Citrus Sinensis ID: 024025

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270---
MLCLFWVVCLFCVIISLKLFQLNDDNQGCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIAARDSVVFGGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYNDSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDNLYYKNLLNKKGLLHSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMGNIKPLTGSAGQIRINCRKIN
ccHHHHHHHccHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccHHHHcHHHHHcccccccccHHHHHHHHHHccccccccEEccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHcccccHHHHHHHHHccHHHHHHHHHHHHHHHccccccccccccccccccccc
cccEEEEEcHHHHHHHHHHHHHHHcccccccHHHcccccccccHHHccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccEcccEcccccHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHHHccEEEHHHcHHHcccHHcccHHHHHHHHHHcccccccccEEEcccccccccccHHHHHHHccccccHHHHHHHHccccHHHHHHHHHcHHHHHHHHHHHHHHHcccccEEHHHcEccccccccc
MLCLFWVVCLFCVIISLKLfqlnddnqgcdgsvllddtanfigektavpnnnsargfNVVDQIKANLEKACPRVVSCADILAIAARdsvvfggpswkvrlgrrdsttasraaantsippptsnLSALISSFSAQGLSLKNMVALAGghtvgkarctsfrghiyndsnidTSFARSLQqrcprrgndnvlanldrqtptcfdnlyyknllnkkgllhsdqelfngnsADFLVKRYAASISVFFKDFARGMikmgnikpltgsagqirINCRKIN
MLCLFWVVCLFCVIISLKLFQLNDDNQGCDGSVLLDDTANFIGEktavpnnnsarGFNVVDQIKANLEKACPRVVSCADILAIAardsvvfggpswkvrlgrrdsttasraaantsippptsnLSALISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYNDSNIDTSFARSLQQrcprrgndnvlanldrqtpTCFDNLYYKNLLNKKGLLHSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMgnikpltgsagqirincrkin
MLCLFWVVCLFCVIISLKLFQLNDDNQGCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIAARDSVVFGGPSWKVRLGrrdsttasraaantsIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYNDSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDnlyyknllnkkgllHSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMGNIKPLTGSAGQIRINCRKIN
*LCLFWVVCLFCVIISLKLFQLNDDNQGCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIAARDSVVFGGPSWKVRL***************************ISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYNDSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDNLYYKNLLNKKGLLHSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMGNIKPLTGSAGQIRINC****
*LCLFWVVCLFCVIISLKLFQLNDDNQGCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIAARDSVVFGGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYNDSNIDTSFARSLQQ*CP***N*NVLANLDRQTPTCFDNLYYKNLLNKKGLLHSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMGNIKPLTGSAGQIRINCRKIN
MLCLFWVVCLFCVIISLKLFQLNDDNQGCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIAARDSVVFGGPSWKVRLG**************SIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYNDSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDNLYYKNLLNKKGLLHSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMGNIKPLTGSAGQIRINCRKIN
MLCLFWVVCLFCVIISLKLFQLNDDNQGCDGSVLLDDTANFIGEKTA*PNNNSARGFNVVDQIKANLEKACPRVVSCADILAIAARDSVVFGGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYNDSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDNLYYKNLLNKKGLLHSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMGNIKPLTGSAGQIRINC****
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oooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLCLFWVVCLFCVIISLKLFQLNDDNQGCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIAARDSVVFGGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYNDSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDNLYYKNLLNKKGLLHSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMGNIKPLTGSAGQIRINCRKIN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query273 2.2.26 [Sep-21-2011]
A7NY33321 Peroxidase 4 OS=Vitis vin no no 0.941 0.800 0.634 1e-90
P22195316 Cationic peroxidase 1 OS= N/A no 0.904 0.781 0.620 3e-85
Q9FLC0324 Peroxidase 52 OS=Arabidop yes no 0.941 0.793 0.603 9e-85
Q9LVL2316 Peroxidase 67 OS=Arabidop no no 0.941 0.813 0.601 3e-82
P00434296 Peroxidase P7 OS=Brassica N/A no 0.941 0.868 0.592 5e-82
A5H452321 Peroxidase 70 OS=Zea mays N/A no 0.904 0.769 0.596 5e-80
Q9LVL1325 Peroxidase 68 OS=Arabidop no no 0.941 0.790 0.567 5e-77
Q0D3N0314 Peroxidase 2 OS=Oryza sat no no 0.886 0.770 0.56 4e-75
A2YPX3314 Peroxidase 2 OS=Oryza sat N/A no 0.886 0.770 0.56 5e-75
O23237331 Peroxidase 49 OS=Arabidop no no 0.904 0.746 0.550 2e-74
>sp|A7NY33|PER4_VITVI Peroxidase 4 OS=Vitis vinifera GN=GSVIVT00023967001 PE=1 SV=1 Back     alignment and function desciption
 Score =  333 bits (853), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 165/260 (63%), Positives = 196/260 (75%), Gaps = 3/260 (1%)

Query: 17  LKLFQLNDDNQGCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVS 76
           L+LF  +    GCD SVLLDDT++F GE+TAVPN NS RG NV+D IK+ +E  CP VVS
Sbjct: 62  LRLFFHDCFVNGCDASVLLDDTSSFTGEQTAVPNKNSIRGLNVIDNIKSQVESVCPGVVS 121

Query: 77  CADILAIAARDSVV-FGGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSALISSFSAQG 135
           CADI+AIAARDSVV  GGP W V+LGRRDS TAS + AN +IPPPTS+LS LIS F AQG
Sbjct: 122 CADIIAIAARDSVVILGGPDWDVKLGRRDSKTASLSGANNNIPPPTSSLSNLISKFQAQG 181

Query: 136 LSLKNMVALAGGHTVGKARCTSFRGHIYNDSNIDTSFARSLQQRCPRR--GNDNVLANLD 193
           LS ++MVAL+G HT+G+ARCTSFR  IYN++NID+SFA++ Q  CP      DN LA LD
Sbjct: 182 LSTRDMVALSGAHTIGQARCTSFRARIYNETNIDSSFAKTRQASCPSASGSGDNNLAPLD 241

Query: 194 RQTPTCFDNLYYKNLLNKKGLLHSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMG 253
            QTPT FDN YYKNL+N+KGLLHSDQ L+NG S D  VK Y  +   F  DF  GMIKMG
Sbjct: 242 LQTPTTFDNYYYKNLINQKGLLHSDQVLYNGGSTDSTVKTYVNNPKTFTSDFVAGMIKMG 301

Query: 254 NIKPLTGSAGQIRINCRKIN 273
           +I PLTGS G+IR +C K+N
Sbjct: 302 DITPLTGSEGEIRKSCGKVN 321
Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue.
Vitis vinifera (taxid: 29760)
EC: 1EC: .EC: 1EC: 1EC: .EC: 1EC: .EC: 7
>sp|P22195|PER1_ARAHY Cationic peroxidase 1 OS=Arachis hypogaea GN=PNC1 PE=1 SV=2 Back     alignment and function description
>sp|Q9FLC0|PER52_ARATH Peroxidase 52 OS=Arabidopsis thaliana GN=PER52 PE=2 SV=1 Back     alignment and function description
>sp|Q9LVL2|PER67_ARATH Peroxidase 67 OS=Arabidopsis thaliana GN=PER67 PE=2 SV=1 Back     alignment and function description
>sp|P00434|PERP7_BRARA Peroxidase P7 OS=Brassica rapa PE=1 SV=3 Back     alignment and function description
>sp|A5H452|PER70_MAIZE Peroxidase 70 OS=Zea mays GN=PER70 PE=1 SV=1 Back     alignment and function description
>sp|Q9LVL1|PER68_ARATH Peroxidase 68 OS=Arabidopsis thaliana GN=PER68 PE=2 SV=1 Back     alignment and function description
>sp|Q0D3N0|PER2_ORYSJ Peroxidase 2 OS=Oryza sativa subsp. japonica GN=PRX112 PE=2 SV=1 Back     alignment and function description
>sp|A2YPX3|PER2_ORYSI Peroxidase 2 OS=Oryza sativa subsp. indica GN=PRX112 PE=3 SV=2 Back     alignment and function description
>sp|O23237|PER49_ARATH Peroxidase 49 OS=Arabidopsis thaliana GN=PER49 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query273
205326623318 peroxidase 1 [Litchi chinensis] 0.901 0.773 0.817 1e-114
383081969333 peroxidase 2 [Eucalyptus globulus subsp. 0.901 0.738 0.748 1e-104
383081963333 peroxidase 2 [Eucalyptus pilularis] gi|3 0.901 0.738 0.744 1e-103
88659656258 peroxidase [Eucalyptus globulus subsp. g 0.901 0.953 0.744 1e-103
383081965333 peroxidase 2 [Eucalyptus pilularis] 0.901 0.738 0.736 1e-102
89276748234 peroxidase [Litchi chinensis] 0.802 0.935 0.818 1e-99
357461493318 Peroxidase [Medicago truncatula] gi|3554 0.901 0.773 0.716 2e-98
356554632325 PREDICTED: peroxidase 4-like [Glycine ma 0.901 0.756 0.672 3e-95
388522125316 unknown [Lotus japonicus] 0.901 0.778 0.684 6e-95
388491134319 unknown [Medicago truncatula] 0.901 0.771 0.693 2e-94
>gi|205326623|gb|ACI03401.1| peroxidase 1 [Litchi chinensis] Back     alignment and taxonomy information
 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 202/247 (81%), Positives = 222/247 (89%), Gaps = 1/247 (0%)

