. +|++++.+.+.+. ..+ ...++.++.. .++.+++
T Consensus 25 k~~lVTGas~GIG~aia~~la~~G~----~V~~~-~r~~~~~~~~~~~-------l~~--~~~~~~~~~~Dv~d~~~v~~ 90 (279)
T 3sju_A 25 QTAFVTGVSSGIGLAVARTLAARGI----AVYGC-ARDAKNVSAAVDG-------LRA--AGHDVDGSSCDVTSTDEVHA 90 (279)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHT--TTCCEEEEECCTTCHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-------HHh--cCCcEEEEECCCCCHHHHHH
Confidence 4455555 58999999999999999 99999 9998877665431 000 1234444444 3445777
Q ss_pred HHHHhccccCCCCEEEEecC
Q 024016 87 VAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~~ 106 (274)
+++++...+.+=.++|+..+
T Consensus 91 ~~~~~~~~~g~id~lv~nAg 110 (279)
T 3sju_A 91 AVAAAVERFGPIGILVNSAG 110 (279)
T ss_dssp HHHHHHHHHCSCCEEEECCC
T ss_pred HHHHHHHHcCCCcEEEECCC
Confidence 77776554444357777643
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.54 E-value=0.071 Score=43.74 Aligned_cols=86 Identities=14% Similarity=0.130 Sum_probs=54.9
Q ss_pred CCCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---Ccc
Q 024016 7 PAESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQ 82 (274)
Q Consensus 7 ~~~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~ 82 (274)
.++.+++-|.| .|.+|.++++.|.+.|+ +|++. +|++++.+.+.+. + .+ ...++.++.. .++
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-~------~~--~~~~~~~~~~D~~~~~ 69 (262)
T 1zem_A 4 KFNGKVCLVTGAGGNIGLATALRLAEEGT----AIALL-DMNREALEKAEAS-V------RE--KGVEARSYVCDVTSEE 69 (262)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-H------HT--TTSCEEEEECCTTCHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-H------Hh--cCCcEEEEEecCCCHH
Confidence 34556777775 58999999999999999 99999 9998877655431 0 00 0123333333 345
Q ss_pred cHHHHHHHhccccCCCCEEEEecC
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
.+..+++++...+.+=.++|+..+
T Consensus 70 ~~~~~~~~~~~~~g~id~lv~nAg 93 (262)
T 1zem_A 70 AVIGTVDSVVRDFGKIDFLFNNAG 93 (262)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHhCCCCEEEECCC
Confidence 566777766554433357777643
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.025 Score=46.42 Aligned_cols=86 Identities=15% Similarity=0.245 Sum_probs=57.0
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---Ccc
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQ 82 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~ 82 (274)
.++.+++-|.|. |-+|.++++.|.+.|+ +|++. +|++++.+.+.+. +. . ...++.++.. .++
T Consensus 3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-~~---~-----~~~~~~~~~~Dv~~~~ 68 (257)
T 3imf_A 3 AMKEKVVIITGGSSGMGKGMATRFAKEGA----RVVIT-GRTKEKLEEAKLE-IE---Q-----FPGQILTVQMDVRNTD 68 (257)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-HC---C-----STTCEEEEECCTTCHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-HH---h-----cCCcEEEEEccCCCHH
Confidence 455566766664 8999999999999999 99999 9999887766541 00 0 1123444443 345
Q ss_pred cHHHHHHHhccccCCCCEEEEecC
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
.++++++++...+.+=.++|+..+
T Consensus 69 ~v~~~~~~~~~~~g~id~lv~nAg 92 (257)
T 3imf_A 69 DIQKMIEQIDEKFGRIDILINNAA 92 (257)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCC
Confidence 677777776654444457787644
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.084 Score=43.25 Aligned_cols=81 Identities=17% Similarity=0.153 Sum_probs=52.6
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccH
Q 024016 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~ 84 (274)
+.+++-|.| .|.+|.++++.|.+.|+ +|++. +|++++.+.+.+. + .+ ++.++.. .++.+
T Consensus 11 ~~k~vlVTGas~gIG~~ia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-~------~~-----~~~~~~~D~~d~~~v 73 (263)
T 3ak4_A 11 SGRKAIVTGGSKGIGAAIARALDKAGA----TVAIA-DLDVMAAQAVVAG-L------EN-----GGFAVEVDVTKRASV 73 (263)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHT-C------TT-----CCEEEECCTTCHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-H------hc-----CCeEEEEeCCCHHHH
Confidence 345777775 58999999999999999 99999 9998877665431 0 00 2222222 24556
Q ss_pred HHHHHHhccccCCCCEEEEecC
Q 024016 85 KDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~~ 106 (274)
.++++++...+.+=.++|+..+
T Consensus 74 ~~~~~~~~~~~g~iD~lv~~Ag 95 (263)
T 3ak4_A 74 DAAMQKAIDALGGFDLLCANAG 95 (263)
T ss_dssp HHHHHHHHHHHTCCCEEEECCC
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 6777666544433356777643
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.024 Score=49.27 Aligned_cols=86 Identities=15% Similarity=0.223 Sum_probs=60.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH-HcCcee-c--cCc---hhhccCCCEEEEeeCc-
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE-SIGVKV-L--SDN---NAVVEYSDVVVFSVKP- 81 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~-~~g~~~-~--~~~---~~~~~~aDiIil~v~~- 81 (274)
..+|.|+|+|.+|...++.+...|. +|++. ++++++.+.+. +.|+.. . .+. .+.....|+||-++..
T Consensus 188 g~~VlV~GaG~vG~~~~q~a~~~Ga----~Vi~~-~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~~g~~ 262 (366)
T 1yqd_A 188 GKHIGIVGLGGLGHVAVKFAKAFGS----KVTVI-STSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAV 262 (366)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTCEEEEEECCSSC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCCCCEEEECCCcH
Confidence 4689999999999999999888998 89999 99998888777 577642 1 111 1223467999988864
Q ss_pred ccHHHHHHHhccccCCCCEEEEe
Q 024016 82 QVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 82 ~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
..+...++-+. ++..++.+
T Consensus 263 ~~~~~~~~~l~----~~G~iv~~ 281 (366)
T 1yqd_A 263 HPLLPLFGLLK----SHGKLILV 281 (366)
T ss_dssp CCSHHHHHHEE----EEEEEEEC
T ss_pred HHHHHHHHHHh----cCCEEEEE
Confidence 35666655443 33455544
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.038 Score=45.57 Aligned_cols=80 Identities=11% Similarity=0.067 Sum_probs=54.6
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccHHH
Q 024016 12 ILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVKD 86 (274)
Q Consensus 12 ~IgiI--G~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~~~ 86 (274)
|+.+| |.+-+|.++++.|.+.|. +|.+. +|++++.++..+. ..+ ...++..+.+ .+++++.
T Consensus 10 KvalVTGas~GIG~aia~~la~~Ga----~Vvi~-~~~~~~~~~~~~~-------l~~--~g~~~~~~~~Dv~~~~~v~~ 75 (255)
T 4g81_D 10 KTALVTGSARGLGFAYAEGLAAAGA----RVILN-DIRATLLAESVDT-------LTR--KGYDAHGVAFDVTDELAIEA 75 (255)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC----EEEEC-CSCHHHHHHHHHH-------HHH--TTCCEEECCCCTTCHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-------HHh--cCCcEEEEEeeCCCHHHHHH
Confidence 66677 668899999999999999 99999 9999877665430 000 0122232222 4667888
Q ss_pred HHHHhccccCCCCEEEEec
Q 024016 87 VAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~ 105 (274)
+++++...+.+=.++|+..
T Consensus 76 ~~~~~~~~~G~iDiLVNNA 94 (255)
T 4g81_D 76 AFSKLDAEGIHVDILINNA 94 (255)
T ss_dssp HHHHHHHTTCCCCEEEECC
T ss_pred HHHHHHHHCCCCcEEEECC
Confidence 8888776655445778764
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.50 E-value=0.057 Score=44.65 Aligned_cols=82 Identities=18% Similarity=0.185 Sum_probs=54.1
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEee---Cc
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSV---KP 81 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v---~~ 81 (274)
.++.+++-|.|. |-+|.++++.|.+.|+ +|++. +|++++.+.+.+ .+ .++.++.. .+
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~----~V~~~-~r~~~~~~~~~~~~~-------------~~~~~~~~Dv~~~ 69 (271)
T 3tzq_B 8 ELENKVAIITGACGGIGLETSRVLARAGA----RVVLA-DLPETDLAGAAASVG-------------RGAVHHVVDLTNE 69 (271)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ECTTSCHHHHHHHHC-------------TTCEEEECCTTCH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-cCCHHHHHHHHHHhC-------------CCeEEEECCCCCH
Confidence 344556666665 8999999999999999 99999 999887766543 21 12222222 34
Q ss_pred ccHHHHHHHhccccCCCCEEEEecC
Q 024016 82 QVVKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 82 ~~~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
+.++++++++...+.+=.++|+..+
T Consensus 70 ~~v~~~~~~~~~~~g~id~lv~nAg 94 (271)
T 3tzq_B 70 VSVRALIDFTIDTFGRLDIVDNNAA 94 (271)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCC
Confidence 5577777766554444457776643
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.50 E-value=0.044 Score=45.13 Aligned_cols=86 Identities=10% Similarity=0.129 Sum_probs=57.4
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---Ccc
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQ 82 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~ 82 (274)
.++.+++-|.|. |-+|.++++.|.+.|+ +|++. +|++++.+.+.+. ..+ ...++.++.. .++
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-------~~~--~~~~~~~~~~Dv~~~~ 73 (264)
T 3ucx_A 8 LLTDKVVVISGVGPALGTTLARRCAEQGA----DLVLA-ARTVERLEDVAKQ-------VTD--TGRRALSVGTDITDDA 73 (264)
T ss_dssp TTTTCEEEEESCCTTHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHH--TTCCEEEEECCTTCHH
T ss_pred CcCCcEEEEECCCcHHHHHHHHHHHHCcC----EEEEE-eCCHHHHHHHHHH-------HHh--cCCcEEEEEcCCCCHH
Confidence 345566777765 7899999999999999 99999 9998887765531 001 1234444444 345
Q ss_pred cHHHHHHHhccccCCCCEEEEecC
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
.++++++++...+.+=.++|+..+
T Consensus 74 ~v~~~~~~~~~~~g~id~lv~nAg 97 (264)
T 3ucx_A 74 QVAHLVDETMKAYGRVDVVINNAF 97 (264)
T ss_dssp HHHHHHHHHHHHTSCCSEEEECCC
T ss_pred HHHHHHHHHHHHcCCCcEEEECCC
Confidence 577777777655544457787653
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.08 Score=45.93 Aligned_cols=87 Identities=15% Similarity=0.101 Sum_probs=59.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-ccC------chhhc-----cCCCEEEE
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-LSD------NNAVV-----EYSDVVVF 77 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~-~~~------~~~~~-----~~aDiIil 77 (274)
..+|.|+|+|.+|...++.+...|. .+|++. ++++++.+.+++.|+.. .+. ..+.+ ...|+||-
T Consensus 192 g~~VlV~GaG~vG~~aiqlak~~Ga---~~Vi~~-~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid 267 (373)
T 1p0f_A 192 GSTCAVFGLGGVGFSAIVGCKAAGA---SRIIGV-GTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVE 267 (373)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTC---SEEEEE-CSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC---CeEEEE-CCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEE
Confidence 4689999999999988887777775 258888 99999998888888642 211 11111 15799999
Q ss_pred eeCc-ccHHHHHHHhccccCCC-CEEEEe
Q 024016 78 SVKP-QVVKDVAMQIRPLLSRK-KLLVSV 104 (274)
Q Consensus 78 ~v~~-~~~~~v~~~i~~~l~~~-~~vis~ 104 (274)
|+.. ..+...++ .++++ ..++.+
T Consensus 268 ~~g~~~~~~~~~~----~l~~~~G~iv~~ 292 (373)
T 1p0f_A 268 CAGRIETMMNALQ----STYCGSGVTVVL 292 (373)
T ss_dssp CSCCHHHHHHHHH----TBCTTTCEEEEC
T ss_pred CCCCHHHHHHHHH----HHhcCCCEEEEE
Confidence 9864 44444443 34555 556644
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.45 E-value=0.09 Score=43.26 Aligned_cols=80 Identities=11% Similarity=0.144 Sum_probs=53.8
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEee---Cccc
Q 024016 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSV---KPQV 83 (274)
Q Consensus 9 ~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v---~~~~ 83 (274)
+.+++-|.| .|.+|.++++.|.+.|+ +|++. +|++++.+.+.+ .+ .++.++.. .++.
T Consensus 5 ~~k~vlITGas~gIG~aia~~l~~~G~----~V~~~-~r~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~~ 66 (263)
T 2a4k_A 5 SGKTILVTGAASGIGRAALDLFAREGA----SLVAV-DREERLLAEAVAALE-------------AEAIAVVADVSDPKA 66 (263)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHTCC-------------SSEEEEECCTTSHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHHhc-------------CceEEEEcCCCCHHH
Confidence 445777775 58999999999999999 99999 999887766553 11 12333333 3455
Q ss_pred HHHHHHHhccccCCCCEEEEecC
Q 024016 84 VKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
++.+++++...+.+=.++|+..+
T Consensus 67 v~~~~~~~~~~~g~iD~lvnnAg 89 (263)
T 2a4k_A 67 VEAVFAEALEEFGRLHGVAHFAG 89 (263)
T ss_dssp HHHHHHHHHHHHSCCCEEEEGGG
T ss_pred HHHHHHHHHHHcCCCcEEEECCC
Confidence 66777666554433357776643
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0097 Score=53.15 Aligned_cols=65 Identities=20% Similarity=0.122 Sum_probs=48.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH--HHHHHHcCceec--cCchhhccCCCEEEEee
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR--RDAFESIGVKVL--SDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~--~~~l~~~g~~~~--~~~~~~~~~aDiIil~v 79 (274)
+.+||.|||.|..|.+.++.|.+.|+ +|+++ |.+... ...+. .|+.+. ....+.++++|.|+++.
T Consensus 4 ~~~~v~viG~G~~G~~~a~~l~~~G~----~v~~~-D~~~~~~~~~~l~-~G~~~~~g~~~~~~~~~~d~vV~s~ 72 (439)
T 2x5o_A 4 QGKNVVIIGLGLTGLSCVDFFLARGV----TPRVM-DTRMTPPGLDKLP-EAVERHTGSLNDEWLMAADLIVASP 72 (439)
T ss_dssp TTCCEEEECCHHHHHHHHHHHHTTTC----CCEEE-ESSSSCTTGGGSC-TTSCEEESSCCHHHHHTCSEEEECT
T ss_pred CCCEEEEEeecHHHHHHHHHHHhCCC----EEEEE-ECCCCcchhHHhh-CCCEEEECCCcHHHhccCCEEEeCC
Confidence 45789999999999999999999999 99999 765422 13344 677653 22345566899999874
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.094 Score=44.15 Aligned_cols=90 Identities=16% Similarity=0.191 Sum_probs=58.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHh-CCCCCCCcEEEEeCCCHHHHHHHHH----cCc---ee-ccCchhhc-cCCCEEEEe
Q 024016 9 ESFILGFIGAGKMAESIAKGVAK-SGVLPPDRICTAVHSNLKRRDAFES----IGV---KV-LSDNNAVV-EYSDVVVFS 78 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~-~g~~~~~~v~v~~~r~~~~~~~l~~----~g~---~~-~~~~~~~~-~~aDiIil~ 78 (274)
...+|..||||..|.+... +.+ .|. +|+.+ |.+++..+..++ .|. ++ ..+..+.- ...|+|+++
T Consensus 122 ~g~rVLDIGcG~G~~ta~~-lA~~~ga----~V~gI-Dis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~ 195 (298)
T 3fpf_A 122 RGERAVFIGGGPLPLTGIL-LSHVYGM----RVNVV-EIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVA 195 (298)
T ss_dssp TTCEEEEECCCSSCHHHHH-HHHTTCC----EEEEE-ESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEEC
T ss_pred CcCEEEEECCCccHHHHHH-HHHccCC----EEEEE-ECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEEC
Confidence 3469999999986532111 122 355 89999 999987765554 343 22 22322222 468999987
Q ss_pred eCcccHHHHHHHhccccCCCCEEEEe
Q 024016 79 VKPQVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 79 v~~~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
.-......+++++...++||..++..
T Consensus 196 a~~~d~~~~l~el~r~LkPGG~Lvv~ 221 (298)
T 3fpf_A 196 ALAEPKRRVFRNIHRYVDTETRIIYR 221 (298)
T ss_dssp TTCSCHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCccCHHHHHHHHHHHcCCCcEEEEE
Confidence 65556678888888888888777743
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.047 Score=45.96 Aligned_cols=83 Identities=13% Similarity=0.041 Sum_probs=54.4
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccHH
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVK 85 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~~ 85 (274)
.++|-|.|+ |.+|.++++.|.+.|+ +|++. +|++++.+.+.+. ..+ ...++.++.+ .++.+.
T Consensus 31 gk~vlVTGas~gIG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~~~-------l~~--~~~~~~~~~~Dv~d~~~v~ 96 (301)
T 3tjr_A 31 GRAAVVTGGASGIGLATATEFARRGA----RLVLS-DVDQPALEQAVNG-------LRG--QGFDAHGVVCDVRHLDEMV 96 (301)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHH--TTCCEEEEECCTTCHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-------HHh--cCCceEEEEccCCCHHHHH
Confidence 456777765 8899999999999999 99999 9999887665431 000 1234444443 244567
Q ss_pred HHHHHhccccCCCCEEEEecC
Q 024016 86 DVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~~ 106 (274)
++++++...+.+=.++|+..+
T Consensus 97 ~~~~~~~~~~g~id~lvnnAg 117 (301)
T 3tjr_A 97 RLADEAFRLLGGVDVVFSNAG 117 (301)
T ss_dssp HHHHHHHHHHSSCSEEEECCC
T ss_pred HHHHHHHHhCCCCCEEEECCC
Confidence 777766554433357777644
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=95.42 E-value=0.096 Score=45.42 Aligned_cols=87 Identities=15% Similarity=0.135 Sum_probs=59.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-ccC------chhhc-----cCCCEEEE
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-LSD------NNAVV-----EYSDVVVF 77 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~-~~~------~~~~~-----~~aDiIil 77 (274)
..+|.|+|+|.+|...++.+...|. .+|++. ++++++.+.+++.|+.. .+. ..+.+ ...|+||-
T Consensus 192 g~~VlV~GaG~vG~~a~qla~~~Ga---~~Vi~~-~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid 267 (374)
T 2jhf_A 192 GSTCAVFGLGGVGLSVIMGCKAAGA---ARIIGV-DINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFE 267 (374)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-CSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC---CeEEEE-cCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEE
Confidence 4689999999999999888877885 258888 99999998888888642 211 11111 15799999
Q ss_pred eeCc-ccHHHHHHHhccccCCC-CEEEEe
Q 024016 78 SVKP-QVVKDVAMQIRPLLSRK-KLLVSV 104 (274)
Q Consensus 78 ~v~~-~~~~~v~~~i~~~l~~~-~~vis~ 104 (274)
|+.. ..+...++- ++++ ..++.+
T Consensus 268 ~~g~~~~~~~~~~~----l~~~~G~iv~~ 292 (374)
T 2jhf_A 268 VIGRLDTMVTALSC----CQEAYGVSVIV 292 (374)
T ss_dssp CSCCHHHHHHHHHH----BCTTTCEEEEC
T ss_pred CCCCHHHHHHHHHH----hhcCCcEEEEe
Confidence 9864 444444443 4455 456644
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.099 Score=45.39 Aligned_cols=87 Identities=17% Similarity=0.100 Sum_probs=58.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-ccC------chhhc-----cCCCEEEE
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-LSD------NNAVV-----EYSDVVVF 77 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~-~~~------~~~~~-----~~aDiIil 77 (274)
..+|.|+|+|.+|...++.+...|. .+|++. ++++++.+.+.+.|+.. .+. ..+.+ ...|+||-
T Consensus 196 g~~VlV~GaG~vG~~aiqlak~~Ga---~~Vi~~-~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid 271 (376)
T 1e3i_A 196 GSTCAVFGLGCVGLSAIIGCKIAGA---SRIIAI-DINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLD 271 (376)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-CSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC---CeEEEE-cCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEE
Confidence 4689999999999998888777775 258888 99999998888888642 211 11111 15799999
Q ss_pred eeCc-ccHHHHHHHhccccCCC-CEEEEe
Q 024016 78 SVKP-QVVKDVAMQIRPLLSRK-KLLVSV 104 (274)
Q Consensus 78 ~v~~-~~~~~v~~~i~~~l~~~-~~vis~ 104 (274)
|+.. ..+...++ .++++ ..++.+
T Consensus 272 ~~G~~~~~~~~~~----~l~~~~G~iv~~ 296 (376)
T 1e3i_A 272 CAGTAQTLKAAVD----CTVLGWGSCTVV 296 (376)
T ss_dssp SSCCHHHHHHHHH----TBCTTTCEEEEC
T ss_pred CCCCHHHHHHHHH----HhhcCCCEEEEE
Confidence 8864 34444443 34555 455544
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.41 E-value=0.11 Score=43.52 Aligned_cols=90 Identities=13% Similarity=0.202 Sum_probs=55.9
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC---ccc
Q 024016 8 AESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK---PQV 83 (274)
Q Consensus 8 ~~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~---~~~ 83 (274)
++.++|.|.| .|.+|.++++.|.+.|+ +|++. +|++++.+.+.+. +. ..... ....++.++... ++.
T Consensus 16 l~~k~vlVTGasggIG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~~~-l~--~~~~~-~~~~~~~~~~~D~~~~~~ 86 (303)
T 1yxm_A 16 LQGQVAIVTGGATGIGKAIVKELLELGS----NVVIA-SRKLERLKSAADE-LQ--ANLPP-TKQARVIPIQCNIRNEEE 86 (303)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-HH--HTSCT-TCCCCEEEEECCTTCHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-HH--hhccc-cCCccEEEEecCCCCHHH
Confidence 3446777775 59999999999999999 99999 9998876655431 00 00000 012345554443 445
Q ss_pred HHHHHHHhccccCCCCEEEEecC
Q 024016 84 VKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
+..+++++...+.+=.+||++.+
T Consensus 87 v~~~~~~~~~~~g~id~li~~Ag 109 (303)
T 1yxm_A 87 VNNLVKSTLDTFGKINFLVNNGG 109 (303)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 67777766554433357787654
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=95.40 E-value=0.011 Score=50.43 Aligned_cols=64 Identities=14% Similarity=0.122 Sum_probs=45.9
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHH-cCceec----cC----chhhccCCCEEEEee
Q 024016 11 FILGFIGA-GKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFES-IGVKVL----SD----NNAVVEYSDVVVFSV 79 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~-g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~----~~----~~~~~~~aDiIil~v 79 (274)
|||.|.|+ |.+|+.+++.|++. |+ +|++. +|++++.+.+.. .++... .+ ..++++++|+||-+.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~d~vih~A 75 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHY----EVYGL-DIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLV 75 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTC----EEEEE-ESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECB
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCC----EEEEE-eCCcchHHHhhcCCCeEEEeccccCcHHHHHhhccCCCEEEEcc
Confidence 58999987 99999999999998 88 99999 888776554432 233321 11 123456789999764
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.015 Score=48.83 Aligned_cols=63 Identities=16% Similarity=0.204 Sum_probs=43.9
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec-cC-----chhhccCCCEEEEee
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SD-----NNAVVEYSDVVVFSV 79 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~-~~-----~~~~~~~aDiIil~v 79 (274)
|||.|.|+ |.+|+++++.|++.|+ +|++. +|+++........++... .| ..+.++. |+||-+.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~----~V~~~-~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-d~vih~A 70 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGY----EVVVV-DNLSSGRREFVNPSAELHVRDLKDYSWGAGIKG-DVVFHFA 70 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-CCCSSCCGGGSCTTSEEECCCTTSTTTTTTCCC-SEEEECC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC----EEEEE-eCCCCCchhhcCCCceEEECccccHHHHhhcCC-CEEEECC
Confidence 58999987 9999999999999999 99999 887655433322333221 11 2233444 9998775
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.079 Score=43.24 Aligned_cols=93 Identities=12% Similarity=0.156 Sum_probs=55.2
Q ss_pred CCCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC---cc
Q 024016 7 PAESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK---PQ 82 (274)
Q Consensus 7 ~~~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~---~~ 82 (274)
.++.++|-|.| .|.+|.++++.|++.|+ +|++. +|++++.+.+.+. +.... ..+.....++.++... ++
T Consensus 4 ~~~~k~vlITGasggiG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~D~~~~~ 76 (264)
T 2pd6_A 4 RLRSALALVTGAGSGIGRAVSVRLAGEGA----TVAAC-DLDRAAAQETVRL-LGGPG-SKEGPPRGNHAAFQADVSEAR 76 (264)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHHT-C-------------CCEEEECCTTSHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCC----EEEEE-eCChHHHHHHHHH-HHhcC-ccccccCcceEEEEecCCCHH
Confidence 34556787785 59999999999999999 99999 9998877665541 10000 0000111234444432 34
Q ss_pred cHHHHHHHhccccCCC-CEEEEecC
Q 024016 83 VVKDVAMQIRPLLSRK-KLLVSVAA 106 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~-~~vis~~~ 106 (274)
.+.++++++...+.+= .+||+..+
T Consensus 77 ~~~~~~~~~~~~~g~i~d~vi~~Ag 101 (264)
T 2pd6_A 77 AARCLLEQVQACFSRPPSVVVSCAG 101 (264)
T ss_dssp HHHHHHHHHHHHHSSCCSEEEECCC
T ss_pred HHHHHHHHHHHHhCCCCeEEEECCC
Confidence 5667776665444332 46787644
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.39 E-value=0.086 Score=43.61 Aligned_cols=86 Identities=9% Similarity=0.196 Sum_probs=53.0
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccH
Q 024016 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~ 84 (274)
+.++|.|.| .|.+|.++++.|++.|+ +|++. +|++++.+.+.+. + .+.-....+.++.. .++.+
T Consensus 31 ~~k~vlVTGasggIG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~~~-~------~~~~~~~~~~~~~~Dl~~~~~v 98 (279)
T 1xg5_A 31 RDRLALVTGASGGIGAAVARALVQQGL----KVVGC-ARTVGNIEELAAE-C------KSAGYPGTLIPYRCDLSNEEDI 98 (279)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-H------HHTTCSSEEEEEECCTTCHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC----EEEEE-ECChHHHHHHHHH-H------HhcCCCceEEEEEecCCCHHHH
Confidence 345677775 59999999999999999 99999 9998877655431 0 00000112333332 24456
Q ss_pred HHHHHHhccccCCCCEEEEecC
Q 024016 85 KDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~~ 106 (274)
..+++++...+.+=.+||+..+
T Consensus 99 ~~~~~~~~~~~g~iD~vi~~Ag 120 (279)
T 1xg5_A 99 LSMFSAIRSQHSGVDICINNAG 120 (279)
T ss_dssp HHHHHHHHHHHCCCSEEEECCC
T ss_pred HHHHHHHHHhCCCCCEEEECCC
Confidence 6777666544433346776643
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.38 E-value=0.056 Score=44.64 Aligned_cols=85 Identities=15% Similarity=0.103 Sum_probs=54.6
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---Cccc
Q 024016 8 AESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQV 83 (274)
Q Consensus 8 ~~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~ 83 (274)
++.++|-|.| .|.+|.++++.|.+.|+ +|++. +|++++.+.+.+. ..+ ...++.++.. .++.
T Consensus 29 l~~k~vlITGasggIG~~la~~L~~~G~----~V~~~-~r~~~~~~~~~~~-------l~~--~~~~~~~~~~Dl~~~~~ 94 (272)
T 1yb1_A 29 VTGEIVLITGAGHGIGRLTAYEFAKLKS----KLVLW-DINKHGLEETAAK-------CKG--LGAKVHTFVVDCSNRED 94 (272)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHH--TTCCEEEEECCTTCHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC----EEEEE-EcCHHHHHHHHHH-------HHh--cCCeEEEEEeeCCCHHH
Confidence 3446787775 58999999999999999 99999 9998776654431 000 0123333333 2445
Q ss_pred HHHHHHHhccccCCCCEEEEecC
Q 024016 84 VKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
+.++++++...+.+=..||++.+
T Consensus 95 v~~~~~~~~~~~g~iD~li~~Ag 117 (272)
T 1yb1_A 95 IYSSAKKVKAEIGDVSILVNNAG 117 (272)
T ss_dssp HHHHHHHHHHHTCCCSEEEECCC
T ss_pred HHHHHHHHHHHCCCCcEEEECCC
Confidence 67777766554434357777643
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.067 Score=44.45 Aligned_cols=78 Identities=18% Similarity=0.187 Sum_probs=52.0
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEee---CcccHH
Q 024016 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSV---KPQVVK 85 (274)
Q Consensus 11 ~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v---~~~~~~ 85 (274)
+++-|.| .|-+|.++++.|.+.|+ +|++. +|++++.+.+.+ .+ .++.++.+ .++.++
T Consensus 30 k~vlVTGas~gIG~aia~~la~~G~----~V~~~-~r~~~~~~~~~~~~~-------------~~~~~~~~Dv~d~~~v~ 91 (277)
T 3gvc_A 30 KVAIVTGAGAGIGLAVARRLADEGC----HVLCA-DIDGDAADAAATKIG-------------CGAAACRVDVSDEQQII 91 (277)
T ss_dssp CEEEETTTTSTHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHHHHC-------------SSCEEEECCTTCHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHHcC-------------CcceEEEecCCCHHHHH
Confidence 4555555 58999999999999999 99999 999888776654 21 12223332 345567
Q ss_pred HHHHHhccccCCCCEEEEecC
Q 024016 86 DVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~~ 106 (274)
.+++++...+.+=.++|+..+
T Consensus 92 ~~~~~~~~~~g~iD~lvnnAg 112 (277)
T 3gvc_A 92 AMVDACVAAFGGVDKLVANAG 112 (277)
T ss_dssp HHHHHHHHHHSSCCEEEECCC
T ss_pred HHHHHHHHHcCCCCEEEECCC
Confidence 777766554433357776643
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.067 Score=44.52 Aligned_cols=76 Identities=17% Similarity=0.167 Sum_probs=52.5
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEee---CcccHH
Q 024016 12 ILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSV---KPQVVK 85 (274)
Q Consensus 12 ~IgiI--G~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v---~~~~~~ 85 (274)
|+++| |.+-+|.++++.|.+.|. +|.+. +|++++++++.+ .|. +.+.+.. .+++++
T Consensus 30 KvalVTGas~GIG~aiA~~la~~Ga----~V~i~-~r~~~~l~~~~~~~g~-------------~~~~~~~Dv~~~~~v~ 91 (273)
T 4fgs_A 30 KIAVITGATSGIGLAAAKRFVAEGA----RVFIT-GRRKDVLDAAIAEIGG-------------GAVGIQADSANLAELD 91 (273)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHHCT-------------TCEEEECCTTCHHHHH
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHHcCC-------------CeEEEEecCCCHHHHH
Confidence 67777 557899999999999999 99999 999988876654 221 1222222 456678
Q ss_pred HHHHHhccccCCCCEEEEec
Q 024016 86 DVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~ 105 (274)
.+++++...+.+=.++|...
T Consensus 92 ~~~~~~~~~~G~iDiLVNNA 111 (273)
T 4fgs_A 92 RLYEKVKAEAGRIDVLFVNA 111 (273)
T ss_dssp HHHHHHHHHHSCEEEEEECC
T ss_pred HHHHHHHHHcCCCCEEEECC
Confidence 88877765553334566553
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=95.37 E-value=0.024 Score=47.75 Aligned_cols=85 Identities=16% Similarity=0.115 Sum_probs=59.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCc---h---hhccCCCEEEEeeCcc
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDN---N---AVVEYSDVVVFSVKPQ 82 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~---~---~~~~~aDiIil~v~~~ 82 (274)
..+|.|+|+ |.+|...++.+...|. +|++. ++++++.+.+.+.|+...-+. . +.+...|+||- +...
T Consensus 126 g~~vlV~Ga~G~vG~~~~~~a~~~Ga----~Vi~~-~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g~~ 199 (302)
T 1iz0_A 126 GEKVLVQAAAGALGTAAVQVARAMGL----RVLAA-ASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-VRGK 199 (302)
T ss_dssp TCEEEESSTTBHHHHHHHHHHHHTTC----EEEEE-ESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-CSCT
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-CCHH
Confidence 468999998 9999999998888998 99999 999999888877776421111 1 22356888888 7655
Q ss_pred cHHHHHHHhccccCCCCEEEEe
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~ 104 (274)
.+...++. ++++..++.+
T Consensus 200 ~~~~~~~~----l~~~G~~v~~ 217 (302)
T 1iz0_A 200 EVEESLGL----LAHGGRLVYI 217 (302)
T ss_dssp THHHHHTT----EEEEEEEEEC
T ss_pred HHHHHHHh----hccCCEEEEE
Confidence 45444433 3344455543
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.021 Score=48.64 Aligned_cols=66 Identities=8% Similarity=0.097 Sum_probs=44.1
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH---HHHHHc-----Cceec-------cCchhhccCC
Q 024016 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR---DAFESI-----GVKVL-------SDNNAVVEYS 72 (274)
Q Consensus 9 ~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~---~~l~~~-----g~~~~-------~~~~~~~~~a 72 (274)
++++|.|.| +|-+|+++++.|++.|+ +|++. .|+++.. ..+.+. ++... .+..++++++
T Consensus 4 ~~~~vlVTGatGfIG~~l~~~L~~~G~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 78 (337)
T 2c29_D 4 QSETVCVTGASGFIGSWLVMRLLERGY----TVRAT-VRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGC 78 (337)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTTC----EEEEE-ESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTC
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCC----EEEEE-ECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCC
Confidence 346898888 79999999999999999 99988 7776532 222111 12211 1234566789
Q ss_pred CEEEEee
Q 024016 73 DVVVFSV 79 (274)
Q Consensus 73 DiIil~v 79 (274)
|+||-+.
T Consensus 79 d~Vih~A 85 (337)
T 2c29_D 79 TGVFHVA 85 (337)
T ss_dssp SEEEECC
T ss_pred CEEEEec
Confidence 9988654
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=95.36 E-value=0.12 Score=42.05 Aligned_cols=86 Identities=15% Similarity=0.121 Sum_probs=53.0
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhc-cCCCEEEEe---eCccc
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVV-EYSDVVVFS---VKPQV 83 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~-~~aDiIil~---v~~~~ 83 (274)
+.+++-|.|. |.+|.++++.|.+.|+ +|++. +|++++.+.+.+. ..+.- .++..+..- ..++.
T Consensus 11 ~~k~vlVTGas~gIG~aia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-------~~~~~~~~~~~~~~D~~~~~~~~ 78 (252)
T 3f1l_A 11 NDRIILVTGASDGIGREAAMTYARYGA----TVILL-GRNEEKLRQVASH-------INEETGRQPQWFILDLLTCTSEN 78 (252)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHHHHSCCCEEEECCTTTCCHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-------HHhhcCCCceEEEEecccCCHHH
Confidence 4456666655 8999999999999999 99999 9999887665431 00000 011111111 12445
Q ss_pred HHHHHHHhccccCCCCEEEEecC
Q 024016 84 VKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
++++++++...+.+=.++|+..+
T Consensus 79 ~~~~~~~~~~~~g~id~lv~nAg 101 (252)
T 3f1l_A 79 CQQLAQRIAVNYPRLDGVLHNAG 101 (252)
T ss_dssp HHHHHHHHHHHCSCCSEEEECCC
T ss_pred HHHHHHHHHHhCCCCCEEEECCc
Confidence 67777776655444457777643
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.36 E-value=0.028 Score=48.87 Aligned_cols=86 Identities=17% Similarity=0.266 Sum_probs=60.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-cc-Cc----hhhccCCCEEEEeeCcc-
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-LS-DN----NAVVEYSDVVVFSVKPQ- 82 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~-~~-~~----~~~~~~aDiIil~v~~~- 82 (274)
..+|.|+|+|.+|...++.+...|. +|++. ++++++.+.+.+.|+.. .+ +. .++....|+||-|+...
T Consensus 195 g~~VlV~GaG~vG~~aiqlak~~Ga----~Vi~~-~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~~~ 269 (369)
T 1uuf_A 195 GKKVGVVGIGGLGHMGIKLAHAMGA----HVVAF-TTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPH 269 (369)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCCCHH
Confidence 4689999999999999988888898 89999 99999988888888642 21 11 12224679999998643
Q ss_pred cHHHHHHHhccccCCCCEEEEe
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~ 104 (274)
.+...++-+ +++..++.+
T Consensus 270 ~~~~~~~~l----~~~G~iv~~ 287 (369)
T 1uuf_A 270 NLDDFTTLL----KRDGTMTLV 287 (369)
T ss_dssp CHHHHHTTE----EEEEEEEEC
T ss_pred HHHHHHHHh----ccCCEEEEe
Confidence 555555433 344455544
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.15 Score=42.59 Aligned_cols=86 Identities=10% Similarity=0.154 Sum_probs=54.8
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---Cccc
Q 024016 8 AESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQV 83 (274)
Q Consensus 8 ~~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~ 83 (274)
++.++|.|.| .|.+|.++++.|.+.|+ +|++. +|++++.+.+.+. ..+. ...++.++.. .++.
T Consensus 24 l~~k~vlITGasggiG~~la~~L~~~G~----~V~~~-~r~~~~~~~~~~~-------l~~~-~~~~~~~~~~Dl~~~~~ 90 (302)
T 1w6u_A 24 FQGKVAFITGGGTGLGKGMTTLLSSLGA----QCVIA-SRKMDVLKATAEQ-------ISSQ-TGNKVHAIQCDVRDPDM 90 (302)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHHH-HSSCEEEEECCTTCHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-------HHHh-cCCceEEEEeCCCCHHH
Confidence 3446777776 58999999999999999 99999 9998776654431 0000 0123444433 3455
Q ss_pred HHHHHHHhccccCCCCEEEEecC
Q 024016 84 VKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
+..+++++...+.+=.++|+..+
T Consensus 91 ~~~~~~~~~~~~g~id~li~~Ag 113 (302)
T 1w6u_A 91 VQNTVSELIKVAGHPNIVINNAA 113 (302)
T ss_dssp HHHHHHHHHHHTCSCSEEEECCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 77777766544433357777654
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.057 Score=46.79 Aligned_cols=86 Identities=12% Similarity=0.157 Sum_probs=58.3
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHh-CCCCCCCcEEEEeCCCHHHHHHHHHcCceec-cC---chhhc-----cCCCEEEEe
Q 024016 10 SFILGFIG-AGKMAESIAKGVAK-SGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SD---NNAVV-----EYSDVVVFS 78 (274)
Q Consensus 10 ~~~IgiIG-~G~mG~~~a~~L~~-~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~-~~---~~~~~-----~~aDiIil~ 78 (274)
..+|.|+| +|.+|...++.+.. .|. +|++. ++++++.+.+.+.|+... +. ..+.+ ...|+||-|
T Consensus 172 g~~VlV~Ga~G~vG~~a~qlak~~~g~----~Vi~~-~~~~~~~~~~~~lGad~vi~~~~~~~~~v~~~~~~g~Dvvid~ 246 (363)
T 4dvj_A 172 APAILIVGGAGGVGSIAVQIARQRTDL----TVIAT-ASRPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAFVFST 246 (363)
T ss_dssp EEEEEEESTTSHHHHHHHHHHHHHCCS----EEEEE-CSSHHHHHHHHHTTCSEEECTTSCHHHHHHTTCSCCEEEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhcCC----EEEEE-eCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHhcCCCceEEEEC
Confidence 45799998 99999987776655 476 89999 999999988888886422 11 11111 257899988
Q ss_pred eCcc-cHHHHHHHhccccCCCCEEEEe
Q 024016 79 VKPQ-VVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 79 v~~~-~~~~v~~~i~~~l~~~~~vis~ 104 (274)
+... .+...++- ++++..++.+
T Consensus 247 ~g~~~~~~~~~~~----l~~~G~iv~~ 269 (363)
T 4dvj_A 247 THTDKHAAEIADL----IAPQGRFCLI 269 (363)
T ss_dssp SCHHHHHHHHHHH----SCTTCEEEEC
T ss_pred CCchhhHHHHHHH----hcCCCEEEEE
Confidence 8643 44444433 4555566655
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.34 E-value=0.11 Score=44.98 Aligned_cols=87 Identities=16% Similarity=0.163 Sum_probs=58.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-ccC------chhhc-----cCCCEEEE
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-LSD------NNAVV-----EYSDVVVF 77 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~-~~~------~~~~~-----~~aDiIil 77 (274)
..+|.|+|+|.+|...++.+...|. .+|++. ++++++.+.+++.|+.. .+. ..+.+ ...|+||-
T Consensus 193 g~~VlV~GaG~vG~~a~qla~~~Ga---~~Vi~~-~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid 268 (374)
T 1cdo_A 193 GSTCAVFGLGAVGLAAVMGCHSAGA---KRIIAV-DLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLE 268 (374)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-CSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC---CEEEEE-cCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEE
Confidence 4689999999999999888877785 258888 99999998888888642 211 11111 15799999
Q ss_pred eeCc-ccHHHHHHHhccccCCC-CEEEEe
Q 024016 78 SVKP-QVVKDVAMQIRPLLSRK-KLLVSV 104 (274)
Q Consensus 78 ~v~~-~~~~~v~~~i~~~l~~~-~~vis~ 104 (274)
++.. ..+...++ .++++ ..++.+
T Consensus 269 ~~g~~~~~~~~~~----~l~~~~G~iv~~ 293 (374)
T 1cdo_A 269 CVGNVGVMRNALE----SCLKGWGVSVLV 293 (374)
T ss_dssp CSCCHHHHHHHHH----TBCTTTCEEEEC
T ss_pred CCCCHHHHHHHHH----HhhcCCcEEEEE
Confidence 8864 34444433 34555 555644
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.077 Score=43.65 Aligned_cols=80 Identities=15% Similarity=0.092 Sum_probs=54.9
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccHHH
Q 024016 12 ILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVKD 86 (274)
Q Consensus 12 ~IgiI--G~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~~~ 86 (274)
|+.+| |.+-+|.++++.|.+.|. +|.++ +|++++++++.+. ..+ ...+++.+.. .+++++.
T Consensus 8 KvalVTGas~GIG~aiA~~la~~Ga----~Vv~~-~~~~~~~~~~~~~-------i~~--~g~~~~~~~~Dvt~~~~v~~ 73 (254)
T 4fn4_A 8 KVVIVTGAGSGIGRAIAKKFALNDS----IVVAV-ELLEDRLNQIVQE-------LRG--MGKEVLGVKADVSKKKDVEE 73 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHH--TTCCEEEEECCTTSHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC----EEEEE-ECCHHHHHHHHHH-------HHh--cCCcEEEEEccCCCHHHHHH
Confidence 55566 557899999999999999 99999 9999887766541 001 1223444433 4567888
Q ss_pred HHHHhccccCCCCEEEEec
Q 024016 87 VAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~ 105 (274)
+++++...+.+=.++|+..
T Consensus 74 ~~~~~~~~~G~iDiLVNNA 92 (254)
T 4fn4_A 74 FVRRTFETYSRIDVLCNNA 92 (254)
T ss_dssp HHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHcCCCCEEEECC
Confidence 8888776655445788754
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.045 Score=45.30 Aligned_cols=84 Identities=11% Similarity=0.073 Sum_probs=52.4
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccH
Q 024016 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~ 84 (274)
+.+++-|.| .|-+|.++++.|.+.|+ +|++. +|++++.+.+.+. ..+. ..++.++.+ .++.+
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G~----~V~~~-~r~~~~~~~~~~~-------~~~~--~~~~~~~~~Dv~d~~~v 92 (270)
T 3ftp_A 27 DKQVAIVTGASRGIGRAIALELARRGA----MVIGT-ATTEAGAEGIGAA-------FKQA--GLEGRGAVLNVNDATAV 92 (270)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHHH-------HHHH--TCCCEEEECCTTCHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-------HHhc--CCcEEEEEEeCCCHHHH
Confidence 344455554 58999999999999999 99999 9998877665431 0000 112222222 34567
Q ss_pred HHHHHHhccccCCCCEEEEecC
Q 024016 85 KDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~~ 106 (274)
+.+++++...+.+=.++|+..+
T Consensus 93 ~~~~~~~~~~~g~iD~lvnnAg 114 (270)
T 3ftp_A 93 DALVESTLKEFGALNVLVNNAG 114 (270)
T ss_dssp HHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 7777776554444357777643
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.32 E-value=0.1 Score=42.90 Aligned_cols=84 Identities=13% Similarity=0.094 Sum_probs=54.3
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccHH
Q 024016 10 SFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVK 85 (274)
Q Consensus 10 ~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~~ 85 (274)
.+++-|.| .|-+|.++++.|.+.|+ +|++. +|++++.+.+.+. ..+ ....++.++.. .++.++
T Consensus 10 ~k~vlVTGas~gIG~aia~~l~~~G~----~V~~~-~r~~~~~~~~~~~-------l~~-~~~~~~~~~~~Dv~~~~~v~ 76 (262)
T 3pk0_A 10 GRSVVVTGGTKGIGRGIATVFARAGA----NVAVA-GRSTADIDACVAD-------LDQ-LGSGKVIGVQTDVSDRAQCD 76 (262)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHT-TSSSCEEEEECCTTSHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH-------HHh-hCCCcEEEEEcCCCCHHHHH
Confidence 34565555 68999999999999999 99999 9999887665431 000 01124444444 345577
Q ss_pred HHHHHhccccCCCCEEEEecC
Q 024016 86 DVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~~ 106 (274)
.+++++...+.+=.++|+..+
T Consensus 77 ~~~~~~~~~~g~id~lvnnAg 97 (262)
T 3pk0_A 77 ALAGRAVEEFGGIDVVCANAG 97 (262)
T ss_dssp HHHHHHHHHHSCCSEEEECCC
T ss_pred HHHHHHHHHhCCCCEEEECCC
Confidence 777776554444457777643
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.029 Score=48.06 Aligned_cols=86 Identities=13% Similarity=0.160 Sum_probs=59.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec-c----Cchhhc----cCCCEEEEeeC
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-S----DNNAVV----EYSDVVVFSVK 80 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~-~----~~~~~~----~~aDiIil~v~ 80 (274)
..+|.|+|+|.+|...++.+...|. +|++. ++++++.+.+.+.|+... + +..+.+ ...|+||.++.
T Consensus 167 g~~VlV~GaG~vG~~a~qla~~~Ga----~Vi~~-~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g 241 (340)
T 3s2e_A 167 GQWVVISGIGGLGHVAVQYARAMGL----RVAAV-DIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAV 241 (340)
T ss_dssp TSEEEEECCSTTHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCC
Confidence 4689999999999999988888898 99999 999999998888886421 1 111111 25788888875
Q ss_pred -cccHHHHHHHhccccCCCCEEEEe
Q 024016 81 -PQVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 81 -~~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
++.+...+.-+ +++..++.+
T Consensus 242 ~~~~~~~~~~~l----~~~G~iv~~ 262 (340)
T 3s2e_A 242 SPKAFSQAIGMV----RRGGTIALN 262 (340)
T ss_dssp CHHHHHHHHHHE----EEEEEEEEC
T ss_pred CHHHHHHHHHHh----ccCCEEEEe
Confidence 34444444433 344455544
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.014 Score=50.67 Aligned_cols=67 Identities=13% Similarity=0.154 Sum_probs=46.7
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCC-CCCCCcEEEEeCCCHHHH-HHHH-HcCceec----cC---chhhccCCCEEEE
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSG-VLPPDRICTAVHSNLKRR-DAFE-SIGVKVL----SD---NNAVVEYSDVVVF 77 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g-~~~~~~v~v~~~r~~~~~-~~l~-~~g~~~~----~~---~~~~~~~aDiIil 77 (274)
++|+|.|.|+ |.+|+.+++.|++.| + +|++. +|++... +.+. ..++... .+ ..++++++|+||-
T Consensus 31 ~~~~ilVtGatG~iG~~l~~~L~~~g~~----~V~~~-~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih 105 (377)
T 2q1s_A 31 ANTNVMVVGGAGFVGSNLVKRLLELGVN----QVHVV-DNLLSAEKINVPDHPAVRFSETSITDDALLASLQDEYDYVFH 105 (377)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCS----EEEEE-CCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCSCCSEEEE
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCc----eEEEE-ECCCCCchhhccCCCceEEEECCCCCHHHHHHHhhCCCEEEE
Confidence 4578999985 999999999999999 8 99999 8876542 1121 1233221 12 2345678999998
Q ss_pred eeC
Q 024016 78 SVK 80 (274)
Q Consensus 78 ~v~ 80 (274)
+..
T Consensus 106 ~A~ 108 (377)
T 2q1s_A 106 LAT 108 (377)
T ss_dssp CCC
T ss_pred CCC
Confidence 863
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.29 E-value=0.016 Score=49.45 Aligned_cols=66 Identities=14% Similarity=0.119 Sum_probs=45.1
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH----HHH---cCceec----cC---chhhcc--C
Q 024016 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FES---IGVKVL----SD---NNAVVE--Y 71 (274)
Q Consensus 9 ~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~----l~~---~g~~~~----~~---~~~~~~--~ 71 (274)
++|+|.|.| +|.+|+++++.|++.|+ +|++. +|++++.+. +.+ .++... .+ ..++++ +
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 78 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGY----DVVIA-DNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHP 78 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-CCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSC
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCC----cEEEE-ecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccC
Confidence 457899997 59999999999999999 99999 887654322 221 133221 12 223444 7
Q ss_pred CCEEEEee
Q 024016 72 SDVVVFSV 79 (274)
Q Consensus 72 aDiIil~v 79 (274)
+|+||-+.
T Consensus 79 ~d~vih~A 86 (341)
T 3enk_A 79 ITAAIHFA 86 (341)
T ss_dssp CCEEEECC
T ss_pred CcEEEECc
Confidence 89999875
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=95.29 E-value=0.11 Score=41.94 Aligned_cols=83 Identities=11% Similarity=0.105 Sum_probs=54.1
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEee---Ccc
Q 024016 8 AESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSV---KPQ 82 (274)
Q Consensus 8 ~~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v---~~~ 82 (274)
++.++|-|.| .|.+|.++++.|.+.|+ +|++. +|++++.+.+.+ ... ..++.++.. .++
T Consensus 4 ~~~k~vlVtGasggiG~~~a~~l~~~G~----~V~~~-~r~~~~~~~~~~~~~~-----------~~~~~~~~~D~~~~~ 67 (251)
T 1zk4_A 4 LDGKVAIITGGTLGIGLAIATKFVEEGA----KVMIT-GRHSDVGEKAAKSVGT-----------PDQIQFFQHDSSDED 67 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHHCC-----------TTTEEEEECCTTCHH
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHHhhc-----------cCceEEEECCCCCHH
Confidence 4556777775 59999999999999999 99999 999877665543 110 022333333 344
Q ss_pred cHHHHHHHhccccCCCCEEEEecC
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
.+.++++++...+.+=..+|+..+
T Consensus 68 ~~~~~~~~~~~~~~~id~li~~Ag 91 (251)
T 1zk4_A 68 GWTKLFDATEKAFGPVSTLVNNAG 91 (251)
T ss_dssp HHHHHHHHHHHHHSSCCEEEECCC
T ss_pred HHHHHHHHHHHHhCCCCEEEECCC
Confidence 567777766554433356776643
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=95.27 E-value=0.064 Score=44.63 Aligned_cols=84 Identities=12% Similarity=0.082 Sum_probs=52.5
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---Cccc
Q 024016 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQV 83 (274)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~ 83 (274)
++.++|.|.|+ |.+|.++++.|.+.|+ +|++. +|++++.+.+.+. + .+ ....++.++.. .++.
T Consensus 26 ~~~k~vlITGasggIG~~la~~l~~~G~----~V~~~-~r~~~~~~~~~~~-~------~~-~~~~~~~~~~~Dl~d~~~ 92 (286)
T 1xu9_A 26 LQGKKVIVTGASKGIGREMAYHLAKMGA----HVVVT-ARSKETLQKVVSH-C------LE-LGAASAHYIAGTMEDMTF 92 (286)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-H------HH-HTCSEEEEEECCTTCHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-H------HH-hCCCceEEEeCCCCCHHH
Confidence 44567877876 9999999999999999 99999 9998877665431 0 00 00112333333 2345
Q ss_pred HHHHHHHhccccCCCCEEEEe
Q 024016 84 VKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~ 104 (274)
+.++++++...+.+=.++|+.
T Consensus 93 v~~~~~~~~~~~g~iD~li~n 113 (286)
T 1xu9_A 93 AEQFVAQAGKLMGGLDMLILN 113 (286)
T ss_dssp HHHHHHHHHHHHTSCSEEEEC
T ss_pred HHHHHHHHHHHcCCCCEEEEC
Confidence 666666654433333467765
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.029 Score=47.78 Aligned_cols=87 Identities=15% Similarity=0.113 Sum_probs=58.8
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec-c-C---chh----hc--cCCCEEE
Q 024016 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-S-D---NNA----VV--EYSDVVV 76 (274)
Q Consensus 9 ~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~-~-~---~~~----~~--~~aDiIi 76 (274)
...+|.|+| +|.+|...++.+...|. +|++. ++++++.+.+.+.|.... + + ..+ .. ...|+||
T Consensus 140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga----~Vi~~-~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~Dvvi 214 (325)
T 3jyn_A 140 PGEIILFHAAAGGVGSLACQWAKALGA----KLIGT-VSSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCPVVY 214 (325)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTC----EEEEE-ESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEE
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCceEEE
Confidence 346899999 79999999999988998 99999 999999988887775321 1 1 111 11 2478888
Q ss_pred EeeCcccHHHHHHHhccccCCCCEEEEe
Q 024016 77 FSVKPQVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 77 l~v~~~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
-|+....+...+.- ++++..++.+
T Consensus 215 d~~g~~~~~~~~~~----l~~~G~iv~~ 238 (325)
T 3jyn_A 215 DGVGQDTWLTSLDS----VAPRGLVVSF 238 (325)
T ss_dssp ESSCGGGHHHHHTT----EEEEEEEEEC
T ss_pred ECCChHHHHHHHHH----hcCCCEEEEE
Confidence 87766544444433 3344455544
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.039 Score=45.57 Aligned_cols=77 Identities=14% Similarity=0.201 Sum_probs=49.6
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccHH
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVK 85 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~~ 85 (274)
.+++-|.|+ |.+|.++++.|.+.|+ +|++. +|++++.+.+... .+.++.+ .++.+.
T Consensus 16 ~k~vlVTGas~gIG~aia~~l~~~G~----~V~~~-~r~~~~~~~~~~~---------------~~~~~~~Dv~d~~~v~ 75 (266)
T 3p19_A 16 KKLVVITGASSGIGEAIARRFSEEGH----PLLLL-ARRVERLKALNLP---------------NTLCAQVDVTDKYTFD 75 (266)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC----CEEEE-ESCHHHHHTTCCT---------------TEEEEECCTTCHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHhhcC---------------CceEEEecCCCHHHHH
Confidence 445666654 8999999999999999 99999 9998765432211 2333332 345566
Q ss_pred HHHHHhccccCCCCEEEEecC
Q 024016 86 DVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~~ 106 (274)
++++++...+.+=.++|+..+
T Consensus 76 ~~~~~~~~~~g~iD~lvnnAg 96 (266)
T 3p19_A 76 TAITRAEKIYGPADAIVNNAG 96 (266)
T ss_dssp HHHHHHHHHHCSEEEEEECCC
T ss_pred HHHHHHHHHCCCCCEEEECCC
Confidence 777666544433346776543
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.26 E-value=0.038 Score=44.62 Aligned_cols=44 Identities=11% Similarity=0.128 Sum_probs=37.4
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH
Q 024016 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (274)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~ 56 (274)
++.++|-|.|. |.+|.++++.|.+.|+ +|++. +|++++.+.+.+
T Consensus 5 ~~~~~vlVTGasggiG~~~a~~l~~~G~----~V~~~-~r~~~~~~~~~~ 49 (244)
T 1cyd_A 5 FSGLRALVTGAGKGIGRDTVKALHASGA----KVVAV-TRTNSDLVSLAK 49 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHH
Confidence 45678888876 9999999999999999 99999 999887766554
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.041 Score=46.92 Aligned_cols=46 Identities=13% Similarity=0.167 Sum_probs=39.7
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCc
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV 59 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~ 59 (274)
...+|.|+|+ |.+|..+++.+...|. +|++. +|++++.+.+.+.|.
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~----~V~~~-~~~~~~~~~~~~~g~ 191 (333)
T 1v3u_A 145 GGETVLVSAAAGAVGSVVGQIAKLKGC----KVVGA-AGSDEKIAYLKQIGF 191 (333)
T ss_dssp SSCEEEEESTTBHHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHHTTC
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHhcCC
Confidence 3468999998 9999999999999998 99999 999988887766664
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.096 Score=41.96 Aligned_cols=78 Identities=15% Similarity=0.105 Sum_probs=50.6
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccHHH
Q 024016 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVKD 86 (274)
Q Consensus 11 ~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~~~ 86 (274)
++|.|.| .|.+|.++++.|++.|+ +|++. +|++++.+.+.+.- . ++.++.. .++.+++
T Consensus 6 k~vlVtGasggiG~~~a~~l~~~G~----~V~~~-~r~~~~~~~~~~~~-----------~--~~~~~~~D~~~~~~~~~ 67 (234)
T 2ehd_A 6 GAVLITGASRGIGEATARLLHAKGY----RVGLM-ARDEKRLQALAAEL-----------E--GALPLPGDVREEGDWAR 67 (234)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHS-----------T--TCEEEECCTTCHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHHh-----------h--hceEEEecCCCHHHHHH
Confidence 4577774 69999999999999999 99999 99988776654310 0 1122222 3445666
Q ss_pred HHHHhccccCCCCEEEEecC
Q 024016 87 VAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~~ 106 (274)
+++++...+.+=..+|+..+
T Consensus 68 ~~~~~~~~~~~id~li~~Ag 87 (234)
T 2ehd_A 68 AVAAMEEAFGELSALVNNAG 87 (234)
T ss_dssp HHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHcCCCCEEEECCC
Confidence 66666544333346777643
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.018 Score=48.46 Aligned_cols=36 Identities=14% Similarity=0.174 Sum_probs=32.2
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLK 49 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~ 49 (274)
++++|.|.|+ |.+|+.+++.|++.|+ +|++. +|++.
T Consensus 6 ~~~~vlVtGatG~iG~~l~~~L~~~g~----~V~~~-~r~~~ 42 (321)
T 3vps_A 6 LKHRILITGGAGFIGGHLARALVASGE----EVTVL-DDLRV 42 (321)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC----CEEEE-CCCSS
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCC----EEEEE-ecCCc
Confidence 4679999988 9999999999999999 99999 88765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 274 | ||||
| d1yqga1 | 111 | a.100.1.10 (A:153-263) Pyrroline-5-carboxylate red | 2e-38 | |
| d2ahra1 | 104 | a.100.1.10 (A:153-256) Pyrroline-5-carboxylate red | 1e-36 | |
| d1yqga2 | 152 | c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductas | 1e-19 | |
| d2ahra2 | 152 | c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductas | 3e-16 | |
| d2b0ja2 | 242 | c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopt | 8e-10 | |
| d2i76a2 | 153 | c.2.1.6 (A:2-154) Hypothetical protein TM1727 {The | 6e-08 | |
| d1i36a2 | 152 | c.2.1.6 (A:1-152) Conserved hypothetical protein M | 3e-06 |
| >d1yqga1 a.100.1.10 (A:153-263) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} Length = 111 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: ProC C-terminal domain-like domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Score = 128 bits (323), Expect = 2e-38
Identities = 34/107 (31%), Positives = 56/107 (52%)
Query: 168 DEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGK 227
DE+ ITG+SGSGPAY+F ++AL + + G A L+ T GA ++ ++G+
Sbjct: 1 DEEKMHGITGISGSGPAYVFYLLDALQNAAIRQGFDMAEARALSLATFKGAVALAEQTGE 60
Query: 228 HPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 274
+L+ +V S GGTT + + + V A +RS+E+
Sbjct: 61 DFEKLQKNVTSKGGTTHEAVEAFRRHRVAEAISEGVCACVRRSQEME 107
|
| >d2ahra1 a.100.1.10 (A:153-256) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} Length = 104 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: ProC C-terminal domain-like domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Score = 123 bits (311), Expect = 1e-36
Identities = 47/104 (45%), Positives = 65/104 (62%)
Query: 170 KLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHP 229
K FD T L+GS PAYI+L IEALA GV G+P+ AL + +QTVL +AS + S + P
Sbjct: 1 KDFDTFTALAGSSPAYIYLFIEALAKAGVKNGIPKAKALEIVTQTVLASASNLKTSSQSP 60
Query: 230 GQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSREL 273
D + SPGGTTIAG+ ELE+ G + +A+ +++ L
Sbjct: 61 HDFIDAICSPGGTTIAGLMELERLGLTATVSSAIDKTIDKAKSL 104
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Score = 81.1 bits (199), Expect = 1e-19
Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 8/157 (5%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYS 72
+ F+G G MA ++A G+ K G RI + ++R+ E S +
Sbjct: 3 VYFLGGGNMAAAVAGGLVKQG---GYRI-YIANRGAEKRERLEKELGVETSATLPELHSD 58
Query: 73 DVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRF-IRVMPNTPS 131
DV++ +VKPQ ++ IR L++SVAAG+ + L + G +R +RVMPNTP
Sbjct: 59 DVLILAVKPQDMEAACKNIRT---NGALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPG 115
Query: 132 AVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRAD 168
+G + M +E D + ++ SVG D
Sbjct: 116 KIGLGVSGMYAEAEVSETDRRIADRIMKSVGLTVWLD 152
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Score = 72.0 bits (175), Expect = 3e-16
Identities = 37/158 (23%), Positives = 79/158 (50%), Gaps = 9/158 (5%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYS 72
+G IG GKMA +I KG+ ++ P + + S + ++ E + + + +++
Sbjct: 3 IGIIGVGKMASAIIKGLKQT----PHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQV 58
Query: 73 DVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHS-RFIRVMPNTPS 131
D+V+ +KPQ+ + V + K+ ++S+AAG+ L+ L + G +R+MPN +
Sbjct: 59 DLVILGIKPQLFETVLKPLHF----KQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNA 114
Query: 132 AVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADE 169
+ +++T ++ ++E + L S G + E
Sbjct: 115 QILQSSTALTGNALVSQELQARVRDLTDSFGSTFDISE 152
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Score = 55.4 bits (133), Expect = 8e-10
Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 5/113 (4%)
Query: 55 ESIGVKVLSDNNAVVEYSDVVVFSV-KPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDL 113
E +G+KV SD+ VE +D+V+ + K D+ + + ++ +
Sbjct: 125 EDVGLKVTSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACT-IPTTKF 183
Query: 114 QEWTGH--SRFIRVMPNTPSAVGEA-ATVMSLGGTATEEDGELIGKLFGSVGK 163
+ + + P V E V G A+EE + ++
Sbjct: 184 AKIFKDLGREDLNITSYHPGCVPEMKGQVYIAEGYASEEAVNKLYEIGKIARG 236
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Score = 48.8 bits (115), Expect = 6e-08
Identities = 22/162 (13%), Positives = 50/162 (30%), Gaps = 12/162 (7%)
Query: 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFESIGVKVLSDNNAVVE 70
+L F+G G + + + + + S ++ R + + E
Sbjct: 1 VLNFVGTGTLTRFFLECLKDRYEI------GYILSRSIDRARNLAEVYGGKAATLEKHPE 54
Query: 71 YSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNTP 130
+ VV V + +K VA + +LV + + + ++ S ++
Sbjct: 55 LNGVVFVIVPDRYIKTVANHLNL---GDAVLVHCSGFLSSEIFKKSGRASIHPNFSFSSL 111
Query: 131 SAVGEAATVMSLGGTATEEDGELIGKLFGSVGK--IWRADEK 170
E + G E ++ K+ + EK
Sbjct: 112 EKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKYFVIPSEK 153
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 43.7 bits (102), Expect = 3e-06
Identities = 22/137 (16%), Positives = 46/137 (33%), Gaps = 6/137 (4%)
Query: 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYS 72
+GFIG G++A+++A + GV + V V + V
Sbjct: 3 VGFIGFGEVAQTLASRLRSRGV-----EVVTSLEGRSPSTIERARTVGVTETSEEDVYSC 57
Query: 73 DVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEW-TGHSRFIRVMPNTPS 131
VV+ +V P V A + + + ++ + ++ + +
Sbjct: 58 PVVISAVTPGVALGAARRAGRHVRGIYVDINNISPETVRMASSLIEKGGFVDAAIMGSVR 117
Query: 132 AVGEAATVMSLGGTATE 148
G +++ G A E
Sbjct: 118 RKGADIRIIASGRDAEE 134
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 274 | |||
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.97 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.96 | |
| d1yqga1 | 111 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.92 | |
| d2ahra1 | 104 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.9 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.9 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.9 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.87 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 99.86 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.84 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.84 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 99.81 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 99.75 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 99.74 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 99.73 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 99.73 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.73 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 99.67 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 99.66 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 99.62 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 99.6 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 99.3 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 99.22 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 99.19 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 99.09 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 98.92 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 98.9 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 98.89 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 98.88 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 98.87 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.85 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.81 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 98.8 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 98.75 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 98.75 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 98.74 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 98.72 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 98.72 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 98.71 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 98.71 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 98.7 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 98.69 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 98.68 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 98.68 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 98.67 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 98.66 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 98.66 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 98.65 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 98.62 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 98.61 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 98.6 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 98.6 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 98.58 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 98.53 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 98.5 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 98.5 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 98.44 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 98.41 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 98.37 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 98.34 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 98.34 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 98.34 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 98.34 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 98.34 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 98.31 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 98.29 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 98.29 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 98.25 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 98.23 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 98.21 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 98.18 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 98.16 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 98.15 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 98.15 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 98.12 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 98.11 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 98.11 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 98.11 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 98.09 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 98.08 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 98.07 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 98.07 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 98.01 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 98.0 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 97.98 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 97.97 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 97.92 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 97.91 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 97.89 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 97.86 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 97.86 | |
| d2f1ka1 | 114 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 97.85 | |
| d2g5ca1 | 110 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 97.83 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 97.77 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 97.76 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.76 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 97.64 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.64 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 97.62 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 97.57 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.54 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.53 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 97.51 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.5 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 97.45 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 97.4 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.39 | |
| d2pv7a1 | 128 | Prephenate dehydrogenase TyrA {Haemophilus influen | 97.37 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 97.34 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.23 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 97.2 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 97.2 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.12 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.11 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 97.06 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.04 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.02 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 97.02 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 97.0 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 96.96 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 96.94 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 96.88 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.85 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.85 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 96.83 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 96.79 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.79 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.76 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 96.75 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 96.73 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 96.72 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 96.72 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.68 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 96.65 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.64 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 96.62 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 96.57 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 96.51 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 96.48 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 96.39 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 96.38 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 96.34 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 96.31 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 96.29 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 96.25 | |
| d1vpda1 | 133 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 96.23 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.22 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 96.2 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 96.2 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.17 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 96.17 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 96.11 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.1 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 96.08 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 96.07 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 96.04 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 96.01 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 95.99 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 95.99 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 95.97 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 95.96 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 95.95 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 95.94 | |
| d2cvza1 | 132 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 95.94 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 95.93 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 95.91 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 95.91 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 95.89 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 95.89 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 95.88 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.88 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 95.87 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 95.83 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 95.8 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 95.79 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 95.78 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 95.77 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 95.77 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 95.76 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 95.75 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 95.73 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 95.69 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 95.68 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 95.64 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 95.6 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 95.6 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 95.39 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 95.37 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 95.36 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 95.28 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 95.23 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 95.16 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 95.12 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 95.11 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 95.08 | |
| d3cuma1 | 134 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 95.08 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 95.05 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 95.03 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 95.02 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 94.97 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 94.97 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 94.94 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 94.94 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 94.87 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 94.85 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 94.82 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 94.75 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 94.72 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 94.65 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 94.57 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 94.53 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 94.51 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 94.51 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 94.5 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 94.5 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 94.49 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 94.44 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 94.44 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 94.38 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 94.32 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 94.32 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 94.31 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 94.25 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 94.21 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 94.18 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 94.16 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 94.15 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 94.14 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 94.07 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 94.01 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 93.97 | |
| d2nu7a1 | 119 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 93.94 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 93.94 | |
| d1oi7a1 | 121 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 93.93 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 93.92 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 93.91 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 93.89 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 93.86 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 93.84 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 93.82 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 93.79 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 93.77 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 93.75 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 93.66 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 93.58 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 93.45 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 93.43 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 93.4 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 93.34 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 93.31 | |
| d1w5fa1 | 194 | Cell-division protein FtsZ {Thermotoga maritima [T | 93.25 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 93.21 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 93.2 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 93.19 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 92.97 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 92.97 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 92.93 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 92.77 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 92.74 | |
| d1euca1 | 130 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 92.72 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 92.68 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 92.59 | |
| d2g82a1 | 168 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 92.53 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 92.52 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 92.5 | |
| d1ml4a2 | 157 | Aspartate carbamoyltransferase catalytic subunit { | 92.49 | |
| d2vapa1 | 209 | Cell-division protein FtsZ {Archaeon Methanococcus | 92.43 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 92.4 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 92.32 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 92.2 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 92.1 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 92.06 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 92.02 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 91.98 | |
| d2at2a2 | 151 | Aspartate carbamoyltransferase catalytic subunit { | 91.85 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 91.77 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 91.76 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 91.74 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 91.45 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 91.43 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 91.41 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 91.35 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 91.17 | |
| d2h1qa1 | 251 | Hypothetical protein Dhaf_3308 {Desulfitobacterium | 91.05 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 91.01 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 90.96 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 90.9 | |
| d1dlja3 | 108 | UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD | 90.78 | |
| d1pg5a2 | 153 | Aspartate carbamoyltransferase catalytic subunit { | 90.76 | |
| d1obfo1 | 173 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 90.73 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 90.65 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 90.56 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 90.41 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 90.37 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 90.3 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 90.29 | |
| d1duvg2 | 183 | Ornithine transcarbamoylase {Escherichia coli [Tax | 90.25 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 89.97 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 89.8 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 89.58 | |
| d1dssg1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 89.48 | |
| d2blna2 | 203 | Polymyxin resistance protein ArnA, N-terminal doma | 89.47 | |
| d1ekxa2 | 160 | Aspartate carbamoyltransferase catalytic subunit { | 89.42 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 89.29 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 89.22 | |
| d1pj3a1 | 294 | Mitochondrial NAD(P)-dependent malic enzyme {Human | 88.83 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 88.71 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 88.61 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 88.57 | |
| d1q7ra_ | 202 | Hypothetical protein YaaE {Bacillus stearothermoph | 88.56 | |
| d1l7da2 | 194 | Nicotinamide nucleotide transhydrogenase dI compon | 88.48 | |
| d1rq2a1 | 198 | Cell-division protein FtsZ {Mycobacterium tubercul | 88.44 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 88.42 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 88.35 | |
| d1ebfa1 | 168 | Homoserine dehydrogenase {Baker's yeast (Saccharom | 88.33 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 88.24 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 87.95 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 87.92 | |
| d1rm4a1 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 87.91 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 87.74 | |
| d1k3ta1 | 190 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 87.66 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 87.62 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 87.5 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 87.39 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 87.37 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 86.95 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 86.9 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 86.63 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 86.57 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 86.56 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 86.47 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 86.0 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 85.92 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 85.77 | |
| d1u8fo1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 85.63 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 85.21 | |
| d1hdgo1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 84.98 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 84.84 | |
| d1ofua1 | 198 | Cell-division protein FtsZ {Pseudomonas aeruginosa | 84.75 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 84.56 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 84.54 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 84.35 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 84.15 | |
| d1gq2a1 | 298 | Mitochondrial NAD(P)-dependent malic enzyme {Domes | 83.9 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 83.85 | |
| d2bw0a2 | 203 | 10-formyltetrahydrofolate dehydrogenase domain 1 { | 83.53 | |
| d1vkza2 | 90 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 83.31 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 83.27 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 83.05 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 82.78 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 82.62 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 82.18 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 82.12 | |
| d1otha2 | 170 | Ornithine transcarbamoylase {Human (Homo sapiens) | 82.11 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 81.88 | |
| d2b4ro1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 81.82 | |
| d1fmta2 | 206 | Methionyl-tRNAfmet formyltransferase {Escherichia | 81.76 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 81.75 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 81.57 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 81.33 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 80.89 | |
| d1pjca2 | 193 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 80.83 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 80.83 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 80.76 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 80.68 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 80.46 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 80.28 | |
| d1gado1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 80.26 |
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.97 E-value=1.4e-30 Score=200.32 Aligned_cols=150 Identities=25% Similarity=0.461 Sum_probs=137.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCcccHHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAM 89 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~~ 89 (274)
|||||||+|+||++|+++|.++|+ ++++| +|++++.+++.+ .|+....++.++++++|+||+||||++++++++
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~~----~i~v~-~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavkp~~~~~vl~ 75 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTPH----ELIIS-GSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIKPQLFETVLK 75 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSC----EEEEE-CSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSCGGGHHHHHT
T ss_pred CEEEEEeccHHHHHHHHHHHhCCC----eEEEE-cChHHhHHhhccccceeeechhhhhhhccceeeeecchHhHHHHhh
Confidence 699999999999999999999998 99999 999999988865 788888899999999999999999999999886
Q ss_pred HhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCCeEEcC
Q 024016 90 QIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRAD 168 (274)
Q Consensus 90 ~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~~~~~ 168 (274)
+ +++++++||+.+|++++.+++.++ +.+++|.|||.|..+++|.+.++.+...+++..+.++++|+.+|.+++++
T Consensus 76 ~----l~~~~~iis~~agi~~~~l~~~l~~~~~ivr~mPN~~~~v~~g~~~~~~~~~~~~~~~~~v~~l~~~~G~~~~v~ 151 (152)
T d2ahra2 76 P----LHFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVSQELQARVRDLTDSFGSTFDIS 151 (152)
T ss_dssp T----SCCCSCEEECCTTCCHHHHHHHHCTTSCEEEEECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHHHTTEEEEECC
T ss_pred h----cccceeEecccccccHHHHHhhhcccccchhhccchhhhcCccceEEEeCCCCCHHHHHHHHHHHHhCCCEEEec
Confidence 5 457889999999999999999887 57899999999999999999998888888999999999999999987776
Q ss_pred c
Q 024016 169 E 169 (274)
Q Consensus 169 e 169 (274)
|
T Consensus 152 E 152 (152)
T d2ahra2 152 E 152 (152)
T ss_dssp G
T ss_pred C
Confidence 4
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.96 E-value=3.7e-29 Score=192.49 Aligned_cols=148 Identities=32% Similarity=0.538 Sum_probs=133.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCC-CCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCcccHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSG-VLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g-~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~ 88 (274)
|||||||+|+||++|+++|+++| + +|++| +|++++.+.+.+ .|+...++..+ +.++|+||+||||+++++++
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~~~----~i~v~-~r~~~~~~~l~~~~~~~~~~~~~~-v~~~Div~lavkP~~~~~v~ 74 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQGGY----RIYIA-NRGAEKRERLEKELGVETSATLPE-LHSDDVLILAVKPQDMEAAC 74 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSC----EEEEE-CSSHHHHHHHHHHTCCEEESSCCC-CCTTSEEEECSCHHHHHHHH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCC----cEEEE-eCChhHHHHhhhhccccccccccc-ccccceEEEecCHHHHHHhH
Confidence 69999999999999999999988 5 99999 999999999887 68888776655 67899999999999999999
Q ss_pred HHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCCeEEc
Q 024016 89 MQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRA 167 (274)
Q Consensus 89 ~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~~~~ 167 (274)
+++.+ .++++||+.+|++.+.+++.++ ..+++|.||++|..+++|.+.++.+...+++..+.++++|+.+|+++++
T Consensus 75 ~~l~~---~~~~viS~~ag~~~~~l~~~l~~~~~iir~mpn~p~~~~~g~t~~~~~~~~~~~~~~~v~~l~~~~G~~~~v 151 (152)
T d1yqga2 75 KNIRT---NGALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEAEVSETDRRIADRIMKSVGLTVWL 151 (152)
T ss_dssp TTCCC---TTCEEEECCTTCCHHHHHHHTTSCCCEEEEECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHHHTTEEEEEC
T ss_pred HHHhh---cccEEeecccCCCHHHHHHHhCcCcceEeecccchhHhcCCcEEEEeCCCCCHHHHHHHHHHHHhCCCEEEe
Confidence 88763 4689999999999999999997 4679999999999999999999988888899999999999999988654
|
| >d1yqga1 a.100.1.10 (A:153-263) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: ProC C-terminal domain-like domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.92 E-value=1.3e-24 Score=156.02 Aligned_cols=107 Identities=32% Similarity=0.556 Sum_probs=104.2
Q ss_pred CccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHHH
Q 024016 168 DEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 247 (274)
Q Consensus 168 ~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~l 247 (274)
+|+++|.+++++||||+|++.+++++.+++++.|++++++++++.+++.|+..++.+++.+|..+++.|+||||+|++||
T Consensus 1 dE~~~d~~Tal~GSGPAy~~~~~ea~~~~~~~~Gl~~~~a~~lv~~~~~Gs~~ll~~s~~~~~~L~~~V~SpgGtT~agl 80 (111)
T d1yqga1 1 DEEKMHGITGISGSGPAYVFYLLDALQNAAIRQGFDMAEARALSLATFKGAVALAEQTGEDFEKLQKNVTSKGGTTHEAV 80 (111)
T ss_dssp STTHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTCCTTSHHHHHH
T ss_pred CHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHhcccCcchhHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHhhcC
Q 024016 248 HELEKSGFRGILMNAVVAAAKRSRELS 274 (274)
Q Consensus 248 ~~l~~~~~~~~~~~a~~~~~~r~~~~~ 274 (274)
+.|++++++..+.++++++++|++||+
T Consensus 81 ~~l~~~~~~~~i~~ai~aA~~Rs~el~ 107 (111)
T d1yqga1 81 EAFRRHRVAEAISEGVCACVRRSQEME 107 (111)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999985
|
| >d2ahra1 a.100.1.10 (A:153-256) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: ProC C-terminal domain-like domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.90 E-value=1.7e-23 Score=148.48 Aligned_cols=104 Identities=45% Similarity=0.729 Sum_probs=101.1
Q ss_pred cchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHHHHH
Q 024016 170 KLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHE 249 (274)
Q Consensus 170 ~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~l~~ 249 (274)
.++|.+|+++||||+|++.+++++.+++++.|++++++++++.+++.|+..++.+++.+|..+++.|+||||+|++||+.