Query: 28  GCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIAARD 87
           GCDGS+LLDDT+ F+GEKTAVPNN S RGFNVVDQIKA LEKACP VVSCAD+LAIAARD
Sbjct: 71  GCDGSLLLDDTSTFVGEKTAVPNNISVRGFNVVDQIKAKLEKACPGVVSCADLLAIAARD 130

Query: 88  SVV-FGGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSALISSFSAQGLSLKNMVALAG 146
           SVV  GGPSWKVRLGRRDSTTASRA ANTSIPPPTSNLSALISSFSAQGLSLK++VAL+G
Sbjct: 131 SVVHLGGPSWKVRLGRRDSTTASRALANTSIPPPTSNLSALISSFSAQGLSLKDLVALSG 190

Query: 147 GHTVGKARCTSFRGHIYNDSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDNLYYK 206
            HT+G ARCTSFRGH+YND+NID+SFA+SL+++CPR GNDNVLANLDRQTP CFD LYY 
Sbjct: 191 SHTIGLARCTSFRGHVYNDTNIDSSFAQSLRRKCPRSGNDNVLANLDRQTPFCFDKLYYD 250

Query: 207 NLLNKKGLLHSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMGNIKPLTGSAGQIR 266
           NLL KKGLLHSDQ+LF G SAD  VK+YA + S FFKDFA  M+KMGNIKPLTG AGQIR
Sbjct: 251 NLLKKKGLLHSDQQLFKGGSADPFVKKYANNTSAFFKDFAGAMVKMGNIKPLTGRAGQIR 310

Query: 267 INCRKIN 273
           INCRK+N
Sbjct: 311 INCRKVN 317

Source: Litchi chinensis

Species: Litchi chinensis

Genus: Litchi

Family: Sapindaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|383081969|dbj|BAM05637.1| peroxidase 2 [Eucalyptus globulus subsp. globulus] Back     alignment and taxonomy information
>gi|383081963|dbj|BAM05634.1| peroxidase 2 [Eucalyptus pilularis] gi|383081967|dbj|BAM05636.1| peroxidase 2 [Eucalyptus pyrocarpa] Back     alignment and taxonomy information
>gi|88659656|gb|ABD47726.1| peroxidase [Eucalyptus globulus subsp. globulus] Back     alignment and taxonomy information
>gi|383081965|dbj|BAM05635.1| peroxidase 2 [Eucalyptus pilularis] Back     alignment and taxonomy information
>gi|89276748|gb|ABD66594.1| peroxidase [Litchi chinensis] Back     alignment and taxonomy information
>gi|357461493|ref|XP_003601028.1| Peroxidase [Medicago truncatula] gi|355490076|gb|AES71279.1| Peroxidase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356554632|ref|XP_003545648.1| PREDICTED: peroxidase 4-like [Glycine max] Back     alignment and taxonomy information
>gi|388522125|gb|AFK49124.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|388491134|gb|AFK33633.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query273
TAIR|locus:2153529324 PRX52 "peroxidase 52" [Arabido 0.941 0.793 0.534 1.3e-66
TAIR|locus:2161283316 AT5G58390 [Arabidopsis thalian 0.941 0.813 0.524 2e-65
TAIR|locus:2161193325 AT5G58400 [Arabidopsis thalian 0.941 0.790 0.513 5.4e-63
TAIR|locus:2115335331 AT4G36430 [Arabidopsis thalian 0.904 0.746 0.488 7.3e-59
TAIR|locus:2053129338 AT2G18150 [Arabidopsis thalian 0.904 0.730 0.476 2.8e-57
TAIR|locus:2053139337 AT2G18140 [Arabidopsis thalian 0.904 0.732 0.468 7.8e-55
TAIR|locus:2170204335 PA2 "peroxidase 2" [Arabidopsi 0.901 0.734 0.453 2.1e-54
TAIR|locus:2154925336 AT5G66390 [Arabidopsis thalian 0.904 0.735 0.445 1.5e-53
TAIR|locus:2028280346 AT1G44970 [Arabidopsis thalian 0.904 0.713 0.439 4.9e-53
TAIR|locus:2080928344 AT3G50990 [Arabidopsis thalian 0.901 0.715 0.447 2.1e-52
TAIR|locus:2153529 PRX52 "peroxidase 52" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
 Identities = 139/260 (53%), Positives = 173/260 (66%)

Query:    17 LKLFQLNDDNQGCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVS 76
             L+LF  +    GCDGS+LLDDT++F GE+ A PN NSARGFNV+D IK+ +EKACP VVS
Sbjct:    65 LRLFFHDCFVNGCDGSILLDDTSSFTGEQNAAPNRNSARGFNVIDNIKSAVEKACPGVVS 124

Query:    77 CADILAIAARDSVV-FGGPSWKVRLGXXXXXXXXXXXXXXXIPPPTSNLSALISSFSAQG 135
             CADILAIAARDSVV  GGP+W V++G               IP PTS+LS LISSFSA G
Sbjct:   125 CADILAIAARDSVVALGGPNWNVKVGRRDARTASQAAANSNIPAPTSSLSQLISSFSAVG 184

Query:   136 LSLKNMVALAGGHTVGKARCTSFRGHIYNDSNIDTSFARSLQQRCPRRGN--DNVLANLD 193
             LS ++MVAL+G HT+G++RCT+FR  IYN++NI+ +FA + Q+ CPR     D  LA LD
Sbjct:   185 LSTRDMVALSGAHTIGQSRCTNFRARIYNETNINAAFATTRQRTCPRASGSGDGNLAPLD 244

Query:   194 RQTPTCFDXXXXXXXXXXXXXXHSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMG 253
               T   FD              HSDQ LFNG S D +V+ Y+ + S F  DF   MIKMG
Sbjct:   245 VTTAASFDNNYFKNLMTQRGLLHSDQVLFNGGSTDSIVRGYSNNPSSFNSDFTAAMIKMG 304

Query:   254 NIKPLTGSAGQIRINCRKIN 273
             +I PLTGS+G+IR  C + N
Sbjct:   305 DISPLTGSSGEIRKVCGRTN 324
GO:0004601 "peroxidase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0006979 "response to oxidative stress" evidence=IEA
GO:0020037 "heme binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005618 "cell wall" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0005829 "cytosol" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
TAIR|locus:2161283 AT5G58390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161193 AT5G58400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2115335 AT4G36430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2053129 AT2G18150 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2053139 AT2G18140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2170204 PA2 "peroxidase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154925 AT5G66390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028280 AT1G44970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080928 AT3G50990 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P59121PERE5_ARMRU1, ., 1, 1, ., 1, ., 70.50770.90470.8071N/Ano
P80679PERA2_ARMRU1, ., 1, 1, ., 1, ., 70.51170.90100.8065N/Ano
P00434PERP7_BRARA1, ., 1, 1, ., 1, ., 70.59230.94130.8682N/Ano
Q9FLC0PER52_ARATH1, ., 1, 1, ., 1, ., 70.60380.94130.7932yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.11.1.70.914
3rd Layer1.11.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query273
cd00693298 cd00693, secretory_peroxidase, Horseradish peroxid 1e-135
PLN03030324 PLN03030, PLN03030, cationic peroxidase; Provision 2e-58
pfam00141180 pfam00141, peroxidase, Peroxidase 7e-52
cd00314255 cd00314, plant_peroxidase_like, Heme-dependent per 1e-26
cd00691253 cd00691, ascorbate_peroxidase, Ascorbate peroxidas 4e-16
PLN02879251 PLN02879, PLN02879, L-ascorbate peroxidase 6e-13
PLN02364250 PLN02364, PLN02364, L-ascorbate peroxidase 1 6e-11
cd08201264 cd08201, plant_peroxidase_like_1, Uncharacterized 2e-09
PLN02608289 PLN02608, PLN02608, L-ascorbate peroxidase 7e-09
>gnl|CDD|173827 cd00693, secretory_peroxidase, Horseradish peroxidase and related secretory plant peroxidases Back     alignment and domain information 
 Score =  382 bits (983), Expect = e-135
 Identities = 134/254 (52%), Positives = 173/254 (68%), Gaps = 10/254 (3%)