T Consensus 1 K~~d~~TalsGSGPAf~~~~~ea~~~~~~~~Gl~~~~a~~l~~~t~~gs~~ll~~~~~~p~~l~~~V~SpgGtT~agl~~ 80 (104)
T d2ahra1 1 KDFDTFTALAGSSPAYIYLFIEALAKAGVKNGIPKAKALEIVTQTVLASASNLKTSSQSPHDFIDAICSPGGTTIAGLME 80 (104)
T ss_dssp GGHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHCCTTSHHHHHHHH
T ss_pred CCcchHhHhccChHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhccCCChhHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHHHHHHHHHHhhc
Q 024016 250 LEKSGFRGILMNAVVAAAKRSREL 273 (274)
Q Consensus 250 l~~~~~~~~~~~a~~~~~~r~~~~ 273 (274)
|++.+++..+.++++++++|++||
T Consensus 81 le~~~~~~~i~~a~~aA~~Rs~el 104 (104)
T d2ahra1 81 LERLGLTATVSSAIDKTIDKAKSL 104 (104)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHC
T ss_pred HHHCChHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999997
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.90 E-value=7.3e-24 Score=164.10 Aligned_cols=148 Identities=18% Similarity=0.222 Sum_probs=116.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccHHHHH-
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVKDVA- 88 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~~v~- 88 (274)
|||||||+|+||.+||++|+++|| +|++| ||++++.+.+.+.+.....++.++++++|+||+||| ++++++++
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~G~----~V~~~-d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~ 75 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKAGY----SLVVS-DRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVAL 75 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHH
T ss_pred CEEEEEehhHHHHHHHHHHHHCCC----eEEEE-eCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHh
Confidence 699999999999999999999999 99999 999999999999999999999999999999999997 66788887
Q ss_pred --HHhccccCCCCEEEEecCCCCHHH---HHHhhC--CCceEEEc-CCcHHhhcCCc-eEEecCCCCCHHHHHHHHHHhh
Q 024016 89 --MQIRPLLSRKKLLVSVAAGVKLKD---LQEWTG--HSRFIRVM-PNTPSAVGEAA-TVMSLGGTATEEDGELIGKLFG 159 (274)
Q Consensus 89 --~~i~~~l~~~~~vis~~~g~~~~~---l~~~~~--~~~~~~~~-p~~~~~~~~g~-~~i~~~~~~~~~~~~~v~~ll~ 159 (274)
..+.+.+++++++|++++ +.++. +.+.+. +..++... ...|.....|. +.++.| +++.+++++++|+
T Consensus 76 ~~~~~~~~~~~g~iiid~sT-~~p~~~~~~~~~~~~~g~~~vdapv~gg~~~a~~g~l~~~~gG---~~~~~~~~~~il~ 151 (161)
T d1vpda2 76 GENGIIEGAKPGTVLIDMSS-IAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGG---DKAIFDKYYDLMK 151 (161)
T ss_dssp STTCHHHHCCTTCEEEECSC-CCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEEES---CHHHHHHHHHHHH
T ss_pred CCcchhhccCCCCEEEECCC-CCHHHHHHHHHHHHHcCCceecccccCChhHHhcCCeEEEEcC---CHHHHHHHHHHHH
Confidence 457778889999998754 45543 333332 34455432 23455555555 444544 6899999999999
Q ss_pred hcCCe-EEc
Q 024016 160 SVGKI-WRA 167 (274)
Q Consensus 160 ~~g~~-~~~ 167 (274)
.+|.. +++
T Consensus 152 ~~~~~i~~~ 160 (161)
T d1vpda2 152 AMAGSVVHT 160 (161)
T ss_dssp TTEEEEEEE
T ss_pred HhcCceEEC
Confidence 99964 664
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.90 E-value=7.5e-23 Score=159.02 Aligned_cols=147 Identities=14% Similarity=0.186 Sum_probs=115.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCc-eeccCchhhccCCCEEEEeeCcccHHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV-KVLSDNNAVVEYSDVVVFSVKPQVVKDVAM 89 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~-~~~~~~~~~~~~aDiIil~v~~~~~~~v~~ 89 (274)
|||||||+|+||++||++|.++|| +|++| ||++++.+++.+.|. ....+..+.+++||+||+|+|++.++++++
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~----~V~~~-d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~~~~~~vl~ 75 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGH----YLIGV-SRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPIQLILPTLE 75 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCHHHHHHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCC----EEEEE-ECCchHHHHHHHhhccceeeeecccccccccccccCcHhhhhhhhh
Confidence 799999999999999999999999 99999 999999998888774 334556678899999999999999999999
Q ss_pred HhccccCCCCEEEEecCCCCHHH---HHHhhCCCceEEEcCCcH------Hh-----hcCCceEEecCCCCCHHHHHHHH
Q 024016 90 QIRPLLSRKKLLVSVAAGVKLKD---LQEWTGHSRFIRVMPNTP------SA-----VGEAATVMSLGGTATEEDGELIG 155 (274)
Q Consensus 90 ~i~~~l~~~~~vis~~~g~~~~~---l~~~~~~~~~~~~~p~~~------~~-----~~~g~~~i~~~~~~~~~~~~~v~ 155 (274)
++.+.++++++|+++. ++.... +.+..+ +++..||... .. ......++++....++++++.++
T Consensus 76 ~l~~~l~~~~iv~~~~-s~~~~~~~~~~~~~~--~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~~~~~~~v~ 152 (165)
T d2f1ka2 76 KLIPHLSPTAIVTDVA-SVKTAIAEPASQLWS--GFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLR 152 (165)
T ss_dssp HHGGGSCTTCEEEECC-SCCHHHHHHHHHHST--TCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHHHH
T ss_pred hhhhhcccccceeecc-ccchHHHHHHHHhhc--ccccceeeecccccchhhhcccccCCCeEEEEeCCCCCHHHHHHHH
Confidence 9999999999888774 444433 233333 4556665432 11 12233456666777899999999
Q ss_pred HHhhhcCCeE
Q 024016 156 KLFGSVGKIW 165 (274)
Q Consensus 156 ~ll~~~g~~~ 165 (274)
++|+.+|..+
T Consensus 153 ~l~~~lG~~v 162 (165)
T d2f1ka2 153 SVLEPLGVKI 162 (165)
T ss_dssp HHHGGGTCEE
T ss_pred HHHHHhCCEE
Confidence 9999999653
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.87 E-value=8.4e-22 Score=152.47 Aligned_cols=149 Identities=16% Similarity=0.239 Sum_probs=115.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcc-cHHHHH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQ-VVKDVA 88 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~-~~~~v~ 88 (274)
|+||||||+|+||++||++|.++|| +|.+| ||++++.+.+.+.+.....++.+.+..+|+|++|+++. +.++++
T Consensus 1 M~kIg~IGlG~MG~~iA~~L~~~g~----~v~~~-d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~ 75 (162)
T d3cuma2 1 MKQIAFIGLGHMGAPMATNLLKAGY----LLNVF-DLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLY 75 (162)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTC----EEEEE-CSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHH
T ss_pred CCEEEEEEEHHHHHHHHHHHHHCCC----eEEEE-ECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHH
Confidence 3589999999999999999999999 99999 99999999999999888889999999999999999854 567776
Q ss_pred HH---hccccCCCCEEEEecCCCCHHH---HHHhhC--CCceEEE-cCCcHHhhcCCceE-EecCCCCCHHHHHHHHHHh
Q 024016 89 MQ---IRPLLSRKKLLVSVAAGVKLKD---LQEWTG--HSRFIRV-MPNTPSAVGEAATV-MSLGGTATEEDGELIGKLF 158 (274)
Q Consensus 89 ~~---i~~~l~~~~~vis~~~g~~~~~---l~~~~~--~~~~~~~-~p~~~~~~~~g~~~-i~~~~~~~~~~~~~v~~ll 158 (274)
.. +.+.+.+++++|++++ +.++. +.+.+. +..++.+ +...|.....|... +..| +++.+++++++|
T Consensus 76 ~~~~~~~~~l~~g~iiid~st-~~p~~~~~~~~~~~~~gi~~~dapv~Gg~~~a~~G~l~~~~gG---~~~~~~~~~~il 151 (162)
T d3cuma2 76 LDDDGLLAHIAPGTLVLECST-IAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVGG---DAEALEKARPLF 151 (162)
T ss_dssp HSTTCHHHHSCTTCEEEECSC-CCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEEEES---CHHHHHHHHHHH
T ss_pred hccccccccCCCCCEEEECCC-CCHHHHHHHHHHHHHCCCcEEecccccCccccccCCeEEEecC---CHHHHHHHHHHH
Confidence 54 5667889999998744 55543 333342 3445543 22346666667644 4444 789999999999
Q ss_pred hhcCCe-EEc
Q 024016 159 GSVGKI-WRA 167 (274)
Q Consensus 159 ~~~g~~-~~~ 167 (274)
+.+|.. +++
T Consensus 152 ~~~~~~v~~~ 161 (162)
T d3cuma2 152 EAMGRNIFHA 161 (162)
T ss_dssp HHHEEEEEEE
T ss_pred HHHcCccEEC
Confidence 999964 664
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=99.86 E-value=6.7e-23 Score=157.31 Aligned_cols=147 Identities=12% Similarity=0.090 Sum_probs=103.1
Q ss_pred EEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHHHHHhc
Q 024016 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAMQIR 92 (274)
Q Consensus 13 IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~~~i~ 92 (274)
|||||+|+||++|+++|.+.++ .+.+| +|++++++++.+.+...+.++.++++.+|+||+||||+++.+++.++.
T Consensus 2 IgfIG~G~mg~~l~~~L~~~~~----~~~v~-~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d~~i~~v~~~l~ 76 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDRYE----IGYIL-SRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDRYIKTVANHLN 76 (153)
T ss_dssp CEEESCCHHHHHHHHTTC--------CCCEE-CSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTTTHHHHHTTTC
T ss_pred EEEEeCcHHHHHHHHHHHhCCC----EEEEE-eCChhhhcchhhcccccccchhhhhccCcEEEEeccchhhhHHHhhhc
Confidence 7999999999999999866544 44689 999999999998665556788899999999999999999999998874
Q ss_pred cccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhh--cCCceEEecCCCCCHHHHHHHHHHhhhcCC-eEEcC
Q 024016 93 PLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAV--GEAATVMSLGGTATEEDGELIGKLFGSVGK-IWRAD 168 (274)
Q Consensus 93 ~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~--~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~-~~~~~ 168 (274)
.+++++||++++.+.+.++.... ..+.++.+++.+... ..+......+ +++.++.++++|+.+|. +++++
T Consensus 77 ---~~~~ivi~~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---d~~~~~~~~~l~~~lG~~~~~i~ 150 (153)
T d2i76a2 77 ---LGDAVLVHCSGFLSSEIFKKSGRASIHPNFSFSSLEKALEMKDQIVFGLEG---DERGLPIVKKIAEEISGKYFVIP 150 (153)
T ss_dssp ---CSSCCEEECCSSSCGGGGCSSSEEEEEECSCC--CTTGGGCGGGCCEEECC---CTTTHHHHHHHHHHHCSCEEECC
T ss_pred ---ccceeeeecccchhhhhhhhhccccceeeeecccccchhhhccCcEEEEeC---CHHHHHHHHHHHHHHCCcEEEeC
Confidence 47899999999888777654332 111122222221111 1222333332 67889999999999995 68887
Q ss_pred cc
Q 024016 169 EK 170 (274)
Q Consensus 169 e~ 170 (274)
++
T Consensus 151 ~e 152 (153)
T d2i76a2 151 SE 152 (153)
T ss_dssp GG
T ss_pred CC
Confidence 65
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.84 E-value=2e-20 Score=145.90 Aligned_cols=150 Identities=18% Similarity=0.245 Sum_probs=114.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCc--eeccCchhh-ccCCCEEEEeeCcccHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV--KVLSDNNAV-VEYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~--~~~~~~~~~-~~~aDiIil~v~~~~~~~v 87 (274)
+||+|||+|.||++||++|.++|+ ..+|++| ||+++..+.+.+.+. ...++..+. ..++|+||+|+|++.+.++
T Consensus 2 k~I~IIG~G~mG~sla~~L~~~g~--~~~I~~~-D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~~~~~~v 78 (171)
T d2g5ca2 2 QNVLIVGVGFMGGSFAKSLRRSGF--KGKIYGY-DINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREI 78 (171)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTC--CSEEEEE-CSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHHHHHHH
T ss_pred CEEEEEccCHHHHHHHHHHHhcCC--CeEEEEE-ECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCchhhhhh
Confidence 479999999999999999999996 2368899 999999998888765 233444333 3479999999999999999
Q ss_pred HHHhccccCCCCEEEEecCCCC--HHHHHHhhCCCceEEEcCCc------HHh-----hcCCceEEecCCCCCHHHHHHH
Q 024016 88 AMQIRPLLSRKKLLVSVAAGVK--LKDLQEWTGHSRFIRVMPNT------PSA-----VGEAATVMSLGGTATEEDGELI 154 (274)
Q Consensus 88 ~~~i~~~l~~~~~vis~~~g~~--~~~l~~~~~~~~~~~~~p~~------~~~-----~~~g~~~i~~~~~~~~~~~~~v 154 (274)
+.++.++++++++++++++... .+.+.+.++ .+++..||.. +.. +.....++++....+++.++.+
T Consensus 79 l~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~-~~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~~~~~~~~~v 157 (171)
T d2g5ca2 79 AKKLSYILSEDATVTDQGSVKGKLVYDLENILG-KRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKLV 157 (171)
T ss_dssp HHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHG-GGEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCHHHHHHH
T ss_pred hhhhhccccccccccccccccHHHHHHHHHhhc-ccccccccccccccccHHHHHHHhhCCCeEEEecCCCCCHHHHHHH
Confidence 9999999999988888765433 245555555 3677777732 211 1223456777777889999999
Q ss_pred HHHhhhcCCe
Q 024016 155 GKLFGSVGKI 164 (274)
Q Consensus 155 ~~ll~~~g~~ 164 (274)
+++|+.+|..
T Consensus 158 ~~~~~~lG~~ 167 (171)
T d2g5ca2 158 KRVWEDVGGV 167 (171)
T ss_dssp HHHHHHTTCE
T ss_pred HHHHHHcCCE
Confidence 9999999965
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.84 E-value=6.1e-21 Score=149.60 Aligned_cols=147 Identities=15% Similarity=0.234 Sum_probs=111.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCc--------eeccCchhhccCCCEEEEeeCc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV--------KVLSDNNAVVEYSDVVVFSVKP 81 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~--------~~~~~~~~~~~~aDiIil~v~~ 81 (274)
+.+|||||+|+||.+||++|+++|| +|++| ||++++.+.+.+.+. ....++.+.+..+|++++++++
T Consensus 2 ~~nIg~IGlG~MG~~mA~~L~~~G~----~V~v~-dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~ 76 (176)
T d2pgda2 2 QADIALIGLAVMGQNLILNMNDHGF----VVCAF-NRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKA 76 (176)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCT
T ss_pred CCcEEEEeEhHHHHHHHHHHHHCCC----eEEEE-cCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCc
Confidence 3579999999999999999999999 99999 999999999987432 2234556778899999999974
Q ss_pred -ccHHHHHHHhccccCCCCEEEEecCCCCHHH---HHHhhC--CCceEEE-cCCcHHhhcCCceEEecCCCCCHHHHHHH
Q 024016 82 -QVVKDVAMQIRPLLSRKKLLVSVAAGVKLKD---LQEWTG--HSRFIRV-MPNTPSAVGEAATVMSLGGTATEEDGELI 154 (274)
Q Consensus 82 -~~~~~v~~~i~~~l~~~~~vis~~~g~~~~~---l~~~~~--~~~~~~~-~p~~~~~~~~g~~~i~~~~~~~~~~~~~v 154 (274)
+.+.+++.++.+.+++++++|++++ +.++. +.+.+. +..++.. +...|.....|.+++..| +++.++++
T Consensus 77 ~~~v~~v~~~l~~~~~~g~iiid~sT-~~~~~~~~~~~~~~~~g~~~ldapvsGg~~~A~~G~~~~~gG---~~~~~~~~ 152 (176)
T d2pgda2 77 GQAVDNFIEKLVPLLDIGDIIIDGGN-SEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGPSLMPGG---NKEAWPHI 152 (176)
T ss_dssp THHHHHHHHHHHHHCCTTCEEEECSC-CCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEEE---CTTTHHHH
T ss_pred hHHHHHHHHHHHhccccCcEEEecCc-chhHHHHHHHHHHHhcCCceeccccccCcccccCCcEEEcCC---CHHHHHHH
Confidence 5788999999999999999998754 44433 333332 3444432 334555555676666655 67899999
Q ss_pred HHHhhhcCCeE
Q 024016 155 GKLFGSVGKIW 165 (274)
Q Consensus 155 ~~ll~~~g~~~ 165 (274)
+++|+.++..+
T Consensus 153 ~~il~~~~~kv 163 (176)
T d2pgda2 153 KAIFQGIAAKV 163 (176)
T ss_dssp HHHHHHHSCBC
T ss_pred HHHHHHHhccc
Confidence 99999998653
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.81 E-value=5.1e-20 Score=140.81 Aligned_cols=146 Identities=17% Similarity=0.217 Sum_probs=106.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAMQ 90 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~~~ 90 (274)
|||||||+|+||++|+++|.++|| +|++| ++++++...+...+..+..++.|+++++|+||+|||+++..+++.+
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g~----~v~~~-~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~~~~~~~~ 75 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRGV----EVVTS-LEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVALGAARR 75 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTC----EEEEC-CTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGHHHHHHH
T ss_pred CEEEEEcHHHHHHHHHHHHHHCCC----eEEEE-cCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCchHHHHHHh
Confidence 699999999999999999999999 99999 8887766666655555567889999999999999999998888888
Q ss_pred hccccCCCCEEEEecCCCCH---HHHHHhhCCCceEEEc-CCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCCe-E
Q 024016 91 IRPLLSRKKLLVSVAAGVKL---KDLQEWTGHSRFIRVM-PNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI-W 165 (274)
Q Consensus 91 i~~~l~~~~~vis~~~g~~~---~~l~~~~~~~~~~~~~-p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~-~ 165 (274)
+.+.+ ++++|+++ ++.+ ..+++.++...++... ...|...+.+...++.|+ +.+.++ .|+.+|.. .
T Consensus 76 ~~~~~--~~~~id~s-t~~p~~~~~l~~~~~~~~~~d~~v~g~~~~~~~~~~~~~~G~--~~~~~~----~l~~~g~~i~ 146 (152)
T d1i36a2 76 AGRHV--RGIYVDIN-NISPETVRMASSLIEKGGFVDAAIMGSVRRKGADIRIIASGR--DAEEFM----KLNRYGLNIE 146 (152)
T ss_dssp HHTTC--CSEEEECS-CCCHHHHHHHHHHCSSSEEEEEEECSCHHHHGGGCEEEEEST--THHHHH----GGGGGTCEEE
T ss_pred hcccC--CceeeccC-cCCHHHHHHHHHHHhccCCCcccccCCcccccCCcEEEEECC--CHHHHH----HHHHcCCeee
Confidence 77654 56788764 3443 4566666644444332 233445566777777664 334333 37888865 6
Q ss_pred EcCcc
Q 024016 166 RADEK 170 (274)
Q Consensus 166 ~~~e~ 170 (274)
+++++
T Consensus 147 ~~G~~ 151 (152)
T d1i36a2 147 VRGRE 151 (152)
T ss_dssp ECSSS
T ss_pred EcCCC
Confidence 67654
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.75 E-value=6.3e-18 Score=132.39 Aligned_cols=145 Identities=14% Similarity=0.241 Sum_probs=106.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce--------eccC---chhhccCCCEEEEee
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK--------VLSD---NNAVVEYSDVVVFSV 79 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~--------~~~~---~~~~~~~aDiIil~v 79 (274)
|||||||+|+||.+|+++|+++|| +|++| ||++++.+.+.+.+.. ...+ ....+..++.+++++
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G~----~V~~~-dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKGF----KVAVF-NRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILV 76 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECC
T ss_pred CEEEEEeehHHHHHHHHHHHHCCC----eEEEE-ECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEee
Confidence 689999999999999999999999 99999 9999999999874432 1111 122355778888888
Q ss_pred Cc-ccHHHHHHHhccccCCCCEEEEecCCCCHH---HHHHhhC--CCceEEE-cCCcHHhhcCCceEEecCCCCCHHHHH
Q 024016 80 KP-QVVKDVAMQIRPLLSRKKLLVSVAAGVKLK---DLQEWTG--HSRFIRV-MPNTPSAVGEAATVMSLGGTATEEDGE 152 (274)
Q Consensus 80 ~~-~~~~~v~~~i~~~l~~~~~vis~~~g~~~~---~l~~~~~--~~~~~~~-~p~~~~~~~~g~~~i~~~~~~~~~~~~ 152 (274)
++ ..+..++.++...+.++++++++++ ..++ .+.+.+. +..++.. +...|.....|.+.++.| +++.++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~iii~~st-~~~~~~~~~~~~l~~~~~~~ldapv~g~~~~a~~g~~~mvgG---~~~~~~ 152 (178)
T d1pgja2 77 QAGAATDSTIEQLKKVFEKGDILVDTGN-AHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGPAFFPGG---TLSVWE 152 (178)
T ss_dssp CCSHHHHHHHHHHHHHCCTTCEEEECCC-CCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCCEEEEEE---CHHHHH
T ss_pred cCcchhhhhhhhhhhhccccceecccCc-cchhHHHHHHHHHhhcceeEecccccCCcchhcCCcEEEeeC---CHHHHH
Confidence 65 4577888888888899999998754 3433 3344442 3344432 334455556676666555 789999
Q ss_pred HHHHHhhhcCCe
Q 024016 153 LIGKLFGSVGKI 164 (274)
Q Consensus 153 ~v~~ll~~~g~~ 164 (274)
+++++|+.++..
T Consensus 153 ~v~pil~~~~~~ 164 (178)
T d1pgja2 153 EIRPIVEAAAAK 164 (178)
T ss_dssp HHHHHHHHHSCB
T ss_pred HHHHHHHHHhcc
Confidence 999999999965
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=99.74 E-value=7.7e-18 Score=132.84 Aligned_cols=151 Identities=12% Similarity=0.167 Sum_probs=115.6
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc--------------CceeccCchhhccCC
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--------------GVKVLSDNNAVVEYS 72 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~--------------g~~~~~~~~~~~~~a 72 (274)
.|.+.||+|||+|+||+++|..|.++|| +|++| .|+++.++.+.+. .+.+.++..++++++
T Consensus 4 ~~~m~KI~ViGaG~wGtAlA~~La~~g~----~V~l~-~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~a 78 (189)
T d1n1ea2 4 LLYLNKAVVFGSGAFGTALAMVLSKKCR----EVCVW-HMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGA 78 (189)
T ss_dssp CCCEEEEEEECCSHHHHHHHHHHHTTEE----EEEEE-CSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTC
T ss_pred cceeceEEEECCCHHHHHHHHHHHHcCC----eEEEE-EecHHHHHHHhhcccccccccccccccccccchhhhhccCCC
Confidence 3456789999999999999999999999 99999 9999998887651 244566778889999
Q ss_pred CEEEEeeCcccHHHHHHHhccc-----cCCCCEEEEecCCCCHH-------HHHHhhCCCce-EEEcCCcHHhhcCCc-e
Q 024016 73 DVVVFSVKPQVVKDVAMQIRPL-----LSRKKLLVSVAAGVKLK-------DLQEWTGHSRF-IRVMPNTPSAVGEAA-T 138 (274)
Q Consensus 73 DiIil~v~~~~~~~v~~~i~~~-----l~~~~~vis~~~g~~~~-------~l~~~~~~~~~-~~~~p~~~~~~~~g~-~ 138 (274)
|+||+|||.+.++++++++.+. ++++..++++++|+..+ .+.+.++...+ +-..|+.+.++.+|. +
T Consensus 79 d~iiiavPs~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e~~~~~~~~vlsGP~~A~Ev~~~~pt 158 (189)
T d1n1ea2 79 EIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVATGVFT 158 (189)
T ss_dssp SCEEECSCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHHHHTTCCE
T ss_pred CEEEEcCcHHHHHHHHHHHHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHHHhcccceEEEecCCcHHHHHcCCCc
Confidence 9999999999999999988753 35677899999988633 34444553332 334688888877764 4
Q ss_pred EEecCCCCCHHHHHHHHHHhhhcCC
Q 024016 139 VMSLGGTATEEDGELIGKLFGSVGK 163 (274)
Q Consensus 139 ~i~~~~~~~~~~~~~v~~ll~~~g~ 163 (274)
.++.+ +.+.+..+.++++|+.-..
T Consensus 159 ~~viA-s~~~~~a~~i~~lfst~~~ 182 (189)
T d1n1ea2 159 CVSIA-SADINVARRLQRIMSTGDR 182 (189)
T ss_dssp EEEEE-CSSHHHHHHHHHHHSCTTS
T ss_pred EEEEE-eCCHHHHHHHHHHhCCCCC
Confidence 44332 2378888999999986443
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=99.73 E-value=2.2e-17 Score=125.93 Aligned_cols=135 Identities=19% Similarity=0.212 Sum_probs=103.1
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHH
Q 024016 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 9 ~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v 87 (274)
+++||+||| +|+||++|+++|.++|| +|++| ||++.... .+.++++|++++++|+.++.++
T Consensus 8 ~~~kI~iIGg~G~mG~~la~~L~~~G~----~V~~~-d~~~~~~~-------------~~~~~~~~~v~~~~~~~~~~~v 69 (152)
T d2pv7a2 8 DIHKIVIVGGYGKLGGLFARYLRASGY----PISIL-DREDWAVA-------------ESILANADVVIVSVPINLTLET 69 (152)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTC----CEEEE-CTTCGGGH-------------HHHHTTCSEEEECSCGGGHHHH
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcCC----CcEec-cccccccc-------------chhhhhccccccccchhhheee
Confidence 457999999 99999999999999999 99999 99875432 3456789999999999999999
Q ss_pred HHHhccccCCCCEEEEecCCCCHHH---HHHhhCCCceEEEcCCc-HHhhc-CCceE-EecCCCCCHHHHHHHHHHhhhc
Q 024016 88 AMQIRPLLSRKKLLVSVAAGVKLKD---LQEWTGHSRFIRVMPNT-PSAVG-EAATV-MSLGGTATEEDGELIGKLFGSV 161 (274)
Q Consensus 88 ~~~i~~~l~~~~~vis~~~g~~~~~---l~~~~~~~~~~~~~p~~-~~~~~-~g~~~-i~~~~~~~~~~~~~v~~ll~~~ 161 (274)
+.++.+.+++++++++++ +++.+. +.+.++ .+++..||.. |...+ .|... ++.+ .+++.++++.++|+.+
T Consensus 70 ~~~~~~~~~~~~iiiD~~-Svk~~~~~~~~~~~~-~~~v~~hP~~Gp~~~~~~g~~~v~~~g--~~~~~~~~~~~ll~~~ 145 (152)
T d2pv7a2 70 IERLKPYLTENMLLADLT-SVKREPLAKMLEVHT-GAVLGLHPMFGADIASMAKQVVVRCDG--RFPERYEWLLEQIQIW 145 (152)
T ss_dssp HHHHGGGCCTTSEEEECC-SCCHHHHHHHHHHCS-SEEEEEEECSCTTCSCCTTCEEEEEEE--ECGGGTHHHHHHHHHT
T ss_pred eecccccccCCceEEEec-ccCHHHHHHHHHHcc-CCEEEecccCCCcccccCCcEEEEecC--CCHHHHHHHHHHHHHh
Confidence 999999999999999874 456543 334443 4677778764 22222 34443 3434 3577899999999999
Q ss_pred CCeE
Q 024016 162 GKIW 165 (274)
Q Consensus 162 g~~~ 165 (274)
|..+
T Consensus 146 Ga~v 149 (152)
T d2pv7a2 146 GAKI 149 (152)
T ss_dssp TCEE
T ss_pred CCEE
Confidence 9653
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=1.2e-16 Score=126.17 Aligned_cols=155 Identities=15% Similarity=0.172 Sum_probs=124.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----------c------------------C
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------I------------------G 58 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-----------~------------------g 58 (274)
|..+||+|||+|.||+.||..+..+|| +|++| |++++..+...+ . .
T Consensus 2 ~~IkkvaViGaG~mG~~iA~~~a~~G~----~V~l~-D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 76 (192)
T d1f0ya2 2 IIVKHVTVIGGGLMGAGIAQVAAATGH----TVVLV-DQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLST 76 (192)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHT
T ss_pred ceeEEEEEECcCHHHHHHHHHHHhCCC----cEEEE-ECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhh
Confidence 345799999999999999999999999 99999 999976543321 1 1
Q ss_pred ceeccCchhhccCCCEEEEeeCcc--cHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcC
Q 024016 59 VKVLSDNNAVVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGE 135 (274)
Q Consensus 59 ~~~~~~~~~~~~~aDiIil~v~~~--~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~ 135 (274)
+...++..+++.+||+|+-|++-+ .-++++.++.+..++++++.|.++++++..+.+.+. ..+++..|+..|.....
T Consensus 77 i~~~~d~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~HffnP~~~~~ 156 (192)
T d1f0ya2 77 IATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMK 156 (192)
T ss_dssp EEEESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCC
T ss_pred ccccchhHhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccchhhhhccCHhHEEeeccccccCccc
Confidence 234556677889999999999854 356889999999999999999999999999988776 35788888877665432
Q ss_pred CceEEecCCCCCHHHHHHHHHHhhhcCCe-EEcC
Q 024016 136 AATVMSLGGTATEEDGELIGKLFGSVGKI-WRAD 168 (274)
Q Consensus 136 g~~~i~~~~~~~~~~~~~v~~ll~~~g~~-~~~~ 168 (274)
..-+++++..+++.++.+..+++.+|+. +.+.
T Consensus 157 -lVEIv~g~~T~~~~i~~~~~~~~~lgk~pV~v~ 189 (192)
T d1f0ya2 157 -LVEVIKTPMTSQKTFESLVDFSKALGKHPVSCK 189 (192)
T ss_dssp -EEEEECCTTCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred -EEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEee
Confidence 3446778889999999999999999975 5543
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.73 E-value=9.4e-18 Score=128.55 Aligned_cols=146 Identities=16% Similarity=0.141 Sum_probs=104.7
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccHHHHHHH
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVKDVAMQ 90 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~~v~~~ 90 (274)
||||||+|+||.+|+++|+++|+ . ++| +|++++.+++.+.+.... +..+.+.++|++|+++| ++.+..+..+
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~g~----~-~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~v~~~~~~ 74 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARRFP----T-LVW-NRTFEKALRHQEEFGSEA-VPLERVAEARVIFTCLPTTREVYEVAEA 74 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTTSC----E-EEE-CSSTHHHHHHHHHHCCEE-CCGGGGGGCSEEEECCSSHHHHHHHHHH
T ss_pred eEEEEeHHHHHHHHHHHHHhCCC----E-EEE-eCCHHHHHHHHHHcCCcc-cccccccceeEEEecccchhhhhhhhcc
Confidence 79999999999999999999987 4 478 888888877776433333 34566778999999997 4567778888
Q ss_pred hccccCCCCEEEEecCCCCHH---HHHHhhC--CCceEEE-cCCcHHhhcCCceE-EecCCCCCHHHHHHHHHHhhhcCC
Q 024016 91 IRPLLSRKKLLVSVAAGVKLK---DLQEWTG--HSRFIRV-MPNTPSAVGEAATV-MSLGGTATEEDGELIGKLFGSVGK 163 (274)
Q Consensus 91 i~~~l~~~~~vis~~~g~~~~---~l~~~~~--~~~~~~~-~p~~~~~~~~g~~~-i~~~~~~~~~~~~~v~~ll~~~g~ 163 (274)
+.+.+.+++++|+++ ++.++ ++.+.+. +..++.+ +...|....+|... ++.| +++.+++++++|+ ++.
T Consensus 75 l~~~~~~~~~iid~s-T~~p~~~~~~~~~~~~~gi~~ldapVsGg~~~A~~G~L~~~vgG---~~~~~~~~~p~L~-~~~ 149 (156)
T d2cvza2 75 LYPYLREGTYWVDAT-SGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGG---PEEAVERVRPFLA-YAK 149 (156)
T ss_dssp HTTTCCTTEEEEECS-CCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEES---CHHHHHHHGGGCT-TEE
T ss_pred ccccccccccccccc-cCCHHHHHHHHHHHHHcCCeEEeccccCchhhhccCCEEEEEeC---CHHHHHHHHHHHH-hcC
Confidence 888899999998764 45544 3444443 2334432 33456666677644 4444 7999999999995 665
Q ss_pred -eEEcCc
Q 024016 164 -IWRADE 169 (274)
Q Consensus 164 -~~~~~e 169 (274)
++++++
T Consensus 150 ~v~~~GP 156 (156)
T d2cvza2 150 KVVHVGP 156 (156)
T ss_dssp EEEEEES
T ss_pred cCEEeCc
Confidence 477653
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.67 E-value=7.6e-16 Score=121.03 Aligned_cols=152 Identities=16% Similarity=0.114 Sum_probs=120.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----------cC-------------ceeccC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----------IG-------------VKVLSD 64 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-----------~g-------------~~~~~~ 64 (274)
+.+||+|||+|.||+.||..++.+|+ +|++| |++++..+...+ .+ +...++
T Consensus 3 ~I~~vaViGaG~mG~~iA~~~a~~G~----~V~l~-D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 77 (186)
T d1wdka3 3 DVKQAAVLGAGIMGGGIAYQSASKGT----PILMK-DINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLS 77 (186)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHTTC----CEEEE-CSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESS
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCC----eEEEE-ECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecccc
Confidence 45789999999999999999999999 99999 999987554321 11 223333
Q ss_pred chhhccCCCEEEEeeCcc--cHHHHHHHhccccCCCCEEEEecCCCCHHHHHHhhC-CCceEEEcCCcHHhhcCCceEEe
Q 024016 65 NNAVVEYSDVVVFSVKPQ--VVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMS 141 (274)
Q Consensus 65 ~~~~~~~aDiIil~v~~~--~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~-~~~~~~~~p~~~~~~~~g~~~i~ 141 (274)
.+.+.++|+||-|+|-+ .-++++.+|.+..++++++.|.+++++++.+.+.+. ..+++..|+..|.+.... .-++
T Consensus 78 -~~~~~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~la~~~~~p~r~~g~Hf~nP~~~~~l-VEiv 155 (186)
T d1wdka3 78 -YGDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPL-VEVI 155 (186)
T ss_dssp -STTGGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCCE-EEEE
T ss_pred -cccccccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHHHHHHhccCchheEeeccccCcccCCe-EEEC
Confidence 34578999999999744 456788999999999999999999999999988776 357888888777664433 3355
Q ss_pred cCCCCCHHHHHHHHHHhhhcCCe-EEc
Q 024016 142 LGGTATEEDGELIGKLFGSVGKI-WRA 167 (274)
Q Consensus 142 ~~~~~~~~~~~~v~~ll~~~g~~-~~~ 167 (274)
+++..+++.++.+..+++.+|+. +.+
T Consensus 156 ~~~~T~~~~~~~~~~~~~~lgk~pv~v 182 (186)
T d1wdka3 156 RGEKSSDLAVATTVAYAKKMGKNPIVV 182 (186)
T ss_dssp ECSSCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 67888999999999999999985 554
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.66 E-value=3.8e-16 Score=122.24 Aligned_cols=143 Identities=17% Similarity=0.275 Sum_probs=103.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC--HHHHHHHHHc------C-------ceeccCchhhccCCCEE
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN--LKRRDAFESI------G-------VKVLSDNNAVVEYSDVV 75 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~--~~~~~~l~~~------g-------~~~~~~~~~~~~~aDiI 75 (274)
|||+|||+|+||+++|..|.++|+ +|++| .|. ++..+.+.+. + +...++..++++++|+|
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~----~V~l~-~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~I 75 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGN----EVRIW-GTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVV 75 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCC----EEEEE-CCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC----EEEEE-EecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchh
Confidence 799999999999999999999999 99999 884 4456666541 1 22346667889999999
Q ss_pred EEeeCcccHHHHHHHhccccCCCCEEEEecCCCC---------HHHHHHhhCC--Cc-eEEEcCCcHHhhcCCc-eEEec
Q 024016 76 VFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVK---------LKDLQEWTGH--SR-FIRVMPNTPSAVGEAA-TVMSL 142 (274)
Q Consensus 76 il~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~---------~~~l~~~~~~--~~-~~~~~p~~~~~~~~g~-~~i~~ 142 (274)
|+|||++.++++++++.++++++ .++.+++|+. .+.+.+..+. .+ ++-.-|+.+.++..|. +.++.
T Consensus 76 i~avps~~~~~~~~~l~~~l~~~-~ii~~tkg~~~~~~~~~~~~~~~~~~~~~~~~~~~vlsGP~~A~Ei~~~~pt~~vi 154 (180)
T d1txga2 76 LLGVSTDGVLPVMSRILPYLKDQ-YIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREVAKRMPTTVVF 154 (180)
T ss_dssp EECSCGGGHHHHHHHHTTTCCSC-EEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHHHTTCCEEEEE
T ss_pred hcccchhhhHHHHHhhccccccc-eecccccCccccccccccchHHHHhhhcccccceeEEcCCccHHHHHcCCCcEEEE
Confidence 99999999999999999998665 5555555541 1233333331 22 2334588888776665 33332
Q ss_pred CCCCCHHHHHHHHHHhhh
Q 024016 143 GGTATEEDGELIGKLFGS 160 (274)
Q Consensus 143 ~~~~~~~~~~~v~~ll~~ 160 (274)
. +.+.+..+.++++|+.
T Consensus 155 a-s~~~~~a~~i~~~f~~ 171 (180)
T d1txga2 155 S-SPSESSANKMKEIFET 171 (180)
T ss_dssp E-CSCHHHHHHHHHHHCB
T ss_pred E-cCCHHHHHHHHHHHCC
Confidence 2 2367888899999876
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=99.62 E-value=2.7e-15 Score=117.37 Aligned_cols=92 Identities=20% Similarity=0.261 Sum_probs=80.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCc---------------eeccCchhhccCCCEE
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV---------------KVLSDNNAVVEYSDVV 75 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~---------------~~~~~~~~~~~~aDiI 75 (274)
+||+|||+|+||.++|..|.++|| +|++| +|++++.+.+.+.+. ...+++.++++++|+|
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~i 76 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQ----SVLAW-DIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVI 76 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEE
T ss_pred CEEEEECccHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEE
Confidence 699999999999999999999999 99999 999999988876331 2345678889999999
Q ss_pred EEeeCcccHHHHHHHhccccCCCCEEEEecCCC
Q 024016 76 VFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGV 108 (274)
Q Consensus 76 il~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~ 108 (274)
|+|+|+...+++++++.+++.++++|+. .++.
T Consensus 77 ii~v~~~~~~~~~~~i~~~l~~~~~iv~-~~g~ 108 (184)
T d1bg6a2 77 LIVVPAIHHASIAANIASYISEGQLIIL-NPGA 108 (184)
T ss_dssp EECSCGGGHHHHHHHHGGGCCTTCEEEE-SSCC
T ss_pred EEEEchhHHHHHHHHhhhccCCCCEEEE-eCCC
Confidence 9999999999999999999999988774 4444
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=5.4e-16 Score=119.59 Aligned_cols=143 Identities=13% Similarity=0.183 Sum_probs=102.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcC-------ceeccCchhhccCCCEEEEeeCccc
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIG-------VKVLSDNNAVVEYSDVVVFSVKPQV 83 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g-------~~~~~~~~~~~~~aDiIil~v~~~~ 83 (274)
|||+|||+|+||+.++..|.++|| +|++| +|++++.+.+...+ .....+..+....+|+||+|||+.+
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~----~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka~~ 75 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGH----EVQGW-LRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQ 75 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGGG
T ss_pred CEEEEECcCHHHHHHHHHHHHCCC----ceEEE-EcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeecccc
Confidence 799999999999999999999999 99999 99987654333211 1233455667789999999999999
Q ss_pred HHHHHHHhccccCCCCEEEEecCCCCHHH-HHHhhCCCceEEEc--------CCcHHhhcCCceEEecCCCCCHHHHHHH
Q 024016 84 VKDVAMQIRPLLSRKKLLVSVAAGVKLKD-LQEWTGHSRFIRVM--------PNTPSAVGEAATVMSLGGTATEEDGELI 154 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~~~g~~~~~-l~~~~~~~~~~~~~--------p~~~~~~~~g~~~i~~~~~~~~~~~~~v 154 (274)
++++++.+.+.+.+++.|+++.+|+..++ +++ . ..+++... |....+.+.|.+.+.+.. ...+..+.+
T Consensus 76 ~~~~~~~l~~~~~~~~~Iv~~qNG~~~~~~l~~-~-~~~v~~g~~~~~~~~~~~~i~~~~~g~t~ig~~~-~~~~~~~~l 152 (167)
T d1ks9a2 76 VSDAVKSLASTLPVTTPILLIHNGMGTIEELQN-I-QQPLLMGTTTHAARRDGNVIIHVANGITHIGPAR-QQDGDYSYL 152 (167)
T ss_dssp HHHHHHHHHTTSCTTSCEEEECSSSCTTGGGTT-C-CSCEEEEEECCEEEEETTEEEEEECCCEEEEESS-GGGTTCTHH
T ss_pred hHHHHHhhccccCcccEEeeccCcccHHHHHhh-c-CCcEEEEEeeEeEEecCCEEEEeCCcCEEEeeCC-CcchhHHHH
Confidence 99999999999999999999999987543 333 2 23343322 222223455666665432 233445677
Q ss_pred HHHhhhc
Q 024016 155 GKLFGSV 161 (274)
Q Consensus 155 ~~ll~~~ 161 (274)
.++|+..
T Consensus 153 ~~~l~~a 159 (167)
T d1ks9a2 153 ADILQTV 159 (167)
T ss_dssp HHHHHTT
T ss_pred HHHHHhh
Confidence 8888643
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=99.30 E-value=7.2e-13 Score=106.93 Aligned_cols=149 Identities=14% Similarity=0.147 Sum_probs=105.3
Q ss_pred CeEEEEcccH--HHHHHHH------HHHhCCCCCCCcEEEEeCCCHHHH-HHHH----------------H---------
Q 024016 11 FILGFIGAGK--MAESIAK------GVAKSGVLPPDRICTAVHSNLKRR-DAFE----------------S--------- 56 (274)
Q Consensus 11 ~~IgiIG~G~--mG~~~a~------~L~~~g~~~~~~v~v~~~r~~~~~-~~l~----------------~--------- 56 (274)
.++.++|+|. ||..++. ++.+.|+ .|+.. |-++++. +.+. +
T Consensus 41 ~~~~~~gagl~~~~~gi~~v~vs~~~fa~~g~----~v~~~-d~d~~~v~~~~~~g~~~i~~p~l~~~v~~~~~~~~~~~ 115 (242)
T d2b0ja2 41 HSSITYGAELLHLVPDVKEVIVSDPCFAEEPG----LVVID-EFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPP 115 (242)
T ss_dssp CHHHHHHHHHHHHCTTCCEEEEECGGGGSSSE----EEECC-CSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCTT
T ss_pred eeeeeeeecHHhhhhchhhhhccchhhhhcCC----eEEEE-eCCHHHHHHHHhcCCchhhcchHHHHHHHHHHhccCCc
Confidence 4678888886 7776766 5678887 77777 8886542 2111 0
Q ss_pred -----------cCceeccCchhhccCCCEEEEeeCc-ccHHHHHHHhccccCCCCEEEEecCCCCHH---HHHHhhC--C
Q 024016 57 -----------IGVKVLSDNNAVVEYSDVVVFSVKP-QVVKDVAMQIRPLLSRKKLLVSVAAGVKLK---DLQEWTG--H 119 (274)
Q Consensus 57 -----------~g~~~~~~~~~~~~~aDiIil~v~~-~~~~~v~~~i~~~l~~~~~vis~~~g~~~~---~l~~~~~--~ 119 (274)
.|+++++|+.|+++++|+||+|+|. +..++++++|.++++++++|++++ +++.. .+.+.+. +
T Consensus 116 ~~~~~~~~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi~~I~~~l~~g~Iiid~S-Ti~~~~~~~l~e~l~~kg 194 (242)
T d2b0ja2 116 KACIHLVHPEDVGLKVTSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHAC-TIPTTKFAKIFKDLGRED 194 (242)
T ss_dssp TEEEESSCGGGGTCEEESCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECS-SSCHHHHHHHHHHTTCTT
T ss_pred cchhhcCCHHHCCCEEECCHHHHHhcCCeEEEeeecHHHHHHHHHHHHhhCCCCcEEEecC-CCcHHHHHHHHHhcccCC
Confidence 2467778899999999999999974 668899999999999999888764 45544 3444443 3
Q ss_pred CceEEEcCCcHHhhcCCceEEecCCCCCHHHHHHHHHHhhhcCCe-EEc
Q 024016 120 SRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI-WRA 167 (274)
Q Consensus 120 ~~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~-~~~ 167 (274)
.+++..||..+... .|...+..+ ..+++.++++.++|+.+|+. +++
T Consensus 195 i~vi~~hp~a~pe~-~g~~li~~~-~aseE~iekv~elles~Gk~~~vv 241 (242)
T d2b0ja2 195 LNITSYHPGCVPEM-KGQVYIAEG-YASEEAVNKLYEIGKIARGKAFKM 241 (242)
T ss_dssp SEEEECBCSSCTTT-CCCEEEEES-SSCHHHHHHHHHHHHHHHSCEEEE
T ss_pred CEEECCCccCcCcc-ccceEEecC-CCCHHHHHHHHHHHHHHCCCeEeC
Confidence 45677777554332 333333332 45899999999999999975 543
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.22 E-value=4e-11 Score=90.25 Aligned_cols=146 Identities=20% Similarity=0.226 Sum_probs=105.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH-HHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-RRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~-~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v 87 (274)
+.++|+|||.|.-|.+-|.+|.++|. +|++- -|... ..++..+.|.++. +..|+++.+|+|++.+|+..-.++
T Consensus 15 k~k~IaViGYGsQG~AhAlNLrDSG~----~V~VG-Lr~gs~s~~~A~~~Gf~v~-~~~eA~~~aDiim~L~PD~~q~~v 88 (182)
T d1np3a2 15 QGKKVAIIGYGSQGHAHACNLKDSGV----DVTVG-LRSGSATVAKAEAHGLKVA-DVKTAVAAADVVMILTPDEFQGRL 88 (182)
T ss_dssp HTSCEEEECCSHHHHHHHHHHHHTTC----CEEEE-CCTTCHHHHHHHHTTCEEE-CHHHHHHTCSEEEECSCHHHHHHH
T ss_pred CCCEEEEEeeCcHhHHHHhhhhhcCC----CEEEE-cCCCCccHHHHhhhccccc-cHHHHhhhcCeeeeecchHHHHHH
Confidence 35799999999999999999999999 99888 66653 4566666898875 788999999999999999999999
Q ss_pred HH-HhccccCCCCEEEEecCCCCHHHHHHhhC--CCceEEEcCCcHHh-------hcCCceEEe-cCCCCCHHHHHHHHH
Q 024016 88 AM-QIRPLLSRKKLLVSVAAGVKLKDLQEWTG--HSRFIRVMPNTPSA-------VGEAATVMS-LGGTATEEDGELIGK 156 (274)
Q Consensus 88 ~~-~i~~~l~~~~~vis~~~g~~~~~l~~~~~--~~~~~~~~p~~~~~-------~~~g~~~i~-~~~~~~~~~~~~v~~ 156 (274)
++ +|.+++++|+.+. .+.|..+..- ...| +..++-+-|..|.+ .+.|+..++ ...+.+..+.+....
T Consensus 89 y~~~I~p~lk~g~~L~-FaHGfnIh~~-~I~pp~~vdV~mvAPKgpG~~VR~~y~~G~Gvp~l~AV~qD~sg~A~~~ala 166 (182)
T d1np3a2 89 YKEEIEPNLKKGATLA-FAHGFSIHYN-QVVPRADLDVIMIAPKAPGHTVRSEFVKGGGIPDLIAIYQDASGNAKNVALS 166 (182)
T ss_dssp HHHHTGGGCCTTCEEE-ESCCHHHHTT-SSCCCTTCEEEEEEESSCSHHHHHHHHTTCCCCEEEEEEECSSSCHHHHHHH
T ss_pred HHHhhhhhcCCCcEEE-EeccceEEee-eeecCCCCceEeeccccccchhHHHhhcCCccceEEEEEeCCCccHHHHHHH
Confidence 96 6999999998766 5566654321 2223 34555555655432 245654433 222334456666666
Q ss_pred HhhhcC
Q 024016 157 LFGSVG 162 (274)
Q Consensus 157 ll~~~g 162 (274)
+...+|
T Consensus 167 yA~~iG 172 (182)
T d1np3a2 167 YACGVG 172 (182)
T ss_dssp HHHHTT
T ss_pred HHHHhC
Confidence 666666
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.19 E-value=6.3e-11 Score=93.70 Aligned_cols=146 Identities=14% Similarity=0.168 Sum_probs=93.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--------------------cCceeccCchhhcc
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------------------IGVKVLSDNNAVVE 70 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~--------------------~g~~~~~~~~~~~~ 70 (274)
|||+|||+|.+|.++|..|.++|| +|++| |.++++.+.+.+ ......++..++++
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g~----~V~g~-D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~ 75 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARGH----EVIGV-DVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVL 75 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHH
T ss_pred CEEEEECCCHhHHHHHHHHHhCCC----cEEEE-eCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHh
Confidence 799999999999999999999999 99999 999998887653 12345567788899
Q ss_pred CCCEEEEeeCcc----------cHHHHHHHhc---cccCCCCEEEEecCCCCHH---H-----HHHhhC---CCc-eEEE
Q 024016 71 YSDVVVFSVKPQ----------VVKDVAMQIR---PLLSRKKLLVSVAAGVKLK---D-----LQEWTG---HSR-FIRV 125 (274)
Q Consensus 71 ~aDiIil~v~~~----------~~~~v~~~i~---~~l~~~~~vis~~~g~~~~---~-----l~~~~~---~~~-~~~~ 125 (274)
++|++|+|||.. .+..++..+. ....++++||.- +++++. . +.+... +.. .+.+
T Consensus 76 ~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~-STv~pGtt~~~~~~~l~~~~~~~~~~~~~~~~ 154 (202)
T d1mv8a2 76 DSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVR-STVLPGTVNNVVIPLIEDCSGKKAGVDFGVGT 154 (202)
T ss_dssp TCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEEC-SCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEE
T ss_pred hCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeec-cccCCcchhhhhhhhhhccccccccccccchh
Confidence 999999999731 2445554443 334577777743 334332 1 112111 111 2334
Q ss_pred cCC-----cHHh-hcCCceEEecCCCCCHHHHHHHHHHhhhcCCe
Q 024016 126 MPN-----TPSA-VGEAATVMSLGGTATEEDGELIGKLFGSVGKI 164 (274)
Q Consensus 126 ~p~-----~~~~-~~~g~~~i~~~~~~~~~~~~~v~~ll~~~g~~ 164 (274)
.|. .... ...-...+..+ .+++..+.++++++.+...
T Consensus 155 ~PE~~~~G~a~~d~~~~~~iViG~--~~~~~~~~~~~ly~~i~~~ 197 (202)
T d1mv8a2 155 NPEFLRESTAIKDYDFPPMTVIGE--LDKQTGDLLEEIYRELDAP 197 (202)
T ss_dssp CCCCCCTTSHHHHHHSCSCEEEEE--SSHHHHHHHHHHHTTSSSC
T ss_pred hhhhhcccchhhhhcCCCeEEEEe--CCHHHHHHHHHHHHhcCCC
Confidence 443 1111 11111233333 2678889999999988743
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=99.09 E-value=4.6e-10 Score=87.37 Aligned_cols=154 Identities=16% Similarity=0.124 Sum_probs=105.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC--CCCCcEEEEeCCCHHHHHHHHHcCcee----ccCchhhccCCCEEEEeeCccc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGV--LPPDRICTAVHSNLKRRDAFESIGVKV----LSDNNAVVEYSDVVVFSVKPQV 83 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~--~~~~~v~v~~~r~~~~~~~l~~~g~~~----~~~~~~~~~~aDiIil~v~~~~ 83 (274)
++||+|||.|.-|.+-|.+|.++|. ....+|++-..+.....++..+.|..+ ..+..|+++.+|+|++.+|++.
T Consensus 44 ~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLlPDe~ 123 (226)
T d1qmga2 44 IKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLISDSA 123 (226)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECSCHHH
T ss_pred CCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEecchHH
Confidence 4689999999999999999999663 001156655233334556666677652 2356789999999999999999
Q ss_pred HHHHHHHhccccCCCCEEEEecCCCCHHHHHHh---hC-CCceEEEcCCcHHhh-------cC-----CceEEe-cCCCC
Q 024016 84 VKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQEW---TG-HSRFIRVMPNTPSAV-------GE-----AATVMS-LGGTA 146 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~---~~-~~~~~~~~p~~~~~~-------~~-----g~~~i~-~~~~~ 146 (274)
-.+++++|.|++++|+.+. .+.|..+...+.. .| +..++-+-|..|.+. ++ |+..++ ...+.
T Consensus 124 Q~~vy~~I~p~Lk~G~~L~-FaHGFnI~~~~~~~~~~p~dvdVimVAPKgPGh~VR~~Y~~Gk~~~G~GVP~LiAV~QD~ 202 (226)
T d1qmga2 124 QADNYEKVFSHMKPNSILG-LSHGFLLGHLQSLGQDFPKNISVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQDV 202 (226)
T ss_dssp HHHHHHHHHHHSCTTCEEE-ESSSHHHHHHHHHTCCCCTTSEEEEEEESSCHHHHHHHHHHHTTTTCCCCCEEEEEEECS
T ss_pred HHHHHHHHHHhcCCCceee-ecchhhhhhceeeecccCCCceEEEECCCCCCchHHHHHHcccccCCCCceeEEEEEECC
Confidence 9999999999999998766 5577765433322 23 455665557665432 22 655443 22334
Q ss_pred CHHHHHHHHHHhhhcCCe
Q 024016 147 TEEDGELIGKLFGSVGKI 164 (274)
Q Consensus 147 ~~~~~~~v~~ll~~~g~~ 164 (274)
+..+.+....+...+|.-
T Consensus 203 sG~A~~~alayA~aIG~g 220 (226)
T d1qmga2 203 DGRATDVALGWSIALGSP 220 (226)
T ss_dssp SSCHHHHHHHHHHHHTCS
T ss_pred CCcHHHHHHHHHHhCCCC
Confidence 556778888888888853
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=98.92 E-value=2.2e-09 Score=83.53 Aligned_cols=111 Identities=14% Similarity=0.196 Sum_probs=82.9
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccHH
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVK 85 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~ 85 (274)
....++|||||+|++|..+++.|..-|. +|..| +|...........+.....+..+++++||+|++++| .+..+
T Consensus 41 ~l~~~~vgiiG~G~IG~~va~~l~~fg~----~v~~~-d~~~~~~~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~ 115 (188)
T d2naca1 41 DLEAMHVGTVAAGRIGLAVLRRLAPFDV----HLHYT-DRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETE 115 (188)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHGGGTC----EEEEE-CSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTT
T ss_pred eccccceeeccccccchhhhhhhhccCc----eEEEE-eeccccccccccccccccCCHHHHHHhccchhhcccccccch
Confidence 3456899999999999999999988887 99999 987554444445667777788999999999999998 33444
Q ss_pred HHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhCCCce
Q 024016 86 DVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTGHSRF 122 (274)
Q Consensus 86 ~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~~~~~ 122 (274)
.++ .+....++++.++|.++-| +..+.+.+.+...++
T Consensus 116 ~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i 155 (188)
T d2naca1 116 HMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRL 155 (188)
T ss_dssp TCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSE
T ss_pred hhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCCCc
Confidence 444 3455567899999988754 445667666653333
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=98.90 E-value=4.4e-09 Score=79.49 Aligned_cols=94 Identities=20% Similarity=0.256 Sum_probs=68.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCcee--ccCchhhccCCCEEEEeeCccc-
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKV--LSDNNAVVEYSDVVVFSVKPQV- 83 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~--~~~~~~~~~~aDiIil~v~~~~- 83 (274)
.+.++|.|||+|.||..++++|.+.|. .+++++ +|+.++++.+.+ .|... .++..+.+.++|+||.||+...
T Consensus 22 l~~~~ilviGaG~~g~~v~~~L~~~g~---~~i~v~-nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~atss~~~ 97 (159)
T d1gpja2 22 LHDKTVLVVGAGEMGKTVAKSLVDRGV---RAVLVA-NRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAPHP 97 (159)
T ss_dssp CTTCEEEEESCCHHHHHHHHHHHHHCC---SEEEEE-CSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSSSC
T ss_pred cccCeEEEECCCHHHHHHHHHHHhcCC---cEEEEE-cCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecCCCCc
Confidence 356799999999999999999999986 369999 999999988887 56543 3556677889999999996431
Q ss_pred --HHHHHHHhcccc--CCCCEEEEec
Q 024016 84 --VKDVAMQIRPLL--SRKKLLVSVA 105 (274)
Q Consensus 84 --~~~v~~~i~~~l--~~~~~vis~~ 105 (274)
-.+.++.....- .+..++|++.
T Consensus 98 ii~~~~i~~~~~~r~~~~~~~iiDla 123 (159)
T d1gpja2 98 VIHVDDVREALRKRDRRSPILIIDIA 123 (159)
T ss_dssp CBCHHHHHHHHHHCSSCCCEEEEECC
T ss_pred cccHhhhHHHHHhcccCCCeEEEeec
Confidence 244444332211 2234677763
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.89 E-value=1.8e-09 Score=83.38 Aligned_cols=100 Identities=11% Similarity=0.145 Sum_probs=76.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCc-ccHHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVVKD 86 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~-~~~~~ 86 (274)
...++|||||+|++|..+++.+..-|. +|++| +|++.. .......+..+++++||+|++++|. +..+.
T Consensus 40 l~gk~vgIiG~G~IG~~va~~l~~~g~----~v~~~-d~~~~~------~~~~~~~~l~ell~~sDiv~~~~pl~~~t~~ 108 (181)
T d1qp8a1 40 IQGEKVAVLGLGEIGTRVGKILAALGA----QVRGF-SRTPKE------GPWRFTNSLEEALREARAAVCALPLNKHTRG 108 (181)
T ss_dssp CTTCEEEEESCSTHHHHHHHHHHHTTC----EEEEE-CSSCCC------SSSCCBSCSHHHHTTCSEEEECCCCSTTTTT
T ss_pred ccCceEEEeccccccccceeeeecccc----ccccc-cccccc------cceeeeechhhhhhccchhhccccccccccc
Confidence 456899999999999999999999998 99999 988642 1233446788999999999999983 33444
Q ss_pred HH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 87 VA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 87 v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
++ .+....++++.++|+++-| +..+.+.+.+.
T Consensus 109 li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~ 143 (181)
T d1qp8a1 109 LVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILK 143 (181)
T ss_dssp CBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred ccccceeeeccccceEEeccccccccchhhhhhcc
Confidence 44 3455667899999998654 45566666554
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=98.88 E-value=2.1e-09 Score=83.76 Aligned_cols=107 Identities=13% Similarity=0.108 Sum_probs=78.9
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCc-ccHH
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVVK 85 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~-~~~~ 85 (274)
....++|||||+|++|+.+++.+..-|. +|.+| ++...........+.....+..++++.||+|++++|- +..+
T Consensus 44 ~l~g~tvgIiG~G~IG~~va~~l~~fg~----~v~~~-d~~~~~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~ 118 (191)
T d1gdha1 44 KLDNKTLGIYGFGSIGQALAKRAQGFDM----DIDYF-DTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETR 118 (191)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTTC----EEEEE-CSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTT
T ss_pred eecccceEEeecccchHHHHHHHHhhcc----ccccc-cccccccchhhcccccccCCHHHHHhhCCeEEecCCCCchHh
Confidence 3345899999999999999999988888 99999 8866544433344555556788999999999999983 3444
Q ss_pred HHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 86 DVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 86 ~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
.++ .+....++++.++|+++=| +..+.+.+.+.
T Consensus 119 ~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~ 154 (191)
T d1gdha1 119 YFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALE 154 (191)
T ss_dssp TCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred heecHHHhhCcCCccEEEecCCccchhhHHHHHHHH
Confidence 444 3455568899999998744 44556666554
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=98.87 E-value=2.1e-09 Score=83.86 Aligned_cols=107 Identities=18% Similarity=0.181 Sum_probs=79.2
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCc-ccH
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVV 84 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~-~~~ 84 (274)
.....++|||||+|++|+.+++.+..-|. +|..| ++..... .....++....+..++++.||+|++++|. ...
T Consensus 45 ~eL~gktvgIiG~G~IG~~va~~l~~fg~----~v~~~-d~~~~~~-~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T 118 (193)
T d1mx3a1 45 ARIRGETLGIIGLGRVGQAVALRAKAFGF----NVLFY-DPYLSDG-VERALGLQRVSTLQDLLFHSDCVTLHCGLNEHN 118 (193)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHTTTC----EEEEE-CTTSCTT-HHHHHTCEECSSHHHHHHHCSEEEECCCCCTTC
T ss_pred eeeeCceEEEeccccccccceeeeecccc----ceeec-cCccccc-chhhhccccccchhhccccCCEEEEeecccccc
Confidence 44556899999999999999999998888 99999 8865432 22335676667889999999999999983 333
Q ss_pred HHHH-HHhccccCCCCEEEEecCCC--CHHHHHHhhC
Q 024016 85 KDVA-MQIRPLLSRKKLLVSVAAGV--KLKDLQEWTG 118 (274)
Q Consensus 85 ~~v~-~~i~~~l~~~~~vis~~~g~--~~~~l~~~~~ 118 (274)
..++ .+....++++.++|.++-|- ..+.+.+.+.
T Consensus 119 ~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~ 155 (193)
T d1mx3a1 119 HHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALK 155 (193)
T ss_dssp TTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred hhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHH
Confidence 3333 23445678999999987543 4556666664
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.85 E-value=1.8e-08 Score=74.89 Aligned_cols=95 Identities=14% Similarity=0.190 Sum_probs=65.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH----H----c--CceeccCchhhccCCCEEEEee
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S----I--GVKVLSDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~----~----~--g~~~~~~~~~~~~~aDiIil~v 79 (274)
.+||+|||+|++|.+++..|...|.. .+|.++ |+++++++... . . ......+ .+.+++||+|+++.
T Consensus 5 ~~KI~IIGaG~VG~~~A~~l~~~~~~--~elvL~-D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d-~~~~~~adivvita 80 (146)
T d1ez4a1 5 HQKVVLVGDGAVGSSYAFAMAQQGIA--EEFVIV-DVVKDRTKGDALDLEDAQAFTAPKKIYSGE-YSDCKDADLVVITA 80 (146)
T ss_dssp BCEEEEECCSHHHHHHHHHHHHHTCC--SEEEEE-CSSHHHHHHHHHHHHGGGGGSCCCEEEECC-GGGGTTCSEEEECC
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCC--cEEEEe-ecccchhHHHHHHHhccccccCCceEeecc-HHHhccccEEEEec
Confidence 46999999999999999999998863 389999 99987654322 1 1 1223334 45578999999986
Q ss_pred C----cc------------cHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 80 K----PQ------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 80 ~----~~------------~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
. +. .++++.+++..+ .|+.+++-.+++..
T Consensus 81 g~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~-~p~aivivvtNPvd 125 (146)
T d1ez4a1 81 GAPQKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLVAANPVD 125 (146)
T ss_dssp CC----------CHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHHhhc-CCCcEEEEeCCccH
Confidence 2 21 133444555554 57778887777654
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.81 E-value=2.5e-08 Score=72.84 Aligned_cols=89 Identities=15% Similarity=0.190 Sum_probs=66.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceec-cC---ch---h-hccCCCEEEEeeCc
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVL-SD---NN---A-VVEYSDVVVFSVKP 81 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~-~~---~~---~-~~~~aDiIil~v~~ 81 (274)
|||.|+|+|.+|..+++.|.+.|+ +|++. ++++++++.+.+ .+..+. .| .. + -++++|.++.++++
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~----~v~vi-d~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~ 75 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGH----DIVLI-DIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGK 75 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC----Cccee-cCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCc
Confidence 799999999999999999999999 99999 999999998876 465442 12 11 1 15689999999887
Q ss_pred ccHHHHHHHhccccCCCCEEEEe
Q 024016 82 QVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 82 ~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
+...-.+..+...+.+..+++-.
T Consensus 76 d~~N~~~~~~~k~~~~~~iI~~~ 98 (132)
T d1lssa_ 76 EEVNLMSSLLAKSYGINKTIARI 98 (132)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEC
T ss_pred HHHHHHHHHHHHHcCCceEEEEe
Confidence 76544444444455666655443
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=98.80 E-value=1.1e-08 Score=77.69 Aligned_cols=99 Identities=11% Similarity=0.095 Sum_probs=69.6
Q ss_pred CCeEEEEcccHHHHH-HHHHHHhC-CCCCCCcEE-EEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCcccHH
Q 024016 10 SFILGFIGAGKMAES-IAKGVAKS-GVLPPDRIC-TAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~-~a~~L~~~-g~~~~~~v~-v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~~~~ 85 (274)
++||||||+|+||.. ....+.+. ++ ++. ++ ++++++++.+.+ .++...++..++.++.|+|++|+|+....
T Consensus 1 Kiri~iIG~G~~g~~~~~~~l~~~~~~----~i~~v~-d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~~~h~ 75 (164)
T d1tlta1 1 KLRIGVVGLGGIAQKAWLPVLAAASDW----TLQGAW-SPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHF 75 (164)
T ss_dssp CEEEEEECCSTHHHHTHHHHHHSCSSE----EEEEEE-CSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHH
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCCc----EEEEEE-echhHhhhhhhhcccccccccchhhhhhcccccccccchhcc
Confidence 369999999999985 56666554 33 554 56 999999888776 78887788888889999999999998877
Q ss_pred HHHHHhccccCCCCEEE-EecCCCCHHHHHHh
Q 024016 86 DVAMQIRPLLSRKKLLV-SVAAGVKLKDLQEW 116 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vi-s~~~g~~~~~l~~~ 116 (274)
++...... .|+-|+ .---+.+.++..+.
T Consensus 76 ~~~~~al~---~gk~V~~EKPla~~~~e~~~l 104 (164)
T d1tlta1 76 DVVSTLLN---AGVHVCVDKPLAENLRDAERL 104 (164)
T ss_dssp HHHHHHHH---TTCEEEEESSSCSSHHHHHHH
T ss_pred cccccccc---ccceeeccccccCCHHHHHHH
Confidence 77665543 343343 22123345555443
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.75 E-value=3.7e-08 Score=73.34 Aligned_cols=97 Identities=15% Similarity=0.176 Sum_probs=68.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH----H------cCceeccCchhhccCCCEEEEe
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S------IGVKVLSDNNAVVEYSDVVVFS 78 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~----~------~g~~~~~~~~~~~~~aDiIil~ 78 (274)
...||+|||+|.+|++++..|...|+. .++.++ |+++++++... . ....+.++..+.+++||+|+++
T Consensus 5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~--~el~L~-Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvit 81 (148)
T d1ldna1 5 GGARVVVIGAGFVGASYVFALMNQGIA--DEIVLI-DANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVIC 81 (148)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCC--SEEEEE-CSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEEC
T ss_pred CCCeEEEECcCHHHHHHHHHHHhcCCC--ceEEEE-eeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEe
Confidence 346999999999999999999999874 379999 99987743222 1 1334445556778999999998
Q ss_pred eC--c--c------------cHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 79 VK--P--Q------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 79 v~--~--~------------~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
.. . . .++++.+++..+ .|+.+++-.++++.
T Consensus 82 ag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~~ivvtNPvd 127 (148)
T d1ldna1 82 AGANQKPGETRLDLVDKNIAIFRSIVESVMAS-GFQGLFLVATNPVD 127 (148)
T ss_dssp CSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHH-TCCSEEEECSSSHH
T ss_pred cccccccCcchhHHHHHHHHHHHHHHHHHHhh-CCCceEEEecCccH
Confidence 62 1 1 234455556555 46778887777765
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=98.75 E-value=6.4e-09 Score=81.26 Aligned_cols=105 Identities=14% Similarity=0.188 Sum_probs=75.3
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCc-ccH
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVV 84 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~-~~~ 84 (274)
.....++|||||+|++|+.+|+.|..-|. +|.+| ++...... ...+... .+..+++++||+|++++|- ...
T Consensus 39 ~el~gk~vgIiG~G~IG~~va~~l~~fg~----~V~~~-d~~~~~~~--~~~~~~~-~~l~~~l~~sDii~~~~plt~~T 110 (197)
T d1j4aa1 39 REVRDQVVGVVGTGHIGQVFMQIMEGFGA----KVITY-DIFRNPEL--EKKGYYV-DSLDDLYKQADVISLHVPDVPAN 110 (197)
T ss_dssp CCGGGSEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCHHH--HHTTCBC-SCHHHHHHHCSEEEECSCCCGGG
T ss_pred ccccCCeEEEecccccchhHHHhHhhhcc----ccccc-Cccccccc--ccceeee-ccccccccccccccccCCccccc
Confidence 44566899999999999999999988887 99999 87754322 2234433 5778899999999999983 333
Q ss_pred HHHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 85 KDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 85 ~~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
+.++ .+....++++.++|.++-| +..+.+.+.+.
T Consensus 111 ~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~ 147 (197)
T d1j4aa1 111 VHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLD 147 (197)
T ss_dssp TTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred cccccHHHHhhhCCccEEEecCchhhhhhHHHHHHHh
Confidence 3333 2334457899999988644 44556666654
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=98.74 E-value=2.7e-08 Score=72.73 Aligned_cols=90 Identities=14% Similarity=0.232 Sum_probs=64.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-c---cCc---hhh-ccCCCEEEEeeCcc
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-L---SDN---NAV-VEYSDVVVFSVKPQ 82 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~-~---~~~---~~~-~~~aDiIil~v~~~ 82 (274)
+++.|||+|.+|..+++.|.+.|+ +|+++ +.++++.+.+...+..+ . +++ .++ ++++|.+|++++++
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~----~vvvi-d~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~ 75 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGH----EVLAV-DINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGAN 75 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTC----CCEEE-ESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC----eEEEe-cCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCch
Confidence 478999999999999999999999 99999 99999999988766532 1 122 122 67899999999876
Q ss_pred cHHHHH-HHhccccCCCCEEEEecC
Q 024016 83 VVKDVA-MQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 83 ~~~~v~-~~i~~~l~~~~~vis~~~ 106 (274)
....++ ..+.... +...++....
T Consensus 76 ~~~~~~~~~~~~~~-~~~~iiar~~ 99 (134)
T d2hmva1 76 IQASTLTTLLLKEL-DIPNIWVKAQ 99 (134)
T ss_dssp HHHHHHHHHHHHHT-TCSEEEEECC
T ss_pred HHhHHHHHHHHHHc-CCCcEEeecc
Confidence 544433 3333333 3334554433
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.72 E-value=9.3e-09 Score=79.91 Aligned_cols=104 Identities=19% Similarity=0.224 Sum_probs=76.2
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccH
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~ 84 (274)
.....++|||||+|++|..+++.+..-|. +|+.| ++...... .......+..++++.||+|++++| .+..
T Consensus 40 ~~l~~~~vgiiG~G~IG~~va~~l~~fg~----~v~~~-d~~~~~~~----~~~~~~~~l~ell~~sDii~i~~plt~~T 110 (188)
T d1sc6a1 40 FEARGKKLGIIGYGHIGTQLGILAESLGM----YVYFY-DIENKLPL----GNATQVQHLSDLLNMSDVVSLHVPENPST 110 (188)
T ss_dssp CCSTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCCCC----TTCEECSCHHHHHHHCSEEEECCCSSTTT
T ss_pred ccccceEEEEeecccchhhhhhhcccccc----eEeec-cccccchh----hhhhhhhhHHHHHhhccceeecccCCcch
Confidence 34456899999999999999999988888 99999 87643211 223334578899999999999997 4444
Q ss_pred HHHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 85 KDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 85 ~~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
..++ .+....++++.++|+++-| +..+.+.+.+.
T Consensus 111 ~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~ 147 (188)
T d1sc6a1 111 KNMMGAKEISLMKPGSLLINASRGTVVDIPALADALA 147 (188)
T ss_dssp TTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHH
T ss_pred hhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHH
Confidence 4444 3455567899999998754 44567777664
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=98.72 E-value=7.6e-08 Score=70.89 Aligned_cols=95 Identities=19% Similarity=0.319 Sum_probs=66.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH---------cCceeccCchhhccCCCEEEEeeC-
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES---------IGVKVLSDNNAVVEYSDVVVFSVK- 80 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~---------~g~~~~~~~~~~~~~aDiIil~v~- 80 (274)
|||+|||+|++|.+++..|...+.. .++.++ |+++++++.... ....+.++..+.+++||+|+++.-
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~--~el~L~-Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~ 77 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFA--REMVLI-DVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGV 77 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCC--SEEEEE-CSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCC--CEEEEE-ecccccccchhccccccccccccccccCCcHHHhcCCCEEEEeccc
Confidence 6999999999999999999998874 389999 999877643221 122344445667899999999962
Q ss_pred ---ccc------------HHHHHHHhccccCCCCEEEEecCCCC
Q 024016 81 ---PQV------------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 81 ---~~~------------~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
+.. ++++.+.+..+ .|+.+++-.++++.
T Consensus 78 ~~~~g~~r~dl~~~N~~I~~~i~~~i~~~-~p~aivivvtNPvd 120 (140)
T d1a5za1 78 PQKPGETRLQLLGRNARVMKEIARNVSKY-APDSIVIVVTNPVD 120 (140)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHH
T ss_pred ccCCCcchhhhhccccchHHHHHHHHHhc-CCCcEEEEeCCcHH
Confidence 221 23333444443 57778887777765
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.71 E-value=3.5e-08 Score=77.06 Aligned_cols=65 Identities=12% Similarity=0.204 Sum_probs=50.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH------------------cCceeccCchhhccCC
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES------------------IGVKVLSDNNAVVEYS 72 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~------------------~g~~~~~~~~~~~~~a 72 (274)
|||+|||+|.+|.++|..+ +.|| +|+.| |.++++.+.+.+ .......+......++
T Consensus 1 MkI~ViGlG~vGl~~a~~~-a~g~----~V~g~-Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ 74 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLL-SLQN----EVTIV-DILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEA 74 (196)
T ss_dssp CEEEEECCSHHHHHHHHHH-TTTS----EEEEE-CSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHC
T ss_pred CEEEEECCChhHHHHHHHH-HCCC----cEEEE-ECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhcc
Confidence 7999999999999999877 5699 99999 999998887763 1122333444556789
Q ss_pred CEEEEeeCc
Q 024016 73 DVVVFSVKP 81 (274)
Q Consensus 73 DiIil~v~~ 81 (274)
|+|++|||.
T Consensus 75 ~ii~v~vpt 83 (196)
T d1dlja2 75 ELVIIATPT 83 (196)
T ss_dssp SEEEECCCC
T ss_pred ccccccCCc
Confidence 999999973
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.71 E-value=2.4e-08 Score=77.24 Aligned_cols=105 Identities=12% Similarity=0.209 Sum_probs=77.8
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccHH
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVVK 85 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~~ 85 (274)
....+++||||+|++|+.+++.+..-|. +|.+| +|...+.+ ....++.. .+..+++++||+|++++| .+..+
T Consensus 41 ~l~~k~vgiiG~G~IG~~va~~~~~fg~----~v~~~-d~~~~~~~-~~~~~~~~-~~l~ell~~sDiv~~~~Plt~~T~ 113 (184)
T d1ygya1 41 EIFGKTVGVVGLGRIGQLVAQRIAAFGA----YVVAY-DPYVSPAR-AAQLGIEL-LSLDDLLARADFISVHLPKTPETA 113 (184)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTTC----EEEEE-CTTSCHHH-HHHHTCEE-CCHHHHHHHCSEEEECCCCSTTTT
T ss_pred cccceeeeeccccchhHHHHHHhhhccc----eEEee-cCCCChhH-HhhcCcee-ccHHHHHhhCCEEEEcCCCCchhh
Confidence 3456899999999999999999987776 89999 88765432 23346554 467899999999999998 34455
Q ss_pred HHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 86 DVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 86 ~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
.++ .+....++++.++|.++=| +..+.+.+.+.
T Consensus 114 ~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~ 149 (184)
T d1ygya1 114 GLIDKEALAKTKPGVIIVNAARGGLVDEAALADAIT 149 (184)
T ss_dssp TCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred hhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHh
Confidence 555 3455667899999998744 34566766665
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=98.70 E-value=1.3e-08 Score=77.84 Aligned_cols=87 Identities=16% Similarity=0.215 Sum_probs=63.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCc-eec-------cCchhhccCCCEEEEeeC
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGV-KVL-------SDNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~-~~~-------~~~~~~~~~aDiIil~v~ 80 (274)
.++|.|||+|.||..+|+.|.++|| +|++| ||+.++++.+.+ .+. ... ....+.+...|+++.++|
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~----~V~v~-dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~ 76 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGI----KVTVA-CRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIP 76 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTC----EEEEE-ESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC----EEEEE-ECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeecc
Confidence 4699999999999999999999999 99999 999999999887 221 111 122345678899999988
Q ss_pred cccHHHHHHHhccccCCCCEEEEe
Q 024016 81 PQVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 81 ~~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
......+..... ..+..++++
T Consensus 77 ~~~~~~~~~~~~---~~~~~~~~~ 97 (182)
T d1e5qa1 77 YTFHATVIKSAI---RQKKHVVTT 97 (182)
T ss_dssp GGGHHHHHHHHH---HHTCEEECS
T ss_pred chhhhHHHHHHH---hhccceeec
Confidence 776555544333 233456654
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=98.69 E-value=8e-08 Score=73.98 Aligned_cols=103 Identities=12% Similarity=0.158 Sum_probs=70.0
Q ss_pred CCCCeEEEEcccHHHHH-HHHHHHhCCCCCCCcEE-EEeCCCHHHHHHHHH-cCc-eeccCchhhcc--CCCEEEEeeCc
Q 024016 8 AESFILGFIGAGKMAES-IAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFES-IGV-KVLSDNNAVVE--YSDVVVFSVKP 81 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~-~a~~L~~~g~~~~~~v~-v~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~--~aDiIil~v~~ 81 (274)
|+++||||||+|.+|.. ....+.+.+. ..+|. ++ ++++++++.+.+ .+. ..+++..++++ +.|+|++|+|+
T Consensus 1 MkkirigiIG~G~~g~~~h~~~l~~~~~--~~~i~~v~-d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~ 77 (181)
T d1zh8a1 1 LRKIRLGIVGCGIAARELHLPALKNLSH--LFEITAVT-SRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPV 77 (181)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHHHTTTT--TEEEEEEE-CSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCG
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHHhCCC--CeEEEEEE-eccHhhhhhhhccccccceeeeeeccccccccceeeccccc
Confidence 56789999999999986 4666665332 11555 66 999999988776 554 46778888775 57999999999
Q ss_pred ccHHHHHHHhccccCCCCEEE-EecCCCCHHHHHHh
Q 024016 82 QVVKDVAMQIRPLLSRKKLLV-SVAAGVKLKDLQEW 116 (274)
Q Consensus 82 ~~~~~v~~~i~~~l~~~~~vi-s~~~g~~~~~l~~~ 116 (274)
+...+++..... .|+-|+ .---+.+.+++.+.
T Consensus 78 ~~h~~~~~~al~---~gk~V~~EKPl~~~~~e~~~l 110 (181)
T d1zh8a1 78 ELNLPFIEKALR---KGVHVICEKPISTDVETGKKV 110 (181)
T ss_dssp GGHHHHHHHHHH---TTCEEEEESSSSSSHHHHHHH
T ss_pred cccccccccccc---cchhhhcCCCCcCCHHHHHHH
Confidence 887777766543 344444 22223345554443
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=98.68 E-value=9.5e-08 Score=70.78 Aligned_cols=95 Identities=21% Similarity=0.336 Sum_probs=66.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH----H----cC--ceeccCchhhccCCCEEEEeeC
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S----IG--VKVLSDNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~----~----~g--~~~~~~~~~~~~~aDiIil~v~ 80 (274)
+||+|||+|++|++++..|+..|.. .++.++ |+++++++... . .+ ..+..+..+.+++||+|+++..
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~--~elvL~-Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG 78 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVA--DDYVFI-DANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLG 78 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCC--SEEEEE-CSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCS
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCC--ceEEEE-ecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEecc
Confidence 6999999999999999999998863 389999 99988754322 1 12 2333444566899999999852
Q ss_pred -cc-------------------cHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 81 -PQ-------------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 81 -~~-------------------~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
+. .++++.+.+..+ .|+.+++-.++++.
T Consensus 79 ~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~-~p~aivivvtNPvD 126 (146)
T d1hyha1 79 NIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKES-GFHGVLVVISNPVD 126 (146)
T ss_dssp CGGGTC-------CTTHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSHH
T ss_pred ccccccccCCccHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecCcHH
Confidence 11 133444445443 57788888878765
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=98.68 E-value=7.7e-08 Score=72.04 Aligned_cols=96 Identities=13% Similarity=0.225 Sum_probs=66.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--------cC----ceeccCchhhccCCCEEE
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------IG----VKVLSDNNAVVEYSDVVV 76 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~aDiIi 76 (274)
+.+||+|||+|++|+++|..|...++ .++.++ |.++++++.... .+ ....++..+.+++||+|+
T Consensus 6 k~~KI~IIGaG~VG~~lA~~l~~~~~---~el~L~-D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVv 81 (154)
T d1pzga1 6 RRKKVAMIGSGMIGGTMGYLCALREL---ADVVLY-DVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVI 81 (154)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTC---CEEEEE-CSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEE
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCC---ceEEEE-EeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEE
Confidence 45899999999999999999888886 289999 988866543321 11 122344456789999999
Q ss_pred EeeC----cc-----------------cHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 77 FSVK----PQ-----------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 77 l~v~----~~-----------------~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
++.. |. .++++.+++..+ .|+.+++..++++.
T Consensus 82 itag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~-~p~aiviivsNPvd 134 (154)
T d1pzga1 82 VTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKY-CPKTFIIVVTNPLD 134 (154)
T ss_dssp ECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECCSSHH
T ss_pred EecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhc-CCCcEEEEeCCcHH
Confidence 9862 11 144445555544 47778888878764
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=98.67 E-value=1.4e-08 Score=79.44 Aligned_cols=104 Identities=12% Similarity=0.134 Sum_probs=74.6
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCc-ccH
Q 024016 6 IPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVV 84 (274)
Q Consensus 6 ~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~-~~~ 84 (274)
.....++|||||+|++|+.+++.|..-|. +|++| ++.+.... ...... .+..++++.||+|++++|. +..
T Consensus 41 ~~l~~ktvgIiG~G~IG~~va~~l~~fg~----~v~~~-d~~~~~~~---~~~~~~-~~l~~l~~~~D~v~~~~plt~~T 111 (199)
T d1dxya1 41 KELGQQTVGVMGTGHIGQVAIKLFKGFGA----KVIAY-DPYPMKGD---HPDFDY-VSLEDLFKQSDVIDLHVPGIEQN 111 (199)
T ss_dssp CCGGGSEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSCCSSC---CTTCEE-CCHHHHHHHCSEEEECCCCCGGG
T ss_pred ccccceeeeeeecccccccccccccccce----eeecc-CCccchhh---hcchhH-HHHHHHHHhcccceeeecccccc
Confidence 44556899999999999999999988887 99999 98754321 122333 4678889999999999983 334
Q ss_pred HHHH-HHhccccCCCCEEEEecCC--CCHHHHHHhhC
Q 024016 85 KDVA-MQIRPLLSRKKLLVSVAAG--VKLKDLQEWTG 118 (274)
Q Consensus 85 ~~v~-~~i~~~l~~~~~vis~~~g--~~~~~l~~~~~ 118 (274)
+.++ .+....++++.++|.++-| +..+.+.+.+.
T Consensus 112 ~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~ 148 (199)
T d1dxya1 112 THIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLK 148 (199)
T ss_dssp TTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred cccccHHHhhccCCceEEEecccHhhhhhHHHHHHHh
Confidence 4444 2344557899999988744 33456666564
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=98.66 E-value=1.8e-07 Score=70.17 Aligned_cols=97 Identities=15% Similarity=0.170 Sum_probs=67.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH----H----cC--ceeccCchhhccCCCEEEEe
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S----IG--VKVLSDNNAVVEYSDVVVFS 78 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~----~----~g--~~~~~~~~~~~~~aDiIil~ 78 (274)
...||+|||+|++|++++..|...|++. ++.++ |+++++++... . .+ ........+.+++||+|+++
T Consensus 19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~--ElvLi-D~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVit 95 (160)
T d1i0za1 19 PNNKITVVGVGQVGMACAISILGKSLAD--ELALV-DVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVT 95 (160)
T ss_dssp CSSEEEEECCSHHHHHHHHHHHHTTCCS--EEEEE-CSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEEC
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCCc--EEEEE-EeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEe
Confidence 3469999999999999999999999854 89999 99987763222 1 11 12233445668899999997
Q ss_pred e--C--cc------------cHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 79 V--K--PQ------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 79 v--~--~~------------~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
. | +. .++++..++... .++.+++-+++++.
T Consensus 96 Ag~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~-~p~aiiivvtNPvD 141 (160)
T d1i0za1 96 AGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY-SPDCIIIVVSNPVD 141 (160)
T ss_dssp CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHH
T ss_pred cCCccccCcchHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeCCchH
Confidence 6 2 21 233444555554 57778888878765
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=98.65 E-value=1.5e-07 Score=69.42 Aligned_cols=95 Identities=21% Similarity=0.282 Sum_probs=65.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH----H------cCcee-ccCchhhccCCCEEEEee
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE----S------IGVKV-LSDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~----~------~g~~~-~~~~~~~~~~aDiIil~v 79 (274)
|||+|||+|++|++++..|...|.. .++.++ |+++++.+... . ...++ .++..+.+++||+|+++.
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~--~el~L~-Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvita 77 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLA--RELVLL-DVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITA 77 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCC--SEEEEE-CSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCC--ceEEEe-ccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEE
Confidence 6999999999999999999998863 389999 99887654221 1 12232 234566789999999996
Q ss_pred --C--cc------------cHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 80 --K--PQ------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 80 --~--~~------------~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
| +. .++++.+.+..+ .|+.+++-.++++.
T Consensus 78 g~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~-~p~aivivvtNPvd 122 (142)
T d1guza1 78 GLPRKPGMTREDLLMKNAGIVKEVTDNIMKH-SKNPIIIVVSNPLD 122 (142)
T ss_dssp SCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CSSCEEEECCSSHH
T ss_pred ecCCCCCCchHHHHHHHHHHHHHHHHHhhcc-CCCeEEEEecCChH
Confidence 2 21 133444455544 47778887777654
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=98.62 E-value=2e-07 Score=70.64 Aligned_cols=100 Identities=16% Similarity=0.163 Sum_probs=68.0
Q ss_pred CeEEEEcccHHHHH-HHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCc-eeccCchhhcc-CCCEEEEeeCcccHHH
Q 024016 11 FILGFIGAGKMAES-IAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGV-KVLSDNNAVVE-YSDVVVFSVKPQVVKD 86 (274)
Q Consensus 11 ~~IgiIG~G~mG~~-~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~-~aDiIil~v~~~~~~~ 86 (274)
+||||||+|.||.. ....|.+.+. .++.++ ++++++.+.+.+ .+. ..+++..++++ +.|+|++|+|+....+
T Consensus 2 irvgiiG~G~~~~~~~~~~l~~~~~---~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~~~H~~ 77 (167)
T d1xeaa1 2 LKIAMIGLGDIAQKAYLPVLAQWPD---IELVLC-TRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHST 77 (167)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTT---EEEEEE-CSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCC---cEEEEE-ECCHHHHHHHHHhcccccccccHHHhcccccceeccccccccccc
Confidence 69999999999976 4556655433 267788 999999988877 565 35567777665 6799999999998877
Q ss_pred HHHHhccccCCCCEEEEecCCCCHHHHHHh
Q 024016 87 VAMQIRPLLSRKKLLVSVAAGVKLKDLQEW 116 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~~g~~~~~l~~~ 116 (274)
++...... .. .+++.---+.+.+...+.
T Consensus 78 ~~~~al~~-gk-~V~~EKP~~~~~~e~~~l 105 (167)
T d1xeaa1 78 LAAFFLHL-GI-PTFVDKPLAASAQECENL 105 (167)
T ss_dssp HHHHHHHT-TC-CEEEESCSCSSHHHHHHH
T ss_pred cccccccc-cc-ccccCCCCcCCHHHHHHH
Confidence 77665432 11 244432223445554443
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.61 E-value=1.3e-07 Score=72.84 Aligned_cols=99 Identities=13% Similarity=0.298 Sum_probs=69.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEE-EEeCCCHHHHHHHHH-cC----ceeccCchhhcc--CCCEEEEeeCc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFES-IG----VKVLSDNNAVVE--YSDVVVFSVKP 81 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~-v~~~r~~~~~~~l~~-~g----~~~~~~~~~~~~--~aDiIil~v~~ 81 (274)
++||||||+|.||...+..+.+... .+|+ ++ ++++++++.+.+ .+ .++.++..++++ +.|+|++|+|+
T Consensus 1 kiki~iIG~G~~g~~~~~~l~~~~~---~~i~ai~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~ 76 (184)
T d1ydwa1 1 QIRIGVMGCADIARKVSRAIHLAPN---ATISGVA-SRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPT 76 (184)
T ss_dssp CEEEEEESCCTTHHHHHHHHHHCTT---EEEEEEE-CSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCG
T ss_pred CeEEEEEcCCHHHHHHHHHHHhCCC---CEEEEEE-eCCccccccchhccccccceeecCcHHHhhhccccceeeecccc
Confidence 3699999999999999999877532 1666 55 999999888766 44 456778888764 57999999999
Q ss_pred ccHHHHHHHhccccCCCCEEEEecCC--CCHHHHHHh
Q 024016 82 QVVKDVAMQIRPLLSRKKLLVSVAAG--VKLKDLQEW 116 (274)
Q Consensus 82 ~~~~~v~~~i~~~l~~~~~vis~~~g--~~~~~l~~~ 116 (274)
..-.+.+.... ..|+-|+ +-.+ .+.+...+.
T Consensus 77 ~~h~~~~~~~l---~~g~~v~-~EKP~~~~~~e~~~l 109 (184)
T d1ydwa1 77 SLHVEWAIKAA---EKGKHIL-LEKPVAMNVTEFDKI 109 (184)
T ss_dssp GGHHHHHHHHH---TTTCEEE-ECSSCSSSHHHHHHH
T ss_pred hhhcchhhhhh---hccceee-cccccccCHHHHHHH
Confidence 88766665544 3444444 3333 344554443
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.60 E-value=4.2e-08 Score=75.88 Aligned_cols=73 Identities=18% Similarity=0.255 Sum_probs=52.8
Q ss_pred CeEEEE-cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc-------CceeccCchhhccCCCEEEEeeCcc
Q 024016 11 FILGFI-GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI-------GVKVLSDNNAVVEYSDVVVFSVKPQ 82 (274)
Q Consensus 11 ~~IgiI-G~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~-------g~~~~~~~~~~~~~aDiIil~v~~~ 82 (274)
|||+|| |+|.||++||+.|.++|| +|.+| +|++++++.+.+. ......+........+....+....
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~----~V~l~-~R~~e~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGH----EIVVG-SRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIPWE 75 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC----EEEEE-ESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEECSCHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHHHHhcCCCceEEeeccccccchhhhhhhheeee
Confidence 799999 899999999999999999 99999 9999998877651 1112223333344556666666655
Q ss_pred cHHHHH
Q 024016 83 VVKDVA 88 (274)
Q Consensus 83 ~~~~v~ 88 (274)
...+.+
T Consensus 76 ~~~~~~ 81 (212)
T d1jaya_ 76 HAIDTA 81 (212)
T ss_dssp HHHHHH
T ss_pred ccchHH
Confidence 544444
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=98.60 E-value=3.8e-08 Score=75.10 Aligned_cols=87 Identities=13% Similarity=0.099 Sum_probs=62.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEE-EEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~-v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~ 86 (274)
|+++||||||+|+||+..+..|.+... .+++ ++ +|++++.. ..+.....+..+...+.|+|++|+|+....+
T Consensus 1 M~kirvgiiG~G~ig~~~~~~l~~~~~---~elvav~-~~~~~~~~---~~~~~~~~~~~~~~~~~D~Vvi~tp~~~h~~ 73 (170)
T d1f06a1 1 MTNIRVAIVGYGNLGRSVEKLIAKQPD---MDLVGIF-SRRATLDT---KTPVFDVADVDKHADDVDVLFLCMGSATDIP 73 (170)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHTTCSS---EEEEEEE-ESSSCCSS---SSCEEEGGGGGGTTTTCSEEEECSCTTTHHH
T ss_pred CCcceEEEECChHHHHHHHHHHHhCCC---cEEEEEE-eccccccc---ccccccchhhhhhccccceEEEeCCCcccHH
Confidence 557899999999999999999976532 2554 55 88865432 2455555666777789999999999988766
Q ss_pred HHHHhccccCCCCEEEEe
Q 024016 87 VAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~ 104 (274)
+.... +..|+-+|.+
T Consensus 74 ~a~~a---L~aG~~vv~~ 88 (170)
T d1f06a1 74 EQAPK---FAQFACTVDT 88 (170)
T ss_dssp HHHHH---HTTTSEEECC
T ss_pred HHHHH---HHCCCcEEEe
Confidence 65443 4567666644
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.58 E-value=1.2e-07 Score=69.93 Aligned_cols=95 Identities=19% Similarity=0.283 Sum_probs=64.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH----HHH----cC--cee-ccCchhhccCCCEEEEee
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FES----IG--VKV-LSDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~----l~~----~g--~~~-~~~~~~~~~~aDiIil~v 79 (274)
|||+|||+|++|+++|..|..+|.+. ++.++ |+++++++- +.. .+ .++ ..+..+.++++|+|+++.
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~--elvL~-Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~~~~~adiVvita 77 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVD--EIALV-DIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTA 77 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCS--EEEEE-CSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGGTTCSEEEECC
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCc--eEEEE-ecccchhhHHHHHHhhhccccCCCCccccCCCHHHhccccEEEEec
Confidence 79999999999999999999888743 89999 999977542 221 11 122 223346789999999986
Q ss_pred C----cc------------cHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 80 K----PQ------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 80 ~----~~------------~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
. +. .++++.+.+..+ .|+.+++..++++.
T Consensus 78 g~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~-~p~aivivvtNPvD 122 (142)
T d1ojua1 78 GLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVTNPMD 122 (142)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECSSSHH
T ss_pred cccCCCCCchHHHHHHhhHHHHHHHHHHHhh-CCCcEEEEecCChH
Confidence 2 21 122333444444 57788888888654
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.53 E-value=3e-07 Score=68.92 Aligned_cols=97 Identities=12% Similarity=0.223 Sum_probs=64.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH----HHH----cC--ceeccCchhhccCCCEEEEe
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FES----IG--VKVLSDNNAVVEYSDVVVFS 78 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~----l~~----~g--~~~~~~~~~~~~~aDiIil~ 78 (274)
+..||+|||+|++|+++|..|...|+.. ++.++ |+++++++. |.. .+ .....+..+.+.+||+|+++
T Consensus 18 ~~~KI~IIGaG~VG~~~A~~l~~~~l~~--elvL~-D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~~~adivvit 94 (159)
T d2ldxa1 18 SRCKITVVGVGDVGMACAISILLKGLAD--ELALV-DADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVSANSKLVIIT 94 (159)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTSCS--EEEEE-CSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGGTTEEEEEEC
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCCC--EEEEE-eCCchhhhccHHHHhCcchhcCCCeEEeccchhhhccccEEEEe
Confidence 3468999999999999999999998743 79999 999876542 322 11 12233345667899999998
Q ss_pred eC----cc------------cHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 79 VK----PQ------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 79 v~----~~------------~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
.. +. .++++...+..+ .|+.+++..++++.
T Consensus 95 ag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~-~p~~ivivvtNPvD 140 (159)
T d2ldxa1 95 AGARMVSGQTRLDLLQRNVAIMKAIVPGVIQN-SPDCKIIVVTNPVD 140 (159)
T ss_dssp CSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHH-STTCEEEECSSSHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHHhcc-CCCeEEEEeCCcHH
Confidence 62 11 122222333333 57778888877654
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=98.50 E-value=8e-07 Score=65.38 Aligned_cols=95 Identities=21% Similarity=0.340 Sum_probs=64.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH----HHH----cC-ce-eccCchhhccCCCEEEEee-
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FES----IG-VK-VLSDNNAVVEYSDVVVFSV- 79 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~----l~~----~g-~~-~~~~~~~~~~~aDiIil~v- 79 (274)
.||+|||+|++|+++|..|...|..+ ++.++ |+++++++. +.. .+ .. ...+..+.+++||+|+++.
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~--ElvL~-D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~~daDvVVitaG 78 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAR--EIVLE-DIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAG 78 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCS--EEEEE-CSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCc--EEEEE-EeccccchhHHHHHHhccccCCCceeecCCCHHHhhCCcEEEEecc
Confidence 48999999999999999999999743 89999 999877542 222 11 12 2234456688999999986
Q ss_pred -C--cc------------cHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 80 -K--PQ------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 80 -~--~~------------~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
| +. .++++..++..+ .|+.+++-.++++.
T Consensus 79 ~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~-~p~ai~ivvtNPvD 122 (143)
T d1llda1 79 PRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPVD 122 (143)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHH
T ss_pred cccCCCCchhhhhhhhHHHHHHHHHHHHhh-CCCeEEEEeCCchH
Confidence 2 21 122333445544 56778877777765
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=98.50 E-value=4.3e-07 Score=66.87 Aligned_cols=95 Identities=18% Similarity=0.195 Sum_probs=60.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH----HHH-----cCceeccCchhhccCCCEEEEee--
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA----FES-----IGVKVLSDNNAVVEYSDVVVFSV-- 79 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~----l~~-----~g~~~~~~~~~~~~~aDiIil~v-- 79 (274)
.||+|||+|++|++++..|...+..+ ++.++ |+++++++. +.. ..........+.+++||+|+++.
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~--el~L~-D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~ 78 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTAN--ELVLI-DVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGA 78 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSS--EEEEE-CCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCC--EEEEE-eccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEeccc
Confidence 58999999999999999999998743 89999 998876432 221 01223333456688999999984
Q ss_pred C--ccc------------HHHHHHHhccccCCCCEEEEecCCCC
Q 024016 80 K--PQV------------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 80 ~--~~~------------~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
+ +.. ++++.+.+..+ .|+.+++-.++++.
T Consensus 79 ~~~~~~~r~~l~~~N~~i~~~i~~~i~~~-~p~ai~ivvtNPvd 121 (142)
T d1y6ja1 79 NRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVVSNPVD 121 (142)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEECSSSHH
T ss_pred ccCcCcchhHHhhHHHHHHHHHHHHhhcc-CCCceEEEecChHH
Confidence 2 211 22333444443 46778887777654
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=98.44 E-value=9.4e-07 Score=70.03 Aligned_cols=99 Identities=20% Similarity=0.232 Sum_probs=65.7
Q ss_pred CCeEEEEcccHHHHH-HHHHHHhCCCCCCCcEE-EEeCCCHHHHHHHHH-cCc-----eeccCchhhcc--CCCEEEEee
Q 024016 10 SFILGFIGAGKMAES-IAKGVAKSGVLPPDRIC-TAVHSNLKRRDAFES-IGV-----KVLSDNNAVVE--YSDVVVFSV 79 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~-~a~~L~~~g~~~~~~v~-v~~~r~~~~~~~l~~-~g~-----~~~~~~~~~~~--~aDiIil~v 79 (274)
..||||||+|.||.. +...+.+... .+|. ++ +|++++++.+.+ .|+ ..++|..++++ +.|+|++|+
T Consensus 33 ~iriaiIG~G~~~~~~~~~~~~~~~~---~~ivav~-d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~t 108 (221)
T d1h6da1 33 RFGYAIVGLGKYALNQILPGFAGCQH---SRIEALV-SGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIIL 108 (221)
T ss_dssp CEEEEEECCSHHHHHTHHHHTTTCSS---EEEEEEE-CSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECS
T ss_pred CEEEEEEcCcHHHHHHHHHHHHhCCC---ceEEEEe-cCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeecc
Confidence 359999999999974 5555554321 2666 55 999999988876 554 34577788776 579999999
Q ss_pred CcccHHHHHHHhccccCCCCEEEEecCC--CCHHHHHHh
Q 024016 80 KPQVVKDVAMQIRPLLSRKKLLVSVAAG--VKLKDLQEW 116 (274)
Q Consensus 80 ~~~~~~~v~~~i~~~l~~~~~vis~~~g--~~~~~l~~~ 116 (274)
|++...++...... .|+-|+. -++ .+.+...+.
T Consensus 109 p~~~H~~~~~~al~---~gk~v~~-EKPla~~~~e~~~l 143 (221)
T d1h6da1 109 PNSLHAEFAIRAFK---AGKHVMC-EKPMATSVADCQRM 143 (221)
T ss_dssp CGGGHHHHHHHHHH---TTCEEEE-CSSCCSSHHHHHHH
T ss_pred chhhhhhHHHHhhh---cchhhhc-CCCccCCHHHHHHH
Confidence 99887766655432 3444442 233 344554443
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=98.41 E-value=1.6e-06 Score=64.26 Aligned_cols=94 Identities=14% Similarity=0.179 Sum_probs=64.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--------cC--cee-ccCchhhccCCCEEEEee
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------IG--VKV-LSDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~--------~g--~~~-~~~~~~~~~~aDiIil~v 79 (274)
.||+|||+|.+|++++..|...+. .++.++ |+++++++.... .+ ..+ ..+..+.++++|+|+++.
T Consensus 4 ~KI~IIGaG~VG~~~a~~l~~~~l---~el~L~-Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvita 79 (150)
T d1t2da1 4 AKIVLVGSGMIGGVMATLIVQKNL---GDVVLF-DIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTA 79 (150)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC---CEEEEE-CSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC---CeEEEE-eccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEec
Confidence 599999999999999988887775 389999 998876543321 12 122 234456789999999986
Q ss_pred C----cc-----------------cHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 80 K----PQ-----------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 80 ~----~~-----------------~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
- |. .++++.+.+..+ .|+.+++-.++++.
T Consensus 80 g~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~-~p~aivivvtNPvD 129 (150)
T d1t2da1 80 GFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN-CPNAFIIVVTNPVD 129 (150)
T ss_dssp SCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSSHH
T ss_pred ccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhc-CCCeEEEEecCchH
Confidence 2 21 133444445544 57788888878765
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=98.37 E-value=1.9e-06 Score=63.26 Aligned_cols=93 Identities=20% Similarity=0.215 Sum_probs=63.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----------cCc--eeccCchhhccCCCEEEEe
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----------IGV--KVLSDNNAVVEYSDVVVFS 78 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~----------~g~--~~~~~~~~~~~~aDiIil~ 78 (274)
+||+|||+|++|+++|..|...+. .++.++ |.++++++.... ... ....+ .+.++++|+|+++
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l---~dl~l~-D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d-~~~~~~advvvit 76 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKEL---GDIVLL-DIVEGVPQGKALDLYEASPIEGFDVRVTGTNN-YADTANSDVIVVT 76 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTC---SEEEEE-CSSSSHHHHHHHHHHTTHHHHTCCCCEEEESC-GGGGTTCSEEEEC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCc---ceEEEE-eeccccchhHHHHhhccccccCCCCEEEecCc-HHHhcCCCEEEEe
Confidence 599999999999999999988876 278899 988766433221 112 22334 4557899999999
Q ss_pred eC----cc------------cHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 79 VK----PQ------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 79 v~----~~------------~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
.. +. .++++.+++..+ .|+.+++-.++++.
T Consensus 77 ag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~-~p~aivivvtNPvD 122 (142)
T d1uxja1 77 SGAPRKPGMSREDLIKVNADITRACISQAAPL-SPNAVIIMVNNPLD 122 (142)
T ss_dssp CSCC---------CHHHHHHHHHHHHHHHGGG-CTTCEEEECSSSHH
T ss_pred eeccCCcCcchhHHHhHHHHHHHHHHHHHhcc-CCCceEEEeCCchH
Confidence 72 11 123445556554 56778887777654
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.34 E-value=1.1e-06 Score=64.80 Aligned_cols=94 Identities=15% Similarity=0.157 Sum_probs=66.0
Q ss_pred eEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cC-----c---eeccCchhhccCCCEEEEee--
Q 024016 12 ILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG-----V---KVLSDNNAVVEYSDVVVFSV-- 79 (274)
Q Consensus 12 ~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g-----~---~~~~~~~~~~~~aDiIil~v-- 79 (274)
||+|||+ |++|+++|..|...|.+. ++.++ |.++.+.+.+.- +. . ....+..+.+++||+|+++-
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~--elvLi-Di~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~ 78 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVS--RLTLY-DIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGV 78 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCS--EEEEE-ESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSC
T ss_pred eEEEECCCChHHHHHHHHHHhCCccc--eEEEE-eccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCc
Confidence 8999995 999999999999988744 89999 988766544322 11 1 11234467789999999985
Q ss_pred C--cc------------cHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 80 K--PQ------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 80 ~--~~------------~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
| +. .++++.+++..+ .|+.+++-.++++.
T Consensus 79 ~~~~g~sR~~ll~~N~~i~~~i~~~i~~~-~p~~iiivvtNPvD 121 (144)
T d1mlda1 79 PRKPGMTRDDLFNTNATIVATLTAACAQH-CPDAMICIISNPVN 121 (144)
T ss_dssp CCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSCHH
T ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHHhc-CCCeEEEEecCchh
Confidence 2 21 244555666665 67778888878765
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=98.34 E-value=1e-06 Score=65.93 Aligned_cols=94 Identities=11% Similarity=0.100 Sum_probs=57.0
Q ss_pred CCCeEEEEcccHHHHH-HHHHHHhCCCCCCCcEEEEeCCCHHHH--HHHHHcCceeccC-chhh-----ccCCCEEEEee
Q 024016 9 ESFILGFIGAGKMAES-IAKGVAKSGVLPPDRICTAVHSNLKRR--DAFESIGVKVLSD-NNAV-----VEYSDVVVFSV 79 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~-~a~~L~~~g~~~~~~v~v~~~r~~~~~--~~l~~~g~~~~~~-~~~~-----~~~aDiIil~v 79 (274)
+++||||||+|.+|.- +.+.|.+..+ .++...++|+++.. +...+.|+....+ .+++ ..+.|+||+||
T Consensus 3 kkirvaIIGaG~ig~~~~~~~l~~~~~---~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~AT 79 (157)
T d1nvmb1 3 QKLKVAIIGSGNIGTDLMIKVLRNAKY---LEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDAT 79 (157)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHCSS---EEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECS
T ss_pred CCcEEEEEcCcHHHHHHHHHHHhhCCc---ceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcC
Confidence 5679999999999985 5555544433 25654448886532 3344477765433 2222 23689999999
Q ss_pred CcccHHHHHHHhccccCCCCEEEEecC
Q 024016 80 KPQVVKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 80 ~~~~~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
|...-.+-... ....+.|..+|+.++
T Consensus 80 pag~h~~~~~~-~~aa~~G~~VID~s~ 105 (157)
T d1nvmb1 80 SASAHVQNEAL-LRQAKPGIRLIDLTP 105 (157)
T ss_dssp CHHHHHHHHHH-HHHHCTTCEEEECST
T ss_pred CchhHHHhHHH-HHHHHcCCEEEEccc
Confidence 97643221111 112467889998765
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=98.34 E-value=1.1e-06 Score=66.23 Aligned_cols=112 Identities=12% Similarity=0.150 Sum_probs=69.7
Q ss_pred CCCeEEEEcccHHHHHHH-HHHHhC-CCCCCCcEEEEeCCCHHHHHHHHH--------cC----ceeccCchhhccCCCE
Q 024016 9 ESFILGFIGAGKMAESIA-KGVAKS-GVLPPDRICTAVHSNLKRRDAFES--------IG----VKVLSDNNAVVEYSDV 74 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a-~~L~~~-g~~~~~~v~v~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~aDi 74 (274)
+..||+|||+|..|.+.+ ..++.. -.++..+|.++ |.++++++.... .+ +...++..+++++||+
T Consensus 2 k~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~-Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~ 80 (167)
T d1u8xx1 2 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLY-DNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDF 80 (167)
T ss_dssp CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEE-CSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSE
T ss_pred CCceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEE-cCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCE
Confidence 457999999999887643 333332 11122379999 999988753221 12 2345677888999999
Q ss_pred EEEeeCcc------------------------------------cHHHHHHHhccccCCCCEEEEecCCCCH--HHHHHh
Q 024016 75 VVFSVKPQ------------------------------------VVKDVAMQIRPLLSRKKLLVSVAAGVKL--KDLQEW 116 (274)
Q Consensus 75 Iil~v~~~------------------------------------~~~~v~~~i~~~l~~~~~vis~~~g~~~--~~l~~~ 116 (274)
||++.-.. .+.++.+.+... .|+.+++..++++.. ..+.+.
T Consensus 81 Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~-~P~A~li~~TNPvdv~t~~~~k~ 159 (167)
T d1u8xx1 81 VMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKY-SPDAWMLNYSNPAAIVAEATRRL 159 (167)
T ss_dssp EEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSCHHHHHHHHHHH
T ss_pred EEECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhh-CCCeEEEEeCCHHHHHHHHHHHH
Confidence 99998431 133444445444 577888888887653 344444
Q ss_pred hCCCce
Q 024016 117 TGHSRF 122 (274)
Q Consensus 117 ~~~~~~ 122 (274)
.|..++
T Consensus 160 ~P~~rV 165 (167)
T d1u8xx1 160 RPNSKI 165 (167)
T ss_dssp STTCCE
T ss_pred CCcccc
Confidence 554444
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=98.34 E-value=9.5e-07 Score=67.06 Aligned_cols=93 Identities=12% Similarity=0.192 Sum_probs=65.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc----C-ceeccCchhhccCCCEEEEeeCcc
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI----G-VKVLSDNNAVVEYSDVVVFSVKPQ 82 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~----g-~~~~~~~~~~~~~aDiIil~v~~~ 82 (274)
.+.++|.|+|+|-.+++++..|.+.|. +|+++ +|++++++.+.+. + +...........++|+||-|+|..
T Consensus 16 ~~~k~vlIlGaGGaarai~~al~~~g~----~i~I~-nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~dliIN~Tp~G 90 (170)
T d1nyta1 16 RPGLRILLIGAGGASRGVLLPLLSLDC----AVTIT-NRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSG 90 (170)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCG
T ss_pred CCCCEEEEECCcHHHHHHHHHhcccce----EEEec-cchHHHHHHHHHHHhhcccccccccccccccccceeecccccC
Confidence 356799999999999999999999997 89999 9999999888761 2 233222222245789999999866
Q ss_pred cHHHHHHHhccccCCCCEEEEec
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~~ 105 (274)
...+....-...++++.+++++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~v~D~v 113 (170)
T d1nyta1 91 ISGDIPAIPSSLIHPGIYCYDMF 113 (170)
T ss_dssp GGTCCCCCCGGGCCTTCEEEESC
T ss_pred cccCCCCCcHHHhccCcEEEEee
Confidence 43221111122356777777764
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=98.34 E-value=1.5e-06 Score=65.92 Aligned_cols=71 Identities=21% Similarity=0.261 Sum_probs=49.0
Q ss_pred CCeEEEEcccHHHHHH--HHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--------c--C--ceeccCchhhccCCCEE
Q 024016 10 SFILGFIGAGKMAESI--AKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------I--G--VKVLSDNNAVVEYSDVV 75 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~--a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~--------~--g--~~~~~~~~~~~~~aDiI 75 (274)
.|||+|||+|+.|.++ ...|+....+...++.++ |+++++++.... . . +...+|..+++++||+|
T Consensus 2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~-Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~V 80 (171)
T d1obba1 2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLM-DIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFV 80 (171)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEE-CSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEE-eCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeE
Confidence 4799999999999764 334443222122389999 999988654221 1 2 33456778899999999
Q ss_pred EEeeCc
Q 024016 76 VFSVKP 81 (274)
Q Consensus 76 il~v~~ 81 (274)
+.+...
T Consensus 81 v~~~~~ 86 (171)
T d1obba1 81 INTAMV 86 (171)
T ss_dssp EECCCT
T ss_pred eeeccc
Confidence 998743
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=98.29 E-value=3.6e-06 Score=63.22 Aligned_cols=69 Identities=12% Similarity=0.091 Sum_probs=48.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC--CCCCcEEEEeCCCHHHHHHHHH---------cCceeccCchhhccCCCEEEEee
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGV--LPPDRICTAVHSNLKRRDAFES---------IGVKVLSDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~--~~~~~v~v~~~r~~~~~~~l~~---------~g~~~~~~~~~~~~~aDiIil~v 79 (274)
|||+|||+|+.|.+++...+..+. ....++.++ |.++++.+.... ....+.++..+.+++||+|+++.
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~-Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita 79 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFY-DIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQF 79 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEE-CSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEE-ecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEec
Confidence 699999999999888754332111 122489999 999988764332 12345567778899999999987
Q ss_pred C
Q 024016 80 K 80 (274)
Q Consensus 80 ~ 80 (274)
-
T Consensus 80 ~ 80 (162)
T d1up7a1 80 R 80 (162)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=2e-06 Score=64.09 Aligned_cols=99 Identities=11% Similarity=0.135 Sum_probs=72.1
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCc-ccH-H
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVV-K 85 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~-~~~-~ 85 (274)
+..++++|+|.|.+|..+|+.+..-|- +|.+| +++|-++-+..-.|..+. +..+++..+|++++++.. +.+ .
T Consensus 22 l~Gk~v~V~GyG~iG~g~A~~~rg~G~----~V~v~-e~dp~~al~A~~dG~~v~-~~~~a~~~adivvtaTGn~~vI~~ 95 (163)
T d1li4a1 22 IAGKVAVVAGYGDVGKGCAQALRGFGA----RVIIT-EIDPINALQAAMEGYEVT-TMDEACQEGNIFVTTTGCIDIILG 95 (163)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTTCEEC-CHHHHTTTCSEEEECSSCSCSBCH
T ss_pred ecCCEEEEeccccccHHHHHHHHhCCC----eeEee-ecccchhHHhhcCceEee-ehhhhhhhccEEEecCCCccchhH
Confidence 455799999999999999999999998 99999 999866443333677764 577889999999999964 332 2
Q ss_pred HHHHHhccccCCCCEEEEec---CCCCHHHHHHh
Q 024016 86 DVAMQIRPLLSRKKLLVSVA---AGVKLKDLQEW 116 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~---~g~~~~~l~~~ 116 (274)
+-+ +.++++.++.+.. .-+..+.+.+.
T Consensus 96 eh~----~~MKdgaIL~N~Ghfd~EId~~~L~~~ 125 (163)
T d1li4a1 96 RHF----EQMKDDAIVCNIGHFDVEIDVKWLNEN 125 (163)
T ss_dssp HHH----TTCCTTEEEEECSSSTTSBCHHHHHHH
T ss_pred HHH----HhccCCeEEEEeccccceecHHHHhhc
Confidence 333 3467787766542 23445666653
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=98.25 E-value=6.9e-07 Score=67.91 Aligned_cols=93 Identities=11% Similarity=0.155 Sum_probs=60.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c----CceeccCchhhccCCCEEEEeeCcc
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I----GVKVLSDNNAVVEYSDVVVFSVKPQ 82 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~----g~~~~~~~~~~~~~aDiIil~v~~~ 82 (274)
.+.++|.|+|+|.++.+++..|.+.+- +|+++ +|+.++++.+.+ . .+...........++|+||-|+|..
T Consensus 16 ~~~k~vlIlGaGGaarai~~aL~~~~~----~i~I~-nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~g 90 (171)
T d1p77a1 16 RPNQHVLILGAGGATKGVLLPLLQAQQ----NIVLA-NRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAG 90 (171)
T ss_dssp CTTCEEEEECCSHHHHTTHHHHHHTTC----EEEEE-ESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC-
T ss_pred CCCCEEEEECCcHHHHHHHHHHcccCc----eeeec-cchHHHHHHHHHHHhhccccchhhhccccccccceeeeccccc
Confidence 356799999999999999999988654 89999 999999988876 1 2222222223356899999999876
Q ss_pred cHHHHHHHhccccCCCCEEEEec
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~~ 105 (274)
.-.+........++++.+++++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~D~v 113 (171)
T d1p77a1 91 LSGGTASVDAEILKLGSAFYDMQ 113 (171)
T ss_dssp ------CCCHHHHHHCSCEEESC
T ss_pred ccccccchhhhhhcccceeeeee
Confidence 43322211112233455666653
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.23 E-value=2.7e-06 Score=64.35 Aligned_cols=112 Identities=13% Similarity=0.209 Sum_probs=68.0
Q ss_pred CCeEEEEcccHHHH--HHHHHHHhCCCCCCCcEEEEeCCCHHH--HHHHH--------HcCc----eeccCchhhccCCC
Q 024016 10 SFILGFIGAGKMAE--SIAKGVAKSGVLPPDRICTAVHSNLKR--RDAFE--------SIGV----KVLSDNNAVVEYSD 73 (274)
Q Consensus 10 ~~~IgiIG~G~mG~--~~a~~L~~~g~~~~~~v~v~~~r~~~~--~~~l~--------~~g~----~~~~~~~~~~~~aD 73 (274)
++||.|||+|+.|. .++.-+.....++..++.++ |+++++ .+.+. ..+. ...+|..+.+++||
T Consensus 1 k~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~-Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaD 79 (169)
T d1s6ya1 1 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLV-DIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGAD 79 (169)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEE-CCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCS
T ss_pred CcEEEEECCChhhHHHHHHHHHHhccccCCCEEEEE-cCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCC
Confidence 36999999997764 34444433221122388999 988744 33222 1222 24566678889999
Q ss_pred EEEEeeCccc------------------------------------HHHHHHHhccccCCCCEEEEecCCCCH--HHHHH
Q 024016 74 VVVFSVKPQV------------------------------------VKDVAMQIRPLLSRKKLLVSVAAGVKL--KDLQE 115 (274)
Q Consensus 74 iIil~v~~~~------------------------------------~~~v~~~i~~~l~~~~~vis~~~g~~~--~~l~~ 115 (274)
+|+++..... ++++.+.+..+ .|+.+++..++++.. ..+.+
T Consensus 80 vVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~-~pda~~i~vtNPvdv~t~~~~k 158 (169)
T d1s6ya1 80 FVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEEL-CPDAWLINFTNPAGMVTEAVLR 158 (169)
T ss_dssp EEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHHHHHHHHHH
T ss_pred EEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhc-CCCeEEEEeCChHHHHHHHHHH
Confidence 9999984321 34555556554 588888888887653 33444
Q ss_pred hhCCCceE
Q 024016 116 WTGHSRFI 123 (274)
Q Consensus 116 ~~~~~~~~ 123 (274)
..|..+++
T Consensus 159 ~~p~~kvi 166 (169)
T d1s6ya1 159 YTKQEKVV 166 (169)
T ss_dssp HCCCCCEE
T ss_pred HCCCCCEE
Confidence 45434444
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=4e-07 Score=71.24 Aligned_cols=68 Identities=13% Similarity=0.161 Sum_probs=53.4
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec-------cCchhhccCCCEEEEee
Q 024016 8 AESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-------SDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 8 ~~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~-------~~~~~~~~~aDiIil~v 79 (274)
|.++||.|+| .|.+|+++++.|+++|| +|+++ .|++++.......++++. ++..++++++|+||.++
T Consensus 1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~----~V~~~-~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~ 75 (205)
T d1hdoa_ 1 MAVKKIAIFGATGQTGLTTLAQAVQAGY----EVTVL-VRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLL 75 (205)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCcC----EEEEE-EcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEe
Confidence 5678999998 69999999999999999 99999 999988655444455432 22345678999999987
Q ss_pred C
Q 024016 80 K 80 (274)
Q Consensus 80 ~ 80 (274)
.
T Consensus 76 g 76 (205)
T d1hdoa_ 76 G 76 (205)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=98.18 E-value=2.5e-06 Score=64.41 Aligned_cols=67 Identities=16% Similarity=0.248 Sum_probs=54.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKP 81 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~ 81 (274)
+.++|.|||+|.++++++..|.+.|. .+|+++ +|++++++.+++ .+.....+.. ..++|+||=|+|.
T Consensus 16 ~~~~vlIlGaGGaarai~~aL~~~g~---~~I~I~-nR~~~ka~~L~~~~~~~~~~~~~--~~~~DliINaTpi 83 (167)
T d1npya1 16 KNAKVIVHGSGGMAKAVVAAFKNSGF---EKLKIY-ARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSI 83 (167)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTTC---CCEEEE-CSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSST
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC---CEEEEe-cccHHHHHHHHHhhhhhhhhccc--ccchhhheecccc
Confidence 34689999999999999999999986 379999 999999999887 5554433322 3578999999884
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=98.16 E-value=4.2e-06 Score=66.87 Aligned_cols=85 Identities=16% Similarity=0.197 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCeEEEEcccHHH----HHHHHHHHhC--CCCCCCcEE-EEeCCCHHHHHHHHH-cC---ceeccCchhhc
Q 024016 1 MDAFPIPAESFILGFIGAGKMA----ESIAKGVAKS--GVLPPDRIC-TAVHSNLKRRDAFES-IG---VKVLSDNNAVV 69 (274)
Q Consensus 1 ~~~~~~~~~~~~IgiIG~G~mG----~~~a~~L~~~--g~~~~~~v~-v~~~r~~~~~~~l~~-~g---~~~~~~~~~~~ 69 (274)
|+|+|.. +.+||||||+|.+| ......+.+. ++ +|+ ++ ++++++++.+.+ .+ ...+++..+++
T Consensus 8 ~~~~~~~-k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~----~ivav~-d~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (237)
T d2nvwa1 8 LSTVPSS-RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQF----QIVALY-NPTLKSSLQTIEQLQLKHATGFDSLESFA 81 (237)
T ss_dssp GGSSGGG-CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTE----EEEEEE-CSCHHHHHHHHHHTTCTTCEEESCHHHHH
T ss_pred cccCCCC-CCeEEEEEecCccccHHHHHHHHHHHhcCCCe----EEEEEE-cCCHHHHHHHHHhcccccceeecchhhcc
Confidence 4566654 45799999999854 4444455543 34 666 56 999999887766 44 35567888876
Q ss_pred c--CCCEEEEeeCcccHHHHHHHh
Q 024016 70 E--YSDVVVFSVKPQVVKDVAMQI 91 (274)
Q Consensus 70 ~--~aDiIil~v~~~~~~~v~~~i 91 (274)
+ +.|+|++|+|+....+.....
T Consensus 82 ~~~~iD~V~i~tp~~~h~~~~~~a 105 (237)
T d2nvwa1 82 QYKDIDMIVVSVKVPEHYEVVKNI 105 (237)
T ss_dssp HCTTCSEEEECSCHHHHHHHHHHH
T ss_pred cccccceeeccCCCcchhhHHHHH
Confidence 5 578999999988766655443
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=98.15 E-value=1.2e-06 Score=73.49 Aligned_cols=91 Identities=15% Similarity=0.160 Sum_probs=67.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----cCc--eeccCchhhccCCCEEEEeeCc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IGV--KVLSDNNAVVEYSDVVVFSVKP 81 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-----~g~--~~~~~~~~~~~~aDiIil~v~~ 81 (274)
+..+++|||+|..+...+..+... + +..+|.+| +|++++.+++.+ .|+ ..+.+.+++++.||+|+.|+..
T Consensus 127 da~~l~iiG~G~QA~~~~~a~~~v-~-~i~~V~v~-~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Tas 203 (340)
T d1x7da_ 127 NARKMALIGNGAQSEFQALAFHKH-L-GIEEIVAY-DTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTAD 203 (340)
T ss_dssp TCCEEEEECCSTTHHHHHHHHHHH-S-CCCEEEEE-CSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCC
T ss_pred CCceEEEEcccHHHHHHHHHHhhh-c-ceeeeEEE-ecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeecccc
Confidence 457899999999999999888753 2 44699999 999998887765 354 4578889999999999999954
Q ss_pred ccHHHHHHHhccccCCCCEEEEe
Q 024016 82 QVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 82 ~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
..-..++. ...++||..|..+
T Consensus 204 ~s~~Pv~~--~~~l~pG~hI~ai 224 (340)
T d1x7da_ 204 KAYATIIT--PDMLEPGMHLNAV 224 (340)
T ss_dssp SSEEEEEC--GGGCCTTCEEEEC
T ss_pred CCCCcccc--hhhcCCCCEEeec
Confidence 43222222 1346888766654
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.15 E-value=8.2e-06 Score=59.91 Aligned_cols=95 Identities=19% Similarity=0.245 Sum_probs=60.8
Q ss_pred CeEEEEc-ccHHHHHHHHHHHh-CCCCCCCcEEEEeCCCHHHHH---HHHHc----Cce--eccCchhhccCCCEEEEee
Q 024016 11 FILGFIG-AGKMAESIAKGVAK-SGVLPPDRICTAVHSNLKRRD---AFESI----GVK--VLSDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 11 ~~IgiIG-~G~mG~~~a~~L~~-~g~~~~~~v~v~~~r~~~~~~---~l~~~----g~~--~~~~~~~~~~~aDiIil~v 79 (274)
|||+||| .|++|++++..|.. .+.. .++.++ |..+...- .+... ... ...+..+.++++|+||++-
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~--~el~L~-D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvita 77 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSG--SELSLY-DIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISA 77 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTT--CEEEEE-CSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCC--cEEEEe-cccccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECC
Confidence 6999999 59999999988754 3542 389999 88653211 22221 111 1233456788999999986
Q ss_pred --C--cc------------cHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 80 --K--PQ------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 80 --~--~~------------~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
| |. .++++.+++..+ .|+.+++-.++++.