Query: 27  QGCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIAAR 86
           +GCD SVLLD TAN   EK A PN  S RGF+V+D IKA LE ACP VVSCADILA+AAR
Sbjct: 47  RGCDASVLLDSTANNTSEKDAPPNL-SLRGFDVIDDIKAALEAACPGVVSCADILALAAR 105

Query: 87  DSVVF-GGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSALISSFSAQGLSLKNMVALA 145
           D+VV  GGPS++V LGRRD    S A    ++P P  ++S LIS F+++GL++ ++VAL+
Sbjct: 106 DAVVLAGGPSYEVPLGRRDGR-VSSANDVGNLPSPFFSVSQLISLFASKGLTVTDLVALS 164

Query: 146 GGHTVGKARCTSFRGHIYN-------DSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPT 198
           G HT+G+A C+SF   +YN       D  +D ++A  L+++CP  G+D+ L  LD  TP 
Sbjct: 165 GAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVPLDPGTPN 224

Query: 199 CFDNLYYKNLLNKKGLLHSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMGNIKPL 258
            FDN YYKNLL  +GLL SDQ L +      +V RYAA+   FF+DFA  M+KMGNI  L
Sbjct: 225 TFDNSYYKNLLAGRGLLTSDQALLSDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVL 284

Query: 259 TGSAGQIRINCRKI 272
           TGS G+IR NCR +
Sbjct: 285 TGSQGEIRKNCRVV 298

Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites. Length = 298
>gnl|CDD|215545 PLN03030, PLN03030, cationic peroxidase; Provisional Back     alignment and domain information
>gnl|CDD|215745 pfam00141, peroxidase, Peroxidase Back     alignment and domain information
>gnl|CDD|173823 cd00314, plant_peroxidase_like, Heme-dependent peroxidases similar to plant peroxidases Back     alignment and domain information
>gnl|CDD|173825 cd00691, ascorbate_peroxidase, Ascorbate peroxidases and cytochrome C peroxidases Back     alignment and domain information
>gnl|CDD|178467 PLN02879, PLN02879, L-ascorbate peroxidase Back     alignment and domain information
>gnl|CDD|166005 PLN02364, PLN02364, L-ascorbate peroxidase 1 Back     alignment and domain information
>gnl|CDD|173829 cd08201, plant_peroxidase_like_1, Uncharacterized family of plant peroxidase-like proteins Back     alignment and domain information
>gnl|CDD|178218 PLN02608, PLN02608, L-ascorbate peroxidase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 273
PLN03030324 cationic peroxidase; Provisional 100.0
cd00693298 secretory_peroxidase Horseradish peroxidase and re 100.0
PF00141230 peroxidase: Peroxidase; InterPro: IPR002016 Peroxi 100.0
PLN02608289 L-ascorbate peroxidase 100.0
cd00691253 ascorbate_peroxidase Ascorbate peroxidases and cyt 100.0
cd00692328 ligninase Ligninase and other manganese-dependent 100.0
PLN02364250 L-ascorbate peroxidase 1 100.0
PLN02879251 L-ascorbate peroxidase 100.0
cd00314255 plant_peroxidase_like Heme-dependent peroxidases s 100.0
cd00649409 catalase_peroxidase_1 N-terminal catalytic domain 100.0
TIGR00198 716 cat_per_HPI catalase/peroxidase HPI. Note that the 100.0
PRK15061 726 catalase/hydroperoxidase HPI(I); Provisional 100.0
cd08201264 plant_peroxidase_like_1 Uncharacterized family of 100.0
cd08200297 catalase_peroxidase_2 C-terminal non-catalytic dom 100.0
TIGR00198716 cat_per_HPI catalase/peroxidase HPI. Note that the 100.0
PRK15061726 catalase/hydroperoxidase HPI(I); Provisional 100.0
COG0376 730 KatG Catalase (peroxidase I) [Inorganic ion transp 99.98
COG0376730 KatG Catalase (peroxidase I) [Inorganic ion transp 99.53
PTZ00411333 transaldolase-like protein; Provisional 88.61
PRK12346316 transaldolase A; Provisional 82.51
PRK05269318 transaldolase B; Provisional 82.4
TIGR00874317 talAB transaldolase. This family includes the majo 81.42
PRK12309391 transaldolase/EF-hand domain-containing protein; P 80.82
>PLN03030 cationic peroxidase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=7.8e-95  Score=666.88  Aligned_cols=261  Identities=41%  Similarity=0.672  Sum_probs=246.6

Q ss_pred             hccchhHHHHHHhhccccCCCCCccccccCCCCCccccccCCCCCcchhHHHHHHHHHHHHhhCCCCccHHHHHHHhhhc
Q 024025            8 VCLFCVIISLKLFQLNDDNQGCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIAARD   87 (273)
Q Consensus         8 ~~~~~~~~llRl~FHDc~v~GcDgSill~~~~~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VScADiialAar~   87 (273)
                      .+...+|.+|||+||||||+||||||||+++   ..||++++|. +++||++|+.||+++|++||++|||||||||||||
T Consensus        51 ~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~---~~Ek~a~~N~-~l~Gf~~i~~iK~~~e~~CPg~VSCADilalAarD  126 (324)
T PLN03030         51 SNPAIAPGLLRMHFHDCFVRGCDASILIDGS---NTEKTALPNL-LLRGYDVIDDAKTQLEAACPGVVSCADILALAARD  126 (324)
T ss_pred             hCcccchhhhhhhhhhheecCCceEEeeCCC---cccccCCCCc-CcchHHHHHHHHHHHHhhCCCcccHHHHHHHHhhc
Confidence            4578899999999999999999999999864   3699999997 88999999999999999999999999999999999


Q ss_pred             ccc-cCCcceeecCCCCCCCccccccccCCCCCCCCCHHHHHHHHHHcCCCchhhhhhcccccccccccccccccccC--
Q 024025           88 SVV-FGGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYN--  164 (273)
Q Consensus        88 Av~-~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~d~VaL~GaHtiG~~hc~~f~~Rl~~--  164 (273)
                      ||+ +|||.|+|++||||+++|.+.++. +||.|+.++++|++.|+++||+.+|||+||||||||++||.+|.+||||  
T Consensus       127 aV~~~gGP~~~v~~GRrDg~~s~~~~~~-~LP~p~~~~~~l~~~F~~~Gl~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~  205 (324)
T PLN03030        127 SVVLTNGLTWPVPTGRRDGRVSLASDAS-NLPGFTDSIDVQKQKFAAKGLNTQDLVTLVGGHTIGTTACQFFRYRLYNFT  205 (324)
T ss_pred             cccccCCCceeeeccccCCCCCCccccc-CCcCCCCCHHHHHHHHHHcCCCHHHheeeeeccccceeeeecccccccccc
Confidence            999 999999999999999999777664 8999999999999999999999999999999999999999999999995  


Q ss_pred             ------CCCCCHHHHHHhhccCCCCCCCCccccCCCCCCcccChHHHHHHHhcCCccccchhcccCcchHHHHHHHhhCh
Q 024025          165 ------DSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDNLYYKNLLNKKGLLHSDQELFNGNSADFLVKRYAASI  238 (273)
Q Consensus       165 ------dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FDn~Yy~~l~~~~glL~SD~~L~~d~~t~~~V~~yA~d~  238 (273)
                            ||+||+.|+.+|++.||..+...+.+++|+.||.+|||+||+||++++|+|+|||+|++|++|+++|++||.|+
T Consensus       206 ~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~nll~~rGlL~SDq~L~~d~~T~~~V~~~A~~~  285 (324)
T PLN03030        206 TTGNGADPSIDASFVPQLQALCPQNGDGSRRIALDTGSSNRFDASFFSNLKNGRGILESDQKLWTDASTRTFVQRFLGVR  285 (324)
T ss_pred             CCCCCCCCchhHHHHHHHhccCCCCCCCCccccCCCCCCcccccHHHHHHHhcCCCcCCchHhhcCccHHHHHHHHhccc
Confidence                  89999999999999999633333468899999999999999999999999999999999999999999999875


Q ss_pred             ----hHHHHHHHHHHHHhhcCCCCCCCCCccccccccCC
Q 024025          239 ----SVFFKDFARGMIKMGNIKPLTGSAGQIRINCRKIN  273 (273)
Q Consensus       239 ----~~F~~~Fa~am~Km~~lgv~tg~~GeIR~~C~~~N  273 (273)
                          +.|+++|++||+|||+|+|+||++|||||+|++||
T Consensus       286 ~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C~~vN  324 (324)
T PLN03030        286 GLAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRKVCSAIN  324 (324)
T ss_pred             ccchhhhHHHHHHHHHHHccCCCCCCCCCceeccccccC
Confidence                59999999999999999999999999999999998

>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases Back     alignment and domain information
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions Back     alignment and domain information
>PLN02608 L-ascorbate peroxidase Back     alignment and domain information
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases Back     alignment and domain information
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases Back     alignment and domain information
>PLN02364 L-ascorbate peroxidase 1 Back     alignment and domain information
>PLN02879 L-ascorbate peroxidase Back     alignment and domain information
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases Back     alignment and domain information
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases Back     alignment and domain information
>TIGR00198 cat_per_HPI catalase/peroxidase HPI Back     alignment and domain information
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional Back     alignment and domain information
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins Back     alignment and domain information
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases Back     alignment and domain information
>TIGR00198 cat_per_HPI catalase/peroxidase HPI Back     alignment and domain information
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional Back     alignment and domain information
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism] Back     alignment and domain information
>PTZ00411 transaldolase-like protein; Provisional Back     alignment and domain information
>PRK12346 transaldolase A; Provisional Back     alignment and domain information
>PRK05269 transaldolase B; Provisional Back     alignment and domain information
>TIGR00874 talAB transaldolase Back     alignment and domain information
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query273
1sch_A294 Peanut Peroxidase Length = 294 3e-71
1pa2_A306 Arabidopsis Thaliana Peroxidase A2 Length = 306 1e-57
4a5g_A308 Raphanus Sativus Anionic Peroxidase. Length = 308 2e-54
1gx2_A309 Recombinant Horseradish Peroxidase Phe209ser Comple 3e-52
3atj_A309 Heme Ligand Mutant Of Recombinant Horseradish Perox 1e-51
1w4w_A323 Ferric Horseradish Peroxidase C1a In Complex With F 1e-51
1kzm_A308 Distal Heme Pocket Mutant (r38s/h42e) Of Recombinan 2e-51
1gwo_A309 Recombinant Horseradish Peroxidase C1a Ala170gln Le 2e-51
1atj_A306 Recombinant Horseradish Peroxidase C1a Length = 306 2e-51
4atj_A309 Distal Heme Pocket Mutant (H42e) Of Recombinant Hor 2e-51
6atj_A308 Recombinant Horseradish Peroxidase C Complex With F 2e-51
2atj_A308 Recombinant Horseradish Peroxidase Complex With Ben 2e-51
1gwu_A309 Recombinant Horseradish Peroxidase C1a Ala140gly Le 3e-51
2ylj_A306 Horse Radish Peroxidase, Mutant S167y Length = 306 4e-51
1gw2_A308 Recombinant Horseradish Peroxidase C1a Thr171ser In 5e-51
1fhf_A304 The Structure Of Soybean Peroxidase Length = 304 4e-50
1qgj_A300 Arabidopsis Thaliana Peroxidase N Length = 300 6e-50
3hdl_A304 Crystal Structure Of Highly Glycosylated Peroxidase 1e-42
1bgp_A309 Crystal Structure Of Barley Grain Peroxidase 1 Leng 8e-34
1apx_A249 Crystal Structure Of Recombinant Ascorbate Peroxida 7e-04
>pdb|1SCH|A Chain A, Peanut Peroxidase Length = 294 Back     alignment and structure 
Iteration: 1

 Score =  265 bits (676), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 133/248 (53%), Positives = 160/248 (64%), Gaps = 1/248 (0%)
Query: 27  QGCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIAAR 86
           QGCD SVLLDDT+NF GEKTA PN NS RGF V+D IK+ +E  CP VVSCADILA+AAR
Sbjct: 47  QGCDASVLLDDTSNFTGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAAR 106
Query: 87  DSVV-FGGPSWKVRLGXXXXXXXXXXXXXXXIPPPTSNLSALISSFSAQGLSLKNMVALA 145
           DSVV  GG SW V LG               +P P  NLS LIS+FS +G + K +V L+
Sbjct: 107 DSVVALGGASWNVLLGRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLS 166
Query: 146 GGHTVGKARCTSFRGHIYNDSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDXXXX 205
           G HT+G+A+CT+FR  IYN+SNID ++A+SLQ  CP  G D  L+  D  TP  FD    
Sbjct: 167 GAHTIGQAQCTAFRTRIYNESNIDPTYAKSLQANCPSVGGDTNLSPFDVTTPNKFDNAYY 226
Query: 206 XXXXXXXXXXHSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMGNIKPLTGSAGQI 265
                     HSDQ+LFNG S D  V  Y+ + + F  DF   MIKMGN+ PLTG++GQI
Sbjct: 227 INLRNKKGLLHSDQQLFNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQI 286
Query: 266 RINCRKIN 273
           R NCRK N
Sbjct: 287 RTNCRKTN 294
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2 Length = 306 Back     alignment and structure
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase. Length = 308 Back     alignment and structure
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase In Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate Length = 323 Back     alignment and structure
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant Horseradish Peroxidase C (hrp C) Length = 308 Back     alignment and structure
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln Length = 309 Back     alignment and structure
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Length = 306 Back     alignment and structure
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant Horseradish Peroxidase In Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic Acid Length = 308 Back     alignment and structure
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With Benzhydroxamic Acid Length = 308 Back     alignment and structure
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly Length = 309 Back     alignment and structure
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y Length = 306 Back     alignment and structure
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In Complex With Ferulic Acid Length = 308 Back     alignment and structure
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase Length = 304 Back     alignment and structure
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N Length = 300 Back     alignment and structure
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From Royal Palm Tree Length = 304 Back     alignment and structure
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1 Length = 309 Back     alignment and structure
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase Length = 249 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query273
1sch_A294 PNP, peanut peroxidase, major cationic isozyme; ca 1e-158
1pa2_A306 Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45 1e-154
3hdl_A304 Royal PALM TREE peroxidase; glycosylated, oxidored 1e-153
1fhf_A304 SEED coat peroxidase; oxidoreductase; HET: HEM; 2. 1e-152
1gwu_A309 Peroxidase C1A; oxidoreductase, glycoprotein, heme 1e-151
1bgp_A309 Barley grain peroxidase; chromoprotein, oxidoreduc 1e-148
1qgj_A300 Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A 1e-144
1iyn_A295 Chloroplastic ascorbate peroxidase; hydrogen perox 6e-92
3fmu_A331 VersatIle peroxidase VPL2; class II (fungal) perox 1e-63
2vcn_A261 Ascorbate peroxidase; INH, APX, isoniazid, oxidore 9e-60
3m5q_A357 Manganese peroxidase 1; heme, Mn(II)-binding site, 4e-58
2e39_A344 Peroxidase; heme protein, coordination geometry of 7e-57
1llp_A343 LIP4.15, lignin peroxidase; heme protein, glyco pr 3e-55
3q3u_A338 Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A 1e-54
3riv_A271 Ascorbate peroxidase; alpha helical bundle, heme p 1e-18
3e2o_A294 CCP, cytochrome C peroxidase; cytochrome C peroxid 4e-15
>1sch_A PNP, peanut peroxidase, major cationic isozyme; calcium binding, glycosylation, oxidoreductase; HET: NAG HEM; 2.56A {Arachis hypogaea} SCOP: a.93.1.1 Length = 294 Back     alignment and structure
 Score =  441 bits (1137), Expect = e-158
 Identities = 154/248 (62%), Positives = 184/248 (74%), Gaps = 1/248 (0%)