T Consensus 78 G~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~-~p~aivivvtNPvD 122 (145)
T d2cmda1 78 GVRRKPGMDRSDLFNVNAGIVKNLVQQVAKT-CPKACIGIITNPVN 122 (145)
T ss_dssp SCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSSHH
T ss_pred CccCCCCcchhhHHHHHHHHHHHHHHHHHhh-CCCcEEEEccCCch
Confidence 2 21 244555556554 47778888878765
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=98.12 E-value=1.9e-05 Score=57.60 Aligned_cols=95 Identities=14% Similarity=0.173 Sum_probs=61.4
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCC--HHHHH----HHHH-----cCceeccCchhhccCCCEEEEe
Q 024016 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSN--LKRRD----AFES-----IGVKVLSDNNAVVEYSDVVVFS 78 (274)
Q Consensus 11 ~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~--~~~~~----~l~~-----~g~~~~~~~~~~~~~aDiIil~ 78 (274)
.||+||| +|++|+++|..|...+... ++.++ |.+ ++.++ ++.. ...++.....+.+++||+|+++
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~l~~--el~L~-Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~~~~~aDiVvit 77 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRDIAD--EVVFV-DIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVIT 77 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCS--EEEEE-CCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEEC
T ss_pred CeEEEECCCCcHHHHHHHHHHhCCCCC--EEEEE-ecCCcccccceeecchhhcccccCCceEeeCCHHHhhhcCEEEEe
Confidence 3899999 6999999999999998743 78999 864 33322 2221 1223333345567899999998
Q ss_pred e--C--ccc------------HHHHHHHhccccCCCCEEEEecCCCC
Q 024016 79 V--K--PQV------------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 79 v--~--~~~------------~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
- | |.. ++++.+++..+ .|+.+++-.++++.
T Consensus 78 aG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~-~p~~i~ivvtNPvD 123 (142)
T d1o6za1 78 AGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNPVD 123 (142)
T ss_dssp CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTT-CSCCEEEECCSSHH
T ss_pred cccccccCCchhhHHHHHHHHHHHHHHHHHhc-CCCceEEEecChHH
Confidence 5 2 221 23333445443 46778887777764
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=98.11 E-value=2.6e-06 Score=63.70 Aligned_cols=91 Identities=19% Similarity=0.238 Sum_probs=68.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc---Cceec-c---CchhhccCCCEEEEee--C
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI---GVKVL-S---DNNAVVEYSDVVVFSV--K 80 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~---g~~~~-~---~~~~~~~~aDiIil~v--~ 80 (274)
.-||.|||+|..|..=++.....|- +|+++ |+++++.+++... .+... . ...+.++++|+||-++ |
T Consensus 32 pa~V~ViGaGvaG~~A~~~A~~lGA----~V~~~-D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalip 106 (168)
T d1pjca1 32 PGKVVILGGGVVGTEAAKMAVGLGA----QVQIF-DINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVP 106 (168)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCT
T ss_pred CcEEEEECCChHHHHHHHHHhhCCC----EEEEE-eCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecC
Confidence 4689999999999999999989998 99999 9999999888872 23322 1 2356678999999997 3
Q ss_pred cccHHHHH-HHhccccCCCCEEEEec
Q 024016 81 PQVVKDVA-MQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 81 ~~~~~~v~-~~i~~~l~~~~~vis~~ 105 (274)
-...+.++ ++....++||.+||+++
T Consensus 107 G~~aP~lIt~~mv~~Mk~GSVIVDva 132 (168)
T d1pjca1 107 GRRAPILVPASLVEQMRTGSVIVDVA 132 (168)
T ss_dssp TSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred CcccCeeecHHHHhhcCCCcEEEEee
Confidence 22222222 34455678999999875
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.11 E-value=4.5e-06 Score=69.69 Aligned_cols=90 Identities=17% Similarity=0.202 Sum_probs=68.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----cCceeccCchhhccCCCEEEEeeCcccH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IGVKVLSDNNAVVEYSDVVVFSVKPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~----~g~~~~~~~~~~~~~aDiIil~v~~~~~ 84 (274)
+..+++|||+|..+...+..|... + +..+|.+| +|++++++.+.+ .+..+..++.+.+.+||+|+.||+...
T Consensus 124 ~~~~l~iiGaG~QA~~~~~al~~~-~-~i~~i~v~-~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~s~~- 199 (320)
T d1omoa_ 124 NSSVFGFIGCGTQAYFQLEALRRV-F-DIGEVKAY-DVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTPSRK- 199 (320)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHH-S-CCCEEEEE-CSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCCCSS-
T ss_pred CccEEEEecCcccHHHHHHHHHHH-h-hhhhcccc-cCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEeccCcc-
Confidence 446899999999999999998764 2 45689999 999999877765 566666778888999999999997532
Q ss_pred HHHHHHhccccCCCCEEEEec
Q 024016 85 KDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~ 105 (274)
.++. ...++||..|..+.
T Consensus 200 -P~~~--~~~l~~G~hv~~iG 217 (320)
T d1omoa_ 200 -PVVK--AEWVEEGTHINAIG 217 (320)
T ss_dssp -CCBC--GGGCCTTCEEEECS
T ss_pred -cccc--hhhcCCCCeEeecC
Confidence 1111 13578888777653
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=98.11 E-value=1.1e-05 Score=56.69 Aligned_cols=97 Identities=13% Similarity=0.222 Sum_probs=65.1
Q ss_pred CCCCCCCC--CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH-HHHHHHH-cCceecc--CchhhccCCCE
Q 024016 1 MDAFPIPA--ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-RRDAFES-IGVKVLS--DNNAVVEYSDV 74 (274)
Q Consensus 1 ~~~~~~~~--~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~-~~~~l~~-~g~~~~~--~~~~~~~~aDi 74 (274)
|..+|..+ +.++|.|||.|.+|..-++.|++.|. +|+++ +.... ....+.+ .+++... -..+.+.++++
T Consensus 1 M~~~Pi~l~l~~k~vlVvG~G~va~~ka~~ll~~ga----~v~v~-~~~~~~~~~~~~~~~~i~~~~~~~~~~dl~~~~l 75 (113)
T d1pjqa1 1 MDHLPIFCQLRDRDCLIVGGGDVAERKARLLLEAGA----RLTVN-ALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWL 75 (113)
T ss_dssp CCCEEEEECCBTCEEEEECCSHHHHHHHHHHHHTTB----EEEEE-ESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSE
T ss_pred CCccceEEEeCCCEEEEECCCHHHHHHHHHHHHCCC----eEEEE-eccCChHHHHHHhcCCceeeccCCCHHHhCCCcE
Confidence 67777664 46899999999999999999999998 99999 65443 3333443 3444322 12345778999
Q ss_pred EEEeeCcccHHHHHHHhccccCCCCEEEEec
Q 024016 75 VVFSVKPQVVKDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 75 Iil~v~~~~~~~v~~~i~~~l~~~~~vis~~ 105 (274)
|+.|+.+..+..-+.... ++..++|.+.
T Consensus 76 v~~at~d~~~n~~i~~~a---~~~~ilVNv~ 103 (113)
T d1pjqa1 76 AIAATDDDTVNQRVSDAA---ESRRIFCNVV 103 (113)
T ss_dssp EEECCSCHHHHHHHHHHH---HHTTCEEEET
T ss_pred EeecCCCHHHHHHHHHHH---HHcCCEEEeC
Confidence 999998776654332222 2224566653
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=98.09 E-value=5.8e-06 Score=56.26 Aligned_cols=71 Identities=23% Similarity=0.264 Sum_probs=55.5
Q ss_pred CCCCCCCCeEEEEcccHHH-HHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHHcCceecc-CchhhccCCCEEEEee
Q 024016 4 FPIPAESFILGFIGAGKMA-ESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIGVKVLS-DNNAVVEYSDVVVFSV 79 (274)
Q Consensus 4 ~~~~~~~~~IgiIG~G~mG-~~~a~~L~~~g~~~~~~v~v~~~r~~-~~~~~l~~~g~~~~~-~~~~~~~~aDiIil~v 79 (274)
+|-....+||-|||.|-.| +++|+.|.+.|| +|+.+ |+.. ...+.+.+.|+.+.. ...+.+.+.|+|+...
T Consensus 2 ~~~~~~~~~ihfiGigG~GMs~LA~~L~~~G~----~VsGS-D~~~~~~~~~L~~~Gi~v~~g~~~~~i~~~d~vV~S~ 75 (96)
T d1p3da1 2 IPEMRRVQQIHFIGIGGAGMSGIAEILLNEGY----QISGS-DIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVSS 75 (96)
T ss_dssp CCCCTTCCEEEEETTTSTTHHHHHHHHHHHTC----EEEEE-ESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEEEECT
T ss_pred CccchhCCEEEEEEECHHHHHHHHHHHHhCCC----EEEEE-eCCCChhhhHHHHCCCeEEECCccccCCCCCEEEECC
Confidence 3556677899999999999 788999999999 99999 8753 556778888887542 3344467889888764
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.08 E-value=2.1e-06 Score=63.20 Aligned_cols=97 Identities=11% Similarity=0.079 Sum_probs=61.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--cCce-eccCchhhccCCCEEEEeeCcccHH
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--IGVK-VLSDNNAVVEYSDVVVFSVKPQVVK 85 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~--~g~~-~~~~~~~~~~~aDiIil~v~~~~~~ 85 (274)
|+||||||+ |..|+-+.+.|+++...+..+++.+ .++...-..... .... ......+...++|++|+|+|.+...
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~-~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~~~~~s~ 79 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFF-STSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDYTN 79 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEE-ESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSCHHHHH
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEe-eccccccccccccCCceeeecccchhhhhcCcEEEEecCchHHH
Confidence 358999987 9999999998887643344466666 443322111111 1111 1112234567999999999999888
Q ss_pred HHHHHhccccCCCCEEEEecCCC
Q 024016 86 DVAMQIRPLLSRKKLLVSVAAGV 108 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~~g~ 108 (274)
++...+... ..+.+|||.++..
T Consensus 80 ~~~~~~~~~-g~~~~VID~Ss~f 101 (146)
T d1t4ba1 80 EIYPKLRES-GWQGYWIDAASSL 101 (146)
T ss_dssp HHHHHHHHT-TCCCEEEECSSTT
T ss_pred HhhHHHHhc-CCCeecccCCccc
Confidence 887776542 2335788887654
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.07 E-value=4.9e-06 Score=58.76 Aligned_cols=95 Identities=23% Similarity=0.330 Sum_probs=72.5
Q ss_pred CeEEEEcc----cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHH
Q 024016 11 FILGFIGA----GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (274)
Q Consensus 11 ~~IgiIG~----G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~ 86 (274)
++|+|||+ |..|..+.++|++.|| +|+.. +++.+.. .|.....+..++-...|++++++|++.+.+
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~----~V~pV-nP~~~~i-----~G~~~y~sl~~lp~~~D~vvi~vp~~~~~~ 71 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGF----EVLPV-NPNYDEI-----EGLKCYRSVRELPKDVDVIVFVVPPKVGLQ 71 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTC----EEEEE-CTTCSEE-----TTEECBSSGGGSCTTCCEEEECSCHHHHHH
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCC----EEEEE-ccccccc-----cCccccccchhccccceEEEEEeCHHHHHH
Confidence 58999994 7899999999999999 88888 7654332 588888888888788899999999999999
Q ss_pred HHHHhccccCCCCEEEEecCCCCHHHHHHhhC
Q 024016 87 VAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG 118 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~~ 118 (274)
++++.... .... ++ +..|...+.+.+.+.
T Consensus 72 ~l~~~~~~-g~k~-v~-~~~g~~~~~~~~~a~ 100 (116)
T d1y81a1 72 VAKEAVEA-GFKK-LW-FQPGAESEEIRRFLE 100 (116)
T ss_dssp HHHHHHHT-TCCE-EE-ECTTSCCHHHHHHHH
T ss_pred HHHHHHhc-CCce-EE-eccchhhHHHHHHHH
Confidence 99886643 2222 33 345655566655543
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.07 E-value=8.6e-06 Score=59.80 Aligned_cols=66 Identities=18% Similarity=0.296 Sum_probs=47.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH--HHH----HHHH------cCcee---ccCchhhccCCCE
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLK--RRD----AFES------IGVKV---LSDNNAVVEYSDV 74 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~--~~~----~l~~------~g~~~---~~~~~~~~~~aDi 74 (274)
|||+|||+ |++|.++|..|...+... ++.++ |+++. +++ .+.. ...++ .++..+.+++||+
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~--el~L~-D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDv 77 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMK--DLVLI-GREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDV 77 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCC--EEEEE-ECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCccc--ccccc-cchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceE
Confidence 69999995 999999999999988643 89999 98753 232 2222 12222 1334567889999
Q ss_pred EEEee
Q 024016 75 VVFSV 79 (274)
Q Consensus 75 Iil~v 79 (274)
|+++.
T Consensus 78 VVitA 82 (145)
T d1hyea1 78 VIITS 82 (145)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 99984
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=98.01 E-value=1.4e-05 Score=57.30 Aligned_cols=95 Identities=19% Similarity=0.247 Sum_probs=65.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHHHH
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAM 89 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~~ 89 (274)
|||+|.|+ |+||+.+++.+.+.++ ++....+++ ..+...++|+||=.+.|+.+.+.++
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~----~l~~~id~~-----------------~~~~~~~~DVvIDFS~p~~~~~~l~ 59 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGH----ELVLKVDVN-----------------GVEELDSPDVVIDFSSPEALPKTVD 59 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEEEETT-----------------EEEECSCCSEEEECSCGGGHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCC----eEEEEECCC-----------------cHHHhccCCEEEEecCHHHHHHHHH
Confidence 69999996 9999999999888888 665432432 2233567999999999999888887
Q ss_pred HhccccCCCCEEEEecCCCCHHHHHH---hhCCCceEEEcCCcH
Q 024016 90 QIRPLLSRKKLLVSVAAGVKLKDLQE---WTGHSRFIRVMPNTP 130 (274)
Q Consensus 90 ~i~~~l~~~~~vis~~~g~~~~~l~~---~~~~~~~~~~~p~~~ 130 (274)
....+ +..+|.-+.|.+.+.++. .....+++ ..||.+
T Consensus 60 ~~~~~---~~p~ViGTTG~~~~~~~~i~~~ak~~pv~-~a~N~s 99 (128)
T d1vm6a3 60 LCKKY---RAGLVLGTTALKEEHLQMLRELSKEVPVV-QAYSRT 99 (128)
T ss_dssp HHHHH---TCEEEECCCSCCHHHHHHHHHHTTTSEEE-ECSCTH
T ss_pred HHHhc---CCCEEEEcCCCCHHHHHHHHHHHhhCCEE-eeeccC
Confidence 65432 345676778888765543 33333444 335654
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=98.00 E-value=1.6e-05 Score=61.59 Aligned_cols=99 Identities=16% Similarity=0.211 Sum_probs=70.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhc-cCCCEEEEeeCcccH-H
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVV-EYSDVVVFSVKPQVV-K 85 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~-~~aDiIil~v~~~~~-~ 85 (274)
.+.+||+|.|.|++|..+++.|.+.|. .|+++ +.++++.+.....|.+..+. .++. .+|||++-|--...+ .
T Consensus 25 L~gk~v~IqG~G~VG~~~A~~L~~~Ga----kvvv~-d~d~~~~~~~~~~g~~~~~~-~~~~~~~~DI~iPcA~~~~I~~ 98 (201)
T d1c1da1 25 LDGLTVLVQGLGAVGGSLASLAAEAGA----QLLVA-DTDTERVAHAVALGHTAVAL-EDVLSTPCDVFAPCAMGGVITT 98 (201)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTTCEECCG-GGGGGCCCSEEEECSCSCCBCH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEe-cchHHHHHHHHhhcccccCc-cccccccceeeecccccccccH
Confidence 456899999999999999999999998 99999 99999988888888877643 4444 489999987544443 4
Q ss_pred HHHHHhccccCCCCEEEEecCC-CCHHHHHHhh
Q 024016 86 DVAMQIRPLLSRKKLLVSVAAG-VKLKDLQEWT 117 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~~g-~~~~~l~~~~ 117 (274)
+..+.+. -++|+.-.++ +..+...+.+
T Consensus 99 ~~a~~i~-----ak~i~e~AN~p~~~~~~~~~L 126 (201)
T d1c1da1 99 EVARTLD-----CSVVAGAANNVIADEAASDIL 126 (201)
T ss_dssp HHHHHCC-----CSEECCSCTTCBCSHHHHHHH
T ss_pred HHHhhhh-----hheeeccCCCCcchhhHHHHh
Confidence 4455442 2455544443 3444444444
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=97.98 E-value=6.7e-06 Score=62.27 Aligned_cols=90 Identities=10% Similarity=0.138 Sum_probs=65.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccC--------------------------
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSD-------------------------- 64 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~-------------------------- 64 (274)
-||.|||+|..|..=++-....|- +|+++ |.++++.+++.+.+....+.
T Consensus 30 a~VvViGaGvaG~~Aa~~A~~lGA----~V~v~-D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~ 104 (183)
T d1l7da1 30 ARVLVFGVGVAGLQAIATAKRLGA----VVMAT-DVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQ 104 (183)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCSTTHHHHHHTTCEECCC-----------------------CCH
T ss_pred cEEEEEcCcHHHHHHHHHHHHcCC----EEEEE-eccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHH
Confidence 489999999999988888888887 99999 99999999998865432110
Q ss_pred ---chhhccCCCEEEEee--CcccHHHHH-HHhccccCCCCEEEEec
Q 024016 65 ---NNAVVEYSDVVVFSV--KPQVVKDVA-MQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 65 ---~~~~~~~aDiIil~v--~~~~~~~v~-~~i~~~l~~~~~vis~~ 105 (274)
..+.+.++|+||.++ |-...+.++ ++....++||.+||+++
T Consensus 105 ~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDva 151 (183)
T d1l7da1 105 AEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA 151 (183)
T ss_dssp HHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred HHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEe
Confidence 123467899999987 322222222 34555678999999874
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=97.97 E-value=3.1e-05 Score=57.23 Aligned_cols=86 Identities=12% Similarity=0.120 Sum_probs=65.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCccc--HHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQV--VKD 86 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~--~~~ 86 (274)
..+++.|+|.|..|+.+|.++...|- +|+|+ .++|-++-+..-.|.++ .+..++++.+|++|.+|.... -.+
T Consensus 22 aGk~vvV~GYG~vGrG~A~~~rg~Ga----~V~V~-E~DPi~alqA~mdGf~v-~~~~~a~~~aDi~vTaTGn~~vI~~~ 95 (163)
T d1v8ba1 22 SGKIVVICGYGDVGKGCASSMKGLGA----RVYIT-EIDPICAIQAVMEGFNV-VTLDEIVDKGDFFITCTGNVDVIKLE 95 (163)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHHTC----EEEEE-CSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECCSSSSSBCHH
T ss_pred cCCEEEEecccccchhHHHHHHhCCC----EEEEE-ecCchhhHHHHhcCCcc-CchhHccccCcEEEEcCCCCccccHH
Confidence 45799999999999999999999998 99999 99996543333378887 467899999999999996433 233
Q ss_pred HHHHhccccCCCCEEEEe
Q 024016 87 VAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~ 104 (274)
-+. .++.+.+|.+.
T Consensus 96 h~~----~MKdgaIl~N~ 109 (163)
T d1v8ba1 96 HLL----KMKNNAVVGNI 109 (163)
T ss_dssp HHT----TCCTTCEEEEC
T ss_pred HHH----HhhCCeEEEec
Confidence 333 35677666654
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=97.92 E-value=3.9e-06 Score=61.73 Aligned_cols=98 Identities=12% Similarity=0.117 Sum_probs=59.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHH-cCceeccCchhhccCCCEEEEeeCcccHHHH
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v 87 (274)
|||||||+ |..|.-+.+.|+++...+..++..+..++. .+.-.+.. ..........+..+++|++|+|+|.+...++
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~~~s~~~ 80 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGSYTEKV 80 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHHHHHHH
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhccccEEEEecCchHHHHH
Confidence 69999976 999999999887643213335554412221 11100000 0111111223456899999999999998888
Q ss_pred HHHhccccCCCCEEEEecCCCC
Q 024016 88 AMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 88 ~~~i~~~l~~~~~vis~~~g~~ 109 (274)
...+... ..+..||+.++...
T Consensus 81 ~~~l~~~-g~~~~VIDlSsdfR 101 (147)
T d1mb4a1 81 YPALRQA-GWKGYWIDAASTLR 101 (147)
T ss_dssp HHHHHHT-TCCSEEEESSSTTT
T ss_pred hHHHHHc-CCceEEEeCCcccc
Confidence 8777643 23357999877653
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=97.91 E-value=3.4e-05 Score=51.44 Aligned_cols=64 Identities=14% Similarity=0.258 Sum_probs=51.6
Q ss_pred CeEEEEcccHHHH-HHHHHHHhCCCCCCCcEEEEeCCCH-HHHHHHHHcCceecc-CchhhccCCCEEEEee
Q 024016 11 FILGFIGAGKMAE-SIAKGVAKSGVLPPDRICTAVHSNL-KRRDAFESIGVKVLS-DNNAVVEYSDVVVFSV 79 (274)
Q Consensus 11 ~~IgiIG~G~mG~-~~a~~L~~~g~~~~~~v~v~~~r~~-~~~~~l~~~g~~~~~-~~~~~~~~aDiIil~v 79 (274)
|||-|||.|-+|- ++|+.|.+.|+ +|+.+ |+.+ +..+.|.+.|+++.. ...+-+.++|+|+...
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G~----~VsGS-D~~~~~~t~~L~~~Gi~i~~gh~~~~i~~~d~vV~Ss 68 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNGN----DVYGS-NIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKTP 68 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-CSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEECT
T ss_pred cEEEEEeECHHHHHHHHHHHHhCCC----eEEEE-eCCCChhHHHHHHCCCeEEeeecccccCCCCEEEEec
Confidence 7999999999997 78999999999 99999 8876 566788889987642 2234467899988764
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.89 E-value=4.3e-06 Score=61.46 Aligned_cols=96 Identities=11% Similarity=0.213 Sum_probs=61.6
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc--CceeccCchhhccCCCEEEEeeCcccHH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI--GVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~--g~~~~~~~~~~~~~aDiIil~v~~~~~~ 85 (274)
+.|||||||+ |..|.-+.+-|.+..| +..++.....++ ..-+.+... .........+...++|++|+|+|.....
T Consensus 1 q~mnVaIvGATGyvG~eli~lL~~~~h-P~~~l~~~~s~~-~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~~s~ 78 (144)
T d2hjsa1 1 QPLNVAVVGATGSVGEALVGLLDERDF-PLHRLHLLASAE-SAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAEVSR 78 (144)
T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHTTC-CCSCEEEEECTT-TTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCC-CceEEEEEeecc-cCCcceeeccccchhccchhhhhccceEEEecCCcchhh
Confidence 3579999987 9999999998876665 445676552322 111111111 1111122234467899999999988877
Q ss_pred HHHHHhccccCCCCEEEEecCCCC
Q 024016 86 DVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
+....+. ..|..||+.++...
T Consensus 79 ~~~~~~~---~~g~~VID~Ss~fR 99 (144)
T d2hjsa1 79 AHAERAR---AAGCSVIDLSGALE 99 (144)
T ss_dssp HHHHHHH---HTTCEEEETTCTTT
T ss_pred hhccccc---cCCceEEeechhhc
Confidence 7776654 46788998876553
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.86 E-value=1.5e-05 Score=59.24 Aligned_cols=101 Identities=12% Similarity=0.167 Sum_probs=61.0
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCC---cEEEE-eCCCHHHHHHHHH----------cCceeccCchhhccCCC
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPD---RICTA-VHSNLKRRDAFES----------IGVKVLSDNNAVVEYSD 73 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~---~v~v~-~~r~~~~~~~l~~----------~g~~~~~~~~~~~~~aD 73 (274)
+.+||+|||+ |.+|++++..|...++.... .+.++ .+++.++.+.+.. .+....++..+.++++|
T Consensus 3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad 82 (154)
T d1y7ta1 3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDAD 82 (154)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhccccc
Confidence 3459999996 99999999999887653211 12333 0344444443321 12344556677899999
Q ss_pred EEEEee--C--cc-c-----------HHHHHHHhccccCCCCEEEEecCCCC
Q 024016 74 VVVFSV--K--PQ-V-----------VKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 74 iIil~v--~--~~-~-----------~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
+|+++- | |. . ++++...+..+-+++.+++-.++++.
T Consensus 83 vViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvD 134 (154)
T d1y7ta1 83 YALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPAN 134 (154)
T ss_dssp EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred EEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHH
Confidence 999986 2 21 1 23333445555456666766666544
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.86 E-value=1.7e-05 Score=57.70 Aligned_cols=94 Identities=16% Similarity=0.182 Sum_probs=71.6
Q ss_pred CeEEEEcc----cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHH
Q 024016 11 FILGFIGA----GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (274)
Q Consensus 11 ~~IgiIG~----G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~ 86 (274)
++|+|||+ +..|..+.++|.+.|| +|+.. ++..... .|..+..+..++-...|++++++|++.+.+
T Consensus 20 ksIAVVGaS~~~~~~g~~v~~~L~~~g~----~v~pV-nP~~~~i-----~G~~~~~sl~dlp~~iD~v~i~vp~~~~~~ 89 (139)
T d2d59a1 20 KKIALVGASPKPERDANIVMKYLLEHGY----DVYPV-NPKYEEV-----LGRKCYPSVLDIPDKIEVVDLFVKPKLTME 89 (139)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTC----EEEEE-CTTCSEE-----TTEECBSSGGGCSSCCSEEEECSCHHHHHH
T ss_pred CeEEEEeecCCCCCchHHHHHHHHHCCC----EEEEE-CCccccc-----CCCcccccccccCccceEEEEEeCHHHHHH
Confidence 58999996 6899999999999999 89888 7653222 588888888887778999999999999999
Q ss_pred HHHHhccccCCCCEEEEecCCCCHHHHHHhh
Q 024016 87 VAMQIRPLLSRKKLLVSVAAGVKLKDLQEWT 117 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~ 117 (274)
+++++... ... .+-+..|...+.+.+..
T Consensus 90 ~~~e~~~~-g~k--~v~~~~G~~~ee~~~~a 117 (139)
T d2d59a1 90 YVEQAIKK-GAK--VVWFQYNTYNREASKKA 117 (139)
T ss_dssp HHHHHHHH-TCS--EEEECTTCCCHHHHHHH
T ss_pred HHHHHHHh-CCC--EEEEeccccCHHHHHHH
Confidence 99887653 232 33344555555555444
|
| >d2f1ka1 a.100.1.12 (A:166-279) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: TyrA dimerization domain-like domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=97.85 E-value=1e-05 Score=56.82 Aligned_cols=98 Identities=10% Similarity=0.052 Sum_probs=69.3
Q ss_pred CccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCH---HHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHH
Q 024016 168 DEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPR---ELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTI 244 (274)
Q Consensus 168 ~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~ 244 (274)
++++||.+++.++|.|++++. +++...... -+. .....+..++|++++|++. .+|.+|.+.+..+.....
T Consensus 1 TPeeHD~~~A~iSHLPHlia~---~l~~~~~~~-~~~~~~~~~~~~ag~gfrD~tRiA~---s~p~mW~dI~~~N~~~i~ 73 (114)
T d2f1ka1 1 TPADHDQAVAWISHLPVMVSA---ALIQACAGE-KDGDILKLAQNLASSGFRDTSRVGG---GNPELGTMMATYNQRALL 73 (114)
T ss_dssp CHHHHHHHHHHHTHHHHHHHH---HHHHHHHTC-SCHHHHHHHHHHCCHHHHHHHTGGG---SCHHHHHHHHHHSHHHHH
T ss_pred ChHHHHHHHHHHhhHHHHHHH---HHHHHHHhh-hhhhhHHHHHHHhhhhHHHHHHHHc---cCHHHHHHHHHHHHHHHH
Confidence 356799999999999987654 333222211 122 2345677899999998864 689999999999988888
Q ss_pred HHHHHHHhC--CHHHHHH----HHHHHHHHHHhh
Q 024016 245 AGIHELEKS--GFRGILM----NAVVAAAKRSRE 272 (274)
Q Consensus 245 ~~l~~l~~~--~~~~~~~----~a~~~~~~r~~~ 272 (274)
..|+.+.+. .+...+. +.+.+.++++++
T Consensus 74 ~~l~~~~~~L~~l~~~l~~~d~~~l~~~l~~a~~ 107 (114)
T d2f1ka1 74 KSLQDYRQHLDQLITLISNQQWPELHRLLQQTNG 107 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888777664 5555553 467777777765
|
| >d2g5ca1 a.100.1.12 (A:201-310) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: TyrA dimerization domain-like domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=97.83 E-value=6.1e-07 Score=62.84 Aligned_cols=99 Identities=16% Similarity=0.197 Sum_probs=68.3
Q ss_pred CccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHHH
Q 024016 168 DEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGI 247 (274)
Q Consensus 168 ~e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~l 247 (274)
++++||.+++.++|.|++++.. ++..+.+...+......+..++|++++|++ +.+|++|.+.+.++.......|
T Consensus 1 SPeeHD~~~A~vSHlPHlia~a---l~~~~~~~~~~~~~~~~~agggfrD~TRiA---~s~p~mW~dI~~~N~~~i~~~l 74 (110)
T d2g5ca1 1 SPELHDYVFGVVSHLPHAVAFA---LVDTLIHMSTPEVDLFKYPGGGFKDFTRIA---KSDPIMWRDIFLENKENVMKAI 74 (110)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHH---HHHHHHHHCBTTBCGGGCCTTTGGGC---C---CSCHHHHHHHHHHTHHHHHHHH
T ss_pred ChHHHHHHHHHHhhHHHHHHHH---HHHHHHHhhcchHHHHHHcchhHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999987653 333333333333334567889999999886 4789999999999988888888
Q ss_pred HHHHhC--CHHHHHH----HHHHHHHHHHhh
Q 024016 248 HELEKS--GFRGILM----NAVVAAAKRSRE 272 (274)
Q Consensus 248 ~~l~~~--~~~~~~~----~a~~~~~~r~~~ 272 (274)
+.+++. .+...+. +.+.+.++++++
T Consensus 75 ~~~~~~L~~~~~~l~~~D~~~l~~~l~~a~~ 105 (110)
T d2g5ca1 75 EGFEKSLNHLKELIVREAEEELVEYLKEVKI 105 (110)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 887664 4555553 366667776664
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.77 E-value=1.6e-05 Score=57.07 Aligned_cols=87 Identities=18% Similarity=0.250 Sum_probs=66.5
Q ss_pred CCeEEEEcc----cHHHHHHHHHHHhCC-CCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccH
Q 024016 10 SFILGFIGA----GKMAESIAKGVAKSG-VLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVV 84 (274)
Q Consensus 10 ~~~IgiIG~----G~mG~~~a~~L~~~g-~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~ 84 (274)
.++|+|||+ |.+|..+.++|.+.| + +|+.. |++.+.. .|...+.+..++-...|++++++|++.+
T Consensus 8 PksIAVVGaS~~~~~~g~~v~~~L~~~~~g----~v~pV-nP~~~~i-----~G~~~y~sl~dlp~~vDlvvi~vp~~~~ 77 (129)
T d2csua1 8 PKGIAVIGASNDPKKLGYEVFKNLKEYKKG----KVYPV-NIKEEEV-----QGVKAYKSVKDIPDEIDLAIIVVPKRFV 77 (129)
T ss_dssp CSEEEEETCCSCTTSHHHHHHHHHTTCCSS----EEEEE-CSSCSEE-----TTEECBSSTTSCSSCCSEEEECSCHHHH
T ss_pred CCeEEEEccCCCCCCcHHHHHHHHHHcCCC----cEEEe-ccCcccc-----CCeEeecchhhcCCCCceEEEecChHHh
Confidence 368999997 899999999997755 3 88888 7764332 5888888988887789999999999999
Q ss_pred HHHHHHhccccCCCCEEEEecCCC
Q 024016 85 KDVAMQIRPLLSRKKLLVSVAAGV 108 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~~g~ 108 (274)
.+++++....--+ ..++ .++|.
T Consensus 78 ~~~~~~~~~~g~~-~~vi-~s~Gf 99 (129)
T d2csua1 78 KDTLIQCGEKGVK-GVVI-ITAGF 99 (129)
T ss_dssp HHHHHHHHHHTCC-EEEE-CCCSS
T ss_pred HHHHHHHHHcCCC-EEEE-ecccc
Confidence 9999887654222 2333 44554
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=97.76 E-value=1e-05 Score=60.55 Aligned_cols=100 Identities=18% Similarity=0.157 Sum_probs=67.2
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEE-EEeCCCHHHH--HHH------HHcCceeccCchhhccCCCEEEEe
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRIC-TAVHSNLKRR--DAF------ESIGVKVLSDNNAVVEYSDVVVFS 78 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~-v~~~r~~~~~--~~l------~~~g~~~~~~~~~~~~~aDiIil~ 78 (274)
+.+||+|+|+ |+||+.+++.+.+...+ ++. ++ +|..... +.+ ...++.+.++..+..+.+|+||=.
T Consensus 3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~---~lv~~~-~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDF 78 (162)
T d1diha1 3 ANIRVAIAGAGGRMGRQLIQAALALEGV---QLGAAL-EREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDF 78 (162)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTE---ECCCEE-CCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEEC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCC---EEEEEE-ecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEe
Confidence 4679999995 99999999988876421 433 44 5543211 011 113556667777888899999999
Q ss_pred eCcccHHHHHHHhccccCCCCEEEEecCCCCHHHHHH
Q 024016 79 VKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQE 115 (274)
Q Consensus 79 v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~ 115 (274)
+.|+...+.++.... .+..+|.-+.|.+.+++..
T Consensus 79 s~p~~~~~~~~~a~~---~~~~~ViGTTG~~~~~~~~ 112 (162)
T d1diha1 79 TRPEGTLNHLAFCRQ---HGKGMVIGTTGFDEAGKQA 112 (162)
T ss_dssp SCHHHHHHHHHHHHH---TTCEEEECCCCCCHHHHHH
T ss_pred ccHHHHHHHHHHHHh---ccceeEEecCCCcHHHHHH
Confidence 999988888765443 3455666667887665543
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.76 E-value=9.2e-06 Score=54.91 Aligned_cols=65 Identities=20% Similarity=0.119 Sum_probs=43.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH--HHHHHHHcCce--eccCchhhccCCCEEEEee
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK--RRDAFESIGVK--VLSDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~--~~~~l~~~g~~--~~~~~~~~~~~aDiIil~v 79 (274)
+.+||.|+|+|..|.+.++.|.+.|+ +|++| |.+.. ..+.+. .+.. ......+...+.|+||+.-
T Consensus 4 ~~K~v~ViGlG~sG~s~a~~L~~~g~----~v~~~-D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~vi~SP 72 (93)
T d2jfga1 4 QGKNVVIIGLGLTGLSCVDFFLARGV----TPRVM-DTRMTPPGLDKLP-EAVERHTGSLNDEWLMAADLIVASP 72 (93)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTC----CCEEE-ESSSSCTTGGGSC-TTSCEEESBCCHHHHHHCSEEEECT
T ss_pred CCCEEEEEeECHHHHHHHHHHHHCCC----EEEEe-eCCcCchhHHHHh-hccceeecccchhhhccCCEEEECC
Confidence 56799999999999999999999998 99999 76442 222222 2222 1122234456677777753
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.64 E-value=5.4e-06 Score=62.77 Aligned_cols=81 Identities=12% Similarity=0.078 Sum_probs=49.8
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhcc--CCCEEEEeeCccc
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVE--YSDVVVFSVKPQV 83 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~--~aDiIil~v~~~~ 83 (274)
...++||||||+|.||...+..|.+.... ..+.++ +....+ .... .+.. ..+..+++. +.|+|++|+|++.
T Consensus 4 ~~~k~kv~iIG~G~~g~~h~~~l~~~~~~--~~~~~~-~~~~~~--~~~~~~~~~-~~~~~e~l~~~~iD~V~I~tp~~~ 77 (172)
T d1lc0a1 4 NSGKFGVVVVGVGRAGSVRLRDLKDPRSA--AFLNLI-GFVSRR--ELGSLDEVR-QISLEDALRSQEIDVAYICSESSS 77 (172)
T ss_dssp CCCSEEEEEECCSHHHHHHHHHHTSHHHH--TTEEEE-EEECSS--CCCEETTEE-BCCHHHHHHCSSEEEEEECSCGGG
T ss_pred CCCCcEEEEEcCCHHHHHHHHHHHhCCCC--cEEEEE-eccchH--HHHHhhccC-cCCHHHHHhCCCcchhhhcccccc
Confidence 34567999999999999998888654310 124444 221111 1111 2222 235666654 5799999999988
Q ss_pred HHHHHHHhcc
Q 024016 84 VKDVAMQIRP 93 (274)
Q Consensus 84 ~~~v~~~i~~ 93 (274)
..+++.....
T Consensus 78 H~~~~~~al~ 87 (172)
T d1lc0a1 78 HEDYIRQFLQ 87 (172)
T ss_dssp HHHHHHHHHH
T ss_pred cccccccccc
Confidence 7777665443
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.64 E-value=5.8e-05 Score=57.16 Aligned_cols=73 Identities=15% Similarity=0.175 Sum_probs=46.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH-HHHHHcC-----------------ceeccCchhhccCC
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR-DAFESIG-----------------VKVLSDNNAVVEYS 72 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~-~~l~~~g-----------------~~~~~~~~~~~~~a 72 (274)
.||||.|.|+||+.+++.+.+... .+|...+++++... ..+...+ +.+..+..+...++
T Consensus 2 IKVaINGfGRIGR~v~Ral~~~~d---ievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~v 78 (178)
T d1b7go1 2 VNVAVNGYGTIGKRVADAIIKQPD---MKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTS 78 (178)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTT---EEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHC
T ss_pred eEEEEECCCHHHHHHHHHHHhCCC---CEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcC
Confidence 489999999999999999987652 26666647665432 2222222 22222334445578
Q ss_pred CEEEEeeCcccHHH
Q 024016 73 DVVVFSVKPQVVKD 86 (274)
Q Consensus 73 DiIil~v~~~~~~~ 86 (274)
|+|+-|++...-.+
T Consensus 79 DiViecTG~f~~~e 92 (178)
T d1b7go1 79 DIVVDTTPNGVGAQ 92 (178)
T ss_dssp SEEEECCSTTHHHH
T ss_pred CEEEECCCCcCCHH
Confidence 88888887654433
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=97.62 E-value=1.8e-05 Score=60.34 Aligned_cols=93 Identities=16% Similarity=0.117 Sum_probs=60.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--------cCc--eec--cC---chhhccCCC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--------IGV--KVL--SD---NNAVVEYSD 73 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~--------~g~--~~~--~~---~~~~~~~aD 73 (274)
+.++|.|||+|-+|.+++..|.+.|. .+++++ +|++++.+++.. ... ... .+ ..+....+|
T Consensus 17 ~~k~vlIlGaGGaarai~~al~~~g~---~~i~i~-nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 92 (182)
T d1vi2a1 17 KGKTMVLLGAGGASTAIGAQGAIEGL---KEIKLF-NRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASAD 92 (182)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-ECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCS
T ss_pred CCCEEEEECCcHHHHHHHHHHhhcCC---ceEeee-ccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccc
Confidence 55799999999999999999999886 489999 998876654432 111 111 11 233456899
Q ss_pred EEEEeeCcccHHHHHHHh---ccccCCCCEEEEec
Q 024016 74 VVVFSVKPQVVKDVAMQI---RPLLSRKKLLVSVA 105 (274)
Q Consensus 74 iIil~v~~~~~~~v~~~i---~~~l~~~~~vis~~ 105 (274)
+||=|+|...-..--+.+ ...++++.+++++.
T Consensus 93 iiIN~Tp~G~~~~~~~~~~~~~~~~~~~~~v~Di~ 127 (182)
T d1vi2a1 93 ILTNGTKVGMKPLENESLVNDISLLHPGLLVTECV 127 (182)
T ss_dssp EEEECSSTTSTTSCSCCSCCCGGGSCTTCEEEECC
T ss_pred eeccccCCccccccchhhhhHHHhhhcchhhHHhh
Confidence 999999854321000111 12356777888775
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.57 E-value=7.2e-05 Score=56.61 Aligned_cols=68 Identities=19% Similarity=0.241 Sum_probs=51.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-c----Cc-----eeccCchhhccCCCEEEEe
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-I----GV-----KVLSDNNAVVEYSDVVVFS 78 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~----g~-----~~~~~~~~~~~~aDiIil~ 78 (274)
+.++|.|||+|..+++++..|.+.| +|+++ +|++++++.+.+ . .. .-..+.......+|+||-|
T Consensus 17 ~~k~vlIlGaGG~arai~~aL~~~~-----~i~I~-nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~ 90 (177)
T d1nvta1 17 KDKNIVIYGAGGAARAVAFELAKDN-----NIIIA-NRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINA 90 (177)
T ss_dssp CSCEEEEECCSHHHHHHHHHHTSSS-----EEEEE-CSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEEC
T ss_pred CCCEEEEECCcHHHHHHHHHHcccc-----ceeee-hhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccC
Confidence 5679999999999999999997654 79999 999999988764 1 11 1123344556788999999
Q ss_pred eCcc
Q 024016 79 VKPQ 82 (274)
Q Consensus 79 v~~~ 82 (274)
+|..
T Consensus 91 tp~g 94 (177)
T d1nvta1 91 TPIG 94 (177)
T ss_dssp SCTT
T ss_pred Cccc
Confidence 9754
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=0.00033 Score=52.36 Aligned_cols=87 Identities=13% Similarity=0.128 Sum_probs=61.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceecc-----Cchhhc--------cCCCEEE
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLS-----DNNAVV--------EYSDVVV 76 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~-----~~~~~~--------~~aDiIi 76 (274)
..+|.|+|+|.+|...+.-+...|. .+|+++ ++++++.+.+++.|+.... ++.+.. ..+|+||
T Consensus 27 gd~VlI~G~G~iG~~~~~~a~~~G~---~~Vi~~-d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvi 102 (171)
T d1pl8a2 27 GHKVLVCGAGPIGMVTLLVAKAMGA---AQVVVT-DLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTI 102 (171)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-ESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEE
T ss_pred CCEEEEECCCccHHHHHHHHHHcCC---ceEEec-cCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEE
Confidence 4589999999999999988888886 368999 9999999988888864321 111111 2589999
Q ss_pred EeeCccc-HHHHHHHhccccCCCCEEEEe
Q 024016 77 FSVKPQV-VKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 77 l~v~~~~-~~~v~~~i~~~l~~~~~vis~ 104 (274)
-|+.... ++..+.- ++++..++..
T Consensus 103 d~~G~~~~~~~a~~~----~~~gG~iv~~ 127 (171)
T d1pl8a2 103 ECTGAEASIQAGIYA----TRSGGTLVLV 127 (171)
T ss_dssp ECSCCHHHHHHHHHH----SCTTCEEEEC
T ss_pred eccCCchhHHHHHHH----hcCCCEEEEE
Confidence 9997543 4444433 4555565543
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.53 E-value=0.00018 Score=53.04 Aligned_cols=98 Identities=13% Similarity=0.117 Sum_probs=60.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCC---CCCcEEEEeCCCH--HHHHHHHH----c------CceeccCchhhccCCCE
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVL---PPDRICTAVHSNL--KRRDAFES----I------GVKVLSDNNAVVEYSDV 74 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~---~~~~v~v~~~r~~--~~~~~l~~----~------g~~~~~~~~~~~~~aDi 74 (274)
+||+|||+ |++|++++..|...+.. ...++.++ |.++ ++++.+.- . ......+..+..+++|+
T Consensus 4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~-d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv 82 (154)
T d5mdha1 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLL-DITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDV 82 (154)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEE-CCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSE
T ss_pred eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEe-cCccchhhhhhhhhhhcccccccccccccCcccccccCCceE
Confidence 59999995 99999999998765432 12246777 7654 33333321 1 23445666788999999
Q ss_pred EEEee--C--cc------------cHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 75 VVFSV--K--PQ------------VVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 75 Iil~v--~--~~------------~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
|+++- | +. .++++...+..+-++..+++-.++++.
T Consensus 83 VVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPvD 133 (154)
T d5mdha1 83 AILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPAN 133 (154)
T ss_dssp EEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred EEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcHH
Confidence 99986 2 21 234444555554444444555556544
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=97.51 E-value=0.00023 Score=55.96 Aligned_cols=100 Identities=16% Similarity=0.198 Sum_probs=70.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCcccH-H
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVV-K 85 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~~~-~ 85 (274)
.+.++|.|-|.|++|..+++.|.+.|. .|++. +.++.+.+.+.. .|....+...-.-.+|||++-|--...+ +
T Consensus 37 l~g~~v~IqG~GnVG~~~a~~L~~~Ga----kvv~~-d~~~~~~~~~~~~~g~~~~~~~~~~~~~cDIl~PcA~~~~I~~ 111 (230)
T d1leha1 37 LEGLAVSVQGLGNVAKALCKKLNTEGA----KLVVT-DVNKAAVSAAVAEEGADAVAPNAIYGVTCDIFAPCALGAVLND 111 (230)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHHHCCEECCGGGTTTCCCSEEEECSCSCCBST
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC----EEEee-cccHHHHHHHHHhcCCcccCCcccccccccEecccccccccCh
Confidence 356899999999999999999999998 99999 999988887776 6776654333334589999999654443 3
Q ss_pred HHHHHhccccCCCCEEEEec-CCCCHHHHHHhh
Q 024016 86 DVAMQIRPLLSRKKLLVSVA-AGVKLKDLQEWT 117 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~-~g~~~~~l~~~~ 117 (274)
+.+..|. -++|+... ++.......+.+
T Consensus 112 ~~~~~l~-----ak~Ive~ANn~~t~~ea~~~L 139 (230)
T d1leha1 112 FTIPQLK-----AKVIAGSADNQLKDPRHGKYL 139 (230)
T ss_dssp THHHHCC-----CSEECCSCSCCBSSHHHHHHH
T ss_pred HHhhccC-----ccEEEecccCCCCCchHHHHH
Confidence 4444443 24666555 444433333334
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.50 E-value=0.00029 Score=52.56 Aligned_cols=86 Identities=14% Similarity=0.135 Sum_probs=60.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee--ccCc-----hhh--------ccCCCE
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV--LSDN-----NAV--------VEYSDV 74 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~--~~~~-----~~~--------~~~aDi 74 (274)
..+|.|+|+|.+|...++.+...|. +|+++ ++++++.+.+++.|... ..+. .+. -..+|+
T Consensus 27 g~~vlV~G~G~vG~~~~~~ak~~Ga----~vi~v-~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~ 101 (170)
T d1e3ja2 27 GTTVLVIGAGPIGLVSVLAAKAYGA----FVVCT-ARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNV 101 (170)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSE
T ss_pred CCEEEEEcccccchhhHhhHhhhcc----ccccc-chHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCce
Confidence 3589999999999999998888897 99999 99999999888877532 1111 111 134799
Q ss_pred EEEeeCcc-cHHHHHHHhccccCCCCEEEEe
Q 024016 75 VVFSVKPQ-VVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 75 Iil~v~~~-~~~~v~~~i~~~l~~~~~vis~ 104 (274)
||-|+... .+...++- ++++..++..
T Consensus 102 vid~~g~~~~~~~a~~~----~~~~G~iv~~ 128 (170)
T d1e3ja2 102 TIDCSGNEKCITIGINI----TRTGGTLMLV 128 (170)
T ss_dssp EEECSCCHHHHHHHHHH----SCTTCEEEEC
T ss_pred eeecCCChHHHHHHHHH----HhcCCceEEE
Confidence 99998644 34444433 4555566644
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=97.45 E-value=3.7e-05 Score=55.67 Aligned_cols=97 Identities=12% Similarity=0.239 Sum_probs=72.3
Q ss_pred CCeEEEEcc----cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHH
Q 024016 10 SFILGFIGA----GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVK 85 (274)
Q Consensus 10 ~~~IgiIG~----G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~ 85 (274)
.++|+|||+ ++.|..+.++|.+.|| +++.+ +.++... .+ .|...+.+..++-...|++++++|++.+.
T Consensus 13 pksIAVVGaS~~~~k~g~~v~~~L~~~g~----~~~~v-~~~~~~~-~i--~g~~~~~~l~~i~~~iD~v~v~~p~~~v~ 84 (136)
T d1iuka_ 13 AKTIAVLGAHKDPSRPAHYVPRYLREQGY----RVLPV-NPRFQGE-EL--FGEEAVASLLDLKEPVDILDVFRPPSALM 84 (136)
T ss_dssp CCEEEEETCCSSTTSHHHHHHHHHHHTTC----EEEEE-CGGGTTS-EE--TTEECBSSGGGCCSCCSEEEECSCHHHHT
T ss_pred CCeEEEEeecCCCCCchHHHHHHHhcCCC----CceEE-Eeccccc-ee--eceecccchhhccCCCceEEEeccHHHHH
Confidence 358999997 8999999999999999 99999 7654311 11 57777888888777889999999999998
Q ss_pred HHHHHhccccCCCCEEEEecCCCCHHHHHHhh
Q 024016 86 DVAMQIRPLLSRKKLLVSVAAGVKLKDLQEWT 117 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~~g~~~~~l~~~~ 117 (274)
+++++.... ....+++ ..|...+++.++.
T Consensus 85 ~~v~~~~~~-g~k~i~~--q~G~~~~e~~~~a 113 (136)
T d1iuka_ 85 DHLPEVLAL-RPGLVWL--QSGIRHPEFEKAL 113 (136)
T ss_dssp TTHHHHHHH-CCSCEEE--CTTCCCHHHHHHH
T ss_pred HHHHHHHhh-CCCeEEE--ecCccCHHHHHHH
Confidence 888876543 3334443 4566655555544
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=97.40 E-value=0.00082 Score=49.15 Aligned_cols=68 Identities=7% Similarity=0.017 Sum_probs=49.8
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH----HHHHcCceec-cCc--hh-----hccCCCEEEEee
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD----AFESIGVKVL-SDN--NA-----VVEYSDVVVFSV 79 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~----~l~~~g~~~~-~~~--~~-----~~~~aDiIil~v 79 (274)
.|-|+|+|.+|..+++.|.+.|+ ++++. +.++++.. .+...|+.+. .+. .+ -+++||.+++++
T Consensus 5 HiII~G~g~~g~~l~~~L~~~~~----~v~vI-d~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~ 79 (153)
T d1id1a_ 5 HFIVCGHSILAINTILQLNQRGQ----NVTVI-SNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALS 79 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTC----CEEEE-ECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECS
T ss_pred EEEEECCCHHHHHHHHHHHHcCC----CEEEE-eccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEcc
Confidence 68899999999999999999998 99999 88876533 2333466432 221 12 256899999999
Q ss_pred CcccH
Q 024016 80 KPQVV 84 (274)
Q Consensus 80 ~~~~~ 84 (274)
+++..
T Consensus 80 ~~d~~ 84 (153)
T d1id1a_ 80 DNDAD 84 (153)
T ss_dssp SCHHH
T ss_pred ccHHH
Confidence 86643
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.39 E-value=0.0002 Score=53.80 Aligned_cols=75 Identities=16% Similarity=0.189 Sum_probs=45.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH-HHHHHHcCcee------------------ccCchhhcc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-RDAFESIGVKV------------------LSDNNAVVE 70 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~-~~~l~~~g~~~------------------~~~~~~~~~ 70 (274)
++||||.|.|+||+.+.+.+....- -+|...++.++.. ...+.+.+... ..+..++.+
T Consensus 2 ~irIaINGfGRIGR~v~Ral~~~~d---ieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (172)
T d2czca2 2 KVKVGVNGYGTIGKRVAYAVTKQDD---MELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLE 78 (172)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTT---EEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHT
T ss_pred cEEEEEECCCHHHHHHHHHHHhCCC---ceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhc
Confidence 4699999999999999999987542 2555554665533 33444433221 112233445
Q ss_pred CCCEEEEeeCcccHHHH
Q 024016 71 YSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 71 ~aDiIil~v~~~~~~~v 87 (274)
++|+|+-|++...-.+-
T Consensus 79 ~vDvViEcTG~f~~~~~ 95 (172)
T d2czca2 79 KVDIIVDATPGGIGAKN 95 (172)
T ss_dssp TCSEEEECCSTTHHHHH
T ss_pred cCCEEEECCCCCCCHHH
Confidence 67777777765544333
|
| >d2pv7a1 a.100.1.12 (A:244-371) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: TyrA dimerization domain-like domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=97.37 E-value=0.00025 Score=50.55 Aligned_cols=77 Identities=12% Similarity=-0.014 Sum_probs=55.2
Q ss_pred ccchhhHHHhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH----HHHHHHhcCCChHHHHHhcCCCCchHH
Q 024016 169 EKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLG----AASMVTKSGKHPGQLKDDVASPGGTTI 244 (274)
Q Consensus 169 e~~~~~~~a~~~~~~~~~~~~~~~l~e~~~~~Gl~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~t~ 244 (274)
..+||..++.+++.|++++. +++....+.+.+......+..++++. +.+++ +.+|++|.+.+..+... .
T Consensus 2 a~eHD~~~A~ishLpH~~~~---al~~~l~~~~~~~~~~~~~a~~~fr~~l~~~tRIa---~~~p~lw~dI~~~N~~~-~ 74 (128)
T d2pv7a1 2 ATEHDHNMTYIQALRHFSTF---ANGLHLSKQPINLANLLALSSPIYRLELAMIGRLF---AQDAELYADIIMDKSEN-L 74 (128)
T ss_dssp HHHHHHHHHHHTHHHHHHHH---HHHHHHTTSSCCHHHHHHTCCHHHHHHHHHHHHHH---TSCHHHHHHHHC----C-H
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHcCcchhHHHHHccHhHhhHHHHHHHHH---CCCHHHHHHHHHHCHHH-H
Confidence 45799999999999988754 45555667888988888888888764 56665 46899999999887654 4
Q ss_pred HHHHHHHh
Q 024016 245 AGIHELEK 252 (274)
Q Consensus 245 ~~l~~l~~ 252 (274)
..++.+.+
T Consensus 75 ~~l~~~~~ 82 (128)
T d2pv7a1 75 AVIETLKQ 82 (128)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55655544
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=97.34 E-value=0.00091 Score=50.18 Aligned_cols=101 Identities=16% Similarity=0.147 Sum_probs=62.6
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCC---CCCcEEEEeCCCHH--HHHHHH----H------cCceeccCchhhccCC
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVL---PPDRICTAVHSNLK--RRDAFE----S------IGVKVLSDNNAVVEYS 72 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~---~~~~v~v~~~r~~~--~~~~l~----~------~g~~~~~~~~~~~~~a 72 (274)
+..||.|+|+ |.+|.+++..|...... ...++.++ |..+. .++.+. . ......++..+..+++
T Consensus 23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~-di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~a 101 (175)
T d7mdha1 23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLL-GSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDV 101 (175)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEE-CCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTC
T ss_pred CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEe-cCccccchhcchhhhhcccccccccCccccccchhhccCC
Confidence 3458999996 99999999998864321 12256677 76553 223222 1 1234566778889999
Q ss_pred CEEEEee--C--cc-c-----------HHHHHHHhccccCCCCEEEEecCCCCH
Q 024016 73 DVVVFSV--K--PQ-V-----------VKDVAMQIRPLLSRKKLLVSVAAGVKL 110 (274)
Q Consensus 73 DiIil~v--~--~~-~-----------~~~v~~~i~~~l~~~~~vis~~~g~~~ 110 (274)
|+||++- | |. . ++++.+.+..+-+++..|+-.++++..
T Consensus 102 DvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~ 155 (175)
T d7mdha1 102 DWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNT 155 (175)
T ss_dssp SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred ceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHH
Confidence 9999986 2 21 1 333444555555566666666665443
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=97.23 E-value=0.00022 Score=53.98 Aligned_cols=102 Identities=17% Similarity=0.208 Sum_probs=63.3
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEE-EEeCCC--H---HHHHHHHH--cC-----ceeccCchhhccCCCEE
Q 024016 10 SFILGFIG-AGKMAESIAKGVAKSGVLPPDRIC-TAVHSN--L---KRRDAFES--IG-----VKVLSDNNAVVEYSDVV 75 (274)
Q Consensus 10 ~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~-v~~~r~--~---~~~~~l~~--~g-----~~~~~~~~~~~~~aDiI 75 (274)
|+||+||| .|..|.-+.+-|.++-++ ++. ++ .++ . ++...... .+ .....+......++|++
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~---ei~~l~-~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvv 76 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHM---TITALT-VSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVV 76 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTE---EEEEEE-EETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEE
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCC---ceEeeE-eecccccccccccccccccccccccccccchhhhhhhccccee
Confidence 47999998 599999999988876432 443 33 221 1 12222211 11 11223334445689999
Q ss_pred EEeeCcccHHHHHHHhccccCCCCEEEEecCCCCH---HHHHHhhC
Q 024016 76 VFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVKL---KDLQEWTG 118 (274)
Q Consensus 76 il~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~~---~~l~~~~~ 118 (274)
|+|+|+....+....+. ..+..+|+.++.... ....++.+
T Consensus 77 f~alp~~~s~~~~~~~~---~~~~~vIDlSadfRl~~~~~~~~~y~ 119 (179)
T d2g17a1 77 FLATAHEVSHDLAPQFL---QAGCVVFDLSGAFRVNDRAFYEKYYG 119 (179)
T ss_dssp EECSCHHHHHHHHHHHH---HTTCEEEECSSTTSSSCHHHHHHHHC
T ss_pred eccccchhHHHHhhhhh---hcCceeeccccccccccccccccccc
Confidence 99999988777776654 367789998776653 34445544
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=97.20 E-value=0.00084 Score=47.60 Aligned_cols=88 Identities=9% Similarity=0.063 Sum_probs=58.9
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec-cCc--hh-----hccCCCEEEEeeCccc
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDN--NA-----VVEYSDVVVFSVKPQV 83 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~-~~~--~~-----~~~~aDiIil~v~~~~ 83 (274)
.|-|+|.|.+|..+++.|. |+ +|.+. +.++++.+.+...|+.+. .|+ .+ -+++|+.++++++++.
T Consensus 2 HivI~G~g~~g~~l~~~L~--~~----~i~vi-~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~ 74 (129)
T d2fy8a1 2 HVVICGWSESTLECLRELR--GS----EVFVL-AEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDS 74 (129)
T ss_dssp CEEEESCCHHHHHHHHTSC--GG----GEEEE-ESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHH
T ss_pred EEEEECCCHHHHHHHHHHc--CC----CCEEE-EcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchh
Confidence 4779999999999999984 55 78888 899999988888776542 222 22 2568999999987665
Q ss_pred HHHHHHHhccccCCCCEEEEecC
Q 024016 84 VKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
..-.+-.....+.|...++....
T Consensus 75 ~n~~~~~~~r~~~~~~~iia~~~ 97 (129)
T d2fy8a1 75 ETIHCILGIRKIDESVRIIAEAE 97 (129)
T ss_dssp HHHHHHHHHHHHCSSSCEEEECS
T ss_pred hhHHHHHHHHHHCCCceEEEEEc
Confidence 43333222223445534444433
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.20 E-value=0.0022 Score=45.85 Aligned_cols=82 Identities=17% Similarity=0.199 Sum_probs=55.1
Q ss_pred eEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhh-ccCCCEEEEeeCcccHHHHHH
Q 024016 12 ILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAV-VEYSDVVVFSVKPQVVKDVAM 89 (274)
Q Consensus 12 ~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~-~~~aDiIil~v~~~~~~~v~~ 89 (274)
||+|+| .|+||+.+++.+.+... .++..-.++... .... -.++|+||=.+.|+.+.+.++
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~---~~l~~~~d~~~~---------------~~~~~~~~~DvvIDFS~p~~~~~~~~ 62 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADD---LTLSAELDAGDP---------------LSLLTDGNTEVVIDFTHPDVVMGNLE 62 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTT---SEEEEEECTTCC---------------THHHHTTTCSEEEECCCTTTHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHHhCCC---CEEEEEEecCCc---------------hhhhccccCCEEEEcccHHHHHHHHH
Confidence 799999 59999999998776532 154433255321 1111 246899999999999888887
Q ss_pred HhccccCCCCEEEEecCCCCHHHHH
Q 024016 90 QIRPLLSRKKLLVSVAAGVKLKDLQ 114 (274)
Q Consensus 90 ~i~~~l~~~~~vis~~~g~~~~~l~ 114 (274)
.... .+..+|.-+.|.+.++++
T Consensus 63 ~~~~---~~~~~ViGTTG~~~~~~~ 84 (135)
T d1yl7a1 63 FLID---NGIHAVVGTTGFTAERFQ 84 (135)
T ss_dssp HHHH---TTCEEEECCCCCCHHHHH
T ss_pred HHHh---cCCCEEEeccccchhHHH
Confidence 6543 345566677888865544
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=97.12 E-value=0.00029 Score=53.05 Aligned_cols=101 Identities=16% Similarity=0.242 Sum_probs=62.8
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH--HHHHHHH--cC-cee-ccCchhhccCCCEEEEeeCcc
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLK--RRDAFES--IG-VKV-LSDNNAVVEYSDVVVFSVKPQ 82 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~--~~~~l~~--~g-~~~-~~~~~~~~~~aDiIil~v~~~ 82 (274)
|+||||+|+ |..|.-+.+-|.++-+ .++.....++.. +...... .+ ... ..++++..+++|++|+|+|..
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~---~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~ 77 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPE---AKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAG 77 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTT---EEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTT
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCC---ceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccH
Confidence 469999976 9999999998876543 244433143322 2222221 11 111 134445556899999999988
Q ss_pred cHHHHHHHhccccCCCCEEEEecCCCCH---HHHHHhhC
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSVAAGVKL---KDLQEWTG 118 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~~~g~~~---~~l~~~~~ 118 (274)
...+.... . .+..||+.++.... +..+++.+
T Consensus 78 ~s~~~~~~----~-~~~~VIDlSadfRl~~~~~y~~~Y~ 111 (176)
T d1vkna1 78 ASYDLVRE----L-KGVKIIDLGADFRFDDPGVYREWYG 111 (176)
T ss_dssp HHHHHHTT----C-CSCEEEESSSTTTCSSHHHHHHHHC
T ss_pred HHHHHHHh----h-ccceEEecCccccccchhhHHHhhc
Confidence 77665543 2 56789999887764 34555554
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.11 E-value=0.0007 Score=51.05 Aligned_cols=50 Identities=16% Similarity=0.110 Sum_probs=41.4
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~ 60 (274)
.+...+|.|+|+|.+|...++.+...|. .+|++. ++++++.+.+++.|+.
T Consensus 26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga---~~Vi~~-~~~~~~~~~a~~lGa~ 75 (182)
T d1vj0a2 26 SFAGKTVVIQGAGPLGLFGVVIARSLGA---ENVIVI-AGSPNRLKLAEEIGAD 75 (182)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTB---SEEEEE-ESCHHHHHHHHHTTCS
T ss_pred CCCCCEEEEECCCccchhheeccccccc---cccccc-ccccccccccccccce
Confidence 3345689999999999998888888885 268999 9999999888888763
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=97.06 E-value=0.00046 Score=47.78 Aligned_cols=41 Identities=12% Similarity=0.280 Sum_probs=34.9
Q ss_pred CCCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH
Q 024016 4 FPIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK 49 (274)
Q Consensus 4 ~~~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~ 49 (274)
-|......||||||.|.+|..|+....+-|+ ++.++ +++++
T Consensus 5 ~~~~~~~~kigIlGgGQL~rMla~aA~~lG~----~v~v~-d~~~~ 45 (111)
T d1kjqa2 5 TALRPAATRVMLLGSGELGKEVAIECQRLGV----EVIAV-DRYAD 45 (111)
T ss_dssp CTTSTTCCEEEEESCSHHHHHHHHHHHTTTC----EEEEE-ESSTT
T ss_pred CCCCCCCCEEEEEeCCHHHHHHHHHHHHCCC----EEEEE-cCCCC
Confidence 3444456799999999999999999999999 99999 88754
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=97.04 E-value=0.00079 Score=50.34 Aligned_cols=74 Identities=11% Similarity=0.136 Sum_probs=45.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH-HHHHHHcCc------------------eeccCchhhcc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-RDAFESIGV------------------KVLSDNNAVVE 70 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~-~~~l~~~g~------------------~~~~~~~~~~~ 70 (274)
|.||||-|.|++|+.+.+.+...+. -++...+++++.. ...+...+. .+..+..++.+
T Consensus 1 M~~VgINGfGRIGR~v~R~l~~~~d---i~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~ 77 (171)
T d1cf2o1 1 MKAVAINGYGTVGKRVADAIAQQDD---MKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLD 77 (171)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTSSS---EEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHH
T ss_pred CeEEEEEcCcHHHHHHHHHHHhCCC---ceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhc
Confidence 3589999999999999999887763 2666554665432 233333222 11122334456
Q ss_pred CCCEEEEeeCcccHHH
Q 024016 71 YSDVVVFSVKPQVVKD 86 (274)
Q Consensus 71 ~aDiIil~v~~~~~~~ 86 (274)
++|+|+-|++...-.+
T Consensus 78 ~vDvViEcTG~f~~~~ 93 (171)
T d1cf2o1 78 EADIVIDCTPEGIGAK 93 (171)
T ss_dssp TCSEEEECCSTTHHHH
T ss_pred CCCEEEEccCCCCCHH
Confidence 7888888887654433
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.02 E-value=0.0015 Score=48.93 Aligned_cols=87 Identities=14% Similarity=0.114 Sum_probs=59.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec-cC----chhh----c--cCCCEEEEe
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SD----NNAV----V--EYSDVVVFS 78 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~-~~----~~~~----~--~~aDiIil~ 78 (274)
..+|.|+|+|.+|...++.+...|. .+|++. +++++|.+.+.+.|+..+ +. ..+. . ...|+||-|
T Consensus 28 g~~VlI~GaG~vGl~~~q~ak~~Ga---~~Vi~~-d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~ 103 (174)
T d1jqba2 28 GSSVVVIGIGAVGLMGIAGAKLRGA---GRIIGV-GSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMA 103 (174)
T ss_dssp TCCEEEECCSHHHHHHHHHHHTTTC---SCEEEE-CCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEEC
T ss_pred CCEEEEEcCCcchhhhhhhhhcccc---cccccc-cchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEc
Confidence 4589999999999998888888875 268999 999999988888886421 11 1111 1 237999999
Q ss_pred eC-cccHHHHHHHhccccCCCCEEEEe
Q 024016 79 VK-PQVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 79 v~-~~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
+. +..++..+.-+ +++..++.+
T Consensus 104 ~g~~~~~~~a~~~~----~~~G~iv~~ 126 (174)
T d1jqba2 104 GGGSETLSQAVKMV----KPGGIISNI 126 (174)
T ss_dssp SSCTTHHHHHHHHE----EEEEEEEEC
T ss_pred cCCHHHHHHHHHHH----hcCCEEEEE
Confidence 96 44455555443 344455543
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.02 E-value=0.00022 Score=52.52 Aligned_cols=94 Identities=16% Similarity=0.223 Sum_probs=59.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH--cCceeccCchhhccCCCEEEEeeCcccHHHH
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES--IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~--~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v 87 (274)
.||||||+ |-.|.-+.+-|.++.+ +..++... ..+...-+.+.. ..........+...+.|++|+|+|+....+.
T Consensus 2 ~kVaIvGATGyvG~eLirlL~~H~f-p~~~l~~~-~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~s~~~ 79 (154)
T d2gz1a1 2 YTVAVVGATGAVGAQMIKMLEESTL-PIDKIRYL-ASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSSTSAKY 79 (154)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCS-CEEEEEEE-ECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHcCCC-CceEEEEe-cccccccccccccCCcccccccchhhhhhhhhhhhccCccchhhH
Confidence 38999988 9999999988877654 22345544 322111111111 1122223344556789999999998877666
Q ss_pred HHHhccccCCCCEEEEecCCCC
Q 024016 88 AMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 88 ~~~i~~~l~~~~~vis~~~g~~ 109 (274)
..+.. ..+..||+.++...
T Consensus 80 ~~~~~---~~~~~VIDlSsdfR 98 (154)
T d2gz1a1 80 APYAV---KAGVVVVDNTSYFR 98 (154)
T ss_dssp HHHHH---HTTCEEEECSSTTT
T ss_pred Hhhhc---cccceehhcChhhh
Confidence 65543 46789999877654
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=97.00 E-value=0.00077 Score=51.02 Aligned_cols=94 Identities=15% Similarity=0.184 Sum_probs=56.9
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH--HHHHHHH--cC--c-eeccCchhhccCCCEEEEee
Q 024016 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLK--RRDAFES--IG--V-KVLSDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~--~~~~l~~--~g--~-~~~~~~~~~~~~aDiIil~v 79 (274)
+++.||||||+ |-.|.-+.+-|.++-+ .++.....++.. +...... .+ . .......+...++|++|+|+
T Consensus 3 ~~kikVaIlGATGyvG~elirLL~~HP~---~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~al 79 (183)
T d2cvoa1 3 GEEVRIAVLGASGYTGAEIVRLLANHPQ---FRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCL 79 (183)
T ss_dssp SSCEEEEEESCSSHHHHHHHHHHTTCSS---EEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECC
T ss_pred CCccEEEEECcccHHHHHHHHHHHhCCC---ceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeecc
Confidence 46789999976 9999999998876533 255433133321 2222221 11 1 11122334567899999999
Q ss_pred CcccHHHHHHHhccccCCCCEEEEecCCC
Q 024016 80 KPQVVKDVAMQIRPLLSRKKLLVSVAAGV 108 (274)
Q Consensus 80 ~~~~~~~v~~~i~~~l~~~~~vis~~~g~ 108 (274)
|.....++...+. ....+|...+..