Query: 27  QGCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIAAR 86
           QGCD SVLLDDT+NF GEKTA PN NS RGF V+D IK+ +E  CP VVSCADILA+AAR
Sbjct: 47  QGCDASVLLDDTSNFTGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAAR 106

Query: 87  DSVVF-GGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSALISSFSAQGLSLKNMVALA 145
           DSVV  GG SW V LGRRDSTTAS ++AN+ +P P  NLS LIS+FS +G + K +V L+
Sbjct: 107 DSVVALGGASWNVLLGRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLS 166

Query: 146 GGHTVGKARCTSFRGHIYNDSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDNLYY 205
           G HT+G+A+CT+FR  IYN+SNID ++A+SLQ  CP  G D  L+  D  TP  FDN YY
Sbjct: 167 GAHTIGQAQCTAFRTRIYNESNIDPTYAKSLQANCPSVGGDTNLSPFDVTTPNKFDNAYY 226

Query: 206 KNLLNKKGLLHSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMGNIKPLTGSAGQI 265
            NL NKKGLLHSDQ+LFNG S D  V  Y+ + + F  DF   MIKMGN+ PLTG++GQI
Sbjct: 227 INLRNKKGLLHSDQQLFNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQI 286

Query: 266 RINCRKIN 273
           R NCRK N
Sbjct: 287 RTNCRKTN 294
>1pa2_A Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45A {Arabidopsis thaliana} SCOP: a.93.1.1 PDB: 1qo4_A* Length = 306 Back     alignment and structure
>3hdl_A Royal PALM TREE peroxidase; glycosylated, oxidoreductase; HET: HEM MES NAG FUC MAN; 1.85A {Roystonea regia} Length = 304 Back     alignment and structure
>1fhf_A SEED coat peroxidase; oxidoreductase; HET: HEM; 2.80A {Glycine max} SCOP: a.93.1.1 Length = 304 Back     alignment and structure
>1gwu_A Peroxidase C1A; oxidoreductase, glycoprotein, heme, multigene family, signal,; HET: HEM; 1.31A {Armoracia rusticana} SCOP: a.93.1.1 PDB: 1w4w_A* 1w4y_A* 1gwo_A* 2atj_A* 1gwt_A* 3atj_A* 1gx2_A* 7atj_A* 1h55_A* 1h58_A* 1h5a_A* 1h5c_A* 1h5d_A* 1h5e_A* 1h5f_A* 1h57_A* 1h5h_A* 1h5i_A* 1h5j_A* 1h5k_A* ... Length = 309 Back     alignment and structure
>1bgp_A Barley grain peroxidase; chromoprotein, oxidoreductase; HET: HEM; 1.90A {Hordeum vulgare} SCOP: a.93.1.1 Length = 309 Back     alignment and structure
>1qgj_A Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A {Arabidopsis thaliana} SCOP: a.93.1.1 Length = 300 Back     alignment and structure
>1iyn_A Chloroplastic ascorbate peroxidase; hydrogen peroxide, tobacco plant, stromal ascorbate peroxidase, oxidoreductase; HET: HEM; 1.60A {Nicotiana tabacum} SCOP: a.93.1.1 Length = 295 Back     alignment and structure
>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases, protoporphyrin IX, electron T lignin peroxidase, lignin degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB: 3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A* 2vka_A* Length = 331 Back     alignment and structure
>2vcn_A Ascorbate peroxidase; INH, APX, isoniazid, oxidoreductase; HET: HEM ISZ; 1.20A {Glycine max} PDB: 2ggn_X* 2ghd_X* 2ghe_X* 2ghc_X* 2vnx_X* 2vnz_X* 2vo2_X* 2wd4_A* 1oaf_A* 1oag_A* 1v0h_X* 2ghh_X* 2ghk_X* 2vcf_X* 2cl4_X* 2vcs_A* 2xi6_A* 2xif_A* 2xih_A* 2xj6_A* ... Length = 261 Back     alignment and structure
>3m5q_A Manganese peroxidase 1; heme, Mn(II)-binding site, Ca(II)-binding site, glycosylation, ultrahigh resolution, calcium; HET: NAG MAN HEM; 0.93A {Phanerochaete chrysosporium} PDB: 1mnp_A* 1yyg_A* 1yzp_A* 1yzr_A* 1yyd_A* 3m8m_A* 1mn1_A* 1mn2_A* Length = 357 Back     alignment and structure
>2e39_A Peroxidase; heme protein, coordination geometry of heme iron, ARP, perox oxidoreductase; HET: NAG MAN HEM; 1.30A {'arthromyces ramosus'} SCOP: a.93.1.1 PDB: 1arp_A* 1arv_A* 1arw_A* 1arx_A* 1ary_A* 1c8i_A* 1ck6_A* 1gza_A* 1gzb_A* 1hsr_A* 1aru_A* 2e3a_A* 2e3b_A* 1lyk_A* 1lyc_A* 1ly9_A* 1h3j_A* 1ly8_A* Length = 344 Back     alignment and structure
>1llp_A LIP4.15, lignin peroxidase; heme protein, glyco protein,, oxidoreductase; HET: NAG MAN A2G HEM; 1.70A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1lga_A* 1b80_A* 1b82_A* 1b85_A* 1qpa_A* Length = 343 Back     alignment and structure
>3q3u_A Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A {Trametes cervina} Length = 338 Back     alignment and structure
>3riv_A Ascorbate peroxidase; alpha helical bundle, heme peroxidase, oxidoreductase; HET: HEM; 1.76A {Leishmania major} PDB: 3riw_A* Length = 271 Back     alignment and structure
>3e2o_A CCP, cytochrome C peroxidase; cytochrome C peroxidase (CCP), heme, hydrogen peroxide, iron, metal-binding, mitochondrion; HET: HEM; 1.06A {Saccharomyces cerevisiae} PDB: 1z53_A* 1kok_A* 1sbm_A* 1sdq_A* 1s73_A* 1zby_A* 1zbz_A* 2b0z_A* 2b10_A* 2b11_A* 2b12_A* 2cyp_A* 2ycg_A* 2v23_A* 1ebe_A* 3r98_A* 3r99_A* 1mkr_A* 1mk8_A* 1mkq_A* ... Length = 294 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query273
3hdl_A304 Royal PALM TREE peroxidase; glycosylated, oxidored 100.0
1sch_A294 PNP, peanut peroxidase, major cationic isozyme; ca 100.0
1fhf_A304 SEED coat peroxidase; oxidoreductase; HET: HEM; 2. 100.0
1pa2_A306 Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45 100.0
1gwu_A309 Peroxidase C1A; oxidoreductase, glycoprotein, heme 100.0
1bgp_A309 Barley grain peroxidase; chromoprotein, oxidoreduc 100.0
1qgj_A300 Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A 100.0
1iyn_A295 Chloroplastic ascorbate peroxidase; hydrogen perox 100.0
1llp_A343 LIP4.15, lignin peroxidase; heme protein, glyco pr 100.0
2e39_A344 Peroxidase; heme protein, coordination geometry of 100.0
3m5q_A357 Manganese peroxidase 1; heme, Mn(II)-binding site, 100.0
3fmu_A331 VersatIle peroxidase VPL2; class II (fungal) perox 100.0
2vcn_A261 Ascorbate peroxidase; INH, APX, isoniazid, oxidore 100.0
2cca_A 740 Peroxidase/catalase T; oxidoreductase, catalase-pe 100.0
3q3u_A338 Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A 100.0
3riv_A271 Ascorbate peroxidase; alpha helical bundle, heme p 100.0
1itk_A 731 Catalase-peroxidase; heme protein, oxidoreductase; 100.0
1ub2_A 720 Catalase-peroxidase; KATG, cyanobacteria, oxidored 100.0
3ut2_A 764 Catalase-peroxidase 2; KATG, fungal, heme enzyme, 100.0
3n3r_A 748 Catalase-peroxidase; E198A variant, tuberclosis, i 100.0
3vli_A 737 Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1 100.0
3e2o_A294 CCP, cytochrome C peroxidase; cytochrome C peroxid 100.0
1u2k_A309 Peroxidase/catalase HPI; KATG, catalase-peroxidase 100.0
2cca_A740 Peroxidase/catalase T; oxidoreductase, catalase-pe 100.0
1itk_A731 Catalase-peroxidase; heme protein, oxidoreductase; 100.0
1ub2_A720 Catalase-peroxidase; KATG, cyanobacteria, oxidored 100.0
3vli_A737 Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1 100.0
3n3r_A748 Catalase-peroxidase; E198A variant, tuberclosis, i 100.0
3ut2_A764 Catalase-peroxidase 2; KATG, fungal, heme enzyme, 100.0
3rrw_A268 Thylakoid lumenal 29 kDa protein, chloroplastic; c 100.0
>3hdl_A Royal PALM TREE peroxidase; glycosylated, oxidoreductase; HET: HEM MES NAG FUC MAN; 1.85A {Roystonea regia} SCOP: a.93.1.0 Back     alignment and structure
Probab=100.00  E-value=1.5e-99  Score=695.62  Aligned_cols=266  Identities=41%  Similarity=0.662  Sum_probs=256.2

Q ss_pred             hccchhHHHHHHhhccccCCCCCccccccCCCCCccccccCCCCCcchhHHHHHHHHHHHHhhCCCCccHHHHHHHhhhc
Q 024025            8 VCLFCVIISLKLFQLNDDNQGCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIAARD   87 (273)
Q Consensus         8 ~~~~~~~~llRl~FHDc~v~GcDgSill~~~~~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VScADiialAar~   87 (273)
                      .+...+|.+|||+||||||+||||||||++++++.+|+++++|.+++|||++||.||++||++||++||||||||||||+
T Consensus        28 ~d~~~aa~llRL~FHDCfv~GCDgSiLld~t~~~~~Ek~~~~N~~~lrgf~vid~iK~~le~~Cp~~VScADilalAard  107 (304)
T 3hdl_A           28 NNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANNTAEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARD  107 (304)
T ss_dssp             HCTTHHHHHHHHHHHHHTTTSSSSGGGCCCBTTBCCGGGSTTTTTTCCCHHHHHHHHHHHHHHSTTTSCHHHHHHHHHHH
T ss_pred             hCCcchHHHHHHheecccCCCCCeeeeecCCCCCcccccCCCcccchHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhh
Confidence            35678999999999999999999999999988888999999998778999999999999999999999999999999999


Q ss_pred             ccc-cCCcceeecCCCCCCCccccccccCCCCCCCCCHHHHHHHHHHcCCCchhhhhhcccccccccccccccccccC--
Q 024025           88 SVV-FGGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYN--  164 (273)
Q Consensus        88 Av~-~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~d~VaL~GaHtiG~~hc~~f~~Rl~~--  164 (273)
                      ||+ +|||.|+|++||+|++++...+++++||+|+.++++|++.|++|||+++||||||||||||++||.+|.+||||  
T Consensus       108 av~~~GGP~~~v~~GRrD~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~d~VaLsGaHTiG~ahC~~f~~Rly~f~  187 (304)
T 3hdl_A          108 SANLAGNITYQVPSGRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSFTNRLYNFN  187 (304)
T ss_dssp             HHHHHHCCCCCCEECCCBCSCCCHHHHHHHSCCTTCCHHHHHHHHHTTTCCHHHHHHHGGGGGSSEEEGGGTGGGTSSCS
T ss_pred             hhhccCCCccccccCccCCCCCCccccccCCCCCCCCHHHHHHHHHHcCCCHHHhhhhhccccccccccchhhhhhcccC
Confidence            999 99999999999999999988877788999999999999999999999999999999999999999999999996  