T Consensus 80 p~~~s~~~~~~l~----~~~~~v~~~~~~ 104 (183)
T d2cvoa1 80 PHGTTQEIIKGLP----QELKIVDLSADF 104 (183)
T ss_dssp SSSHHHHHHHTSC----SSCEEEECSSTT
T ss_pred ccchHHHHHHHHH----hcCcccccchhh
Confidence 9998887776543 334556555544
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=96.96 E-value=0.00085 Score=51.06 Aligned_cols=47 Identities=13% Similarity=0.086 Sum_probs=40.0
Q ss_pred CCCCCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH
Q 024016 5 PIPAESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (274)
Q Consensus 5 ~~~~~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~ 56 (274)
+...+.++|-|.| .|.+|..+++.|.+.|. +|++. +|++++.+++.+
T Consensus 18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~----~V~~~-~r~~~~~~~~~~ 65 (191)
T d1luaa1 18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGA----EVVLC-GRKLDKAQAAAD 65 (191)
T ss_dssp TSCCTTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHhhcc----chhhc-ccchHHHHHHHH
Confidence 3345668898888 69999999999999999 99999 999998877664
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.94 E-value=0.001 Score=47.72 Aligned_cols=90 Identities=21% Similarity=0.263 Sum_probs=64.6
Q ss_pred CCCeEEEEcc----------cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH-------HHHHH----cCceeccCchh
Q 024016 9 ESFILGFIGA----------GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR-------DAFES----IGVKVLSDNNA 67 (274)
Q Consensus 9 ~~~~IgiIG~----------G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~-------~~l~~----~g~~~~~~~~~ 67 (274)
...||+|+|+ +.-...++..|.+.|. +|.+| |+.-... +.+.. .+.....++.+
T Consensus 12 ~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~----~V~~~-DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 86 (136)
T d1mv8a3 12 DTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGY----ELRIF-DRNVEYARVHGANKEYIESKIPHVSSLLVSDLDE 86 (136)
T ss_dssp SCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTC----EEEEE-CHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHH
T ss_pred CCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhc----ccccc-CCCCCHHHHhhhhhhhhhhccccccceeehhhhh
Confidence 4579999997 4677889999999998 99999 7632211 11111 23345678889
Q ss_pred hccCCCEEEEeeCcccHHHHHHHhccccCCCCEEEEecCC
Q 024016 68 VVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 68 ~~~~aDiIil~v~~~~~~~v~~~i~~~l~~~~~vis~~~g 107 (274)
+++++|+|+++++.+...++... ..++++|+++-+-
T Consensus 87 ~i~~~D~ivi~t~h~~f~~l~~~----~~~~~~I~D~~~~ 122 (136)
T d1mv8a3 87 VVASSDVLVLGNGDELFVDLVNK----TPSGKKLVDLVGF 122 (136)
T ss_dssp HHHHCSEEEECSCCGGGHHHHHS----CCTTCEEEESSSC
T ss_pred hhhhceEEEEEeCCHHHHHHHHH----hcCCCEEEECCCC
Confidence 99999999999998887765433 4567788887543
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.88 E-value=0.0014 Score=48.38 Aligned_cols=47 Identities=9% Similarity=0.198 Sum_probs=41.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV 61 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~ 61 (274)
..+|.|+|+|.+|...+..+...|. +|++. ++++++.+.+++.|+..
T Consensus 28 g~~vlv~G~G~iG~~a~~~a~~~g~----~v~~~-~~~~~r~~~~k~~Ga~~ 74 (168)
T d1rjwa2 28 GEWVAIYGIGGLGHVAVQYAKAMGL----NVVAV-DIGDEKLELAKELGADL 74 (168)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHTTCSE
T ss_pred CCEEEEeecccchhhhhHHHhcCCC----eEecc-CCCHHHhhhhhhcCcce
Confidence 4689999999999999888888888 89999 99999999888888653
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.85 E-value=0.0036 Score=46.77 Aligned_cols=76 Identities=16% Similarity=0.124 Sum_probs=55.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec-cCc-----hh-h-----ccCCCEEE
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-SDN-----NA-V-----VEYSDVVV 76 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~-~~~-----~~-~-----~~~aDiIi 76 (274)
...+|.|+|+|.+|...++.+...|. .+|++. |+++++.+..++.|+... ++. .+ . -...|++|
T Consensus 29 ~g~tVlI~G~GgvGl~ai~~ak~~G~---~~Vi~v-d~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi 104 (176)
T d1d1ta2 29 PGSTCVVFGLGGVGLSVIMGCKSAGA---SRIIGI-DLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTF 104 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-CSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEE
T ss_pred CCCEEEEECCCchhHHHHHHHHHcCC---ceEEEe-cCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEE
Confidence 34589999999999999999998885 279999 999999998888887532 111 11 1 13588888
Q ss_pred EeeCcc-cHHHHH
Q 024016 77 FSVKPQ-VVKDVA 88 (274)
Q Consensus 77 l~v~~~-~~~~v~ 88 (274)
.++... ..++.+
T Consensus 105 ~~~g~~~~~~~a~ 117 (176)
T d1d1ta2 105 EVIGHLETMIDAL 117 (176)
T ss_dssp ECSCCHHHHHHHH
T ss_pred EeCCchHHHHHHH
Confidence 888543 444444
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.85 E-value=0.00098 Score=49.52 Aligned_cols=86 Identities=17% Similarity=0.294 Sum_probs=60.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec-c--Cc---hhhccCCCEEEEeeC-cc
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL-S--DN---NAVVEYSDVVVFSVK-PQ 82 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~-~--~~---~~~~~~aDiIil~v~-~~ 82 (274)
..+|.|+|+|.+|...++-+...|. ++++. ++++++.+.+++.|+... + +. ....+..|++|-|+. +.
T Consensus 31 G~~VlI~GaG~vG~~a~qlak~~Ga----~~i~~-~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~~ 105 (168)
T d1uufa2 31 GKKVGVVGIGGLGHMGIKLAHAMGA----HVVAF-TTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPH 105 (168)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCC
T ss_pred CCEEEEeccchHHHHHHHHhhcccc----cchhh-ccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecch
Confidence 4689999999999999988888897 88888 888888888878886422 1 11 122346899999996 44
Q ss_pred cHHHHHHHhccccCCCCEEEEe
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~ 104 (274)
.+...+.-+ +++-.++.+
T Consensus 106 ~~~~~~~~l----~~~G~iv~~ 123 (168)
T d1uufa2 106 NLDDFTTLL----KRDGTMTLV 123 (168)
T ss_dssp CHHHHHTTE----EEEEEEEEC
T ss_pred hHHHHHHHH----hcCCEEEEe
Confidence 566555433 344455543
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=96.83 E-value=0.0038 Score=46.50 Aligned_cols=76 Identities=14% Similarity=0.124 Sum_probs=54.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCc-------hhhc-----cCCCEEE
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDN-------NAVV-----EYSDVVV 76 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~-------~~~~-----~~aDiIi 76 (274)
...+|.|+|+|.+|...++.+...|. .+|++. ++++++.+..++.|++..-+. .+.. ...|++|
T Consensus 27 ~G~~VlV~GaGgvGl~a~~~ak~~G~---~~Vi~~-d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vi 102 (174)
T d1p0fa2 27 PGSTCAVFGLGGVGFSAIVGCKAAGA---SRIIGV-GTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAV 102 (174)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTC---SEEEEE-CSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CCCEEEEECCCchhHHHHHHHHHcCC---ceeecc-CChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEE
Confidence 34689999999999999999988885 268888 999999998888887532111 1111 2479999
Q ss_pred EeeCc-ccHHHHH
Q 024016 77 FSVKP-QVVKDVA 88 (274)
Q Consensus 77 l~v~~-~~~~~v~ 88 (274)
.|+.. +...+.+
T Consensus 103 d~~g~~~~~~~~~ 115 (174)
T d1p0fa2 103 ECAGRIETMMNAL 115 (174)
T ss_dssp ECSCCHHHHHHHH
T ss_pred EcCCCchHHHHHH
Confidence 98854 3344443
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.79 E-value=0.00017 Score=51.33 Aligned_cols=79 Identities=10% Similarity=0.089 Sum_probs=52.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHh-CCCCCCCcEEEEeCCCHHHHHHHHHcCceec--cCchhhc-cCCCEEEEeeCcccHH
Q 024016 10 SFILGFIGAGKMAESIAKGVAK-SGVLPPDRICTAVHSNLKRRDAFESIGVKVL--SDNNAVV-EYSDVVVFSVKPQVVK 85 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~-~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~--~~~~~~~-~~aDiIil~v~~~~~~ 85 (274)
..+|.|+|+|++|.++++.+.. .+| ++..+.|-++++..... .|+.+. +...+.. +..++.++++|....+
T Consensus 3 ~~~v~I~GaG~~G~~l~~~l~~~~~~----~iv~fiDdd~~k~G~~I-~Gi~V~~~~~l~~~~~~~i~iai~~i~~~~~~ 77 (126)
T d2dt5a2 3 KWGLCIVGMGRLGSALADYPGFGESF----ELRGFFDVDPEKVGRPV-RGGVIEHVDLLPQRVPGRIEIALLTVPREAAQ 77 (126)
T ss_dssp CEEEEEECCSHHHHHHHHCSCCCSSE----EEEEEEESCTTTTTCEE-TTEEEEEGGGHHHHSTTTCCEEEECSCHHHHH
T ss_pred CceEEEEcCCHHHHHHHHhHhhcCCc----EEEEEEeCchHhcCCEE-CCEEEecHHHHHHHHhhcccEEEEeCCHHHHH
Confidence 3489999999999999987653 455 77666577775432111 466654 2222222 3578888899988888
Q ss_pred HHHHHhcc
Q 024016 86 DVAMQIRP 93 (274)
Q Consensus 86 ~v~~~i~~ 93 (274)
+++..+..
T Consensus 78 ~I~d~l~~ 85 (126)
T d2dt5a2 78 KAADLLVA 85 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88776543
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.79 E-value=0.0049 Score=45.93 Aligned_cols=77 Identities=17% Similarity=0.126 Sum_probs=55.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCc---h----hh-----ccCCCEEE
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDN---N----AV-----VEYSDVVV 76 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~---~----~~-----~~~aDiIi 76 (274)
...+|.|+|+|.+|...+..+...|. ..|++. +++++|.+..++.|+...-+. + .. -..+|++|
T Consensus 28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga---~~Vi~~-d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vi 103 (174)
T d1e3ia2 28 PGSTCAVFGLGCVGLSAIIGCKIAGA---SRIIAI-DINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSL 103 (174)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-CSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEE
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCC---ceeeee-ccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEE
Confidence 34689999999999999998888886 268888 999999988888886432111 1 11 13579999
Q ss_pred EeeCc-ccHHHHHH
Q 024016 77 FSVKP-QVVKDVAM 89 (274)
Q Consensus 77 l~v~~-~~~~~v~~ 89 (274)
-|+.. ..+...++
T Consensus 104 e~~G~~~~~~~a~~ 117 (174)
T d1e3ia2 104 DCAGTAQTLKAAVD 117 (174)
T ss_dssp ESSCCHHHHHHHHH
T ss_pred EecccchHHHHHHH
Confidence 99864 44545444
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.76 E-value=0.0026 Score=46.93 Aligned_cols=46 Identities=9% Similarity=0.180 Sum_probs=40.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~ 60 (274)
..+|.|+|+|.+|...+..+...|. +|++. ++++++.+.+++.|+.
T Consensus 28 g~~VlV~GaG~vG~~~~~~ak~~G~----~Vi~~-~~~~~~~~~a~~~Ga~ 73 (166)
T d1llua2 28 GQWVAISGIGGLGHVAVQYARAMGL----HVAAI-DIDDAKLELARKLGAS 73 (166)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHTTCS
T ss_pred CCEEEEeeccccHHHHHHHHHHcCC----cccee-cchhhHHHhhhccCcc
Confidence 4689999999999999988888887 99999 9999999888888864
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=96.75 E-value=0.0021 Score=48.31 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=31.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
..+||.|||.|.-|..-|..|.+.|| +|++| ++++
T Consensus 42 ~~k~V~IIGaGPAGL~AA~~la~~G~----~Vtl~-E~~~ 76 (179)
T d1ps9a3 42 QKKNLAVVGAGPAGLAFAINAAARGH----QVTLF-DAHS 76 (179)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTC----EEEEE-ESSS
T ss_pred CCcEEEEECccHHHHHHHHHHHhhcc----ceEEE-eccC
Confidence 45799999999999999999999999 99999 7764
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=96.73 E-value=0.0014 Score=48.47 Aligned_cols=73 Identities=15% Similarity=0.254 Sum_probs=55.7
Q ss_pred CCCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccH
Q 024016 7 PAESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~G~-mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~ 84 (274)
....++|.|||-+. +|.+++.-|.+.|. .|+++ ++.. .+..+.+++||+||.++. |..+
T Consensus 34 ~l~GK~v~VIGrS~~VG~Pla~lL~~~ga----tVt~~-h~~t--------------~~l~~~~~~ADivI~a~G~p~~i 94 (166)
T d1b0aa1 34 DTFGLNAVVIGASNIVGRPMSMELLLAGC----TTTVT-HRFT--------------KNLRHHVENADLLIVAVGKPGFI 94 (166)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHTTTC----EEEEE-CSSC--------------SCHHHHHHHCSEEEECSCCTTCB
T ss_pred ccccceEEEEeccccccHHHHHHHHHhhc----ccccc-cccc--------------chhHHHHhhhhHhhhhccCcccc
Confidence 34568999999987 99999999999988 89988 6432 234556788999999994 5543
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
. ...+++|.++|++
T Consensus 95 ~------~~~vk~g~vvIDv 108 (166)
T d1b0aa1 95 P------GDWIKEGAIVIDV 108 (166)
T ss_dssp C------TTTSCTTCEEEEC
T ss_pred c------ccccCCCcEEEec
Confidence 2 2357899999986
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.72 E-value=0.00075 Score=49.23 Aligned_cols=34 Identities=12% Similarity=0.205 Sum_probs=30.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS 46 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r 46 (274)
.+.++|.|||.|.+|..-++.|++.|- +|+++ .+
T Consensus 11 l~gkrvLViGgG~va~~ka~~Ll~~GA----~VtVv-ap 44 (150)
T d1kyqa1 11 LKDKRILLIGGGEVGLTRLYKLMPTGC----KLTLV-SP 44 (150)
T ss_dssp CTTCEEEEEEESHHHHHHHHHHGGGTC----EEEEE-EE
T ss_pred eCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEE-eC
Confidence 356899999999999999999999998 99999 54
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.72 E-value=0.00073 Score=52.37 Aligned_cols=65 Identities=11% Similarity=0.121 Sum_probs=46.1
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcE--EEEeCCCHHHHHHHHHcCcee-------ccCchhhccCCCEEEEe
Q 024016 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRI--CTAVHSNLKRRDAFESIGVKV-------LSDNNAVVEYSDVVVFS 78 (274)
Q Consensus 9 ~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v--~v~~~r~~~~~~~l~~~g~~~-------~~~~~~~~~~aDiIil~ 78 (274)
+++||.|.| .|.+|+++++.|++.|+ ++ +.. .|++++.+.+.. ++.. ..+..++++++|.||.+
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~----~v~v~~~-~R~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~d~vi~~ 75 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSD----KFVAKGL-VRSAQGKEKIGG-EADVFIGDITDADSINPAFQGIDALVIL 75 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTT----TCEEEEE-ESCHHHHHHTTC-CTTEEECCTTSHHHHHHHHTTCSEEEEC
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC----cEEEEEE-cCCHHHHHhccC-CcEEEEeeeccccccccccccceeeEEE
Confidence 467999998 69999999999999997 54 445 788877665443 2221 11224456788998877
Q ss_pred e
Q 024016 79 V 79 (274)
Q Consensus 79 v 79 (274)
.
T Consensus 76 a 76 (252)
T d2q46a1 76 T 76 (252)
T ss_dssp C
T ss_pred E
Confidence 5
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.68 E-value=0.0011 Score=49.18 Aligned_cols=66 Identities=12% Similarity=0.224 Sum_probs=50.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-cc--Cch----hhccCCCEEEEeeC
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-LS--DNN----AVVEYSDVVVFSVK 80 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~-~~--~~~----~~~~~aDiIil~v~ 80 (274)
..+|.|+|+|.+|...++.+...|. +|+++ ++++++.+.+++.|+.. .+ +.. ......|.++.|+.
T Consensus 28 g~~vlI~GaG~vG~~a~q~ak~~G~----~vi~~-~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~ 100 (168)
T d1piwa2 28 GKKVGIVGLGGIGSMGTLISKAMGA----ETYVI-SRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCAS 100 (168)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTC----EEEEE-ESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCS
T ss_pred CCEEEEECCCCcchhHHHHhhhccc----ccccc-ccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEec
Confidence 4689999999999998888888888 99999 99999999888888642 11 111 12335688888764
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=96.65 E-value=0.002 Score=51.95 Aligned_cols=68 Identities=16% Similarity=0.242 Sum_probs=48.5
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH-----HHH---HHHHcCceec-c---C---chhhccCC
Q 024016 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-----RRD---AFESIGVKVL-S---D---NNAVVEYS 72 (274)
Q Consensus 9 ~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~-----~~~---~l~~~g~~~~-~---~---~~~~~~~a 72 (274)
+++||.|+| +|.+|+.++..|++.|| +|++. .|++. +.+ .+...++.+. . + ..+...++
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G~----~V~~~-~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~ 76 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLGH----PTYVL-FRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQV 76 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTC----CEEEE-CCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCC----EEEEE-ECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCc
Confidence 567999998 59999999999999999 99999 88642 222 2233455432 1 1 23456788
Q ss_pred CEEEEeeCc
Q 024016 73 DVVVFSVKP 81 (274)
Q Consensus 73 DiIil~v~~ 81 (274)
+.++.+.++
T Consensus 77 ~~~~~~~~~ 85 (312)
T d1qyda_ 77 DVVISALAG 85 (312)
T ss_dssp SEEEECCCC
T ss_pred chhhhhhhh
Confidence 999988754
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.64 E-value=0.0024 Score=47.63 Aligned_cols=77 Identities=16% Similarity=0.112 Sum_probs=53.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce-ecc-C---chhhc-----cCCCEEEEe
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK-VLS-D---NNAVV-----EYSDVVVFS 78 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~-~~~-~---~~~~~-----~~aDiIil~ 78 (274)
...+|.|+|+|.+|...+..+...|. ..|++. ++++++.+.+++.|+. +.+ + ..+.+ ...|+||-|
T Consensus 28 ~g~~VlI~G~G~iG~~~~~~ak~~g~---~~v~~~-~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~ 103 (174)
T d1f8fa2 28 PASSFVTWGAGAVGLSALLAAKVCGA---SIIIAV-DIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALES 103 (174)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHHTC---SEEEEE-ESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEEC
T ss_pred CCCEEEEeCCCHHHhhhhhccccccc---ceeeee-ccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEc
Confidence 34689999999999999988888886 256677 8999999888888863 221 1 11211 136888888
Q ss_pred eCcc-cHHHHHH
Q 024016 79 VKPQ-VVKDVAM 89 (274)
Q Consensus 79 v~~~-~~~~v~~ 89 (274)
+... .++..++
T Consensus 104 ~G~~~~~~~~~~ 115 (174)
T d1f8fa2 104 TGSPEILKQGVD 115 (174)
T ss_dssp SCCHHHHHHHHH
T ss_pred CCcHHHHHHHHh
Confidence 8644 3444443
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=96.62 E-value=0.0032 Score=43.71 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=30.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
.+||.|||.|.+|.-+|..|.+.|. +|+++ .|.
T Consensus 22 p~~v~IiGgG~iG~E~A~~l~~~g~----~Vtlv-~~~ 54 (117)
T d1onfa2 22 SKKIGIVGSGYIAVELINVIKRLGI----DSYIF-ARG 54 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTC----EEEEE-CSS
T ss_pred CCEEEEECCchHHHHHHHHHHhccc----cceee-ehh
Confidence 4689999999999999999999998 99999 774
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.57 E-value=0.0049 Score=48.97 Aligned_cols=83 Identities=10% Similarity=0.222 Sum_probs=55.5
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccHHH
Q 024016 12 ILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVKD 86 (274)
Q Consensus 12 ~IgiI--G~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~~~ 86 (274)
|+.+| |.+.+|.++|+.|.+.|+ +|+++ +|++++.+++.+. ..+.-.+.+++.+.+ .++.++.
T Consensus 11 Kv~lITGas~GIG~aiA~~la~~G~----~Vv~~-~r~~~~l~~~~~~-------l~~~~~~~~~~~~~~Dls~~~~v~~ 78 (257)
T d1xg5a_ 11 RLALVTGASGGIGAAVARALVQQGL----KVVGC-ARTVGNIEELAAE-------CKSAGYPGTLIPYRCDLSNEEDILS 78 (257)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHHTTCSSEEEEEECCTTCHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-------HHhcCCCceEEEEEccCCCHHHHHH
Confidence 45555 568999999999999999 99999 9999888776541 001001223444433 4567888
Q ss_pred HHHHhccccCCCCEEEEecC
Q 024016 87 VAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~~ 106 (274)
+++.+...+.+=.++|+..+
T Consensus 79 ~v~~~~~~~g~iD~lVnnAg 98 (257)
T d1xg5a_ 79 MFSAIRSQHSGVDICINNAG 98 (257)
T ss_dssp HHHHHHHHHCCCSEEEECCC
T ss_pred HHHHHHHhcCCCCEEEeccc
Confidence 88877665544357787643
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=96.51 E-value=0.0063 Score=48.19 Aligned_cols=82 Identities=21% Similarity=0.176 Sum_probs=56.1
Q ss_pred CeEEEE--cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccHH
Q 024016 11 FILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVK 85 (274)
Q Consensus 11 ~~IgiI--G~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~~ 85 (274)
+||++| |.+.+|.++++.|.+.|+ +|.+. +|++++++++.+. ..+ ...+++.+.+ .+++++
T Consensus 1 KKValITGas~GIG~aia~~la~~Ga----~V~~~-~r~~~~l~~~~~~-------i~~--~g~~~~~~~~Dv~~~~~v~ 66 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDGF----AVAIA-DYNDATAKAVASE-------INQ--AGGHAVAVKVDVSDRDQVF 66 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHH--TTCCEEEEECCTTSHHHHH
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-------HHh--cCCcEEEEEeeCCCHHHHH
Confidence 478777 557799999999999999 99999 9999888766531 001 1123344433 456688
Q ss_pred HHHHHhccccCCCCEEEEecC
Q 024016 86 DVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~~ 106 (274)
++++++...+.+=.++|+..+
T Consensus 67 ~~~~~~~~~~g~iDilVnnAG 87 (255)
T d1gega_ 67 AAVEQARKTLGGFDVIVNNAG 87 (255)
T ss_dssp HHHHHHHHHTTCCCEEEECCC
T ss_pred HHHHHHHHHhCCccEEEeccc
Confidence 888887665544457786543
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=96.48 E-value=0.0014 Score=51.38 Aligned_cols=34 Identities=18% Similarity=0.184 Sum_probs=31.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
..+||.|||+|.+|.+.|..|.++|+ +|+++ +|+
T Consensus 5 ~~~kVvVIGaGiaGl~~A~~L~~~G~----~V~vi-er~ 38 (268)
T d1c0pa1 5 SQKRVVVLGSGVIGLSSALILARKGY----SVHIL-ARD 38 (268)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESS
T ss_pred CCCcEEEECccHHHHHHHHHHHHCCC----CEEEE-eCC
Confidence 45799999999999999999999999 99999 875
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.39 E-value=0.0046 Score=43.17 Aligned_cols=33 Identities=21% Similarity=0.229 Sum_probs=30.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
++|.|||.|.+|.-+|..|.+.|+ +|+++ .|++
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~g~----~Vtlv-~~~~ 65 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEAGY----HVKLI-HRGA 65 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTC----EEEEE-CSSS
T ss_pred CcEEEECCcHHHHHHHHHhhcccc----eEEEE-eccc
Confidence 589999999999999999999998 99999 7764
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.38 E-value=0.005 Score=48.79 Aligned_cols=85 Identities=15% Similarity=0.213 Sum_probs=55.3
Q ss_pred eEEEE-c-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccHHH
Q 024016 12 ILGFI-G-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVKD 86 (274)
Q Consensus 12 ~IgiI-G-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~~~ 86 (274)
|+.+| | .+-+|.++++.|.+.|+ +|.+. +|++++.+++.+. ..+......+.++.+ .++.+++
T Consensus 4 KvalITGas~GIG~aia~~la~~Ga----~V~i~-~r~~~~~~~~~~~-------l~~~~~~~~~~~~~~Dv~~~~~v~~ 71 (254)
T d2gdza1 4 KVALVTGAAQGIGRAFAEALLLKGA----KVALV-DWNLEAGVQCKAA-------LHEQFEPQKTLFIQCDVADQQQLRD 71 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HTTTSCGGGEEEEECCTTSHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-------HHHhcCCCcEEEEEeecCCHHHHHH
Confidence 44455 5 47799999999999999 99999 9999887766541 001111223444443 4566788
Q ss_pred HHHHhccccCCCCEEEEecCCC
Q 024016 87 VAMQIRPLLSRKKLLVSVAAGV 108 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~~g~ 108 (274)
+++++...+.+=.++|+..+..
T Consensus 72 ~~~~~~~~~G~iDilVnnAg~~ 93 (254)
T d2gdza1 72 TFRKVVDHFGRLDILVNNAGVN 93 (254)
T ss_dssp HHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHcCCcCeeccccccc
Confidence 8877766554445778764433
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=96.34 E-value=0.0028 Score=52.46 Aligned_cols=69 Identities=16% Similarity=0.309 Sum_probs=49.9
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH--HHHHH-cCceec----cCc----hhhccCCCEEE
Q 024016 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR--DAFES-IGVKVL----SDN----NAVVEYSDVVV 76 (274)
Q Consensus 9 ~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~--~~l~~-~g~~~~----~~~----~~~~~~aDiIi 76 (274)
++++|.|+| +|.+|+++++.|++.|| +|++. .|++++. +.+.. .|+++. .+. ..+...+|.++
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~----~V~~l-~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~ 76 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGH----HVRAQ-VHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAF 76 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTC----CEEEE-ESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEE
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCC----eEEEE-ECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEE
Confidence 467999997 59999999999999999 99999 8876543 33333 465432 222 23566889998
Q ss_pred EeeCcc
Q 024016 77 FSVKPQ 82 (274)
Q Consensus 77 l~v~~~ 82 (274)
...++.
T Consensus 77 ~~~~~~ 82 (350)
T d1xgka_ 77 INTTSQ 82 (350)
T ss_dssp ECCCST
T ss_pred eecccc
Confidence 887643
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=96.31 E-value=0.0071 Score=48.00 Aligned_cols=83 Identities=11% Similarity=0.091 Sum_probs=55.3
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccHHH
Q 024016 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVKD 86 (274)
Q Consensus 11 ~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~~~ 86 (274)
+++-|.| .+-||.++++.|.+.|+ +|.+. +|++++.+++.+. ..+...+..++.+.+ .+++++.
T Consensus 5 K~alITGas~GIG~aia~~la~~Ga----~V~i~-~r~~~~l~~~~~~-------~~~~~~~~~~~~~~~Dvt~~~~v~~ 72 (258)
T d1iy8a_ 5 RVVLITGGGSGLGRATAVRLAAEGA----KLSLV-DVSSEGLEASKAA-------VLETAPDAEVLTTVADVSDEAQVEA 72 (258)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHHHCTTCCEEEEECCTTSHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-------HHhhCCCCeEEEEeccCCCHHHHHH
Confidence 3444445 46799999999999999 99999 9999887765531 111112334554444 4567888
Q ss_pred HHHHhccccCCCCEEEEec
Q 024016 87 VAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~ 105 (274)
+++++...+.+=.++|+..
T Consensus 73 ~~~~~~~~~G~iDiLVnnA 91 (258)
T d1iy8a_ 73 YVTATTERFGRIDGFFNNA 91 (258)
T ss_dssp HHHHHHHHHSCCSEEEECC
T ss_pred HHHHHHHHhCCCCEEEECC
Confidence 8887766554445778754
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=96.29 E-value=0.0016 Score=41.72 Aligned_cols=34 Identities=9% Similarity=0.222 Sum_probs=30.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK 49 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~ 49 (274)
++|||||.|-.|+.|+..-.+-|+ ++.++ +.+++
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~----~v~vl-dp~~~ 35 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGI----AVWPV-GLDAE 35 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTE----EEEEE-CTTSC
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCC----EEEEE-cCCCC
Confidence 589999999999999999999999 99999 87643
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=96.25 E-value=0.0089 Score=47.33 Aligned_cols=80 Identities=10% Similarity=0.077 Sum_probs=55.5
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccHHH
Q 024016 12 ILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVKD 86 (274)
Q Consensus 12 ~IgiI--G~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~~~ 86 (274)
||++| |.+-||.++++.|.++|+ +|.++ +|++++++++.+. ..+ ...++.++.. .++.++.
T Consensus 3 KValITGas~GIG~aia~~la~~Ga----~V~i~-~r~~~~l~~~~~~-------l~~--~g~~~~~~~~Dvs~~~~v~~ 68 (257)
T d2rhca1 3 EVALVTGATSGIGLEIARRLGKEGL----RVFVC-ARGEEGLRTTLKE-------LRE--AGVEADGRTCDVRSVPEIEA 68 (257)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHH--TTCCEEEEECCTTCHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-------HHh--cCCcEEEEEeecCCHHHHHH
Confidence 68777 667899999999999999 99999 9999888766541 000 1123333333 4567888
Q ss_pred HHHHhccccCCCCEEEEec
Q 024016 87 VAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~ 105 (274)
+++++...+.+=.++|+..
T Consensus 69 ~~~~~~~~~g~iDilVnnA 87 (257)
T d2rhca1 69 LVAAVVERYGPVDVLVNNA 87 (257)
T ss_dssp HHHHHHHHTCSCSEEEECC
T ss_pred HHHHHHHHhCCCCEEEecc
Confidence 8888776554445777654
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=96.23 E-value=0.0044 Score=44.00 Aligned_cols=88 Identities=19% Similarity=0.207 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHHHHHH-------Hh
Q 024016 183 PAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHEL-------EK 252 (274)
Q Consensus 183 ~~~~~~~~~~l~e~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~l~~l-------~~ 252 (274)
+.+++..+.++.|+ +.+.|++++++++++..+..++..+-. ....+.+..+.|+++...+.+.+ ++
T Consensus 13 N~l~~~~~~~~aEal~la~~~Gid~~~~~~~l~~~~~~S~~~~~----~~~~~~~~~~~~~f~~~l~~KDl~l~~~~a~~ 88 (133)
T d1vpda1 13 QVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDA----KAPMVMDRNFKPGFRIDLHIKDLANALDTSHG 88 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHH----HHHHHHTTCCCCSSBHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccccchhhhh----ccchhhhccCCCCchHHHHHHHHHHHHHHHHH
Confidence 34445555666665 569999999999999888766654432 22356666778998887765543 45
Q ss_pred CCHHHHHHHHHHHHHHHHhhcC
Q 024016 253 SGFRGILMNAVVAAAKRSRELS 274 (274)
Q Consensus 253 ~~~~~~~~~a~~~~~~r~~~~~ 274 (274)
.+++..+.+...+.|+++.+.|
T Consensus 89 ~~~~~p~~~~~~~~~~~a~~~G 110 (133)
T d1vpda1 89 VGAQLPLTAAVMEMMQALRADG 110 (133)
T ss_dssp HTCCCHHHHHHHHHHHHHHHTT
T ss_pred cCCCChHHHHHHHHHHHHHHcC
Confidence 5777888888888888877653
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.22 E-value=0.029 Score=41.23 Aligned_cols=72 Identities=15% Similarity=0.163 Sum_probs=51.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCc----h---hhc-----cCCCEEE
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDN----N---AVV-----EYSDVVV 76 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~----~---~~~-----~~aDiIi 76 (274)
...+|.|+|+|-+|...++.+...|. ..|++. ++++++.+..++.|+...-+. . +.. ..+|+||
T Consensus 28 ~G~tVlI~GaGGvG~~aiq~ak~~G~---~~vi~~-~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vi 103 (176)
T d2fzwa2 28 PGSVCAVFGLGGVGLAVIMGCKVAGA---SRIIGV-DINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSF 103 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTC---SEEEEE-CSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CCCEEEEecchhHHHHHHHHHHHHhc---CceEEE-cccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEee
Confidence 34689999999999999988888886 267777 999999988888886422111 1 111 3578998
Q ss_pred EeeCcccH
Q 024016 77 FSVKPQVV 84 (274)
Q Consensus 77 l~v~~~~~ 84 (274)
-++.....
T Consensus 104 d~~G~~~~ 111 (176)
T d2fzwa2 104 ECIGNVKV 111 (176)
T ss_dssp ECSCCHHH
T ss_pred ecCCCHHH
Confidence 88865443
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.20 E-value=0.013 Score=46.15 Aligned_cols=79 Identities=16% Similarity=0.186 Sum_probs=55.1
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccHH
Q 024016 10 SFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVK 85 (274)
Q Consensus 10 ~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~~ 85 (274)
.+++-|.| .+.||.++++.|.+.|+ +|.+. +|++++.+++.+..- +..++.+ .+++++
T Consensus 6 GK~alITGas~GIG~aia~~la~~Ga----~V~i~-~r~~~~~~~~~~~~~-------------~~~~~~~Dvs~~~~v~ 67 (250)
T d1ydea1 6 GKVVVVTGGGRGIGAGIVRAFVNSGA----RVVIC-DKDESGGRALEQELP-------------GAVFILCDVTQEDDVK 67 (250)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHCT-------------TEEEEECCTTSHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHhcC-------------CCeEEEccCCCHHHHH
Confidence 44555555 58999999999999999 99999 999998887765321 1222222 456788
Q ss_pred HHHHHhccccCCCCEEEEecC
Q 024016 86 DVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~~ 106 (274)
.+++++...+.+=.++|+..+
T Consensus 68 ~~~~~~~~~~g~iDilVnnAG 88 (250)
T d1ydea1 68 TLVSETIRRFGRLDCVVNNAG 88 (250)
T ss_dssp HHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHhcCCCCEEEeccc
Confidence 888877665544457776643
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=96.20 E-value=0.0099 Score=47.13 Aligned_cols=84 Identities=17% Similarity=0.126 Sum_probs=56.9
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---Cccc
Q 024016 8 AESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQV 83 (274)
Q Consensus 8 ~~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~ 83 (274)
.+.+++-|.| .+.||.++++.|++.|+ +|.+. +|++++++++.+. ..+ ...++.++.+ .++.
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G~----~V~i~-~r~~~~l~~~~~~-------~~~--~~~~~~~~~~D~s~~~~ 69 (258)
T d1ae1a_ 4 LKGTTALVTGGSKGIGYAIVEELAGLGA----RVYTC-SRNEKELDECLEI-------WRE--KGLNVEGSVCDLLSRTE 69 (258)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHH--TTCCEEEEECCTTCHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-------HHh--cCCCceEEEeecCCHHH
Confidence 4566777776 58899999999999999 99999 9999887766541 000 1112223332 4566
Q ss_pred HHHHHHHhcccc-CCCCEEEEec
Q 024016 84 VKDVAMQIRPLL-SRKKLLVSVA 105 (274)
Q Consensus 84 ~~~v~~~i~~~l-~~~~~vis~~ 105 (274)
++++++++...+ .+..++|+..
T Consensus 70 ~~~~~~~~~~~~~g~idilinna 92 (258)
T d1ae1a_ 70 RDKLMQTVAHVFDGKLNILVNNA 92 (258)
T ss_dssp HHHHHHHHHHHTTSCCCEEEECC
T ss_pred HHHHHHHHHHHhCCCcEEEeccc
Confidence 778887777655 3455777654
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.17 E-value=0.0085 Score=44.30 Aligned_cols=69 Identities=13% Similarity=0.155 Sum_probs=48.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce-eccCchh----hc-----cCCCEEEEee
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK-VLSDNNA----VV-----EYSDVVVFSV 79 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~-~~~~~~~----~~-----~~aDiIil~v 79 (274)
..+|.|+|+|.+|...+.-+...|. ..|++. ++++++.+.+.+.|.. +.+...+ .. ...|+||-|+
T Consensus 33 g~~vli~GaG~vG~~~~~~a~~~g~---~~vv~~-~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~ 108 (172)
T d1h2ba2 33 GAYVAIVGVGGLGHIAVQLLKVMTP---ATVIAL-DVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFV 108 (172)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHCC---CEEEEE-ESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESS
T ss_pred CCEEEEeCCChHHHHHHHHHHhhcC---cccccc-cchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEec
Confidence 3589999999999988888777775 267788 9999999888887753 2211111 11 2467888887
Q ss_pred Ccc
Q 024016 80 KPQ 82 (274)
Q Consensus 80 ~~~ 82 (274)
...
T Consensus 109 g~~ 111 (172)
T d1h2ba2 109 GSQ 111 (172)
T ss_dssp CCH
T ss_pred Ccc
Confidence 644
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.17 E-value=0.0083 Score=44.38 Aligned_cols=73 Identities=16% Similarity=0.271 Sum_probs=55.4
Q ss_pred CCCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC-cccH
Q 024016 7 PAESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK-PQVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~G~-mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~-~~~~ 84 (274)
+.+.++|.|||-+. +|.+++.-|.+.|. .|+++ ++... +..+.++++|+|+.++. +..+
T Consensus 36 ~l~Gk~vvVIGrS~iVGrPLa~lL~~~ga----tVt~~-~~~t~--------------~l~~~~~~aDivi~a~G~~~~i 96 (170)
T d1a4ia1 36 PIAGRHAVVVGRSKIVGAPMHDLLLWNNA----TVTTC-HSKTA--------------HLDEEVNKGDILVVATGQPEMV 96 (170)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTC----EEEEE-CTTCS--------------SHHHHHTTCSEEEECCCCTTCB
T ss_pred ccccceEEEEecCCccchHHHHHHHhccC----ceEEE-ecccc--------------cHHHHHhhccchhhcccccccc
Confidence 34568999999966 99999999999998 89999 65422 33456779999999995 4433
Q ss_pred HHHHHHhccccCCCCEEEEe
Q 024016 85 KDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~ 104 (274)
. ...+++|.++|+.
T Consensus 97 ~------~~~vk~g~iviDv 110 (170)
T d1a4ia1 97 K------GEWIKPGAIVIDC 110 (170)
T ss_dssp C------GGGSCTTCEEEEC
T ss_pred c------cccccCCCeEecc
Confidence 2 2357899999986
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=96.11 E-value=0.011 Score=46.54 Aligned_cols=80 Identities=19% Similarity=0.149 Sum_probs=54.2
Q ss_pred eEEEE-c-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccHHH
Q 024016 12 ILGFI-G-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVKD 86 (274)
Q Consensus 12 ~IgiI-G-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~~~ 86 (274)
||++| | .+.+|.++++.|.+.|+ +|.++ +|++++++++.+. ..+ ...++..+.+ .+++++.
T Consensus 11 KvalITGas~GIG~a~a~~la~~Ga----~V~~~-~r~~~~l~~~~~~-------l~~--~g~~~~~~~~Dvt~~~~v~~ 76 (251)
T d2c07a1 11 KVALVTGAGRGIGREIAKMLAKSVS----HVICI-SRTQKSCDSVVDE-------IKS--FGYESSGYAGDVSKKEEISE 76 (251)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTTSS----EEEEE-ESSHHHHHHHHHH-------HHT--TTCCEEEEECCTTCHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC----EEEEE-ECCHHHHHHHHHH-------HHh--cCCcEEEEEccCCCHHHHHH
Confidence 56666 4 47899999999999999 99999 9999888766541 000 1123334433 4567888
Q ss_pred HHHHhccccCCCCEEEEec
Q 024016 87 VAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~ 105 (274)
+++++...+.+=.++|+..
T Consensus 77 ~~~~~~~~~g~iDilvnna 95 (251)
T d2c07a1 77 VINKILTEHKNVDILVNNA 95 (251)
T ss_dssp HHHHHHHHCSCCCEEEECC
T ss_pred HHHHHHHhcCCceeeeecc
Confidence 8888766554445777643
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.10 E-value=0.004 Score=46.04 Aligned_cols=47 Identities=15% Similarity=0.112 Sum_probs=39.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~ 60 (274)
..+|.|+|+ |.+|...+..+...|. ..|+++ ++++++.+.+++.|++
T Consensus 28 g~~vlV~G~~G~vG~~~~~~~~~~g~---~~V~~~-~~~~~~~~~~~~~Ga~ 75 (170)
T d1jvba2 28 TKTLLVVGAGGGLGTMAVQIAKAVSG---ATIIGV-DVREEAVEAAKRAGAD 75 (170)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTC---CEEEEE-ESSHHHHHHHHHHTCS
T ss_pred CCEEEEEeccccceeeeeeccccccc---cccccc-ccchhhHHHHHHcCCc
Confidence 358999995 9999998888888885 278889 9999999988888763
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=96.08 E-value=0.018 Score=45.37 Aligned_cols=78 Identities=13% Similarity=0.146 Sum_probs=54.5
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEee---CcccHH
Q 024016 12 ILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSV---KPQVVK 85 (274)
Q Consensus 12 ~IgiI--G~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v---~~~~~~ 85 (274)
|+.+| |.+-||.++++.|.+.|+ +|.+. +|++++.+++.+ .+ ...++.++.. .+++++
T Consensus 7 K~alVTGas~GIG~aia~~la~~Ga----~V~~~-~r~~~~~~~~~~~~~-----------~~~~~~~~~~Dv~~~~~v~ 70 (251)
T d1zk4a1 7 KVAIITGGTLGIGLAIATKFVEEGA----KVMIT-GRHSDVGEKAAKSVG-----------TPDQIQFFQHDSSDEDGWT 70 (251)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHHC-----------CTTTEEEEECCTTCHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHHhC-----------CCCcEEEEEccCCCHHHHH
Confidence 45555 568899999999999999 99999 999988877664 11 1123444443 356688
Q ss_pred HHHHHhccccCCCCEEEEec
Q 024016 86 DVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~ 105 (274)
++++++...+.+=.++|+..
T Consensus 71 ~~~~~~~~~~G~iDiLVnnA 90 (251)
T d1zk4a1 71 KLFDATEKAFGPVSTLVNNA 90 (251)
T ss_dssp HHHHHHHHHHSSCCEEEECC
T ss_pred HHHHHHHHHhCCceEEEecc
Confidence 88887766554445777654
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=96.07 E-value=0.0032 Score=50.98 Aligned_cols=39 Identities=18% Similarity=0.165 Sum_probs=33.9
Q ss_pred CCCCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 5 PIPAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 5 ~~~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
+...+.+||.|||+|.-|.+-|..|.++|+ +|+++ ++++
T Consensus 25 ~~~~~pkkV~IIGaG~aGLsaA~~L~~~G~----~V~vl-E~~~ 63 (370)
T d2iida1 25 KATSNPKHVVIVGAGMAGLSAAYVLAGAGH----QVTVL-EASE 63 (370)
T ss_dssp CCCSSCCEEEEECCBHHHHHHHHHHHHHTC----EEEEE-CSSS
T ss_pred CCCCCCCeEEEECCCHHHHHHHHHHHHCCC----CEEEE-eCCC
Confidence 444466799999999999999999999999 99999 7654
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.04 E-value=0.0021 Score=50.16 Aligned_cols=69 Identities=16% Similarity=0.202 Sum_probs=46.7
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce--e-----ccCchhhccCCCEEEEee
Q 024016 8 AESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK--V-----LSDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 8 ~~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~--~-----~~~~~~~~~~aDiIil~v 79 (274)
|+++||-|.| +|.+|+.+++.|++.|+.. +|++. +|++.+...-....+. . ..+..++.+++|++|.|+
T Consensus 12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~--~v~~~-~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~ 88 (232)
T d2bkaa1 12 MQNKSVFILGASGETGRVLLKEILEQGLFS--KVTLI-GRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCL 88 (232)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCS--EEEEE-ESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCCC--EEEEE-ecChhhhcccccceeeeeeecccccccccccccccccccccc
Confidence 4567899995 5999999999999998522 78888 8876443211111111 1 123455677899999886
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=96.01 E-value=0.044 Score=40.19 Aligned_cols=71 Identities=17% Similarity=0.181 Sum_probs=51.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-ccCc------hhhc-----cCCCEEE
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-LSDN------NAVV-----EYSDVVV 76 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~-~~~~------~~~~-----~~aDiIi 76 (274)
...+|.|+|+|.+|...+..+...|- ..|++. ++++++.+.+.+.|+.- .+.. .+.. ...|++|
T Consensus 28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~---~~Vi~~-~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~d~vi 103 (175)
T d1cdoa2 28 PGSTCAVFGLGAVGLAAVMGCHSAGA---KRIIAV-DLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSL 103 (175)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-CSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEE
T ss_pred CCCEEEEEecCCccchHHHHHHHHhh---chheee-cchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCCcceee
Confidence 34689999999999999888887765 368888 99999999888888742 2111 1111 2478888
Q ss_pred EeeCccc
Q 024016 77 FSVKPQV 83 (274)
Q Consensus 77 l~v~~~~ 83 (274)
-++-...
T Consensus 104 d~~G~~~ 110 (175)
T d1cdoa2 104 ECVGNVG 110 (175)
T ss_dssp ECSCCHH
T ss_pred eecCCHH
Confidence 8886443
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=95.99 E-value=0.051 Score=39.94 Aligned_cols=79 Identities=14% Similarity=0.120 Sum_probs=55.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec---cCchhhc---------cCCCEE
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL---SDNNAVV---------EYSDVV 75 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~---~~~~~~~---------~~aDiI 75 (274)
....+|.|+|+|-+|...+..+...|. ..|++. ++++++.+...+.|.... .+..+.. ...|++
T Consensus 27 k~GdtVlV~GaGG~G~~~~~~~~~~g~---~~Vi~~-~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~v 102 (176)
T d2jhfa2 27 TQGSTCAVFGLGGVGLSVIMGCKAAGA---ARIIGV-DINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFS 102 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-CSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHcCC---ceEEee-cCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEE
Confidence 344689999999999999999988875 278888 999999988888776421 1111111 257999
Q ss_pred EEeeCccc-HHHHHHH
Q 024016 76 VFSVKPQV-VKDVAMQ 90 (274)
Q Consensus 76 il~v~~~~-~~~v~~~ 90 (274)
|-++.... .+..+..
T Consensus 103 id~~G~~~~~~~a~~~ 118 (176)
T d2jhfa2 103 FEVIGRLDTMVTALSC 118 (176)
T ss_dssp EECSCCHHHHHHHHHH
T ss_pred EecCCchhHHHHHHHH
Confidence 99986443 4444443
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=95.99 E-value=0.013 Score=45.86 Aligned_cols=81 Identities=19% Similarity=0.154 Sum_probs=54.7
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCcccHHH
Q 024016 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (274)
Q Consensus 9 ~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~~~~~ 86 (274)
+.+++-|.| .+.+|.++++.|.+.|+ +|.+. +|++++.+++.+ .++.. -.+|+ ..++++++
T Consensus 4 ~gK~~lITGas~GIG~aia~~l~~~G~----~V~~~-~r~~~~l~~~~~~~~~~~--------~~~Dv----~~~~~v~~ 66 (242)
T d1ulsa_ 4 KDKAVLITGAAHGIGRATLELFAKEGA----RLVAC-DIEEGPLREAAEAVGAHP--------VVMDV----ADPASVER 66 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHTTTCEE--------EECCT----TCHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHHcCCeE--------EEEec----CCHHHHHH
Confidence 344555555 47799999999999999 99999 999998887765 23221 01232 24667888
Q ss_pred HHHHhccccCCCCEEEEecC
Q 024016 87 VAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~~ 106 (274)
+++++...+.+=.++|+..+
T Consensus 67 ~~~~~~~~~g~iDilVnnAG 86 (242)
T d1ulsa_ 67 GFAEALAHLGRLDGVVHYAG 86 (242)
T ss_dssp HHHHHHHHHSSCCEEEECCC
T ss_pred HHHHHHHhcCCceEEEECCc
Confidence 88777655544357776543
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.97 E-value=0.021 Score=46.11 Aligned_cols=89 Identities=13% Similarity=0.197 Sum_probs=58.8
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccH
Q 024016 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~ 84 (274)
+.+++-|.| .+-+|.++++.|.+.|+ +|.+. +|++++.+...+. + .....+ ....+++.+.+ .++++
T Consensus 11 ~gKvalITGas~GIG~aia~~la~~Ga----~Vvi~-~r~~~~l~~~~~e-l--~~~~~~-~~~~~~~~~~~Dvs~~~~v 81 (297)
T d1yxma1 11 QGQVAIVTGGATGIGKAIVKELLELGS----NVVIA-SRKLERLKSAADE-L--QANLPP-TKQARVIPIQCNIRNEEEV 81 (297)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-H--HHTSCT-TCCCCEEEEECCTTCHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-H--Hhhhcc-ccCceEEEEeccCCCHHHH
Confidence 444454444 57799999999999999 99999 9999887765531 0 001101 12456666665 35678
Q ss_pred HHHHHHhccccCCCCEEEEecC
Q 024016 85 KDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~~ 106 (274)
+++++++...+.+=.++|+..+
T Consensus 82 ~~~~~~~~~~~G~iDiLVnnAg 103 (297)
T d1yxma1 82 NNLVKSTLDTFGKINFLVNNGG 103 (297)
T ss_dssp HHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHhCCeEEEEeecc
Confidence 8888877665555567886543
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.96 E-value=0.0092 Score=46.94 Aligned_cols=83 Identities=17% Similarity=0.120 Sum_probs=56.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccHH
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVK 85 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~~ 85 (274)
.+.+-|-|+ +-||..+++.|.++|+ +|.++ +|++++++++++. + .+ ...++.++.+ .++.++
T Consensus 7 Gkv~lITGas~GIG~~ia~~la~~G~----~V~l~-~r~~~~l~~~~~~-~------~~--~~~~~~~~~~Dvs~~~~v~ 72 (244)
T d1yb1a_ 7 GEIVLITGAGHGIGRLTAYEFAKLKS----KLVLW-DINKHGLEETAAK-C------KG--LGAKVHTFVVDCSNREDIY 72 (244)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-H------HH--TTCCEEEEECCTTCHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-H------Hh--cCCcEEEEEeeCCCHHHHH
Confidence 334444455 5699999999999999 99999 9999998877641 1 11 1234444444 345677
Q ss_pred HHHHHhccccCCCCEEEEecC
Q 024016 86 DVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~~ 106 (274)
.+++++...+.+=.++|+..+
T Consensus 73 ~~~~~i~~~~g~idilinnag 93 (244)
T d1yb1a_ 73 SSAKKVKAEIGDVSILVNNAG 93 (244)
T ss_dssp HHHHHHHHHTCCCSEEEECCC
T ss_pred HHHHHHHHHcCCCceeEeecc
Confidence 788877665655567776543
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.95 E-value=0.0079 Score=47.66 Aligned_cols=80 Identities=21% Similarity=0.254 Sum_probs=54.0
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCcccHHHHH
Q 024016 12 ILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 12 ~IgiI--G~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~ 88 (274)
|+.+| |.+-+|.++++.|.+.|+ +|.+. +|++++++++.+ .|..+. .-.+|+ +.++++++++
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga----~V~~~-~r~~~~l~~~~~~~~~~~~------~~~~Dv----t~~~~v~~~~ 70 (256)
T d1k2wa_ 6 KTALITGSARGIGRAFAEAYVREGA----RVAIA-DINLEAARATAAEIGPAAC------AIALDV----TDQASIDRCV 70 (256)
T ss_dssp EEEEEETCSSHHHHHHHHHHHHTTE----EEEEE-ESCHHHHHHHHHHHCTTEE------EEECCT----TCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHHhCCceE------EEEeeC----CCHHHHHHHH
Confidence 45555 558999999999999999 99999 999988877665 332110 011222 2466788888
Q ss_pred HHhccccCCCCEEEEecC
Q 024016 89 MQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 89 ~~i~~~l~~~~~vis~~~ 106 (274)
+++...+.+=.++|+..+
T Consensus 71 ~~~~~~~g~iDilVnnAg 88 (256)
T d1k2wa_ 71 AELLDRWGSIDILVNNAA 88 (256)
T ss_dssp HHHHHHHSCCCEEEECCC
T ss_pred HHHHHHhCCccEEEeecc
Confidence 877655544457776543
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=95.94 E-value=0.008 Score=47.71 Aligned_cols=84 Identities=14% Similarity=0.109 Sum_probs=54.6
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~ 84 (274)
+.+++-|.|. +-||.++++.|.+.|+ +|.++ +|++++++++.+. + .+ ....+.++.+ .++.+
T Consensus 7 ~GK~alITGas~GIG~aia~~la~~Ga----~V~~~-~r~~~~l~~~~~~-~------~~--~g~~~~~~~~Dv~~~~~v 72 (259)
T d2ae2a_ 7 EGCTALVTGGSRGIGYGIVEELASLGA----SVYTC-SRNQKELNDCLTQ-W------RS--KGFKVEASVCDLSSRSER 72 (259)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-H------HH--TTCEEEEEECCTTCHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-H------Hh--cCCCceEEEeeCCCHHHH
Confidence 4445555555 6799999999999999 99999 9999888766541 0 00 0112222222 45668
Q ss_pred HHHHHHhccccC-CCCEEEEecC
Q 024016 85 KDVAMQIRPLLS-RKKLLVSVAA 106 (274)
Q Consensus 85 ~~v~~~i~~~l~-~~~~vis~~~ 106 (274)
+++++++...+. +=.++|+..+
T Consensus 73 ~~~~~~~~~~~~~~idilvnnAG 95 (259)
T d2ae2a_ 73 QELMNTVANHFHGKLNILVNNAG 95 (259)
T ss_dssp HHHHHHHHHHTTTCCCEEEECCC
T ss_pred HHHHHHHHHHhCCCceEEEECCc
Confidence 888877766554 3357776543
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=95.94 E-value=0.0033 Score=44.67 Aligned_cols=88 Identities=13% Similarity=0.061 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHhcCCCCchHHHHHHHH-------Hh
Q 024016 183 PAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHEL-------EK 252 (274)
Q Consensus 183 ~~~~~~~~~~l~e~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~l~~l-------~~ 252 (274)
+.+++..+.++.|+ +++.|+|++++++++..+..++..+.. ..|..+.+..+.|+++.....+.+ ++
T Consensus 12 N~l~~~~~~~~aEal~la~~~Gld~~~~~~vl~~s~~~s~~~~~---~~p~~~~~~~~~~~f~~~~~~KDl~l~~~~a~~ 88 (132)
T d2cvza1 12 NALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATEN---LIPQRVLTRAFPKTFALGLLVKDLGIAMGVLDG 88 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCBHHHHH---THHHHTTTSCCCCSSBHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhhhhhhhhhh---hhhHHHHHHhhhhhhHHHHHhhHHHHHHHHHHH
Confidence 33444455566665 579999999999999877666544322 345567777788988877765543 44
Q ss_pred CCHHHHHHHHHHHHHHHHhhc
Q 024016 253 SGFRGILMNAVVAAAKRSREL 273 (274)
Q Consensus 253 ~~~~~~~~~a~~~~~~r~~~~ 273 (274)
.+.+..+.++..+.|+++.+.
T Consensus 89 ~g~~~pl~~~~~~~~~~a~~~ 109 (132)
T d2cvza1 89 EKAPSPLLRLAREVYEMAKRE 109 (132)
T ss_dssp TCCCCHHHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHc
Confidence 577888888888888888764
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=95.93 E-value=0.011 Score=46.90 Aligned_cols=80 Identities=14% Similarity=0.178 Sum_probs=56.1
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----cCceeccCchhhccCCCEEEEee---Ccc
Q 024016 12 ILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IGVKVLSDNNAVVEYSDVVVFSV---KPQ 82 (274)
Q Consensus 12 ~IgiI--G~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~----~g~~~~~~~~~~~~~aDiIil~v---~~~ 82 (274)
|+++| |.+.+|.++++.|.+.|+ +|.+. +|++++++++.+ .+. ...++.++.. .++
T Consensus 6 KvalVTGas~GIG~aia~~la~~Ga----~V~~~-~r~~~~l~~~~~~l~~~~~----------~~~~~~~~~~Dvt~~~ 70 (264)
T d1spxa_ 6 KVAIITGSSNGIGRATAVLFAREGA----KVTIT-GRHAERLEETRQQILAAGV----------SEQNVNSVVADVTTDA 70 (264)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHHHHTTC----------CGGGEEEEECCTTSHH
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHHHHhcCC----------CcCceEEEEccCCCHH
Confidence 57777 668999999999999999 99999 999988876654 111 1123444443 456
Q ss_pred cHHHHHHHhccccCCCCEEEEecC
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
.++++++++...+.+=.++|+..+
T Consensus 71 ~v~~~~~~~~~~~g~iDilvnnAG 94 (264)
T d1spxa_ 71 GQDEILSTTLGKFGKLDILVNNAG 94 (264)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHhCCCCEeecccc
Confidence 678888777665544457787643
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=95.91 E-value=0.012 Score=46.23 Aligned_cols=79 Identities=19% Similarity=0.318 Sum_probs=53.3
Q ss_pred eEEEE-c-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCcccHHHHH
Q 024016 12 ILGFI-G-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 12 ~IgiI-G-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~ 88 (274)
|+.+| | .+.||.++++.|.+.|+ +|.++ +|++++++++.+ .+.... .-.+|+ ..++++++++
T Consensus 5 K~alITGas~GIG~a~a~~l~~~G~----~Vv~~-~r~~~~l~~~~~~~~~~~~------~~~~Dv----~~~~~v~~~~ 69 (243)
T d1q7ba_ 5 KIALVTGASRGIGRAIAETLAARGA----KVIGT-ATSENGAQAISDYLGANGK------GLMLNV----TDPASIESVL 69 (243)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHHHHGGGEE------EEECCT----TCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHHHHhCCCCc------EEEEEe----cCHHHhhhhh
Confidence 45555 4 57899999999999999 99999 999998887765 221110 001221 2456788888
Q ss_pred HHhccccCCCCEEEEec
Q 024016 89 MQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 89 ~~i~~~l~~~~~vis~~ 105 (274)
+++...+.+=.++|+..
T Consensus 70 ~~~~~~~g~iDilVnnA 86 (243)
T d1q7ba_ 70 EKIRAEFGEVDILVNNA 86 (243)
T ss_dssp HHHHHHTCSCSEEEECC
T ss_pred hhhhcccCCcceehhhh
Confidence 88766554445777653
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=95.91 E-value=0.0033 Score=49.98 Aligned_cols=32 Identities=16% Similarity=0.268 Sum_probs=30.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
|+|.|||+|.-|.+.|..|.++|+ +|+++ .++
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~G~----~V~vl-E~~ 32 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSRGT----DAVLL-ESS 32 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTTTC----CEEEE-CSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC----CEEEE-ecC
Confidence 689999999999999999999999 99999 765
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.89 E-value=0.0059 Score=48.88 Aligned_cols=86 Identities=12% Similarity=0.087 Sum_probs=55.1
Q ss_pred CCeEEEE-cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccHH
Q 024016 10 SFILGFI-GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVK 85 (274)
Q Consensus 10 ~~~IgiI-G~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~~ 85 (274)
.+++-|. |.+.||.++++.|.+.|+ +|.+. +|++++++++.+. +. .. -....++..+.. .++.++
T Consensus 5 gK~alVTGas~GIG~aia~~la~~Ga----~V~l~-~r~~~~l~~~~~~-l~--~~---~~~~~~~~~~~~Dvs~~~~v~ 73 (272)
T d1xkqa_ 5 NKTVIITGSSNGIGRTTAILFAQEGA----NVTIT-GRSSERLEETRQI-IL--KS---GVSEKQVNSVVADVTTEDGQD 73 (272)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-HH--TT---TCCGGGEEEEECCTTSHHHHH
T ss_pred CCEEEEeCcCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-HH--hc---CCCCCceEEEEccCCCHHHHH
Confidence 3344444 558899999999999999 99999 9999888776541 00 00 001123444443 456788
Q ss_pred HHHHHhccccCCCCEEEEecC
Q 024016 86 DVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~~ 106 (274)
.+++++...+.+=.++|+..+
T Consensus 74 ~~~~~~~~~~g~iDilvnnAG 94 (272)
T d1xkqa_ 74 QIINSTLKQFGKIDVLVNNAG 94 (272)
T ss_dssp HHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHhCCceEEEeCCc
Confidence 888877665544457776643
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=95.89 E-value=0.024 Score=45.48 Aligned_cols=82 Identities=13% Similarity=0.232 Sum_probs=51.9
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccHHH
Q 024016 12 ILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVKD 86 (274)
Q Consensus 12 ~IgiI--G~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~~~ 86 (274)
|+.+| |.|.+|.++|+.|.+.|+ +|++. +|+.++.+++.+. ..+ ....++.++.+ .++.++.
T Consensus 26 K~alITGas~GIG~aiA~~la~~Ga----~Vii~-~r~~~~l~~~~~~-------l~~-~~g~~~~~~~~D~~~~~~v~~ 92 (294)
T d1w6ua_ 26 KVAFITGGGTGLGKGMTTLLSSLGA----QCVIA-SRKMDVLKATAEQ-------ISS-QTGNKVHAIQCDVRDPDMVQN 92 (294)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHH-HHSSCEEEEECCTTCHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC----EEEEE-ECCHHHHHHHHHH-------HHH-hcCCceEEEEecccChHHHHH
Confidence 66666 679999999999999999 99999 9999877655431 000 01123333333 2445666
Q ss_pred HHHHhccccCCCCEEEEecC
Q 024016 87 VAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~~ 106 (274)
++..+......=.++|+..+
T Consensus 93 ~~~~~~~~~g~iDilvnnAg 112 (294)
T d1w6ua_ 93 TVSELIKVAGHPNIVINNAA 112 (294)
T ss_dssp HHHHHHHHTCSCSEEEECCC
T ss_pred Hhhhhhhhccccchhhhhhh
Confidence 66665544433346776543
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=95.88 E-value=0.016 Score=45.28 Aligned_cols=78 Identities=12% Similarity=0.145 Sum_probs=55.0
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEee---CcccH
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v---~~~~~ 84 (274)
.+++-|.|. +.+|.++|+.|.++|+ +|++. +|+.++.+++.+ .+ .+++++.. .++.+
T Consensus 5 gK~alItGas~GIG~aia~~l~~~G~----~V~~~-~r~~~~~~~~~~~~~-------------~~~~~~~~Dls~~~~i 66 (241)
T d2a4ka1 5 GKTILVTGAASGIGRAALDLFAREGA----SLVAV-DREERLLAEAVAALE-------------AEAIAVVADVSDPKAV 66 (241)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHTCC-------------SSEEEEECCTTSHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHHcC-------------CceEEEEecCCCHHHH
Confidence 345555555 6699999999999999 99999 999988776654 22 13333332 45678
Q ss_pred HHHHHHhccccCCCCEEEEec
Q 024016 85 KDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~ 105 (274)
+++++++...+.+=.++|...
T Consensus 67 ~~~~~~i~~~~g~iDiLinnA 87 (241)
T d2a4ka1 67 EAVFAEALEEFGRLHGVAHFA 87 (241)
T ss_dssp HHHHHHHHHHHSCCCEEEEGG
T ss_pred HHHHHHHHHHhCCccEecccc
Confidence 888888776655556777654
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.88 E-value=0.012 Score=44.49 Aligned_cols=68 Identities=18% Similarity=0.137 Sum_probs=48.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCc---------hhhc--cCCCEEEE
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDN---------NAVV--EYSDVVVF 77 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~---------~~~~--~~aDiIil 77 (274)
...+|.|+|+|.+|...+......|. ..|++. ++++++.+.+.+.|+....+. .+.. ..+|++|-
T Consensus 25 ~G~tVlV~GaG~vGl~a~~~ak~~ga---~~Vi~~-d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid 100 (195)
T d1kola2 25 PGSTVYVAGAGPVGLAAAASARLLGA---AVVIVG-DLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVD 100 (195)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-ESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHhhcc---cceeee-cccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEE
Confidence 34689999999999877776666664 378888 999999998888887643221 1111 24799998
Q ss_pred eeC
Q 024016 78 SVK 80 (274)
Q Consensus 78 ~v~ 80 (274)
|+-
T Consensus 101 ~vG 103 (195)
T d1kola2 101 AVG 103 (195)
T ss_dssp CCC
T ss_pred Ccc
Confidence 874
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.87 E-value=0.012 Score=46.18 Aligned_cols=77 Identities=13% Similarity=0.171 Sum_probs=53.7
Q ss_pred eEEEE-cc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEee---CcccHH
Q 024016 12 ILGFI-GA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSV---KPQVVK 85 (274)
Q Consensus 12 ~IgiI-G~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v---~~~~~~ 85 (274)
|+.+| |. +-+|.++++.|.+.|+ +|.+. +|++++.+.+.+ .+- ...++.+ .+++++
T Consensus 7 K~alITGas~GIG~aia~~la~~G~----~V~~~-~r~~~~~~~~~~~~~~-------------~~~~~~~Dv~~~~~v~ 68 (244)
T d1nffa_ 7 KVALVSGGARGMGASHVRAMVAEGA----KVVFG-DILDEEGKAMAAELAD-------------AARYVHLDVTQPAQWK 68 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHTGG-------------GEEEEECCTTCHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHHhhC-------------cceEEEeecCCHHHHH
Confidence 44455 54 7799999999999999 99999 999998887765 221 1222222 456788
Q ss_pred HHHHHhccccCCCCEEEEecC
Q 024016 86 DVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~~ 106 (274)
++++++...+.+=.++|+..+
T Consensus 69 ~~~~~~~~~~g~idilinnAG 89 (244)
T d1nffa_ 69 AAVDTAVTAFGGLHVLVNNAG 89 (244)
T ss_dssp HHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHhCCCeEEEECCc
Confidence 888887765544457776643
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=95.83 E-value=0.026 Score=44.75 Aligned_cols=82 Identities=15% Similarity=0.173 Sum_probs=54.4
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEe---eCccc
Q 024016 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFS---VKPQV 83 (274)
Q Consensus 9 ~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~---v~~~~ 83 (274)
+.+.+-|.| .+-+|.++|+.|.+.|+ +|++. +|++++.+++.+ .+. ...+.++. ..+++
T Consensus 5 ~gKvalITGas~GIG~aia~~la~~Ga----~V~i~-~r~~~~~~~~~~~l~~-----------~~~~~~~~~Dv~~~~~ 68 (268)
T d2bgka1 5 QDKVAIITGGAGGIGETTAKLFVRYGA----KVVIA-DIADDHGQKVCNNIGS-----------PDVISFVHCDVTKDED 68 (268)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHHCC-----------TTTEEEEECCTTCHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHHhcC-----------CCceEEEEccCCCHHH
Confidence 344444444 57899999999999999 99999 999998877664 110 01122222 24667
Q ss_pred HHHHHHHhccccCCCCEEEEecC
Q 024016 84 VKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
++.+++++...+.+=.++|+..+
T Consensus 69 v~~~~~~~~~~~g~iD~lVnnAG 91 (268)
T d2bgka1 69 VRNLVDTTIAKHGKLDIMFGNVG 91 (268)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHcCCcceeccccc
Confidence 88888877665544457776543
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=95.80 E-value=0.0041 Score=48.84 Aligned_cols=35 Identities=11% Similarity=0.105 Sum_probs=31.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK 49 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~ 49 (274)
.+||.|||+|.-|.+.|..|.++|+ +|+++ +|+++
T Consensus 4 ~~kV~IiGaG~aGl~~A~~L~~~G~----~v~v~-Er~~~ 38 (265)
T d2voua1 4 TDRIAVVGGSISGLTAALMLRDAGV----DVDVY-ERSPQ 38 (265)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSSS
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCC----CEEEE-eCCCC
Confidence 4699999999999999999999999 99999 88643
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=95.79 E-value=0.018 Score=45.45 Aligned_cols=80 Identities=15% Similarity=0.113 Sum_probs=54.6
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccHHH
Q 024016 12 ILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVKD 86 (274)
Q Consensus 12 ~IgiI--G~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~~~ 86 (274)
|+.+| |.+-+|.++|+.|.+.|+ +|.+. +|++++++++.+. ..+ ...+++.+.+ .++++++
T Consensus 12 K~alITGas~GIG~aia~~la~~Ga----~V~~~-~r~~~~~~~~~~~-------l~~--~g~~~~~~~~Dvs~~~~~~~ 77 (255)
T d1fmca_ 12 KCAIITGAGAGIGKEIAITFATAGA----SVVVS-DINADAANHVVDE-------IQQ--LGGQAFACRCDITSEQELSA 77 (255)
T ss_dssp CEEEETTTTSHHHHHHHHHHHTTTC----EEEEE-ESCHHHHHHHHHH-------HHH--TTCCEEEEECCTTCHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-------HHH--cCCcEEEEEccCCCHHHHHH
Confidence 56666 668899999999999999 99999 9999887766531 011 1123344433 4566788
Q ss_pred HHHHhccccCCCCEEEEec
Q 024016 87 VAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~ 105 (274)
+++++...+.+=.++|+..
T Consensus 78 ~~~~~~~~~g~iDilvnnA 96 (255)
T d1fmca_ 78 LADFAISKLGKVDILVNNA 96 (255)
T ss_dssp HHHHHHHHHSSCCEEEECC
T ss_pred HHHHHHHHcCCCCEeeeCC
Confidence 8877766554445777654
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=95.78 E-value=0.014 Score=45.98 Aligned_cols=77 Identities=14% Similarity=0.183 Sum_probs=53.7
Q ss_pred eEEEE-c-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEe---eCcccHH
Q 024016 12 ILGFI-G-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFS---VKPQVVK 85 (274)
Q Consensus 12 ~IgiI-G-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~---v~~~~~~ 85 (274)
|+.+| | .+-||.++++.|.+.|+ +|.+. +|++++.+++.+ .+. ..+++. ..+++++
T Consensus 7 K~alITGas~GIG~aia~~la~~Ga----~V~~~-~~~~~~~~~~~~~~~~-------------~~~~~~~Dv~~~~~~~ 68 (253)
T d1hxha_ 7 KVALVTGGASGVGLEVVKLLLGEGA----KVAFS-DINEAAGQQLAAELGE-------------RSMFVRHDVSSEADWT 68 (253)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC----EEEEE-CSCHHHHHHHHHHHCT-------------TEEEECCCTTCHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHHhCC-------------CeEEEEeecCCHHHHH
Confidence 44555 5 57799999999999999 99999 999998887765 221 122222 2456678
Q ss_pred HHHHHhccccCCCCEEEEecC
Q 024016 86 DVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~~ 106 (274)
++++++...+.+=.++|+..+
T Consensus 69 ~~~~~~~~~~g~iDilVnnAG 89 (253)
T d1hxha_ 69 LVMAAVQRRLGTLNVLVNNAG 89 (253)
T ss_dssp HHHHHHHHHHCSCCEEEECCC
T ss_pred HHHHHHHHHhCCCCeEEeccc
Confidence 888877665545467787643
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=95.77 E-value=0.021 Score=45.21 Aligned_cols=82 Identities=15% Similarity=0.128 Sum_probs=54.5
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccHH
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVK 85 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~~ 85 (274)
.+++-|.|. +.||.++++.|.+.|+ +|.+. +|++++++++.+. ..+ ...++..+.+ .+++++
T Consensus 5 gK~alITGas~GIG~aia~~la~~Ga----~V~~~-~r~~~~l~~~~~~-------~~~--~g~~~~~~~~Dv~~~~~v~ 70 (260)
T d1zema1 5 GKVCLVTGAGGNIGLATALRLAEEGT----AIALL-DMNREALEKAEAS-------VRE--KGVEARSYVCDVTSEEAVI 70 (260)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHT--TTSCEEEEECCTTCHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-------HHh--cCCcEEEEEccCCCHHHHH
Confidence 344555555 7799999999999999 99999 9999888766541 001 1223444433 456688
Q ss_pred HHHHHhccccCCCCEEEEec
Q 024016 86 DVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~ 105 (274)
++++++...+.+=.++|+..
T Consensus 71 ~~~~~~~~~~g~iDilVnna 90 (260)
T d1zema1 71 GTVDSVVRDFGKIDFLFNNA 90 (260)
T ss_dssp HHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHhCCCCeehhhh
Confidence 88887765554445677653
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.77 E-value=0.0037 Score=46.93 Aligned_cols=36 Identities=25% Similarity=0.222 Sum_probs=31.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
..+||.|||.|..|...|..|.+.|+ .+|+++ +|++
T Consensus 3 ~~~kVaIIGaGpaGl~aA~~l~~~G~---~~V~v~-E~~~ 38 (196)
T d1gtea4 3 YSAKIALLGAGPASISCASFLARLGY---SDITIF-EKQE 38 (196)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTTC---CCEEEE-ESSS
T ss_pred CCCEEEEECChHHHHHHHHHHHHCCC---CeEEEE-EecC
Confidence 35799999999999999999999998 149999 7765
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=95.76 E-value=0.0065 Score=45.02 Aligned_cols=85 Identities=18% Similarity=0.112 Sum_probs=56.4
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhh------ccCCCEEEEeeCcc
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAV------VEYSDVVVFSVKPQ 82 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~------~~~aDiIil~v~~~ 82 (274)
..+|.|.|. |.+|....+.....|. +|++. ++++++.+.+++.|+...-+..+. -..+|+||=|+.+
T Consensus 28 g~~VlI~ga~G~vG~~aiqlak~~G~----~vi~~-~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G~- 101 (171)
T d1iz0a2 28 GEKVLVQAAAGALGTAAVQVARAMGL----RVLAA-ASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRGK- 101 (171)
T ss_dssp TCEEEESSTTBHHHHHHHHHHHHTTC----EEEEE-ESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECSCT-
T ss_pred CCEEEEEeccccchhhhhhhhccccc----ccccc-cccccccccccccccceeeehhhhhhhhhccccccccccccch-
Confidence 458999995 9999999888888898 89888 888999988888887432222221 2357777776652
Q ss_pred cHHHHHHHhccccCCCCEEEEe
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~ 104 (274)
.+.+.+. .++++..++.+
T Consensus 102 ~~~~~~~----~l~~~G~~v~~ 119 (171)
T d1iz0a2 102 EVEESLG----LLAHGGRLVYI 119 (171)
T ss_dssp THHHHHT----TEEEEEEEEEC
T ss_pred hHHHHHH----HHhcCCcEEEE
Confidence 3443333 33444455543
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=95.75 E-value=0.017 Score=45.34 Aligned_cols=72 Identities=17% Similarity=0.211 Sum_probs=46.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC----------HHHHH------------HHHH-cCceeccC
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN----------LKRRD------------AFES-IGVKVLSD 64 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~----------~~~~~------------~l~~-~g~~~~~~ 64 (274)
.+.++|.|-|.|++|+..++.|.+.|. .|+.+.|.+ .+.+. .+.. .+.....+
T Consensus 29 l~g~~v~IqGfGnVG~~~a~~L~~~Ga----kvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (242)
T d1v9la1 29 IEGKTVAIQGMGNVGRWTAYWLEKMGA----KVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKN 104 (242)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTC----EEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC----eEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeC
Confidence 356799999999999999999999998 775442332 11111 1111 23343334
Q ss_pred chhhc-cCCCEEEEeeCccc
Q 024016 65 NNAVV-EYSDVVVFSVKPQV 83 (274)
Q Consensus 65 ~~~~~-~~aDiIil~v~~~~ 83 (274)
+.++. .+|||++-|-....
T Consensus 105 ~~~i~~~~~DIliPcA~~~~ 124 (242)
T d1v9la1 105 PDAIFKLDVDIFVPAAIENV 124 (242)
T ss_dssp TTGGGGCCCSEEEECSCSSC
T ss_pred cchhccccccEEeecchhcc
Confidence 44444 48999999865443
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=95.73 E-value=0.016 Score=47.67 Aligned_cols=70 Identities=13% Similarity=0.216 Sum_probs=49.9
Q ss_pred CCCCCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHc------C-c--eec------cCchhh
Q 024016 5 PIPAESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESI------G-V--KVL------SDNNAV 68 (274)
Q Consensus 5 ~~~~~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~------g-~--~~~------~~~~~~ 68 (274)
+...+.++|.|.| +|-+|+.+++.|+++|| +|.+. .|+.++.+.+.+. + . .+. .+..++
T Consensus 6 ~~~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~----~V~~~-vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 80 (342)
T d1y1pa1 6 AVLPEGSLVLVTGANGFVASHVVEQLLEHGY----KVRGT-ARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEV 80 (342)
T ss_dssp CSSCTTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTT
T ss_pred CCCCCcCEEEEECCCCHHHHHHHHHHHHCcC----EEEEE-eCCchhHHHHHHhhhccccccccEEEeccccchhhhhhh
Confidence 3344567999995 59999999999999999 99988 7888776665431 1 1 111 123456
Q ss_pred ccCCCEEEEee
Q 024016 69 VEYSDVVVFSV 79 (274)
Q Consensus 69 ~~~aDiIil~v 79 (274)
+.++|.|+-+.
T Consensus 81 ~~~~~~v~~~a 91 (342)
T d1y1pa1 81 IKGAAGVAHIA 91 (342)
T ss_dssp TTTCSEEEECC
T ss_pred cccchhhhhhc
Confidence 78899988665
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=95.69 E-value=0.0051 Score=50.59 Aligned_cols=37 Identities=19% Similarity=0.126 Sum_probs=30.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
.++||+|||+|.-|.+.|..|++.|. ..+|+++ .|+.
T Consensus 3 ~~KrVaIIGaG~sGl~~A~~L~~~~~--~~~v~vf-Ek~~ 39 (335)
T d2gv8a1 3 TIRKIAIIGAGPSGLVTAKALLAEKA--FDQVTLF-ERRG 39 (335)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTC--CSEEEEE-CSSS
T ss_pred CCCeEEEECcCHHHHHHHHHHHHhCC--CCCEEEE-ECCC
Confidence 45689999999999999999988762 1289999 8774
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=95.68 E-value=0.013 Score=46.22 Aligned_cols=79 Identities=19% Similarity=0.193 Sum_probs=52.3
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHHH
Q 024016 10 SFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVA 88 (274)
Q Consensus 10 ~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~ 88 (274)
.+++-|.| .+.||.++++.|.+.|+ +|.+. +|+++..+...+.+.... .+|+ +.++++++++
T Consensus 5 GK~alITGas~GIG~aia~~la~~G~----~V~~~-~~~~~~~~~~~~~~~~~~--------~~Dv----~~~~~v~~~~ 67 (248)
T d2d1ya1 5 GKGVLVTGGARGIGRAIAQAFAREGA----LVALC-DLRPEGKEVAEAIGGAFF--------QVDL----EDERERVRFV 67 (248)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESSTTHHHHHHHHTCEEE--------ECCT----TCHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHcCCeEE--------EEeC----CCHHHHHHHH
Confidence 34454554 68999999999999999 99999 998876554433332211 1232 2456788888
Q ss_pred HHhccccCCCCEEEEec
Q 024016 89 MQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 89 ~~i~~~l~~~~~vis~~ 105 (274)
+++...+.+=.++|+..
T Consensus 68 ~~~~~~~G~iDiLVnnA 84 (248)
T d2d1ya1 68 EEAAYALGRVDVLVNNA 84 (248)
T ss_dssp HHHHHHHSCCCEEEECC
T ss_pred HHHHHhcCCCCeEEEeC
Confidence 87766554435777653
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.64 E-value=0.0071 Score=48.47 Aligned_cols=79 Identities=18% Similarity=0.171 Sum_probs=52.7
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----cCceeccCchhhccCCCEEEEee---Ccc
Q 024016 12 ILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IGVKVLSDNNAVVEYSDVVVFSV---KPQ 82 (274)
Q Consensus 12 ~IgiI--G~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~----~g~~~~~~~~~~~~~aDiIil~v---~~~ 82 (274)
|+.+| |.+-+|.++++.|.+.|+ +|.+. +|++++++++.+ .|.. ...+..+.. .++
T Consensus 5 K~alITGas~GIG~aia~~la~~Ga----~V~~~-~r~~~~l~~~~~~i~~~~~~----------~~~~~~~~~Dv~~~~ 69 (274)
T d1xhla_ 5 KSVIITGSSNGIGRSAAVIFAKEGA----QVTIT-GRNEDRLEETKQQILKAGVP----------AEKINAVVADVTEAS 69 (274)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHHHHTTCC----------GGGEEEEECCTTSHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHHHHHcCCC----------CcceEEEEeeCCCHH
Confidence 34455 557899999999999999 99999 999988776654 1110 112333333 466
Q ss_pred cHHHHHHHhccccCCCCEEEEec
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~~ 105 (274)
+++++++++...+.+=.++|+..
T Consensus 70 ~v~~~~~~~~~~~G~iDilVnnA 92 (274)
T d1xhla_ 70 GQDDIINTTLAKFGKIDILVNNA 92 (274)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHHcCCceEEEeec
Confidence 78888887766554435677653
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.60 E-value=0.014 Score=49.86 Aligned_cols=78 Identities=14% Similarity=0.191 Sum_probs=53.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-------------------HHHH----HHHH--cCce--e-
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL-------------------KRRD----AFES--IGVK--V- 61 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-------------------~~~~----~l~~--~g~~--~- 61 (274)
..||.|||+|.+|+.++++|...|. .+++++ |.+. .|++ .+.+ ..++ .
T Consensus 37 ~~kVlvvG~GglG~ei~k~L~~~Gv---g~i~lv-D~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 112 (426)
T d1yovb1 37 TCKVLVIGAGGLGCELLKNLALSGF---RQIHVI-DMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPH 112 (426)
T ss_dssp HCCEEEECSSTTHHHHHHHHHTTTC---CCEEEE-CCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEE
T ss_pred cCeEEEECCCHHHHHHHHHHHHcCC---CeEEEE-ECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEee
Confidence 4689999999999999999999997 367777 5422 1122 2222 2222 1
Q ss_pred ----ccCchhhccCCCEEEEeeCcccHHHHHHHh
Q 024016 62 ----LSDNNAVVEYSDVVVFSVKPQVVKDVAMQI 91 (274)
Q Consensus 62 ----~~~~~~~~~~aDiIil~v~~~~~~~v~~~i 91 (274)
.+...+.++++|+||.|+.....+..+.+.
T Consensus 113 ~~~i~~~~~~~~~~~DlVi~~~Dn~~aR~~in~~ 146 (426)
T d1yovb1 113 FNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGM 146 (426)
T ss_dssp CSCGGGBCHHHHTTCSEEEECCSCHHHHHHHHHH
T ss_pred eccccchHHHHHHhcchheeccCcHHHHHHHHHH
Confidence 223456678999999999876666666543
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=95.60 E-value=0.0051 Score=50.35 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=30.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
.+||.|||+|.-|.+.|..|.++|+ +|.++ .++.
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~----~V~vi-Ek~~ 35 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGH----QVHII-DQRD 35 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTC----EEEEE-ESSS
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCC----CEEEE-ECCC
Confidence 5799999999999999999999999 99999 6553
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=95.39 E-value=0.032 Score=43.92 Aligned_cols=82 Identities=17% Similarity=0.105 Sum_probs=54.5
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEeeCcccHHH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSVKPQVVKD 86 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v~~~~~~~ 86 (274)
+.+++-|.|. +-||.++++.|.+.|+ +|.+. +|++++.+++.+ .+-++. .-.+|+ ..++++++
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~Ga----~V~~~-~r~~~~~~~~~~~~~~~~~------~~~~Dv----~~~~~v~~ 68 (254)
T d1hdca_ 4 SGKTVIITGGARGLGAEAARQAVAAGA----RVVLA-DVLDEEGAATARELGDAAR------YQHLDV----TIEEDWQR 68 (254)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHTTGGGEE------EEECCT----TCHHHHHH
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHHhCCceE------EEEccc----CCHHHHHH
Confidence 4556666655 6799999999999999 99999 999988877664 221100 011221 24667888
Q ss_pred HHHHhccccCCCCEEEEec
Q 024016 87 VAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~ 105 (274)
+++++...+.+=.++|+..
T Consensus 69 ~~~~~~~~~g~iDilVnnA 87 (254)
T d1hdca_ 69 VVAYAREEFGSVDGLVNNA 87 (254)
T ss_dssp HHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHcCCccEEEecC
Confidence 8887765544435777654
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=95.37 E-value=0.036 Score=43.49 Aligned_cols=85 Identities=16% Similarity=0.206 Sum_probs=55.4
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---Cccc
Q 024016 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQV 83 (274)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~ 83 (274)
++.+++-|.|. +.||.++|+.|.+.|+ +|.+. +|++++.++..+. ..+ -...+++.+.+ .+++
T Consensus 3 l~gK~~lITGas~GIG~aia~~la~~Ga----~V~i~-~r~~~~~~~~~~~-------l~~-~~g~~~~~~~~Dv~~~~~ 69 (251)
T d1vl8a_ 3 LRGRVALVTGGSRGLGFGIAQGLAEAGC----SVVVA-SRNLEEASEAAQK-------LTE-KYGVETMAFRCDVSNYEE 69 (251)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHH-HHCCCEEEEECCTTCHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-------HHH-HhCCcEEEEEccCCCHHH
Confidence 34555555555 7799999999999999 99999 9999887655431 000 01223443333 4567
Q ss_pred HHHHHHHhccccCCCCEEEEec
Q 024016 84 VKDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~~ 105 (274)
++.+++++...+.+=.++|+..
T Consensus 70 v~~~~~~~~~~~g~iDiLVnnA 91 (251)
T d1vl8a_ 70 VKKLLEAVKEKFGKLDTVVNAA 91 (251)
T ss_dssp HHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHcCCCCEEEECC
Confidence 8888887766554435777654
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=95.36 E-value=0.045 Score=43.34 Aligned_cols=80 Identities=8% Similarity=0.149 Sum_probs=50.1
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCCCCCcEEEEeCCC-HHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccHH
Q 024016 12 ILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSN-LKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVK 85 (274)
Q Consensus 12 ~IgiI--G~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~-~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~~ 85 (274)
|+.+| |.+.+|.++++.|.++|+ +|++. +|+ .+.++.+.+. ..+ ...++.++.. .++++.
T Consensus 19 K~~lITGas~GIG~aia~~la~~Ga----~Vvi~-~~~~~~~~~~~~~~-------~~~--~g~~~~~~~~D~~~~~~v~ 84 (272)
T d1g0oa_ 19 KVALVTGAGRGIGREMAMELGRRGC----KVIVN-YANSTESAEEVVAA-------IKK--NGSDAACVKANVGVVEDIV 84 (272)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC----EEEEE-ESSCHHHHHHHHHH-------HHH--TTCCEEEEECCTTCHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC----EEEEE-eCCchHHHHHHHHH-------HHh--hCCceeeEeCCCCCHHHHH
Confidence 45555 579999999999999999 99887 554 5555544430 000 1123344433 456677
Q ss_pred HHHHHhccccCCCCEEEEec
Q 024016 86 DVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~ 105 (274)
+.++++...+.+=.++|+..
T Consensus 85 ~~~~~~~~~~g~idilV~na 104 (272)
T d1g0oa_ 85 RMFEEAVKIFGKLDIVCSNS 104 (272)
T ss_dssp HHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHhCCCCcccccc
Confidence 88877766554445667654
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.28 E-value=0.026 Score=41.52 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=39.8
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~ 60 (274)
...+|.|+|+ |.+|....+-....|. +|++. .+++++.+.+++.|+.
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~----~vi~~-~~~~~~~~~~~~~Ga~ 75 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGL----KILGT-AGTEEGQKIVLQNGAH 75 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHHTTCS
T ss_pred CCCEEEEEeccccccccccccccccCc----ccccc-cccccccccccccCcc
Confidence 3468999995 9999999988888898 89888 7888888888888864
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.23 E-value=0.0017 Score=50.47 Aligned_cols=24 Identities=25% Similarity=0.184 Sum_probs=23.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGV 34 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~ 34 (274)
|||.|||+|.+|.+.|..|.++|+
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~G~ 24 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHERYH 24 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHT
T ss_pred CEEEEECchHHHHHHHHHHHHCCC
Confidence 699999999999999999999997
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=95.16 E-value=0.019 Score=45.93 Aligned_cols=78 Identities=14% Similarity=0.175 Sum_probs=52.4
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEee---CcccH
Q 024016 10 SFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (274)
Q Consensus 10 ~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v---~~~~~ 84 (274)
.+++-|-| .+.||.++++.|.+.|+ +|.+. +|++++++++.+ .|. ++..+.. .++.+
T Consensus 5 gK~alITGas~GIG~aia~~la~~Ga----~V~i~-~r~~~~l~~~~~~~~~-------------~~~~~~~Dv~~~~~~ 66 (276)
T d1bdba_ 5 GEAVLITGGASGLGRALVDRFVAEGA----KVAVL-DKSAERLAELETDHGD-------------NVLGIVGDVRSLEDQ 66 (276)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHHHGG-------------GEEEEECCTTCHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHHcCC-------------CeeEEecccccHHHH
Confidence 34455555 58999999999999999 99999 999988877654 221 2222222 34567
Q ss_pred HHHHHHhccccCCCCEEEEec
Q 024016 85 KDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~ 105 (274)
++++.++...+.+=.++|+..
T Consensus 67 ~~~~~~~~~~~g~idilvnnA 87 (276)
T d1bdba_ 67 KQAASRCVARFGKIDTLIPNA 87 (276)
T ss_dssp HHHHHHHHHHHSCCCEEECCC
T ss_pred HHHHHHHHHHhCCcccccccc
Confidence 777777665554445667543
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=95.12 E-value=0.013 Score=40.39 Aligned_cols=33 Identities=12% Similarity=0.086 Sum_probs=30.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
+||.|||.|..|.-+|..|.+.|. +|+++ .|.+
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~G~----~Vtlv-e~~~ 54 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGLGA----KTHLF-EMFD 54 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSS
T ss_pred CEEEEECCChhhHHHHHHhhcccc----EEEEE-eecc
Confidence 589999999999999999999998 99999 7754
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=95.11 E-value=0.0094 Score=47.12 Aligned_cols=32 Identities=25% Similarity=0.186 Sum_probs=29.6
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
-|.|||+|.+|.+.|..|.+.|+ +|+++ +++.
T Consensus 6 DvvIIGaGi~Gls~A~~La~~G~----~V~vl-E~~~ 37 (276)
T d1ryia1 6 EAVVIGGGIIGSAIAYYLAKENK----NTALF-ESGT 37 (276)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCC----cEEEE-eCCC
Confidence 49999999999999999999998 99999 8754
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=95.08 E-value=0.01 Score=47.08 Aligned_cols=33 Identities=18% Similarity=0.169 Sum_probs=30.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
+||.|||+|.-|.+-|..|.++|+ +|+++ ++++
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~G~----~V~vl-E~~~ 34 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIHGL----NVTVF-EAEG 34 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTSC----EEEEE-CSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC----CEEEE-eCCC
Confidence 689999999999999999999999 99999 7653
|
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.08 E-value=0.017 Score=40.83 Aligned_cols=92 Identities=11% Similarity=0.022 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHhcCCCCchHHHHHHH-------
Q 024016 183 PAYIFLAIEALADG---GVAAGLPRELALGLASQTVLGAASMVTKSG---KHPGQLKDDVASPGGTTIAGIHE------- 249 (274)
Q Consensus 183 ~~~~~~~~~~l~e~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~t~~~l~~------- 249 (274)
+.+.+..+.++.|+ +++.|++++.+++++..+..++..+-.... .-+..+....+.|+++.....+.
T Consensus 13 N~l~~~~~~a~aEal~la~~~Gld~~~~~eil~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~KDl~l~~~~ 92 (134)
T d3cuma1 13 NQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGGFMAQLMAKDLGLAQEA 92 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCCHHHHHCCCSTTSSTTSGGGGTTCSSSBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcccchhhhhhhhhhhhccchhhhcCCCCCCcchHHHHHHHHHHHHH
Confidence 33444455556665 579999999999999988876655432110 12344556668888877776543
Q ss_pred HHhCCHHHHHHHHHHHHHHHHhhcC
Q 024016 250 LEKSGFRGILMNAVVAAAKRSRELS 274 (274)
Q Consensus 250 l~~~~~~~~~~~a~~~~~~r~~~~~ 274 (274)
.++.+++..+.++..+.|+++.+.+
T Consensus 93 a~~~g~~~p~~~~a~~~~~~a~~~G 117 (134)
T d3cuma1 93 AQASASSTPMGSLALSLYRLLLKQG 117 (134)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCCChHHHHHHHHHHHHHHcC
Confidence 4556888888888899999887753
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=95.05 E-value=0.009 Score=47.48 Aligned_cols=68 Identities=21% Similarity=0.232 Sum_probs=47.5
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH------HHHHH---HcCceecc-C------chhhccC
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKR------RDAFE---SIGVKVLS-D------NNAVVEY 71 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~------~~~l~---~~g~~~~~-~------~~~~~~~ 71 (274)
.++||.|+|+ |.+|++++..|+++|| +|++. +|++.. .+.+. ..++.+.. + ..+..+.
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G~----~V~~l-~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 76 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLGH----PTFLL-VRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKN 76 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTC----CEEEE-CCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC----eEEEE-ECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhh
Confidence 4679999985 9999999999999999 99999 886533 22222 23444321 1 2344668
Q ss_pred CCEEEEeeCc
Q 024016 72 SDVVVFSVKP 81 (274)
Q Consensus 72 aDiIil~v~~ 81 (274)
+|.++.+...
T Consensus 77 ~~~vi~~~~~ 86 (307)
T d1qyca_ 77 VDVVISTVGS 86 (307)
T ss_dssp CSEEEECCCG
T ss_pred ceeeeecccc
Confidence 8988887753
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.03 E-value=0.027 Score=41.73 Aligned_cols=86 Identities=14% Similarity=0.148 Sum_probs=56.3
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceec---cC--chhhc------cCCCEEEE
Q 024016 10 SFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVL---SD--NNAVV------EYSDVVVF 77 (274)
Q Consensus 10 ~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~---~~--~~~~~------~~aDiIil 77 (274)
..+|.|.| +|.+|...++-....|. ++++. .+++++.+.+++.|+... .+ ..+.+ +..|+||-
T Consensus 26 g~~VlI~ga~g~vG~~~iqla~~~g~----~vi~~-~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d 100 (183)
T d1pqwa_ 26 GERVLIHSATGGVGMAAVSIAKMIGA----RIYTT-AGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLN 100 (183)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHHTC----EEEEE-ESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEE
T ss_pred CCEEEEECCCCCcccccchhhccccc----cceee-ecccccccccccccccccccCCccCHHHHHHHHhCCCCEEEEEe
Confidence 46898888 59999999998888888 88888 788888888887775321 11 11111 24677777
Q ss_pred eeCcccHHHHHHHhccccCCCCEEEEe
Q 024016 78 SVKPQVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 78 ~v~~~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
|+..+.++..+.-+ +++..+|.+
T Consensus 101 ~~g~~~~~~~~~~l----~~~G~~v~~ 123 (183)
T d1pqwa_ 101 SLAGEAIQRGVQIL----APGGRFIEL 123 (183)
T ss_dssp CCCTHHHHHHHHTE----EEEEEEEEC
T ss_pred cccchHHHHHHHHh----cCCCEEEEE
Confidence 77655555544332 334455544
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.02 E-value=0.011 Score=48.85 Aligned_cols=38 Identities=21% Similarity=0.377 Sum_probs=32.5
Q ss_pred CCCCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 6 IPAESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 6 ~~~~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
|+.+.|||.|.| +|-+|+.++..|++.|| +|++. ++..
T Consensus 11 ~~~~nMKILVTGgsGfIGs~lv~~L~~~g~----~V~~~-d~~~ 49 (363)
T d2c5aa1 11 WPSENLKISITGAGGFIASHIARRLKHEGH----YVIAS-DWKK 49 (363)
T ss_dssp CTTSCCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESSC
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCcC----EEEEE-eCCC
Confidence 445779999995 79999999999999999 99988 6643
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.97 E-value=0.021 Score=39.60 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=30.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
+++.|||.|.+|.-+|..|.+.|. +|+++ .|++
T Consensus 24 ~~~vIiG~G~ig~E~A~~l~~lG~----~Vtii-~~~~ 56 (122)
T d1v59a2 24 KRLTIIGGGIIGLEMGSVYSRLGS----KVTVV-EFQP 56 (122)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSS
T ss_pred CeEEEECCCchHHHHHHHHHhhCc----ceeEE-Eecc
Confidence 689999999999999999999998 99999 7754
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.97 E-value=0.086 Score=41.42 Aligned_cols=86 Identities=12% Similarity=0.052 Sum_probs=55.1
Q ss_pred CCCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---Ccc
Q 024016 7 PAESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQ 82 (274)
Q Consensus 7 ~~~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~ 82 (274)
.++.+++-|.| .+.+|.++|+.|.+.|+ +|.++ +|++++++++.+. ..+ ...++..+.+ .++
T Consensus 5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga----~V~~~-~r~~~~l~~~~~~-------~~~--~~~~~~~~~~Dv~~~~ 70 (259)
T d1xq1a_ 5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGA----VIHTC-ARNEYELNECLSK-------WQK--KGFQVTGSVCDASLRP 70 (259)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHHH-------HHH--TTCCEEEEECCTTSHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-------HHh--cCCceEEEeccCCCHH
Confidence 34455555554 57799999999999999 99999 9999888766541 000 1123333333 345
Q ss_pred cHHHHHHHhcccc-CCCCEEEEecC
Q 024016 83 VVKDVAMQIRPLL-SRKKLLVSVAA 106 (274)
Q Consensus 83 ~~~~v~~~i~~~l-~~~~~vis~~~ 106 (274)
+++.+++++...+ .+=.++|+..+
T Consensus 71 ~v~~~~~~~~~~~~g~idilvnnAG 95 (259)
T d1xq1a_ 71 EREKLMQTVSSMFGGKLDILINNLG 95 (259)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred HHHHHHHHHHHHhCCCccccccccc
Confidence 6777777766554 23356776644
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.94 E-value=0.013 Score=40.35 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=30.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
++|.|||.|.+|.-+|..|.+.|. +|+++ .|.+
T Consensus 23 ~~v~IiGgG~ig~E~A~~l~~~G~----~Vtlv-e~~~ 55 (117)
T d1ebda2 23 KSLVVIGGGYIGIELGTAYANFGT----KVTIL-EGAG 55 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESSS
T ss_pred CeEEEECCCccceeeeeeeccccc----EEEEE-Eecc
Confidence 689999999999999999999998 99999 6654
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=94.94 E-value=0.047 Score=41.89 Aligned_cols=37 Identities=19% Similarity=0.208 Sum_probs=31.2
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
.+...||.|.|+|.-|..+++.|.+.+. .+++++ ||.
T Consensus 23 ~l~d~riv~~GAGsAg~gia~~l~~~~~---~~i~~~-D~~ 59 (222)
T d1vl6a1 23 KIEEVKVVVNGIGAAGYNIVKFLLDLGV---KNVVAV-DRK 59 (222)
T ss_dssp CTTTCEEEEECCSHHHHHHHHHHHHHTC---CEEEEE-ETT
T ss_pred ChhhcEEEEEChHHHHHHHHHHHHHhcc---cceEee-cce
Confidence 3456799999999999999999999886 378888 764
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=94.87 E-value=0.061 Score=42.31 Aligned_cols=82 Identities=16% Similarity=0.131 Sum_probs=52.3
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCCCCCcEEEEeCCC-HHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccHH
Q 024016 12 ILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSN-LKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVK 85 (274)
Q Consensus 12 ~IgiI--G~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~-~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~~ 85 (274)
|+.+| |.+.||.++|+.|.+.|+ +|.+. +|+ ++..+++.+. ..+ -...+++++.+ .+++++
T Consensus 5 K~alITGas~GIG~aiA~~la~~Ga----~V~~~-~r~~~~~~~~~~~~-------~~~-~~g~~~~~~~~Dv~~~~~v~ 71 (260)
T d1x1ta1 5 KVAVVTGSTSGIGLGIATALAAQGA----DIVLN-GFGDAAEIEKVRAG-------LAA-QHGVKVLYDGADLSKGEAVR 71 (260)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC----EEEEE-CCSCHHHHHHHHHH-------HHH-HHTSCEEEECCCTTSHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-eCCcHHHHHHHHHH-------HHH-hcCCcEEEEECCCCCHHHHH
Confidence 56666 557799999999999999 99999 886 4555554420 000 01233444443 456688
Q ss_pred HHHHHhccccCCCCEEEEecC
Q 024016 86 DVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~~ 106 (274)
++++++...+.+=.++|+..+
T Consensus 72 ~~~~~~~~~~G~iDiLVnnAG 92 (260)
T d1x1ta1 72 GLVDNAVRQMGRIDILVNNAG 92 (260)
T ss_dssp HHHHHHHHHHSCCSEEEECCC
T ss_pred HHHHHHHHHhCCCcEEEeecc
Confidence 888877665544457786643
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.85 E-value=0.011 Score=47.19 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=31.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK 49 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~ 49 (274)
.+|.|||+|.-|..+|..|.+.|+ +|.++ +|+++
T Consensus 3 ~~V~IvGaGp~Gl~~A~~L~~~G~----~v~vl-E~~~~ 36 (292)
T d1k0ia1 3 TQVAIIGAGPSGLLLGQLLHKAGI----DNVIL-ERQTP 36 (292)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTC----CEEEE-CSSCH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCC----CEEEE-eCCCC
Confidence 379999999999999999999999 99999 88764
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=94.82 E-value=0.016 Score=40.19 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=30.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
.++|.|||.|.+|.-+|..|.+.|. +|+++ .+++
T Consensus 30 ~~~vvIIGgG~iG~E~A~~l~~~g~----~Vtli-~~~~ 63 (121)
T d1d7ya2 30 QSRLLIVGGGVIGLELAATARTAGV----HVSLV-ETQP 63 (121)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESSS
T ss_pred CCeEEEECcchhHHHHHHHhhcccc----eEEEE-eecc
Confidence 3689999999999999999999998 99999 6654
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.75 E-value=0.013 Score=45.13 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=29.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhC--CCCCCCcEEEEeCCCHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKS--GVLPPDRICTAVHSNLK 49 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~--g~~~~~~v~v~~~r~~~ 49 (274)
+||+|||+|.-|.+-|..|.++ |+ +|++| ++.+.
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~----~V~v~-e~~~~ 37 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRA----HVDIY-EKQLV 37 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSC----EEEEE-CSSSS
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCC----eEEEE-eCCCC
Confidence 5999999999999999999876 66 89999 88753
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=94.72 E-value=0.062 Score=41.78 Aligned_cols=81 Identities=16% Similarity=0.098 Sum_probs=53.2
Q ss_pred CeEEEE-cc-cHHHHHHHHHHHhCCCCCCCc-------EEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee--
Q 024016 11 FILGFI-GA-GKMAESIAKGVAKSGVLPPDR-------ICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV-- 79 (274)
Q Consensus 11 ~~IgiI-G~-G~mG~~~a~~L~~~g~~~~~~-------v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v-- 79 (274)
++|.+| |+ +-+|.++++.|.+.|+ + |.++ +|++++++++.+. ..+ ...++.++.+
T Consensus 1 K~VvlITGas~GIG~aia~~la~~G~----~~~~~~~~v~~~-~r~~~~l~~~~~~-------~~~--~g~~~~~~~~Dv 66 (240)
T d2bd0a1 1 KHILLITGAGKGIGRAIALEFARAAR----HHPDFEPVLVLS-SRTAADLEKISLE-------CRA--EGALTDTITADI 66 (240)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTT----TCTTCCEEEEEE-ESCHHHHHHHHHH-------HHT--TTCEEEEEECCT
T ss_pred CCEEEEccCCCHHHHHHHHHHHHhCc----cccccCcEEEEE-eCCHHHHHHHHHH-------HHh--cCCcEEEEEecC
Confidence 366666 54 7799999999999997 5 7788 9999888776531 000 1123333333
Q ss_pred -CcccHHHHHHHhccccCCCCEEEEec
Q 024016 80 -KPQVVKDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 80 -~~~~~~~v~~~i~~~l~~~~~vis~~ 105 (274)
.+++++++++++...+.+=.++|+..
T Consensus 67 t~~~~v~~~~~~~~~~~g~iDilvnnA 93 (240)
T d2bd0a1 67 SDMADVRRLTTHIVERYGHIDCLVNNA 93 (240)
T ss_dssp TSHHHHHHHHHHHHHHTSCCSEEEECC
T ss_pred CCHHHHHHHHHHHHHHcCCcceeeccc
Confidence 35667888887766554445777654
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.65 E-value=0.07 Score=39.74 Aligned_cols=67 Identities=19% Similarity=0.203 Sum_probs=49.9
Q ss_pred CCCCeEEEEcc--cHHHHHHHHHHHhCCCCCCCcEEEEeCCC-----HHHHHHHHH----cC--ceeccCchhhccCCCE
Q 024016 8 AESFILGFIGA--GKMAESIAKGVAKSGVLPPDRICTAVHSN-----LKRRDAFES----IG--VKVLSDNNAVVEYSDV 74 (274)
Q Consensus 8 ~~~~~IgiIG~--G~mG~~~a~~L~~~g~~~~~~v~v~~~r~-----~~~~~~l~~----~g--~~~~~~~~~~~~~aDi 74 (274)
.+..||+|||= -++..+++..+.+-|. ++++. .+. ++-.+.+.+ .| +.+.+++.++++++|+
T Consensus 3 l~~lkia~vGD~~nnV~~Sli~~~~~~G~----~l~l~-~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDv 77 (185)
T d1dxha2 3 LHDISYAYLGDARNNMGNSLLLIGAKLGM----DVRIA-APKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDF 77 (185)
T ss_dssp GGGCEEEEESCCSSHHHHHHHHHHHHTTC----EEEEE-CCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSE
T ss_pred CCCCEEEEEcCCcchHHHHHHHHHHHcCC----EEEEE-ccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhccccccE
Confidence 35689999994 4899999999999998 99998 653 222232222 23 4567888999999999
Q ss_pred EEEee
Q 024016 75 VVFSV 79 (274)
Q Consensus 75 Iil~v 79 (274)
|..-+
T Consensus 78 Vyt~~ 82 (185)
T d1dxha2 78 VHTDV 82 (185)
T ss_dssp EEECC
T ss_pred EEeeh
Confidence 88755
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.57 E-value=0.018 Score=45.80 Aligned_cols=44 Identities=16% Similarity=0.143 Sum_probs=36.3
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH
Q 024016 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (274)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~ 56 (274)
.+.+++-|.|+ +-||.++|+.|.+.|+ +|++. +|++++.+++.+
T Consensus 12 L~GK~alITGassGIG~aiA~~la~~G~----~Vil~-~r~~~~l~~~~~ 56 (269)
T d1xu9a_ 12 LQGKKVIVTGASKGIGREMAYHLAKMGA----HVVVT-ARSKETLQKVVS 56 (269)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHH
Confidence 45566666665 6699999999999999 99999 999998887654
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=94.53 E-value=0.026 Score=44.51 Aligned_cols=81 Identities=12% Similarity=0.087 Sum_probs=51.9
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccHHH
Q 024016 12 ILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVKD 86 (274)
Q Consensus 12 ~IgiI--G~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~~~ 86 (274)
|+.+| |.+.+|.++++.|.+.|+ +|++. +|++++.+++.+. ..+. ...+++.+.. .++.++.
T Consensus 10 K~alITGas~GIG~aia~~la~~Ga----~V~i~-~r~~~~~~~~~~~-------~~~~-~g~~~~~~~~Dv~~~~~v~~ 76 (260)
T d1h5qa_ 10 KTIIVTGGNRGIGLAFTRAVAAAGA----NVAVI-YRSAADAVEVTEK-------VGKE-FGVKTKAYQCDVSNTDIVTK 76 (260)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTE----EEEEE-ESSCTTHHHHHHH-------HHHH-HTCCEEEEECCTTCHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHHH-------HHHH-hCCceEEEEccCCCHHHHHH
Confidence 45555 456799999999999999 99999 8988776654431 0000 0123444433 4566888
Q ss_pred HHHHhccccCCCCEEEEec
Q 024016 87 VAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~ 105 (274)
+++++...+.+=.++|+..
T Consensus 77 ~~~~~~~~~g~iDilVnnA 95 (260)
T d1h5qa_ 77 TIQQIDADLGPISGLIANA 95 (260)
T ss_dssp HHHHHHHHSCSEEEEEECC
T ss_pred HHHHHHHHhCCCcEecccc
Confidence 8887766554435677653
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=94.51 E-value=0.024 Score=39.93 Aligned_cols=34 Identities=18% Similarity=0.222 Sum_probs=30.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
..+|.|||.|.+|.-+|..|.+.|. +|+++ .+.+
T Consensus 35 ~k~v~VIGgG~iG~E~A~~l~~~g~----~Vtvi-e~~~ 68 (133)
T d1q1ra2 35 DNRLVVIGGGYIGLEVAATAIKANM----HVTLL-DTAA 68 (133)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSS
T ss_pred CCEEEEECCchHHHHHHHHHHhhCc----ceeee-eecc
Confidence 4689999999999999999999998 99999 7654
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=94.51 E-value=0.029 Score=43.93 Aligned_cols=77 Identities=26% Similarity=0.324 Sum_probs=49.7
Q ss_pred eEEEE-c-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH-HHHHH-HcCceeccCchhhccCCCEEEEee---CcccH
Q 024016 12 ILGFI-G-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-RDAFE-SIGVKVLSDNNAVVEYSDVVVFSV---KPQVV 84 (274)
Q Consensus 12 ~IgiI-G-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~-~~~l~-~~g~~~~~~~~~~~~~aDiIil~v---~~~~~ 84 (274)
|+++| | .+.||.++++.|.++|+ +|.+. +|+++. .+... +.| .++..+.+ .++++
T Consensus 6 KvalVTGas~GIG~aia~~la~~Ga----~V~~~-~~~~~~~~~~~~~~~g-------------~~~~~~~~Dvs~~~~v 67 (247)
T d2ew8a1 6 KLAVITGGANGIGRAIAERFAVEGA----DIAIA-DLVPAPEAEAAIRNLG-------------RRVLTVKCDVSQPGDV 67 (247)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESSCCHHHHHHHHHTT-------------CCEEEEECCTTCHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCchHHHHHHHHHcC-------------CcEEEEEeeCCCHHHH
Confidence 45555 5 47799999999999999 99999 887643 22222 122 23333333 46678
Q ss_pred HHHHHHhccccCCCCEEEEecC
Q 024016 85 KDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~~ 106 (274)
+.+++++...+.+=.++|+..+
T Consensus 68 ~~~~~~~~~~~G~iDilVnnAG 89 (247)
T d2ew8a1 68 EAFGKQVISTFGRCDILVNNAG 89 (247)
T ss_dssp HHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 8888877665544457787643
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.50 E-value=0.018 Score=45.00 Aligned_cols=40 Identities=15% Similarity=0.172 Sum_probs=33.5
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH
Q 024016 12 ILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (274)
Q Consensus 12 ~IgiI--G~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~ 56 (274)
|+++| |.+.+|.++++.|.+.|+ +|++. +|+.++.+.+.+
T Consensus 6 KvalITGas~GIG~aia~~la~~G~----~V~~~-~r~~~~~~~~~~ 47 (248)
T d2o23a1 6 LVAVITGGASGLGLATAERLVGQGA----SAVLL-DLPNSGGEAQAK 47 (248)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ECTTSSHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-eCChHHHHHHHH
Confidence 56666 567899999999999999 99999 999888776654
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=94.50 E-value=0.051 Score=42.90 Aligned_cols=81 Identities=7% Similarity=0.052 Sum_probs=50.2
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH-HHHHHHHcCceeccCchhhccCCCEEEEee---CcccHH
Q 024016 12 ILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK-RRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVK 85 (274)
Q Consensus 12 ~IgiI--G~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~-~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~~ 85 (274)
|+.+| |.+.+|.++++.|.+.|+ +|.+. +|+.+ ..+.+.+. ..+ ...+++.+.+ .++.++
T Consensus 8 K~alITGas~GIG~aia~~la~~G~----~Vv~~-~r~~~~~~~~~~~~-------~~~--~g~~~~~~~~Dvt~~~~v~ 73 (261)
T d1geea_ 8 KVVVITGSSTGLGKSMAIRFATEKA----KVVVN-YRSKEDEANSVLEE-------IKK--VGGEAIAVKGDVTVESDVI 73 (261)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC----EEEEE-ESSCHHHHHHHHHH-------HHH--TTCEEEEEECCTTSHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-eCCcHHHHHHHHHH-------HHh--cCCcEEEEEccCCCHHHHH
Confidence 45555 568899999999999999 99998 77653 44444320 000 1123333333 456677
Q ss_pred HHHHHhccccCCCCEEEEecC
Q 024016 86 DVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 86 ~v~~~i~~~l~~~~~vis~~~ 106 (274)
++++++...+.+=.++|+..+
T Consensus 74 ~~~~~~~~~~G~iDiLVnnAG 94 (261)
T d1geea_ 74 NLVQSAIKEFGKLDVMINNAG 94 (261)
T ss_dssp HHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHhCCCCEeeccce
Confidence 888777655544357776543
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=94.49 E-value=0.022 Score=39.60 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=30.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
.++|.|||.|.+|.-+|..|.+.|. +|++. .+.+
T Consensus 30 ~k~vvViGgG~iG~E~A~~l~~~g~----~Vtli-e~~~ 63 (123)
T d1nhpa2 30 VNNVVVIGSGYIGIEAAEAFAKAGK----KVTVI-DILD 63 (123)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESSS
T ss_pred CCEEEEECChHHHHHHHHHhhccce----EEEEE-EecC
Confidence 4689999999999999999999998 99998 6643
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.44 E-value=0.018 Score=44.35 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=29.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
+||.|||+|.-|.+.|..|.++|+ .+|+++ .+++
T Consensus 1 P~V~IIGaG~aGL~aA~~L~~~G~---~~V~vl-E~~~ 34 (347)
T d1b5qa1 1 PRVIVVGAGMSGISAAKRLSEAGI---TDLLIL-EATD 34 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHHTTC---CCEEEE-CSSS
T ss_pred CCEEEECCcHHHHHHHHHHHhCCC---CcEEEE-ECCC
Confidence 479999999999999999999995 169999 7754
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.44 E-value=0.023 Score=39.55 Aligned_cols=32 Identities=19% Similarity=0.128 Sum_probs=30.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
+++.|||.|.+|.-+|..|.+.|. +|+++ .|+
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~G~----~Vtlv-~~~ 54 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSALGS----KTSLM-IRH 54 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSS
T ss_pred CEEEEEcCCccHHHHHHHHhcCCc----EEEEE-eec
Confidence 689999999999999999999998 99999 775
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.38 E-value=0.028 Score=38.92 Aligned_cols=32 Identities=19% Similarity=0.043 Sum_probs=29.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
.++.|||.|.+|.-+|..|.+.|. +|+++ .|+
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~lG~----~Vtii-~~~ 52 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGIGL----DVTVM-VRS 52 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTC----CEEEE-ESS
T ss_pred CeEEEECCCccHHHHHHHHhhcCC----eEEEE-Eec
Confidence 589999999999999999999998 99999 665
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.32 E-value=0.033 Score=44.22 Aligned_cols=81 Identities=12% Similarity=0.155 Sum_probs=53.3
Q ss_pred CCeEEEE--cccHHHHHHHHHHHhC-CCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---Cccc
Q 024016 10 SFILGFI--GAGKMAESIAKGVAKS-GVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQV 83 (274)
Q Consensus 10 ~~~IgiI--G~G~mG~~~a~~L~~~-g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~ 83 (274)
.++|++| |.+-+|.++|+.|.+. |+ +|+++ +|++++.+++.+. + .+ ...++.++.+ ..+.
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~----~Vi~~-~r~~~~~~~~~~~-l------~~--~~~~~~~~~~Dvs~~~s 67 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSG----DVVLT-ARDVTRGQAAVQQ-L------QA--EGLSPRFHQLDIDDLQS 67 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSS----EEEEE-ESSHHHHHHHHHH-H------HH--TTCCCEEEECCTTCHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHHH-H------Hh--cCCcEEEEEEecCCHHH
Confidence 4789999 7799999999999975 87 99999 9999988766541 0 00 0112222233 3456
Q ss_pred HHHHHHHhccccCCCCEEEEe
Q 024016 84 VKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~ 104 (274)
++++++++.....+=.++|+.
T Consensus 68 v~~~~~~~~~~~g~iDiLVnN 88 (275)
T d1wmaa1 68 IRALRDFLRKEYGGLDVLVNN 88 (275)
T ss_dssp HHHHHHHHHHHHSSEEEEEEC
T ss_pred HHHHHHHHHHhcCCcEEEEEc
Confidence 777777776544332466654
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.32 E-value=0.022 Score=44.65 Aligned_cols=40 Identities=15% Similarity=0.255 Sum_probs=34.2
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH
Q 024016 12 ILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (274)
Q Consensus 12 ~IgiI--G~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~ 56 (274)
|+.+| |.+.+|.++++.|.+.|+ +|.+. +|++++++++.+
T Consensus 7 K~alITGas~GIG~aia~~la~~G~----~Vi~~-~r~~~~l~~~~~ 48 (245)
T d2ag5a1 7 KVIILTAAAQGIGQAAALAFAREGA----KVIAT-DINESKLQELEK 48 (245)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHGGGGG
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHHHh
Confidence 55566 779999999999999999 99999 999988776654
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.31 E-value=0.016 Score=45.48 Aligned_cols=35 Identities=20% Similarity=0.232 Sum_probs=30.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK 49 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~ 49 (274)
++|.|||+|.-|..+|..|.+.|. .+|+++ .|+++
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi---~~V~V~-Er~~~ 36 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGI---GKVTLL-ESSSE 36 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC---SEEEEE-ESSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC---CeEEEE-eCCCC
Confidence 589999999999999999999993 178898 77653
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=94.25 E-value=0.053 Score=34.24 Aligned_cols=47 Identities=15% Similarity=0.235 Sum_probs=38.7
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCc
Q 024016 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV 59 (274)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~ 59 (274)
.+..+|-|.|. |.+|....+-+...|+ +|++. .+++++.+.+.+.|+
T Consensus 30 ~~~~~vlI~gasGgVG~~aiQlak~~G~----~Vi~~-t~s~~k~~~~~~lGA 77 (77)
T d1o8ca2 30 PQDGEIVVTGASGGVGSTAVALLHKLGY----QVVAV-SGRESTHEYLKSLGA 77 (77)
T ss_dssp GGGCEEEESSTTSHHHHHHHHHHHHTTC----CEEEE-ESCGGGHHHHHHHTE
T ss_pred cCCCcEEEEeCCCcHHHHHHHHHHHcCC----eEEEE-ECCHHHHHHHHHCCC
Confidence 34568888755 9999999988888898 99988 899999988877663
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.21 E-value=0.054 Score=42.24 Aligned_cols=43 Identities=9% Similarity=0.161 Sum_probs=36.1
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH
Q 024016 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (274)
Q Consensus 9 ~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~ 56 (274)
+.+++-|.| .+.+|.++++.|.+.|+ +|.+. +|++++++++.+
T Consensus 6 ~GK~~lITGas~GIG~aia~~la~~G~----~V~~~-~r~~~~l~~~~~ 49 (244)
T d1pr9a_ 6 AGRRVLVTGAGKGIGRGTVQALHATGA----RVVAV-SRTQADLDSLVR 49 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC----EEEEE-ECCHHHHHHHHH
Confidence 445666665 57899999999999999 99999 999998887765
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=94.18 E-value=0.033 Score=43.00 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=32.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK 49 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~ 49 (274)
..++|.|||.|.-|...|..|.+.|+ +|+++ +++.+
T Consensus 48 ~~k~VvIIGaGpAGl~aA~~l~~~G~----~v~l~-E~~~~ 83 (233)
T d1djqa3 48 NKDSVLIVGAGPSGSEAARVLMESGY----TVHLT-DTAEK 83 (233)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSSS
T ss_pred CCceEEEEcccHHHHHHHHHHHHhcc----ceeeE-eeccc
Confidence 45799999999999999999999999 99999 87653
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=94.16 E-value=0.075 Score=38.96 Aligned_cols=46 Identities=11% Similarity=0.065 Sum_probs=38.1
Q ss_pred CCeEEEE-cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce
Q 024016 10 SFILGFI-GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60 (274)
Q Consensus 10 ~~~IgiI-G~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~ 60 (274)
..+|.|+ |.|.+|...++-....|. +|++. ++++++.+.+++.|+.
T Consensus 29 g~~Vlv~ga~g~vG~~~iqlak~~Ga----~Vi~~-~~s~~k~~~~~~lGa~ 75 (179)
T d1qora2 29 DEQFLFHAAAGGVGLIACQWAKALGA----KLIGT-VGTAQKAQSALKAGAW 75 (179)
T ss_dssp TCEEEESSTTBHHHHHHHHHHHHHTC----EEEEE-ESSHHHHHHHHHHTCS
T ss_pred CCEEEEEccccccchHHHHHHHHhCC----eEeec-ccchHHHHHHHhcCCe
Confidence 4689999 556699988888788888 99999 9999999888887754
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.15 E-value=0.027 Score=45.52 Aligned_cols=64 Identities=11% Similarity=0.115 Sum_probs=40.8
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCC-HHHHHHHHH----cCceec--cCchhhccCCCEEEEe
Q 024016 10 SFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSN-LKRRDAFES----IGVKVL--SDNNAVVEYSDVVVFS 78 (274)
Q Consensus 10 ~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~-~~~~~~l~~----~g~~~~--~~~~~~~~~aDiIil~ 78 (274)
++||.|.| +|-+|+.++..|++.|+ +|+++ ++. ..+.+.+.. ..+.+. +....+..++|+||=+
T Consensus 1 kKKIlVtG~sGfiG~~lv~~L~~~g~----~V~~~-d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~Vihl 72 (312)
T d2b69a1 1 RKRILITGGAGFVGSHLTDKLMMDGH----EVTVV-DNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHL 72 (312)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCCCCSEEEEC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcC----EEEEE-eCCCcCCHHHHHHhcCCCceEEEehHHHHHHHcCCCEEEEC
Confidence 36899995 59999999999999999 99988 652 222222221 122222 1223344579998843
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=94.14 E-value=0.015 Score=45.86 Aligned_cols=33 Identities=18% Similarity=0.291 Sum_probs=30.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
|||.|.|+ |-+|+.+++.|.+.|| +|+.. +|+.
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~----~Vi~~-~r~~ 35 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNV----EVIPT-DVQD 35 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSE----EEEEE-CTTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC----EEEEe-echh
Confidence 68999986 9999999999999999 99999 8864
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=94.07 E-value=0.026 Score=45.19 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=29.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
.+|.|||+|.+|.+.|..|.+.|+ .+|+++ +|++
T Consensus 2 ~dViIIGaGi~G~s~A~~La~~G~---~~V~li-E~~~ 35 (305)
T d1pj5a2 2 PRIVIIGAGIVGTNLADELVTRGW---NNITVL-DQGP 35 (305)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTC---CCEEEE-CSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHcCC---CcEEEE-eCCC
Confidence 479999999999999999999995 169999 8863
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=94.01 E-value=0.023 Score=45.95 Aligned_cols=37 Identities=14% Similarity=0.056 Sum_probs=32.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK 49 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~ 49 (274)
.+...|.|||+|.-|.++|..|.+.|+ ++.++ +++++
T Consensus 5 ~~~~dV~IIGAG~sGl~~a~~L~~~G~----~v~i~-Ek~~~ 41 (298)
T d1w4xa1 5 PEEVDVLVVGAGFSGLYALYRLRELGR----SVHVI-ETAGD 41 (298)
T ss_dssp CSEEEEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSSS
T ss_pred CCCCCEEEECccHHHHHHHHHHHhCCC----CEEEE-EcCCC
Confidence 345689999999999999999999999 99999 88754
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.97 E-value=0.083 Score=41.39 Aligned_cols=70 Identities=16% Similarity=0.206 Sum_probs=47.3
Q ss_pred CeEEEE-cc-cHHHHHHHHHHHh---CCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhccCCCEEEEee---Cc
Q 024016 11 FILGFI-GA-GKMAESIAKGVAK---SGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVEYSDVVVFSV---KP 81 (274)
Q Consensus 11 ~~IgiI-G~-G~mG~~~a~~L~~---~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~aDiIil~v---~~ 81 (274)
-||+|| |+ +-+|.++|+.|.+ +|+ +|++. +|++++++++.+ .. .--.+.++.++.+ .+
T Consensus 6 gKvalITGas~GIG~aiA~~lA~~~~~G~----~Vv~~-~r~~~~l~~~~~~l~--------~~~~~~~~~~~~~Dvs~~ 72 (259)
T d1oaaa_ 6 CAVCVLTGASRGFGRALAPQLARLLSPGS----VMLVS-ARSESMLRQLKEELG--------AQQPDLKVVLAAADLGTE 72 (259)
T ss_dssp SEEEEESSCSSHHHHHHHHHHHTTBCTTC----EEEEE-ESCHHHHHHHHHHHH--------HHCTTSEEEEEECCTTSH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHhcccCCC----EEEEE-ECCHHHHHHHHHHHH--------hhcCCceEEEEEccCCCH
Confidence 478888 44 6899999999975 788 99999 999998877654 11 0011223444443 35
Q ss_pred ccHHHHHHHhcc
Q 024016 82 QVVKDVAMQIRP 93 (274)
Q Consensus 82 ~~~~~v~~~i~~ 93 (274)
+.++.+++.+..
T Consensus 73 ~~v~~l~~~~~~ 84 (259)
T d1oaaa_ 73 AGVQRLLSAVRE 84 (259)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 567777776654
|
| >d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Escherichia coli [TaxId: 562]
Probab=93.94 E-value=0.28 Score=33.32 Aligned_cols=96 Identities=16% Similarity=0.233 Sum_probs=68.5
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhcc--CCCEEEEeeCcccH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVE--YSDVVVFSVKPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~--~aDiIil~v~~~~~ 84 (274)
+..||.+-|. |.-|+..++.+++.|- +|..- -+|.+.- .. .|+.++++..|+.+ ++|.=++-|||...
T Consensus 5 k~trVlvQGiTG~~G~~ht~~m~~yGT----~vVaG--VtPgkgG--~~~~giPVf~sV~eAv~~~~~~~SvIfVPp~~a 76 (119)
T d2nu7a1 5 KNTKVICQGFTGSQGTFHSEQAIAYGT----KMVGG--VTPGKGG--TTHLGLPVFNTVREAVAATGATASVIYVPAPFC 76 (119)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTC----EEEEE--ECTTCTT--EEETTEEEESSHHHHHHHHCCCEEEECCCGGGH
T ss_pred CCCcEEEEcCCCcHHHHHHHHHHHhCC----ceEEE--EccCCCC--cccCCCchhhHHHHHHHHhCCCeEEEeccHHHH
Confidence 3468999998 9999999999999986 66533 2333210 11 57888888888765 68998999987765
Q ss_pred HH-HHHHhccccCCCCEEEEecCCCCHHHHHH
Q 024016 85 KD-VAMQIRPLLSRKKLLVSVAAGVKLKDLQE 115 (274)
Q Consensus 85 ~~-v~~~i~~~l~~~~~vis~~~g~~~~~l~~ 115 (274)
.+ +++.+...+ ++++.++-+++..++.+
T Consensus 77 ~dA~~EAi~agI---~~iV~ITEgIP~~D~~~ 105 (119)
T d2nu7a1 77 KDSILEAIDAGI---KLIITITEGIPTLDMLT 105 (119)
T ss_dssp HHHHHHHHHTTC---SEEEECCCCCCHHHHHH
T ss_pred HHHHHHHHHCCC---CEEEEecCCCCHHHHHH
Confidence 54 445555444 57777889999765543
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.94 E-value=0.036 Score=44.29 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=30.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
+..||.|||+|.=|.+-|..|.++|+ +|+|+ .++
T Consensus 4 ~~~kViVIGaG~aGL~aA~~L~~~G~----~V~Vl-Ea~ 37 (449)
T d2dw4a2 4 KTGKVIIIGSGVSGLAAARQLQSFGM----DVTLL-EAR 37 (449)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTC----EEEEE-CSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCC----CEEEE-eCC
Confidence 45689999999999999999999999 99999 654
|
| >d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Thermus thermophilus [TaxId: 274]
Probab=93.93 E-value=0.18 Score=34.46 Aligned_cols=95 Identities=17% Similarity=0.209 Sum_probs=67.9
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceeccCchhhcc--CCCEEEEeeCcccHH
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVLSDNNAVVE--YSDVVVFSVKPQVVK 85 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~~~~~~~~~--~aDiIil~v~~~~~~ 85 (274)
..||-+-|. |..|+.-++..++.|- +|..- -+|.+-= .. .|+.++++..|+.+ ++|.=++.|||....
T Consensus 7 ~trVivQGiTG~~G~~ht~~m~~yGT----~iVaG--VtPgkgG--~~~~giPVf~tV~eAv~~~~~d~SvIfVPp~~a~ 78 (121)
T d1oi7a1 7 ETRVLVQGITGREGQFHTKQMLTYGT----KIVAG--VTPGKGG--MEVLGVPVYDTVKEAVAHHEVDASIIFVPAPAAA 78 (121)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTC----EEEEE--ECTTCTT--CEETTEEEESSHHHHHHHSCCSEEEECCCHHHHH
T ss_pred CCcEEEEcCCCcHHHHHHHHHHHhCC----ceEee--eecCCCC--cEEECCchHhhHHHHHHhcCCeEEEEeeCHHHHH
Confidence 458999997 9999999999999886 66543 2333210 01 47788888888765 689999999987655
Q ss_pred H-HHHHhccccCCCCEEEEecCCCCHHHHHH
Q 024016 86 D-VAMQIRPLLSRKKLLVSVAAGVKLKDLQE 115 (274)
Q Consensus 86 ~-v~~~i~~~l~~~~~vis~~~g~~~~~l~~ 115 (274)
+ +++.+...+ ++++.++-+++..++.+
T Consensus 79 dAi~EAi~agI---~liv~ITEgVPv~Dm~~ 106 (121)
T d1oi7a1 79 DAALEAAHAGI---PLIVLITEGIPTLDMVR 106 (121)
T ss_dssp HHHHHHHHTTC---SEEEECCSCCCHHHHHH
T ss_pred HHHHHHHhCCC---cEEEEecCCCCHHHHHH
Confidence 4 445554433 57788889999765543
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=93.92 E-value=0.067 Score=41.97 Aligned_cols=94 Identities=12% Similarity=0.157 Sum_probs=55.2
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC----ccc
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK----PQV 83 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~----~~~ 83 (274)
+.++|-|.|. +-+|.++|+.|.+.|. +|++. .|+.++.+.+.+.. ....+..+.+.+.. .+.
T Consensus 4 ~gK~vlITGgs~GIG~~~A~~la~~G~----~vii~-~r~~~~~~~~~~~~--------~~~~~~~~~~~~~d~~~~~~~ 70 (254)
T d1sbya1 4 TNKNVIFVAALGGIGLDTSRELVKRNL----KNFVI-LDRVENPTALAELK--------AINPKVNITFHTYDVTVPVAE 70 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTCC----SEEEE-EESSCCHHHHHHHH--------HHCTTSEEEEEECCTTSCHHH
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCC----EEEEE-ECCcccHHHHHHHH--------hhCCCCCEEEEEeecCCCHHH
Confidence 3455666655 5799999999999998 88777 56555544443211 11122334444432 234
Q ss_pred HHHHHHHhccccCCCCEEEEecCCCCHHHHHH
Q 024016 84 VKDVAMQIRPLLSRKKLLVSVAAGVKLKDLQE 115 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~~~g~~~~~l~~ 115 (274)
++++++.+...+.+=.++|+..+..+.+.+++
T Consensus 71 ~~~~~~~~~~~~g~iDilvnnAG~~~~~~~~~ 102 (254)
T d1sbya1 71 SKKLLKKIFDQLKTVDILINGAGILDDHQIER 102 (254)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCTTCHHH
T ss_pred HHHHHHHHHHHcCCCCEEEeCCCCCCHHHHHH
Confidence 67777777665544347887766555444433
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.91 E-value=0.15 Score=40.66 Aligned_cols=96 Identities=11% Similarity=0.144 Sum_probs=54.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeC----------CCHHHHHHHHH-cCce-----eccCchhhc-c
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVH----------SNLKRRDAFES-IGVK-----VLSDNNAVV-E 70 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~----------r~~~~~~~l~~-~g~~-----~~~~~~~~~-~ 70 (274)
.+.++|.|-|.|++|...|+.|.+.|. .|+.+.+ -+.+.+.++.. .|.. ..-++.++. .
T Consensus 34 L~gktvaIqGfGnVG~~~A~~L~e~Ga----kvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (293)
T d1hwxa1 34 FGDKTFAVQGFGNVGLHSMRYLHRFGA----KCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEV 109 (293)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTC----EEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCBCCSCGGGC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEEEccchhhccccccchHHHHHHHHHcCCeecccccccCCcccccC
Confidence 456799999999999999999999997 6654312 23344444443 1110 001122333 4
Q ss_pred CCCEEEEeeCcccHH-HHHHHhccccCCCCEEEEecCC-CCHHH
Q 024016 71 YSDVVVFSVKPQVVK-DVAMQIRPLLSRKKLLVSVAAG-VKLKD 112 (274)
Q Consensus 71 ~aDiIil~v~~~~~~-~v~~~i~~~l~~~~~vis~~~g-~~~~~ 112 (274)
+|||++-|--...+. +.... ++ -++|+--.++ ++++.
T Consensus 110 ~~DIliPaA~~~~I~~~~a~~----l~-ak~I~EgAN~P~t~eA 148 (293)
T d1hwxa1 110 DCDILIPAASEKQLTKSNAPR----VK-AKIIAEGANGPTTPQA 148 (293)
T ss_dssp CCSEEEECSSSSCBCTTTGGG----CC-CSEEECCSSSCBCHHH
T ss_pred CccEEeeccccccccHHHHHH----Hh-hCEEeccCCCCCCcch
Confidence 899999986544332 22222 32 2466655443 44444
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.89 E-value=0.044 Score=37.35 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=30.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
..++.|||.|..|.-+|..|.+.|. +|+++ .|.+
T Consensus 21 p~~vvIiGgG~~G~E~A~~l~~~g~----~Vtlv-e~~~ 54 (115)
T d1lvla2 21 PQHLVVVGGGYIGLELGIAYRKLGA----QVSVV-EARE 54 (115)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTC----EEEEE-CSSS
T ss_pred CCeEEEECCCHHHHHHHHHHhhccc----ceEEE-eeec
Confidence 3689999999999999999999998 99999 7653
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.86 E-value=0.023 Score=45.81 Aligned_cols=33 Identities=12% Similarity=0.184 Sum_probs=29.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
..|.|||+|.-|.+.|..|.+.|+ +|.++ .++.
T Consensus 2 ~dv~IIGaG~sGl~~A~~L~~~g~----~V~ii-Ek~~ 34 (298)
T d1i8ta1 2 YDYIIVGSGLFGAVCANELKKLNK----KVLVI-EKRN 34 (298)
T ss_dssp EEEEEECCSHHHHHHHHHHGGGTC----CEEEE-CSSS
T ss_pred ccEEEECCcHHHHHHHHHHHhCCC----cEEEE-ECCC
Confidence 479999999999999999999999 99999 7653
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=93.84 E-value=0.23 Score=38.38 Aligned_cols=81 Identities=14% Similarity=0.139 Sum_probs=52.5
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---CcccHHH
Q 024016 12 ILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQVVKD 86 (274)
Q Consensus 12 ~IgiI--G~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~~~~ 86 (274)
+|.+| |.+.+|.++++.|.++|+ +|.+.+.|+++..+++.+. ..+ ...+++++.+ .++++++
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga----~V~i~~~~~~~~~~~~~~~-------~~~--~g~~~~~~~~Dv~~~~~v~~ 68 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGC----KVLVNYARSAKAAEEVSKQ-------IEA--YGGQAITFGGDVSKEADVEA 68 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC----EEEEEESSCHHHHHHHHHH-------HHH--HTCEEEEEECCTTSHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC----EEEEEeCCCHHHHHHHHHH-------HHH--cCCcEEEEeCCCCCHHHHHH
Confidence 36666 668899999999999999 9987427787777665531 000 0123333333 3566888
Q ss_pred HHHHhccccCCCCEEEEec
Q 024016 87 VAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 87 v~~~i~~~l~~~~~vis~~ 105 (274)
+++++...+.+=.++|+..
T Consensus 69 ~~~~~~~~~g~iDiLVnnA 87 (244)
T d1edoa_ 69 MMKTAIDAWGTIDVVVNNA 87 (244)
T ss_dssp HHHHHHHHSSCCSEEEECC
T ss_pred HHHHHHHHcCCCCcccccc
Confidence 8887776554435777653
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=93.82 E-value=0.13 Score=37.22 Aligned_cols=66 Identities=20% Similarity=0.232 Sum_probs=48.3
Q ss_pred CCCeEEEEcc--cHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-----HHHHH----HHHcC--ceeccCchhhccCCCEE
Q 024016 9 ESFILGFIGA--GKMAESIAKGVAKSGVLPPDRICTAVHSNL-----KRRDA----FESIG--VKVLSDNNAVVEYSDVV 75 (274)
Q Consensus 9 ~~~~IgiIG~--G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-----~~~~~----l~~~g--~~~~~~~~~~~~~aDiI 75 (274)
+..||+|||= .++-.++...+.+-|. +++++ .... +-.+. ..+.+ +...+++.++++++|+|
T Consensus 2 ~g~ki~~vGD~~nnV~~Sli~~~~~~g~----~i~~~-~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDvi 76 (161)
T d1vlva2 2 KGVKVVFMGDTRNNVATSLMIACAKMGM----NFVAC-GPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVV 76 (161)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHTTC----EEEEE-SCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEE
T ss_pred CCCEEEEEcCCccHHHHHHHHHHHHcCC----EEEEe-cchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhhe
Confidence 4579999994 5899999999999998 99888 5532 11111 12233 45678889999999999
Q ss_pred EEee
Q 024016 76 VFSV 79 (274)
Q Consensus 76 il~v 79 (274)
..-.
T Consensus 77 yt~~ 80 (161)
T d1vlva2 77 YTDV 80 (161)
T ss_dssp EECC
T ss_pred eccc
Confidence 9755
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=93.79 E-value=0.032 Score=38.39 Aligned_cols=32 Identities=25% Similarity=0.314 Sum_probs=29.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
.+|.|||.|.+|.=+|..|.+.|. +|++. .|+
T Consensus 23 ~~i~IiG~G~ig~E~A~~l~~~G~----~Vtiv-~~~ 54 (119)
T d3lada2 23 GKLGVIGAGVIGLELGSVWARLGA----EVTVL-EAM 54 (119)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTC----EEEEE-ESS
T ss_pred CeEEEECCChHHHHHHHHHHHcCC----ceEEE-Eee
Confidence 689999999999999999999998 99988 543
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=93.75 E-value=0.032 Score=43.62 Aligned_cols=35 Identities=14% Similarity=0.202 Sum_probs=30.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
..||.|||+|.+|+.++..|...|. .+++++ |.+.
T Consensus 30 ~~~VliiG~GglGs~va~~La~~Gv---g~i~lv-D~D~ 64 (247)
T d1jw9b_ 30 DSRVLIVGLGGLGCAASQYLASAGV---GNLTLL-DFDT 64 (247)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTC---SEEEEE-CCCB
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCC---CeEEEE-CCcc
Confidence 3689999999999999999999997 378888 7654
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.66 E-value=0.049 Score=42.45 Aligned_cols=43 Identities=12% Similarity=0.149 Sum_probs=35.8
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~ 56 (274)
+.+++-|.|. +-+|.++++.|.+.|+ +|.+. +|++++++++.+
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~Ga----~V~~~-~r~~~~l~~~~~ 47 (242)
T d1cyda_ 4 SGLRALVTGAGKGIGRDTVKALHASGA----KVVAV-TRTNSDLVSLAK 47 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHH
Confidence 3456666665 6799999999999999 99999 999998887765
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=93.58 E-value=0.071 Score=41.70 Aligned_cols=85 Identities=12% Similarity=0.174 Sum_probs=51.1
Q ss_pred CCCCCeEEEEccc---HHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEe---eC
Q 024016 7 PAESFILGFIGAG---KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFS---VK 80 (274)
Q Consensus 7 ~~~~~~IgiIG~G---~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~---v~ 80 (274)
.++.+++-|.|++ -+|.++++.|.+.|+ +|.+. +|+++..+...+. .+... +..++. ..
T Consensus 5 ~L~gK~alITGas~~~GIG~aiA~~la~~Ga----~V~i~-~~~~~~~~~~~~~--------~~~~~--~~~~~~~D~~~ 69 (256)
T d1ulua_ 5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGA----EVALS-YQAERLRPEAEKL--------AEALG--GALLFRADVTQ 69 (256)
T ss_dssp CCTTCEEEEESCCCSSSHHHHHHHHHHHTTC----EEEEE-ESSGGGHHHHHHH--------HHHTT--CCEEEECCTTC
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCCC----EEEEE-eCcHHHHHHHHHh--------hhccC--cccccccccCC
Confidence 3456667777864 499999999999999 99888 8886544433221 00000 111222 23
Q ss_pred cccHHHHHHHhccccCCCCEEEEecC
Q 024016 81 PQVVKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 81 ~~~~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
+++++.+++.+...+.+=.++|+..+
T Consensus 70 ~~~v~~~~~~~~~~~g~iDilVnnag 95 (256)
T d1ulua_ 70 DEELDALFAGVKEAFGGLDYLVHAIA 95 (256)
T ss_dssp HHHHHHHHHHHHHHHSSEEEEEECCC
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccc
Confidence 56677777776655433346676543
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=93.45 E-value=0.046 Score=37.46 Aligned_cols=34 Identities=15% Similarity=0.048 Sum_probs=30.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
.++|.|||.|.+|.-+|..|.+.|. +|+++ .|.+
T Consensus 22 ~~~vvVvGgG~ig~E~A~~l~~~g~----~vt~i-~~~~ 55 (121)
T d1mo9a2 22 GSTVVVVGGSKTAVEYGCFFNATGR----RTVML-VRTE 55 (121)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CSSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhcch----hheEe-eccc
Confidence 4689999999999999999999998 99999 7754
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=93.43 E-value=0.026 Score=44.12 Aligned_cols=34 Identities=15% Similarity=0.085 Sum_probs=28.4
Q ss_pred CeEEEE--cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH
Q 024016 11 FILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK 49 (274)
Q Consensus 11 ~~IgiI--G~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~ 49 (274)
|||.+| |.+.+|.++|+.|.+.|+ +|++. +|+.+
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~Ga----~V~~~-~~~~~ 36 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAGH----QIVGI-DIRDA 36 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESSSS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECChH
Confidence 577777 457899999999999999 99988 77653
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=93.40 E-value=0.04 Score=40.02 Aligned_cols=36 Identities=14% Similarity=0.101 Sum_probs=30.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
.+||.|||.|..|..+|..|.+.+. ..+|+++ ++++
T Consensus 2 gkrivIvGgG~~G~e~A~~l~~~~~--~~~Vtli-e~~~ 37 (186)
T d1fcda1 2 GRKVVVVGGGTGGATAAKYIKLADP--SIEVTLI-EPNT 37 (186)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCT--TSEEEEE-CSCS
T ss_pred CCcEEEECccHHHHHHHHHHHHcCC--CCcEEEE-ECCC
Confidence 3699999999999999999999874 2378888 7765
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=93.34 E-value=0.098 Score=41.13 Aligned_cols=84 Identities=15% Similarity=0.134 Sum_probs=48.9
Q ss_pred CCCeEEEEcc-c--HHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee-CcccH
Q 024016 9 ESFILGFIGA-G--KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV-KPQVV 84 (274)
Q Consensus 9 ~~~~IgiIG~-G--~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v-~~~~~ 84 (274)
+.+++-|.|. | -||.++|+.|.+.|+ +|++. +|+++..+.+.+. .+....+.++..-+ .+..+
T Consensus 4 ~gK~alITGaag~~GIG~AiA~~la~~Ga----~V~i~-~r~~~~~~~~~~l--------~~~~~~~~~~~~d~~~~~~~ 70 (274)
T d2pd4a1 4 KGKKGLIVGVANNKSIAYGIAQSCFNQGA----TLAFT-YLNESLEKRVRPI--------AQELNSPYVYELDVSKEEHF 70 (274)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHTTTC----EEEEE-ESSTTTHHHHHHH--------HHHTTCCCEEECCTTCHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHCCC----EEEEE-eCCHHHHHHHHHH--------HhhCCceeEeeecccchhhH
Confidence 5567778886 5 499999999999999 99999 8886433222220 01111222222222 34456
Q ss_pred HHHHHHhccccCCCCEEEEec
Q 024016 85 KDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 85 ~~v~~~i~~~l~~~~~vis~~ 105 (274)
.+++.++...+.+=.++|...
T Consensus 71 ~~~~~~~~~~~g~id~lV~na 91 (274)
T d2pd4a1 71 KSLYNSVKKDLGSLDFIVHSV 91 (274)
T ss_dssp HHHHHHHHHHTSCEEEEEECC
T ss_pred HHHHHHHHHHcCCCCeEEeec
Confidence 666666655544434555443
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=93.31 E-value=0.031 Score=41.84 Aligned_cols=35 Identities=6% Similarity=-0.084 Sum_probs=28.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
|||.|||.|..|..+|..|.+.+. ..+|+++ +|++
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~~--~~~V~v~-~~~~ 35 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLHP--DAEIQWY-EKGD 35 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCT--TSEEEEE-ESSS
T ss_pred CEEEEECCcHHHHHHHHHHHhcCC--CCeEEEE-eCCC
Confidence 799999999999999999988643 2378888 7653
|
| >d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Thermotoga maritima [TaxId: 2336]
Probab=93.25 E-value=0.032 Score=42.04 Aligned_cols=40 Identities=13% Similarity=0.277 Sum_probs=31.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD 52 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~ 52 (274)
+||-|||.|--|..++.+|.+.|. +..+.... |.+.+.++
T Consensus 1 ~kI~viGvGGaG~n~v~~l~~~~~-~~v~~iai-nTD~~~L~ 40 (194)
T d1w5fa1 1 LKIKVIGVGGAGNNAINRMIEIGI-HGVEFVAV-NTDLQVLE 40 (194)
T ss_dssp CCEEEEEEHHHHHHHHHHHHHHCC-TTEEEEEE-ESCHHHHH
T ss_pred CeEEEEEeCchHHHHHHHHHHcCC-CceEEEEE-cCCHHHHh
Confidence 589999999999999999999885 33355666 77765544
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=93.21 E-value=0.064 Score=41.46 Aligned_cols=41 Identities=10% Similarity=0.096 Sum_probs=33.7
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHH
Q 024016 8 AESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDA 53 (274)
Q Consensus 8 ~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~ 53 (274)
++.+++-|.|. +-||.++++.|.+.|+ +|.+. +|+++.+++
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~Ga----~V~~~-~r~~~~l~~ 43 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEGA----EVTIC-ARNEELLKR 43 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC----EEEEE-ESCHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHh
Confidence 45667777765 7799999999999999 99999 999876543
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.20 E-value=0.048 Score=41.42 Aligned_cols=34 Identities=9% Similarity=0.136 Sum_probs=30.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
..-|.|||+|.-|...|..|.++|+ +|.|+ ++++
T Consensus 5 ~yDviViGaG~~Gl~~A~~La~~G~----~V~vl-E~~~ 38 (297)
T d2bcgg1 5 DYDVIVLGTGITECILSGLLSVDGK----KVLHI-DKQD 38 (297)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSS
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCC----CEEEE-cCCC
Confidence 3458999999999999999999999 99999 8764
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=93.19 E-value=0.025 Score=46.20 Aligned_cols=66 Identities=14% Similarity=0.105 Sum_probs=44.4
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCceec----cCc---h-hhccCCCEEEEeeC
Q 024016 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVKVL----SDN---N-AVVEYSDVVVFSVK 80 (274)
Q Consensus 11 ~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~~~----~~~---~-~~~~~aDiIil~v~ 80 (274)
|||-|.| +|-+|+.+++.|++.|+ .+|++. ++...+...+.+ .+++.. ++. . ...+++|+||-+.-
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~---~~V~~l-d~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~ 76 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDH---YEVYGL-DIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVA 76 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTT---CEEEEE-ESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC---CEEEEE-eCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCccccccc
Confidence 6899995 59999999999999995 278888 776555444443 333321 121 1 24567999998663
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=92.97 E-value=0.048 Score=42.98 Aligned_cols=31 Identities=26% Similarity=0.306 Sum_probs=28.5
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
-|.|||.|..|.+.|..|.++|+ +|+++ ++.
T Consensus 5 DvvIIGaGi~Gls~A~~La~~G~----~V~vi-E~~ 35 (281)
T d2gf3a1 5 DVIVVGAGSMGMAAGYQLAKQGV----KTLLV-DAF 35 (281)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCC----cEEEE-eCC
Confidence 38899999999999999999999 99999 774
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.97 E-value=0.23 Score=38.36 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=23.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHh-CCC
Q 024016 8 AESFILGFIGAGKMAESIAKGVAK-SGV 34 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~-~g~ 34 (274)
.+.++|.|-|.|++|..+++.|.+ .|.
T Consensus 30 l~g~~v~IqGfGnVG~~~a~~L~~~~G~ 57 (239)
T d1gtma1 30 LKGKTIAIQGYGNAGYYLAKIMSEDFGM 57 (239)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTCC
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHhcCc
Confidence 466899999999999999999875 476
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=92.93 E-value=0.038 Score=45.19 Aligned_cols=38 Identities=8% Similarity=-0.052 Sum_probs=33.0
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH
Q 024016 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR 51 (274)
Q Consensus 9 ~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~ 51 (274)
+.+||-|.| +|-+|+.+++.|++.|+ +|.++ +|+..+.
T Consensus 7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~----~V~~~-~r~~~~~ 45 (356)
T d1rkxa_ 7 QGKRVFVTGHTGFKGGWLSLWLQTMGA----TVKGY-SLTAPTV 45 (356)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ESSCSSS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-ECCCCcc
Confidence 458999997 69999999999999999 99999 8876543
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.77 E-value=0.023 Score=43.58 Aligned_cols=37 Identities=14% Similarity=0.048 Sum_probs=30.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC---CCCCcEEEEeCCCH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGV---LPPDRICTAVHSNL 48 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~---~~~~~v~v~~~r~~ 48 (274)
.||+|||+|.-|.+-|..|.++|| ....+|++| ++.+
T Consensus 3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~-E~~~ 42 (239)
T d1lqta2 3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDML-EMLP 42 (239)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEE-ESSS
T ss_pred cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEE-ecCC
Confidence 599999999999999999999984 011269999 7765
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.74 E-value=0.065 Score=36.97 Aligned_cols=33 Identities=18% Similarity=0.162 Sum_probs=30.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
.++.|||.|.+|.=+|..|.+.|. +|++. .|++
T Consensus 26 ~~~viiG~G~iglE~A~~~~~~G~----~Vtvi-~~~~ 58 (123)
T d1dxla2 26 KKLVVIGAGYIGLEMGSVWGRIGS----EVTVV-EFAS 58 (123)
T ss_dssp SEEEESCCSHHHHHHHHHHHHHTC----EEEEE-CSSS
T ss_pred CeEEEEccchHHHHHHHHHHhcCC----eEEEE-EEcc
Confidence 589999999999999999999998 99999 7754
|
| >d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.72 E-value=0.34 Score=33.41 Aligned_cols=95 Identities=16% Similarity=0.222 Sum_probs=68.3
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhcc--CCCEEEEeeCcccHHH
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVE--YSDVVVFSVKPQVVKD 86 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~aDiIil~v~~~~~~~ 86 (274)
..||-+-|. |.-|+.-++.+++.|- +|..-++....- +. -.|+.++++..|+.+ ++|.=++.|||....+
T Consensus 15 ~TrVivQGiTG~~G~~ht~~m~~YGT----~iVaGVtPgKgG-~~--~~giPVf~tV~eA~~~~~~daSvIfVPp~~a~d 87 (130)
T d1euca1 15 NTKVICQGFTGKQGTFHSQQALEYGT----NLVGGTTPGKGG-KT--HLGLPVFNTVKEAKEQTGATASVIYVPPPFAAA 87 (130)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTC----EEEEEECTTCTT-CE--ETTEEEESSHHHHHHHHCCCEEEECCCHHHHHH
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHhcC----CeEEeeccCCCC-cc--ccCccchhhHHHHHHhcCCcEEEEecCHHHHHH
Confidence 468999998 9999999999999886 665442332211 00 157888888888876 7999999999876554
Q ss_pred -HHHHhccccCCCCEEEEecCCCCHHHHH
Q 024016 87 -VAMQIRPLLSRKKLLVSVAAGVKLKDLQ 114 (274)
Q Consensus 87 -v~~~i~~~l~~~~~vis~~~g~~~~~l~ 114 (274)
+++.+...+ +++|.++-+++..++.
T Consensus 88 Ai~EAi~agI---~liV~ITEgIPv~Dm~ 113 (130)
T d1euca1 88 AINEAIDAEV---PLVVCITEGIPQQDMV 113 (130)
T ss_dssp HHHHHHHTTC---SEEEECCCCCCHHHHH
T ss_pred HHHHHHhCCC---CEEEEecCCCCHHHHH
Confidence 445555444 5778888999976543
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=92.68 E-value=0.13 Score=40.54 Aligned_cols=91 Identities=19% Similarity=0.197 Sum_probs=52.2
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-----cCc---eeccCchhh-ccCCCEEEEee-
Q 024016 12 ILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-----IGV---KVLSDNNAV-VEYSDVVVFSV- 79 (274)
Q Consensus 12 ~IgiI--G~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-----~g~---~~~~~~~~~-~~~aDiIil~v- 79 (274)
=|++| |.+.+|.++|+.|.++|+ +|.+.+.|+.+..+.+.+ .+. .+..|.... ....+......
T Consensus 3 pVAlITGas~GIG~aiA~~la~~Ga----~V~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d 78 (284)
T d1e7wa_ 3 PVALVTGAAKRLGRSIAEGLHAEGY----AVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAP 78 (284)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC----EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC----EEEEEeCCCHHHHHHHHHHHHhhcCCceEEEEeeccccccccccccccccc
Confidence 37788 557899999999999999 998753667776666554 121 111121110 11223333332
Q ss_pred --CcccHHHHHHHhccccCCCCEEEEecC
Q 024016 80 --KPQVVKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 80 --~~~~~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
..+.++++++++...+.+=.++|+..+
T Consensus 79 v~~~~~v~~~~~~~~~~~G~iDiLVnnAG 107 (284)
T d1e7wa_ 79 VTLFTRCAELVAACYTHWGRCDVLVNNAS 107 (284)
T ss_dssp BCHHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEecCC
Confidence 245577777777655544357776643
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=92.59 E-value=0.12 Score=40.53 Aligned_cols=32 Identities=25% Similarity=0.282 Sum_probs=27.4
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEE
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAKSGVLPPDRICT 42 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v 42 (274)
..+.+||.|-|.|++|...++.|.+.|. .|+.
T Consensus 33 ~l~g~~v~IQGfGnVG~~~a~~L~e~Ga----kvva 64 (255)
T d1bgva1 33 TLVGKTVALAGFGNVAWGAAKKLAELGA----KAVT 64 (255)
T ss_dssp CSTTCEEEECCSSHHHHHHHHHHHHHTC----EEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC----eEEE
Confidence 3456799999999999999999999998 6653
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=92.53 E-value=0.15 Score=37.19 Aligned_cols=42 Identities=14% Similarity=0.235 Sum_probs=32.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC-CHHHHHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFES 56 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r-~~~~~~~l~~ 56 (274)
|||||=|.|++|+.+.+.|.+.++ +|...++. +.+....|.+
T Consensus 1 ikigINGfGRIGR~~~R~l~~~~i----~iv~INd~~~~~~~ayLl~ 43 (168)
T d2g82a1 1 MKVGINGFGRIGRQVFRILHSRGV----EVALINDLTDNKTLAHLLK 43 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTC----CEEEEECSSCHHHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHhcCCC----EEEEECCCcchhhhhheee
Confidence 689999999999999999998887 88887544 2344445554
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.52 E-value=0.02 Score=43.43 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=27.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
+||.|+|+ |.+|+.+++.|+++|+. ..|... .|++
T Consensus 3 KkIlItGatG~iG~~lv~~L~~~~~~--~~v~~~-~r~~ 38 (212)
T d2a35a1 3 KRVLLAGATGLTGEHLLDRILSEPTL--AKVIAP-ARKA 38 (212)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHCTTC--CEEECC-BSSC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCe--EEEEEE-eCCc
Confidence 69999977 99999999999999972 145555 5543
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.50 E-value=0.034 Score=43.28 Aligned_cols=76 Identities=18% Similarity=0.154 Sum_probs=48.6
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHH
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDV 87 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v 87 (274)
+.+++-|.|+ +.||.++++.|.+.|+ +|.+. +|+.+..+.+ .. -.+|+ +.+++++++
T Consensus 6 ~gK~~lITGas~GIG~aia~~la~~Ga----~V~~~-~r~~~~~~~~-----~~--------~~~Dv----~~~~~v~~~ 63 (237)
T d1uzma1 6 VSRSVLVTGGNRGIGLAIAQRLAADGH----KVAVT-HRGSGAPKGL-----FG--------VEVDV----TDSDAVDRA 63 (237)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTC----EEEEE-ESSSCCCTTS-----EE--------EECCT----TCHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCcchhcCc-----eE--------EEEec----CCHHHHHHH
Confidence 3445555555 6799999999999999 99999 8886543211 00 01111 135667788
Q ss_pred HHHhccccCCCCEEEEecC
Q 024016 88 AMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 88 ~~~i~~~l~~~~~vis~~~ 106 (274)
++++...+.+=.++|+..+
T Consensus 64 ~~~~~~~~g~iDiLVnnAG 82 (237)
T d1uzma1 64 FTAVEEHQGPVEVLVSNAG 82 (237)
T ss_dssp HHHHHHHHSSCSEEEEECS
T ss_pred HHHHHHhcCCceEEEeeec
Confidence 8777665544357787644
|
| >d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=92.49 E-value=0.24 Score=35.47 Aligned_cols=66 Identities=17% Similarity=0.274 Sum_probs=49.2
Q ss_pred CCCeEEEEcc---cHHHHHHHHHHHhCCCCCCCcEEEEeCCCH-----HHHHHHHHc--CceeccCchhhccCCCEEEEe
Q 024016 9 ESFILGFIGA---GKMAESIAKGVAKSGVLPPDRICTAVHSNL-----KRRDAFESI--GVKVLSDNNAVVEYSDVVVFS 78 (274)
Q Consensus 9 ~~~~IgiIG~---G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-----~~~~~l~~~--g~~~~~~~~~~~~~aDiIil~ 78 (274)
+..||+|||= ++...+++..+.+-|. +++++ .+.. +..+.+.+. .+..+.|+.++++++|+|..-
T Consensus 3 ~gl~i~~vGD~~~srV~~Sli~~~~~~g~----~~~~~-~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~aDvvy~~ 77 (157)
T d1ml4a2 3 DGLKIGLLGDLKYGRTVHSLAEALTFYDV----ELYLI-SPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVT 77 (157)
T ss_dssp SSEEEEEESCTTTCHHHHHHHHHGGGSCE----EEEEE-CCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEEC
T ss_pred CCCEEEEEcCCccChHHHHHHHHHHhcCC----cEEEE-ccchhhcchHHHHHHHhhcccceeecCHHHhhccCcEEEee
Confidence 4579999998 6899999999999888 88888 5432 223334443 345678899999999987765
Q ss_pred e
Q 024016 79 V 79 (274)
Q Consensus 79 v 79 (274)
.
T Consensus 78 ~ 78 (157)
T d1ml4a2 78 R 78 (157)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.43 E-value=0.046 Score=41.62 Aligned_cols=42 Identities=7% Similarity=0.181 Sum_probs=32.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD 52 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~ 52 (274)
.+.||.|||.|.-|..++.+|.+.|. ...+.+.. |.+.+.++
T Consensus 14 ~~~ki~ViGvGGaG~n~v~~l~~~~~-~~v~~iai-nTD~~~L~ 55 (209)
T d2vapa1 14 TKAKITVVGCGGAGNNTITRLKMEGI-EGAKTVAI-NTDAQQLI 55 (209)
T ss_dssp TCCCEEEEEEHHHHHHHHHHHHHHTC-TTEEEEEE-ESBHHHHH
T ss_pred cCCcEEEEEeCChHHHHHHHHHHcCC-CceEEEEE-eCCHHHHh
Confidence 35799999999999999999999886 33355666 77665544
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=92.40 E-value=0.033 Score=45.60 Aligned_cols=31 Identities=13% Similarity=0.072 Sum_probs=26.7
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEE
Q 024016 9 ESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTA 43 (274)
Q Consensus 9 ~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~ 43 (274)
++|||-|.| +|-+|+.++..|+++|+ +|.++
T Consensus 1 ~~mkILVTGgtGfIGs~lv~~L~~~g~----~v~v~ 32 (346)
T d1oc2a_ 1 QFKNIIVTGGAGFIGSNFVHYVYNNHP----DVHVT 32 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHCT----TCEEE
T ss_pred CcCEEEEeCCCcHHHHHHHHHHHHCCC----CeEEE
Confidence 478999996 79999999999999998 65554
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=92.32 E-value=0.27 Score=37.85 Aligned_cols=73 Identities=12% Similarity=0.226 Sum_probs=44.1
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHh-CCCCCCCcEEEEe-------CC---CHHHHHHHHH-cC-------ceeccCchh
Q 024016 7 PAESFILGFIGAGKMAESIAKGVAK-SGVLPPDRICTAV-------HS---NLKRRDAFES-IG-------VKVLSDNNA 67 (274)
Q Consensus 7 ~~~~~~IgiIG~G~mG~~~a~~L~~-~g~~~~~~v~v~~-------~r---~~~~~~~l~~-~g-------~~~~~~~~~ 67 (274)
..+.+||.|-|.|++|...++.|.+ .|. .|+... +. +.+.+..+.+ .+ .+.. ++.+
T Consensus 28 ~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga----~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~-~~~~ 102 (234)
T d1b26a1 28 DPKKATVAVQGFGNVGQFAALLISQELGS----KVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERI-TNEE 102 (234)
T ss_dssp CTTTCEEEEECCSHHHHHHHHHHHHHHCC----EEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEEE-CHHH
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHhcCC----ceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccceee-cccc
Confidence 3466899999999999999999964 586 555331 22 2233333332 12 2222 2334
Q ss_pred hcc-CCCEEEEeeCcccH
Q 024016 68 VVE-YSDVVVFSVKPQVV 84 (274)
Q Consensus 68 ~~~-~aDiIil~v~~~~~ 84 (274)
... +|||++-|--...+
T Consensus 103 ~~~~~~DI~~PcA~~~~I 120 (234)
T d1b26a1 103 LLELDVDILVPAALEGAI 120 (234)
T ss_dssp HHTSCCSEEEECSCTTCB
T ss_pred ccccccceeecchhcccc
Confidence 444 89999888654443
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=92.20 E-value=0.17 Score=39.31 Aligned_cols=75 Identities=12% Similarity=0.108 Sum_probs=51.5
Q ss_pred EEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHHHHHhc
Q 024016 14 GFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAMQIR 92 (274)
Q Consensus 14 giIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~~~i~ 92 (274)
-|-|+ +.+|.++|+.|.+.|+ +|.+. +|+.++.+++.+.+.. ...+|+ +.+++++++++++.
T Consensus 4 lVTGas~GiG~aiA~~la~~Ga----~V~i~-~r~~~~~~~~~~~~~~--------~~~~dv----~~~~~~~~~~~~~~ 66 (252)
T d1zmta1 4 IVTNVKHFGGMGSALRLSEAGH----TVACH-DESFKQKDELEAFAET--------YPQLKP----MSEQEPAELIEAVT 66 (252)
T ss_dssp EESSTTSTTHHHHHHHHHHTTC----EEEEC-CGGGGSHHHHHHHHHH--------CTTSEE----CCCCSHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHHHHCCC----EEEEE-ECCHHHHHHHHhhhCc--------EEEecc----CCHHHHHHHHHHHH
Confidence 34455 5599999999999999 99999 9998888777642211 123443 25667778887776
Q ss_pred cccCCCCEEEEec
Q 024016 93 PLLSRKKLLVSVA 105 (274)
Q Consensus 93 ~~l~~~~~vis~~ 105 (274)
..+.+=.++|+..
T Consensus 67 ~~~G~iDiLVnNA 79 (252)
T d1zmta1 67 SAYGQVDVLVSND 79 (252)
T ss_dssp HHHSCCCEEEEEC
T ss_pred HHcCCCCEEEECC
Confidence 6554435777653
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=92.10 E-value=0.078 Score=41.51 Aligned_cols=39 Identities=15% Similarity=0.109 Sum_probs=32.4
Q ss_pred CCCCeEEEEcc-cH--HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH
Q 024016 8 AESFILGFIGA-GK--MAESIAKGVAKSGVLPPDRICTAVHSNLKRR 51 (274)
Q Consensus 8 ~~~~~IgiIG~-G~--mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~ 51 (274)
++.+++-|.|+ |. ||.++|+.|.+.|. +|.+. +|+.++.
T Consensus 4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga----~Vil~-~~~~~~~ 45 (268)
T d2h7ma1 4 LDGKRILVSGIITDSSIAFHIARVAQEQGA----QLVLT-GFDRLRL 45 (268)
T ss_dssp TTTCEEEECCCSSTTCHHHHHHHHHHHTTC----EEEEE-ECSCHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHcCC----EEEEE-eCChHHH
Confidence 35667878885 65 99999999999999 99998 8887665
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=92.06 E-value=0.095 Score=41.70 Aligned_cols=42 Identities=19% Similarity=0.131 Sum_probs=35.5
Q ss_pred CCCCCCCCeEEEEccc---HHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH
Q 024016 4 FPIPAESFILGFIGAG---KMAESIAKGVAKSGVLPPDRICTAVHSNLKR 50 (274)
Q Consensus 4 ~~~~~~~~~IgiIG~G---~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~ 50 (274)
||-.++.+++-|.|++ -+|.++|+.|.+.|. +|++. +|++..
T Consensus 2 ~~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga----~Vvi~-~~~~~~ 46 (297)
T d1d7oa_ 2 LPIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGA----EILVG-TWVPAL 46 (297)
T ss_dssp CCCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTC----EEEEE-EEHHHH
T ss_pred CCcCCCCCEEEEECCCCCchHHHHHHHHHHHCCC----EEEEE-eCchhh
Confidence 6777788888888986 599999999999999 99988 887654
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.02 E-value=0.072 Score=40.88 Aligned_cols=87 Identities=17% Similarity=0.074 Sum_probs=56.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cC-----------------------cee-cc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IG-----------------------VKV-LS 63 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g-----------------------~~~-~~ 63 (274)
...||-.+|||. | ..+..|.+.|+ +|+.+ |.+++.++.+.+ .+ ++. ..
T Consensus 45 ~~~rvLd~GCG~-G-~~a~~LA~~G~----~V~gv-D~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 117 (229)
T d2bzga1 45 SGLRVFFPLCGK-A-VEMKWFADRGH----SVVGV-EISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCC 117 (229)
T ss_dssp CSCEEEETTCTT-C-THHHHHHHTTC----EEEEE-CSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEES
T ss_pred CCCEEEEeCCCC-c-HHHHHHHhCCC----cEEEE-eCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEc
Confidence 346899999998 4 46778889999 99999 999988876654 11 111 11
Q ss_pred Cchh----hccCCCEEEEe-----eCcccHHHHHHHhccccCCCCEEE
Q 024016 64 DNNA----VVEYSDVVVFS-----VKPQVVKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 64 ~~~~----~~~~aDiIil~-----v~~~~~~~v~~~i~~~l~~~~~vi 102 (274)
+..+ .....|+|+.+ ++++..+..+..+...++||..++
T Consensus 118 d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~ 165 (229)
T d2bzga1 118 SIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYL 165 (229)
T ss_dssp CGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEE
T ss_pred chhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEE
Confidence 1111 12234666543 356667777777777777776533
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=91.98 E-value=0.08 Score=36.68 Aligned_cols=33 Identities=18% Similarity=0.102 Sum_probs=30.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
.++.|||.|.+|.=+|..+.+.|. +|++. .+.+
T Consensus 27 ~~vvIiGgG~IG~E~A~~~~~~G~----~Vtiv-e~~~ 59 (125)
T d1ojta2 27 GKLLIIGGGIIGLEMGTVYSTLGS----RLDVV-EMMD 59 (125)
T ss_dssp SEEEEESCSHHHHHHHHHHHHHTC----EEEEE-CSSS
T ss_pred CeEEEECCCHHHHHHHHHhhcCCC----EEEEE-Eeec
Confidence 589999999999999999999998 99999 7654
|
| >d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Bacillus subtilis [TaxId: 1423]
Probab=91.85 E-value=0.13 Score=36.85 Aligned_cols=63 Identities=21% Similarity=0.235 Sum_probs=46.9
Q ss_pred CCCeEEEEcc---cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee
Q 024016 9 ESFILGFIGA---GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV 79 (274)
Q Consensus 9 ~~~~IgiIG~---G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v 79 (274)
+.+||+|||= +++..+++..+.+-|. ++.+. .+..-.. .+..+....+..++++++|+|..-.
T Consensus 2 ~gl~i~~vGD~~~srv~~Sl~~~~~~~g~----~~~i~-~P~~~~~---~~~~~~~~~~~~ea~~~aDviy~~r 67 (151)
T d2at2a2 2 KGLTVSIHGDIKHSRVARSNAEVLTRLGA----RVLFS-GPSEWQD---EENTFGTYVSMDEAVESSDVVMLLR 67 (151)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHcCC----ccccc-CCchhhc---cccceeEEEechhccccCceeeeeE
Confidence 3579999997 6899999999999998 88877 5432111 1234556678889999999987643
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=91.77 E-value=0.028 Score=37.96 Aligned_cols=26 Identities=8% Similarity=0.096 Sum_probs=22.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGV 34 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~ 34 (274)
..++|.|||.|+=|.=++..|.+.+-
T Consensus 31 ~gK~VlVVG~g~Sa~dia~~l~~~ak 56 (107)
T d2gv8a2 31 VGESVLVVGGASSANDLVRHLTPVAK 56 (107)
T ss_dssp TTCCEEEECSSHHHHHHHHHHTTTSC
T ss_pred CCCeEEEECCCCCHHHHHHHHHHhcC
Confidence 45899999999999999999987654
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=91.76 E-value=0.037 Score=43.44 Aligned_cols=37 Identities=22% Similarity=0.347 Sum_probs=28.6
Q ss_pred EEEE--cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH-HHHH
Q 024016 13 LGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR-RDAF 54 (274)
Q Consensus 13 IgiI--G~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~-~~~l 54 (274)
+++| |.+.+|.++++.|+++|+ +|++. +|+.++ .+++
T Consensus 3 vAlVTGas~GIG~aia~~la~~G~----~Vvi~-~r~~~~~~~~~ 42 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQGF----RVVVH-YRHSEGAAQRL 42 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTC----EEEEE-ESSCHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCchHHHHHH
Confidence 4555 556799999999999999 99999 877554 3443
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=91.74 E-value=0.077 Score=43.14 Aligned_cols=31 Identities=10% Similarity=0.188 Sum_probs=27.9
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCC
Q 024016 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHS 46 (274)
Q Consensus 11 ~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r 46 (274)
|||.|+| .|-+|+.+++.|++.|| +|++. +|
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~----~V~~~-d~ 32 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGH----DVIIL-DN 32 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-EC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC----EEEEE-EC
Confidence 6899995 59999999999999999 99988 65
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=91.45 E-value=0.065 Score=41.69 Aligned_cols=42 Identities=21% Similarity=0.068 Sum_probs=35.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFE 55 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~ 55 (274)
+...|.|||+|.-|...|..|.++|+ +|.++ ++++.--.++.
T Consensus 3 ~~~DViIIGaG~aGl~aA~~la~~G~----~V~vl-Ek~~~~G~k~~ 44 (253)
T d2gqfa1 3 QYSENIIIGAGAAGLFCAAQLAKLGK----SVTVF-DNGKKIGRKIL 44 (253)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSSSSCHHHH
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCC----cEEEE-ecCCCCCCceE
Confidence 44579999999999999999999999 99999 98875444443
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=91.43 E-value=0.13 Score=35.61 Aligned_cols=81 Identities=19% Similarity=0.314 Sum_probs=57.4
Q ss_pred CCCCCCCCeEEEEcccH-----------HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCC
Q 024016 4 FPIPAESFILGFIGAGK-----------MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYS 72 (274)
Q Consensus 4 ~~~~~~~~~IgiIG~G~-----------mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~a 72 (274)
||...+.+||-|||.|. .+...++.|.+.|+ ++.+. |.||+.. .+|.. -+
T Consensus 1 mp~~~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~----~~ili-N~NP~TV----------std~d----~a 61 (127)
T d1a9xa3 1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGY----RVINV-NSNPATI----------MTDPE----MA 61 (127)
T ss_dssp CCCCSSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTC----EEEEE-CSCTTCG----------GGCGG----GS
T ss_pred CCCCCCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCC----eEEEe-cCchHhh----------hcChh----hc
Confidence 67777789999999985 57788999999999 99999 8888743 34432 35
Q ss_pred CEEEE-eeCcccHHHHHHHhccccCCCCEEEEecCCC
Q 024016 73 DVVVF-SVKPQVVKDVAMQIRPLLSRKKLLVSVAAGV 108 (274)
Q Consensus 73 DiIil-~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~ 108 (274)
|-+++ ++..+.+.++++.= +|+.++.++ +|-
T Consensus 62 D~lYfePlt~e~v~~Ii~~E----~pd~il~~~-GGQ 93 (127)
T d1a9xa3 62 DATYIEPIHWEVVRKIIEKE----RPDAVLPTM-GGQ 93 (127)
T ss_dssp SEEECSCCCHHHHHHHHHHH----CCSEEECSS-SHH
T ss_pred ceeeeecCCHHHHHHHHHHh----CcCCeEEEe-eee
Confidence 55544 77788888887653 465555543 443
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=91.41 E-value=0.18 Score=39.40 Aligned_cols=86 Identities=13% Similarity=0.091 Sum_probs=50.1
Q ss_pred CCCCCeEEEE-cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---Ccc
Q 024016 7 PAESFILGFI-GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQ 82 (274)
Q Consensus 7 ~~~~~~IgiI-G~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~ 82 (274)
|...+++-|. |.+-+|.++++.|.+.|+ +|++.++|+.+..+.+.+. ..+ ...+++++.+ .++
T Consensus 3 ~L~GK~alITGas~GIG~aia~~la~~G~----~Vvi~~~~~~~~~~~~~~~-------~~~--~g~~~~~~~~D~~~~~ 69 (259)
T d1ja9a_ 3 PLAGKVALTTGAGRGIGRGIAIELGRRGA----SVVVNYGSSSKAAEEVVAE-------LKK--LGAQGVAIQADISKPS 69 (259)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC----EEEEEESSCHHHHHHHHHH-------HHH--TTCCEEEEECCTTSHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC----EEEEEcCCChHHHHHHHHH-------HHH--cCCCceEecCCCCCHH
Confidence 3344445444 557799999999999999 9987427777666655430 000 1123444433 345
Q ss_pred cHHHHHHHhccccCCCCEEEEec
Q 024016 83 VVKDVAMQIRPLLSRKKLLVSVA 105 (274)
Q Consensus 83 ~~~~v~~~i~~~l~~~~~vis~~ 105 (274)
.++++++++...+..=.++|+..
T Consensus 70 ~v~~~~~~~~~~~g~idilinna 92 (259)
T d1ja9a_ 70 EVVALFDKAVSHFGGLDFVMSNS 92 (259)
T ss_dssp HHHHHHHHHHHHHSCEEEEECCC
T ss_pred HHHHHHHHHHHHcCCCcEEEecc
Confidence 57777766655443323556543
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=91.35 E-value=0.11 Score=40.50 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=31.2
Q ss_pred CCCeEEEEccc---HHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHH
Q 024016 9 ESFILGFIGAG---KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAF 54 (274)
Q Consensus 9 ~~~~IgiIG~G---~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l 54 (274)
+.+++-|.|++ -+|.++|+.|++.|+ +|++. +|+++..+.+
T Consensus 4 ~gK~~lITGass~~GIG~aiA~~l~~~G~----~V~i~-~~~~~~~~~~ 47 (258)
T d1qsga_ 4 SGKRILVTGVASKLSIAYGIAQAMHREGA----ELAFT-YQNDKLKGRV 47 (258)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTTC----EEEEE-ESSTTTHHHH
T ss_pred CCCEEEEECCCCchhHHHHHHHHHHHcCC----EEEEE-eCCHHHHHHH
Confidence 45567666765 388999999999999 99999 8876544433
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=91.17 E-value=0.26 Score=37.79 Aligned_cols=87 Identities=10% Similarity=0.076 Sum_probs=56.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----cC--ceec-cCchhh--ccCCCEEEEee
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IG--VKVL-SDNNAV--VEYSDVVVFSV 79 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~----~g--~~~~-~~~~~~--~~~aDiIil~v 79 (274)
+.++|.=||||. |. ++..|.+.|+ +|+.. |.+++-++.+++ .+ ++.. .+..++ -+..|+|++.-
T Consensus 41 ~~~~iLDiGcGt-G~-~~~~l~~~~~----~v~gv-D~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD~I~~~~ 113 (251)
T d1wzna1 41 EVRRVLDLACGT-GI-PTLELAERGY----EVVGL-DLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFF 113 (251)
T ss_dssp CCCEEEEETCTT-CH-HHHHHHHTTC----EEEEE-ESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECS
T ss_pred CCCEEEEeCCCC-Cc-cchhhcccce----EEEEE-eeccccccccccccccccccchheehhhhhcccccccchHhhhh
Confidence 346899999997 44 4556888888 99999 999977665544 23 3322 222221 13568887652
Q ss_pred ------CcccHHHHHHHhccccCCCCEEE
Q 024016 80 ------KPQVVKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 80 ------~~~~~~~v~~~i~~~l~~~~~vi 102 (274)
.+.....++.++...++||.+++
T Consensus 114 ~~~~~~~~~~~~~~L~~~~~~LkpgG~li 142 (251)
T d1wzna1 114 STIMYFDEEDLRKLFSKVAEALKPGGVFI 142 (251)
T ss_dssp SGGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred hhhhcCChHHHHHHHHHHHHHcCCCcEEE
Confidence 23456678888888888876554
|
| >d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: Dhaf3308-like family: Dhaf3308-like domain: Hypothetical protein Dhaf 3308 species: Desulfitobacterium hafniense [TaxId: 49338]
Probab=91.05 E-value=0.18 Score=39.42 Aligned_cols=53 Identities=11% Similarity=0.121 Sum_probs=39.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEe
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFS 78 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~ 78 (274)
..||++||. + +....+.+.|. +++++ +|+++ .|........+++.+||+||+.
T Consensus 122 g~kV~vIG~--~--P~v~~l~~~~~----~~~Vl-E~~p~-------~gd~p~~~~~~lLp~aD~viiT 174 (251)
T d2h1qa1 122 GKKVGVVGH--F--PHLESLLEPIC----DLSIL-EWSPE-------EGDYPLPASEFILPECDYVYIT 174 (251)
T ss_dssp TSEEEEESC--C--TTHHHHHTTTS----EEEEE-ESSCC-------TTCEEGGGHHHHGGGCSEEEEE
T ss_pred CCEEEEEec--c--hhHHHHHhcCC----cEEEE-eCCCC-------CCCCCchHHHHhhhcCCEEEEE
Confidence 479999975 4 57778888888 99999 99874 3433334456778899998886
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.01 E-value=0.09 Score=42.62 Aligned_cols=33 Identities=9% Similarity=0.019 Sum_probs=28.0
Q ss_pred CeEE-EE-cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 11 FILG-FI-GAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 11 ~~Ig-iI-G~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
+||+ |. |+|-+|+.++..|+++|| +|++. +|.+
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~----~V~~i-~r~~ 35 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGY----EVHGI-VRRS 35 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ECCC
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcC----EEEEE-ECCC
Confidence 4885 55 569999999999999999 99998 7754
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=90.96 E-value=0.33 Score=35.92 Aligned_cols=86 Identities=15% Similarity=0.110 Sum_probs=56.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----cCc---ee-ccCchh--hccCCCEEEEee
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IGV---KV-LSDNNA--VVEYSDVVVFSV 79 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~----~g~---~~-~~~~~~--~~~~aDiIil~v 79 (274)
..+|-=|||| .|. .+..|.+.|+ +|+.+ |.+++.++.+.+ .|+ .. ..+..+ .-...|+|+..-
T Consensus 31 ~grvLDiGcG-~G~-~~~~la~~g~----~v~gv-D~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~I~~~~ 103 (198)
T d2i6ga1 31 PGRTLDLGCG-NGR-NSLYLAANGY----DVTAW-DKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTV 103 (198)
T ss_dssp SCEEEEETCT-TSH-HHHHHHHTTC----EEEEE-ESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEEEEEES
T ss_pred CCcEEEECCC-CCH-HHHHHHHHhh----hhccc-cCcHHHHHHHHHHhhhccccchhhhheecccccccccccEEEEee
Confidence 3489999999 444 5567778898 99999 999987765543 333 22 122221 113458888643
Q ss_pred -----CcccHHHHHHHhccccCCCCEEE
Q 024016 80 -----KPQVVKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 80 -----~~~~~~~v~~~i~~~l~~~~~vi 102 (274)
|+.....++.++...++|+..++
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~ 131 (198)
T d2i6ga1 104 VMMFLEAQTIPGLIANMQRCTKPGGYNL 131 (198)
T ss_dssp CGGGSCTTHHHHHHHHHHHTEEEEEEEE
T ss_pred eeecCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 55667788888888788876554
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.90 E-value=0.12 Score=40.13 Aligned_cols=83 Identities=13% Similarity=0.171 Sum_probs=51.6
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---Cccc
Q 024016 8 AESFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQV 83 (274)
Q Consensus 8 ~~~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~ 83 (274)
|+.++|-|.| .+-+|.++++.|++.|+ ...|++. .|++++.+++.+.. ...+.++.+ ..+.
T Consensus 1 M~~KtilITGassGIG~a~a~~la~~G~--~~~Vi~~-~R~~~~~~~l~~~~------------~~~~~~~~~Dvs~~~~ 65 (250)
T d1yo6a1 1 MSPGSVVVTGANRGIGLGLVQQLVKDKN--IRHIIAT-ARDVEKATELKSIK------------DSRVHVLPLTVTCDKS 65 (250)
T ss_dssp CCCSEEEESSCSSHHHHHHHHHHHTCTT--CCEEEEE-ESSGGGCHHHHTCC------------CTTEEEEECCTTCHHH
T ss_pred CcCCEEEEeCCCCHHHHHHHHHHHHCCC--CCEEEEE-eCCHHHHHHHHHhh------------CCceEEEEEecCCHHH
Confidence 3445666665 58999999999999995 1157777 89998887765421 122333333 3456
Q ss_pred HHHHHHHhccccCC--CCEEEEec
Q 024016 84 VKDVAMQIRPLLSR--KKLLVSVA 105 (274)
Q Consensus 84 ~~~v~~~i~~~l~~--~~~vis~~ 105 (274)
++++++.+...+.. =.++|...
T Consensus 66 v~~~~~~i~~~~~~~~idilinnA 89 (250)
T d1yo6a1 66 LDTFVSKVGEIVGSDGLSLLINNA 89 (250)
T ss_dssp HHHHHHHHHHHHGGGCCCEEEECC
T ss_pred HHHHHHHHHHHhCCCCeEEEEEcC
Confidence 77777766543322 13566553
|
| >d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.78 E-value=0.065 Score=36.15 Aligned_cols=70 Identities=10% Similarity=0.154 Sum_probs=50.8
Q ss_pred CeEEEEcc----------cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeC
Q 024016 11 FILGFIGA----------GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVK 80 (274)
Q Consensus 11 ~~IgiIG~----------G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~ 80 (274)
++|||.|+ ..-.--+...|.+.|. +|.+| |+.-...+ ...+.....+..+..+.+|+||+...
T Consensus 16 k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~----~v~iy-DP~v~~~~--~~~~~~~~~~l~~~~~~sDiII~~~~ 88 (108)
T d1dlja3 16 KVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDI----KIIIY-EPMLNKLE--SEDQSVLVNDLENFKKQANIIVTNRY 88 (108)
T ss_dssp CEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSC----EEEEE-CTTCSCCC--TTCCSEECCCHHHHHHHCSEEECSSC
T ss_pred CEEEEEEEEECCCCcchhhhhHHHHHHHHhcccc----ceeee-cCCcChhH--hccCCEEEeCHHHHHhhCCEEEEcCC
Confidence 47999997 3566778999999998 99999 87653321 11456677788888899998877666
Q ss_pred cccHHHH
Q 024016 81 PQVVKDV 87 (274)
Q Consensus 81 ~~~~~~v 87 (274)
...+.++
T Consensus 89 ~~~~~~~ 95 (108)
T d1dlja3 89 DNELQDV 95 (108)
T ss_dssp CGGGGGG
T ss_pred chHHHhc
Confidence 6655443
|
| >d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=90.76 E-value=0.34 Score=34.52 Aligned_cols=66 Identities=14% Similarity=0.335 Sum_probs=45.2
Q ss_pred CCCeEEEEcc---cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH--HHHHHH--cCceeccCchhhccCCCEEEEe
Q 024016 9 ESFILGFIGA---GKMAESIAKGVAKSGVLPPDRICTAVHSNLKR--RDAFES--IGVKVLSDNNAVVEYSDVVVFS 78 (274)
Q Consensus 9 ~~~~IgiIG~---G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~--~~~l~~--~g~~~~~~~~~~~~~aDiIil~ 78 (274)
+..||+|||= +++..+++..+.+-|. ++.++....... .+.+.. ..+...+++.++++++|+|..-
T Consensus 2 ~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~----~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvvy~~ 74 (153)
T d1pg5a2 2 DGLVFALLGDLKYARTVNSLLRILTRFRP----KLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVT 74 (153)
T ss_dssp TTCEEEEEECCSSCHHHHHHHHHGGGSCC----SEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEE
T ss_pred CCCEEEEECCCCccHHHHHHHHHHHHcCC----eeEEEecccccccchhhcccCCCeEEEEeCHHHHhhcCCeEEEe
Confidence 4579999997 4599999999999887 765541322111 112222 3456678899999999988754
|
| >d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Achromobacter xylosoxidans [TaxId: 85698]
Probab=90.73 E-value=0.21 Score=36.65 Aligned_cols=46 Identities=13% Similarity=0.178 Sum_probs=31.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeC-CCHHHHHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVH-SNLKRRDAFES 56 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~-r~~~~~~~l~~ 56 (274)
+||||=|.|++|+.+.+.+++.+.-+..+|...++ .+++....|.+
T Consensus 2 ikigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~~~~~~~ayLlk 48 (173)
T d1obfo1 2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTR 48 (173)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHH
T ss_pred eEEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCCCChHHHHHhhc
Confidence 69999999999999999998654212226666634 34555556655
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.65 E-value=0.024 Score=41.86 Aligned_cols=89 Identities=15% Similarity=0.066 Sum_probs=55.3
Q ss_pred CCCCCeEEEEcccH-HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH-HHHH-----HcCce-e----ccCchhhccCCCE
Q 024016 7 PAESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSNLKRR-DAFE-----SIGVK-V----LSDNNAVVEYSDV 74 (274)
Q Consensus 7 ~~~~~~IgiIG~G~-mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~-~~l~-----~~g~~-~----~~~~~~~~~~aDi 74 (274)
..+.+++.|||-++ +|.+|+.-|.+.|. .|+.+ +++.... ..-. ..+.. + .+...+....+|+
T Consensus 26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~ga----TVt~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDI 100 (171)
T d1edza1 26 RLYGKKCIVINRSEIVGRPLAALLANDGA----TVYSV-DVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDV 100 (171)
T ss_dssp TTTTCEEEEECCCTTTHHHHHHHHHTTSC----EEEEE-CSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSE
T ss_pred CCCCCEEEEECCccccHHHHHHHHHHCCC----EEEEe-ccccccccccccceeeeeeccccccccchhHHhhccccCCE
Confidence 45668999999775 59999999999987 89888 6542110 0000 00100 0 0113455668999
Q ss_pred EEEeeCcccHHHHHHHhccccCCCCEEEEe
Q 024016 75 VVFSVKPQVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 75 Iil~v~~~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
+|.+++...+. + -.+++++|.++|+.
T Consensus 101 vIsavG~p~~~--i--~~d~ik~GavvIDv 126 (171)
T d1edza1 101 VITGVPSENYK--F--PTEYIKEGAVCINF 126 (171)
T ss_dssp EEECCCCTTCC--B--CTTTSCTTEEEEEC
T ss_pred EEEccCCCccc--c--ChhhcccCceEeec
Confidence 99999643220 0 01346789999986
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=90.56 E-value=0.12 Score=39.69 Aligned_cols=33 Identities=24% Similarity=0.232 Sum_probs=30.2
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLK 49 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~ 49 (274)
-|.|||+|.-|...|..|.++|+ +|.++ ++++.
T Consensus 4 DViIIGaG~aGl~aA~~la~~G~----~V~li-Ek~~~ 36 (251)
T d2i0za1 4 DVIVIGGGPSGLMAAIGAAEEGA----NVLLL-DKGNK 36 (251)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCC----cEEEE-eCCCC
Confidence 58999999999999999999999 99999 88754
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=90.41 E-value=0.3 Score=36.56 Aligned_cols=88 Identities=11% Similarity=0.089 Sum_probs=56.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----cCc--e-eccCchhhc---cCCCEEEEee
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IGV--K-VLSDNNAVV---EYSDVVVFSV 79 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~----~g~--~-~~~~~~~~~---~~aDiIil~v 79 (274)
..||-=||||.=. ++..|.+.|. +|+.. |.+++..+.+++ .+. . +..+..+.- ...|+|+..-
T Consensus 38 ~~~ILDiGcG~G~--~~~~la~~~~----~v~gi-D~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~ 110 (226)
T d1ve3a1 38 RGKVLDLACGVGG--FSFLLEDYGF----EVVGV-DISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFID 110 (226)
T ss_dssp CCEEEEETCTTSH--HHHHHHHTTC----EEEEE-ESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEES
T ss_pred CCEEEEECCCcch--hhhhHhhhhc----ccccc-cccccchhhhhhhhccccccccccccccccccccCcCceEEEEec
Confidence 4589999998833 4456777787 99999 999887765543 232 2 222322221 3458877642
Q ss_pred -----CcccHHHHHHHhccccCCCCEE-EEe
Q 024016 80 -----KPQVVKDVAMQIRPLLSRKKLL-VSV 104 (274)
Q Consensus 80 -----~~~~~~~v~~~i~~~l~~~~~v-is~ 104 (274)
++.+...++.++...++||..+ ++.
T Consensus 111 ~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~ 141 (226)
T d1ve3a1 111 SIVHFEPLELNQVFKEVRRVLKPSGKFIMYF 141 (226)
T ss_dssp CGGGCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhhCChhHHHHHHHHHHHHcCcCcEEEEEE
Confidence 4446777888888888887654 444
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=90.37 E-value=0.27 Score=38.35 Aligned_cols=86 Identities=16% Similarity=0.088 Sum_probs=58.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----cCce---eccCchhhc--cCCCEEEEeeC
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IGVK---VLSDNNAVV--EYSDVVVFSVK 80 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~----~g~~---~~~~~~~~~--~~aDiIil~v~ 80 (274)
.++|-=+|||.=. ++..+.+.|. +|+.+ |.+++..+...+ .|+. ...+..+.. ...|+|+....
T Consensus 121 g~~VLDiGcGsG~--l~i~aa~~g~----~V~gv-Dis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~V~ani~ 193 (254)
T d2nxca1 121 GDKVLDLGTGSGV--LAIAAEKLGG----KALGV-DIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLY 193 (254)
T ss_dssp TCEEEEETCTTSH--HHHHHHHTTC----EEEEE-ESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECC
T ss_pred cCEEEEcccchhH--HHHHHHhcCC----EEEEE-ECChHHHHHHHHHHHHcCCceeEEeccccccccccccchhhhccc
Confidence 4689999999733 4445667787 89999 999987765553 3432 222333332 46899987777
Q ss_pred cccHHHHHHHhccccCCCCEEE
Q 024016 81 PQVVKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 81 ~~~~~~v~~~i~~~l~~~~~vi 102 (274)
...+.++++.+...++||..++
T Consensus 194 ~~~l~~l~~~~~~~LkpGG~li 215 (254)
T d2nxca1 194 AELHAALAPRYREALVPGGRAL 215 (254)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEE
T ss_pred cccHHHHHHHHHHhcCCCcEEE
Confidence 7777788888877888876655
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.30 E-value=0.62 Score=40.31 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=28.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS 46 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r 46 (274)
..+|.|||+|.+|+-++++|...|. .+++++ |.
T Consensus 25 ~s~VlvvG~gglG~Ei~knLvl~GV---g~itiv-D~ 57 (529)
T d1yova1 25 SAHVCLINATATGTEILKNLVLPGI---GSFTII-DG 57 (529)
T ss_dssp HCEEEECCCSHHHHHHHHHHHTTTC---SEEEEE-CC
T ss_pred CCCEEEECCCHHHHHHHHHHHHhcC---CEEEEE-cC
Confidence 4689999999999999999999996 378887 55
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.29 E-value=0.11 Score=41.71 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=27.7
Q ss_pred EEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 13 LGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 13 IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
|.|||+|.-|.+-|..|.++|+ +|+++ +++
T Consensus 2 ViVIGaG~aGL~aA~~L~~~G~----~V~Vl-E~~ 31 (383)
T d2v5za1 2 VVVVGGGISGMAAAKLLHDSGL----NVVVL-EAR 31 (383)
T ss_dssp EEEECCBHHHHHHHHHHHHTTC----CEEEE-ESS
T ss_pred EEEECCCHHHHHHHHHHHhCCC----CEEEE-ecC
Confidence 7899999999999999999999 99999 654
|
| >d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Escherichia coli [TaxId: 562]
Probab=90.25 E-value=0.38 Score=35.39 Aligned_cols=66 Identities=18% Similarity=0.243 Sum_probs=48.0
Q ss_pred CCCeEEEEccc--HHHHHHHHHHHhCCCCCCCcEEEEeCCCH-----HHHHHH---H-HcC--ceeccCchhhccCCCEE
Q 024016 9 ESFILGFIGAG--KMAESIAKGVAKSGVLPPDRICTAVHSNL-----KRRDAF---E-SIG--VKVLSDNNAVVEYSDVV 75 (274)
Q Consensus 9 ~~~~IgiIG~G--~mG~~~a~~L~~~g~~~~~~v~v~~~r~~-----~~~~~l---~-~~g--~~~~~~~~~~~~~aDiI 75 (274)
+..||+|+|=| ++..+++..+..-|. +++++ .+.. +-.+.+ . ..| ...+.+..+++.++|+|
T Consensus 4 ~~l~i~~vGD~~nnv~~Sli~~~~~~g~----~l~~~-~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvv 78 (183)
T d1duvg2 4 NEMTLVYAGDARNNMGNSMLEAAALTGL----DLRLV-APQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFI 78 (183)
T ss_dssp GGCEEEEESCTTSHHHHHHHHHHHHHCC----EEEEE-CCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEE
T ss_pred CCCEEEEEcCCccHHHHHHHHHHHHcCC----EEEEE-echHhhhhHHHHHHHHHHHHhcCCceEEEechhhccccCCEE
Confidence 46799999955 799999999999898 99988 5421 111212 1 234 34678888999999999
Q ss_pred EEee
Q 024016 76 VFSV 79 (274)
Q Consensus 76 il~v 79 (274)
..-+
T Consensus 79 yt~~ 82 (183)
T d1duvg2 79 YTDV 82 (183)
T ss_dssp EECC
T ss_pred EEEe
Confidence 8765
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=89.97 E-value=0.14 Score=36.71 Aligned_cols=31 Identities=13% Similarity=0.185 Sum_probs=26.5
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
||.|||.|..|.-+|..|.+ ++ +|+++ +|.+
T Consensus 2 rVvIIGgG~~G~e~A~~l~~-~~----~Vtvv-~~~~ 32 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQ-TY----EVTVI-DKEP 32 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTT-TS----EEEEE-CSSS
T ss_pred eEEEECCcHHHHHHHHHHHc-CC----CEEEE-eccc
Confidence 89999999999999998864 66 89998 7643
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=89.80 E-value=0.82 Score=32.77 Aligned_cols=66 Identities=24% Similarity=0.307 Sum_probs=46.6
Q ss_pred CCCeEEEEccc-HHHHHHHHHHHhCCCCCCCcEEEEeCCC-----HHHHHHHHH----cC--ceeccCchhhccCCCEEE
Q 024016 9 ESFILGFIGAG-KMAESIAKGVAKSGVLPPDRICTAVHSN-----LKRRDAFES----IG--VKVLSDNNAVVEYSDVVV 76 (274)
Q Consensus 9 ~~~~IgiIG~G-~mG~~~a~~L~~~g~~~~~~v~v~~~r~-----~~~~~~l~~----~g--~~~~~~~~~~~~~aDiIi 76 (274)
+..||+|+|-| ++..+++..+.+-|. +++++ ... ++-.+.+.+ .+ +....++.++++++|+|.
T Consensus 3 ~gl~Ia~VGD~~nv~~Sli~~l~~~g~----~v~~~-~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy 77 (163)
T d1pvva2 3 KGVKVVYVGDGNNVAHSLMIAGTKLGA----DVVVA-TPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIY 77 (163)
T ss_dssp TTCEEEEESCCCHHHHHHHHHHHHTTC----EEEEE-CCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCC----eEEEe-cccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEEe
Confidence 56899999974 577888888888888 88888 542 222222222 12 456778899999999888
Q ss_pred Eee
Q 024016 77 FSV 79 (274)
Q Consensus 77 l~v 79 (274)
.-.
T Consensus 78 ~~~ 80 (163)
T d1pvva2 78 TDV 80 (163)
T ss_dssp ECC
T ss_pred ecc
Confidence 653
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=89.58 E-value=0.13 Score=41.43 Aligned_cols=34 Identities=15% Similarity=0.177 Sum_probs=29.0
Q ss_pred CeEEEEcccHHHHHHHHHHH-----hCCCCCCCcEEEEeCCCHH
Q 024016 11 FILGFIGAGKMAESIAKGVA-----KSGVLPPDRICTAVHSNLK 49 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~-----~~g~~~~~~v~v~~~r~~~ 49 (274)
.-|.|||+|..|.++|..|. ++|+ +|+++ +|++.
T Consensus 8 yDV~IvGaG~aGl~lA~~La~~~~~~~G~----~v~vl-Er~~~ 46 (360)
T d1pn0a1 8 CDVLIVGAGPAGLMAARVLSEYVRQKPDL----KVRII-DKRST 46 (360)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTC----CEEEE-CSSSS
T ss_pred CCEEEECcCHHHHHHHHHHHhcccccCCC----cEEEE-cCCCC
Confidence 35899999999999999995 5799 99999 87643
|
| >d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]
Probab=89.48 E-value=0.34 Score=35.27 Aligned_cols=41 Identities=12% Similarity=0.237 Sum_probs=33.7
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC--CHHHHHHHHH
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS--NLKRRDAFES 56 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r--~~~~~~~l~~ 56 (274)
||||=|.|++|+.+.+.+++.+. +|...++. +.+....|.+
T Consensus 2 kIgINGfGRIGR~~~R~~~~~~~----~ivaINd~~~~~~~~~yLlk 44 (169)
T d1dssg1 2 KIGINGFGRIGRLVLRAALEMGA----QVVAVNDPFIALEYMVYMFK 44 (169)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTC----CEEEEECTTSCHHHHHHHHH
T ss_pred eEEEECCcHHHHHHHHHHHhCCC----cEEEECCCCcCHHHHHHHHh
Confidence 89999999999999999999887 78777554 4566667766
|
| >d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Polymyxin resistance protein ArnA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.47 E-value=0.5 Score=35.36 Aligned_cols=106 Identities=8% Similarity=0.009 Sum_probs=54.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAMQ 90 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~~~ 90 (274)
|||.|+|.+.+|....+.|.++|+ +|...+.+...+-+. ....+..+.+++..+-+.....-.-+++++.
T Consensus 1 Mkiv~~~~~~~g~~~l~~L~~~g~----~I~~Vvt~~~~~~~~------~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~ 70 (203)
T d2blna2 1 MKTVVFAYHDMGCLGIEALLAAGY----EISAIFTHTDNPGEK------AFYGSVARLAAERGIPVYAPDNVNHPLWVER 70 (203)
T ss_dssp CEEEEEECHHHHHHHHHHHHHTTC----EEEEEECCCC------------CCCCHHHHHHHHTCCEECCSCCCSHHHHHH
T ss_pred CeEEEEecCHHHHHHHHHHHHCCC----CEEEEEcCCCCCCcc------cccCHHHHHHHHcCCcceecccccchhhhhh
Confidence 799999999999999999999998 885432543321110 0112233333333343443322112333333
Q ss_pred hccccCCCCEEEEecCC-CCHHHHHHhhCCCceEEEcCCc
Q 024016 91 IRPLLSRKKLLVSVAAG-VKLKDLQEWTGHSRFIRVMPNT 129 (274)
Q Consensus 91 i~~~l~~~~~vis~~~g-~~~~~l~~~~~~~~~~~~~p~~ 129 (274)
+.. .+++ ++++..-+ +-.+.+-+..+ ..++.+||..
T Consensus 71 i~~-~~~D-lii~~g~~~ii~~~il~~~~-~~~iN~H~sl 107 (203)
T d2blna2 71 IAQ-LSPD-VIFSFYYRHLIYDEILQLAP-AGAFNLHGSL 107 (203)
T ss_dssp HHH-TCCS-EEEEESCCSCCCHHHHTTCT-TCEEEEESSC
T ss_pred hhh-hccc-ceeeeecccchhcccchhhH-HHHHHHhhhc
Confidence 333 3554 56655433 32344433332 3467777753
|
| >d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Escherichia coli [TaxId: 562]
Probab=89.42 E-value=1.2 Score=31.72 Aligned_cols=66 Identities=17% Similarity=0.291 Sum_probs=45.6
Q ss_pred CCCeEEEEcc---cHHHHHHHHHHHhCCCCCCCcEEEEeCCC-----HHHHHHHHHcC--ceeccCchhhccCCCEEEEe
Q 024016 9 ESFILGFIGA---GKMAESIAKGVAKSGVLPPDRICTAVHSN-----LKRRDAFESIG--VKVLSDNNAVVEYSDVVVFS 78 (274)
Q Consensus 9 ~~~~IgiIG~---G~mG~~~a~~L~~~g~~~~~~v~v~~~r~-----~~~~~~l~~~g--~~~~~~~~~~~~~aDiIil~ 78 (274)
+..||+|||= +++..++...+.+-|. ..++++ ... +...+.+...| +..++++.++++++|+|..-
T Consensus 3 ~gl~i~~vGD~~nsrv~~Sli~~l~~~~~---~~~~~~-~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~ 78 (160)
T d1ekxa2 3 DNLHVAMVGDLKYGRTVHSLTQALAKFDG---NRFYFI-APDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMT 78 (160)
T ss_dssp SSCEEEEESCTTTCHHHHHHHHHHTTSSS---CEEEEE-CCGGGCCCHHHHHHHHHTTCCEEECSCSTTTGGGCSEEEEC
T ss_pred CCCEEEEEcCCCccHHHHHHHHHHHHcCC---CeEEee-ccchhhhhHHHHHHHhhhccccccccCHHHHhCcCceEEee
Confidence 4679999996 6699999998888764 145555 432 22233344444 45678889999999998754
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=89.29 E-value=0.35 Score=35.35 Aligned_cols=87 Identities=10% Similarity=0.086 Sum_probs=56.5
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCcee-c--cC--chh-h-----ccCCCEEE
Q 024016 9 ESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKV-L--SD--NNA-V-----VEYSDVVV 76 (274)
Q Consensus 9 ~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~-~--~~--~~~-~-----~~~aDiIi 76 (274)
...+|.|.|+ |.+|...++-....|. +|+.. .+++++.+.+++.|... . .+ ..+ + -...|+||
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga----~vi~~-~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~ 103 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLKGC----KVVGA-AGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYF 103 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHTTC----EEEEE-ESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEE
T ss_pred CCCEEEEEeCCCchhHHHHHHHHccCC----EEEEe-CCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeE
Confidence 3467888877 7788888877777887 99988 89999998888877542 1 11 111 1 12478888
Q ss_pred EeeCcccHHHHHHHhccccCCCCEEEEe
Q 024016 77 FSVKPQVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 77 l~v~~~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
=|+..+...+.+ +.++++..++.+
T Consensus 104 D~vG~~~~~~~~----~~l~~~G~~v~~ 127 (182)
T d1v3va2 104 DNVGGEFLNTVL----SQMKDFGKIAIC 127 (182)
T ss_dssp ESSCHHHHHHHG----GGEEEEEEEEEC
T ss_pred EecCchhhhhhh----hhccCCCeEEee
Confidence 887654444333 334455555544
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=89.22 E-value=0.28 Score=38.18 Aligned_cols=90 Identities=12% Similarity=0.144 Sum_probs=53.8
Q ss_pred CCeEEEEcccH--HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----cC----cee-ccCchhhc--cCCCEEE
Q 024016 10 SFILGFIGAGK--MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IG----VKV-LSDNNAVV--EYSDVVV 76 (274)
Q Consensus 10 ~~~IgiIG~G~--mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~----~g----~~~-~~~~~~~~--~~aDiIi 76 (274)
.++|.=+|+|. +...|++.+-..| .|+.+ +++++.++.+.+ .+ ++. ..|..+.. ...|.||
T Consensus 86 G~rVLEiG~GsG~lt~~la~~v~~~g-----~V~~v-D~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~fD~V~ 159 (250)
T d1yb2a1 86 GMDILEVGVGSGNMSSYILYALNGKG-----TLTVV-ERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVI 159 (250)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHTTSS-----EEEEE-CSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEE
T ss_pred cCEEEEeeeeCcHHHHHHHHHhCCCc-----EEEEE-ECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccceeeeee
Confidence 36888887754 5555666665555 79999 999988776654 22 222 12333333 2479999
Q ss_pred EeeCcccHHHHHHHhccccCCCCEEEEecCC
Q 024016 77 FSVKPQVVKDVAMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 77 l~v~~~~~~~v~~~i~~~l~~~~~vis~~~g 107 (274)
+-+|... ++++.+...++||..++.....
T Consensus 160 ld~p~p~--~~l~~~~~~LKpGG~lv~~~P~ 188 (250)
T d1yb2a1 160 ADIPDPW--NHVQKIASMMKPGSVATFYLPN 188 (250)
T ss_dssp ECCSCGG--GSHHHHHHTEEEEEEEEEEESS
T ss_pred ecCCchH--HHHHHHHHhcCCCceEEEEeCC
Confidence 8775321 2344444556677777754443
|
| >d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.83 E-value=0.31 Score=38.79 Aligned_cols=126 Identities=15% Similarity=0.211 Sum_probs=70.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhC----CCCC---CCcEEEEeCCCH----HH---HHHHHH----cCc-eeccCchhhc
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKS----GVLP---PDRICTAVHSNL----KR---RDAFES----IGV-KVLSDNNAVV 69 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~----g~~~---~~~v~v~~~r~~----~~---~~~l~~----~g~-~~~~~~~~~~ 69 (274)
...||.|.|+|.-|..++..|.+. |... ..+++++ |+.- .+ .+..++ ... ....+..+++
T Consensus 24 ~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lv-D~~Glv~~~r~~~~~~~k~~~a~~~~~~~~~~L~e~i 102 (294)
T d1pj3a1 24 SEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMF-DKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAV 102 (294)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEE-ETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHHHHH
T ss_pred HHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEE-eCCCCccCCCCcccHHHHHHhhccccccchhHHHHHH
Confidence 456899999999999999886654 3200 1257777 6521 11 111111 011 1123556666
Q ss_pred c--CCCEEEEee-Cccc-HHHHHHHhccccCCCCEEEEecCCCC-----HHHHHHhhCC-CceEEEcCCcHHhhcCC
Q 024016 70 E--YSDVVVFSV-KPQV-VKDVAMQIRPLLSRKKLLVSVAAGVK-----LKDLQEWTGH-SRFIRVMPNTPSAVGEA 136 (274)
Q Consensus 70 ~--~aDiIil~v-~~~~-~~~v~~~i~~~l~~~~~vis~~~g~~-----~~~l~~~~~~-~~~~~~~p~~~~~~~~g 136 (274)
+ +.|++|-+. ++.. -+++++.+.. ..+..+|..++++.+ .+...++..+ +-+....|..|.....|
T Consensus 103 ~~~kptvliG~S~~~g~ft~evi~~Ma~-~~~~PIIFaLSNPt~~~e~~~~~a~~~t~grai~asGspf~~v~~~~G 178 (294)
T d1pj3a1 103 NILKPSTIIGVAGAGRLFTPDVIRAMAS-INERPVIFALSNPTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTDG 178 (294)
T ss_dssp HHHCCSEEEECCCSSCCSCHHHHHHHHH-HCSSCEEEECCSSGGGCSCCHHHHHHHTTTCCEEEESSCCCCEECTTS
T ss_pred HhcCCceEEEecCCCCcCCHHHHHHHHh-cCCCcEEEEccCCCCcCCcCHHHHHhhccCceEeecCCccCCeEeCCC
Confidence 5 677777766 3433 4778877654 357778888888754 3344445443 23333445444433333
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=88.71 E-value=0.38 Score=36.33 Aligned_cols=88 Identities=16% Similarity=0.207 Sum_probs=55.6
Q ss_pred CCeEEEEcc--cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----cC----cee-ccCchhh-ccCCCEEEE
Q 024016 10 SFILGFIGA--GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IG----VKV-LSDNNAV-VEYSDVVVF 77 (274)
Q Consensus 10 ~~~IgiIG~--G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~----~g----~~~-~~~~~~~-~~~aDiIil 77 (274)
..+|.=||| |.+...+++.+...+. +|++. |.+++-++.+.+ .+ +.. ..+..+. ..++|+|+.
T Consensus 40 ~~~vLDlGCGtG~~~~~l~~~~~~~~~----~v~gi-D~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~ 114 (225)
T d1im8a_ 40 DSNVYDLGCSRGAATLSARRNINQPNV----KIIGI-DNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVIL 114 (225)
T ss_dssp TCEEEEESCTTCHHHHHHHHTCCCSSC----EEEEE-CSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEE
T ss_pred CCEEEEeccchhhHHHHHHHhhcCCCC----ceEEe-CCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEE
Confidence 458999999 5555555554444555 99999 999976665543 22 111 1222221 235676655
Q ss_pred ee-----CcccHHHHHHHhccccCCCCEEE
Q 024016 78 SV-----KPQVVKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 78 ~v-----~~~~~~~v~~~i~~~l~~~~~vi 102 (274)
.. ++++...+++++...|+||..++
T Consensus 115 ~~~l~~~~~~d~~~~l~~i~~~LkpgG~li 144 (225)
T d1im8a_ 115 NFTLQFLPPEDRIALLTKIYEGLNPNGVLV 144 (225)
T ss_dssp ESCGGGSCGGGHHHHHHHHHHHEEEEEEEE
T ss_pred eeeccccChhhHHHHHHHHHHhCCCCceee
Confidence 42 55677889999998898887666
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=88.61 E-value=0.22 Score=40.72 Aligned_cols=32 Identities=13% Similarity=0.211 Sum_probs=26.6
Q ss_pred eEE-EEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 12 ILG-FIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 12 ~Ig-iIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
||. |.| +|-+|+.+++.|++.|| +|++. +|..
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~----~V~~~-~r~~ 35 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGY----EVHGI-KRRA 35 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-CC--
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcC----EEEEE-ECCC
Confidence 556 556 89999999999999999 99999 8854
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=88.57 E-value=0.16 Score=40.47 Aligned_cols=30 Identities=13% Similarity=0.124 Sum_probs=25.9
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEE
Q 024016 10 SFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTA 43 (274)
Q Consensus 10 ~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~ 43 (274)
++||.|.| +|.+|+++++.|+++|+ .+++.
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~----~vi~~ 32 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGD----VELVL 32 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTT----EEEEC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCcC----EEEEe
Confidence 46899995 59999999999999998 77666
|
| >d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Hypothetical protein YaaE species: Bacillus stearothermophilus [TaxId: 1422]
Probab=88.56 E-value=0.49 Score=35.22 Aligned_cols=76 Identities=14% Similarity=0.266 Sum_probs=47.7
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEeeCc-ccH
Q 024016 7 PAESFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSVKP-QVV 84 (274)
Q Consensus 7 ~~~~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~-~~~ 84 (274)
.++.||||||-+ |+.-+ +.+.|.+.|+ ++.+. + ++ .+ +.++|.||++=.+ ...
T Consensus 3 ~~~~mkIgii~~~Gn~~s-~~~al~~~G~----~~~~v-~-~~-----------------~~-l~~~D~lIlPGG~~~~~ 57 (202)
T d1q7ra_ 3 FQSNMKIGVLGLQGAVRE-HVRAIEACGA----EAVIV-K-KS-----------------EQ-LEGLDGLVLPGGESTTM 57 (202)
T ss_dssp CCCCCEEEEESCGGGCHH-HHHHHHHTTC----EEEEE-C-SG-----------------GG-GTTCSEEEECCCCHHHH
T ss_pred cccCCEEEEEECCCCHHH-HHHHHHHCCC----cEEEE-C-CH-----------------HH-HhcCCEEEECCCCcHHH
Confidence 357799999988 99844 6788888998 77666 3 22 12 4578988886522 111
Q ss_pred HHH------HHHhccccCCCCEEEEecCC
Q 024016 85 KDV------AMQIRPLLSRKKLLVSVAAG 107 (274)
Q Consensus 85 ~~v------~~~i~~~l~~~~~vis~~~g 107 (274)
... .+.|......++.++-++-|
T Consensus 58 ~~~l~~~~l~~~I~~~~~~gkPiLGIClG 86 (202)
T d1q7ra_ 58 RRLIDRYGLMEPLKQFAAAGKPMFGTCAG 86 (202)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCEEEETTH
T ss_pred HHHhhhhHHHHHHhhhccccceeeeeehh
Confidence 111 12344445566777766665
|
| >d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: L-alanine dehydrogenase-like domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=88.48 E-value=0.61 Score=34.67 Aligned_cols=87 Identities=14% Similarity=0.197 Sum_probs=55.5
Q ss_pred HHHHHHHhCCCCCCCcEEEEeCCCHHH----HHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHHHHHhccccCCCC
Q 024016 24 SIAKGVAKSGVLPPDRICTAVHSNLKR----RDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKK 99 (274)
Q Consensus 24 ~~a~~L~~~g~~~~~~v~v~~~r~~~~----~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~~~i~~~l~~~~ 99 (274)
.-++.|.+.|| +|.+= .---.. =+...+.|+++.++.+++..++|+|+-.-+|..-+. -.+....+++++
T Consensus 21 ~~vkkl~~~G~----~V~vE-~gaG~~a~fsD~~Y~~aGA~i~~~~~~~~~~~diilkV~~P~~~e~-~~~ei~~lk~g~ 94 (194)
T d1l7da2 21 EVVKKLVGLGF----EVIVE-QGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAEE-GTDEVALIKEGA 94 (194)
T ss_dssp HHHHHHHHTTC----EEEEE-TTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEEECCCCGGG-SCCGGGGSCTTC
T ss_pred HHHHHHHHCCC----EEEEE-cCcccccCCCHHHHHHhhhhcchhhhhhhhcccceeEecCCccccc-chhHhhhccCce
Confidence 35678889999 88775 211111 144566899998888889999998877665543221 111233578999
Q ss_pred EEEEecCCCC-HHHHHHh
Q 024016 100 LLVSVAAGVK-LKDLQEW 116 (274)
Q Consensus 100 ~vis~~~g~~-~~~l~~~ 116 (274)
++|+...... .+.++..
T Consensus 95 ~li~~l~p~~~~~~~~~l 112 (194)
T d1l7da2 95 VLMCHLGALTNRPVVEAL 112 (194)
T ss_dssp EEEEECCGGGCHHHHHHH
T ss_pred EEEEecccccchhHHHHH
Confidence 9999876554 3444443
|
| >d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.44 E-value=0.18 Score=37.78 Aligned_cols=39 Identities=8% Similarity=0.159 Sum_probs=30.0
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHH
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRD 52 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~ 52 (274)
+|-|||.|..|..++.+|.+.+. ...+.+.+ |.+.+..+
T Consensus 3 ~IkViGvGGaG~n~vn~~~~~~~-~~v~~iai-nTD~~~L~ 41 (198)
T d1rq2a1 3 VIKVVGIGGGGVNAVNRMIEQGL-KGVEFIAI-NTDAQALL 41 (198)
T ss_dssp CEEEEEEHHHHHHHHHHHHHTTC-CSEEEEEE-ESCHHHHH
T ss_pred eEEEEEeCchHHHHHHHHHHcCC-CCceEEEE-cchHHHHh
Confidence 68899999999999999999885 33355666 76665544
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=88.42 E-value=0.16 Score=36.95 Aligned_cols=30 Identities=20% Similarity=0.165 Sum_probs=25.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEE
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTA 43 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~ 43 (274)
..+|.|||.|..|.-+|..|.+.|. ++++.
T Consensus 3 ~~~VvIIGgG~~G~e~A~~l~~~g~----~v~v~ 32 (185)
T d1q1ra1 3 NDNVVIVGTGLAGVEVAFGLRASGW----EGNIR 32 (185)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTC----CSEEE
T ss_pred CCCEEEECCcHHHHHHHHHHHHcCC----ceEEE
Confidence 4689999999999999999999987 55444
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.35 E-value=0.18 Score=40.82 Aligned_cols=33 Identities=9% Similarity=0.108 Sum_probs=28.2
Q ss_pred CCCeEEEE-cccHHHHHHHHHHHhCCCCCCCcEEEEeCC
Q 024016 9 ESFILGFI-GAGKMAESIAKGVAKSGVLPPDRICTAVHS 46 (274)
Q Consensus 9 ~~~~IgiI-G~G~mG~~~a~~L~~~g~~~~~~v~v~~~r 46 (274)
+.++|-|. |+|-+|+.++..|.+.|| +|++. +|
T Consensus 15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~----~V~~~-d~ 48 (341)
T d1sb8a_ 15 QPKVWLITGVAGFIGSNLLETLLKLDQ----KVVGL-DN 48 (341)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-EC
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC----EEEEE-EC
Confidence 45678777 569999999999999999 99988 65
|
| >d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Homoserine dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.33 E-value=0.14 Score=37.29 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=21.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSG 33 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g 33 (274)
++.+|+++|+|++|+.+++.|.+..
T Consensus 3 k~i~I~l~G~G~VG~~l~~~l~~~~ 27 (168)
T d1ebfa1 3 KVVNVAVIGAGVVGSAFLDQLLAMK 27 (168)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHCC
T ss_pred CEEEEEEEeCCHHHHHHHHHHHHhH
Confidence 4568999999999999999998754
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=88.24 E-value=0.15 Score=39.03 Aligned_cols=34 Identities=15% Similarity=0.234 Sum_probs=28.3
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH
Q 024016 12 ILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKR 50 (274)
Q Consensus 12 ~IgiI--G~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~ 50 (274)
|+.+| |.+.||.++|+.|.+.|+ +|.+. +|+++.
T Consensus 2 K~alITGas~GIG~aiA~~la~~Ga----~V~i~-~~~~~~ 37 (241)
T d1uaya_ 2 RSALVTGGASGLGRAAALALKARGY----RVVVL-DLRREG 37 (241)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTC----EEEEE-ESSCCS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEE-ECCccc
Confidence 45556 558999999999999999 99999 887653
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=87.95 E-value=0.31 Score=35.31 Aligned_cols=85 Identities=12% Similarity=0.090 Sum_probs=58.5
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchh----h-----ccCCCEEEEeeC
Q 024016 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNA----V-----VEYSDVVVFSVK 80 (274)
Q Consensus 11 ~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~----~-----~~~aDiIil~v~ 80 (274)
.+|-|-| +|.+|....+-....|. +|+.. .+++++.+.+.+.|+...-+..+ . -+..|+||-++-
T Consensus 25 ~~VLV~gaaGgVG~~avQlAk~~Ga----~Viat-~~s~~k~~~~~~lGad~vi~~~~~~~~~~~~~~~~gvd~vid~vg 99 (167)
T d1tt7a2 25 GSVLVTGATGGVGGIAVSMLNKRGY----DVVAS-TGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVG 99 (167)
T ss_dssp CCEEEESTTSHHHHHHHHHHHHHTC----CEEEE-ESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCC
T ss_pred CEEEEeCCcchHHHHHHHHHHHcCC----ceEEE-ecCHHHHHHHHhhcccceEeccchhchhhhcccCCCceEEEecCc
Confidence 3688887 59999988888888898 89988 88889999998888653322111 1 124688888876
Q ss_pred cccHHHHHHHhccccCCCCEEEEe
Q 024016 81 PQVVKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 81 ~~~~~~v~~~i~~~l~~~~~vis~ 104 (274)
.+.+.+.++.+ +++..++++
T Consensus 100 g~~~~~~~~~l----~~~G~iv~~ 119 (167)
T d1tt7a2 100 GKQLASLLSKI----QYGGSVAVS 119 (167)
T ss_dssp THHHHHHHTTE----EEEEEEEEC
T ss_pred HHHHHHHHHHh----ccCceEEEe
Confidence 66565555443 445556654
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=87.92 E-value=0.24 Score=39.77 Aligned_cols=32 Identities=9% Similarity=-0.020 Sum_probs=26.7
Q ss_pred CeEEEE-cccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 11 FILGFI-GAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 11 ~~IgiI-G~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
+++-|. |+|-+|+.++..|++.|| +|++. +|.
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g~----~V~~~-~r~ 34 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKGY----EVHGL-IRR 34 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ECC
T ss_pred CEEEEeCCccHHHHHHHHHHHHCcC----EEEEE-ECC
Confidence 345555 569999999999999999 99999 774
|
| >d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=87.91 E-value=0.29 Score=35.76 Aligned_cols=45 Identities=9% Similarity=0.158 Sum_probs=30.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC-HHHHHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN-LKRRDAFES 56 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~-~~~~~~l~~ 56 (274)
|||||=|.|++|+.+.+.++.... +.-+|...++.. .+....|.+
T Consensus 1 ikIgINGfGRIGR~v~R~~~~~~~-~~i~ivaINd~~~~~~~ayLlk 46 (172)
T d1rm4a1 1 LKVAINGFGRIGRNFLRCWHGRKD-SPLDVVVINDTGGVKQASHLLK 46 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCSS-CSEEEEEEECTTCHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEEcCCCCHHHHHHHHh
Confidence 589999999999999998886543 222566664543 244444544
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.74 E-value=0.43 Score=34.86 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=38.4
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCce
Q 024016 10 SFILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVK 60 (274)
Q Consensus 10 ~~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~ 60 (274)
..+|-|.| .|.+|+...+-....|. +|+.. .+++++.+.+.+.|+.
T Consensus 32 g~~VLI~gaaGGVG~~aiQlak~~Ga----~Viat-~~s~~k~~~~~~lGa~ 78 (176)
T d1xa0a2 32 RGPVLVTGATGGVGSLAVSMLAKRGY----TVEAS-TGKAAEHDYLRVLGAK 78 (176)
T ss_dssp GCCEEESSTTSHHHHHHHHHHHHTTC----CEEEE-ESCTTCHHHHHHTTCS
T ss_pred CCEEEEEeccchHHHHHHHHHHHcCC----ceEEe-cCchHHHHHHHhcccc
Confidence 35788887 69999988888888898 89988 8888998888887764
|
| >d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Trypanosoma cruzi [TaxId: 5693]
Probab=87.66 E-value=0.48 Score=35.12 Aligned_cols=46 Identities=13% Similarity=0.221 Sum_probs=33.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCC-CCcEEEEeCC--CHHHHHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLP-PDRICTAVHS--NLKRRDAFES 56 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~-~~~v~v~~~r--~~~~~~~l~~ 56 (274)
+||||=|.|++|+.+.+.+++.+... ..+|...++. +.+....|.+
T Consensus 3 ikigINGFGRIGR~vlR~~~~~~~~~~~i~iv~Ind~~~~~~~~ayLlk 51 (190)
T d1k3ta1 3 IKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMR 51 (190)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCBTTTEEEEEEEESCCCHHHHHHHHH
T ss_pred eEEEEECCChHHHHHHHHHHHcCCCCCCeEEEEEecCCCCHHHHHHHhh
Confidence 69999999999999999988765411 1245544344 5677777776
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=87.62 E-value=0.24 Score=40.91 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=27.3
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeC
Q 024016 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVH 45 (274)
Q Consensus 11 ~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~ 45 (274)
|||.|.| +|-+|+.+++.|++.|| +|+++ |
T Consensus 2 ~kILVTGatGfiG~~lv~~Ll~~g~----~V~~i-D 32 (393)
T d1i24a_ 2 SRVMVIGGDGYCGWATALHLSKKNY----EVCIV-D 32 (393)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-E
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcC----EEEEE-e
Confidence 7998885 59999999999999999 99988 6
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=87.50 E-value=0.96 Score=32.94 Aligned_cols=86 Identities=14% Similarity=0.166 Sum_probs=57.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----cCc----eec-cCchhh---ccCCCEEEE
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IGV----KVL-SDNNAV---VEYSDVVVF 77 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~----~g~----~~~-~~~~~~---~~~aDiIil 77 (274)
..+|.=||||.=..++. |.+.+. +|+.+ +.+++.++.+.+ .|+ ++. .+..+. ....|+||+
T Consensus 34 g~~VLDiGcGsG~~s~~--lA~~~~----~V~av-D~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~ 106 (186)
T d1l3ia_ 34 NDVAVDVGCGTGGVTLE--LAGRVR----RVYAI-DRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVV 106 (186)
T ss_dssp TCEEEEESCTTSHHHHH--HHTTSS----EEEEE-ESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEE
T ss_pred CCEEEEEECCeEccccc--ccccce----EEEEe-cCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEE
Confidence 45788898887555544 334444 89999 999987766554 343 322 232222 357899998
Q ss_pred eeCcccHHHHHHHhccccCCCCEEE
Q 024016 78 SVKPQVVKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 78 ~v~~~~~~~v~~~i~~~l~~~~~vi 102 (274)
.-+....++++..+...++|+..++
T Consensus 107 ~~~~~~~~~~~~~~~~~LkpgG~lv 131 (186)
T d1l3ia_ 107 GGSGGELQEILRIIKDKLKPGGRII 131 (186)
T ss_dssp SCCTTCHHHHHHHHHHTEEEEEEEE
T ss_pred eCccccchHHHHHHHHHhCcCCEEE
Confidence 8777778888888888888876655
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=87.39 E-value=0.96 Score=34.38 Aligned_cols=88 Identities=17% Similarity=0.163 Sum_probs=56.7
Q ss_pred CCCeEEEEccc--HHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----cC-ce-ec---cCch---hhccCCCE
Q 024016 9 ESFILGFIGAG--KMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IG-VK-VL---SDNN---AVVEYSDV 74 (274)
Q Consensus 9 ~~~~IgiIG~G--~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~----~g-~~-~~---~~~~---~~~~~aDi 74 (274)
..++|.=+|+| ..-..++...-..| .|+.+ +.++...+.+.+ .+ +. +. ..+. ......|+
T Consensus 73 pG~~VLDlGaGsG~~t~~la~~VG~~G-----~V~aV-D~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~ 146 (227)
T d1g8aa_ 73 PGKSVLYLGIASGTTASHVSDIVGWEG-----KIFGI-EFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDV 146 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHHHCTTS-----EEEEE-ESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEE
T ss_pred CCCEEEEeccCCCHHHHHHHHHhCCCC-----EEEEE-eCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEE
Confidence 45799999775 55566666554556 79999 999988877765 22 22 11 1111 22356688
Q ss_pred EEEeeC-cccHHHHHHHhccccCCCCEEE
Q 024016 75 VVFSVK-PQVVKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 75 Iil~v~-~~~~~~v~~~i~~~l~~~~~vi 102 (274)
|+.-++ +++...++..+...++||..++
T Consensus 147 i~~d~~~~~~~~~~l~~~~~~LkpgG~lv 175 (227)
T d1g8aa_ 147 IFEDVAQPTQAKILIDNAEVYLKRGGYGM 175 (227)
T ss_dssp EEECCCSTTHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEccccchHHHHHHHHHHhcccCCeEE
Confidence 887775 5667777877777777776554
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=87.37 E-value=0.57 Score=35.77 Aligned_cols=88 Identities=8% Similarity=0.066 Sum_probs=57.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----cC--cee-ccCchhh--ccCCCEEEEe--
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IG--VKV-LSDNNAV--VEYSDVVVFS-- 78 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~----~g--~~~-~~~~~~~--~~~aDiIil~-- 78 (274)
..+|-=||||. | .++..|.+.|. +|+.+ |.+++-++.+++ .| ++. ..|..+. -+..|+|+..
T Consensus 38 ~~~vLDiGCG~-G-~~~~~l~~~g~----~v~Gv-D~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~ 110 (246)
T d1y8ca_ 38 FDDYLDLACGT-G-NLTENLCPKFK----NTWAV-DLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLD 110 (246)
T ss_dssp TTEEEEETCTT-S-TTHHHHGGGSS----EEEEE-CSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTT
T ss_pred CCeEEEEeCcC-C-HHHHHHHHhCC----ccEee-ccchhhhhhccccccccCccceeeccchhhhcccccccccceeee
Confidence 35899999984 2 35667778888 99999 999987655443 33 332 2233222 2356988863
Q ss_pred ----e-CcccHHHHHHHhccccCCCCEEE-Ee
Q 024016 79 ----V-KPQVVKDVAMQIRPLLSRKKLLV-SV 104 (274)
Q Consensus 79 ----v-~~~~~~~v~~~i~~~l~~~~~vi-s~ 104 (274)
+ .+++...++..+..+|+||..+| ++
T Consensus 111 ~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 142 (246)
T d1y8ca_ 111 STNYIIDSDDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp GGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred eeeccCCHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 2 24567778888888888876555 44
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.95 E-value=0.31 Score=39.27 Aligned_cols=31 Identities=13% Similarity=0.089 Sum_probs=27.0
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCC
Q 024016 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHS 46 (274)
Q Consensus 11 ~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r 46 (274)
+||-|.| +|-+|+++++.|+++|+ +|++. |+
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~----~V~~l-d~ 34 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGY----LPVVI-DN 34 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTC----CEEEE-EC
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcC----EEEEE-EC
Confidence 5898885 69999999999999999 99887 53
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.90 E-value=2.7 Score=33.18 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=26.5
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 12 ILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 12 ~IgiI--G~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
|+.+| |.+.||.++|+.|.+.|+ +|.+. +|+.
T Consensus 8 KvalITGas~GIG~aiA~~la~~Ga----~Vvi~-d~~~ 41 (302)
T d1gz6a_ 8 RVVLVTGAGGGLGRAYALAFAERGA----LVVVN-DLGG 41 (302)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC----EEEEE-CCCB
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC----EEEEE-eCCc
Confidence 45566 557899999999999999 99998 7764
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=86.63 E-value=0.28 Score=33.13 Aligned_cols=35 Identities=9% Similarity=-0.021 Sum_probs=25.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
.+|.|||.|.+|.-+|..|.+-|. ...+|+++ .|.
T Consensus 21 ~~v~ivGgG~ig~E~A~~l~~l~~-~~~~Vtli-~~~ 55 (117)
T d1aoga2 21 RRVLTVGGGFISVEFAGIFNAYKP-KDGQVTLC-YRG 55 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHCC-TTCEEEEE-ESS
T ss_pred CeEEEECCcHHHHHHHHHhhhccc-CCcEEEEE-ecc
Confidence 589999999999999966554332 11279888 654
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=86.57 E-value=0.6 Score=31.74 Aligned_cols=77 Identities=16% Similarity=0.165 Sum_probs=53.8
Q ss_pred CCCeEEEEcccH-----------HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEE-E
Q 024016 9 ESFILGFIGAGK-----------MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVV-V 76 (274)
Q Consensus 9 ~~~~IgiIG~G~-----------mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiI-i 76 (274)
+.+||-|||.|. .+...++.|.+.|+ ++++. |.||+.. .+|.. -+|-+ |
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~----~~Ili-N~NPeTV----------std~d----~aD~lYf 63 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGY----ETIMV-NCNPETV----------STDYD----TSDRLYF 63 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTC----EEEEE-CCCTTSS----------TTSTT----SSSEEEC
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCC----eEEEE-ecChhhh----------hcChh----hcCceEE
Confidence 567999999984 67788999999999 99999 9898743 34432 35544 4
Q ss_pred EeeCcccHHHHHHHhccccCCCCEEEEecCCCC
Q 024016 77 FSVKPQVVKDVAMQIRPLLSRKKLLVSVAAGVK 109 (274)
Q Consensus 77 l~v~~~~~~~v~~~i~~~l~~~~~vis~~~g~~ 109 (274)
-++..+.+.+++..= +|+.+++.+ +|-.
T Consensus 64 eplt~e~v~~Ii~~E----~p~~ii~~~-GGQt 91 (121)
T d1a9xa4 64 EPVTLEDVLEIVRIE----KPKGVIVQY-GGQT 91 (121)
T ss_dssp CCCSHHHHHHHHHHH----CCSEEECSS-STHH
T ss_pred ccCCHHHHHHHHHHh----CCCEEEeeh-hhhh
Confidence 477777777777543 466565554 5533
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=86.56 E-value=0.7 Score=34.86 Aligned_cols=86 Identities=14% Similarity=0.116 Sum_probs=55.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCc--eeccCchhh---ccCCCEEEEeeC----
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGV--KVLSDNNAV---VEYSDVVVFSVK---- 80 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~--~~~~~~~~~---~~~aDiIil~v~---- 80 (274)
..||-=||||. +.++..|.+.|+ +|+.+ |.+++.++.+++.+. .+..+..++ -...|+|+..-.
T Consensus 43 ~~~vLDiGcG~--G~~~~~l~~~~~----~v~gi-D~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~ 115 (246)
T d2avna1 43 PCRVLDLGGGT--GKWSLFLQERGF----EVVLV-DPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSY 115 (246)
T ss_dssp CCEEEEETCTT--CHHHHHHHTTTC----EEEEE-ESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHH
T ss_pred CCEEEEECCCC--chhcccccccce----EEEEe-ecccccccccccccccccccccccccccccccccceeeecchhhh
Confidence 45899999983 335567778888 99999 999988887777442 222232222 134688875421
Q ss_pred cccHHHHHHHhccccCCCCEEE
Q 024016 81 PQVVKDVAMQIRPLLSRKKLLV 102 (274)
Q Consensus 81 ~~~~~~v~~~i~~~l~~~~~vi 102 (274)
-.+...+++++...++||..++
T Consensus 116 ~~d~~~~l~~i~r~Lk~gG~~i 137 (246)
T d2avna1 116 VENKDKAFSEIRRVLVPDGLLI 137 (246)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEE
T ss_pred hhhHHHHHHHHHhhcCcCcEEE
Confidence 1234567777777788876655
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.47 E-value=0.35 Score=38.43 Aligned_cols=33 Identities=18% Similarity=0.129 Sum_probs=28.1
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 11 ~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
+||-|.| +|-+|+.++..|++.|| +|++. +|..
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~----~V~~~-~r~~ 34 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGY----RVHGL-VARR 34 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEE-ECCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC----EEEEE-ECCC
Confidence 4677775 59999999999999999 99988 7754
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=86.00 E-value=0.19 Score=39.35 Aligned_cols=32 Identities=16% Similarity=0.258 Sum_probs=25.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 11 FILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
|||.|.|. |-+|+++++.|.+.|+ .|.+. .++
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g~----~v~~~-~~~ 33 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVGN----LIALD-VHS 33 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTSE----EEEEC-TTC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC----EEEEE-CCC
Confidence 68999975 9999999999999986 55554 443
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=85.92 E-value=0.32 Score=37.52 Aligned_cols=79 Identities=10% Similarity=0.158 Sum_probs=50.9
Q ss_pred CeEEEEcc-cHHHHHHHHHHHh---CCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchhhccCCCEEEEee---Cccc
Q 024016 11 FILGFIGA-GKMAESIAKGVAK---SGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAVVEYSDVVVFSV---KPQV 83 (274)
Q Consensus 11 ~~IgiIG~-G~mG~~~a~~L~~---~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~~~~~aDiIil~v---~~~~ 83 (274)
++|-|.|+ .-+|.++|+.|++ .|+ +|++. .|++++.+.+++.. -...++.++.+ .++.
T Consensus 3 KtilITGas~GIG~a~a~~l~~~a~~g~----~V~~~-~r~~~~~~~~~~~~----------~~~~~~~~~~~Dvs~~~~ 67 (248)
T d1snya_ 3 NSILITGCNRGLGLGLVKALLNLPQPPQ----HLFTT-CRNREQAKELEDLA----------KNHSNIHILEIDLRNFDA 67 (248)
T ss_dssp SEEEESCCSSHHHHHHHHHHHTSSSCCS----EEEEE-ESCTTSCHHHHHHH----------HHCTTEEEEECCTTCGGG
T ss_pred CEEEEeCCCCHHHHHHHHHHHHHHhCCC----EEEEE-ECCHHHHHHHHHHH----------hcCCcEEEEEEEeccHHH
Confidence 47877776 7899999999974 677 99999 99998877654310 01234555554 4566
Q ss_pred HHHHHHHhccc--cCCCCEEEEe
Q 024016 84 VKDVAMQIRPL--LSRKKLLVSV 104 (274)
Q Consensus 84 ~~~v~~~i~~~--l~~~~~vis~ 104 (274)
++++++.+... ..+=.++|..
T Consensus 68 v~~~~~~i~~~~~~~~iDiLvnN 90 (248)
T d1snya_ 68 YDKLVADIEGVTKDQGLNVLFNN 90 (248)
T ss_dssp HHHHHHHHHHHHGGGCCSEEEEC
T ss_pred HHHHHhhhHHHhhcCCcceEEee
Confidence 88887766431 1122356654
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=85.77 E-value=0.68 Score=37.26 Aligned_cols=34 Identities=29% Similarity=0.256 Sum_probs=28.2
Q ss_pred eEEEE-ccc---HHHHHHHHHHHhCCCCCCCcEEEEeCCCHHH
Q 024016 12 ILGFI-GAG---KMAESIAKGVAKSGVLPPDRICTAVHSNLKR 50 (274)
Q Consensus 12 ~IgiI-G~G---~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~ 50 (274)
||++| |.| -+|.++|+.|.++|. +|.+. .++...
T Consensus 3 kVAlITGaa~s~GIG~aiA~~la~~GA----~V~i~-~~~~~~ 40 (329)
T d1uh5a_ 3 DICFIAGIGDTNGYGWGIAKELSKRNV----KIIFG-IWPPVY 40 (329)
T ss_dssp CEEEEECCSSSSSHHHHHHHHHHHTTC----EEEEE-ECGGGH
T ss_pred cEEEEeCCCCCChHHHHHHHHHHHcCC----EEEEE-eCchhh
Confidence 67777 866 699999999999998 99888 666543
|
| >d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Human(Homo sapiens), liver isoform [TaxId: 9606]
Probab=85.63 E-value=0.97 Score=32.69 Aligned_cols=43 Identities=16% Similarity=0.209 Sum_probs=32.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC--CHHHHHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS--NLKRRDAFES 56 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r--~~~~~~~l~~ 56 (274)
.||||=|.|++|+.+.+.+++... .++...+++ +++....|.+
T Consensus 2 ikIgINGFGRIGR~v~R~~~~~~~---~~ivaINd~~~~~~~~ayLlk 46 (169)
T d1u8fo1 2 VKVGVNGFGRIGRLVTRAAFNSGK---VDIVAINDPFIDLNYMVYMFQ 46 (169)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCS---SEEEEEECSSSCHHHHHHHHH
T ss_pred cEEEEECCcHHHHHHHHHHHHCCC---cEEEEecCCCccHHHHHHHHh
Confidence 589999999999999998887653 277777564 4566666666
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=85.21 E-value=0.6 Score=31.30 Aligned_cols=34 Identities=15% Similarity=0.011 Sum_probs=26.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHh---CCCCCCCcEEEEeCCCH
Q 024016 10 SFILGFIGAGKMAESIAKGVAK---SGVLPPDRICTAVHSNL 48 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~---~g~~~~~~v~v~~~r~~ 48 (274)
.++|.|||.|..|.-+|..|.+ .|. +|+++ .|.+
T Consensus 18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~----~Vtli-~~~~ 54 (117)
T d1feca2 18 PKRALCVGGGYISIEFAGIFNAYKARGG----QVDLA-YRGD 54 (117)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHSCTTC----EEEEE-ESSS
T ss_pred CCeEEEECCChHHHHHHHHhHhhccccc----cccee-cccc
Confidence 3689999999999999976544 365 89888 6643
|
| >d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=84.98 E-value=1.1 Score=32.35 Aligned_cols=44 Identities=9% Similarity=0.101 Sum_probs=31.1
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC-CHHHHHHHHH
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFES 56 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r-~~~~~~~l~~ 56 (274)
||||=|.|++|+.+.+.+++... +..+|...++. +.+....|.+
T Consensus 2 kIgINGfGRIGR~v~R~~~~~~~-~~i~vvaINd~~~~e~~ayLlk 46 (169)
T d1hdgo1 2 RVAINGFGRIGRLVYRIIYERKN-PDIEVVAINDLTDTKTLAHLLK 46 (169)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTC-TTCEEEEEECSSCHHHHHHHHH
T ss_pred EEEEECCChHHHHHHHHHHhccC-CCEEEEEeccCccHHHHHHHHh
Confidence 89999999999999999986432 12267666454 4455556655
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=84.84 E-value=0.3 Score=37.38 Aligned_cols=34 Identities=15% Similarity=0.143 Sum_probs=29.2
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH
Q 024016 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLK 49 (274)
Q Consensus 11 ~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~ 49 (274)
-||-|.| .|.+|.++++.|.++|+ +|++. +|+++
T Consensus 3 gkVlITGas~GIG~aia~~l~~~G~----~V~~~-~~~~~ 37 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKNGY----TVLNI-DLSAN 37 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTE----EEEEE-ESSCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-ECCch
Confidence 3787775 59999999999999999 99999 88764
|
| >d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.75 E-value=0.84 Score=33.98 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=29.4
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHH
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRR 51 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~ 51 (274)
+|-|||.|.-|..++.+|.+.+. ..-++... |.+.+.+
T Consensus 3 ~IkViGvGGaG~n~v~~~~~~~~-~~v~~iai-nTD~~~L 40 (198)
T d1ofua1 3 VIKVIGVGGGGGNAVNHMAKNNV-EGVEFICA-NTDAQAL 40 (198)
T ss_dssp CEEEEEEHHHHHHHHHHHHHTTC-CSEEEEEE-ESBTGGG
T ss_pred eEEEEEECchHHHHHHHHHHcCC-CCeEEEEE-eCcHHHH
Confidence 68899999999999999999885 33355566 6665544
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=84.56 E-value=0.4 Score=35.24 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=29.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
..+|.|||.|.-|..-|..+.+.|. ++.++ ++..
T Consensus 5 ~~~VvIIGgGpaGl~aA~~~ar~g~----~v~vi-e~~~ 38 (192)
T d1vdca1 5 NTRLCIVGSGPAAHTAAIYAARAEL----KPLLF-EGWM 38 (192)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC----CCEEE-CCSS
T ss_pred cceEEEECCCHHHHHHHHHHHHcCC----cEEEE-Eeec
Confidence 3689999999999999999999998 88888 7543
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=84.54 E-value=0.41 Score=35.69 Aligned_cols=31 Identities=16% Similarity=0.071 Sum_probs=28.3
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
-|.|||+|.-|...|..+.+.|. +|.++ +++
T Consensus 4 DvvVIG~G~aG~~aA~~a~~~G~----kV~ii-E~~ 34 (217)
T d1gesa1 4 DYIAIGGGSGGIASINRAAMYGQ----KCALI-EAK 34 (217)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTC----CEEEE-ESS
T ss_pred CEEEECCCHHHHHHHHHHHHCCC----EEEEE-ecc
Confidence 47899999999999999999998 99999 765
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=84.35 E-value=0.33 Score=35.58 Aligned_cols=35 Identities=14% Similarity=0.079 Sum_probs=30.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
+..+|.|||.|+-|..-|..+.+.|. +|+++ +|..
T Consensus 4 k~~dVvIIGGGpaGl~AA~~~ar~g~----~v~ii-e~~~ 38 (190)
T d1trba1 4 KHSKLLILGSGPAGYTAAVYAARANL----QPVLI-TGME 38 (190)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTTC----CCEEE-CCSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC----ceEEE-Eeec
Confidence 34589999999999999999999998 89998 7653
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=84.15 E-value=0.3 Score=35.48 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=22.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGV 34 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~ 34 (274)
.+|.|||.|..|.-+|..|.+.|+
T Consensus 4 a~VvIIGgG~~G~e~A~~l~~~g~ 27 (183)
T d1d7ya1 4 APVVVLGAGLASVSFVAELRQAGY 27 (183)
T ss_dssp SSEEEECCSHHHHHHHHHHHHHTC
T ss_pred CCEEEECccHHHHHHHHHHHhcCC
Confidence 469999999999999999999886
|
| >d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Domestic pigeon (Columba livia) [TaxId: 8932]
Probab=83.90 E-value=0.54 Score=37.38 Aligned_cols=122 Identities=16% Similarity=0.221 Sum_probs=64.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC----CCCCC----CcEEEEeCCCH----HH--HHHHHH-c--CceeccCchhhcc
Q 024016 8 AESFILGFIGAGKMAESIAKGVAKS----GVLPP----DRICTAVHSNL----KR--RDAFES-I--GVKVLSDNNAVVE 70 (274)
Q Consensus 8 ~~~~~IgiIG~G~mG~~~a~~L~~~----g~~~~----~~v~v~~~r~~----~~--~~~l~~-~--g~~~~~~~~~~~~ 70 (274)
.+..||.|.|+|.-|..++..|... |. +. .+++++ ||.- ++ ....++ . ...-..+..++++
T Consensus 23 l~d~kiV~~GAGsAg~gia~~l~~~~~~~G~-~~~~a~~~i~l~-D~kGlv~~~R~~l~~~k~~~a~~~~~~~~l~~~i~ 100 (298)
T d1gq2a1 23 LSDHTVLFQGAGEAALGIANLIVMAMQKEGV-SKEEAIKRIWMV-DSKGLIVKGRASLTPEKEHFAHEHCEMKNLEDIVK 100 (298)
T ss_dssp GGGCCEEEECCSHHHHHHHHHHHHHHHHHTC-CHHHHHTTEEEE-ETTEECBTTCSSCCTTGGGGCBSCCCCCCHHHHHH
T ss_pred HHHcEEEEECccHHHHHHHHHHHHHHHHcCC-ChhhccceEEEE-eCCCcccCCCcccCHHHHHHHHHhhhhhhhHHHhh
Confidence 4557999999999999998887643 32 10 267777 6532 11 111111 0 0111123344443
Q ss_pred --CCCEEEEee-Ccc-cHHHHHHHhccccCCCCEEEEecCCCC-----HHHHHHhhCC-CceEEEcCCcHHh
Q 024016 71 --YSDVVVFSV-KPQ-VVKDVAMQIRPLLSRKKLLVSVAAGVK-----LKDLQEWTGH-SRFIRVMPNTPSA 132 (274)
Q Consensus 71 --~aDiIil~v-~~~-~~~~v~~~i~~~l~~~~~vis~~~g~~-----~~~l~~~~~~-~~~~~~~p~~~~~ 132 (274)
+.+++|-+. .+. .-+++++.+.. ..+..+|.-++++.+ .++.-+|..+ +-+....|..|..
T Consensus 101 ~vkptvliG~s~~~g~ft~evv~~ma~-~~~~PIIFaLSNPt~~~E~~~~~a~~wt~G~ai~AsGspf~pv~ 171 (298)
T d1gq2a1 101 DIKPTVLIGVAAIGGAFTQQILQDMAA-FNKRPIIFALSNPTSKAECTAEQLYKYTEGRGIFASGSPFDPVT 171 (298)
T ss_dssp HHCCSEEEECSCCTTCSCHHHHHHHHH-HCSSCEEEECCSSGGGCSSCHHHHHHHTTTCCEEEESSCCCCEE
T ss_pred ccChheeEecccccCcCCHHHHHHHHh-hCCCCEEEEccCCCCcCCCCHHHHhhhcccceEEeecCCCCCeE
Confidence 355555554 343 35677776654 356778888887764 2344445443 2233334444443
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.85 E-value=0.9 Score=35.45 Aligned_cols=89 Identities=19% Similarity=0.188 Sum_probs=54.3
Q ss_pred CeEEEEcc--cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----c------Ccee-ccCchhh---ccCCCE
Q 024016 11 FILGFIGA--GKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----I------GVKV-LSDNNAV---VEYSDV 74 (274)
Q Consensus 11 ~~IgiIG~--G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~----~------g~~~-~~~~~~~---~~~aDi 74 (274)
++|.=+|+ |.+...+|+.+-..| .|+.+ +.+++.++.+.+ . .+.. ..+..+. -...|.
T Consensus 98 ~~VLE~G~GsG~lt~~La~~vgp~G-----~V~~~-d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fDa 171 (264)
T d1i9ga_ 98 ARVLEAGAGSGALTLSLLRAVGPAG-----QVISY-EQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDR 171 (264)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTS-----EEEEE-CSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEE
T ss_pred CEEEecCcCCcHHHHHHHHhhCCCc-----EEEEe-cCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCcce
Confidence 57777755 677777887776677 69999 999988766554 1 1221 1222221 135799
Q ss_pred EEEeeC-cccHHHHHHHhccccCCCCEEEEecCCC
Q 024016 75 VVFSVK-PQVVKDVAMQIRPLLSRKKLLVSVAAGV 108 (274)
Q Consensus 75 Iil~v~-~~~~~~v~~~i~~~l~~~~~vis~~~g~ 108 (274)
||+-+| |..+ +..+...++||..++..+..+
T Consensus 172 V~ldlp~P~~~---l~~~~~~LkpGG~lv~~~P~i 203 (264)
T d1i9ga_ 172 AVLDMLAPWEV---LDAVSRLLVAGGVLMVYVATV 203 (264)
T ss_dssp EEEESSCGGGG---HHHHHHHEEEEEEEEEEESSH
T ss_pred EEEecCCHHHH---HHHHHhccCCCCEEEEEeCcc
Confidence 999886 3332 333344456777777655444
|
| >d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: 10-formyltetrahydrofolate dehydrogenase domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.53 E-value=0.58 Score=34.98 Aligned_cols=29 Identities=14% Similarity=0.278 Sum_probs=26.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEE
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTA 43 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~ 43 (274)
|||.|+|.+..|......|.++|| +|...
T Consensus 1 MkI~~~G~~~~~~~~l~~L~~~~~----~i~~V 29 (203)
T d2bw0a2 1 MKIAVIGQSLFGQEVYCHLRKEGH----EVVGV 29 (203)
T ss_dssp CEEEEECCHHHHHHHHHHHHHTTC----EEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHCCC----cEEEE
Confidence 799999999999999999999999 87644
|
| >d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=83.31 E-value=0.87 Score=29.20 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=28.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
|||-|||.|.=-.+|+..|.++.+ +++++ .-|+
T Consensus 1 MkVLviGsGgREHAia~~l~~s~~----~v~~~-pGN~ 33 (90)
T d1vkza2 1 VRVHILGSGGREHAIGWAFAKQGY----EVHFY-PGNA 33 (90)
T ss_dssp CEEEEEECSHHHHHHHHHHHHTTC----EEEEE-ECCT
T ss_pred CEEEEECCCHHHHHHHHHHhcCCC----eEEEe-cCCc
Confidence 799999999999999999998876 88877 4444
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.27 E-value=0.53 Score=35.94 Aligned_cols=35 Identities=6% Similarity=0.045 Sum_probs=29.3
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCCCCCcEEEEeCCCHH
Q 024016 10 SFILGFIGA-GKMAESIAKGVAKSGVLPPDRICTAVHSNLK 49 (274)
Q Consensus 10 ~~~IgiIG~-G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~ 49 (274)
.++|-|.|+ |.+|.++++.|.++|+ +|.+. ++++.
T Consensus 2 gK~vlITGas~GIG~a~a~~l~~~G~----~V~~~-~~~~~ 37 (236)
T d1dhra_ 2 ARRVLVYGGRGALGSRCVQAFRARNW----WVASI-DVVEN 37 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTC----EEEEE-ESSCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC----EEEEE-eCCcc
Confidence 467888866 7899999999999999 99888 77643
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=83.05 E-value=0.54 Score=37.28 Aligned_cols=30 Identities=17% Similarity=0.247 Sum_probs=26.1
Q ss_pred eEEEE-cccHHHHHHHHHHHhCCCCCCCcEEEEeCC
Q 024016 12 ILGFI-GAGKMAESIAKGVAKSGVLPPDRICTAVHS 46 (274)
Q Consensus 12 ~IgiI-G~G~mG~~~a~~L~~~g~~~~~~v~v~~~r 46 (274)
||-|. |+|-+|+.+++.|++.|| +|+++ ++
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~----~V~~i-d~ 32 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGI----DLIVF-DN 32 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC----EEEEE-EC
T ss_pred EEEEECCCcHHHHHHHHHHHHCcC----EEEEE-EC
Confidence 78777 569999999999999999 99987 53
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=82.78 E-value=0.63 Score=33.71 Aligned_cols=40 Identities=10% Similarity=-0.021 Sum_probs=32.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES 56 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~ 56 (274)
..||-.||||.=- .+..|.+.|+ +|+.+ |.++.-++.+.+
T Consensus 21 ~~rvLd~GCG~G~--~a~~la~~G~----~V~gv-D~S~~~i~~a~~ 60 (201)
T d1pjza_ 21 GARVLVPLCGKSQ--DMSWLSGQGY----HVVGA-ELSEAAVERYFT 60 (201)
T ss_dssp TCEEEETTTCCSH--HHHHHHHHCC----EEEEE-EECHHHHHHHHH
T ss_pred CCEEEEecCcCCH--HHHHHHHcCC----ceEee-cccHHHHHHHHH
Confidence 4699999998753 4556778899 99999 999988777665
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=82.62 E-value=0.6 Score=36.81 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=29.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
.-|.|||.|.-|.+.|..|.+.|+ +|.+. ++.+
T Consensus 17 ~DVlVIG~G~aGl~aA~~la~~G~----~V~lv-EK~~ 49 (308)
T d1y0pa2 17 VDVVVVGSGGAGFSAAISATDSGA----KVILI-EKEP 49 (308)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTC----CEEEE-CSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCC----cEEEE-ecCC
Confidence 459999999999999999999998 99999 7754
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=82.18 E-value=0.51 Score=36.84 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=28.4
Q ss_pred eEEEEcccHHHHHHHHHHHh-CCCCCCCcEEEEeCCCH
Q 024016 12 ILGFIGAGKMAESIAKGVAK-SGVLPPDRICTAVHSNL 48 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~-~g~~~~~~v~v~~~r~~ 48 (274)
-|.|||+|.-|...|..|.+ .|+ +|.++ ++.+
T Consensus 35 DViVIGaGpaGL~aA~~LA~~~G~----~V~vl-E~~~ 67 (278)
T d1rp0a1 35 DVVVVGAGSAGLSAAYEISKNPNV----QVAII-EQSV 67 (278)
T ss_dssp EEEEECCSHHHHHHHHHHHTSTTS----CEEEE-ESSS
T ss_pred CEEEECCCHHHHHHHHHHHHccCC----eEEEE-ecCC
Confidence 38999999999999999987 599 99999 8765
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=82.12 E-value=0.64 Score=37.44 Aligned_cols=31 Identities=13% Similarity=0.346 Sum_probs=28.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS 46 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r 46 (274)
.-+.|||.|.=|..+|.+|.++|+ +|.+. .+
T Consensus 5 yDviIVGsG~aG~v~A~~La~~G~----kVlvL-Ea 35 (379)
T d2f5va1 5 YDVVIVGSGPIGCTYARELVGAGY----KVAMF-DI 35 (379)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTC----EEEEE-CS
T ss_pred ccEEEECcCHHHHHHHHHHhhCCC----eEEEE-ec
Confidence 358899999999999999999999 99999 65
|
| >d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.11 E-value=2.1 Score=30.63 Aligned_cols=67 Identities=19% Similarity=0.270 Sum_probs=43.5
Q ss_pred CCCeEEEEcccH-HHHHHHHHHHhCCCCCCCcEEEEeCCC-----HHHHHH----HHHcC--ceeccCchhhccCCCEEE
Q 024016 9 ESFILGFIGAGK-MAESIAKGVAKSGVLPPDRICTAVHSN-----LKRRDA----FESIG--VKVLSDNNAVVEYSDVVV 76 (274)
Q Consensus 9 ~~~~IgiIG~G~-mG~~~a~~L~~~g~~~~~~v~v~~~r~-----~~~~~~----l~~~g--~~~~~~~~~~~~~aDiIi 76 (274)
+..||+|+|-|+ +-.+++..+.+-|. ++++. ... ++-.+. +.+.| +....+..+++.++|+|.
T Consensus 3 ~gl~I~~vGD~~nV~~Sli~~~~~~g~----~~~~~-~P~~~~p~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~advi~ 77 (170)
T d1otha2 3 KGLTLSWIGDGNNILHSIMMSAAKFGM----HLQAA-TPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLI 77 (170)
T ss_dssp TTCEEEEESCSSHHHHHHHTTTGGGTC----EEEEE-CCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEE
T ss_pred CCCEEEEEcCchhHHHHHHHHHHHcCC----EEEEE-eccccCCchHHHHHHHHHHhccCCEEEEEcCHHHHHhhhhhee
Confidence 568999999863 44555555555676 88877 542 222222 22234 456788899999999999
Q ss_pred EeeC
Q 024016 77 FSVK 80 (274)
Q Consensus 77 l~v~ 80 (274)
..+-
T Consensus 78 ~~~~ 81 (170)
T d1otha2 78 TDTW 81 (170)
T ss_dssp ECCS
T ss_pred eece
Confidence 8763
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.88 E-value=0.73 Score=33.73 Aligned_cols=46 Identities=15% Similarity=0.121 Sum_probs=31.8
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH-cCce
Q 024016 11 FILGFIG-AGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES-IGVK 60 (274)
Q Consensus 11 ~~IgiIG-~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~-~g~~ 60 (274)
.+|-|.| +|.+|+..++-....|. ..|+.. .+++++...+.+ .|..
T Consensus 32 etVLI~gaaGgVG~~aiQlak~~Ga---~~vi~~-~~~~e~~~~l~~~~gad 79 (187)
T d1vj1a2 32 QTMVVSGAAGACGSLAGQIGHLLGC---SRVVGI-CGTQEKCLFLTSELGFD 79 (187)
T ss_dssp CEEEESSTTSTTGGGHHHHHHHTTC---SEEEEE-ESSHHHHHHHHHHSCCS
T ss_pred CEEEEECCCchhhHHHHHHHHHcCC---cceecc-cchHHHHhhhhhcccce
Confidence 4687877 59999988877777775 145555 667777666654 5653
|
| >d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=81.82 E-value=1.5 Score=31.48 Aligned_cols=42 Identities=12% Similarity=0.125 Sum_probs=32.8
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC--CHHHHHHHHH
Q 024016 12 ILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS--NLKRRDAFES 56 (274)
Q Consensus 12 ~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r--~~~~~~~l~~ 56 (274)
||||=|.|++|+.+.+.+++... .+|...+++ +.+....|.+
T Consensus 2 kigINGfGRIGR~v~R~~~~~~~---~~iv~INd~~~d~~~~ayLlk 45 (166)
T d2b4ro1 2 KLGINGFGRIGRLVFRAAFGRKD---IEVVAINDPFMDLNHLCYLLK 45 (166)
T ss_dssp EEEEECCSHHHHHHHHHHHTCSS---EEEEEEECTTCCHHHHHHHHH
T ss_pred eEEEECCCHHHHHHHHHHhhCCC---cEEEEECCCCCChHHhhhhhh
Confidence 89999999999999999987532 277777554 5677777776
|
| >d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Methionyl-tRNAfmet formyltransferase species: Escherichia coli [TaxId: 562]
Probab=81.76 E-value=0.87 Score=33.93 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=28.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC
Q 024016 9 ESFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS 46 (274)
Q Consensus 9 ~~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r 46 (274)
+.|||.|+|.+..+..+.+.|.++|+ +|...+.+
T Consensus 2 ~~mKI~f~G~~~~~~~~L~~L~~~~~----~i~~Vit~ 35 (206)
T d1fmta2 2 ESLRIIFAGTPDFAARHLDALLSSGH----NVVGVFTQ 35 (206)
T ss_dssp CCCEEEEEECSHHHHHHHHHHHHTTC----EEEEEECC
T ss_pred CCcEEEEECCCHHHHHHHHHHHhCCC----CEEEEEeC
Confidence 46899999999999999999999998 76543244
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=81.75 E-value=1.3 Score=31.21 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=27.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 10 SFILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 10 ~~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
..||.|||.|+.|.=.|..+.+.|. ..|+++ .|.
T Consensus 45 ~~kVvVIGGGdtA~D~A~~a~r~GA---~~V~vi-~rr 78 (153)
T d1gtea3 45 RGAVIVLGAGDTAFDCATSALRCGA---RRVFLV-FRK 78 (153)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHTTC---SEEEEE-CSS
T ss_pred CCEEEEECCChhHHHHHHHHHHcCC---cceeEE-EeC
Confidence 4589999999999999999999885 257777 443
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=81.57 E-value=1.3 Score=32.22 Aligned_cols=84 Identities=11% Similarity=0.137 Sum_probs=53.3
Q ss_pred eEEEE-cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHHcCceeccCchh-----hcc--CCCEEEEeeCccc
Q 024016 12 ILGFI-GAGKMAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNA-----VVE--YSDVVVFSVKPQV 83 (274)
Q Consensus 12 ~IgiI-G~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~~g~~~~~~~~~-----~~~--~aDiIil~v~~~~ 83 (274)
+|.|. |.|.+|..-.+-....|. +|++. .+++++.+.+.+.|+..+-+..+ .+. ..|.++=+|-...
T Consensus 34 ~vlV~gasGGVG~~aiQlAk~~Ga----~Via~-~~~~~k~~~~~~lGad~vi~~~~~~~~~~l~~~~~~~vvD~Vgg~~ 108 (177)
T d1o89a2 34 EIVVTGASGGVGSTAVALLHKLGY----QVVAV-SGRESTHEYLKSLGASRVLPRDEFAESRPLEKQVWAGAIDTVGDKV 108 (177)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTC----CEEEE-ESCGGGHHHHHHHTEEEEEEGGGSSSCCSSCCCCEEEEEESSCHHH
T ss_pred cEEEEEccccchHHHHHHHHHcCC----CeEEE-ecchhHHHHHHhhccccccccccHHHHHHHHhhcCCeeEEEcchHH
Confidence 56665 569999988888888998 99988 89999998888888753322111 111 2466665554433
Q ss_pred HHHHHHHhccccCCCCEEEEe
Q 024016 84 VKDVAMQIRPLLSRKKLLVSV 104 (274)
Q Consensus 84 ~~~v~~~i~~~l~~~~~vis~ 104 (274)
+...+ +.++++-.++++
T Consensus 109 ~~~~l----~~l~~~Griv~~ 125 (177)
T d1o89a2 109 LAKVL----AQMNYGGCVAAC 125 (177)
T ss_dssp HHHHH----HTEEEEEEEEEC
T ss_pred HHHHH----HHhccccceEee
Confidence 33333 334455556654
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.33 E-value=0.6 Score=34.93 Aligned_cols=32 Identities=19% Similarity=0.173 Sum_probs=28.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
.-|.|||+|.-|..-|..+.+.|+ +|.++ ++.
T Consensus 6 yDviVIG~GpAGl~aA~~aa~~G~----kV~li-e~~ 37 (233)
T d1v59a1 6 HDVVIIGGGPAGYVAAIKAAQLGF----NTACV-EKR 37 (233)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTC----CEEEE-ESS
T ss_pred cCEEEECCCHHHHHHHHHHHHCCC----cEEEE-Eec
Confidence 458999999999999999999999 99999 754
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.89 E-value=0.86 Score=31.50 Aligned_cols=32 Identities=16% Similarity=0.287 Sum_probs=25.8
Q ss_pred CeEEEEcccHHHHHHHHHHH----hCCCCCCCcEEEEeCCC
Q 024016 11 FILGFIGAGKMAESIAKGVA----KSGVLPPDRICTAVHSN 47 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~----~~g~~~~~~v~v~~~r~ 47 (274)
++|.|||.|..|.-+|..|. +.|. +|++. .++
T Consensus 38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~----~Vt~i-~~~ 73 (137)
T d1m6ia2 38 KSITIIGGGFLGSELACALGRKARALGT----EVIQL-FPE 73 (137)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHHHHHTC----EEEEE-CSS
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHhcCC----EEEEe-ccc
Confidence 58999999999998888874 3576 88887 553
|
| >d1pjca2 c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: L-alanine dehydrogenase-like domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=80.83 E-value=2.3 Score=31.26 Aligned_cols=79 Identities=11% Similarity=0.152 Sum_probs=48.5
Q ss_pred HHHHHHhCCCCCCCcEEEEeCCCHHH----HHHHHHcCceeccCchhhccCCCEEEEeeCcccHHHHHHHhccccCCCCE
Q 024016 25 IAKGVAKSGVLPPDRICTAVHSNLKR----RDAFESIGVKVLSDNNAVVEYSDVVVFSVKPQVVKDVAMQIRPLLSRKKL 100 (274)
Q Consensus 25 ~a~~L~~~g~~~~~~v~v~~~r~~~~----~~~l~~~g~~~~~~~~~~~~~aDiIil~v~~~~~~~v~~~i~~~l~~~~~ 100 (274)
-++.|.+.|| +|++= .---.. =+...+.|+++.++..++. ++|+|+-.-+|..- + ...++++++
T Consensus 22 ~vkkl~~~G~----~V~VE-~gaG~~a~fsD~~Y~~aGa~i~~~~~~~~-~~diilkv~~p~~~-----e-~~~lk~~~~ 89 (193)
T d1pjca2 22 SVRTLVEAGH----TVFIE-TQAGIGAGFADQDYVQAGAQVVPSAKDAW-SREMVVKVKEPLPA-----E-YDLMQKDQL 89 (193)
T ss_dssp HHHHHHTTTC----EEEEE-TTTTGGGTCCHHHHHHHTCEEESSHHHHH-TSSEEECSSCCCGG-----G-GGGCCTTCE
T ss_pred HHHHHHHCCC----EEEEE-cCcccccCCCHHHHHhhcceeeecccccc-ccceEEEeccCCHH-----H-HHhhhcCce
Confidence 4677888998 88766 211111 1344557998887766665 68977644444431 2 245789999
Q ss_pred EEEecCCCC-HHHHHH
Q 024016 101 LVSVAAGVK-LKDLQE 115 (274)
Q Consensus 101 vis~~~g~~-~~~l~~ 115 (274)
+|+...... .+.++.
T Consensus 90 li~~l~p~~~~ell~~ 105 (193)
T d1pjca2 90 LFTYLHLAAARELTEQ 105 (193)
T ss_dssp EEECCCGGGCHHHHHH
T ss_pred EEEecCcccchHHHHH
Confidence 998866543 333443
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=80.83 E-value=0.67 Score=37.69 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=21.9
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCC
Q 024016 11 FILGFIG-AGKMAESIAKGVAKSGV 34 (274)
Q Consensus 11 ~~IgiIG-~G~mG~~~a~~L~~~g~ 34 (274)
|||-|.| +|-+|+.++..|+++|+
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~ 25 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQ 25 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCS
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC
Confidence 6898995 59999999999999998
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=80.76 E-value=0.61 Score=34.64 Aligned_cols=32 Identities=19% Similarity=0.118 Sum_probs=28.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCCC
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHSN 47 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~ 47 (274)
.=|.|||.|.-|...|..+.+.|. +|.++ +++
T Consensus 4 yDvvVIGgGpaGl~aA~~aa~~G~----kV~vi-e~~ 35 (221)
T d1dxla1 4 NDVVIIGGGPGGYVAAIKAAQLGF----KTTCI-EKR 35 (221)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHTC----CEEEE-ECS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC----cEEEE-Eec
Confidence 458899999999999999999998 99999 764
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=80.68 E-value=1.8 Score=33.60 Aligned_cols=89 Identities=17% Similarity=0.158 Sum_probs=51.4
Q ss_pred CCeEEEEcccH--HHHHHHHHHHhCCCCCCCcEEEEeCCCHHHHHHHHH----cCc----ee-ccCchhh--ccCCCEEE
Q 024016 10 SFILGFIGAGK--MAESIAKGVAKSGVLPPDRICTAVHSNLKRRDAFES----IGV----KV-LSDNNAV--VEYSDVVV 76 (274)
Q Consensus 10 ~~~IgiIG~G~--mG~~~a~~L~~~g~~~~~~v~v~~~r~~~~~~~l~~----~g~----~~-~~~~~~~--~~~aDiIi 76 (274)
.++|.=+|+|. +...+|+.+...| +|+.+ +.+++.++.+.+ .|. .+ ..+..+. ...+|.||
T Consensus 104 G~~VLDiG~GsG~lt~~lA~~~~~~G-----~V~~v-D~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~~~~D~V~ 177 (266)
T d1o54a_ 104 GDRIIDTGVGSGAMCAVLARAVGSSG-----KVFAY-EKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALF 177 (266)
T ss_dssp TCEEEEECCTTSHHHHHHHHHTTTTC-----EEEEE-CCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEE
T ss_pred CCEEEECCCCCCHHHHHHHHHhCCCc-----EEEEE-eCCHHHHHHHHHHHHHhccccCcEEEeccccccccccceeeeE
Confidence 46888887655 4455555444445 79999 999988766554 342 11 1222222 23578888
Q ss_pred EeeCcccHHHHHHHhccccCCCCEEEEecC
Q 024016 77 FSVKPQVVKDVAMQIRPLLSRKKLLVSVAA 106 (274)
Q Consensus 77 l~v~~~~~~~v~~~i~~~l~~~~~vis~~~ 106 (274)
+-+|+. .++++.+...|+||..++..+.
T Consensus 178 ~d~p~p--~~~l~~~~~~LKpGG~lv~~~P 205 (266)
T d1o54a_ 178 LDVPDP--WNYIDKCWEALKGGGRFATVCP 205 (266)
T ss_dssp ECCSCG--GGTHHHHHHHEEEEEEEEEEES
T ss_pred ecCCCH--HHHHHHHHhhcCCCCEEEEEeC
Confidence 887632 1233444444567767665543
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=80.46 E-value=0.31 Score=38.95 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=21.8
Q ss_pred CeEEEE-cccHHHHHHHHHHHhCCC
Q 024016 11 FILGFI-GAGKMAESIAKGVAKSGV 34 (274)
Q Consensus 11 ~~IgiI-G~G~mG~~~a~~L~~~g~ 34 (274)
|||-|. |+|-+|+.+++.|++.|+
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~ 25 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAY 25 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC
Confidence 689888 569999999999999997
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=80.28 E-value=0.81 Score=32.20 Aligned_cols=32 Identities=19% Similarity=0.164 Sum_probs=27.4
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCCCCCcEEEEeCCCH
Q 024016 12 ILGFI--GAGKMAESIAKGVAKSGVLPPDRICTAVHSNL 48 (274)
Q Consensus 12 ~IgiI--G~G~mG~~~a~~L~~~g~~~~~~v~v~~~r~~ 48 (274)
++.|+ |.|.+|..+|..|.+.|. +|++. .+.+
T Consensus 41 ~vvi~d~ggg~ig~e~A~~la~~G~----~Vtlv-~~~~ 74 (156)
T d1djqa2 41 RVVILNADTYFMAPSLAEKLATAGH----EVTIV-SGVH 74 (156)
T ss_dssp EEEEEECCCSSHHHHHHHHHHHTTC----EEEEE-ESSC
T ss_pred ceEEEecCCChHHHHHHHHHHHcCC----eEEEE-ecCC
Confidence 45454 999999999999999998 99999 7764
|
| >d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Escherichia coli [TaxId: 562]
Probab=80.26 E-value=0.69 Score=33.41 Aligned_cols=43 Identities=12% Similarity=0.126 Sum_probs=30.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCCCCCcEEEEeCC-CHHHHHHHHH
Q 024016 11 FILGFIGAGKMAESIAKGVAKSGVLPPDRICTAVHS-NLKRRDAFES 56 (274)
Q Consensus 11 ~~IgiIG~G~mG~~~a~~L~~~g~~~~~~v~v~~~r-~~~~~~~l~~ 56 (274)
+||||=|.|++|+.+.+.+.+... -+|...++. +++....|.+
T Consensus 2 ikigINGFGRIGR~v~R~~~~~~~---i~ivaINd~~~~~~~ayLl~ 45 (166)
T d1gado1 2 IKVGINGFGRIGRIVFRAAQKRSD---IEIVAINDLLDADYMAYMLK 45 (166)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCSS---EEEEEEECSSCHHHHHHHHH
T ss_pred eEEEEECCcHHHHHHHHHHhhCCC---eEEEEEeCCCCHHHHhhhhe
Confidence 689999999999999999988753 266666443 3344455554
|