Q ss_pred             -----CCCCCHHHHHHhhccCCCCCC--CCccccCCCCCCcccChHHHHHHHhcCCccccchhcccCcchHHHHHHHhhC
Q 024025          165 -----DSNIDTSFARSLQQRCPRRGN--DNVLANLDRQTPTCFDNLYYKNLLNKKGLLHSDQELFNGNSADFLVKRYAAS  237 (273)
Q Consensus       165 -----dp~~d~~~~~~L~~~Cp~~~~--~~~~~~~D~~tp~~FDn~Yy~~l~~~~glL~SD~~L~~d~~t~~~V~~yA~d  237 (273)
                           ||+||+.|++.|++.||.+++  +.+.+++|+.||.+|||+||++|+.++|+|+|||+|+.|++|+++|++||.|
T Consensus       188 ~~~~~DP~ld~~~a~~L~~~Cp~~~~~~~~~~~~lD~~TP~~FDN~Yy~nL~~~~glL~SDq~L~~d~~t~~~V~~yA~~  267 (304)
T 3hdl_A          188 SGSGIDPTLSPSYAALLRNTCPANSTRFTPITVSLDIITPSVLDNMYYTGVQLTLGLLTSDQALVTEANLSAAVKANAMN  267 (304)
T ss_dssp             SSSSSCTTSCHHHHHHHHHHSCTTCCTTSCCEEESCSSSTTSCSTHHHHHHHTTCCCSHHHHGGGSSHHHHHHHHHHHHC
T ss_pred             CCCCCCCcccHHHHHHHhccCCCCCCCCCccccCCCCCCcccccHHHHHHHHhCcCCCCCCHHHhcCccHHHHHHHhccC
Confidence                 899999999999999998655  5567899999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhhcCCCCCCCCCccccccccCC
Q 024025          238 ISVFFKDFARGMIKMGNIKPLTGSAGQIRINCRKIN  273 (273)
Q Consensus       238 ~~~F~~~Fa~am~Km~~lgv~tg~~GeIR~~C~~~N  273 (273)
                      ++.|+++|++||+||++|||+||.+|||||+|++||
T Consensus       268 ~~~F~~~Fa~AmvKmg~igv~tg~~GeIR~~C~~~N  303 (304)
T 3hdl_A          268 LTAWASKFAQAMVKMGQIEVLTGTQGEIRTNCSVVN  303 (304)
T ss_dssp             HHHHHHHHHHHHHHHTTTTCCCTTSSBCCSBTTBCC
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCCeeeCCccccC
Confidence            999999999999999999999999999999999998
>1sch_A PNP, peanut peroxidase, major cationic isozyme; calcium binding, glycosylation, oxidoreductase; HET: NAG HEM; 2.56A {Arachis hypogaea} SCOP: a.93.1.1 Back     alignment and structure
>1fhf_A SEED coat peroxidase; oxidoreductase; HET: HEM; 2.80A {Glycine max} SCOP: a.93.1.1 Back     alignment and structure
>1pa2_A Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45A {Arabidopsis thaliana} SCOP: a.93.1.1 PDB: 1qo4_A* Back     alignment and structure
>1gwu_A Peroxidase C1A; oxidoreductase, glycoprotein, heme, multigene family, signal,; HET: HEM; 1.31A {Armoracia rusticana} SCOP: a.93.1.1 PDB: 1w4w_A* 1w4y_A* 1gwo_A* 2atj_A* 1gwt_A* 3atj_A* 1gx2_A* 7atj_A* 1h55_A* 1h58_A* 1h5a_A* 1h5c_A* 1h5d_A* 1h5e_A* 1h5f_A* 1h57_A* 1h5h_A* 1h5i_A* 1h5j_A* 1h5k_A* ... Back     alignment and structure
>1bgp_A Barley grain peroxidase; chromoprotein, oxidoreductase; HET: HEM; 1.90A {Hordeum vulgare} SCOP: a.93.1.1 Back     alignment and structure
>1qgj_A Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A {Arabidopsis thaliana} SCOP: a.93.1.1 Back     alignment and structure
>1iyn_A Chloroplastic ascorbate peroxidase; hydrogen peroxide, tobacco plant, stromal ascorbate peroxidase, oxidoreductase; HET: HEM; 1.60A {Nicotiana tabacum} SCOP: a.93.1.1 Back     alignment and structure
>1llp_A LIP4.15, lignin peroxidase; heme protein, glyco protein,, oxidoreductase; HET: NAG MAN A2G HEM; 1.70A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1lga_A* 1b80_A* 1b82_A* 1b85_A* 1qpa_A* Back     alignment and structure
>2e39_A Peroxidase; heme protein, coordination geometry of heme iron, ARP, perox oxidoreductase; HET: NAG MAN HEM; 1.30A {'arthromyces ramosus'} SCOP: a.93.1.1 PDB: 1arp_A* 1arv_A* 1arw_A* 1arx_A* 1ary_A* 1c8i_A* 1ck6_A* 1gza_A* 1gzb_A* 1hsr_A* 1aru_A* 2e3a_A* 2e3b_A* 1lyk_A* 1lyc_A* 1ly9_A* 1h3j_A* 1ly8_A* Back     alignment and structure
>3m5q_A Manganese peroxidase 1; heme, Mn(II)-binding site, Ca(II)-binding site, glycosylation, ultrahigh resolution, calcium; HET: NAG MAN HEM; 0.93A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1mnp_A* 1yyg_A* 1yzp_A* 1yzr_A* 1yyd_A* 3m8m_A* 1mn1_A* 1mn2_A* Back     alignment and structure
>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases, protoporphyrin IX, electron T lignin peroxidase, lignin degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB: 3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A* 2vka_A* 4fcn_A* 4g05_A* 4fcs_A* 4fef_A* 4fdq_A* Back     alignment and structure
>2vcn_A Ascorbate peroxidase; INH, APX, isoniazid, oxidoreductase; HET: HEM ISZ; 1.20A {Glycine max} PDB: 2ggn_X* 2ghd_X* 2ghe_X* 2ghc_X* 2vnx_X* 2vnz_X* 2vo2_X* 2wd4_A* 1oaf_A* 1oag_A* 1v0h_X* 2ghh_X* 2ghk_X* 2vcf_X* 2cl4_X* 2vcs_A* 2xi6_A* 2xif_A* 2xih_A* 2xj6_A* ... Back     alignment and structure
>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A* Back     alignment and structure
>3q3u_A Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A {Trametes cervina} SCOP: a.93.1.0 Back     alignment and structure
>3riv_A Ascorbate peroxidase; alpha helical bundle, heme peroxidase, oxidoreductase; HET: HEM; 1.76A {Leishmania major} PDB: 3riw_A* 4ged_A* Back     alignment and structure
>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM; 2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>3ut2_A Catalase-peroxidase 2; KATG, fungal, heme enzyme, oxidoreducta; HET: TOX HEM; 1.55A {Magnaporthe oryzae 70-15} Back     alignment and structure
>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A {Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A* 3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A* 1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A* Back     alignment and structure
>3vli_A Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1.70A {Haloarcula marismortui} PDB: 3vlh_A* 3vlj_A* 3vlk_A* 3vll_A* 3uw8_A* 3vlm_A* 1itk_A* Back     alignment and structure
>3e2o_A CCP, cytochrome C peroxidase; cytochrome C peroxidase (CCP), heme, hydrogen peroxide, iron, metal-binding, mitochondrion; HET: HEM; 1.06A {Saccharomyces cerevisiae} SCOP: a.93.1.1 PDB: 4a71_A* 1z53_A* 1kok_A* 1sbm_A* 1sdq_A* 1s73_A* 1zby_A* 1zbz_A* 2b0z_A* 2b10_A* 2b11_A* 2b12_A* 2cyp_A* 2ycg_A* 4a6z_A* 2v23_A* 1ebe_A* 3r98_A* 3r99_A* 1mkr_A* ... Back     alignment and structure
>1u2k_A Peroxidase/catalase HPI; KATG, catalase-peroxidase, C-terminal domain, oxidoreductase; 2.00A {Escherichia coli} SCOP: a.93.1.3 PDB: 1u2l_A 1u2j_A Back     alignment and structure
>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A* Back     alignment and structure
>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM; 2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>3vli_A Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1.70A {Haloarcula marismortui} PDB: 3vlh_A* 3vlj_A* 3vlk_A* 3vll_A* 3uw8_A* 3vlm_A* 1itk_A* Back     alignment and structure
>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A {Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A* 3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A* 1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A* Back     alignment and structure
>3ut2_A Catalase-peroxidase 2; KATG, fungal, heme enzyme, oxidoreducta; HET: TOX HEM; 1.55A {Magnaporthe oryzae 70-15} Back     alignment and structure
>3rrw_A Thylakoid lumenal 29 kDa protein, chloroplastic; chloroplast thylakoid lumen, plant protein; 2.50A {Arabidopsis thaliana} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 273
d1fhfa_304 a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine m 1e-100
d1pa2a_306 a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (A 5e-99
d1scha_294 a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hy 1e-95
d1qgja_300 a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (A 3e-94
d1gwua_307 a.93.1.1 (A:) Plant peroxidase {Horseradish (Armor 5e-90
d1bgpa_309 a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vu 2e-86
d1llpa_343 a.93.1.1 (A:) Fungal peroxidase (ligninase) {White 8e-60
d1yyda1357 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) { 2e-59
d2e39a1336 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) { 4e-59
d1iyna_275 a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco 1e-40
d2euta1291 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {B 4e-34
d1oafa_250 a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glyci 1e-33
>d1fhfa_ a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine max) [TaxId: 3847]} Length = 304 Back     information, alignment and structure

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: CCP-like
domain: Plant peroxidase
species: Soybean (Glycine max) [TaxId: 3847]

 Score =  293 bits (751), Expect = e-100
 Identities = 125/257 (48%), Positives = 167/257 (64%), Gaps = 10/257 (3%)

Query: 27  QGCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIAAR 86
           QGCDGSVLL++T     E+ A+PN NS RG +VV+ IK  +E +CP  VSCADILAIAA 
Sbjct: 47  QGCDGSVLLNNTDTIESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAE 106

Query: 87  DSV-VFGGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSALISSFSAQGLSLKNMVALA 145
            +  + GGP W V LGRRDS TA+R  AN ++P P  NL+ L +SF+ QGL+  ++V L+
Sbjct: 107 IASVLGGGPGWPVPLGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLS 166

Query: 146 GGHTVGKARCTSFRGHIYN-------DSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPT 198
           GGHT G+ARC++F   +YN       D  ++T++   L+ RCP+    + L NLD  TP 
Sbjct: 167 GGHTFGRARCSTFINRLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLSTPD 226

Query: 199 CFDNLYYKNLLNKKGLLHSDQELFNGNSADF--LVKRYAASISVFFKDFARGMIKMGNIK 256
            FDN YY NLL   GLL SDQELF+   AD   +V  ++++ + FF +F   MIKMGNI 
Sbjct: 227 QFDNRYYSNLLQLNGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIG 286

Query: 257 PLTGSAGQIRINCRKIN 273
            LTG  G+IR+ C  +N
Sbjct: 287 VLTGDEGEIRLQCNFVN 303
>d1pa2a_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase A2 [TaxId: 3702]} Length = 306 Back     information, alignment and structure
>d1scha_ a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hypogaea) [TaxId: 3818]} Length = 294 Back     information, alignment and structure
>d1qgja_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase N [TaxId: 3702]} Length = 300 Back     information, alignment and structure
>d1gwua_ a.93.1.1 (A:) Plant peroxidase {Horseradish (Armoracia rusticana) [TaxId: 3704]} Length = 307 Back     information, alignment and structure
>d1bgpa_ a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vulgare), peroxidase 1 [TaxId: 4513]} Length = 309 Back     information, alignment and structure
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot basidiomycete (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 343 Back     information, alignment and structure
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 357 Back     information, alignment and structure
>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) {Arthromyces ramosus [TaxId: 5451]} Length = 336 Back     information, alignment and structure
>d1iyna_ a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 275 Back     information, alignment and structure
>d2euta1 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 291 Back     information, alignment and structure
>d1oafa_ a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glycine max) [TaxId: 3847]} Length = 250 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query273
d1fhfa_304 Plant peroxidase {Soybean (Glycine max) [TaxId: 38 100.0
d1pa2a_306 Plant peroxidase {Mouse-ear cress (Arabidopsis tha 100.0
d1scha_294 Plant peroxidase {Peanut (Arachis hypogaea) [TaxId 100.0
d1gwua_307 Plant peroxidase {Horseradish (Armoracia rusticana 100.0
d1qgja_300 Plant peroxidase {Mouse-ear cress (Arabidopsis tha 100.0
d1bgpa_309 Plant peroxidase {Barley (Hordeum vulgare), peroxi 100.0
d1iyna_275 Ascorbate peroxidase {Common tobacco (Nicotiana ta 100.0
d1yyda1357 Fungal peroxidase (ligninase) {Basidomycetos fungu 100.0
d2e39a1336 Fungal peroxidase (ligninase) {Arthromyces ramosus 100.0
d1oafa_250 Ascorbate peroxidase {Soybean (Glycine max) [TaxId 100.0
d2euta1291 Cytochrome c peroxidase, CCP {Baker's yeast (Sacch 100.0
d1llpa_343 Fungal peroxidase (ligninase) {White rot basidiomy 100.0
d1mwva2308 Catalase-peroxidase KatG {Burkholderia pseudomalle 100.0
d1itka1406 Catalase-peroxidase KatG {Archaeon Haloarcula mari 100.0
d1mwva1406 Catalase-peroxidase KatG {Burkholderia pseudomalle 100.0
d1itka2308 Catalase-peroxidase KatG {Archaeon Haloarcula mari 100.0
d1u2ka_292 Catalase-peroxidase KatG {Burkholderia pseudomalle 100.0
d1ub2a2294 Catalase-peroxidase KatG {Synechococcus sp. pcc 79 100.0
d2ccaa1410 Catalase-peroxidase KatG {Mycobacterium tuberculos 100.0
d1ub2a1406 Catalase-peroxidase KatG {Synechococcus sp. pcc 79 100.0
d2ccaa2285 Catalase-peroxidase KatG {Mycobacterium tuberculos 100.0
>d1fhfa_ a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure
class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: CCP-like
domain: Plant peroxidase
species: Soybean (Glycine max) [TaxId: 3847]

Probab=100.00  E-value=7.3e-94  Score=658.10  Aligned_cols=265  Identities=47%  Similarity=0.782  Sum_probs=255.7

Q ss_pred             ccchhHHHHHHhhccccCCCCCccccccCCCCCccccccCCCCCcchhHHHHHHHHHHHHhhCCCCccHHHHHHHhhhcc
Q 024025            9 CLFCVIISLKLFQLNDDNQGCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIAARDS   88 (273)
Q Consensus         9 ~~~~~~~llRl~FHDc~v~GcDgSill~~~~~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VScADiialAar~A   88 (273)
                      +...+|.||||+||||||+||||||||++++++.+|+++++|.++++||++|+.||++||+.||++||||||||||||+|
T Consensus        29 d~~~aa~llRL~FHDCfv~GCDgSill~~~~~~~~E~~~~~N~~~~~g~~~id~iK~~le~~cp~~VScADIlalAardA  108 (304)
T d1fhfa_          29 DPRIGASLMRLHFHDCFVQGCDGSVLLNNTDTIESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIA  108 (304)
T ss_dssp             CTTHHHHHHHHHHHHHTTTCSSSGGGCCCCSSCCCGGGSTTTTTTCCCHHHHHHHHHHHHTTSTTTSCHHHHHHHHHHHH
T ss_pred             CCchhHHHHHHHHHhhccCCCCeeEeecCCCCccccccCCcccccchhHHHHHHHHHHHHhhCCCccCHHHHHHHHHhhh
Confidence            47789999999999999999999999999888889999999998889999999999999999999999999999999999


Q ss_pred             cc-cCCcceeecCCCCCCCccccccccCCCCCCCCCHHHHHHHHHHcCCCchhhhhhcccccccccccccccccccC---
Q 024025           89 VV-FGGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYN---  164 (273)
Q Consensus        89 v~-~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~d~VaL~GaHtiG~~hc~~f~~Rl~~---  164 (273)
                      |+ +|||.|+|++||+|+++|+..++..+||.|+.++++|++.|+++||+.+|||||+||||||++||.+|.+|+|+   
T Consensus       109 v~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~d~VaLsGaHTiG~ahc~~~~~rl~~~~~  188 (304)
T d1fhfa_         109 SVLGGGPGWPVPLGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTFINRLYNFSN  188 (304)
T ss_dssp             HHTTTCCCCCCCBCCCBCSCCCHHHHHHHSCCTTCCHHHHHHHHHHTTCCHHHHHHHGGGGGSCEEEGGGTGGGTSCGGG
T ss_pred             hhhcCCCcccccCCCcCcCccccccccccCCCCCCCHHHHHHHHHHcCCCHHHHHHHhhhhhhcccccccccccccCCCC
Confidence            99 99999999999999999988777788999999999999999999999999999999999999999999999995   


Q ss_pred             ----CCCCCHHHHHHhhccCCCCCCCCccccCCCCCCcccChHHHHHHHhcCCccccchhcccCc--chHHHHHHHhhCh
Q 024025          165 ----DSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDNLYYKNLLNKKGLLHSDQELFNGN--SADFLVKRYAASI  238 (273)
Q Consensus       165 ----dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FDn~Yy~~l~~~~glL~SD~~L~~d~--~t~~~V~~yA~d~  238 (273)
                          ||.+++.|+..|+..||.++....++++|..||.+|||+||++++.++|+|+|||+|+.||  +|+++|++||.|+
T Consensus       189 ~~~~d~~~~~~~~~~L~~~c~~~~~~~~~~~~d~~tp~~fDn~Yy~~l~~~~glL~SD~~L~~dp~~~t~~~V~~yA~d~  268 (304)
T d1fhfa_         189 TGNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLSTPDQFDNRYYSNLLQLNGLLQSDQELFSTPGADTIPIVNSFSSNQ  268 (304)
T ss_dssp             SSSCCTTSCHHHHHHHHHHSCSSCSSCCEEESCSSSTTSCSTHHHHHHHTTCCSSHHHHTTTSSTTCSSHHHHHHHHHCH
T ss_pred             CCCCCcccCHHHHHHHHHhcCCCCCCCcccccCCCCCCccccHHHHHHhhcCcccHhhHHHHhCCCchHHHHHHHHhhCH
Confidence                8999999999999999987766778899999999999999999999999999999999996  6999999999999


Q ss_pred             hHHHHHHHHHHHHhhcCCCCCCCCCccccccccCC
Q 024025          239 SVFFKDFARGMIKMGNIKPLTGSAGQIRINCRKIN  273 (273)
Q Consensus       239 ~~F~~~Fa~am~Km~~lgv~tg~~GeIR~~C~~~N  273 (273)
                      ++|+++|++||+||++||||||.+|||||+|+++|
T Consensus       269 ~~F~~~F~~Am~Km~~lgv~tg~~GeiR~~C~~~N  303 (304)
T d1fhfa_         269 NTFFSNFRVSMIKMGNIGVLTGDEGEIRLQCNFVN  303 (304)
T ss_dssp             HHHHHHHHHHHHHHTTTTCCCTTSSBCCSBTTBCC
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCCcccCcccCcC
Confidence            99999999999999999999999999999999998
>d1pa2a_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase A2 [TaxId: 3702]} Back     information, alignment and structure
>d1scha_ a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hypogaea) [TaxId: 3818]} Back     information, alignment and structure
>d1gwua_ a.93.1.1 (A:) Plant peroxidase {Horseradish (Armoracia rusticana) [TaxId: 3704]} Back     information, alignment and structure
>d1qgja_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase N [TaxId: 3702]} Back     information, alignment and structure
>d1bgpa_ a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vulgare), peroxidase 1 [TaxId: 4513]} Back     information, alignment and structure
>d1iyna_ a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) {Arthromyces ramosus [TaxId: 5451]} Back     information, alignment and structure
>d1oafa_ a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure
>d2euta1 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot basidiomycete (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
>d1mwva2 a.93.1.3 (A:441-748) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1itka1 a.93.1.3 (A:18-423) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1mwva1 a.93.1.3 (A:35-440) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1itka2 a.93.1.3 (A:424-731) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1u2ka_ a.93.1.3 (A:) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1ub2a2 a.93.1.3 (A:427-720) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]} Back     information, alignment and structure
>d2ccaa1 a.93.1.3 (A:26-435) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1ub2a1 a.93.1.3 (A:21-426) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]} Back     information, alignment and structure
>d2ccaa2 a.93.1.3 (A:436-720) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure