Citrus Sinensis ID: 024043

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270---
Protein Sequence
MGDQIARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKELEEDDLT
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
MGDQIARAEEFEKKAEKKLNgwglfgskyedAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHcykktssneAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADmfqneevttsanQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDIAASMDEEDIAKFTDVVKefdsmtpldpwktTLLLRVKEKLKAKeleeddlt
Flexible Loop (DISEMBL)
MGDQIARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDIAASMDEEDIAKFTDVVKEFdsmtpldpwkttlllRVKEklkakeleeddlt
Low Complexity Region (SEG)
MGDQIARaeefekkaekkLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTlllrvkeklkakeleeddlT
Disordered region (IsUnstruct)
******************LNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDA************ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVK**************
Disordered Region (DISOPRED)
****IARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKA******DL*
Disordered Region (DISEMBL)
MGDQIARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKA*********
Disordered Region (DISPRO)
***QIARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKA*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGDQIARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSxxxxxxxxxxxxxxxxxxxxxIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKELEEDDLT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	273	2.2.26 [Sep-21-2011]
P93798	289	Alpha-soluble NSF attachm	yes	no	1.0	0.944	0.723	1e-113
Q9SPE6	289	Alpha-soluble NSF attachm	yes	no	1.0	0.944	0.747	1e-113
Q9M5P8	288	Alpha-soluble NSF attachm	N/A	no	0.996	0.944	0.702	1e-108
Q54NP6	291	Alpha-soluble NSF attachm	yes	no	0.956	0.896	0.443	6e-62
Q9LXZ5	381	Alpha-soluble NSF attachm	no	no	0.732	0.524	0.509	3e-57
Q23983	292	Soluble NSF attachment pr	yes	no	0.948	0.886	0.408	6e-55
P81125	295	Alpha-soluble NSF attachm	yes	no	0.890	0.823	0.395	9e-54
Q9DB05	295	Alpha-soluble NSF attachm	yes	no	0.890	0.823	0.391	4e-53
P28663	298	Beta-soluble NSF attachme	no	no	0.912	0.835	0.394	6e-53
Q9H115	298	Beta-soluble NSF attachme	yes	no	0.912	0.835	0.394	6e-53

>sp|P93798|SNAA_VITVI Alpha-soluble NSF attachment protein OS=Vitis vinifera PE=2 SV=1

 Score =  407 bits (1045), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/289 (72%), Positives = 237/289 (82%), Gaps = 16/289 (5%)

Query: 1   MGDQIARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLA 60
           M D I R EEFEKKAEKK++GWGLFGSKYEDAAD +DKAAN FKLAKSWD+AG+TYVKL+
Sbjct: 1   MADNIQRGEEFEKKAEKKISGWGLFGSKYEDAADFYDKAANCFKLAKSWDRAGSTYVKLS 60

Query: 61  NCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAE 120
                 +SKHEAAQAY DA HCYKKTS+ EAISCLEQA  +F D GR +MA +YYKEIAE
Sbjct: 61  TVIQSSDSKHEAAQAYADAGHCYKKTSAKEAISCLEQAAYLFLDNGRFNMAGKYYKEIAE 120

Query: 121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180
           LYE E N EQ I++FEKAAD++Q+EE TT+ANQC  KVAQ+AA+LEQY K+I+IYE+I R
Sbjct: 121 LYELEQNFEQAIIYFEKAADIYQSEEATTAANQCNAKVAQFAAQLEQYQKAIQIYEDIGR 180

Query: 181 QSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ----------------DIAA 224
            SLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNAL+RYQ                D+AA
Sbjct: 181 PSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALDRYQEMDPTFSGTREYKLLVDLAA 240

Query: 225 SMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKELEEDDLT 273
           ++DEED+ KFTD VKEFDSMT LD WKTTLLLRVKE +KAKELEEDDLT
Sbjct: 241 AVDEEDVVKFTDAVKEFDSMTQLDAWKTTLLLRVKEAIKAKELEEDDLT 289

Required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus.
Vitis vinifera (taxid: 29760)

>sp|Q9SPE6|SNAA2_ARATH Alpha-soluble NSF attachment protein 2 OS=Arabidopsis thaliana GN=ASNAP2 PE=1 SV=1

 Score =  407 bits (1045), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/289 (74%), Positives = 246/289 (85%), Gaps = 16/289 (5%)

Query: 1   MGDQIARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLA 60
           MGD + RAEEFEKKAEKKLNGWG+FGSKYEDAADL +KAANS+KLAKSWD+AG  Y+KLA
Sbjct: 1   MGDHLVRAEEFEKKAEKKLNGWGIFGSKYEDAADLLEKAANSYKLAKSWDQAGKAYLKLA 60

Query: 61  NCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAE 120
           +CHLK +SKH+AA AY +AA CYKK  +NEA SCLE+AVN+FC+IGRL+MAARYYKEIAE
Sbjct: 61  DCHLKSDSKHDAANAYAEAAKCYKKVDTNEAASCLERAVNIFCEIGRLNMAARYYKEIAE 120

Query: 121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180
            YES+   EQ I +FEKAA+ FQNEEVTTSANQC  KVAQYAA+LEQY K+I+IYE+IAR
Sbjct: 121 YYESDQKFEQAIAYFEKAAEFFQNEEVTTSANQCNLKVAQYAAQLEQYEKAIKIYEDIAR 180

Query: 181 QSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ----------------DIAA 224
            SLNNNLLKYGVKGHLL AG+C LCK DVV+ITNALE+YQ                D+A+
Sbjct: 181 HSLNNNLLKYGVKGHLLTAGMCHLCKADVVSITNALEKYQDLDPTFTGTRECKFLADLAS 240

Query: 225 SMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKELEEDDLT 273
           ++DEEDIAKFTDVVKEFDSMTPLD WKTT+LLRVKEKLKAKELEEDDLT
Sbjct: 241 AIDEEDIAKFTDVVKEFDSMTPLDSWKTTMLLRVKEKLKAKELEEDDLT 289

Required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus. Binds to SNARE complex and then recruits NSF to disassemble it.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M5P8|SNAA_SOLTU Alpha-soluble NSF attachment protein OS=Solanum tuberosum PE=2 SV=1

 Score =  392 bits (1006), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/289 (70%), Positives = 233/289 (80%), Gaps = 17/289 (5%)

Query: 1   MGDQIARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLA 60
           MGD IAR E+FE KAEKKL GW LFGSKYEDAADLFDKA N FKLAKSWDKAGA YVKLA
Sbjct: 1   MGDHIARGEDFENKAEKKLGGWALFGSKYEDAADLFDKAGNCFKLAKSWDKAGAVYVKLA 60

Query: 61  NCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAE 120
           NCHLKL+SKHEAA AY DAAHCYKK++  EA+SCLEQAVN F DIGRL+M+ARYYKEIAE
Sbjct: 61  NCHLKLDSKHEAANAYADAAHCYKKSNIKEAVSCLEQAVNFFLDIGRLNMSARYYKEIAE 120

Query: 121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180
           LYE E N++Q I +     +   +E+V+   NQC +K+AQ++A+ E+Y K+IEI+EEIAR
Sbjct: 121 LYEQEQNLDQAIRYAVYEINP-GSEDVSAPPNQCLKKIAQFSAQNEKYPKAIEIFEEIAR 179

Query: 181 QSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ----------------DIAA 224
            S+NNNLLKYGV+ HLLNAGICQLCKGDVV I NALERYQ                D+AA
Sbjct: 180 HSVNNNLLKYGVREHLLNAGICQLCKGDVVPINNALERYQELDPTFSGTRECKLLVDLAA 239

Query: 225 SMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKELEEDDLT 273
           ++DEED+AKFTD VKE+DSMT LD W+TTLLLRVKE LKAKELEEDDLT
Sbjct: 240 AIDEEDVAKFTDAVKEYDSMTQLDAWRTTLLLRVKETLKAKELEEDDLT 288

Required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus.

Solanum tuberosum (taxid: 4113)

>sp|Q54NP6|SNAA_DICDI Alpha-soluble NSF attachment protein OS=Dictyostelium discoideum GN=snpA PE=1 SV=1

 Score =  237 bits (605), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 126/284 (44%), Positives = 184/284 (64%), Gaps = 23/284 (8%)

Query: 1   MGDQIARAEEFEKKAEKKLNGWGLF------GSKYEDAADLFDKAANSFKLAKSWDKAGA 54
           MGD  A+A+EF   A+K+L G   F       S+Y+DAA  + KAAN FK++K WD+AGA
Sbjct: 1   MGDD-AKAKEFLDAADKRLRGGNFFKMFGGGSSRYDDAASDYTKAANLFKMSKKWDQAGA 59

Query: 55  TYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARY 114
            + K A C LK  SKH+AA +YV AA CYKK +  +AI+CL+ A+  + D GR +++A++
Sbjct: 60  AFQKAAECFLKGSSKHDAASSYVLAAGCYKKGNVIDAITCLKAAIEYYTDEGRFAISAKH 119

Query: 115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEI 174
            KEIAELYE+E + +Q I  ++ A+D F  E  T S++QC  K+A ++A+LE+Y KSIEI
Sbjct: 120 QKEIAELYEAEGDFDQAIASYQIASDYFDGENSTVSSHQCLLKIALFSAQLERYEKSIEI 179

Query: 175 YEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDIAASMDE------ 228
           YE++A  SL+NNL ++G K + L A +C L   DVV    AL+RY+D+ AS +       
Sbjct: 180 YEQVAAASLDNNLTQWGCKEYFLRACLCYLAADDVVGAERALQRYKDMQASFNSTRECRL 239

Query: 229 ----------EDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKL 262
                      ++  FT+ V EF+S++PLD WKT++LLR+K  +
Sbjct: 240 LDGIIQACRNNNVEDFTNEVAEFNSISPLDSWKTSILLRIKNTI 283

May be required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus (By similarity). Involved in vesicle fusion with nsfA and probably SNARE proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9LXZ5|SNAA1_ARATH Alpha-soluble NSF attachment protein 1 OS=Arabidopsis thaliana GN=ASNAP1 PE=1 SV=1

 Score =  221 bits (564), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 129/253 (50%), Positives = 156/253 (61%), Gaps = 53/253 (20%)

Query: 11  FEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKH 70
           F+KKAEKKLN    F +KYEDAADL +KA +S+KLAKSWD+AG  Y+KLA+CHLK  S  
Sbjct: 99  FQKKAEKKLNRRRRFDTKYEDAADLLEKARDSYKLAKSWDQAGIAYLKLADCHLKANS-- 156

Query: 71  EAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQ 130
             A  Y+    C                                  EIAE YES+   EQ
Sbjct: 157 -LANTYMIMDECMD-------------------------------HEIAEYYESDEMFEQ 184

Query: 131 TIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY 190
            I ++E AA+ FQ EEVTTSANQC  KVAQYA++LEQ  + ++     AR SLNN LLKY
Sbjct: 185 AIAYYETAAEFFQIEEVTTSANQCNLKVAQYASQLEQQSRFMKTQ---ARHSLNNKLLKY 241

Query: 191 GVKGHLLNAGICQLCKGDVVAITNALERYQ----------------DIAASMDEEDIAKF 234
           GVKGHLL AG+C LCK DVV+ITNALE+YQ                D+A+++DEEDIAKF
Sbjct: 242 GVKGHLLTAGMCHLCKADVVSITNALEKYQDLDPTFSGTRECKFLADLASAIDEEDIAKF 301

Query: 235 TDVVKEFDSMTPL 247
           TDV KE DS++PL
Sbjct: 302 TDVSKEIDSVSPL 314

Required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus. Binds to SNARE complex and then recruits NSF to disassemble it.

Arabidopsis thaliana (taxid: 3702)

>sp|Q23983|SNAP_DROME Soluble NSF attachment protein OS=Drosophila melanogaster GN=Snap PE=1 SV=1

 Score =  214 bits (545), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 116/284 (40%), Positives = 186/284 (65%), Gaps = 25/284 (8%)

Query: 1   MGDQIARAEEFEKKAEKKLN---GW--GLFG--SKYEDAADLFDKAANSFKLAKSWDKAG 53
           MGD   +A +   +AEKKL    G+   LFG  +K EDA + + +A N FK++K+W KAG
Sbjct: 1   MGDNEQKALQLMAEAEKKLTQQKGFLGSLFGGSNKVEDAIECYQRAGNMFKMSKNWTKAG 60

Query: 54  ATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAAR 113
             + + A  H +  S+H+A   YVDA++CYKK     A++CL ++++++ D+GR +MAA+
Sbjct: 61  ECFCEAATLHARAGSRHDAGTCYVDASNCYKKVDVESAVNCLMKSIDIYTDMGRFTMAAK 120

Query: 114 YYKEIAELYESE-HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSI 172
           +++ IAE+YES+ +N+ ++I  +E+AAD F+ EE  +SAN+C  KVAQYAA+LE Y K+I
Sbjct: 121 HHQSIAEMYESDPNNLAKSIQHYEQAADYFKGEESVSSANKCMLKVAQYAAQLEDYEKAI 180

Query: 173 EIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY-------QD---- 221
            IYE++A  SL ++LLKY  K +   A +C L   D++   +A+E+Y       QD    
Sbjct: 181 SIYEQVAASSLESSLLKYSAKEYFFRAALCHL-SVDLLNAQHAIEKYAQQYPAFQDSREF 239

Query: 222 -----IAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKE 260
                +  +++E++I  FT+ VK++DS++ LD W TT+LLR+K+
Sbjct: 240 KLIKVLCENLEEQNIEGFTEAVKDYDSISRLDQWYTTILLRIKK 283

Required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus. Also between the endosome and phagosome.

Drosophila melanogaster (taxid: 7227)

>sp|P81125|SNAA_BOVIN Alpha-soluble NSF attachment protein OS=Bos taurus GN=NAPA PE=1 SV=1

 Score =  210 bits (534), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 104/263 (39%), Positives = 177/263 (67%), Gaps = 20/263 (7%)

Query: 23  GLFG--SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAA 80
           GLFG  SK E+A +++ +AAN FK+AK+W  AG+ + + A+ HL+L+SKH+AA  +VDA 
Sbjct: 30  GLFGGSSKIEEACEIYARAANMFKMAKNWSAAGSAFCQAAHVHLQLQSKHDAATCFVDAG 89

Query: 81  HCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH-NIEQTIVFFEKAA 139
           + +KK    EAI+CL +A+ ++ D+GR ++AA+++  IAE+YE+E  +IE+ I  +E++A
Sbjct: 90  NAFKKADPQEAINCLMRAIEIYTDMGRFTIAAKHHISIAEIYETELVDIEKAIAHYEQSA 149

Query: 140 DMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNA 199
           D ++ EE  +SAN+C  KVA YAA+LEQY K+I+IYE++   ++++ LLKY  K +   A
Sbjct: 150 DYYKGEESNSSANKCLLKVAGYAAQLEQYQKAIDIYEQVGTNAMDSPLLKYSAKDYFFKA 209

Query: 200 GICQLCKGDVVAITNALERYQDIAASM----------------DEEDIAKFTDVVKEFDS 243
            +C  C  D++    A+++Y+++  +                 +E+++  +T+ VKE+DS
Sbjct: 210 ALCHFCI-DMLNAKLAVQKYEELFPAFSDSRECKRIKKLLEAHEEQNVDSYTEAVKEYDS 268

Query: 244 MTPLDPWKTTLLLRVKEKLKAKE 266
           ++ LD W TT+LLR+K+ ++  E
Sbjct: 269 ISRLDQWLTTMLLRIKKTIQGDE 291

Required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus.

Bos taurus (taxid: 9913)

>sp|Q9DB05|SNAA_MOUSE Alpha-soluble NSF attachment protein OS=Mus musculus GN=Napa PE=1 SV=1

 Score =  208 bits (529), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 103/263 (39%), Positives = 175/263 (66%), Gaps = 20/263 (7%)

Query: 23  GLFG--SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAA 80
           GLFG  SK E+A +++ +AAN FK+AK+W  AG  + + A  HL+L+SKH+AA  +VDA 
Sbjct: 30  GLFGGSSKIEEACEIYARAANMFKMAKNWSAAGNAFCQAAQLHLQLQSKHDAATCFVDAG 89

Query: 81  HCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH-NIEQTIVFFEKAA 139
           + +KK    EAI+CL +A+ ++ D+GR ++AA+++  IAE+YE+E  ++E+ I  +E++A
Sbjct: 90  NAFKKADPQEAINCLMRAIEIYTDMGRFTIAAKHHISIAEIYETELVDVEKAIAHYEQSA 149

Query: 140 DMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNA 199
           D ++ EE  +SAN+C  KVA YAA+LEQY K+I+IYE++   ++++ LLKY  K +   A
Sbjct: 150 DYYKGEESNSSANKCLLKVAGYAAQLEQYQKAIDIYEQVGTSAMDSPLLKYSAKDYFFKA 209

Query: 200 GICQLCKGDVVAITNALERYQDIAASM----------------DEEDIAKFTDVVKEFDS 243
            +C  C  D++    A+++Y+++  +                 +E+++  +T+ VKE+DS
Sbjct: 210 ALCHFCI-DMLNAKLAVQKYEELFPAFSDSRECKLMKKLLEAHEEQNVDSYTEAVKEYDS 268

Query: 244 MTPLDPWKTTLLLRVKEKLKAKE 266
           ++ LD W TT+LLR+K+ ++  E
Sbjct: 269 ISRLDQWLTTMLLRIKKTIQGDE 291

Required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus.

Mus musculus (taxid: 10090)

>sp|P28663|SNAB_MOUSE Beta-soluble NSF attachment protein OS=Mus musculus GN=Napb PE=1 SV=2

 Score =  207 bits (527), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 106/269 (39%), Positives = 176/269 (65%), Gaps = 20/269 (7%)

Query: 23  GLFG--SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAA 80
           GLFG  ++ E+A +++ +AAN FK+AK+W  AG  + + A  H++L+SKH++A ++VDA 
Sbjct: 30  GLFGGNTRIEEACEMYTRAANMFKMAKNWSAAGNAFCQAAKLHMQLQSKHDSATSFVDAG 89

Query: 81  HCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH-NIEQTIVFFEKAA 139
           + YKK    EAI+CL  A++++ D+GR ++AA+++  IAE+YE+E  +IE+ I  +E++A
Sbjct: 90  NAYKKADPQEAINCLNAAIDIYTDMGRFTIAAKHHITIAEIYETELVDIEKAIAHYEQSA 149

Query: 140 DMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNA 199
           D ++ EE  +SAN+C  KVA YAA+LEQY K+IEIYE++   +++N LLKY  K +   A
Sbjct: 150 DYYKGEESNSSANKCLLKVAAYAAQLEQYQKAIEIYEQVGANTMDNPLLKYSAKDYFFKA 209

Query: 200 GICQLCKGDVVAITNALERYQDIAASM----------------DEEDIAKFTDVVKEFDS 243
            +C     ++ A   ALE+Y+++  +                 +E++   +T+ VKEFDS
Sbjct: 210 ALCHFIVDELNAKL-ALEKYEEMFPAFTDSRECKLLKKLLEAHEEQNSEAYTEAVKEFDS 268

Query: 244 MTPLDPWKTTLLLRVKEKLKAKELEEDDL 272
           ++ LD W TT+LLR+K+ ++     + DL
Sbjct: 269 ISRLDQWLTTMLLRIKKSIQGDGEGDGDL 297

Required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus.

Mus musculus (taxid: 10090)

>sp|Q9H115|SNAB_HUMAN Beta-soluble NSF attachment protein OS=Homo sapiens GN=NAPB PE=1 SV=2

 Score =  207 bits (527), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 106/269 (39%), Positives = 176/269 (65%), Gaps = 20/269 (7%)

Query: 23  GLFG--SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAA 80
           GLFG  ++ E+A +++ +AAN FK+AK+W  AG  + + A  H++L+SKH++A ++VDA 
Sbjct: 30  GLFGGNTRIEEACEMYTRAANMFKMAKNWSAAGNAFCQAAKLHMQLQSKHDSATSFVDAG 89

Query: 81  HCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH-NIEQTIVFFEKAA 139
           + YKK    EAI+CL  A++++ D+GR ++AA+++  IAE+YE+E  +IE+ I  +E++A
Sbjct: 90  NAYKKADPQEAINCLNAAIDIYTDMGRFTIAAKHHITIAEIYETELVDIEKAIAHYEQSA 149

Query: 140 DMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNA 199
           D ++ EE  +SAN+C  KVA YAA+LEQY K+IEIYE++   +++N LLKY  K +   A
Sbjct: 150 DYYKGEESNSSANKCLLKVAAYAAQLEQYQKAIEIYEQVGANTMDNPLLKYSAKDYFFKA 209

Query: 200 GICQLCKGDVVAITNALERYQDIAASM----------------DEEDIAKFTDVVKEFDS 243
            +C     ++ A   ALE+Y+++  +                 +E++   +T+ VKEFDS
Sbjct: 210 ALCHFIVDELNAKL-ALEKYEEMFPAFTDSRECKLLKKLLEAHEEQNSEAYTEAVKEFDS 268

Query: 244 MTPLDPWKTTLLLRVKEKLKAKELEEDDL 272
           ++ LD W TT+LLR+K+ ++     + DL
Sbjct: 269 ISRLDQWLTTMLLRIKKSIQGDGEGDGDL 297

Required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	273
211906448	289	alpha-soluble NSF attachment protein [Go	1.0	0.944	0.816	1e-135
255638429	289	unknown [Glycine max]	1.0	0.944	0.816	1e-134
357461465	289	Alpha-soluble NSF attachment protein [Me	1.0	0.944	0.799	1e-133
357492899	289	Alpha-soluble NSF attachment protein [Me	1.0	0.944	0.792	1e-132
388516595	289	unknown [Lotus japonicus]	1.0	0.944	0.826	1e-129
255559601	289	alpha-soluble nsf attachment protein, pu	1.0	0.944	0.823	1e-129
224101229	288	predicted protein [Populus trichocarpa]	0.992	0.940	0.794	1e-129
356540024	289	PREDICTED: alpha-soluble NSF attachment	1.0	0.944	0.823	1e-129
409691608	289	alpha-SNAP protein [Glycine max]	1.0	0.944	0.823	1e-128
356501195	289	PREDICTED: alpha-soluble NSF attachment	1.0	0.944	0.761	1e-128

>gi|211906448|gb|ACJ11717.1| alpha-soluble NSF attachment protein [Gossypium hirsutum]

 Score =  485 bits (1249), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 236/289 (81%), Positives = 259/289 (89%), Gaps = 16/289 (5%)

Query: 1   MGDQIARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLA 60
           MGDQ+A+ EEF KKAEKKLNGWGLF SKYEDAADLFDKAAN FKLAKSWDKAG+TYVKLA
Sbjct: 1   MGDQLAKGEEFVKKAEKKLNGWGLFSSKYEDAADLFDKAANCFKLAKSWDKAGSTYVKLA 60

Query: 61  NCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAE 120
           NCHLK +SKHE AQAYVDAAHCYKKT++ EAISCL+QAVN+FCDIGRLSMAARYYKEIAE
Sbjct: 61  NCHLKSDSKHETAQAYVDAAHCYKKTATKEAISCLQQAVNLFCDIGRLSMAARYYKEIAE 120

Query: 121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180
           LYESE NIEQ + +FEKAAD FQNE+V++SANQCKQKVAQ+AA++EQY K+IEIYEEIAR
Sbjct: 121 LYESEQNIEQAMDYFEKAADFFQNEDVSSSANQCKQKVAQFAAQIEQYQKAIEIYEEIAR 180

Query: 181 QSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ----------------DIAA 224
           QSL NNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ                DIA+
Sbjct: 181 QSLTNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDLDPTFSGTREYKLLADIAS 240

Query: 225 SMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKELEEDDLT 273
           ++DEED++KFT+VVKEFDSMTPLD WKTTLLLRVKEKLKAKELEEDDLT
Sbjct: 241 AIDEEDVSKFTEVVKEFDSMTPLDSWKTTLLLRVKEKLKAKELEEDDLT 289

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638429|gb|ACU19524.1| unknown [Glycine max]

 Score =  482 bits (1241), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 236/289 (81%), Positives = 260/289 (89%), Gaps = 16/289 (5%)

Query: 1   MGDQIARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLA 60
           M DQ+++  EFEKKAEKKL+GWGLFGSKYEDAADLFDKAAN FKLAKSWDKAGATY+KLA
Sbjct: 1   MADQLSKGGEFEKKAEKKLSGWGLFGSKYEDAADLFDKAANCFKLAKSWDKAGATYLKLA 60

Query: 61  NCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAE 120
           +CHLKLESKHEAAQA+VDAAHCYKKT+ NE++SCL++AVN+FCDIGRLSMAARY KEIAE
Sbjct: 61  SCHLKLESKHEAAQAHVDAAHCYKKTNINESVSCLDRAVNLFCDIGRLSMAARYLKEIAE 120

Query: 121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180
           LYE E NIEQ +V++EK+AD FQNEEVTTSANQCKQKVAQ+AA+LEQY KSI+IYEEIAR
Sbjct: 121 LYEGEQNIEQALVYYEKSADFFQNEEVTTSANQCKQKVAQFAAQLEQYQKSIDIYEEIAR 180

Query: 181 QSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ----------------DIAA 224
           QSLNNNLLKYGVKGHLLNAGICQLCK DVVAIT+ALERYQ                DIAA
Sbjct: 181 QSLNNNLLKYGVKGHLLNAGICQLCKEDVVAITDALERYQELDPTFSGTREYRLLADIAA 240

Query: 225 SMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKELEEDDLT 273
           ++DEED+AKFTDVVKEFDSMTPLD WKTTLLLRVKEKLKAKELEEDDLT
Sbjct: 241 AIDEEDVAKFTDVVKEFDSMTPLDSWKTTLLLRVKEKLKAKELEEDDLT 289

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357461465|ref|XP_003601014.1| Alpha-soluble NSF attachment protein [Medicago truncatula] gi|217071842|gb|ACJ84281.1| unknown [Medicago truncatula] gi|355490062|gb|AES71265.1| Alpha-soluble NSF attachment protein [Medicago truncatula] gi|388493040|gb|AFK34586.1| unknown [Medicago truncatula]

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 231/289 (79%), Positives = 258/289 (89%), Gaps = 16/289 (5%)

Query: 1   MGDQIARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLA 60
           M D +ARAE+FEKKAEKKL+GWGLF SKY+DAADLFDK+ANSFKLAKSWDKA ATY+KLA
Sbjct: 1   MADHLARAEDFEKKAEKKLSGWGLFSSKYDDAADLFDKSANSFKLAKSWDKAAATYLKLA 60

Query: 61  NCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAE 120
           NCHLK+ESKHEAAQAYVDA+HCYKKT+ +EA+SCL+ AVN+FCDIGRLSMAARY KEIAE
Sbjct: 61  NCHLKMESKHEAAQAYVDASHCYKKTNISEAVSCLDHAVNLFCDIGRLSMAARYLKEIAE 120

Query: 121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180
           LYESE NIEQ +V+FEK+AD +QNEEVTTSANQCKQKVAQ++A+LEQY  SI+IYEEIAR
Sbjct: 121 LYESEQNIEQAVVYFEKSADFYQNEEVTTSANQCKQKVAQFSAQLEQYQTSIDIYEEIAR 180

Query: 181 QSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ----------------DIAA 224
           QSLNNNLLKYGVKGHLLNAGICQLCKGD VAI+NALERYQ                D+AA
Sbjct: 181 QSLNNNLLKYGVKGHLLNAGICQLCKGDPVAISNALERYQELDPTFSGTREYRLLADVAA 240

Query: 225 SMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKELEEDDLT 273
           ++DEED+ KFTDVVK+FDSMTPLD WKTTLLLRVKEKLKAKELEEDDLT
Sbjct: 241 AVDEEDVGKFTDVVKDFDSMTPLDSWKTTLLLRVKEKLKAKELEEDDLT 289

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357492899|ref|XP_003616738.1| Alpha-soluble NSF attachment protein [Medicago truncatula] gi|355518073|gb|AES99696.1| Alpha-soluble NSF attachment protein [Medicago truncatula]

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 229/289 (79%), Positives = 258/289 (89%), Gaps = 16/289 (5%)

Query: 1   MGDQIARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLA 60
           MGDQ+ARAE+FE KAEKKL GWG+FGSK+EDAADLFDK+AN +KLAKSWDKAG+TY+KLA
Sbjct: 1   MGDQLARAEDFENKAEKKLGGWGMFGSKFEDAADLFDKSANCYKLAKSWDKAGSTYIKLA 60

Query: 61  NCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAE 120
           NCH+KLESKHEAA AYVDAAHCYKKT+ NEAISCL+ AVNMFCDIGR+SMAARY KEIAE
Sbjct: 61  NCHVKLESKHEAASAYVDAAHCYKKTNMNEAISCLDNAVNMFCDIGRISMAARYLKEIAE 120

Query: 121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180
           + ESE NIE+ +V++EK+AD +++EEVTTSANQCKQKVAQY+A+LEQY KSIEIYEEIAR
Sbjct: 121 MCESEQNIERALVYYEKSADFYESEEVTTSANQCKQKVAQYSAQLEQYQKSIEIYEEIAR 180

Query: 181 QSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ----------------DIAA 224
           QSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ                D+AA
Sbjct: 181 QSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQELDPTFSGTREYRLLADVAA 240

Query: 225 SMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKELEEDDLT 273
           ++DEED+ KFT+VVKEFDSM+PLD WKTTL LRVKEKLKAKELEEDDLT
Sbjct: 241 AIDEEDVGKFTEVVKEFDSMSPLDSWKTTLFLRVKEKLKAKELEEDDLT 289

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516595|gb|AFK46359.1| unknown [Lotus japonicus]

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 239/289 (82%), Positives = 262/289 (90%), Gaps = 16/289 (5%)

Query: 1   MGDQIARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLA 60
           M DQ+++AEEFEKKAEKKLNGWGLFGSKYEDA+DLFDKAANSFKLAKSWDKAG+TY++LA
Sbjct: 1   MADQLSKAEEFEKKAEKKLNGWGLFGSKYEDASDLFDKAANSFKLAKSWDKAGSTYLRLA 60

Query: 61  NCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAE 120
           +CHLKLESKHEAAQAYVDAAHCYKKT+  EA+SCL+ AVN+FCDIGRLSMAARY KEIAE
Sbjct: 61  SCHLKLESKHEAAQAYVDAAHCYKKTNIKEAVSCLDHAVNIFCDIGRLSMAARYLKEIAE 120

Query: 121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180
           L+ESE NIEQ +V+FEKAAD FQNEEVTTSANQCKQKVAQ+AA+LEQY KSIEIYEEIAR
Sbjct: 121 LHESEQNIEQAVVYFEKAADFFQNEEVTTSANQCKQKVAQFAAQLEQYQKSIEIYEEIAR 180

Query: 181 QSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ----------------DIAA 224
           QSL+NNLLKYGVKGHLLNAGICQLCKGDVVAI+NALERYQ                DIAA
Sbjct: 181 QSLSNNLLKYGVKGHLLNAGICQLCKGDVVAISNALERYQELDPTFSGTREYRLLADIAA 240

Query: 225 SMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKELEEDDLT 273
           ++DEED+ KFTDVVK+FDSMTPLD WKTTLLLRVKEKLKAKELEEDDLT
Sbjct: 241 TLDEEDVVKFTDVVKDFDSMTPLDSWKTTLLLRVKEKLKAKELEEDDLT 289

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559601|ref|XP_002520820.1| alpha-soluble nsf attachment protein, putative [Ricinus communis] gi|223539951|gb|EEF41529.1| alpha-soluble nsf attachment protein, putative [Ricinus communis]

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 238/289 (82%), Positives = 260/289 (89%), Gaps = 16/289 (5%)

Query: 1   MGDQIARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLA 60
           M DQIA+ EEFEKKAEKKLNGWGLFGSKYEDA+DLFDKAANSFKLAKSWD+AG+TYVKLA
Sbjct: 1   MSDQIAKGEEFEKKAEKKLNGWGLFGSKYEDASDLFDKAANSFKLAKSWDRAGSTYVKLA 60

Query: 61  NCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAE 120
           NCHLKL+SKHEAAQAYVDAAHCYKKT++NEAISCL QAV MFCDIGR+SMAARYYKEIAE
Sbjct: 61  NCHLKLDSKHEAAQAYVDAAHCYKKTTTNEAISCLGQAVEMFCDIGRISMAARYYKEIAE 120

Query: 121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180
           LYESE N+E+ + F+EKAAD FQ EEVTTSANQCKQKVAQ+AA+LEQY K+IEIYEEIAR
Sbjct: 121 LYESEANVEKAMDFYEKAADFFQGEEVTTSANQCKQKVAQFAAQLEQYQKAIEIYEEIAR 180

Query: 181 QSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ----------------DIAA 224
            SL+NNLLKYGVKGHLLNAGIC LCKGDVV++TNALERYQ                D+AA
Sbjct: 181 HSLSNNLLKYGVKGHLLNAGICHLCKGDVVSVTNALERYQDLDPTFSGTREYRLLADVAA 240

Query: 225 SMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKELEEDDLT 273
           ++DEED+AKFTDVVKEFDSMTPLD WKTTLLLRVKEKLKAKELEEDDLT
Sbjct: 241 AIDEEDVAKFTDVVKEFDSMTPLDSWKTTLLLRVKEKLKAKELEEDDLT 289

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101229|ref|XP_002312193.1| predicted protein [Populus trichocarpa] gi|118483327|gb|ABK93565.1| unknown [Populus trichocarpa] gi|118486886|gb|ABK95277.1| unknown [Populus trichocarpa] gi|118487749|gb|ABK95698.1| unknown [Populus trichocarpa] gi|222852013|gb|EEE89560.1| predicted protein [Populus trichocarpa]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 228/287 (79%), Positives = 254/287 (88%), Gaps = 16/287 (5%)

Query: 3   DQIARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANC 62
           D  A+ ++FEKKAEKKLNGWG+FGSKYEDAADLFDKAAN+FKLAKSW+KAG+TYVKL  C
Sbjct: 2   DLAAKGDDFEKKAEKKLNGWGIFGSKYEDAADLFDKAANNFKLAKSWEKAGSTYVKLGQC 61

Query: 63  HLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELY 122
           HLKL+SKHEAA AYVDAAHCYKKTS+ EAISCL QAV+M CDIGR+SMAARY+KEIAELY
Sbjct: 62  HLKLDSKHEAASAYVDAAHCYKKTSTTEAISCLAQAVDMLCDIGRISMAARYFKEIAELY 121

Query: 123 ESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS 182
           ES+ NIE+++ +++KAAD FQNE+VTTSANQCKQKVA++AA+LEQY  SI+IYEEIARQS
Sbjct: 122 ESDANIEKSMEYYDKAADFFQNEDVTTSANQCKQKVAEFAAQLEQYQTSIDIYEEIARQS 181

Query: 183 LNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ----------------DIAASM 226
           L NNLLKYGVKGHLLNAGIC LCKGDVVAITNALERYQ                DIAA++
Sbjct: 182 LKNNLLKYGVKGHLLNAGICHLCKGDVVAITNALERYQEMDPTFSGTREYKLLADIAAAI 241

Query: 227 DEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKELEEDDLT 273
           DEEDIAKFTDVVKEFDSMTPLD WKTTLLLRVKEKLKAKELEEDDLT
Sbjct: 242 DEEDIAKFTDVVKEFDSMTPLDSWKTTLLLRVKEKLKAKELEEDDLT 288

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540024|ref|XP_003538491.1| PREDICTED: alpha-soluble NSF attachment protein-like [Glycine max]

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 238/289 (82%), Positives = 261/289 (90%), Gaps = 16/289 (5%)

Query: 1   MGDQIARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLA 60
           M DQ+++ EEFEKKAEKKL+GWGLFGSKYEDAADLFDKAAN FKLAKSWDKAGATY+KLA
Sbjct: 1   MADQLSKGEEFEKKAEKKLSGWGLFGSKYEDAADLFDKAANCFKLAKSWDKAGATYLKLA 60

Query: 61  NCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAE 120
           +CHLKLESKHEAAQA+VDAAH YKKT+ NE++SCL+QAVN+FCDIGRLSMAARY KEIAE
Sbjct: 61  SCHLKLESKHEAAQAHVDAAHSYKKTNINESVSCLDQAVNLFCDIGRLSMAARYLKEIAE 120

Query: 121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180
           LYE E NIEQ +V++EK+AD FQNEEVTTSANQCKQKVAQ+AA+LEQY KSIEIYEEIAR
Sbjct: 121 LYEGEQNIEQALVYYEKSADFFQNEEVTTSANQCKQKVAQFAAQLEQYQKSIEIYEEIAR 180

Query: 181 QSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ----------------DIAA 224
           QSLNNNLLKYGVKGHLLNAGICQLCKGDV+A+TNALERYQ                DIAA
Sbjct: 181 QSLNNNLLKYGVKGHLLNAGICQLCKGDVIAVTNALERYQELDPTFSGTREYRFLADIAA 240

Query: 225 SMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKELEEDDLT 273
           ++DEED+AKFTDVVKEFDSMTPLD WKTTLLLRVKEKLKAKELEEDDLT
Sbjct: 241 AIDEEDVAKFTDVVKEFDSMTPLDSWKTTLLLRVKEKLKAKELEEDDLT 289

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|409691608|gb|AFV36706.1| alpha-SNAP protein [Glycine max]

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 238/289 (82%), Positives = 261/289 (90%), Gaps = 16/289 (5%)

Query: 1   MGDQIARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLA 60
           M DQ+++ EEFEKKAEKKL+GWGLFGSKYEDAADLFDKAAN FKLAKSWDKAGATY+KLA
Sbjct: 1   MADQLSKGEEFEKKAEKKLSGWGLFGSKYEDAADLFDKAANCFKLAKSWDKAGATYLKLA 60

Query: 61  NCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAE 120
           +CHLKLESKHEAAQA+VDAAHCYKKT+ NE++SCL++AVN+FCDIGRLSMAARY KEIAE
Sbjct: 61  SCHLKLESKHEAAQAHVDAAHCYKKTNINESVSCLDRAVNLFCDIGRLSMAARYLKEIAE 120

Query: 121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180
           LYE E NIEQ +V++EK+AD FQNEEVTTSANQCKQKVAQ+AA+LEQY KSI+IYEEIAR
Sbjct: 121 LYEGEQNIEQALVYYEKSADFFQNEEVTTSANQCKQKVAQFAAQLEQYQKSIDIYEEIAR 180

Query: 181 QSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ----------------DIAA 224
           QSLNNNLLKYGVKGHLLNAGICQLCK DVVAITNALERYQ                DIAA
Sbjct: 181 QSLNNNLLKYGVKGHLLNAGICQLCKEDVVAITNALERYQELDPTFSGTREYRLLADIAA 240

Query: 225 SMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKELEEDDLT 273
           ++DEED+AKFTDVVKEFDSMTPLD WKTTLLLRVKEKLKAKELEEDDLT
Sbjct: 241 AIDEEDVAKFTDVVKEFDSMTPLDSWKTTLLLRVKEKLKAKELEEDDLT 289

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501195|ref|XP_003519412.1| PREDICTED: alpha-soluble NSF attachment protein 2-like [Glycine max]

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 220/289 (76%), Positives = 256/289 (88%), Gaps = 16/289 (5%)

Query: 1   MGDQIARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLA 60
           MGD +ARAE+FE KAEKKL+ WGLFGSK+EDAADLFDK+ANS+KLAKSWDKAG+TY+KLA
Sbjct: 1   MGDHLARAEDFENKAEKKLSSWGLFGSKFEDAADLFDKSANSYKLAKSWDKAGSTYIKLA 60

Query: 61  NCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAE 120
           +CHLKLESKHEAAQAYVDAA CYKKT+ NE++SCL+ AVN+FC+IGRLSMAARY KEIAE
Sbjct: 61  SCHLKLESKHEAAQAYVDAARCYKKTNINESVSCLDNAVNIFCEIGRLSMAARYLKEIAE 120

Query: 121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180
           LYESE NI Q + ++EK+AD F+NEEV TSANQCKQKVAQ++A+LEQY +SIEIYE+IAR
Sbjct: 121 LYESEQNISQAVAYYEKSADFFENEEVNTSANQCKQKVAQFSAQLEQYQRSIEIYEDIAR 180

Query: 181 QSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ----------------DIAA 224
           QSL+N LLKYGVKGHLLNAGIC+LCKGDV+AITNALERYQ                DIAA
Sbjct: 181 QSLSNTLLKYGVKGHLLNAGICELCKGDVIAITNALERYQDLDPTFSGTREYRLLADIAA 240

Query: 225 SMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKELEEDDLT 273
           ++DEED+ KFT+V+KEFDS+TPLD WKTTLLLRVK+KLKAKE+EEDDLT
Sbjct: 241 AIDEEDVGKFTEVIKEFDSLTPLDSWKTTLLLRVKDKLKAKEIEEDDLT 289

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	273
TAIR|locus:2078366	289	ALPHA-SNAP2 "AT3G56190" [Arabi	0.926	0.875	0.691	2.5e-97
DICTYBASE|DDB_G0285111	291	snpA "soluble NSF attachment p	0.857	0.804	0.446	1e-52
ZFIN|ZDB-GENE-060531-160	295	si:dkeyp-117b8.3 "si:dkeyp-117	0.835	0.772	0.419	1.7e-50
ZFIN|ZDB-GENE-030131-5290	295	napa "N-ethylmaleimide sensiti	0.838	0.776	0.421	5.8e-50
FB|FBgn0250791	292	Snap "Soluble NSF attachment p	0.838	0.784	0.409	1.2e-49
UNIPROTKB|P81125	295	NAPA "Alpha-soluble NSF attach	0.842	0.779	0.396	8.5e-49
UNIPROTKB|A5D7S0	295	NAPA "Alpha-soluble NSF attach	0.842	0.779	0.396	1.1e-48
UNIPROTKB|F1RLB6	295	NAPA "Uncharacterized protein"	0.842	0.779	0.396	2.3e-48
UNIPROTKB|E2RE59	298	NAPB "Uncharacterized protein"	0.842	0.771	0.404	2.9e-48
UNIPROTKB|E2RQE7	295	NAPA "Uncharacterized protein"	0.842	0.779	0.396	2.9e-48

TAIR|locus:2078366 ALPHA-SNAP2 "AT3G56190" [Arabidopsis thaliana (taxid:3702)]

 Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
 Identities = 186/269 (69%), Positives = 215/269 (79%)

Query:     1 MGDQIARXXXXXXXXXXXLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLA 60
             MGD + R           LNGWG+FGSKYEDAADL +KAANS+KLAKSWD+AG  Y+KLA
Sbjct:     1 MGDHLVRAEEFEKKAEKKLNGWGIFGSKYEDAADLLEKAANSYKLAKSWDQAGKAYLKLA 60

Query:    61 NCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAE 120
             +CHLK +SKH+AA AY +AA CYKK  +NEA SCLE+AVN+FC+IGRL+MAARYYKEIAE
Sbjct:    61 DCHLKSDSKHDAANAYAEAAKCYKKVDTNEAASCLERAVNIFCEIGRLNMAARYYKEIAE 120

Query:   121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180
              YES+   EQ I +FEKAA+ FQNEEVTTSANQC  KVAQYAA+LEQY K+I+IYE+IAR
Sbjct:   121 YYESDQKFEQAIAYFEKAAEFFQNEEVTTSANQCNLKVAQYAAQLEQYEKAIKIYEDIAR 180

Query:   181 QSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDI----------------AA 224
              SLNNNLLKYGVKGHLL AG+C LCK DVV+ITNALE+YQD+                A+
Sbjct:   181 HSLNNNLLKYGVKGHLLTAGMCHLCKADVVSITNALEKYQDLDPTFTGTRECKFLADLAS 240

Query:   225 SMDEEDIAKFTDVVKEFDSMTPLDPWKTT 253
             ++DEEDIAKFTDVVKEFDSMTPLD WKTT
Sbjct:   241 AIDEEDIAKFTDVVKEFDSMTPLDSWKTT 269

GO:0005483 "soluble NSF attachment protein activity" evidence=ISS

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

DICTYBASE|DDB_G0285111 snpA "soluble NSF attachment protein alpha isoform" [Dictyostelium discoideum (taxid:44689)]

 Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
 Identities = 113/253 (44%), Positives = 166/253 (65%)

Query:    20 NGWGLFG---SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAY 76
             N + +FG   S+Y+DAA  + KAAN FK++K WD+AGA + K A C LK  SKH+AA +Y
Sbjct:    22 NFFKMFGGGSSRYDDAASDYTKAANLFKMSKKWDQAGAAFQKAAECFLKGSSKHDAASSY 81

Query:    77 VDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFE 136
             V AA CYKK +  +AI+CL+ A+  + D GR +++A++ KEIAELYE+E + +Q I  ++
Sbjct:    82 VLAAGCYKKGNVIDAITCLKAAIEYYTDEGRFAISAKHQKEIAELYEAEGDFDQAIASYQ 141

Query:   137 KAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHL 196
              A+D F  E  T S++QC  K+A ++A+LE+Y KSIEIYE++A  SL+NNL ++G K + 
Sbjct:   142 IASDYFDGENSTVSSHQCLLKIALFSAQLERYEKSIEIYEQVAAASLDNNLTQWGCKEYF 201

Query:   197 LNAGICQLCKGDVVAITNALERYQDIAASMDE----------------EDIAKFTDVVKE 240
             L A +C L   DVV    AL+RY+D+ AS +                  ++  FT+ V E
Sbjct:   202 LRACLCYLAADDVVGAERALQRYKDMQASFNSTRECRLLDGIIQACRNNNVEDFTNEVAE 261

Query:   241 FDSMTPLDPWKTT 253
             F+S++PLD WKT+
Sbjct:   262 FNSISPLDSWKTS 274

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005483 "soluble NSF attachment protein activity" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ZFIN|ZDB-GENE-060531-160 si:dkeyp-117b8.3 "si:dkeyp-117b8.3" [Danio rerio (taxid:7955)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 104/248 (41%), Positives = 163/248 (65%)

Query:    25 FGS--KYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHC 82
             FGS  + E+A D++ +AAN FK+AK+W+ AG  + K A  HLK++SKH AA  ++DA + 
Sbjct:    32 FGSSSRVEEACDMYVRAANMFKMAKNWNAAGDAFCKAALLHLKVDSKHNAAMNFLDAGNA 91

Query:    83 YKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH-NIEQTIVFFEKAADM 141
             +KK    EAI C  +A++++ D+GR ++AA+++  +AE+YESE  +I++ I  +E+AAD 
Sbjct:    92 FKKADPQEAIGCFSRAIDIYTDMGRFNIAAKHHISVAEIYESELLDIDKAIAHYEQAADY 151

Query:   142 FQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGI 201
             ++ EE T++AN+C  KVA YAA+LEQY K+IEI+E+I   S++  LLKYG K H   A +
Sbjct:   152 YKGEESTSAANKCLLKVANYAAQLEQYQKAIEIFEQIGTYSMDTTLLKYGAKDHFFKAAL 211

Query:   202 CQLCKGDVVAITNALERYQDIAASM----------------DEEDIAKFTDVVKEFDSMT 245
             C  C  D++    A+++Y+D+  +                 DE++I  + D V+EFDS+T
Sbjct:   212 CHFCV-DMLNCRLAVQKYEDMFPAFSDARECKLLKKLLDAHDEQNIDAYADAVREFDSIT 270

Query:   246 PLDPWKTT 253
              LD W+TT
Sbjct:   271 RLDQWQTT 278

GO:0006886 "intracellular protein transport" evidence=IEA

ZFIN|ZDB-GENE-030131-5290 napa "N-ethylmaleimide sensitive fusion protein attachment protein alpha" [Danio rerio (taxid:7955)]

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 105/249 (42%), Positives = 168/249 (67%)

Query:    24 LFG--SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAH 81
             LFG  SK EDA DL+ +AAN FK+AK+W  AG  + + A  HL+++SKH+AA  ++DA +
Sbjct:    31 LFGGSSKMEDACDLYGRAANMFKMAKNWSAAGNAFSQAALLHLQMQSKHDAATNFIDAGN 90

Query:    82 CYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH-NIEQTIVFFEKAAD 140
              +KK+   EAI+CL +A+ ++ D+GR ++AA+++  IAE+YE+E  +I++ I  +E+AAD
Sbjct:    91 AFKKSDPQEAINCLNRAIEIYTDMGRFTIAAKHHVTIAEVYETELVDIDKAIAHYEQAAD 150

Query:   141 MFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAG 200
              ++ EE T+SAN+C  KVA YAA+LEQY K+IEIYE++A  ++++ LLKY  K +   A 
Sbjct:   151 YYKGEESTSSANKCLLKVATYAAQLEQYPKAIEIYEQVATHAMDSTLLKYSAKDYFFKAA 210

Query:   201 ICQLCKGDVVAITNALERYQDI--AAS--------------MDEEDIAKFTDVVKEFDSM 244
             +C  C  D++    AL++Y+++  A S               +E+++  +TD VKE+D++
Sbjct:   211 LCHFCV-DMLNAKLALQKYEEMFPAFSDSRECKLMKKLLDAFEEQNVDAYTDAVKEYDTI 269

Query:   245 TPLDPWKTT 253
             + LD W TT
Sbjct:   270 SRLDQWLTT 278

GO:0006886 "intracellular protein transport" evidence=IEA

FB|FBgn0250791 Snap "Soluble NSF attachment protein" [Drosophila melanogaster (taxid:7227)]

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 102/249 (40%), Positives = 165/249 (66%)

Query:    24 LFG--SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAH 81
             LFG  +K EDA + + +A N FK++K+W KAG  + + A  H +  S+H+A   YVDA++
Sbjct:    29 LFGGSNKVEDAIECYQRAGNMFKMSKNWTKAGECFCEAATLHARAGSRHDAGTCYVDASN 88

Query:    82 CYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE-HNIEQTIVFFEKAAD 140
             CYKK     A++CL ++++++ D+GR +MAA++++ IAE+YES+ +N+ ++I  +E+AAD
Sbjct:    89 CYKKVDVESAVNCLMKSIDIYTDMGRFTMAAKHHQSIAEMYESDPNNLAKSIQHYEQAAD 148

Query:   141 MFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAG 200
              F+ EE  +SAN+C  KVAQYAA+LE Y K+I IYE++A  SL ++LLKY  K +   A 
Sbjct:   149 YFKGEESVSSANKCMLKVAQYAAQLEDYEKAISIYEQVAASSLESSLLKYSAKEYFFRAA 208

Query:   201 ICQLCKGDVVAITNALERY-------QD---------IAASMDEEDIAKFTDVVKEFDSM 244
             +C L   D++   +A+E+Y       QD         +  +++E++I  FT+ VK++DS+
Sbjct:   209 LCHLSV-DLLNAQHAIEKYAQQYPAFQDSREFKLIKVLCENLEEQNIEGFTEAVKDYDSI 267

Query:   245 TPLDPWKTT 253
             + LD W TT
Sbjct:   268 SRLDQWYTT 276

GO:0005483 "soluble NSF attachment protein activity" evidence=NAS

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0016082 "synaptic vesicle priming" evidence=NAS

GO:0019898 "extrinsic to membrane" evidence=NAS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=NAS

GO:0043679 "axon terminus" evidence=IDA

GO:0007268 "synaptic transmission" evidence=IMP

GO:0048526 "imaginal disc-derived wing expansion" evidence=IMP

GO:0001745 "compound eye morphogenesis" evidence=IMP

GO:0000910 "cytokinesis" evidence=IMP

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0006886 "intracellular protein transport" evidence=IMP

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IMP

GO:0048812 "neuron projection morphogenesis" evidence=IMP

GO:0031201 "SNARE complex" evidence=IDA

UNIPROTKB|P81125 NAPA "Alpha-soluble NSF attachment protein" [Bos taurus (taxid:9913)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 99/250 (39%), Positives = 167/250 (66%)

Query:    23 GLFG--SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAA 80
             GLFG  SK E+A +++ +AAN FK+AK+W  AG+ + + A+ HL+L+SKH+AA  +VDA 
Sbjct:    30 GLFGGSSKIEEACEIYARAANMFKMAKNWSAAGSAFCQAAHVHLQLQSKHDAATCFVDAG 89

Query:    81 HCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH-NIEQTIVFFEKAA 139
             + +KK    EAI+CL +A+ ++ D+GR ++AA+++  IAE+YE+E  +IE+ I  +E++A
Sbjct:    90 NAFKKADPQEAINCLMRAIEIYTDMGRFTIAAKHHISIAEIYETELVDIEKAIAHYEQSA 149

Query:   140 DMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNA 199
             D ++ EE  +SAN+C  KVA YAA+LEQY K+I+IYE++   ++++ LLKY  K +   A
Sbjct:   150 DYYKGEESNSSANKCLLKVAGYAAQLEQYQKAIDIYEQVGTNAMDSPLLKYSAKDYFFKA 209

Query:   200 GICQLCKGDVVAITNALERYQDIAASM----------------DEEDIAKFTDVVKEFDS 243
              +C  C  D++    A+++Y+++  +                 +E+++  +T+ VKE+DS
Sbjct:   210 ALCHFCI-DMLNAKLAVQKYEELFPAFSDSRECKRIKKLLEAHEEQNVDSYTEAVKEYDS 268

Query:   244 MTPLDPWKTT 253
             ++ LD W TT
Sbjct:   269 ISRLDQWLTT 278

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|A5D7S0 NAPA "Alpha-soluble NSF attachment protein" [Bos taurus (taxid:9913)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 99/250 (39%), Positives = 166/250 (66%)

Query:    23 GLFG--SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAA 80
             GLFG  SK E+A +++ +AAN FK+AK+W  AG+ + + A  HL+L+SKH+AA  +VDA 
Sbjct:    30 GLFGGSSKIEEACEIYARAANMFKMAKNWSAAGSAFCQAAQLHLQLQSKHDAATCFVDAG 89

Query:    81 HCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH-NIEQTIVFFEKAA 139
             + +KK    EAI+CL +A+ ++ D+GR ++AA+++  IAE+YE+E  +IE+ I  +E++A
Sbjct:    90 NAFKKADPQEAINCLMRAIEIYTDMGRFTIAAKHHISIAEIYETELVDIEKAIAHYEQSA 149

Query:   140 DMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNA 199
             D ++ EE  +SAN+C  KVA YAA+LEQY K+I+IYE++   ++++ LLKY  K +   A
Sbjct:   150 DYYKGEESNSSANKCLLKVAGYAAQLEQYQKAIDIYEQVGTNAMDSPLLKYSAKDYFFKA 209

Query:   200 GICQLCKGDVVAITNALERYQDIAASM----------------DEEDIAKFTDVVKEFDS 243
              +C  C  D++    A+++Y+++  +                 +E+++  +T+ VKE+DS
Sbjct:   210 ALCHFCI-DMLNAKLAVQKYEELFPAFSDSRECKLMKKLLEAHEEQNVDSYTEAVKEYDS 268

Query:   244 MTPLDPWKTT 253
             ++ LD W TT
Sbjct:   269 ISRLDQWLTT 278

GO:0070044 "synaptobrevin 2-SNAP-25-syntaxin-1a complex" evidence=IEA

GO:0045176 "apical protein localization" evidence=IEA

GO:0035494 "SNARE complex disassembly" evidence=IEA

GO:0035249 "synaptic transmission, glutamatergic" evidence=IEA

GO:0030182 "neuron differentiation" evidence=IEA

GO:0019905 "syntaxin binding" evidence=IEA

GO:0010807 "regulation of synaptic vesicle priming" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|F1RLB6 NAPA "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 99/250 (39%), Positives = 165/250 (66%)

Query:    23 GLFG--SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAA 80
             GLFG  SK E+A +++ +AAN FK+AK+W  AG  + + A  HL+L+SKH+AA  +VDA 
Sbjct:    30 GLFGGSSKIEEACEIYARAANMFKMAKNWSAAGNAFCQAAQLHLQLQSKHDAATCFVDAG 89

Query:    81 HCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH-NIEQTIVFFEKAA 139
             + +KK    EAI+CL +A+ ++ D+GR ++AA+++  IAE+YE+E  +IE+ I  +E++A
Sbjct:    90 NAFKKADPQEAINCLMRAIEIYTDMGRFTIAAKHHISIAEIYETELVDIEKAIAHYEQSA 149

Query:   140 DMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNA 199
             D ++ EE  +SAN+C  KVA YAA+LEQY K+I+IYE++   ++++ LLKY  K +   A
Sbjct:   150 DYYKGEESNSSANKCLLKVAGYAAQLEQYQKAIDIYEQVGTNAMDSPLLKYSAKDYFFKA 209

Query:   200 GICQLCKGDVVAITNALERYQDIAASM----------------DEEDIAKFTDVVKEFDS 243
              +C  C  D++    A+++Y+++  +                 +E+++  +T+ VKE+DS
Sbjct:   210 ALCHFCI-DMLNAKLAVQKYEELFPAFSDSREYKLMKKLLEAHEEQNVDSYTEAVKEYDS 268

Query:   244 MTPLDPWKTT 253
             ++ LD W TT
Sbjct:   269 ISRLDQWLTT 278

GO:0070044 "synaptobrevin 2-SNAP-25-syntaxin-1a complex" evidence=IEA

GO:0045176 "apical protein localization" evidence=IEA

GO:0035494 "SNARE complex disassembly" evidence=IEA

GO:0035249 "synaptic transmission, glutamatergic" evidence=IEA

GO:0030182 "neuron differentiation" evidence=IEA

GO:0019905 "syntaxin binding" evidence=IEA

GO:0010807 "regulation of synaptic vesicle priming" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|E2RE59 NAPB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 101/250 (40%), Positives = 164/250 (65%)

Query:    23 GLFG--SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAA 80
             GLFG  +K E+A +++ +AAN FK+AK+W  AG  + + A  H++L+SKH++A ++VDA 
Sbjct:    30 GLFGGNTKIEEACEMYTRAANMFKMAKNWSAAGNAFCQAAKLHMQLQSKHDSATSFVDAG 89

Query:    81 HCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH-NIEQTIVFFEKAA 139
             + YKK    EAI+CL  A++++ D+GR ++AA+++  IAE+YE+E  +IE+ I  +E++A
Sbjct:    90 NAYKKADPQEAINCLNAAIDIYTDMGRFTIAAKHHITIAEIYETELVDIEKAIAHYEQSA 149

Query:   140 DMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNA 199
             D ++ EE  +SAN+C  KVA YAA+LEQY K+IEIYE++   +++N LLKY  K +   A
Sbjct:   150 DYYKGEESNSSANKCLLKVAAYAAQLEQYQKAIEIYEQVGANTMDNPLLKYSAKDYFFKA 209

Query:   200 GICQLCKGDVVAITNALERYQDIAASM----------------DEEDIAKFTDVVKEFDS 243
              +C     ++ A   ALE+Y+++  +                 +E++   +T+ VKEFDS
Sbjct:   210 ALCHFIVDELNAKL-ALEKYEEMFPAFTDSRECKLLKKLLEAHEEQNSEAYTEAVKEFDS 268

Query:   244 MTPLDPWKTT 253
             ++ LD W TT
Sbjct:   269 ISRLDQWLTT 278

GO:0070044 "synaptobrevin 2-SNAP-25-syntaxin-1a complex" evidence=IEA

GO:0035494 "SNARE complex disassembly" evidence=IEA

GO:0035249 "synaptic transmission, glutamatergic" evidence=IEA

GO:0019905 "syntaxin binding" evidence=IEA

GO:0010807 "regulation of synaptic vesicle priming" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|E2RQE7 NAPA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 99/250 (39%), Positives = 165/250 (66%)

Query:    23 GLFG--SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAA 80
             GLFG  SK E+A +++ +AAN FK+AK+W  AG  + + A  HL+L+SKH+AA  +VDA 
Sbjct:    30 GLFGGSSKIEEACEIYTRAANMFKMAKNWSAAGNAFCQAAQLHLQLQSKHDAATCFVDAG 89

Query:    81 HCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH-NIEQTIVFFEKAA 139
             + +KK    EAI+CL +A+ ++ D+GR ++AA+++  IAE+YE+E  +IE+ I  +E++A
Sbjct:    90 NAFKKADPQEAINCLMRAIEIYTDMGRFTIAAKHHISIAEIYETELVDIEKAIAHYEQSA 149

Query:   140 DMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNA 199
             D ++ EE  +SAN+C  KVA YAA+LEQY K+I+IYE++   ++++ LLKY  K +   A
Sbjct:   150 DYYKGEESNSSANKCLLKVAGYAAQLEQYQKAIDIYEQVGTNAMDSPLLKYSAKDYFFKA 209

Query:   200 GICQLCKGDVVAITNALERYQDIAASM----------------DEEDIAKFTDVVKEFDS 243
              +C  C  D++    A+++Y+++  +                 +E++I  +T+ VKE+D+
Sbjct:   210 ALCHFCI-DMLNAKLAVQKYEELFPAFSGSRECTLMKKLLDAHEEQNIDSYTEAVKEYDT 268

Query:   244 MTPLDPWKTT 253
             ++ LD W TT
Sbjct:   269 ISRLDQWLTT 278

GO:0070044 "synaptobrevin 2-SNAP-25-syntaxin-1a complex" evidence=IEA

GO:0045176 "apical protein localization" evidence=IEA

GO:0035494 "SNARE complex disassembly" evidence=IEA

GO:0035249 "synaptic transmission, glutamatergic" evidence=IEA

GO:0030182 "neuron differentiation" evidence=IEA

GO:0019905 "syntaxin binding" evidence=IEA

GO:0010807 "regulation of synaptic vesicle priming" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P93798	SNAA_VITVI	No assigned EC number	0.7231	1.0	0.9446	yes	no
Q9H115	SNAB_HUMAN	No assigned EC number	0.3940	0.9120	0.8355	yes	no
Q75D68	SEC17_ASHGO	No assigned EC number	0.3195	0.9706	0.9106	yes	no
Q9SPE6	SNAA2_ARATH	No assigned EC number	0.7474	1.0	0.9446	yes	no
Q54NP6	SNAA_DICDI	No assigned EC number	0.4436	0.9560	0.8969	yes	no
P85969	SNAB_RAT	No assigned EC number	0.3940	0.9084	0.8350	yes	no
Q9P4D0	SEC17_PICPG	No assigned EC number	0.3030	0.9853	0.9057	yes	no
Q9P4X4	SEC17_SCHPO	No assigned EC number	0.3264	0.9743	0.9204	yes	no
Q23983	SNAP_DROME	No assigned EC number	0.4084	0.9487	0.8869	yes	no
Q9DB05	SNAA_MOUSE	No assigned EC number	0.3916	0.8901	0.8237	yes	no
Q9M5P8	SNAA_SOLTU	No assigned EC number	0.7024	0.9963	0.9444	N/A	no
P81125	SNAA_BOVIN	No assigned EC number	0.3954	0.8901	0.8237	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	273
KOG1586	288	consensus Protein required for fusion of vesicles	100.0
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	100.0
KOG1585	308	consensus Protein required for fusion of vesicles	99.97
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.79
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.75
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.74
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.71
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.7
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.68
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.66
KOG1586	288	consensus Protein required for fusion of vesicles	99.57
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.5
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.49
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.44
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.41
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.41
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.41
KOG1585	308	consensus Protein required for fusion of vesicles	99.39
KOG1126	638	consensus DNA-binding cell division cycle control	99.39
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.35
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.35
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.34
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.34
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.32
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.29
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.29
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.29
KOG2003	840	consensus TPR repeat-containing protein [General f	99.25
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.23
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.23
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.22
PRK12370	553	invasion protein regulator; Provisional	99.22
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.19
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.19
PRK11189	296	lipoprotein NlpI; Provisional	99.16
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.12
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.1
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.1
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.1
KOG1126	638	consensus DNA-binding cell division cycle control	99.09
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.09
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.05
PRK12370	553	invasion protein regulator; Provisional	99.05
PRK04841	903	transcriptional regulator MalT; Provisional	99.05
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.04
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.04
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.03
PRK11189	296	lipoprotein NlpI; Provisional	99.02
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.0
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.97
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.93
PRK04841	903	transcriptional regulator MalT; Provisional	98.93
PRK15359	144	type III secretion system chaperone protein SscB;	98.91
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.91
KOG1129	478	consensus TPR repeat-containing protein [General f	98.89
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.89
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.87
PRK15359	144	type III secretion system chaperone protein SscB;	98.84
KOG1129	478	consensus TPR repeat-containing protein [General f	98.84
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.82
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.81
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.8
KOG2003	840	consensus TPR repeat-containing protein [General f	98.8
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.78
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.77
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.75
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.74
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.74
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.73
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.71
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.67
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.67
KOG1125	579	consensus TPR repeat-containing protein [General f	98.65
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.64
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.63
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.63
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.61
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.61
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.57
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.56
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.55
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.54
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.54
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.53
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.53
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.52
KOG1125	579	consensus TPR repeat-containing protein [General f	98.52
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.49
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.49
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.46
KOG0553	304	consensus TPR repeat-containing protein [General f	98.45
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.45
PF12688	120	TPR_5: Tetratrico peptide repeat	98.43
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.42
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.42
PRK10803	263	tol-pal system protein YbgF; Provisional	98.42
PRK14574	822	hmsH outer membrane protein; Provisional	98.41
PLN02789	320	farnesyltranstransferase	98.4
PF12688	120	TPR_5: Tetratrico peptide repeat	98.39
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.38
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.37
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.37
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.36
PLN02789	320	farnesyltranstransferase	98.36
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	98.34
KOG2076	895	consensus RNA polymerase III transcription factor	98.34
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.33
PRK14574	822	hmsH outer membrane protein; Provisional	98.33
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.32
PLN03218	1060	maturation of RBCL 1; Provisional	98.32
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.32
PLN03077	857	Protein ECB2; Provisional	98.31
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.28
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.28
KOG0553	304	consensus TPR repeat-containing protein [General f	98.28
PRK10803	263	tol-pal system protein YbgF; Provisional	98.28
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.25
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.25
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.24
KOG2076	895	consensus RNA polymerase III transcription factor	98.24
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.22
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.21
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.21
PLN03218	1060	maturation of RBCL 1; Provisional	98.19
KOG4555	175	consensus TPR repeat-containing protein [Function	98.19
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.16
PRK15331	165	chaperone protein SicA; Provisional	98.12
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.12
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.11
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	98.1
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.08
KOG4555	175	consensus TPR repeat-containing protein [Function	97.99
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	97.98
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.96
KOG3024	312	consensus Uncharacterized conserved protein [Funct	97.95
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.93
PLN03077	857	Protein ECB2; Provisional	97.92
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.91
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	97.88
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.87
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.86
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	97.86
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.84
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.82
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.8
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.8
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.8
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.79
KOG2581	493	consensus 26S proteasome regulatory complex, subun	97.79
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.77
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.74
PF13512	142	TPR_18: Tetratricopeptide repeat	97.74
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.74
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.72
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.72
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.71
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.71
PF13371	73	TPR_9: Tetratricopeptide repeat	97.71
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.7
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.68
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.68
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.67
KOG4234	271	consensus TPR repeat-containing protein [General f	97.67
KOG3616	1636	consensus Selective LIM binding factor [Transcript	97.66
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.66
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.66
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.65
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.64
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.6
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.59
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.58
KOG4234	271	consensus TPR repeat-containing protein [General f	97.58
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.57
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.56
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.56
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.55
KOG3616	1636	consensus Selective LIM binding factor [Transcript	97.53
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.5
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.48
PRK15331	165	chaperone protein SicA; Provisional	97.47
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	97.47
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	97.41
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.39
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.37
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.35
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	97.32
KOG2300	629	consensus Uncharacterized conserved protein [Funct	97.31
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	97.27
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.24
KOG2047	835	consensus mRNA splicing factor [RNA processing and	97.22
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.2
PF13371	73	TPR_9: Tetratricopeptide repeat	97.18
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.18
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.16
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.14
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.12
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.09
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.07
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.05
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.05
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.04
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.03
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.02
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.01
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.01
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	97.01
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.95
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	96.93
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.93
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	96.92
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.9
COG5159	421	RPN6 26S proteasome regulatory complex component [	96.89
PRK11906	458	transcriptional regulator; Provisional	96.89
PF13512	142	TPR_18: Tetratricopeptide repeat	96.83
COG4783	484	Putative Zn-dependent protease, contains TPR repea	96.71
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.68
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	96.62
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.61
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	96.6
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	96.58
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	96.55
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.48
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.44
KOG4648	536	consensus Uncharacterized conserved protein, conta	96.4
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.39
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	96.39
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.35
KOG2047	835	consensus mRNA splicing factor [RNA processing and	96.34
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	96.33
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.3
KOG1463	411	consensus 26S proteasome regulatory complex, subun	96.29
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.29
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.27
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	96.25
PF13428	44	TPR_14: Tetratricopeptide repeat	96.24
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.19
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	96.19
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	96.15
PF13431	34	TPR_17: Tetratricopeptide repeat	96.14
PRK11906	458	transcriptional regulator; Provisional	96.11
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.06
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.05
PF13431	34	TPR_17: Tetratricopeptide repeat	95.92
PF13428	44	TPR_14: Tetratricopeptide repeat	95.9
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	95.83
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.78
KOG1550	552	consensus Extracellular protein SEL-1 and related	95.76
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	95.74
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	95.73
PF08626	1185	TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC	95.71
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.62
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	95.58
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.52
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	95.48
KOG4648	536	consensus Uncharacterized conserved protein, conta	95.4
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	95.4
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	95.36
KOG2908	380	consensus 26S proteasome regulatory complex, subun	95.31
KOG2041	1189	consensus WD40 repeat protein [General function pr	95.28
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	95.21
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.17
KOG2471	696	consensus TPR repeat-containing protein [General f	94.99
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	94.67
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	94.62
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	94.61
KOG2300	629	consensus Uncharacterized conserved protein [Funct	94.6
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	94.59
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	94.56
KOG2581	493	consensus 26S proteasome regulatory complex, subun	94.53
KOG4322	482	consensus Anaphase-promoting complex (APC), subuni	94.49
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	94.48
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	94.32
KOG2796	366	consensus Uncharacterized conserved protein [Funct	94.25
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	93.75
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	93.51
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	93.46
KOG2471	696	consensus TPR repeat-containing protein [General f	93.39
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	93.19
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	92.96
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	92.85
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	92.73
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	92.58
KOG1550	552	consensus Extracellular protein SEL-1 and related	92.27
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	91.92
KOG4507	886	consensus Uncharacterized conserved protein, conta	91.68
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	91.67
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	91.51
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	91.45
KOG3364	149	consensus Membrane protein involved in organellar	91.44
KOG4507	886	consensus Uncharacterized conserved protein, conta	91.36
KOG2041	1189	consensus WD40 repeat protein [General function pr	91.32
KOG1915	677	consensus Cell cycle control protein (crooked neck	91.15
KOG1915	677	consensus Cell cycle control protein (crooked neck	91.11
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	90.97
COG5091	368	SGT1 Suppressor of G2 allele of skp1 and related p	90.73
KOG4814	872	consensus Uncharacterized conserved protein [Funct	90.6
PF04212	69	MIT: MIT (microtubule interacting and transport) d	90.53
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	90.44
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	90.27
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	89.92
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	89.86
KOG1497	399	consensus COP9 signalosome, subunit CSN4 [Posttran	89.84
PRK10941	269	hypothetical protein; Provisional	89.75
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	89.66
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	89.64
PF03635	762	Vps35: Vacuolar protein sorting-associated protein	89.58
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	89.47
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	89.45
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	89.4
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	88.56
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	88.52
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	88.17
KOG4814	872	consensus Uncharacterized conserved protein [Funct	87.71
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	87.67
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	87.49
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	87.43
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	87.4
COG5187	412	RPN7 26S proteasome regulatory complex component,	87.11
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	87.03
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	87.02
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	86.56
KOG0687	393	consensus 26S proteasome regulatory complex, subun	86.56
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	86.18
PF08626	1185	TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC	85.73
cd02656	75	MIT MIT: domain contained within Microtubule Inter	85.29
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	85.28
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	85.17
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	85.06
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	84.89
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	84.31
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	84.15
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	84.0
KOG1497	399	consensus COP9 signalosome, subunit CSN4 [Posttran	83.9
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	83.43
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	83.02
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	82.61
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	82.56
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	82.34
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	81.84
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	81.64
COG4976	287	Predicted methyltransferase (contains TPR repeat)	81.54
KOG4322	482	consensus Anaphase-promoting complex (APC), subuni	81.48
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	81.48
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	81.16
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	80.74
PF04212	69	MIT: MIT (microtubule interacting and transport) d	80.41
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	80.08

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-53  Score=339.26  Aligned_cols=265  Identities=55%  Similarity=0.940  Sum_probs=253.6

Q ss_pred             hhHHHHHHHHHHhhc---cccCCC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024043            6 ARAEEFEKKAEKKLN---GWGLFG--SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAA   80 (273)
Q Consensus         6 ~~a~~l~~~Aek~~k---~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~   80 (273)
                      .+|..++++|||+++   ||++||  +.|++|+++|.++++.|+..++|+.|+++|.++++++.+.|+.++++.+|..++
T Consensus         2 ~~a~~l~k~AEkK~~~s~gF~lfgg~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~   81 (288)
T KOG1586|consen    2 SDAVQLMKKAEKKLNGSGGFLLFGGSNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAA   81 (288)
T ss_pred             ccHHHHHHHHHHhcccCCcccccCCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence            589999999999999   355665  799999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHH
Q 024043           81 HCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE-HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVA  159 (273)
Q Consensus        81 ~~~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~-g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a  159 (273)
                      +||++.+|.+|++|+++|++||.+.|++..+|+....+|++|+.. .++++|+.+|++|.+.|.......+++.|+.++|
T Consensus        82 ~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA  161 (288)
T KOG1586|consen   82 NCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVA  161 (288)
T ss_pred             HHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHH
Confidence            999999999999999999999999999999999999999999997 8999999999999999999988899999999999


Q ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH----------------HHH
Q 024043          160 QYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ----------------DIA  223 (273)
Q Consensus       160 ~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~----------------~ll  223 (273)
                      ..-..+++|.+|+.+|++++..++++++.+|+++.+++++|+||++..|...+++++++|.                +|+
T Consensus       162 ~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~  241 (288)
T KOG1586|consen  162 QYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLL  241 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999998                789


Q ss_pred             HHHhhcCHhHHHHHHHhhhccCCCchhHHHHHHHHHHhccccccccCCCC
Q 024043          224 ASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKELEEDDLT  273 (273)
Q Consensus       224 ~a~~~~d~~~~~~~~~~~~~~~~ld~~~~~~l~~~~~~~~~~~~~~~~~~  273 (273)
                      ++++.+|.+.|++.|++||++++||.|.|+||++||++|++   ++|||+
T Consensus       242 ~aieE~d~e~fte~vkefDsisrLD~W~ttiLlkiK~siq~---~edDL~  288 (288)
T KOG1586|consen  242 DAIEEQDIEKFTEVVKEFDSISRLDQWKTTILLKIKKSIQG---DEDDLR  288 (288)
T ss_pred             HHHhhhhHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhc---cccccC
Confidence            99999999999999999999999999999999999999984   444664

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=100.00  E-value=2.9e-51  Score=352.03  Aligned_cols=258  Identities=48%  Similarity=0.820  Sum_probs=234.1

Q ss_pred             hhHHHHHHHHHHhhcc---c-cCCC---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024043            6 ARAEEFEKKAEKKLNG---W-GLFG---SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVD   78 (273)
Q Consensus         6 ~~a~~l~~~Aek~~k~---~-~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~   78 (273)
                      ++|++|+++|||++|+   | ++|+   |+|++|+++|.+||++|+..++|++|+++|.++++++.+.+++..++.+|.+
T Consensus         1 ~~a~~l~~~Aek~lk~~~~~~~~f~~~~~~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~   80 (282)
T PF14938_consen    1 QEAEELIKEAEKKLKKSSGFFSFFGSKKPDYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEE   80 (282)
T ss_dssp             -HHHHHHHHHHHHCS---TCCCHH--SCHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhccccchhhhcCCCCCCHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4899999999999993   2 3343   6999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhccCCcccHHHHHHH
Q 024043           79 AAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE-HNIEQTIVFFEKAADMFQNEEVTTSANQCKQK  157 (273)
Q Consensus        79 ~~~~~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~-g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~  157 (273)
                      ++.+|++.+|++|+++|++|+++|...|++..+|+++.++|.+|+.. |++++|+++|++|+++|+..+.+..+..++.+
T Consensus        81 Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~  160 (282)
T PF14938_consen   81 AANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLK  160 (282)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999 99999999999999999999999999999999


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH----------------H
Q 024043          158 VAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ----------------D  221 (273)
Q Consensus       158 ~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~----------------~  221 (273)
                      +|.++..+|+|++|+++|++++...+++++++++++.+++++++|+|..||++.|++++++|.                +
T Consensus       161 ~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~  240 (282)
T PF14938_consen  161 AADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLED  240 (282)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHH
Confidence            999999999999999999999988888888899999999999999999999999999999987                7


Q ss_pred             HHHHHhhcCHhHHHHHHHhhhccCCCchhHHHHHHHHHHhcc
Q 024043          222 IAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLK  263 (273)
Q Consensus       222 ll~a~~~~d~~~~~~~~~~~~~~~~ld~~~~~~l~~~~~~~~  263 (273)
                      ||++++.+|++.|+++|.+||++++||||+|+||++||++|+
T Consensus       241 l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~l~~~k~~~~  282 (282)
T PF14938_consen  241 LLEAYEEGDVEAFTEAVAEYDSISRLDNWKTKMLLKIKKKIE  282 (282)
T ss_dssp             HHHHHHTT-CCCHHHHCHHHTTSS---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHcccCccHHHHHHHHHHHHhhcC
Confidence            999999999999999999999999999999999999999884

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.2e-29  Score=202.19  Aligned_cols=246  Identities=19%  Similarity=0.231  Sum_probs=213.9

Q ss_pred             hHHHHHHHHHHhhc-cccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 024043            7 RAEEFEKKAEKKLN-GWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK   85 (273)
Q Consensus         7 ~a~~l~~~Aek~~k-~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~   85 (273)
                      .|.+-+.+|++++. ..++|++||+.|+..|.+|++.|+..++|++|..++.+|.+.++...+++.+|.+|+.++.+.++
T Consensus         4 ~aakki~ea~e~~a~t~~~wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake   83 (308)
T KOG1585|consen    4 DAAKKISEADEMTALTLTRWKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKE   83 (308)
T ss_pred             cHHHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            35566666666665 45679999999999999999999999999999999999999999999999999999999999999


Q ss_pred             c-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHH
Q 024043           86 T-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAE  164 (273)
Q Consensus        86 ~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~  164 (273)
                      . .+.|++.+|++|..+|.+.|.+..++.++.+.|.+++. .+|+.|++.|++++++++..++.+.+...+.+++.++++
T Consensus        84 ~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~len-v~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr  162 (308)
T KOG1585|consen   84 LSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALEN-VKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR  162 (308)
T ss_pred             HHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh
Confidence            9 89999999999999999999999999999999999998 899999999999999999999989999999999999999


Q ss_pred             hcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH---------------HHHHHHhhc
Q 024043          165 LEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ---------------DIAASMDEE  229 (273)
Q Consensus       165 ~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~---------------~ll~a~~~~  229 (273)
                      +.+|++|...+.+.+........ -.+....+..+.++||...|++.|..+++...               .||.+++.|
T Consensus       163 l~kf~Eaa~a~lKe~~~~~~~~~-y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~g  241 (308)
T KOG1585|consen  163 LEKFTEAATAFLKEGVAADKCDA-YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEG  241 (308)
T ss_pred             hHHhhHHHHHHHHhhhHHHHHhh-cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccC
Confidence            99999999999887532221110 01233345667889999999999999998733               799999999


Q ss_pred             CHhHHHHHHHhhhccCCCchhHHHHH
Q 024043          230 DIAKFTDVVKEFDSMTPLDPWKTTLL  255 (273)
Q Consensus       230 d~~~~~~~~~~~~~~~~ld~~~~~~l  255 (273)
                      |+|.++..+.. +.++.+|+--.++-
T Consensus       242 D~E~~~kvl~s-p~~r~MDneya~l~  266 (308)
T KOG1585|consen  242 DIEEIKKVLSS-PTVRNMDNEYAHLN  266 (308)
T ss_pred             CHHHHHHHHcC-hHhhhhhHHHHHHh
Confidence            99999998875 77788887755443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.79  E-value=5.5e-17  Score=139.51  Aligned_cols=197  Identities=22%  Similarity=0.303  Sum_probs=155.6

Q ss_pred             CHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q 024043           68 SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE  146 (273)
Q Consensus        68 ~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~  146 (273)
                      ++.+++..|..+|++|+.. ++++|.++|.+|.+++.+.+++..++.++.+.+.++.. +++++|+.+|++|+++|...|
T Consensus        30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G  108 (282)
T PF14938_consen   30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAG  108 (282)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT
T ss_pred             CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcC
Confidence            3455566666666666665 78899999999999999999999999999999999988 499999999999999999999


Q ss_pred             CcccHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH-----
Q 024043          147 VTTSANQCKQKVAQYAAEL-EQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ-----  220 (273)
Q Consensus       147 ~~~~~~~~~~~~a~~~~~~-g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~-----  220 (273)
                      ++..++.++.++|.+|... |++++|+++|++++....... .......++.+++.++...|++.+|...|++..     
T Consensus       109 ~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~  187 (282)
T PF14938_consen  109 RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE  187 (282)
T ss_dssp             -HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred             cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999 999999999999986544433 234566788899999999999999999998754     


Q ss_pred             --------------HHHHHHhhcCHhHHHHHHHhhhccCC--CchhHHHHHHHHHHhccccc
Q 024043          221 --------------DIAASMDEEDIAKFTDVVKEFDSMTP--LDPWKTTLLLRVKEKLKAKE  266 (273)
Q Consensus       221 --------------~ll~a~~~~d~~~~~~~~~~~~~~~~--ld~~~~~~l~~~~~~~~~~~  266 (273)
                                    .+|-.+..||+...+.++.+|....+  .++---+++..|-+.++.++
T Consensus       188 ~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D  249 (282)
T PF14938_consen  188 NNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGD  249 (282)
T ss_dssp             HCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-
T ss_pred             ccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCC
Confidence                          45556678999999999999876643  34444578888888887543

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.75  E-value=5.8e-15  Score=134.18  Aligned_cols=255  Identities=16%  Similarity=0.167  Sum_probs=205.3

Q ss_pred             HhhHHHHHHHHHHhhc-cccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHH
Q 024043            5 IARAEEFEKKAEKKLN-GWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKL-E-SKHEAAQAYVDAAH   81 (273)
Q Consensus         5 ~~~a~~l~~~Aek~~k-~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~-~-~~~~aa~~~~~~~~   81 (273)
                      .++|..+.+.|-..+. ++|   -+...-..+....|.+|...+++++|+..|++|+.+.+.. | +....+.++.+++.
T Consensus       215 ~e~A~~l~k~Al~~l~k~~G---~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~  291 (508)
T KOG1840|consen  215 LEKAEPLCKQALRILEKTSG---LKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAV  291 (508)
T ss_pred             HHHHHHHHHHHHHHHHHccC---ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            5678888888888765 543   3444444555578999999999999999999999999844 3 67788999999999


Q ss_pred             HHhcc-CHHHHHHHHHHHHHHHHh--cCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-CC-cccHHHHHH
Q 024043           82 CYKKT-SSNEAISCLEQAVNMFCD--IGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-EV-TTSANQCKQ  156 (273)
Q Consensus        82 ~~~~~-~~~eA~~~~~~Al~~~~~--~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~-~~-~~~~~~~~~  156 (273)
                      +|... ++.+|..|+++|++|+.+  .-+....+..+.+++.++...+++++|..+|+++++++... +. ....+.++.
T Consensus       292 ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~  371 (508)
T KOG1840|consen  292 LYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYA  371 (508)
T ss_pred             HHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHH
Confidence            99777 999999999999999987  24567789999999999999999999999999999999843 22 347789999


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHhccc-hhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcC---Hh
Q 024043          157 KVAQYAAELEQYHKSIEIYEEIARQSLNNN-LLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDIAASMDEED---IA  232 (273)
Q Consensus       157 ~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~a~~~~d---~~  232 (273)
                      ++|.+|..+|+|.+|.++|++++.+..... ...++....+.+++..+...+.+..|...|.++..|+.++..+.   ..
T Consensus       372 nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~  451 (508)
T KOG1840|consen  372 NLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTY  451 (508)
T ss_pred             HHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHH
Confidence            999999999999999999999985532211 12345566777888888888899999999999998887775543   35


Q ss_pred             HHHHHHHhhhccCCCchhHH--HHHHHHHHhc
Q 024043          233 KFTDVVKEFDSMTPLDPWKT--TLLLRVKEKL  262 (273)
Q Consensus       233 ~~~~~~~~~~~~~~ld~~~~--~~l~~~~~~~  262 (273)
                      .+.....-|+.+.+++.-.+  ..+.++++.-
T Consensus       452 ~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~  483 (508)
T KOG1840|consen  452 TYLNLAALYRAQGNYEAAEELEEKVLNAREQR  483 (508)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHc
Confidence            68888899999999988765  3344444433

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.74  E-value=1.7e-17  Score=149.12  Aligned_cols=206  Identities=21%  Similarity=0.279  Sum_probs=154.4

Q ss_pred             CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHH--------------HcCCHHHHHH----
Q 024043           27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHL--------------KLESKHEAAQ----   74 (273)
Q Consensus        27 ~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~~~~~--------------~~~~~~~aa~----   74 (273)
                      |+...|+..|.+|              |++|+..+.|+.|+.||++|+.+..              +.|...-+..    
T Consensus       232 Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykr  311 (966)
T KOG4626|consen  232 GEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKR  311 (966)
T ss_pred             chHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHH
Confidence            6777777777654              8888888888888888888876532              1222222322    


Q ss_pred             ----------HHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 024043           75 ----------AYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ  143 (273)
Q Consensus        75 ----------~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~  143 (273)
                                +|.++++..++. +..+|+.||.+|+.+....      |.+..|+|.++.++|..++|+.+|.+|++++.
T Consensus       312 al~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h------adam~NLgni~~E~~~~e~A~~ly~~al~v~p  385 (966)
T KOG4626|consen  312 ALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNH------ADAMNNLGNIYREQGKIEEATRLYLKALEVFP  385 (966)
T ss_pred             HHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHhccchHHHHHHHHHHhhCh
Confidence                      356777777666 7788888888887775543      45889999999999999999999999999985


Q ss_pred             ccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH---
Q 024043          144 NEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ---  220 (273)
Q Consensus       144 ~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~---  220 (273)
                      .      .+....++|.+|.++|++++|+.+|++++...+       ..+..+.++|.++-.+||...|..++.+.-   
T Consensus       386 ~------~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P-------~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n  452 (966)
T KOG4626|consen  386 E------FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKP-------TFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN  452 (966)
T ss_pred             h------hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCc-------hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC
Confidence            3      356788999999999999999999999975433       345678899999999999999999888754   


Q ss_pred             -HHHHH-----HhhcCHhHHHHHHHhhhccCCCchhH
Q 024043          221 -DIAAS-----MDEEDIAKFTDVVKEFDSMTPLDPWK  251 (273)
Q Consensus       221 -~ll~a-----~~~~d~~~~~~~~~~~~~~~~ld~~~  251 (273)
                       .+-+|     .-..|..-+.+++..|...-.|+|-+
T Consensus       453 Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDf  489 (966)
T KOG4626|consen  453 PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDF  489 (966)
T ss_pred             cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCC
Confidence             11121     12466667888888888777777654

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.71  E-value=8.3e-17  Score=138.72  Aligned_cols=210  Identities=13%  Similarity=0.216  Sum_probs=179.1

Q ss_pred             HHHHHHHHHHhhc-c-----ccCC------C-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 024043            8 AEEFEKKAEKKLN-G-----WGLF------G-SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQ   74 (273)
Q Consensus         8 a~~l~~~Aek~~k-~-----~~~~------~-~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~   74 (273)
                      -.+|-.++|+++| |     ..||      | .|+..-...|.+.|+.|...++|.+|++++.-=+.+.+-+|+..+.|.
T Consensus        17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAK   96 (639)
T KOG1130|consen   17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAK   96 (639)
T ss_pred             HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccc
Confidence            4577788899888 3     2344      2 466667778999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCC--------------------HHHHHH
Q 024043           75 AYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHN--------------------IEQTIV  133 (273)
Q Consensus        75 ~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~--------------------~~~A~~  133 (273)
                      +..++|++++-. .|++|+.|+.+-+.+.++.||....++++.++|.+|...|+                    ++.|++
T Consensus        97 ssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~  176 (639)
T KOG1130|consen   97 SSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVK  176 (639)
T ss_pred             ccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHH
Confidence            999999999887 99999999999999999999999999999999999987653                    567888


Q ss_pred             HHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHH--HHHHhccchhhhchhhHHHHHHHHHHhcCCHHH
Q 024043          134 FFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI--ARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVA  211 (273)
Q Consensus       134 ~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~  211 (273)
                      +|..-+++.+..|+......++-++|..|.-+|+|+.||...+.-  +....|+.   ...+..+.++|.||...|+++.
T Consensus       177 fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDr---AaeRRA~sNlgN~hiflg~fe~  253 (639)
T KOG1130|consen  177 FYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDR---AAERRAHSNLGNCHIFLGNFEL  253 (639)
T ss_pred             HHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhH---HHHHHhhcccchhhhhhcccHh
Confidence            888888888999988777899999999999999999999877654  35566663   3455677789999999999999


Q ss_pred             HHHHHHHHH
Q 024043          212 ITNALERYQ  220 (273)
Q Consensus       212 A~~~~~~~~  220 (273)
                      |.+++..-.
T Consensus       254 A~ehYK~tl  262 (639)
T KOG1130|consen  254 AIEHYKLTL  262 (639)
T ss_pred             HHHHHHHHH
Confidence            988887643

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.70  E-value=4.9e-16  Score=139.75  Aligned_cols=237  Identities=14%  Similarity=0.197  Sum_probs=169.5

Q ss_pred             HhhHHHHHHHHHHhhc------c-cc-CCC--CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHH
Q 024043            5 IARAEEFEKKAEKKLN------G-WG-LFG--SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLA   60 (273)
Q Consensus         5 ~~~a~~l~~~Aek~~k------~-~~-~~~--~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~   60 (273)
                      .+.|...+-+|-.+--      + .| +.+  |..++|..+|.+|              |.+|..+|+.-.|+..|++|.
T Consensus       166 ~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAv  245 (966)
T KOG4626|consen  166 LELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV  245 (966)
T ss_pred             CcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhh
Confidence            3456666666665332      1 12 223  7899999999987              678999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHH--------------HHhcCChhHHH-------------
Q 024043           61 NCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNM--------------FCDIGRLSMAA-------------  112 (273)
Q Consensus        61 ~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~--------------~~~~g~~~~~a-------------  112 (273)
                      .+-..      -..+|.++|++|++. .|++|+.||.+|+.+              |-+.|..+.+.             
T Consensus       246 kldP~------f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F  319 (966)
T KOG4626|consen  246 KLDPN------FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNF  319 (966)
T ss_pred             cCCCc------chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCc
Confidence            87432      245788888888887 888888888888663              22334444433             


Q ss_pred             -HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhc
Q 024043          113 -RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG  191 (273)
Q Consensus       113 -~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~  191 (273)
                       .++.|+|..+...|+..+|..+|.+|+.+-.      .-++++.++|.++.++|++++|+..|++++...++       
T Consensus       320 ~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p------~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-------  386 (966)
T KOG4626|consen  320 PDAYNNLANALKDKGSVTEAVDCYNKALRLCP------NHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-------  386 (966)
T ss_pred             hHHHhHHHHHHHhccchHHHHHHHHHHHHhCC------ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-------
Confidence             2566788888888888888888888887753      33577888888888888888888888888654333       


Q ss_pred             hhhHHHHHHHHHHhcCCHHHHHHHHHHHH----HHHHHHhh-cC----HhHHHHHHHhhhccCCCchhHHHHHHHHHH
Q 024043          192 VKGHLLNAGICQLCKGDVVAITNALERYQ----DIAASMDE-ED----IAKFTDVVKEFDSMTPLDPWKTTLLLRVKE  260 (273)
Q Consensus       192 ~~~~~~~~gl~~l~~gd~~~A~~~~~~~~----~ll~a~~~-~d----~~~~~~~~~~~~~~~~ld~~~~~~l~~~~~  260 (273)
                      ......+++.++..+|++..|..++++..    .+-+++.+ |+    ...++.++.+|...+.+.|-+......+..
T Consensus       387 ~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLas  464 (966)
T KOG4626|consen  387 FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLAS  464 (966)
T ss_pred             hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHH
Confidence            33456778888888888888888888765    22334422 33    456788888888888888888766665554

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.68  E-value=2.6e-14  Score=129.93  Aligned_cols=215  Identities=18%  Similarity=0.177  Sum_probs=182.1

Q ss_pred             hHhhHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH
Q 024043            4 QIARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKL--ESKHEAAQAYVDAAH   81 (273)
Q Consensus         4 ~~~~a~~l~~~Aek~~k~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~aa~~~~~~~~   81 (273)
                      .+.+|..++++|=.....  .||++.+..+..+...+.+|...|++++|..++++|.+++++.  -+....+..+.+++.
T Consensus       256 k~~eAv~ly~~AL~i~e~--~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~  333 (508)
T KOG1840|consen  256 KYDEAVNLYEEALTIREE--VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAA  333 (508)
T ss_pred             cHHHHHHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Confidence            467888888888887773  4788889999999999999999999999999999999999872  367888889999999


Q ss_pred             HHhcc-CHHHHHHHHHHHHHHHHh-cCChh-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC--cccHHHHHH
Q 024043           82 CYKKT-SSNEAISCLEQAVNMFCD-IGRLS-MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV--TTSANQCKQ  156 (273)
Q Consensus        82 ~~~~~-~~~eA~~~~~~Al~~~~~-~g~~~-~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~--~~~~~~~~~  156 (273)
                      ++... ++++|+.++++++.++.. .|... ..+..+.++|.+|..+|+|++|.++|++|+.+.++.+.  ....+..+.
T Consensus       334 ~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~  413 (508)
T KOG1840|consen  334 ILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLN  413 (508)
T ss_pred             HHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHH
Confidence            99877 999999999999999974 45555 78999999999999999999999999999999987644  466678899


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          157 KVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       157 ~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      ++|..+.++++|.+|..+|.+++.........-.++-..+.+++.+|-.+|.++.|.+..+...
T Consensus       414 ~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  414 QLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            9999999999999999999999644321111122455677899999999999999888777654

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.66  E-value=1.6e-15  Score=130.91  Aligned_cols=191  Identities=15%  Similarity=0.174  Sum_probs=162.5

Q ss_pred             CCHHHHHHHHHH--------------------HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Q 024043           27 SKYEDAADLFDK--------------------AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT   86 (273)
Q Consensus        27 ~~~~~A~~~~~~--------------------a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~   86 (273)
                      +||++|.++...                    .|+.++..|.|++|+.|..+-+++.+++|+....++++.++|++|...
T Consensus        69 ~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhak  148 (639)
T KOG1130|consen   69 KDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAK  148 (639)
T ss_pred             hhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhc
Confidence            799999887653                    378999999999999999999999999999999999999999999543


Q ss_pred             -------C--------------HHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 024043           87 -------S--------------SNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE  145 (273)
Q Consensus        87 -------~--------------~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~  145 (273)
                             .              ++.|+++|+.-+++.++.||...+++++-++|..|.-+|+|++|+...+.=++|.++-
T Consensus       149 Gk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef  228 (639)
T KOG1130|consen  149 GKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF  228 (639)
T ss_pred             ccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh
Confidence                   1              2467888888888889999999999999999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          146 EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA--RQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       146 ~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~--~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      |+......++.++|.+++-+|+++.|+++|.+..  ...+++..   -.+...+.+|..|....++..|..++++-.
T Consensus       229 GDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~---vEAQscYSLgNtytll~e~~kAI~Yh~rHL  302 (639)
T KOG1130|consen  229 GDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRT---VEAQSCYSLGNTYTLLKEVQKAITYHQRHL  302 (639)
T ss_pred             hhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchh---HHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            9988888999999999999999999999999985  55666632   233345666777666667777777776643

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=1.1e-12  Score=105.74  Aligned_cols=199  Identities=17%  Similarity=0.217  Sum_probs=147.1

Q ss_pred             cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc
Q 024043           46 AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE  125 (273)
Q Consensus        46 ~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~  125 (273)
                      .+.+++|.+.|.+|+.+|+-..+                   ...|-..|.+|.+++.+.|+.+.+|.++...+.+|.. 
T Consensus        27 ~~k~eeAadl~~~Aan~yklaK~-------------------w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-   86 (288)
T KOG1586|consen   27 SNKYEEAAELYERAANMYKLAKN-------------------WSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-   86 (288)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHh-------------------HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-
Confidence            34566666666666666654444                   4455555566666667788888889999999999998 


Q ss_pred             CCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHH
Q 024043          126 HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAE-LEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQL  204 (273)
Q Consensus       126 g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~-~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l  204 (273)
                      +++.+|+.++++|++||...|+.+.++.....+|.+|.. +.++++||.+|++++.-.-+... ..+...++++....--
T Consensus        87 ~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees-~ssANKC~lKvA~yaa  165 (288)
T KOG1586|consen   87 VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEES-VSSANKCLLKVAQYAA  165 (288)
T ss_pred             cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhh-hhhHHHHHHHHHHHHH
Confidence            799999999999999999999988888999999999975 48999999999999866555432 2344445555544334


Q ss_pred             hcCCHHHHHHHHHHHH-------------------HHHHHHhhcCHhHHHHHHHhhhccCCC--chhHHHHHHHHHHhcc
Q 024043          205 CKGDVVAITNALERYQ-------------------DIAASMDEEDIAKFTDVVKEFDSMTPL--DPWKTTLLLRVKEKLK  263 (273)
Q Consensus       205 ~~gd~~~A~~~~~~~~-------------------~ll~a~~~~d~~~~~~~~~~~~~~~~l--d~~~~~~l~~~~~~~~  263 (273)
                      ..+++.+|.+.+++-.                   ..+..+...|+-..+.++..|..+.|-  |.=.-++|.++-+.|+
T Consensus       166 ~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aie  245 (288)
T KOG1586|consen  166 QLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIE  245 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHh
Confidence            4567888888777632                   445566778888899999999766552  3333489999999887


Q ss_pred             cc
Q 024043          264 AK  265 (273)
Q Consensus       264 ~~  265 (273)
                      +.
T Consensus       246 E~  247 (288)
T KOG1586|consen  246 EQ  247 (288)
T ss_pred             hh
Confidence            43

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.50  E-value=1.6e-12  Score=123.59  Aligned_cols=202  Identities=10%  Similarity=0.024  Sum_probs=149.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHH
Q 024043           35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAAR  113 (273)
Q Consensus        35 ~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~  113 (273)
                      .+...|.++...|++++|+..|.+++++...      ...++..+|.++... ++++|+.+|++++++....      +.
T Consensus       333 a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~  400 (615)
T TIGR00990       333 ALNLRGTFKCLKGKHLEALADLSKSIELDPR------VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSED------PD  400 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HH
Confidence            4455577888899999999999999887432      245677888888777 9999999999998874322      45


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchh
Q 024043          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK  193 (273)
Q Consensus       114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~  193 (273)
                      ++..+|.++...|++++|+.+|++|+++.+..      ...+..+|.++..+|++++|+..|++++...+.+       .
T Consensus       401 ~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~-------~  467 (615)
T TIGR00990       401 IYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF------IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA-------P  467 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------h
Confidence            88899999999999999999999999886432      3567889999999999999999999987654443       2


Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-----------HH-----hhcCHhHHHHHHHhhhccCCCchhHHHHHHH
Q 024043          194 GHLLNAGICQLCKGDVVAITNALERYQDIAA-----------SM-----DEEDIAKFTDVVKEFDSMTPLDPWKTTLLLR  257 (273)
Q Consensus       194 ~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~-----------a~-----~~~d~~~~~~~~~~~~~~~~ld~~~~~~l~~  257 (273)
                      ..+..+|.++...|++.+|...+++...+-.           .+     .....+.+.+++..|.....+||-....+..
T Consensus       468 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~  547 (615)
T TIGR00990       468 DVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVAT  547 (615)
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            3566778899999999999998888652210           00     0011346677777777777777765555555


Q ss_pred             HHHh
Q 024043          258 VKEK  261 (273)
Q Consensus       258 ~~~~  261 (273)
                      +...
T Consensus       548 la~~  551 (615)
T TIGR00990       548 MAQL  551 (615)
T ss_pred             HHHH
Confidence            4443

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.49  E-value=2.6e-12  Score=122.10  Aligned_cols=177  Identities=14%  Similarity=0.075  Sum_probs=137.6

Q ss_pred             CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHH
Q 024043           26 GSKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNE   90 (273)
Q Consensus        26 ~~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~e   90 (273)
                      .+++++|...|.++              |.++...|++++|+.+|.+++++...      -..++..+|.++... ++++
T Consensus       344 ~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~  417 (615)
T TIGR00990       344 KGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE------DPDIYYHRAQLHFIKGEFAQ  417 (615)
T ss_pred             cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHH
Confidence            38999999999876              56788899999999999999877321      145788899999877 9999


Q ss_pred             HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHH
Q 024043           91 AISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHK  170 (273)
Q Consensus        91 A~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~  170 (273)
                      |+.+|++++.+....      ...+.++|.++..+|++++|+..|++++..+...      ..++..+|.++..+|++++
T Consensus       418 A~~~~~kal~l~P~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~  485 (615)
T TIGR00990       418 AGKDYQKSIDLDPDF------IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA------PDVYNYYGELLLDQNKFDE  485 (615)
T ss_pred             HHHHHHHHHHcCccC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHccCHHH
Confidence            999999999886543      3468899999999999999999999999886432      4678899999999999999


Q ss_pred             HHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          171 SIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       171 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      |++.|++++...++......+....+..++.++...|++.+|...+++..
T Consensus       486 A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl  535 (615)
T TIGR00990       486 AIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKAL  535 (615)
T ss_pred             HHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            99999999865444321111222222233344445688888888888754

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=2.1e-11  Score=106.92  Aligned_cols=160  Identities=18%  Similarity=0.223  Sum_probs=133.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 024043           40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI  118 (273)
Q Consensus        40 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~l  118 (273)
                      ||-|...++.++|+.+|.+|+.+.++.      ..++.-+|.=|-++ +...|+++|++|+++.+..-      ++|..+
T Consensus       337 aNYYSlr~eHEKAv~YFkRALkLNp~~------~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~Dy------RAWYGL  404 (559)
T KOG1155|consen  337 ANYYSLRSEHEKAVMYFKRALKLNPKY------LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDY------RAWYGL  404 (559)
T ss_pred             hhHHHHHHhHHHHHHHHHHHHhcCcch------hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhH------HHHhhh
Confidence            567888889999999999999886433      34667789999888 99999999999999987654      499999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHH
Q 024043          119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLN  198 (273)
Q Consensus       119 g~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (273)
                      |+.|..++.+-=|+-+|++|.++-+.+      ...|..+|.||.++++.++|+++|.+++.  .++     .....+.+
T Consensus       405 GQaYeim~Mh~YaLyYfqkA~~~kPnD------sRlw~aLG~CY~kl~~~~eAiKCykrai~--~~d-----te~~~l~~  471 (559)
T KOG1155|consen  405 GQAYEIMKMHFYALYYFQKALELKPND------SRLWVALGECYEKLNRLEEAIKCYKRAIL--LGD-----TEGSALVR  471 (559)
T ss_pred             hHHHHHhcchHHHHHHHHHHHhcCCCc------hHHHHHHHHHHHHhccHHHHHHHHHHHHh--ccc-----cchHHHHH
Confidence            999999999999999999999885432      36789999999999999999999999963  122     12346788


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHH
Q 024043          199 AGICQLCKGDVVAITNALERYQDIAA  224 (273)
Q Consensus       199 ~gl~~l~~gd~~~A~~~~~~~~~ll~  224 (273)
                      ++..|-..+|..+|..++++|.....
T Consensus       472 LakLye~l~d~~eAa~~yek~v~~~~  497 (559)
T KOG1155|consen  472 LAKLYEELKDLNEAAQYYEKYVEVSE  497 (559)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            89999999999999999999985443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.41  E-value=2.6e-11  Score=97.80  Aligned_cols=170  Identities=17%  Similarity=0.136  Sum_probs=145.0

Q ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcC
Q 024043           28 KYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIG  106 (273)
Q Consensus        28 ~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g  106 (273)
                      +...|.....+.|.-|...|++..|..-+++|++.-..      -..++.-++.+|... +++.|-+.|++|+.+-...|
T Consensus        30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs------~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G  103 (250)
T COG3063          30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPS------YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG  103 (250)
T ss_pred             cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc
Confidence            67789999999999999999999999999999988432      234666778888777 99999999999999999999


Q ss_pred             ChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccc
Q 024043          107 RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNN  186 (273)
Q Consensus       107 ~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~  186 (273)
                      +      +++|-|.-+..+|+|++|..+|++|++-    ......+.++.++|.|..+.|+.+.|.++|++++...++.+
T Consensus       104 d------VLNNYG~FLC~qg~~~eA~q~F~~Al~~----P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~  173 (250)
T COG3063         104 D------VLNNYGAFLCAQGRPEEAMQQFERALAD----PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP  173 (250)
T ss_pred             c------hhhhhhHHHHhCCChHHHHHHHHHHHhC----CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC
Confidence            8      9999999999999999999999999864    12234457899999999999999999999999987666554


Q ss_pred             hhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          187 LLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       187 ~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      .       .+..+.-.+...||+..|+-.+++|.
T Consensus       174 ~-------~~l~~a~~~~~~~~y~~Ar~~~~~~~  200 (250)
T COG3063         174 P-------ALLELARLHYKAGDYAPARLYLERYQ  200 (250)
T ss_pred             h-------HHHHHHHHHHhcccchHHHHHHHHHH
Confidence            2       33455566778899999999999987

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.41  E-value=4.6e-11  Score=98.10  Aligned_cols=173  Identities=15%  Similarity=0.134  Sum_probs=139.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc
Q 024043           27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI  105 (273)
Q Consensus        27 ~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~  105 (273)
                      ++.+.....+...|.++...|++++|...+.+++....      .....+..+|.++... ++++|++++++++.+....
T Consensus        25 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~   98 (234)
T TIGR02521        25 TDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDP------DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN   98 (234)
T ss_pred             ccCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            45566677888889999999999999999999987632      2245777889999777 9999999999999875433


Q ss_pred             CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          106 GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       106 g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                            ...+.++|.++...|++++|+.+|++++....    .......+..+|.++...|++++|...|++++...+++
T Consensus        99 ------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  168 (234)
T TIGR02521        99 ------GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL----YPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR  168 (234)
T ss_pred             ------HHHHHHHHHHHHHcccHHHHHHHHHHHHhccc----cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence                  24788999999999999999999999997532    12234567889999999999999999999997654433


Q ss_pred             chhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043          186 NLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDI  222 (273)
Q Consensus       186 ~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~l  222 (273)
                             ...+..++.++...|++++|...++++..+
T Consensus       169 -------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  198 (234)
T TIGR02521       169 -------PESLLELAELYYLRGQYKDARAYLERYQQT  198 (234)
T ss_pred             -------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                   234567788999999999999999987543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.41  E-value=9.1e-11  Score=105.15  Aligned_cols=162  Identities=18%  Similarity=0.159  Sum_probs=115.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 024043           40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI  118 (273)
Q Consensus        40 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~l  118 (273)
                      |.+|...|++++|..+|.++.+..      .....++..++.++... ++++|++.+++++....... ....+..+..+
T Consensus       114 a~~~~~~g~~~~A~~~~~~~l~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~l  186 (389)
T PRK11788        114 GQDYLKAGLLDRAEELFLQLVDEG------DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSL-RVEIAHFYCEL  186 (389)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHcCC------cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcc-hHHHHHHHHHH
Confidence            556677777777777777776541      11234566677777666 88888888888776543222 12345567788


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHH
Q 024043          119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLN  198 (273)
Q Consensus       119 g~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (273)
                      |.++...|++++|+.+|++++++.+..      ..++..+|.++...|++++|++.|+++....+..      ....+..
T Consensus       187 a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~~  254 (389)
T PRK11788        187 AQQALARGDLDAARALLKKALAADPQC------VRASILLGDLALAQGDYAAAIEALERVEEQDPEY------LSEVLPK  254 (389)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhHCcCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh------HHHHHHH
Confidence            888888899999999999998875421      3567889999999999999999999987542221      2234556


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHH
Q 024043          199 AGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       199 ~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      ++.++...|+++.|...+++..
T Consensus       255 l~~~~~~~g~~~~A~~~l~~~~  276 (389)
T PRK11788        255 LMECYQALGDEAEGLEFLRRAL  276 (389)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHH
Confidence            6778888999999988888754

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.39  E-value=1.2e-10  Score=94.61  Aligned_cols=183  Identities=17%  Similarity=0.152  Sum_probs=140.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCChh
Q 024043           30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLS  109 (273)
Q Consensus        30 ~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~eA~~~~~~Al~~~~~~g~~~  109 (273)
                      -.|+..|++++-+.+....|.++.++|++|..+|.+.|.+.-++.++..++.+....+|++|+..|++++.++...++..
T Consensus        68 fhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~  147 (308)
T KOG1585|consen   68 FHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQ  147 (308)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHH
Confidence            34444444555666677789999999999999999999999999999999999998899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--Hhccch
Q 024043          110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ--SLNNNL  187 (273)
Q Consensus       110 ~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~--~~~~~~  187 (273)
                      .+-..+..++.++.....+++|...+.+-..++.......+....+...-.++....+|..|-.+|+..-..  ..++  
T Consensus       148 ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~s--  225 (308)
T KOG1585|consen  148 MAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKS--  225 (308)
T ss_pred             HHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccCh--
Confidence            999999999999999999999999999887777766655554455555556666777999999999885211  1111  


Q ss_pred             hhhchhhHHHHHHHHHHhcCCHHHHHHHHHH
Q 024043          188 LKYGVKGHLLNAGICQLCKGDVVAITNALER  218 (273)
Q Consensus       188 ~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~  218 (273)
                         .....+-++ +--...||.+.+...+.-
T Consensus       226 ---ed~r~lenL-L~ayd~gD~E~~~kvl~s  252 (308)
T KOG1585|consen  226 ---EDSRSLENL-LTAYDEGDIEEIKKVLSS  252 (308)
T ss_pred             ---HHHHHHHHH-HHHhccCCHHHHHHHHcC
Confidence               111122222 223457898888777664

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.39  E-value=1.4e-12  Score=118.63  Aligned_cols=197  Identities=17%  Similarity=0.229  Sum_probs=156.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 024043           39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKE  117 (273)
Q Consensus        39 a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~  117 (273)
                      +||+|..+++++.|+.||++|+.+-..      -+.+|..+|.=+... .++.|..+|++|+.+-.+.=      ++|..
T Consensus       427 ~GNcfSLQkdh~~Aik~f~RAiQldp~------faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY------nAwYG  494 (638)
T KOG1126|consen  427 LGNCFSLQKDHDTAIKCFKRAIQLDPR------FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY------NAWYG  494 (638)
T ss_pred             hcchhhhhhHHHHHHHHHHHhhccCCc------cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh------HHHHh
Confidence            589999999999999999999988432      245777777666555 89999999999998766554      49999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHH
Q 024043          118 IAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLL  197 (273)
Q Consensus       118 lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (273)
                      +|.+|.++++++.|.-+|++|+++....      ...+.-+|.++.++|+.++|+.+|++++...+.+++.+       +
T Consensus       495 lG~vy~Kqek~e~Ae~~fqkA~~INP~n------svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~-------~  561 (638)
T KOG1126|consen  495 LGTVYLKQEKLEFAEFHFQKAVEINPSN------SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCK-------Y  561 (638)
T ss_pred             hhhheeccchhhHHHHHHHhhhcCCccc------hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhH-------H
Confidence            9999999999999999999999996533      35688899999999999999999999987777766533       4


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHH----------HHHHHhhcCHhHHHHHHHhhhccCCCchhHHHHHHHHHHhcc
Q 024043          198 NAGICQLCKGDVVAITNALERYQD----------IAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLK  263 (273)
Q Consensus       198 ~~gl~~l~~gd~~~A~~~~~~~~~----------ll~a~~~~d~~~~~~~~~~~~~~~~ld~~~~~~l~~~~~~~~  263 (273)
                      ..+.++...++++.|...+++...          ++.- -..-...-.-++..|.-+..|||-=++  .+||..++
T Consensus       562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgk-i~k~~~~~~~Al~~f~~A~~ldpkg~~--i~~k~~~~  634 (638)
T KOG1126|consen  562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGK-IYKRLGNTDLALLHFSWALDLDPKGAQ--IQIKAAIE  634 (638)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHH-HHHHHccchHHHHhhHHHhcCCCccch--hhHHHHhh
Confidence            556777788999999999998651          2211 122234455678888888999999888  66666554

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.35  E-value=2.6e-10  Score=111.44  Aligned_cols=190  Identities=14%  Similarity=0.078  Sum_probs=129.6

Q ss_pred             hHHHHHHHHHHhhccccCCCCCHHHHHHHHHH--------------HHHHHHHcCCHHHHHHHHHHHHHHH---------
Q 024043            7 RAEEFEKKAEKKLNGWGLFGSKYEDAADLFDK--------------AANSFKLAKSWDKAGATYVKLANCH---------   63 (273)
Q Consensus         7 ~a~~l~~~Aek~~k~~~~~~~~~~~A~~~~~~--------------a~~~~~~~~~~~~A~~~~~~a~~~~---------   63 (273)
                      .+..++..|...++     .|+|++|+..+.+              .|.+|...|+|++|...+.++....         
T Consensus        21 ~~~~~~~~a~~~~~-----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~   95 (899)
T TIGR02917        21 SPESLIEAAKSYLQ-----KNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPL   95 (899)
T ss_pred             CHHHHHHHHHHHHH-----cCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHH
Confidence            45566666666665     2366666655554              3667777788888888777766431         


Q ss_pred             -----HHcC---------------CHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 024043           64 -----LKLE---------------SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELY  122 (273)
Q Consensus        64 -----~~~~---------------~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~  122 (273)
                           ...|               +....+..+..+|.++... ++++|+.+|++++...+..      ..++..+|.++
T Consensus        96 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~  169 (899)
T TIGR02917        96 LARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRS------LYAKLGLAQLA  169 (899)
T ss_pred             HHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hhhHHHHHHHH
Confidence                 1111               3344556677788888766 8999999999988765432      33677888888


Q ss_pred             HhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHH
Q 024043          123 ESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGIC  202 (273)
Q Consensus       123 ~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~  202 (273)
                      ...|++++|+..++++++....      ....+..+|.++...|++++|+..|++++...++++       ..++.++.+
T Consensus       170 ~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~-------~~~~~~~~~  236 (899)
T TIGR02917       170 LAENRFDEARALIDEVLTADPG------NVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNP-------AVLLALATI  236 (899)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHH
Confidence            8888888888888888776432      235677778888888888888888888875544332       244556667


Q ss_pred             HHhcCCHHHHHHHHHHHH
Q 024043          203 QLCKGDVVAITNALERYQ  220 (273)
Q Consensus       203 ~l~~gd~~~A~~~~~~~~  220 (273)
                      ++..|++.+|...++...
T Consensus       237 ~~~~g~~~~A~~~~~~~~  254 (899)
T TIGR02917       237 LIEAGEFEEAEKHADALL  254 (899)
T ss_pred             HHHcCCHHHHHHHHHHHH
Confidence            777777777777766543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.35  E-value=9.4e-10  Score=98.58  Aligned_cols=179  Identities=18%  Similarity=0.154  Sum_probs=137.2

Q ss_pred             CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHH
Q 024043           26 GSKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNE   90 (273)
Q Consensus        26 ~~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~e   90 (273)
                      .+++++|...|.++              |.++...|++++|+..+.++...-  ..........+..+|.+|... ++++
T Consensus        48 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~La~~~~~~g~~~~  125 (389)
T PRK11788         48 NEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP--DLTREQRLLALQELGQDYLKAGLLDR  125 (389)
T ss_pred             cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence            36777777777765              678889999999999999877521  112333456788999999777 9999


Q ss_pred             HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHH
Q 024043           91 AISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHK  170 (273)
Q Consensus        91 A~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~  170 (273)
                      |+.+|+++++..      .....++..++.++...|++++|++.+++++........ ......+..+|.++...|++++
T Consensus       126 A~~~~~~~l~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~  198 (389)
T PRK11788        126 AEELFLQLVDEG------DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLR-VEIAHFYCELAQQALARGDLDA  198 (389)
T ss_pred             HHHHHHHHHcCC------cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcch-HHHHHHHHHHHHHHHhCCCHHH
Confidence            999999998651      123457889999999999999999999999876543322 1234567889999999999999


Q ss_pred             HHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          171 SIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       171 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      |+.+|++++...+..       ...+..++.++...|++.+|.+.+++..
T Consensus       199 A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~  241 (389)
T PRK11788        199 ARALLKKALAADPQC-------VRASILLGDLALAQGDYAAAIEALERVE  241 (389)
T ss_pred             HHHHHHHHHhHCcCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            999999997644332       2345677888999999999999888754

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.34  E-value=2.8e-10  Score=95.09  Aligned_cols=183  Identities=16%  Similarity=0.085  Sum_probs=142.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc
Q 024043           27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI  105 (273)
Q Consensus        27 ~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~  105 (273)
                      |..+...+.+...|..+...|++++|+..|.++...+..   ......++..+|.++... ++++|+..|++++..+...
T Consensus        27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~  103 (235)
T TIGR03302        27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPF---SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNH  103 (235)
T ss_pred             CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC
Confidence            356677777778899999999999999999998876532   233445678889999887 9999999999999988754


Q ss_pred             CChhHHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHHHhccCCcccHH-----------HHHHHHHHHHHHhc
Q 024043          106 GRLSMAARYYKEIAELYESE--------HNIEQTIVFFEKAADMFQNEEVTTSAN-----------QCKQKVAQYAAELE  166 (273)
Q Consensus       106 g~~~~~a~~l~~lg~~~~~~--------g~~~~A~~~y~~Al~~~~~~~~~~~~~-----------~~~~~~a~~~~~~g  166 (273)
                      ..   ...++..+|.++...        |++++|+..|++++..++.......+-           .....+|.++...|
T Consensus       104 ~~---~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g  180 (235)
T TIGR03302       104 PD---ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRG  180 (235)
T ss_pred             Cc---hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            43   345678888888765        789999999999999887654321110           11246788999999


Q ss_pred             CHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043          167 QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY  219 (273)
Q Consensus       167 ~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~  219 (273)
                      ++.+|+..|++++...++++    .....++.+|.++...|++.+|..+++..
T Consensus       181 ~~~~A~~~~~~al~~~p~~~----~~~~a~~~l~~~~~~lg~~~~A~~~~~~l  229 (235)
T TIGR03302       181 AYVAAINRFETVVENYPDTP----ATEEALARLVEAYLKLGLKDLAQDAAAVL  229 (235)
T ss_pred             ChHHHHHHHHHHHHHCCCCc----chHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999999987666542    23457788999999999999999877764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.34  E-value=2.9e-10  Score=93.29  Aligned_cols=170  Identities=14%  Similarity=0.087  Sum_probs=132.0

Q ss_pred             CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHH
Q 024043           27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA   91 (273)
Q Consensus        27 ~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA   91 (273)
                      +++++|.+.+.++              |.++...|++++|...|.++.......      ...+.++|.++... ++++|
T Consensus        45 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~~~~~~~~~g~~~~A  118 (234)
T TIGR02521        45 GDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN------GDVLNNYGTFLCQQGKYEQA  118 (234)
T ss_pred             CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcccHHHH
Confidence            5666666666653              678888999999999999999875322      24677888888777 99999


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHH
Q 024043           92 ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS  171 (273)
Q Consensus        92 ~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A  171 (273)
                      ++++++++...    ........+.++|.++...|++++|..++.+++......      ...+..+|.++...|++++|
T Consensus       119 ~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A  188 (234)
T TIGR02521       119 MQQFEQAIEDP----LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR------PESLLELAELYYLRGQYKDA  188 (234)
T ss_pred             HHHHHHHHhcc----ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC------hHHHHHHHHHHHHcCCHHHH
Confidence            99999998642    223345678889999999999999999999999875432      35678999999999999999


Q ss_pred             HHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043          172 IEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY  219 (273)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~  219 (273)
                      +.+++++......       ....+...+.++...|+...|...++..
T Consensus       189 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~  229 (234)
T TIGR02521       189 RAYLERYQQTYNQ-------TAESLWLGIRIARALGDVAAAQRYGAQL  229 (234)
T ss_pred             HHHHHHHHHhCCC-------CHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            9999998754221       1233445567788899999988877664

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.32  E-value=3.2e-10  Score=91.63  Aligned_cols=162  Identities=16%  Similarity=0.132  Sum_probs=130.9

Q ss_pred             CHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q 024043           68 SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE  146 (273)
Q Consensus        68 ~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~  146 (273)
                      +...++.+...+|.-|... ++..|...+++|+++-+..-      .++.-++.+|...|+.+.|-+.|++|+.+....|
T Consensus        30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~------~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G  103 (250)
T COG3063          30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY------LAHLVRAHYYQKLGENDLADESYRKALSLAPNNG  103 (250)
T ss_pred             cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH------HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc
Confidence            5678889999999999877 99999999999999866543      4888999999999999999999999999987655


Q ss_pred             CcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH------
Q 024043          147 VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ------  220 (273)
Q Consensus       147 ~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~------  220 (273)
                            +++++.|..++.+|+|++|...|++++.    +| .-+.....+.|+|+|.+.+|+..+|+..|++..      
T Consensus       104 ------dVLNNYG~FLC~qg~~~eA~q~F~~Al~----~P-~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~  172 (250)
T COG3063         104 ------DVLNNYGAFLCAQGRPEEAMQQFERALA----DP-AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF  172 (250)
T ss_pred             ------chhhhhhHHHHhCCChHHHHHHHHHHHh----CC-CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC
Confidence                  6899999999999999999999999963    22 122345678899999999999999999999865      


Q ss_pred             --HHHH----HHhhcCHhHHHHHHHhhhccCC
Q 024043          221 --DIAA----SMDEEDIAKFTDVVKEFDSMTP  246 (273)
Q Consensus       221 --~ll~----a~~~~d~~~~~~~~~~~~~~~~  246 (273)
                        .+++    .++.|+.-.-+--+..|..-..
T Consensus       173 ~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~  204 (250)
T COG3063         173 PPALLELARLHYKAGDYAPARLYLERYQQRGG  204 (250)
T ss_pred             ChHHHHHHHHHHhcccchHHHHHHHHHHhccc
Confidence              1111    2455665555555666665555

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.29  E-value=3.6e-10  Score=108.00  Aligned_cols=169  Identities=16%  Similarity=0.150  Sum_probs=120.9

Q ss_pred             CCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHH
Q 024043           27 SKYEDAADLFDKA---------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNE   90 (273)
Q Consensus        27 ~~~~~A~~~~~~a---------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~e   90 (273)
                      +++++|...+.++               +.++...|++++|+..|.+++....      ....++..+|.++... ++++
T Consensus       191 g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p------~~~~~~~~Lg~~l~~~G~~~e  264 (656)
T PRK15174        191 SRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL------DGAALRRSLGLAYYQSGRSRE  264 (656)
T ss_pred             CCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCchh
Confidence            5666666655442               3445556777777777777665431      1245566778887666 6664


Q ss_pred             ----HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc
Q 024043           91 ----AISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE  166 (273)
Q Consensus        91 ----A~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g  166 (273)
                          |+.+|++++.+...      .+.++..+|.++...|++++|+.++++++++....      ..++..+|.++...|
T Consensus       265 A~~~A~~~~~~Al~l~P~------~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~------~~a~~~La~~l~~~G  332 (656)
T PRK15174        265 AKLQAAEHWRHALQFNSD------NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDL------PYVRAMYARALRQVG  332 (656)
T ss_pred             hHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCC
Confidence                78888888887543      24688889999999999999999999999875432      356778899999999


Q ss_pred             CHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          167 QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       167 ~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      ++++|+..|++++...+...       ..+..++.++...|++++|...++++.
T Consensus       333 ~~~eA~~~l~~al~~~P~~~-------~~~~~~a~al~~~G~~deA~~~l~~al  379 (656)
T PRK15174        333 QYTAASDEFVQLAREKGVTS-------KWNRYAAAALLQAGKTSEAESVFEHYI  379 (656)
T ss_pred             CHHHHHHHHHHHHHhCccch-------HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            99999999998876544321       233445777888999999999888764

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.29  E-value=4.6e-10  Score=107.29  Aligned_cols=115  Identities=13%  Similarity=0.029  Sum_probs=85.9

Q ss_pred             CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHHHhccCCcccHHHHHHHHHHHH
Q 024043           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQ----TIVFFEKAADMFQNEEVTTSANQCKQKVAQYA  162 (273)
Q Consensus        87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~----A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~  162 (273)
                      ++++|+..|++++.+...      -+.++.++|.++...|++++    |+.+|++|+++.+.      ...++..+|.++
T Consensus       227 ~~~eA~~~~~~al~~~p~------~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~------~~~a~~~lg~~l  294 (656)
T PRK15174        227 KYQEAIQTGESALARGLD------GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD------NVRIVTLYADAL  294 (656)
T ss_pred             CHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC------CHHHHHHHHHHH
Confidence            666666666666654321      24567788888888888885    78888888887542      246788899999


Q ss_pred             HHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          163 AELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       163 ~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      ..+|++++|+..+++++...+.++       ..+..++.++...|++++|...+++..
T Consensus       295 ~~~g~~~eA~~~l~~al~l~P~~~-------~a~~~La~~l~~~G~~~eA~~~l~~al  345 (656)
T PRK15174        295 IRTGQNEKAIPLLQQSLATHPDLP-------YVRAMYARALRQVGQYTAASDEFVQLA  345 (656)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            999999999999999886555432       245667888899999999988887654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.29  E-value=3.3e-10  Score=111.64  Aligned_cols=196  Identities=14%  Similarity=0.078  Sum_probs=137.4

Q ss_pred             CCHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-cCHHHHH
Q 024043           27 SKYEDAADLFDKA-------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK-TSSNEAI   92 (273)
Q Consensus        27 ~~~~~A~~~~~~a-------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~-~~~~eA~   92 (273)
                      +++++|...|.++             |.++...|++++|..+|.+++.....  .    ...+..++..... .++++|+
T Consensus       523 Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~--~----~~l~~~La~~l~~~Gr~~eAl  596 (987)
T PRK09782        523 EDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG--D----NALYWWLHAQRYIPGQPELAL  596 (987)
T ss_pred             CCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc--c----HHHHHHHHHHHHhCCCHHHHH
Confidence            6677777766643             33456677777777777777654211  1    1222233333333 3899999


Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHH
Q 024043           93 SCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSI  172 (273)
Q Consensus        93 ~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~  172 (273)
                      .+|++++.+..     .  +..+.++|.++...|++++|+.+|++|+++.+..      ..++.++|.++...|++++|+
T Consensus       597 ~~~~~AL~l~P-----~--~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~------~~a~~nLG~aL~~~G~~eeAi  663 (987)
T PRK09782        597 NDLTRSLNIAP-----S--ANAYVARATIYRQRHNVPAAVSDLRAALELEPNN------SNYQAALGYALWDSGDIAQSR  663 (987)
T ss_pred             HHHHHHHHhCC-----C--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHH
Confidence            99999987754     1  4578899999999999999999999999986432      367899999999999999999


Q ss_pred             HHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH-------HHHHHHhhcC----HhHHHHHHHhh
Q 024043          173 EIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ-------DIAASMDEED----IAKFTDVVKEF  241 (273)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~-------~ll~a~~~~d----~~~~~~~~~~~  241 (273)
                      .+|++++...++++       ..+.++|.++...|+++.|..++++..       .+..  ..|.    ...|+.+...|
T Consensus       664 ~~l~~AL~l~P~~~-------~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~--~~g~~~~~~~~~~~a~~~~  734 (987)
T PRK09782        664 EMLERAHKGLPDDP-------ALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITP--LTPEQNQQRFNFRRLHEEV  734 (987)
T ss_pred             HHHHHHHHhCCCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhh--hhhHHHHHHHHHHHHHHHH
Confidence            99999987666542       467888999999999999999999865       1111  1111    12366666666


Q ss_pred             hccCCCchh
Q 024043          242 DSMTPLDPW  250 (273)
Q Consensus       242 ~~~~~ld~~  250 (273)
                      .....+++-
T Consensus       735 ~r~~~~~~~  743 (987)
T PRK09782        735 GRRWTFSFD  743 (987)
T ss_pred             HHHhhcCcc
Confidence            666655444

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.25  E-value=4.6e-10  Score=98.63  Aligned_cols=169  Identities=20%  Similarity=0.225  Sum_probs=130.9

Q ss_pred             CCCCHHHHHHHHHHHH--------------HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHH
Q 024043           25 FGSKYEDAADLFDKAA--------------NSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSN   89 (273)
Q Consensus        25 ~~~~~~~A~~~~~~a~--------------~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~   89 (273)
                      -.||+++|++.|.+|.              ..+..+|+.++|++||.+...+..      ..+.++..++++|..+ ++.
T Consensus       502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~------nn~evl~qianiye~led~a  575 (840)
T KOG2003|consen  502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILL------NNAEVLVQIANIYELLEDPA  575 (840)
T ss_pred             ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHhhCHH
Confidence            3599999999999873              346778999999999999887763      3478999999999888 999


Q ss_pred             HHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHH
Q 024043           90 EAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYH  169 (273)
Q Consensus        90 eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~  169 (273)
                      +|+++|.++..+....      ..++.++|.+|...|+-.+|.+|+-..-..|...      .++...+|..|+...=.+
T Consensus       576 qaie~~~q~~slip~d------p~ilskl~dlydqegdksqafq~~ydsyryfp~n------ie~iewl~ayyidtqf~e  643 (840)
T KOG2003|consen  576 QAIELLMQANSLIPND------PAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCN------IETIEWLAAYYIDTQFSE  643 (840)
T ss_pred             HHHHHHHHhcccCCCC------HHHHHHHHHHhhcccchhhhhhhhhhcccccCcc------hHHHHHHHHHHHhhHHHH
Confidence            9999999998776533      3489999999999999999999997766666432      356677888888888889


Q ss_pred             HHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHH
Q 024043          170 KSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER  218 (273)
Q Consensus       170 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~  218 (273)
                      +|+.+|+++....+.       ...+.+.+.-|....|++.+|-+.+..
T Consensus       644 kai~y~ekaaliqp~-------~~kwqlmiasc~rrsgnyqka~d~yk~  685 (840)
T KOG2003|consen  644 KAINYFEKAALIQPN-------QSKWQLMIASCFRRSGNYQKAFDLYKD  685 (840)
T ss_pred             HHHHHHHHHHhcCcc-------HHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            999999998643332       222334456677888888766555443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.23  E-value=9.8e-10  Score=111.43  Aligned_cols=181  Identities=9%  Similarity=0.020  Sum_probs=134.2

Q ss_pred             CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHH---H-----HHHHHHHHHHHHh
Q 024043           27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKH---E-----AAQAYVDAAHCYK   84 (273)
Q Consensus        27 ~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~---~-----aa~~~~~~~~~~~   84 (273)
                      +++++|...|.++              |.++...|++++|+.+|.++++.........   .     ........|.++.
T Consensus       283 g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~  362 (1157)
T PRK11447        283 GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAAL  362 (1157)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHH
Confidence            7888888888875              5778889999999999999887764333211   0     1122334566665


Q ss_pred             cc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCc-ccH-----------
Q 024043           85 KT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT-TSA-----------  151 (273)
Q Consensus        85 ~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~-~~~-----------  151 (273)
                      .. ++++|+.+|++++.+....      +.++..+|.++...|++++|+++|++|+.+....... ...           
T Consensus       363 ~~g~~~eA~~~~~~Al~~~P~~------~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~  436 (1157)
T PRK11447        363 KANNLAQAERLYQQARQVDNTD------SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEK  436 (1157)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHH
Confidence            55 9999999999999875422      3578899999999999999999999999876543210 000           


Q ss_pred             ------------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcC
Q 024043          152 ------------------------NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKG  207 (273)
Q Consensus       152 ------------------------~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~g  207 (273)
                                              ...+...|.++...|++++|++.|++++...++++       ..++.++.++...|
T Consensus       437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~-------~~~~~LA~~~~~~G  509 (1157)
T PRK11447        437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSV-------WLTYRLAQDLRQAG  509 (1157)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcC
Confidence                                    12234567778889999999999999987666542       35577888999999


Q ss_pred             CHHHHHHHHHHHH
Q 024043          208 DVVAITNALERYQ  220 (273)
Q Consensus       208 d~~~A~~~~~~~~  220 (273)
                      ++.+|...+++..
T Consensus       510 ~~~~A~~~l~~al  522 (1157)
T PRK11447        510 QRSQADALMRRLA  522 (1157)
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999998864

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.23  E-value=5.9e-09  Score=89.39  Aligned_cols=208  Identities=17%  Similarity=0.123  Sum_probs=156.8

Q ss_pred             HhhHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--CHH--HHHHHHHHHH
Q 024043            5 IARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLE--SKH--EAAQAYVDAA   80 (273)
Q Consensus         5 ~~~a~~l~~~Aek~~k~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~--~aa~~~~~~~   80 (273)
                      ++.+.+.+++|=|..+.    .+|.---.+.+.-.|.+|....++++|+-+..+|+++....+  ++.  -.+.++..++
T Consensus       138 fq~~Lesfe~A~~~A~~----~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhma  213 (518)
T KOG1941|consen  138 FQKALESFEKALRYAHN----NDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMA  213 (518)
T ss_pred             HHHHHHHHHHHHHHhhc----cCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHH
Confidence            34455555555554441    112222234455568899999999999999999999998665  332  2334455677


Q ss_pred             HHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHH
Q 024043           81 HCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVA  159 (273)
Q Consensus        81 ~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a  159 (273)
                      ..++.. +...|.++.++|..+....||....++++.-+|.+|...|+.+.|...|++|..+....|++.....++..+|
T Consensus       214 ValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~A  293 (518)
T KOG1941|consen  214 VALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAA  293 (518)
T ss_pred             HHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            777766 9999999999999999999999999999999999999999999999999999999999999988899999999


Q ss_pred             HHHHHhcCHHH-----HHHHHHHHH--HHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043          160 QYAAELEQYHK-----SIEIYEEIA--RQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY  219 (273)
Q Consensus       160 ~~~~~~g~y~~-----A~~~~~~~~--~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~  219 (273)
                      .+...+.-..+     |++.-++.+  ...+|.   ++.+.....++..+|...|+-++-...+.++
T Consensus       294 kc~~~~r~~~k~~~Crale~n~r~levA~~IG~---K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra  357 (518)
T KOG1941|consen  294 KCLETLRLQNKICNCRALEFNTRLLEVASSIGA---KLSVLKLHCRLASIYRSKGLQDELRAHVVRA  357 (518)
T ss_pred             HHHHHHHHhhcccccchhHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence            98877654444     888777775  335554   3445555566778888888765555554443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.22  E-value=7.1e-10  Score=109.35  Aligned_cols=194  Identities=11%  Similarity=0.006  Sum_probs=134.8

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 024043           42 SFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAE  120 (273)
Q Consensus        42 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~  120 (273)
                      .+...|++++|+.+|.++....  ..+     ..+..+|.++... ++++|+.+|++++......      ...+..++.
T Consensus       518 al~~~Gr~eeAi~~~rka~~~~--p~~-----~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~------~~l~~~La~  584 (987)
T PRK09782        518 QAYQVEDYATALAAWQKISLHD--MSN-----EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGD------NALYWWLHA  584 (987)
T ss_pred             HHHHCCCHHHHHHHHHHHhccC--CCc-----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc------HHHHHHHHH
Confidence            3345666666666666643221  011     1133455555544 7777777777777653111      223334555


Q ss_pred             HHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHH
Q 024043          121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAG  200 (273)
Q Consensus       121 ~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  200 (273)
                      .....|++++|+.+|++|+++..      . ...+.++|.++.++|++++|+..|++++...+++.       ..+.++|
T Consensus       585 ~l~~~Gr~~eAl~~~~~AL~l~P------~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~-------~a~~nLG  650 (987)
T PRK09782        585 QRYIPGQPELALNDLTRSLNIAP------S-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNS-------NYQAALG  650 (987)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCC------C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-------HHHHHHH
Confidence            55566999999999999998864      2 46789999999999999999999999987666553       4677889


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHH---------HHHHhhcCHhHHHHHHHhhhccCCCchhHHHHHHHHHHhc
Q 024043          201 ICQLCKGDVVAITNALERYQDI---------AASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKL  262 (273)
Q Consensus       201 l~~l~~gd~~~A~~~~~~~~~l---------l~a~~~~d~~~~~~~~~~~~~~~~ld~~~~~~l~~~~~~~  262 (273)
                      .++...|++++|...+++...+         .-+........+.+++..|..+..++|.+.++...+.+..
T Consensus       651 ~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~  721 (987)
T PRK09782        651 YALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQN  721 (987)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHH
Confidence            9999999999999999986511         1122223345577888899999999999988877666544

>PRK12370 invasion protein regulator; Provisional

Probab=99.22  E-value=8.1e-10  Score=103.77  Aligned_cols=149  Identities=11%  Similarity=-0.087  Sum_probs=107.7

Q ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcC
Q 024043           48 SWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH  126 (273)
Q Consensus        48 ~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g  126 (273)
                      ++++|..++.+++++...      -+.++..+|.++... ++++|+.+|++|+.+....      +.++..+|.++...|
T Consensus       319 ~~~~A~~~~~~Al~ldP~------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~------~~a~~~lg~~l~~~G  386 (553)
T PRK12370        319 AMIKAKEHAIKATELDHN------NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPIS------ADIKYYYGWNLFMAG  386 (553)
T ss_pred             HHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCC
Confidence            477888888888777322      234566778887665 8999999999998875433      347788899999999


Q ss_pred             CHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhc
Q 024043          127 NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCK  206 (273)
Q Consensus       127 ~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~  206 (273)
                      ++++|+.++++|+++.....      .+....+.++...|++++|+..+++++.....+      ....+..+|.++...
T Consensus       387 ~~~eAi~~~~~Al~l~P~~~------~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~------~~~~~~~la~~l~~~  454 (553)
T PRK12370        387 QLEEALQTINECLKLDPTRA------AAGITKLWITYYHTGIDDAIRLGDELRSQHLQD------NPILLSMQVMFLSLK  454 (553)
T ss_pred             CHHHHHHHHHHHHhcCCCCh------hhHHHHHHHHHhccCHHHHHHHHHHHHHhcccc------CHHHHHHHHHHHHhC
Confidence            99999999999998865421      123334555667889999999998876442111      122456778888889


Q ss_pred             CCHHHHHHHHHHHH
Q 024043          207 GDVVAITNALERYQ  220 (273)
Q Consensus       207 gd~~~A~~~~~~~~  220 (273)
                      |++++|...+.+..
T Consensus       455 G~~~eA~~~~~~~~  468 (553)
T PRK12370        455 GKHELARKLTKEIS  468 (553)
T ss_pred             CCHHHHHHHHHHhh
Confidence            99999999888754

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.19  E-value=1.6e-09  Score=105.83  Aligned_cols=133  Identities=14%  Similarity=0.197  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC------
Q 024043           74 QAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE------  146 (273)
Q Consensus        74 ~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~------  146 (273)
                      ..+..+|.++... ++++|+.+|++++......      ...+..+|.++...|++++|+.+|++++.+.+...      
T Consensus       602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  675 (899)
T TIGR02917       602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDS------ALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGL  675 (899)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            3455667777666 8888888888887654322      24677788888888888888888888877644310      


Q ss_pred             --------C--------------cccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHH
Q 024043          147 --------V--------------TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQL  204 (273)
Q Consensus       147 --------~--------------~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l  204 (273)
                              +              .......+..+|.++...|++++|++.|++++...+.+        ..+..++.++.
T Consensus       676 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~~~l~~~~~  747 (899)
T TIGR02917       676 AQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS--------QNAIKLHRALL  747 (899)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--------hHHHHHHHHHH
Confidence                    0              01122345556677777777777777777765433222        23344556666


Q ss_pred             hcCCHHHHHHHHHHHH
Q 024043          205 CKGDVVAITNALERYQ  220 (273)
Q Consensus       205 ~~gd~~~A~~~~~~~~  220 (273)
                      ..|++.+|...++++.
T Consensus       748 ~~g~~~~A~~~~~~~l  763 (899)
T TIGR02917       748 ASGNTAEAVKTLEAWL  763 (899)
T ss_pred             HCCCHHHHHHHHHHHH
Confidence            6666666666666543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.19  E-value=2.9e-10  Score=78.23  Aligned_cols=74  Identities=24%  Similarity=0.437  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 024043           70 HEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM-AARYYKEIAELYESEHNIEQTIVFFEKAADMFQ  143 (273)
Q Consensus        70 ~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~-~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~  143 (273)
                      +..+.++.++|.+|... ++++|+++|++|+.+....|+... .+.++.++|.++..+|++++|+++|++|+++++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~   77 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE   77 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence            34566777777777766 777777777777777666776543 577777777777777777777777777777765

...

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.16  E-value=3.2e-09  Score=92.01  Aligned_cols=131  Identities=10%  Similarity=-0.057  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCCh
Q 024043           30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL  108 (273)
Q Consensus        30 ~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~  108 (273)
                      +.-...|...|.+|...|++++|...|.+++.+...      -..++..+|.++... ++++|+..|++++++....   
T Consensus        61 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~---  131 (296)
T PRK11189         61 EERAQLHYERGVLYDSLGLRALARNDFSQALALRPD------MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---  131 (296)
T ss_pred             HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---
Confidence            344456667799999999999999999999987432      246889999999887 9999999999999886544   


Q ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043          109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA  179 (273)
Q Consensus       109 ~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~  179 (273)
                         +.++.++|.++...|++++|++.+++++.+.....  .  ...+.   .+....+++++|+..|.+.+
T Consensus       132 ---~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~--~--~~~~~---~l~~~~~~~~~A~~~l~~~~  192 (296)
T PRK11189        132 ---NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP--Y--RALWL---YLAESKLDPKQAKENLKQRY  192 (296)
T ss_pred             ---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--H--HHHHH---HHHHccCCHHHHHHHHHHHH
Confidence               34789999999999999999999999998765432  1  11111   22345678999999887754

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.12  E-value=5.6e-09  Score=106.00  Aligned_cols=134  Identities=12%  Similarity=0.089  Sum_probs=107.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhH--------
Q 024043           40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM--------  110 (273)
Q Consensus        40 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~--------  110 (273)
                      |.++...|++++|+..|.+++......      ..++..+|.+|... ++++|+.+|++++.+.........        
T Consensus       276 G~~~~~~g~~~~A~~~l~~aL~~~P~~------~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~  349 (1157)
T PRK11447        276 GLAAVDSGQGGKAIPELQQAVRANPKD------SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN  349 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence            677888999999999999999875322      46788899999877 999999999999988765543211        


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                      ....+...|.++...|++++|+.+|++|+.+....      ..++..+|.++...|++++|++.|++++...+++
T Consensus       350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~------~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~  418 (1157)
T PRK11447        350 RYWLLIQQGDAALKANNLAQAERLYQQARQVDNTD------SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGN  418 (1157)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            12234466888889999999999999999985422      3568899999999999999999999998655443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.10  E-value=9.5e-09  Score=85.80  Aligned_cols=164  Identities=15%  Similarity=0.162  Sum_probs=120.4

Q ss_pred             hhHHHHHHHHHHhhccccCCCCCHHHHHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 024043            6 ARAEEFEKKAEKKLNGWGLFGSKYEDAADLF-----------------DKAANSFKLAKSWDKAGATYVKLANCHLKLES   68 (273)
Q Consensus         6 ~~a~~l~~~Aek~~k~~~~~~~~~~~A~~~~-----------------~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~   68 (273)
                      ..+..++..|...++     .++|++|...|                 ...|.+|...|++++|+..|.++++.+.....
T Consensus        31 ~~~~~~~~~g~~~~~-----~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~  105 (235)
T TIGR03302        31 WPAEELYEEAKEALD-----SGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD  105 (235)
T ss_pred             CCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence            356666666666555     12344444443                 34477888999999999999999988754332


Q ss_pred             HHHHHHHHHHHHHHHhcc---------CHHHHHHHHHHHHHHHHhcCChhHH-----------HHHHHHHHHHHHhcCCH
Q 024043           69 KHEAAQAYVDAAHCYKKT---------SSNEAISCLEQAVNMFCDIGRLSMA-----------ARYYKEIAELYESEHNI  128 (273)
Q Consensus        69 ~~~aa~~~~~~~~~~~~~---------~~~eA~~~~~~Al~~~~~~g~~~~~-----------a~~l~~lg~~~~~~g~~  128 (273)
                         ...++..+|.++...         ++++|++.|++++..++.......+           +.....+|.+|...|++
T Consensus       106 ---~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~  182 (235)
T TIGR03302       106 ---ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAY  182 (235)
T ss_pred             ---hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh
Confidence               234566777777542         6889999999999887765443211           12234788899999999


Q ss_pred             HHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 024043          129 EQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR  180 (273)
Q Consensus       129 ~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~  180 (273)
                      .+|+..|+++++.+...   .....++..+|.++..+|++++|+.+++....
T Consensus       183 ~~A~~~~~~al~~~p~~---~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~  231 (235)
T TIGR03302       183 VAAINRFETVVENYPDT---PATEEALARLVEAYLKLGLKDLAQDAAAVLGA  231 (235)
T ss_pred             HHHHHHHHHHHHHCCCC---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            99999999999998764   23457899999999999999999999888753

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=2.4e-09  Score=96.23  Aligned_cols=173  Identities=13%  Similarity=0.139  Sum_probs=132.1

Q ss_pred             CCchHhhHHHHHHHHHHhhcc----ccC----CC--CCHHHHHHHHHHHHH--------------HHHHcCCHHHHHHHH
Q 024043            1 MGDQIARAEEFEKKAEKKLNG----WGL----FG--SKYEDAADLFDKAAN--------------SFKLAKSWDKAGATY   56 (273)
Q Consensus         1 ~~~~~~~a~~l~~~Aek~~k~----~~~----~~--~~~~~A~~~~~~a~~--------------~~~~~~~~~~A~~~~   56 (273)
                      |.+..++|+.++-||=-+=++    |--    |.  +..|+|..+|..|+.              -|...+++.-|-.+|
T Consensus       324 ~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff  403 (611)
T KOG1173|consen  324 MIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFF  403 (611)
T ss_pred             HhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHH
Confidence            344567788888777654442    311    22  677888888887743              466677888888888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhH-HHHHHHHHHHHHHhcCCHHHHHHH
Q 024043           57 VKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM-AARYYKEIAELYESEHNIEQTIVF  134 (273)
Q Consensus        57 ~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~-~a~~l~~lg~~~~~~g~~~~A~~~  134 (273)
                      .+|..+...-.      -++.++|-++... .+.+|+.+|+.++...+..+.... =.-.+.++|.++.+++.+++|+.+
T Consensus       404 ~~A~ai~P~Dp------lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~  477 (611)
T KOG1173|consen  404 KQALAIAPSDP------LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY  477 (611)
T ss_pred             HHHHhcCCCcc------hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence            88887764322      3567788877655 999999999999977776655332 344689999999999999999999


Q ss_pred             HHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          135 FEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       135 y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                      |++|+.+-...      ..++..+|-+|..+|+++.|++.|.+++...+.+
T Consensus       478 ~q~aL~l~~k~------~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n  522 (611)
T KOG1173|consen  478 YQKALLLSPKD------ASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN  522 (611)
T ss_pred             HHHHHHcCCCc------hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence            99999986543      4678899999999999999999999998666655

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=3.8e-08  Score=88.17  Aligned_cols=219  Identities=12%  Similarity=0.196  Sum_probs=156.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhH
Q 024043           32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM  110 (273)
Q Consensus        32 A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~  110 (273)
                      ...-..++|+......++..|+.+|.+++++...++.....+.+|..++....-. ..+.|++--++...      +...
T Consensus       223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~ra------d~kl  296 (539)
T KOG0548|consen  223 KAHKEKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRA------DYKL  296 (539)
T ss_pred             hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHH------HHHH
Confidence            4456667899999999999999999999999866665555555555555443332 33334443333322      3334


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC--------------------cccHHHHHHHHHHHHHHhcCHHH
Q 024043          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV--------------------TTSANQCKQKVAQYAAELEQYHK  170 (273)
Q Consensus       111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~--------------------~~~~~~~~~~~a~~~~~~g~y~~  170 (273)
                      .++++..+|..|..+++++.++.+|++++.-++....                    ....+.-...-|..++..|+|..
T Consensus       297 Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~  376 (539)
T KOG0548|consen  297 IAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPE  376 (539)
T ss_pred             HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHH
Confidence            7888889999999999999999999999988775110                    00112223344777888999999


Q ss_pred             HHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH----HHHH-----HHhhcCHhHHHHHHHhh
Q 024043          171 SIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ----DIAA-----SMDEEDIAKFTDVVKEF  241 (273)
Q Consensus       171 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~----~ll~-----a~~~~d~~~~~~~~~~~  241 (273)
                      |+..|.+++.+.+.+.       ..|-|.++||+..|.+..|....+...    ..+.     +....-...+..++..|
T Consensus       377 Av~~YteAIkr~P~Da-------~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay  449 (539)
T KOG0548|consen  377 AVKHYTEAIKRDPEDA-------RLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAY  449 (539)
T ss_pred             HHHHHHHHHhcCCchh-------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998777664       256678899999999888877655543    1222     22334456788888889


Q ss_pred             hccCCCchhHHHHHHHHHHhcc
Q 024043          242 DSMTPLDPWKTTLLLRVKEKLK  263 (273)
Q Consensus       242 ~~~~~ld~~~~~~l~~~~~~~~  263 (273)
                      .....+||-...++..+++-++
T Consensus       450 ~eale~dp~~~e~~~~~~rc~~  471 (539)
T KOG0548|consen  450 QEALELDPSNAEAIDGYRRCVE  471 (539)
T ss_pred             HHHHhcCchhHHHHHHHHHHHH
Confidence            9999999999999999888665

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.09  E-value=1.9e-09  Score=98.42  Aligned_cols=175  Identities=15%  Similarity=0.119  Sum_probs=134.1

Q ss_pred             CCHHHHHHHHHHHH-------HHHHHcCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHH
Q 024043           27 SKYEDAADLFDKAA-------NSFKLAKSWDKAGATYVKLANCHL-KLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQ   97 (273)
Q Consensus        27 ~~~~~A~~~~~~a~-------~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~   97 (273)
                      .|++.|+.+|++|.       -.|..+|.-.-+.+-|++|..+|+ .++-...--.++.-+|.+|.+. +++.|.-+|++
T Consensus       435 kdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqk  514 (638)
T KOG1126|consen  435 KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQK  514 (638)
T ss_pred             hHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHh
Confidence            79999999999985       346666654444444444444443 1222233346788999999888 99999999999


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 024043           98 AVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEE  177 (273)
Q Consensus        98 Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~  177 (273)
                      |+++...+-      ..+..+|.++..+|+.++|+++|++|+.+-..+      .-+....|.++..+++|++|+..+++
T Consensus       515 A~~INP~ns------vi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn------~l~~~~~~~il~~~~~~~eal~~LEe  582 (638)
T KOG1126|consen  515 AVEINPSNS------VILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN------PLCKYHRASILFSLGRYVEALQELEE  582 (638)
T ss_pred             hhcCCccch------hHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC------chhHHHHHHHHHhhcchHHHHHHHHH
Confidence            999987664      378889999999999999999999999885543      25678889999999999999999999


Q ss_pred             HHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          178 IARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      .-...+.+       ...++-+|.+|-..|....|...|.-..
T Consensus       583 Lk~~vP~e-------s~v~~llgki~k~~~~~~~Al~~f~~A~  618 (638)
T KOG1126|consen  583 LKELVPQE-------SSVFALLGKIYKRLGNTDLALLHFSWAL  618 (638)
T ss_pred             HHHhCcch-------HHHHHHHHHHHHHHccchHHHHhhHHHh
Confidence            85544443       2356778999999999888887776653

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=6.7e-09  Score=91.50  Aligned_cols=163  Identities=17%  Similarity=0.256  Sum_probs=98.0

Q ss_pred             HhhHHHHHHHHHHhhcc-ccCC---C------CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHH
Q 024043            5 IARAEEFEKKAEKKLNG-WGLF---G------SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLA   60 (273)
Q Consensus         5 ~~~a~~l~~~Aek~~k~-~~~~---~------~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~   60 (273)
                      .++|..+++.|=|+=++ .+.|   |      .+...|++.|++|              |..|...+.+.-|+-+|++|.
T Consensus       346 HEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~  425 (559)
T KOG1155|consen  346 HEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL  425 (559)
T ss_pred             HHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH
Confidence            46666666666665442 1222   2      3555666666655              455666666666666666666


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043           61 NCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAA  139 (273)
Q Consensus        61 ~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al  139 (273)
                      .+-  -.|    .+.+.-+|.||.+. ++++|+.||.+|+..-...      +.++..+|.+|++++++.+|..+|++-+
T Consensus       426 ~~k--PnD----sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte------~~~l~~LakLye~l~d~~eAa~~yek~v  493 (559)
T KOG1155|consen  426 ELK--PND----SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE------GSALVRLAKLYEELKDLNEAAQYYEKYV  493 (559)
T ss_pred             hcC--CCc----hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc------hHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            552  112    13556677777666 7777777777776654333      3377777777777777777777777777


Q ss_pred             HHHhccCCc-ccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043          140 DMFQNEEVT-TSANQCKQKVAQYAAELEQYHKSIEIYEEIA  179 (273)
Q Consensus       140 ~~~~~~~~~-~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~  179 (273)
                      +.....|.. .....+..-++.-+.+.++|++|..+..++.
T Consensus       494 ~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~  534 (559)
T KOG1155|consen  494 EVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL  534 (559)
T ss_pred             HHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence            766444432 1122334446677777777777777666553

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=7e-09  Score=93.31  Aligned_cols=175  Identities=17%  Similarity=0.172  Sum_probs=124.2

Q ss_pred             CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHH
Q 024043           27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA   91 (273)
Q Consensus        27 ~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA   91 (273)
                      +++.+|..+|.++              |..|...+..++|+.+|..|..++....-|      +.-+|.=|-.. .+.-|
T Consensus       326 ~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP------~LYlgmey~~t~n~kLA  399 (611)
T KOG1173|consen  326 GKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP------SLYLGMEYMRTNNLKLA  399 (611)
T ss_pred             cCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch------HHHHHHHHHHhccHHHH
Confidence            4555555555554              345555566666666666666665433322      11233333333 56667


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcc-cHHHHHHHHHHHHHHhcCHHH
Q 024043           92 ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT-SANQCKQKVAQYAAELEQYHK  170 (273)
Q Consensus        92 ~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~-~~~~~~~~~a~~~~~~g~y~~  170 (273)
                      -.+|.+|+.+.+..-      -++..+|.+....+.|.+|..+|+.+++..+...... .-...+.++|-++.++++|++
T Consensus       400 e~Ff~~A~ai~P~Dp------lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e  473 (611)
T KOG1173|consen  400 EKFFKQALAIAPSDP------LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE  473 (611)
T ss_pred             HHHHHHHHhcCCCcc------hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence            777777777665432      3788889888878999999999999998887765532 123568999999999999999


Q ss_pred             HHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          171 SIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       171 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      |+.+|++++...+.+.       .++..+|.||...|+++.|...|.+..
T Consensus       474 AI~~~q~aL~l~~k~~-------~~~asig~iy~llgnld~Aid~fhKaL  516 (611)
T KOG1173|consen  474 AIDYYQKALLLSPKDA-------STHASIGYIYHLLGNLDKAIDHFHKAL  516 (611)
T ss_pred             HHHHHHHHHHcCCCch-------hHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence            9999999987665542       356678999999999999999999865

>PRK12370 invasion protein regulator; Provisional

Probab=99.05  E-value=1.3e-08  Score=95.63  Aligned_cols=165  Identities=9%  Similarity=0.025  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc----------CHHHHHHHHHHH
Q 024043           31 DAADLFDKAANSFK--LAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT----------SSNEAISCLEQA   98 (273)
Q Consensus        31 ~A~~~~~~a~~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~----------~~~eA~~~~~~A   98 (273)
                      +|..+|-++-..+.  ..+++++|+.+|.+|+++....      +.++..+|.+|...          ++++|+.++++|
T Consensus       257 da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~------a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A  330 (553)
T PRK12370        257 DSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNS------IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA  330 (553)
T ss_pred             HHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence            44456655432222  2345789999999998774321      34556666655321          479999999999


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 024043           99 VNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI  178 (273)
Q Consensus        99 l~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~  178 (273)
                      +++-...      +.++..+|.++...|++++|+.+|++|+++...      ...++..+|.++...|++++|+..|+++
T Consensus       331 l~ldP~~------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~------~~~a~~~lg~~l~~~G~~~eAi~~~~~A  398 (553)
T PRK12370        331 TELDHNN------PQALGLLGLINTIHSEYIVGSLLFKQANLLSPI------SADIKYYYGWNLFMAGQLEEALQTINEC  398 (553)
T ss_pred             HhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            9885443      347888999999999999999999999998543      2457889999999999999999999999


Q ss_pred             HHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          179 ARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      +...+.++.       .....+.++...|++++|...+++..
T Consensus       399 l~l~P~~~~-------~~~~~~~~~~~~g~~eeA~~~~~~~l  433 (553)
T PRK12370        399 LKLDPTRAA-------AGITKLWITYYHTGIDDAIRLGDELR  433 (553)
T ss_pred             HhcCCCChh-------hHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            876555421       11223344666889999988887653

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.05  E-value=2.3e-07  Score=92.19  Aligned_cols=180  Identities=12%  Similarity=-0.026  Sum_probs=142.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 024043           39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKE  117 (273)
Q Consensus        39 a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~  117 (273)
                      .+.++...|++++|...+.++.... ..++....+.+...+|.++... ++++|..++++++......|+....+.++.+
T Consensus       458 ~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~  536 (903)
T PRK04841        458 RAQVAINDGDPEEAERLAELALAEL-PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQ  536 (903)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence            4567778999999999999998753 2334455566677788888666 9999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHhccCCc--ccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhH
Q 024043          118 IAELYESEHNIEQTIVFFEKAADMFQNEEVT--TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGH  195 (273)
Q Consensus       118 lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~--~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~  195 (273)
                      +|.++...|++++|..++++++++.+..+..  .....++..+|.++...|++++|...+++++.......  .......
T Consensus       537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~--~~~~~~~  614 (903)
T PRK04841        537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ--PQQQLQC  614 (903)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC--chHHHHH
Confidence            9999999999999999999999998876532  22234466789999999999999999999864422211  1112234


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 024043          196 LLNAGICQLCKGDVVAITNALERYQD  221 (273)
Q Consensus       196 ~~~~gl~~l~~gd~~~A~~~~~~~~~  221 (273)
                      +..++.+++..||+..|.+.++....
T Consensus       615 ~~~la~~~~~~G~~~~A~~~l~~a~~  640 (903)
T PRK04841        615 LAMLAKISLARGDLDNARRYLNRLEN  640 (903)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            55677889999999999988887653

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.04  E-value=2.8e-09  Score=73.28  Aligned_cols=72  Identities=17%  Similarity=0.326  Sum_probs=64.1

Q ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCc-ccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 024043          109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT-TSANQCKQKVAQYAAELEQYHKSIEIYEEIAR  180 (273)
Q Consensus       109 ~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~-~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~  180 (273)
                      ...+.++.++|.+|..+|++++|+.+|++|+++.+..++. ...+.++.++|.++..+|++++|+++|++++.
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3467899999999999999999999999999997777764 45689999999999999999999999999964

...

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.04  E-value=5.9e-08  Score=82.19  Aligned_cols=184  Identities=20%  Similarity=0.165  Sum_probs=123.8

Q ss_pred             CCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHH-----------------------------
Q 024043           24 LFGSKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLA-----------------------------   60 (273)
Q Consensus        24 ~~~~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~-----------------------------   60 (273)
                      +.+...++|+++|...              |++|+..|..|.|+..++...                             
T Consensus        46 LLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR  125 (389)
T COG2956          46 LLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR  125 (389)
T ss_pred             HhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence            4566778999888763              889999999998888554332                             


Q ss_pred             --HHHHHcCC-HHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 024043           61 --NCHLKLES-KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFE  136 (273)
Q Consensus        61 --~~~~~~~~-~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~  136 (273)
                        +++..+-+ +..+-.++..+..+|... ++++||+.-++-..+-. .......|..+..++..+....+.+.|+..+.
T Consensus       126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~-q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~  204 (389)
T COG2956         126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGG-QTYRVEIAQFYCELAQQALASSDVDRARELLK  204 (389)
T ss_pred             HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC-ccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence              22221111 222333344444455444 55555555444333221 12344567888888888888899999999999


Q ss_pred             HHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHH
Q 024043          137 KAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNAL  216 (273)
Q Consensus       137 ~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~  216 (273)
                      +|+......      ..+-..+|.+....|+|+.|++.++++....+.      -..+.+-.+-.||...|+.......+
T Consensus       205 kAlqa~~~c------vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~------yl~evl~~L~~~Y~~lg~~~~~~~fL  272 (389)
T COG2956         205 KALQADKKC------VRASIILGRVELAKGDYQKAVEALERVLEQNPE------YLSEVLEMLYECYAQLGKPAEGLNFL  272 (389)
T ss_pred             HHHhhCccc------eehhhhhhHHHHhccchHHHHHHHHHHHHhChH------HHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            999775433      234567899999999999999999999753332      13345556678999999999988888


Q ss_pred             HHHH
Q 024043          217 ERYQ  220 (273)
Q Consensus       217 ~~~~  220 (273)
                      .++.
T Consensus       273 ~~~~  276 (389)
T COG2956         273 RRAM  276 (389)
T ss_pred             HHHH
Confidence            8776

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.03  E-value=7.8e-08  Score=91.37  Aligned_cols=208  Identities=16%  Similarity=0.159  Sum_probs=142.4

Q ss_pred             hHhhHHHHHHHHHHhhc----------cccCCCCCHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHH
Q 024043            4 QIARAEEFEKKAEKKLN----------GWGLFGSKYEDAADLFDKA-----------------ANSFKLAKSWDKAGATY   56 (273)
Q Consensus         4 ~~~~a~~l~~~Aek~~k----------~~~~~~~~~~~A~~~~~~a-----------------~~~~~~~~~~~~A~~~~   56 (273)
                      ....+..++..|.+.=.          +-+||++||+.++.++..+                 |.+|...|+|++|..+|
T Consensus       251 s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY  330 (1018)
T KOG2002|consen  251 SYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY  330 (1018)
T ss_pred             HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence            35677778888777443          2247889999999988765                 77899999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc--------------C---------------
Q 024043           57 VKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI--------------G---------------  106 (273)
Q Consensus        57 ~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~--------------g---------------  106 (273)
                      .++..+....     -.-.+..+|.+|... +++.|+-||++.+..++..              +               
T Consensus       331 ~~s~k~~~d~-----~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K  405 (1018)
T KOG2002|consen  331 MESLKADNDN-----FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGK  405 (1018)
T ss_pred             HHHHccCCCC-----ccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHH
Confidence            9998764322     122334445555333 5555555555443322111              0               


Q ss_pred             ---ChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-
Q 024043          107 ---RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS-  182 (273)
Q Consensus       107 ---~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~-  182 (273)
                         ....-..+|..++.+++. +++-.++..|.+|+++++..+.. --..+++++|..++.+|.+.+|.+.|.++.... 
T Consensus       406 ~~~~~~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~  483 (1018)
T KOG2002|consen  406 VLEQTPVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLL  483 (1018)
T ss_pred             HHhcccccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhh
Confidence               011224578899999988 88888899999999999988876 346889999999999999999999999996441 


Q ss_pred             --hccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHH
Q 024043          183 --LNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER  218 (273)
Q Consensus       183 --~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~  218 (273)
                        .+...++.-.-..-++++.|.-..+++..|.+.+..
T Consensus       484 ~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~  521 (1018)
T KOG2002|consen  484 EVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKS  521 (1018)
T ss_pred             hhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence              111110000112346777887788888888776665

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.02  E-value=4.4e-08  Score=84.88  Aligned_cols=150  Identities=13%  Similarity=0.039  Sum_probs=113.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc
Q 024043           47 KSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE  125 (273)
Q Consensus        47 ~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~  125 (273)
                      +..+.++..+.+.+.-.  --++...+..+.+.|.+|... ++++|+..|++|+.+....      +.++.++|.++...
T Consensus        40 ~~~e~~i~~~~~~l~~~--~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~------~~a~~~lg~~~~~~  111 (296)
T PRK11189         40 LQQEVILARLNQILASR--DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM------ADAYNYLGIYLTQA  111 (296)
T ss_pred             hHHHHHHHHHHHHHccc--cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHC
Confidence            45567777777766432  124456678899999999877 9999999999999986543      46999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHh
Q 024043          126 HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC  205 (273)
Q Consensus       126 g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~  205 (273)
                      |++++|+..|++|+++....      ..++.++|.++...|++++|++.|++++...++++.     ...+.   .+...
T Consensus       112 g~~~~A~~~~~~Al~l~P~~------~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~-----~~~~~---~l~~~  177 (296)
T PRK11189        112 GNFDAAYEAFDSVLELDPTY------NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY-----RALWL---YLAES  177 (296)
T ss_pred             CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-----HHHHH---HHHHc
Confidence            99999999999999986432      357899999999999999999999999876665531     11111   12234


Q ss_pred             cCCHHHHHHHHHH
Q 024043          206 KGDVVAITNALER  218 (273)
Q Consensus       206 ~gd~~~A~~~~~~  218 (273)
                      .+++.+|...+++
T Consensus       178 ~~~~~~A~~~l~~  190 (296)
T PRK11189        178 KLDPKQAKENLKQ  190 (296)
T ss_pred             cCCHHHHHHHHHH
Confidence            5677777777754

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.00  E-value=6.2e-09  Score=89.41  Aligned_cols=167  Identities=16%  Similarity=0.192  Sum_probs=72.6

Q ss_pred             CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHH
Q 024043           27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA   91 (273)
Q Consensus        27 ~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA   91 (273)
                      ++++.|...|.++              +.+ ...+++++|+..++++.+-   .+++    ..+..+..++... +++++
T Consensus        58 ~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~---~~~~----~~l~~~l~~~~~~~~~~~~  129 (280)
T PF13429_consen   58 GDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYER---DGDP----RYLLSALQLYYRLGDYDEA  129 (280)
T ss_dssp             --------------------------------------------------------------------H-HHHTT-HHHH
T ss_pred             cccccccccccccccccccccccccccccc-ccccccccccccccccccc---cccc----chhhHHHHHHHHHhHHHHH
Confidence            6777777777753              333 4667777777777665432   2222    3344455555544 77777


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHH
Q 024043           92 ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS  171 (273)
Q Consensus        92 ~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A  171 (273)
                      .+.+.++..    .......+..+...|.++...|++++|+.+|++|+++.+.+      ..++..++.+++..|+++++
T Consensus       130 ~~~l~~~~~----~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~------~~~~~~l~~~li~~~~~~~~  199 (280)
T PF13429_consen  130 EELLEKLEE----LPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDD------PDARNALAWLLIDMGDYDEA  199 (280)
T ss_dssp             HHHHHHHHH-----T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-------HHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHh----ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHCCChHHH
Confidence            777777553    23333556677778888887788888888888888776543      24566677777777777776


Q ss_pred             HHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHH
Q 024043          172 IEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER  218 (273)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~  218 (273)
                      .+.+.......+.++.       .+..++.++...|++.+|...+++
T Consensus       200 ~~~l~~~~~~~~~~~~-------~~~~la~~~~~lg~~~~Al~~~~~  239 (280)
T PF13429_consen  200 REALKRLLKAAPDDPD-------LWDALAAAYLQLGRYEEALEYLEK  239 (280)
T ss_dssp             HHHHHHHHHH-HTSCC-------HCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHCcCHHH-------HHHHHHHHhccccccccccccccc
Confidence            6666665443333321       334456667777777777776664

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.97  E-value=4.1e-08  Score=84.37  Aligned_cols=147  Identities=14%  Similarity=0.096  Sum_probs=132.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcC--Chh--HHHH
Q 024043           39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIG--RLS--MAAR  113 (273)
Q Consensus        39 a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g--~~~--~~a~  113 (273)
                      .++.|.-.+.++++++.|++|..+...++|+.-.-+++..+|..|-.. |+++|+-+..+|.++....+  |..  -.+.
T Consensus       128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~  207 (518)
T KOG1941|consen  128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM  207 (518)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence            578888899999999999999999999999999999999999999888 99999999999999998765  332  3466


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHhcc
Q 024043          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA--RQSLNN  185 (273)
Q Consensus       114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~--~~~~~~  185 (273)
                      ++..++..+...|+.-.|.++.++|..+.-..|+....+.|+.-+|+||...|+.+.|..-|+.+.  ...+|+
T Consensus       208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gd  281 (518)
T KOG1941|consen  208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGD  281 (518)
T ss_pred             HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhh
Confidence            888999999999999999999999999999999988889999999999999999999999999994  335555

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.93  E-value=1.9e-07  Score=88.81  Aligned_cols=173  Identities=15%  Similarity=0.143  Sum_probs=130.3

Q ss_pred             CCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc----C
Q 024043           27 SKYEDAADLFDKA---------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT----S   87 (273)
Q Consensus        27 ~~~~~A~~~~~~a---------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~----~   87 (273)
                      +||-.|..+|..+               |-||...++.+.|+.+|++++.+-.      ..+.++.-+|.+-...    .
T Consensus       178 kdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp------~~v~alv~L~~~~l~~~d~~s  251 (1018)
T KOG2002|consen  178 KDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDP------TCVSALVALGEVDLNFNDSDS  251 (1018)
T ss_pred             ccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcCh------hhHHHHHHHHHHHHHccchHH
Confidence            7888888888875               5688888899999999998888743      3344555555544332    5


Q ss_pred             HHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcC
Q 024043           88 SNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQ  167 (273)
Q Consensus        88 ~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~  167 (273)
                      +..++..+.+|..+...+-+      +++.++..|.-.|+|..+...+..|+.....   ....+..+..+|..|..+|+
T Consensus       252 ~~~~~~ll~~ay~~n~~nP~------~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~---~~~~aes~Y~~gRs~Ha~Gd  322 (1018)
T KOG2002|consen  252 YKKGVQLLQRAYKENNENPV------ALNHLANHFYFKKDYERVWHLAEHAIKNTEN---KSIKAESFYQLGRSYHAQGD  322 (1018)
T ss_pred             HHHHHHHHHHHHhhcCCCcH------HHHHHHHHHhhcccHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHhhcc
Confidence            67788888887776655544      8888888888889999999999988876522   23446778999999999999


Q ss_pred             HHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          168 YHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       168 y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      |++|..+|.++.....++      .--.++.+|-+++..||+..+..+|+...
T Consensus       323 ~ekA~~yY~~s~k~~~d~------~~l~~~GlgQm~i~~~dle~s~~~fEkv~  369 (1018)
T KOG2002|consen  323 FEKAFKYYMESLKADNDN------FVLPLVGLGQMYIKRGDLEESKFCFEKVL  369 (1018)
T ss_pred             HHHHHHHHHHHHccCCCC------ccccccchhHHHHHhchHHHHHHHHHHHH
Confidence            999999999987543333      11234667888999999999999998754

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.93  E-value=1.1e-06  Score=87.37  Aligned_cols=140  Identities=11%  Similarity=0.042  Sum_probs=119.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCCh--hHHHHHH
Q 024043           39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL--SMAARYY  115 (273)
Q Consensus        39 a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~--~~~a~~l  115 (273)
                      .|.++...|++++|...+.++....+..++....+.++..++.++... ++++|..++++++.+....|..  ...+..+
T Consensus       497 lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  576 (903)
T PRK04841        497 LGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLL  576 (903)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence            456677899999999999999999999999888888999999998777 9999999999999999887643  2334556


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043          116 KEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA  179 (273)
Q Consensus       116 ~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~  179 (273)
                      ..+|.++...|++++|..++.+++++.+..+. .....++..+|.++...|++++|...++++.
T Consensus       577 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~  639 (903)
T PRK04841        577 RIRAQLLWEWARLDEAEQCARKGLEVLSNYQP-QQQLQCLAMLAKISLARGDLDNARRYLNRLE  639 (903)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHhHHhhhccCc-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            77899998899999999999999999886553 3345677889999999999999999998874

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.91  E-value=2.6e-08  Score=76.97  Aligned_cols=99  Identities=9%  Similarity=-0.038  Sum_probs=82.0

Q ss_pred             HHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHH
Q 024043           76 YVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQC  154 (273)
Q Consensus        76 ~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~  154 (273)
                      +...|.++... ++++|+.+|++++.+-...      ..++.++|.++...|++++|+.+|++|+++....      ...
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~------~~a   94 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWS------WRAHIALAGTWMMLKEYTTAINFYGHALMLDASH------PEP   94 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC------cHH
Confidence            33456666555 9999999999998775433      4689999999999999999999999999875422      467


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhccc
Q 024043          155 KQKVAQYAAELEQYHKSIEIYEEIARQSLNNN  186 (273)
Q Consensus       155 ~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~  186 (273)
                      +.++|.++..+|++++|++.|++++...++++
T Consensus        95 ~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~  126 (144)
T PRK15359         95 VYQTGVCLKMMGEPGLAREAFQTAIKMSYADA  126 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence            99999999999999999999999987766653

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.91  E-value=1.2e-07  Score=84.32  Aligned_cols=201  Identities=15%  Similarity=0.206  Sum_probs=137.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHH
Q 024043           36 FDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARY  114 (273)
Q Consensus        36 ~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~  114 (273)
                      |...+.+|....+..+-...|.+|..+-....+      +|..-|.++.-+ ++++|+.-|++|+.+-.+.      +-.
T Consensus       363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d------vYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~------~~~  430 (606)
T KOG0547|consen  363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPD------VYYHRGQMRFLLQQYEEAIADFQKAISLDPEN------AYA  430 (606)
T ss_pred             HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc------hhHhHHHHHHHHHHHHHHHHHHHHHhhcChhh------hHH
Confidence            334466677777788888888888877655443      566677777666 8899999999998876554      346


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhh
Q 024043          115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKG  194 (273)
Q Consensus       115 l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~  194 (273)
                      +..++-+...++.+++++..|+.+..-|+      ...+++.-.|.++..++++++|++.|..++.........-.+..-
T Consensus       431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP------~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~p  504 (606)
T KOG0547|consen  431 YIQLCCALYRQHKIAESMKTFEEAKKKFP------NCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAP  504 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCC------CCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchh
Confidence            67777777777889999999999888885      445889999999999999999999999998655443222233433


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH----------HHHHHhhcCHhHHHHHHHhhhccCCCchhHHHHH
Q 024043          195 HLLNAGICQLCKGDVVAITNALERYQD----------IAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLL  255 (273)
Q Consensus       195 ~~~~~gl~~l~~gd~~~A~~~~~~~~~----------ll~a~~~~d~~~~~~~~~~~~~~~~ld~~~~~~l  255 (273)
                      ...++.++..-.+|+.+|.+.+++...          -+..++. -.+.++++|.-|.+...|-.-+..|+
T Consensus       505 lV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~l-Q~~~i~eAielFEksa~lArt~~E~~  574 (606)
T KOG0547|consen  505 LVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFEL-QRGKIDEAIELFEKSAQLARTESEMV  574 (606)
T ss_pred             hhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHhHHHHH
Confidence            444454554456889999888887651          1111111 12456667766666555544444333

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.89  E-value=7.1e-08  Score=81.93  Aligned_cols=169  Identities=8%  Similarity=0.091  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHH
Q 024043           35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAAR  113 (273)
Q Consensus        35 ~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~  113 (273)
                      +=.+.|.||...|.+.+|-..+..+++-++..       ..|.-++.+|... +|..|+..+.+-++.+.      ..-.
T Consensus       225 Wk~Q~gkCylrLgm~r~AekqlqssL~q~~~~-------dTfllLskvY~ridQP~~AL~~~~~gld~fP------~~VT  291 (478)
T KOG1129|consen  225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHP-------DTFLLLSKVYQRIDQPERALLVIGEGLDSFP------FDVT  291 (478)
T ss_pred             HHHHHHHHHHHhcChhhhHHHHHHHhhcCCch-------hHHHHHHHHHHHhccHHHHHHHHhhhhhcCC------chhh
Confidence            44577999999999999999999888765432       3677778888777 88888888777766553      2234


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHh---------------------------cc-CCcccHHHHHHHHHHHHHHh
Q 024043          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQ---------------------------NE-EVTTSANQCKQKVAQYAAEL  165 (273)
Q Consensus       114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~---------------------------~~-~~~~~~~~~~~~~a~~~~~~  165 (273)
                      .+..++.+++.+++++.|+++|+.+++...                           .. .......+.+.++|.|..-.
T Consensus       292 ~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~ya  371 (478)
T KOG1129|consen  292 YLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYA  371 (478)
T ss_pred             hhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhh
Confidence            566677777777777777777777655422                           11 00122346677888888888


Q ss_pred             cCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          166 EQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       166 g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      ++|+-++..|+++.....+.    ....+.|+++|.+....||+.-|.++|+-..
T Consensus       372 qQ~D~~L~sf~RAlstat~~----~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL  422 (478)
T KOG1129|consen  372 QQIDLVLPSFQRALSTATQP----GQAADVWYNLGFVAVTIGDFNLAKRCFRLAL  422 (478)
T ss_pred             cchhhhHHHHHHHHhhccCc----chhhhhhhccceeEEeccchHHHHHHHHHHh
Confidence            88888888888886443322    1355778888888788888888888888654

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.89  E-value=2.2e-07  Score=88.75  Aligned_cols=164  Identities=13%  Similarity=0.082  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHH
Q 024043           34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAA  112 (273)
Q Consensus        34 ~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a  112 (273)
                      ++..++-.+....+....+.+.+-++..+.++..+   -+.++.++|.+.... ++++|..+++.++++..+.-      
T Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~------  120 (694)
T PRK15179         50 ELLQQARQVLERHAAVHKPAAALPELLDYVRRYPH---TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSS------  120 (694)
T ss_pred             HHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhccc---cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcH------
Confidence            45555555666666666666666666666554332   356777777777666 78888888888887766543      


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhch
Q 024043          113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGV  192 (273)
Q Consensus       113 ~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~  192 (273)
                      .+..+++.++...+++++|+..+++++..-..      .+..+..+|.++.++|+|++|+++|++++...++       .
T Consensus       121 ~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~------~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~-------~  187 (694)
T PRK15179        121 EAFILMLRGVKRQQGIEAGRAEIELYFSGGSS------SAREILLEAKSWDEIGQSEQADACFERLSRQHPE-------F  187 (694)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC------CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC-------c
Confidence            36777788888888888888888887766432      2456777888888888888888888888652222       2


Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043          193 KGHLLNAGICQLCKGDVVAITNALERY  219 (273)
Q Consensus       193 ~~~~~~~gl~~l~~gd~~~A~~~~~~~  219 (273)
                      ...+...|.++-..|+.+.|..+|++.
T Consensus       188 ~~~~~~~a~~l~~~G~~~~A~~~~~~a  214 (694)
T PRK15179        188 ENGYVGWAQSLTRRGALWRARDVLQAG  214 (694)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            345666677777778888777777765

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.87  E-value=5.1e-07  Score=69.75  Aligned_cols=136  Identities=17%  Similarity=0.160  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCC
Q 024043           29 YEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR  107 (273)
Q Consensus        29 ~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~  107 (273)
                      -++|...|..+-..+. .+++..+...+.+...   ..++..-+..+...++.++... ++++|+..|++++.-.   .+
T Consensus         8 ~~~a~~~y~~~~~~~~-~~~~~~~~~~~~~l~~---~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d   80 (145)
T PF09976_consen    8 AEQASALYEQALQALQ-AGDPAKAEAAAEQLAK---DYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA---PD   80 (145)
T ss_pred             HHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH---HCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CC
Confidence            4567788888777664 7888887665555443   4455555666777788887666 9999999999998733   56


Q ss_pred             hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 024043          108 LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI  178 (273)
Q Consensus       108 ~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~  178 (273)
                      +.....+..+++.++...|++++|+..++.       .......+..+...|+++...|++++|+..|+++
T Consensus        81 ~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-------~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   81 PELKPLARLRLARILLQQGQYDEALATLQQ-------IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-------ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            667778889999999999999999999855       2233345667889999999999999999999986

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.84  E-value=7.8e-08  Score=74.32  Aligned_cols=106  Identities=12%  Similarity=0.093  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHH
Q 024043           93 SCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSI  172 (273)
Q Consensus        93 ~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~  172 (273)
                      .++++|+.+-...         +...|.++...|++++|+.+|++++.+-..      ...++..+|.++..+|+|++|+
T Consensus        14 ~~~~~al~~~p~~---------~~~~g~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~~g~~~~A~   78 (144)
T PRK15359         14 DILKQLLSVDPET---------VYASGYASWQEGDYSRAVIDFSWLVMAQPW------SWRAHIALAGTWMMLKEYTTAI   78 (144)
T ss_pred             HHHHHHHHcCHHH---------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHHhhHHHHH
Confidence            5677777765432         456789999999999999999999977432      3478999999999999999999


Q ss_pred             HHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          173 EIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      ..|++++...+++       ...++++|.|+...|++.+|..+++...
T Consensus        79 ~~y~~Al~l~p~~-------~~a~~~lg~~l~~~g~~~eAi~~~~~Al  119 (144)
T PRK15359         79 NFYGHALMLDASH-------PEPVYQTGVCLKMMGEPGLAREAFQTAI  119 (144)
T ss_pred             HHHHHHHhcCCCC-------cHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999998755544       3467899999999999999999999864

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.84  E-value=1.5e-08  Score=86.02  Aligned_cols=119  Identities=11%  Similarity=0.114  Sum_probs=101.3

Q ss_pred             CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc
Q 024043           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE  166 (273)
Q Consensus        87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g  166 (273)
                      +|+-|+.+|++.+.+-...+.      .+.|+|.|...-+++|-++..+++|+....+.+   .++++|.++|.+.+..|
T Consensus       339 ~PE~AlryYRRiLqmG~~spe------Lf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~---~aaDvWYNlg~vaV~iG  409 (478)
T KOG1129|consen  339 NPEMALRYYRRILQMGAQSPE------LFCNIGLCCLYAQQIDLVLPSFQRALSTATQPG---QAADVWYNLGFVAVTIG  409 (478)
T ss_pred             ChHHHHHHHHHHHHhcCCChH------HHhhHHHHHHhhcchhhhHHHHHHHHhhccCcc---hhhhhhhccceeEEecc
Confidence            789999999999887665543      889999999999999999999999999987665   66799999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 024043          167 QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQD  221 (273)
Q Consensus       167 ~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~  221 (273)
                      ++.-|..+|+-++....       ...+.+.+++..-...||+.+|+..++...+
T Consensus       410 D~nlA~rcfrlaL~~d~-------~h~ealnNLavL~~r~G~i~~Arsll~~A~s  457 (478)
T KOG1129|consen  410 DFNLAKRCFRLALTSDA-------QHGEALNNLAVLAARSGDILGARSLLNAAKS  457 (478)
T ss_pred             chHHHHHHHHHHhccCc-------chHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence            99999999998864322       3456788999888899999999998887653

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.82  E-value=2.7e-07  Score=75.19  Aligned_cols=117  Identities=9%  Similarity=0.138  Sum_probs=96.7

Q ss_pred             CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHH-HHh
Q 024043           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYA-AEL  165 (273)
Q Consensus        87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~-~~~  165 (273)
                      ++++++..+++++.......      ..|..+|.+|...|++++|+..|++|+.+....      ..++..+|.++ ...
T Consensus        54 ~~~~~i~~l~~~L~~~P~~~------~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~------~~~~~~lA~aL~~~~  121 (198)
T PRK10370         54 TPEAQLQALQDKIRANPQNS------EQWALLGEYYLWRNDYDNALLAYRQALQLRGEN------AELYAALATVLYYQA  121 (198)
T ss_pred             hHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhc
Confidence            77889999999988765543      489999999999999999999999999987543      46788899875 677


Q ss_pred             cC--HHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043          166 EQ--YHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDI  222 (273)
Q Consensus       166 g~--y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~l  222 (273)
                      |+  +++|.+.+++++...+++.       ..++.+|.++...||+.+|..+|++..++
T Consensus       122 g~~~~~~A~~~l~~al~~dP~~~-------~al~~LA~~~~~~g~~~~Ai~~~~~aL~l  173 (198)
T PRK10370        122 GQHMTPQTREMIDKALALDANEV-------TALMLLASDAFMQADYAQAIELWQKVLDL  173 (198)
T ss_pred             CCCCcHHHHHHHHHHHHhCCCCh-------hHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            77  5999999999987666553       36778899999999999999999987543

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.81  E-value=6.9e-07  Score=71.07  Aligned_cols=95  Identities=12%  Similarity=0.113  Sum_probs=67.6

Q ss_pred             CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          106 GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       106 g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                      ......+.++.++|..+...|++++|+.+|++|+.+.....   ....++..+|.++..+|+|++|+..|++++...+..
T Consensus        29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  105 (172)
T PRK02603         29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN---DRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ  105 (172)
T ss_pred             ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            34556677888888888888999999999998888754322   234678888999999999999999988887654433


Q ss_pred             chhhhchhhHHHHHHHHHHhcCCHH
Q 024043          186 NLLKYGVKGHLLNAGICQLCKGDVV  210 (273)
Q Consensus       186 ~~~~~~~~~~~~~~gl~~l~~gd~~  210 (273)
                      .       ..+..+|.++...|+..
T Consensus       106 ~-------~~~~~lg~~~~~~g~~~  123 (172)
T PRK02603        106 P-------SALNNIAVIYHKRGEKA  123 (172)
T ss_pred             H-------HHHHHHHHHHHHcCChH
Confidence            1       23445566666655543

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.80  E-value=4.6e-07  Score=71.79  Aligned_cols=118  Identities=9%  Similarity=-0.037  Sum_probs=81.9

Q ss_pred             cCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 024043          105 IGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN  184 (273)
Q Consensus       105 ~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~  184 (273)
                      .......+.++..+|.++...|++++|+.+|++|+.+...   +.....++.++|.++...|++++|+.+|++++...+.
T Consensus        28 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~---~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~  104 (168)
T CHL00033         28 TTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID---PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF  104 (168)
T ss_pred             CCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc---chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            3445567889999999999999999999999999998542   2233468999999999999999999999999755333


Q ss_pred             cchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 024043          185 NNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDIAAS  225 (273)
Q Consensus       185 ~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~a  225 (273)
                      ...........+..+|..+...|++..|...+++...+.+.
T Consensus       105 ~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~  145 (168)
T CHL00033        105 LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQ  145 (168)
T ss_pred             cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHH
Confidence            22111112222333333334778887777776665444433

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.80  E-value=1.6e-06  Score=76.76  Aligned_cols=110  Identities=15%  Similarity=0.102  Sum_probs=83.4

Q ss_pred             CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc
Q 024043           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE  166 (273)
Q Consensus        87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g  166 (273)
                      ++++|.+.|++|+.      +-.....++.++|..++.+|+.++|+++|-+--.+..      ..++++.+++.+|..+.
T Consensus       505 d~dka~~~ykeal~------ndasc~ealfniglt~e~~~~ldeald~f~klh~il~------nn~evl~qianiye~le  572 (840)
T KOG2003|consen  505 DLDKAAEFYKEALN------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILL------NNAEVLVQIANIYELLE  572 (840)
T ss_pred             cHHHHHHHHHHHHc------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHhh
Confidence            66777777777653      3445667899999999999999999999988776664      34688999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHH
Q 024043          167 QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNA  215 (273)
Q Consensus       167 ~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~  215 (273)
                      ++.+|++.|.++...-+.++.       .+-+++..|-..||..+|-+|
T Consensus       573 d~aqaie~~~q~~slip~dp~-------ilskl~dlydqegdksqafq~  614 (840)
T KOG2003|consen  573 DPAQAIELLMQANSLIPNDPA-------ILSKLADLYDQEGDKSQAFQC  614 (840)
T ss_pred             CHHHHHHHHHHhcccCCCCHH-------HHHHHHHHhhcccchhhhhhh
Confidence            999999999988654455432       455667777777777666554

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.78  E-value=4.7e-07  Score=69.92  Aligned_cols=99  Identities=11%  Similarity=0.058  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhh
Q 024043          110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLK  189 (273)
Q Consensus       110 ~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~  189 (273)
                      ..-..+..+|..+...|++++|...|+-.+.+-      +.....+.++|.++..+|+|.+|+..|.+++...++++   
T Consensus        33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D------p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp---  103 (157)
T PRK15363         33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD------AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP---  103 (157)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc---
Confidence            334456677777777899999999998877664      23357789999999999999999999999987777664   


Q ss_pred             hchhhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 024043          190 YGVKGHLLNAGICQLCKGDVVAITNALERYQD  221 (273)
Q Consensus       190 ~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~  221 (273)
                          ..++++|.|++..|+.+.|+.+|+....
T Consensus       104 ----~~~~~ag~c~L~lG~~~~A~~aF~~Ai~  131 (157)
T PRK15363        104 ----QAPWAAAECYLACDNVCYAIKALKAVVR  131 (157)
T ss_pred             ----hHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                3568899999999999999999998643

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.77  E-value=4e-07  Score=72.12  Aligned_cols=113  Identities=13%  Similarity=0.096  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCC-
Q 024043           30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR-  107 (273)
Q Consensus        30 ~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~-  107 (273)
                      +..+..+...|.++...|++++|...|.+++.+..   ++...+.++.++|.++... ++++|+.+|++|+.+.+..+. 
T Consensus        32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~---~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~  108 (168)
T CHL00033         32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI---DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQA  108 (168)
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc---cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH
Confidence            34455666667777778888888888888877632   3334455777788888766 888888888888877544332 


Q ss_pred             hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 024043          108 LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE  145 (273)
Q Consensus       108 ~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~  145 (273)
                      ....+.++.++|..+...|++++|+..+.+|+.+++..
T Consensus       109 ~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a  146 (168)
T CHL00033        109 LNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQA  146 (168)
T ss_pred             HHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence            22234444444444447777777777777777777654

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.75  E-value=5.3e-07  Score=87.99  Aligned_cols=167  Identities=13%  Similarity=0.046  Sum_probs=99.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 024043           39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKE  117 (273)
Q Consensus        39 a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~  117 (273)
                      ++.+ ...|++++|+..|+++......  .+.. +..+  ++.+|... ++++|+.+|++++..-.  .+....-.....
T Consensus       244 l~~L-l~~g~~~eA~~~~~~ll~~~~~--~P~~-a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p--~~~~~~~~~~~~  315 (765)
T PRK10049        244 LGAL-LARDRYKDVISEYQRLKAEGQI--IPPW-AQRW--VASAYLKLHQPEKAQSILTELFYHPE--TIADLSDEELAD  315 (765)
T ss_pred             HHHH-HHhhhHHHHHHHHHHhhccCCC--CCHH-HHHH--HHHHHHhcCCcHHHHHHHHHHhhcCC--CCCCCChHHHHH
Confidence            3434 3557788888888776544211  1111 1222  35566555 78888888887766432  221111234456


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHhc--------cCCcc-cHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchh
Q 024043          118 IAELYESEHNIEQTIVFFEKAADMFQN--------EEVTT-SANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLL  188 (273)
Q Consensus       118 lg~~~~~~g~~~~A~~~y~~Al~~~~~--------~~~~~-~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~  188 (273)
                      ++.++...|++++|+..++++.+..+.        ...+. .....+..+|.++...|++++|++.+++++...+++.  
T Consensus       316 L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~--  393 (765)
T PRK10049        316 LFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ--  393 (765)
T ss_pred             HHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--
Confidence            666667777777777777777776531        11122 2234566777777777777777777777766555442  


Q ss_pred             hhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          189 KYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       189 ~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                           ..++.++.++...|++.+|...+++..
T Consensus       394 -----~l~~~lA~l~~~~g~~~~A~~~l~~al  420 (765)
T PRK10049        394 -----GLRIDYASVLQARGWPRAAENELKKAE  420 (765)
T ss_pred             -----HHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence                 245566777777777777777777644

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.74  E-value=1.4e-06  Score=85.15  Aligned_cols=197  Identities=8%  Similarity=-0.008  Sum_probs=142.7

Q ss_pred             CCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHH
Q 024043           27 SKYEDAADLFDKA---------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNE   90 (273)
Q Consensus        27 ~~~~~A~~~~~~a---------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~e   90 (273)
                      +++++|...|.++               +.+|...|++++|+..|.++.....  .+..........++.++.+. ++++
T Consensus       251 g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p--~~~~~~~~~~~~L~~a~~~~g~~~e  328 (765)
T PRK10049        251 DRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPE--TIADLSDEELADLFYSLLESENYPG  328 (765)
T ss_pred             hhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCC--CCCCCChHHHHHHHHHHHhcccHHH
Confidence            6778888877754               4578889999999999998765321  11111124455667677666 9999


Q ss_pred             HHHHHHHHHHHHHhcCChh---------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHH
Q 024043           91 AISCLEQAVNMFCDIGRLS---------MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQY  161 (273)
Q Consensus        91 A~~~~~~Al~~~~~~g~~~---------~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~  161 (273)
                      |+..++++.......-...         ....++..+|.++...|++++|+..+++++...+..      ...+..+|.+
T Consensus       329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n------~~l~~~lA~l  402 (765)
T PRK10049        329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN------QGLRIDYASV  402 (765)
T ss_pred             HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHH
Confidence            9999998876533322222         234678899999999999999999999999886433      4689999999


Q ss_pred             HHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCHhHHHHHHHh
Q 024043          162 AAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDIAASMDEEDIAKFTDVVKE  240 (273)
Q Consensus       162 ~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~a~~~~d~~~~~~~~~~  240 (273)
                      +...|++++|+..+++++...+++.       ..++..+.+.+..|++.+|...+++..+..  -++..+..+.....-
T Consensus       403 ~~~~g~~~~A~~~l~~al~l~Pd~~-------~l~~~~a~~al~~~~~~~A~~~~~~ll~~~--Pd~~~~~~~~~~~~~  472 (765)
T PRK10049        403 LQARGWPRAAENELKKAEVLEPRNI-------NLEVEQAWTALDLQEWRQMDVLTDDVVARE--PQDPGVQRLARARDV  472 (765)
T ss_pred             HHhcCCHHHHHHHHHHHHhhCCCCh-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHh
Confidence            9999999999999999987666653       244566778899999999999888863211  133334455555543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.74  E-value=3.4e-07  Score=78.57  Aligned_cols=150  Identities=15%  Similarity=0.173  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHH
Q 024043           36 FDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARY  114 (273)
Q Consensus        36 ~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~  114 (273)
                      +..+..++...++++++...+.++..    ..........+...|.++.+. ++++|+++|++|+++.+...+      +
T Consensus       113 l~~~l~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~------~  182 (280)
T PF13429_consen  113 LLSALQLYYRLGDYDEAEELLEKLEE----LPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD------A  182 (280)
T ss_dssp             -----H-HHHTT-HHHHHHHHHHHHH-----T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH------H
T ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHHh----ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH------H
Confidence            34456667778888888888888663    222234466777888888766 888888888888888765433      6


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhh
Q 024043          115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKG  194 (273)
Q Consensus       115 l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~  194 (273)
                      +..++.++...|+++++.+.+.......+.+.      ..+..+|.++..+|++++|+.+|+++....++++........
T Consensus       183 ~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~------~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~  256 (280)
T PF13429_consen  183 RNALAWLLIDMGDYDEAREALKRLLKAAPDDP------DLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYAD  256 (280)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSC------CHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHHCcCHH------HHHHHHHHHhcccccccccccccccccccccccccccccccc
Confidence            67778888888888886666666555543322      235677888888888888888888888877777655444555


Q ss_pred             HHHHHHH
Q 024043          195 HLLNAGI  201 (273)
Q Consensus       195 ~~~~~gl  201 (273)
                      ++...|.
T Consensus       257 ~l~~~g~  263 (280)
T PF13429_consen  257 ALEQAGR  263 (280)
T ss_dssp             HHT----
T ss_pred             ccccccc
Confidence            5555443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.73  E-value=2.6e-07  Score=88.25  Aligned_cols=158  Identities=13%  Similarity=0.065  Sum_probs=125.7

Q ss_pred             hhHHHHHHHHHHhhccccCC-------------CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Q 024043            6 ARAEEFEKKAEKKLNGWGLF-------------GSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEA   72 (273)
Q Consensus         6 ~~a~~l~~~Aek~~k~~~~~-------------~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~a   72 (273)
                      +-.++++.+++..+..-+..             --+|..=.+.+..+|.+....|++++|...++.++++...      -
T Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd------~  119 (694)
T PRK15179         46 EAGRELLQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD------S  119 (694)
T ss_pred             hHHHHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC------c
Confidence            34489999999988721111             1244444566667899999999999999999999988632      2


Q ss_pred             HHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccH
Q 024043           73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSA  151 (273)
Q Consensus        73 a~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~  151 (273)
                      ..+..+.+.+.++. ++++|+..+++++..-...      +..+..+|.++...|+|++|+.+|++++.  ...    ..
T Consensus       120 ~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~------~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--~~p----~~  187 (694)
T PRK15179        120 SEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS------AREILLEAKSWDEIGQSEQADACFERLSR--QHP----EF  187 (694)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC------HHHHHHHHHHHHHhcchHHHHHHHHHHHh--cCC----Cc
Confidence            34566678888776 9999999999999876554      45899999999999999999999999998  221    23


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 024043          152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQ  181 (273)
Q Consensus       152 ~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~  181 (273)
                      ..++..+|.++...|+.++|...|++++..
T Consensus       188 ~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~  217 (694)
T PRK15179        188 ENGYVGWAQSLTRRGALWRARDVLQAGLDA  217 (694)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            478999999999999999999999999754

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=2.3e-06  Score=76.93  Aligned_cols=180  Identities=13%  Similarity=0.081  Sum_probs=128.7

Q ss_pred             CCHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHhcc-CHHHH
Q 024043           27 SKYEDAADLFDKA-------------ANSFKLAKSWDKAGATYVKLANCHLKLE-SKHEAAQAYVDAAHCYKKT-SSNEA   91 (273)
Q Consensus        27 ~~~~~A~~~~~~a-------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~aa~~~~~~~~~~~~~-~~~eA   91 (273)
                      .+++.|...|..+             +..|-..|.+.+.+.....+.+.-.... +..-.+.++..+|+.|.+. +++.+
T Consensus       238 k~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~a  317 (539)
T KOG0548|consen  238 KDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGA  317 (539)
T ss_pred             hhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHH
Confidence            3555555555554             4455556666666666666555544332 3344677788888899877 99999


Q ss_pred             HHHHHHHHHHHHhc---------------------CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCccc
Q 024043           92 ISCLEQAVNMFCDI---------------------GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTS  150 (273)
Q Consensus        92 ~~~~~~Al~~~~~~---------------------g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~  150 (273)
                      +.+|++++.-++.-                     -++.. +.-...-|..+...|+|..|+.+|.+|+..-+.      
T Consensus       318 i~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~------  390 (539)
T KOG0548|consen  318 IKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE------  390 (539)
T ss_pred             HHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc------
Confidence            99999998877651                     11111 334445688888889999999999998877532      


Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          151 ANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       151 ~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      -+..+.+.|.+|.++|.+..|+...+.++...+.       ....+++-|.|+..+.++..|.++|++..
T Consensus       391 Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-------~~kgy~RKg~al~~mk~ydkAleay~eal  453 (539)
T KOG0548|consen  391 DARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-------FIKAYLRKGAALRAMKEYDKALEAYQEAL  453 (539)
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2467999999999999999999999988754222       22345677888888889999999888765

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.67  E-value=1.1e-06  Score=77.78  Aligned_cols=163  Identities=12%  Similarity=-0.055  Sum_probs=93.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 024043           39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKE  117 (273)
Q Consensus        39 a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~  117 (273)
                      -+.++...|++++|...++++++...   +...   ++.. +..+... ++..+.....+++..  ...........+..
T Consensus        49 ~a~~~~~~g~~~~A~~~~~~~l~~~P---~~~~---a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~  119 (355)
T cd05804          49 EALSAWIAGDLPKALALLEQLLDDYP---RDLL---ALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGM  119 (355)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCC---CcHH---HHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHH
Confidence            35566677888888888888776532   1111   1111 1122111 222222223333332  23344445566667


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHH
Q 024043          118 IAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLL  197 (273)
Q Consensus       118 lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (273)
                      +|.++...|++++|...+++++++.+..      ..++..+|.++...|++++|+.++++++.....++.   .....+.
T Consensus       120 ~a~~~~~~G~~~~A~~~~~~al~~~p~~------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~---~~~~~~~  190 (355)
T cd05804         120 LAFGLEEAGQYDRAEEAARRALELNPDD------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSM---LRGHNWW  190 (355)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCC------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcc---hhHHHHH
Confidence            7777777788888888888887775433      345677777888888888888888777643322110   1112334


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHH
Q 024043          198 NAGICQLCKGDVVAITNALERY  219 (273)
Q Consensus       198 ~~gl~~l~~gd~~~A~~~~~~~  219 (273)
                      .++.+++..|++++|...+++.
T Consensus       191 ~la~~~~~~G~~~~A~~~~~~~  212 (355)
T cd05804         191 HLALFYLERGDYEAALAIYDTH  212 (355)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHH
Confidence            5667777788887777777764

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.67  E-value=4.7e-06  Score=64.36  Aligned_cols=134  Identities=16%  Similarity=0.132  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccH
Q 024043           72 AAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSA  151 (273)
Q Consensus        72 aa~~~~~~~~~~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~  151 (273)
                      +...|..+-..+...++..+...+++-+   ...++..-...+...+|.++...|++++|...|+++++-.   .++...
T Consensus        11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~---~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d~~l~   84 (145)
T PF09976_consen   11 ASALYEQALQALQAGDPAKAEAAAEQLA---KDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA---PDPELK   84 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHH---HHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCHHHH
Confidence            3444444444444446666555444433   3445555677888899999999999999999999999854   233445


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043          152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY  219 (273)
Q Consensus       152 ~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~  219 (273)
                      ..+..++|.++...|+|++|+..++.+.    +.   .+ ........|.+++..||.++|+.+|+..
T Consensus        85 ~~a~l~LA~~~~~~~~~d~Al~~L~~~~----~~---~~-~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   85 PLARLRLARILLQQGQYDEALATLQQIP----DE---AF-KALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhcc----Cc---ch-HHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            6778899999999999999999997642    11   11 1224455799999999999999999863

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.65  E-value=1.9e-06  Score=78.08  Aligned_cols=196  Identities=15%  Similarity=0.143  Sum_probs=124.5

Q ss_pred             chHhhHHHHHHHHHHhhc-cccCC------CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 024043            3 DQIARAEEFEKKAEKKLN-GWGLF------GSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQA   75 (273)
Q Consensus         3 ~~~~~a~~l~~~Aek~~k-~~~~~------~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~   75 (273)
                      |+.+++..||+++.  +. ....|      .|..-+||.   .+|.....-++=..|+.++++++++-...      -.+
T Consensus       287 dPf~eG~~lm~nG~--L~~A~LafEAAVkqdP~haeAW~---~LG~~qaENE~E~~ai~AL~rcl~LdP~N------lea  355 (579)
T KOG1125|consen  287 DPFKEGCNLMKNGD--LSEAALAFEAAVKQDPQHAEAWQ---KLGITQAENENEQNAISALRRCLELDPTN------LEA  355 (579)
T ss_pred             ChHHHHHHHHhcCC--chHHHHHHHHHHhhChHHHHHHH---HhhhHhhhccchHHHHHHHHHHHhcCCcc------HHH
Confidence            45666666666655  32 11111      155455554   35777777778888999999988774221      123


Q ss_pred             HHHHHHHHhcc-CHHHHHH----------------------------------HHHHHHHHHHhcCCh---hHHHHHHHH
Q 024043           76 YVDAAHCYKKT-SSNEAIS----------------------------------CLEQAVNMFCDIGRL---SMAARYYKE  117 (273)
Q Consensus        76 ~~~~~~~~~~~-~~~eA~~----------------------------------~~~~Al~~~~~~g~~---~~~a~~l~~  117 (273)
                      +..++.+|... .-.+|+.                                  ++....++|.+....   ..-+.+...
T Consensus       356 LmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~  435 (579)
T KOG1125|consen  356 LMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSG  435 (579)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhh
Confidence            33333333222 1122222                                  233333333222111   123567888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHH
Q 024043          118 IAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLL  197 (273)
Q Consensus       118 lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (273)
                      ||.+|...|+|++|+.||+.|+..-..+      ...|+++|-++....+..+||..|++++...++-.       ...+
T Consensus       436 LGVLy~ls~efdraiDcf~~AL~v~Pnd------~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yV-------R~Ry  502 (579)
T KOG1125|consen  436 LGVLYNLSGEFDRAVDCFEAALQVKPND------YLLWNRLGATLANGNRSEEAISAYNRALQLQPGYV-------RVRY  502 (579)
T ss_pred             hHHHHhcchHHHHHHHHHHHHHhcCCch------HHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCee-------eeeh
Confidence            9999999999999999999999774432      46789999999999999999999999986555532       2446


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043          198 NAGICQLCKGDVVAITNALERYQDI  222 (273)
Q Consensus       198 ~~gl~~l~~gd~~~A~~~~~~~~~l  222 (273)
                      ++|+++.-.|.+.+|..+|-....+
T Consensus       503 NlgIS~mNlG~ykEA~~hlL~AL~m  527 (579)
T KOG1125|consen  503 NLGISCMNLGAYKEAVKHLLEALSM  527 (579)
T ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHh
Confidence            7888888888888887777665433

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.64  E-value=1.1e-05  Score=68.73  Aligned_cols=166  Identities=18%  Similarity=0.228  Sum_probs=110.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHH---------------------------
Q 024043           40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA---------------------------   91 (273)
Q Consensus        40 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA---------------------------   91 (273)
                      |.-|-...+.++|++.|...+..      ..+...+..-+|++|+.. ..+.|                           
T Consensus        42 GlNfLLs~Q~dKAvdlF~e~l~~------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~  115 (389)
T COG2956          42 GLNFLLSNQPDKAVDLFLEMLQE------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGR  115 (389)
T ss_pred             HHHHHhhcCcchHHHHHHHHHhc------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence            44555667888898888877652      123334444555555433 33333                           


Q ss_pred             ----HHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc
Q 024043           92 ----ISCLEQAVNMFCDIGR-LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE  166 (273)
Q Consensus        92 ----~~~~~~Al~~~~~~g~-~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g  166 (273)
                          .-.|.+|-++|...-+ +..+-.++..+-.+|....+.++|++..++-+.+-.+. .....+..+..+|..+....
T Consensus       116 Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~-~~~eIAqfyCELAq~~~~~~  194 (389)
T COG2956         116 DYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT-YRVEIAQFYCELAQQALASS  194 (389)
T ss_pred             HHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc-chhHHHHHHHHHHHHHhhhh
Confidence                3345566666665555 55566677777788887777777777766655543332 23566788888888888888


Q ss_pred             CHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043          167 QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY  219 (273)
Q Consensus       167 ~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~  219 (273)
                      +.++|++.+.+++...+.+.      + .-..+|.+.+..||+.+|.+.|+.-
T Consensus       195 ~~d~A~~~l~kAlqa~~~cv------R-Asi~lG~v~~~~g~y~~AV~~~e~v  240 (389)
T COG2956         195 DVDRARELLKKALQADKKCV------R-ASIILGRVELAKGDYQKAVEALERV  240 (389)
T ss_pred             hHHHHHHHHHHHHhhCccce------e-hhhhhhHHHHhccchHHHHHHHHHH
Confidence            99999999999876554442      1 2234688899999999999988874

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.63  E-value=9.8e-07  Score=71.89  Aligned_cols=121  Identities=14%  Similarity=0.144  Sum_probs=97.3

Q ss_pred             cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH-H
Q 024043           46 AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELY-E  123 (273)
Q Consensus        46 ~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~-~  123 (273)
                      .++.++++..+.+++.....      -+..+..+|.+|... ++++|+.+|++|+.+..+..      .++..+|.++ .
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~------~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~------~~~~~lA~aL~~  119 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQ------NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENA------ELYAALATVLYY  119 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHH
Confidence            45667777777777766422      245788899999877 99999999999999886554      4888999875 5


Q ss_pred             hcCC--HHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 024043          124 SEHN--IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN  184 (273)
Q Consensus       124 ~~g~--~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~  184 (273)
                      ..|+  +++|...+++|+......      ..++..+|..+...|+|++|+.+|++++...+.
T Consensus       120 ~~g~~~~~~A~~~l~~al~~dP~~------~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~  176 (198)
T PRK10370        120 QAGQHMTPQTREMIDKALALDANE------VTALMLLASDAFMQADYAQAIELWQKVLDLNSP  176 (198)
T ss_pred             hcCCCCcHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            6677  699999999999986543      367899999999999999999999999765443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.63  E-value=1e-06  Score=78.52  Aligned_cols=164  Identities=15%  Similarity=0.202  Sum_probs=123.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 024043           40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI  118 (273)
Q Consensus        40 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~l  118 (273)
                      |.++-..+++++|+.-|+++..+-      ++-+-.|.+++-+..+. .++++...|+.+..-|+..      ..++.-.
T Consensus       401 gQm~flL~q~e~A~aDF~Kai~L~------pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~------~Evy~~f  468 (606)
T KOG0547|consen  401 GQMRFLLQQYEEAIADFQKAISLD------PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC------PEVYNLF  468 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcC------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------chHHHHH
Confidence            666777788999999999998874      23355666666655555 9999999999998876654      5699999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHhccCC-cccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHH
Q 024043          119 AELYESEHNIEQTIVFFEKAADMFQNEEV-TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLL  197 (273)
Q Consensus       119 g~~~~~~g~~~~A~~~y~~Al~~~~~~~~-~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (273)
                      |+++..++++++|+++|.+|+++-+...- ..+++-...+.-.++...+++.+|+.++++++...+.+..       .+.
T Consensus       469 AeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~-------A~~  541 (606)
T KOG0547|consen  469 AEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQ-------AYE  541 (606)
T ss_pred             HHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHH-------HHH
Confidence            99999999999999999999999776433 2343333333334455678999999999999865444421       345


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043          198 NAGICQLCKGDVVAITNALERYQDI  222 (273)
Q Consensus       198 ~~gl~~l~~gd~~~A~~~~~~~~~l  222 (273)
                      .++-+-+.+|+.++|.+.|++...|
T Consensus       542 tlaq~~lQ~~~i~eAielFEksa~l  566 (606)
T KOG0547|consen  542 TLAQFELQRGKIDEAIELFEKSAQL  566 (606)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            5677778999999999999986533

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.61  E-value=3.3e-06  Score=67.14  Aligned_cols=105  Identities=11%  Similarity=0.202  Sum_probs=79.9

Q ss_pred             HcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 024043           65 KLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ  143 (273)
Q Consensus        65 ~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~  143 (273)
                      ........+..+...|.++... ++++|+.+|++++.+....   ...+.++.++|.++...|++++|+.+|.+|+.+..
T Consensus        27 ~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  103 (172)
T PRK02603         27 PINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP---NDRSYILYNMGIIYASNGEHDKALEYYHQALELNP  103 (172)
T ss_pred             ccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc---chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            3445677788899999999776 9999999999999876532   23467899999999999999999999999999864


Q ss_pred             ccCCcccHHHHHHHHHHHHHHhcC-------HHHHHHHHHHH
Q 024043          144 NEEVTTSANQCKQKVAQYAAELEQ-------YHKSIEIYEEI  178 (273)
Q Consensus       144 ~~~~~~~~~~~~~~~a~~~~~~g~-------y~~A~~~~~~~  178 (273)
                      ..      ...+..+|.++...|+       +++|+..|+++
T Consensus       104 ~~------~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A  139 (172)
T PRK02603        104 KQ------PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKA  139 (172)
T ss_pred             cc------HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHH
Confidence            32      3456667777776655       44454444444

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.61  E-value=2.1e-05  Score=66.17  Aligned_cols=177  Identities=13%  Similarity=0.065  Sum_probs=133.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChh
Q 024043           31 DAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLS  109 (273)
Q Consensus        31 ~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~  109 (273)
                      .+...|..+ ..+...|+|++|++.|++....+.   ....+..+...+|.+|.+. ++++|+..+++.+..++...+  
T Consensus        31 ~~~~~Y~~A-~~~~~~g~y~~Ai~~f~~l~~~yP---~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~--  104 (243)
T PRK10866         31 PPSEIYATA-QQKLQDGNWKQAITQLEALDNRYP---FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN--  104 (243)
T ss_pred             CHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc--
Confidence            455677764 444558999999999999988764   2345556678899999888 999999999999999886654  


Q ss_pred             HHHHHHHHHHHHHHhcC---------------C---HHHHHHHHHHHHHHHhccCCcccH-----------HHHHHHHHH
Q 024043          110 MAARYYKEIAELYESEH---------------N---IEQTIVFFEKAADMFQNEEVTTSA-----------NQCKQKVAQ  160 (273)
Q Consensus       110 ~~a~~l~~lg~~~~~~g---------------~---~~~A~~~y~~Al~~~~~~~~~~~~-----------~~~~~~~a~  160 (273)
                       ...++..+|.++...+               +   ..+|+..+++-++.|+.+.-...+           +.--..+|.
T Consensus       105 -~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~  183 (243)
T PRK10866        105 -IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAE  183 (243)
T ss_pred             -hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             5667888887753332               2   346888999999988865422221           122235667


Q ss_pred             HHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHH
Q 024043          161 YAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER  218 (273)
Q Consensus       161 ~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~  218 (273)
                      .|.+.|.|.-|+.-++.++...++.+    ...+.+..++.++...|..+.|......
T Consensus       184 ~Y~~~~~y~AA~~r~~~v~~~Yp~t~----~~~eal~~l~~ay~~lg~~~~a~~~~~~  237 (243)
T PRK10866        184 YYTKRGAYVAVVNRVEQMLRDYPDTQ----ATRDALPLMENAYRQLQLNAQADKVAKI  237 (243)
T ss_pred             HHHHcCchHHHHHHHHHHHHHCCCCc----hHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            78999999999999999998887764    2556788889999999999888877654

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.57  E-value=1.5e-06  Score=64.03  Aligned_cols=106  Identities=16%  Similarity=0.180  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHH
Q 024043           74 QAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSAN  152 (273)
Q Consensus        74 ~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~  152 (273)
                      ..+...|..+... ++++|++.|.+++..+.   +......++..+|.++...|++++|+.+|++++..+....   ...
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~   76 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYP---KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP---KAP   76 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC---ccc
Confidence            4566777777666 99999999999987643   2233456788899999999999999999999998875332   224


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          153 QCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       153 ~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                      .++..+|.++..+|++++|+.+|++++...+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  109 (119)
T TIGR02795        77 DALLKLGMSLQELGDKEKAKATLQQVIKRYPGS  109 (119)
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence            668999999999999999999999998766654

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.56  E-value=4.9e-07  Score=60.35  Aligned_cols=64  Identities=20%  Similarity=0.367  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Q 024043          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE-QYHKSIEIYEEIARQ  181 (273)
Q Consensus       112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g-~y~~A~~~~~~~~~~  181 (273)
                      |.++..+|.++...|++++|+.+|.+|+++..      ....++.++|.++..+| ++++|++.+++++..
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p------~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP------NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST------THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            56899999999999999999999999999853      33578999999999999 799999999998753

...

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.55  E-value=2.2e-06  Score=63.11  Aligned_cols=101  Identities=14%  Similarity=0.151  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhc
Q 024043          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG  191 (273)
Q Consensus       112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~  191 (273)
                      ++.+..+|..+...|++++|+..|.+++..+...   .....++..+|.++...|+|++|+.+|++++...++.+.    
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~----   74 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKS---TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPK----   74 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCc----
Confidence            3578889999999999999999999999876432   223467889999999999999999999999866554421    


Q ss_pred             hhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043          192 VKGHLLNAGICQLCKGDVVAITNALERY  219 (273)
Q Consensus       192 ~~~~~~~~gl~~l~~gd~~~A~~~~~~~  219 (273)
                      ....++.+|.++...|+...|...+++.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~  102 (119)
T TIGR02795        75 APDALLKLGMSLQELGDKEKAKATLQQV  102 (119)
T ss_pred             ccHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            2345678899999999999999888876

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.54  E-value=1.3e-06  Score=77.41  Aligned_cols=145  Identities=12%  Similarity=0.102  Sum_probs=107.6

Q ss_pred             CCCCHHHHHHHHHHHHH-------------HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHH
Q 024043           25 FGSKYEDAADLFDKAAN-------------SFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNE   90 (273)
Q Consensus        25 ~~~~~~~A~~~~~~a~~-------------~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~e   90 (273)
                      +.+++++|...+.++..             .+...|++..+.....++...  ..+........+...|.++... ++++
T Consensus        55 ~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~  132 (355)
T cd05804          55 IAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDR  132 (355)
T ss_pred             HcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHH
Confidence            34899999999887642             123334444444444444433  2233444556666778888776 9999


Q ss_pred             HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHH
Q 024043           91 AISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHK  170 (273)
Q Consensus        91 A~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~  170 (273)
                      |+..+++++++.+..      +.++..+|.++...|++++|+.+++++++..+..  +.....++..+|.++...|++++
T Consensus       133 A~~~~~~al~~~p~~------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~--~~~~~~~~~~la~~~~~~G~~~~  204 (355)
T cd05804         133 AEEAARRALELNPDD------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS--SMLRGHNWWHLALFYLERGDYEA  204 (355)
T ss_pred             HHHHHHHHHhhCCCC------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC--cchhHHHHHHHHHHHHHCCCHHH
Confidence            999999999986554      4578899999999999999999999999887652  23334567889999999999999


Q ss_pred             HHHHHHHHH
Q 024043          171 SIEIYEEIA  179 (273)
Q Consensus       171 A~~~~~~~~  179 (273)
                      |+..|++++
T Consensus       205 A~~~~~~~~  213 (355)
T cd05804         205 ALAIYDTHI  213 (355)
T ss_pred             HHHHHHHHh
Confidence            999999985

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.54  E-value=9.4e-07  Score=78.54  Aligned_cols=91  Identities=15%  Similarity=0.148  Sum_probs=55.6

Q ss_pred             HhccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHH
Q 024043           83 YKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYA  162 (273)
Q Consensus        83 ~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~  162 (273)
                      +...++++|+++|++|+.+....      +.++.++|.+|..+|++++|+..+++|+.+...      ...++..+|.++
T Consensus        13 ~~~~~~~~Ai~~~~~Al~~~P~~------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~------~~~a~~~lg~~~   80 (356)
T PLN03088         13 FVDDDFALAVDLYTQAIDLDPNN------AELYADRAQANIKLGNFTEAVADANKAIELDPS------LAKAYLRKGTAC   80 (356)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC------CHHHHHHHHHHH
Confidence            33346666666666666654322      345666667776667777777777777666432      134566667777


Q ss_pred             HHhcCHHHHHHHHHHHHHHHhcc
Q 024043          163 AELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       163 ~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                      ..+|+|++|+..|++++...+++
T Consensus        81 ~~lg~~~eA~~~~~~al~l~P~~  103 (356)
T PLN03088         81 MKLEEYQTAKAALEKGASLAPGD  103 (356)
T ss_pred             HHhCCHHHHHHHHHHHHHhCCCC
Confidence            77777777777777666544443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.53  E-value=1e-06  Score=66.83  Aligned_cols=101  Identities=13%  Similarity=0.057  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccH
Q 024043           73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSA  151 (273)
Q Consensus        73 a~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~  151 (273)
                      .......|.++... ++++|++++++++.+....      ...+..+|.++...|++++|+.++++++.+...      .
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~------~   84 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN------SRYWLGLAACCQMLKEYEEAIDAYALAAALDPD------D   84 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------C
Confidence            45677788888766 9999999999998865432      468899999999999999999999999988533      2


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       152 ~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                      ...+..+|.++...|++++|+..|++++...+++
T Consensus        85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  118 (135)
T TIGR02552        85 PRPYFHAAECLLALGEPESALKALDLAIEICGEN  118 (135)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence            4668889999999999999999999997655544

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.53  E-value=1.2e-06  Score=61.06  Aligned_cols=81  Identities=19%  Similarity=0.260  Sum_probs=62.5

Q ss_pred             CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc
Q 024043           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE  166 (273)
Q Consensus        87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g  166 (273)
                      ++++|+.++++.++....  ++  ....+..+|.++...|+|++|+..+++ ..+-.      ....+...+|.++.++|
T Consensus         4 ~y~~Ai~~~~k~~~~~~~--~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~------~~~~~~~l~a~~~~~l~   72 (84)
T PF12895_consen    4 NYENAIKYYEKLLELDPT--NP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP------SNPDIHYLLARCLLKLG   72 (84)
T ss_dssp             -HHHHHHHHHHHHHHHCG--TH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH------CHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHHCCC--Ch--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC------CCHHHHHHHHHHHHHhC
Confidence            688999999999887764  22  455777899999999999999999988 33332      12455667799999999


Q ss_pred             CHHHHHHHHHHH
Q 024043          167 QYHKSIEIYEEI  178 (273)
Q Consensus       167 ~y~~A~~~~~~~  178 (273)
                      +|++|+++|+++
T Consensus        73 ~y~eAi~~l~~~   84 (84)
T PF12895_consen   73 KYEEAIKALEKA   84 (84)
T ss_dssp             -HHHHHHHHHHH
T ss_pred             CHHHHHHHHhcC
Confidence            999999999874

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.52  E-value=5.3e-06  Score=64.13  Aligned_cols=97  Identities=12%  Similarity=0.088  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHH
Q 024043           74 QAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ  153 (273)
Q Consensus        74 ~~~~~~~~~~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~  153 (273)
                      ..|.-+...|...++++|...|+-...+-...      +..+.++|.++..+|++.+|+..|.+|+.+-...      +.
T Consensus        37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~------~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd------p~  104 (157)
T PRK15363         37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS------FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA------PQ  104 (157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC------ch
Confidence            34444444455559999999999887765433      4589999999999999999999999999886532      35


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 024043          154 CKQKVAQYAAELEQYHKSIEIYEEIARQS  182 (273)
Q Consensus       154 ~~~~~a~~~~~~g~y~~A~~~~~~~~~~~  182 (273)
                      .+.+.|.++...|+.+.|.+.|+.++..+
T Consensus       105 ~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        105 APWAAAECYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            68899999999999999999999998665

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.52  E-value=6.1e-07  Score=81.23  Aligned_cols=123  Identities=12%  Similarity=0.075  Sum_probs=87.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 024043           39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKE  117 (273)
Q Consensus        39 a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~  117 (273)
                      +|.+|...|+|++|++||+.|+..-..      -...++++|-..-.. +..+||+.|++|+++.+.-=      ++..|
T Consensus       436 LGVLy~ls~efdraiDcf~~AL~v~Pn------d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yV------R~RyN  503 (579)
T KOG1125|consen  436 LGVLYNLSGEFDRAVDCFEAALQVKPN------DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYV------RVRYN  503 (579)
T ss_pred             hHHHHhcchHHHHHHHHHHHHHhcCCc------hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCee------eeehh
Confidence            467888888999999999888866321      235778888888777 88899999999988876443      37888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccH----HHHHHHHHHHHHHhcCHHHHHH
Q 024043          118 IAELYESEHNIEQTIVFFEKAADMFQNEEVTTSA----NQCKQKVAQYAAELEQYHKSIE  173 (273)
Q Consensus       118 lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~----~~~~~~~a~~~~~~g~y~~A~~  173 (273)
                      ||..+..+|.|++|+.+|-.||.+.+........    ..+|..+=.++..+++.+-+.+
T Consensus       504 lgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~  563 (579)
T KOG1125|consen  504 LGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE  563 (579)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence            8888888899999999999999888774322221    2344444445555555554444

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.49  E-value=1.8e-06  Score=65.52  Aligned_cols=97  Identities=15%  Similarity=0.182  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhc
Q 024043          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG  191 (273)
Q Consensus       112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~  191 (273)
                      ......+|..+...|++++|+.++++++.+...      ...++..+|.++...|++++|+.+|++++...+.+      
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------   84 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY------NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD------   84 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC------
Confidence            456888999999999999999999999887532      24678999999999999999999999987644332      


Q ss_pred             hhhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 024043          192 VKGHLLNAGICQLCKGDVVAITNALERYQD  221 (273)
Q Consensus       192 ~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~  221 (273)
                       ...++.+|.++...|++.+|...++....
T Consensus        85 -~~~~~~la~~~~~~g~~~~A~~~~~~al~  113 (135)
T TIGR02552        85 -PRPYFHAAECLLALGEPESALKALDLAIE  113 (135)
T ss_pred             -hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence             23567789999999999999998887643

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.49  E-value=8.1e-07  Score=61.36  Aligned_cols=93  Identities=22%  Similarity=0.304  Sum_probs=73.6

Q ss_pred             HHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHH
Q 024043           75 AYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ  153 (273)
Q Consensus        75 ~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~  153 (273)
                      ++..+|.++... ++++|+..+++++.......      .++..+|.++...+++++|+.++++++.+.....      .
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~   69 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA------DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA------K   69 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch------h
Confidence            355667776655 88889999888887654332      5788899999998999999999999988764332      5


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043          154 CKQKVAQYAAELEQYHKSIEIYEEIA  179 (273)
Q Consensus       154 ~~~~~a~~~~~~g~y~~A~~~~~~~~  179 (273)
                      ++..+|.++...|++++|..++.++.
T Consensus        70 ~~~~~~~~~~~~~~~~~a~~~~~~~~   95 (100)
T cd00189          70 AYYNLGLAYYKLGKYEEALEAYEKAL   95 (100)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            68889999999999999999988875

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.46  E-value=6.1e-05  Score=61.58  Aligned_cols=171  Identities=18%  Similarity=0.169  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhH
Q 024043           32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM  110 (273)
Q Consensus        32 A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~  110 (273)
                      +-.+|.. |..+...|+|.+|+..|.+....+...   ..+..+...+|.++... ++++|+..+++-+..|+....   
T Consensus         5 ~~~lY~~-a~~~~~~g~y~~Ai~~f~~l~~~~P~s---~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~---   77 (203)
T PF13525_consen    5 AEALYQK-ALEALQQGDYEEAIKLFEKLIDRYPNS---PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK---   77 (203)
T ss_dssp             HHHHHHH-HHHHHHCT-HHHHHHHHHHHHHH-TTS---TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT---
T ss_pred             HHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHCCCC---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc---
Confidence            3445555 566666889999999999888776433   33455667888888777 999999999999998876543   


Q ss_pred             HHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHHHhccCCcccH-----------HHHHHHHHHHHHHhcCH
Q 024043          111 AARYYKEIAELYESE-----------HNIEQTIVFFEKAADMFQNEEVTTSA-----------NQCKQKVAQYAAELEQY  168 (273)
Q Consensus       111 ~a~~l~~lg~~~~~~-----------g~~~~A~~~y~~Al~~~~~~~~~~~~-----------~~~~~~~a~~~~~~g~y  168 (273)
                      ...++..+|.++...           +...+|+..++.-+..|+.+.-...+           +.--..+|..|.+.|.|
T Consensus        78 ~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y  157 (203)
T PF13525_consen   78 ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKY  157 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-H
T ss_pred             hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence            456677777765443           33568899999999888876532222           12234456788899999


Q ss_pred             HHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHH
Q 024043          169 HKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAIT  213 (273)
Q Consensus       169 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~  213 (273)
                      .-|+..|+.++...++.+    ...+.+..++.++...|+...+.
T Consensus       158 ~aA~~r~~~v~~~yp~t~----~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  158 KAAIIRFQYVIENYPDTP----AAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHHHHHHHHHHHSTTSH----HHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHHHHHHCCCCc----hHHHHHHHHHHHHHHhCChHHHH
Confidence            999999999998877764    24457778888999999876443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.45  E-value=1.1e-05  Score=67.97  Aligned_cols=105  Identities=18%  Similarity=0.203  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCc
Q 024043           70 HEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT  148 (273)
Q Consensus        70 ~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~  148 (273)
                      ...|..+-.=|+-.-+. +|.+|+..|.+|+++-...      |..|.+-+.+|.++|.|+.|++-++.|+.+-.     
T Consensus        78 ~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n------AVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp-----  146 (304)
T KOG0553|consen   78 KALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTN------AVYYCNRAAAYSKLGEYEDAVKDCESALSIDP-----  146 (304)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc------chHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-----
Confidence            44555666666655444 9999999999999986544      56888999999999999999999999998843     


Q ss_pred             ccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccc
Q 024043          149 TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNN  186 (273)
Q Consensus       149 ~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~  186 (273)
                       .-..+|.++|.+|..+|+|.+|++.|++++...+.+.
T Consensus       147 -~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne  183 (304)
T KOG0553|consen  147 -HYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE  183 (304)
T ss_pred             -HHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence             3457899999999999999999999999987766653

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.45  E-value=2.3e-06  Score=58.98  Aligned_cols=93  Identities=18%  Similarity=0.276  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchh
Q 024043          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK  193 (273)
Q Consensus       114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~  193 (273)
                      ++.++|.++...|++++|+..+++++......      ..++..+|.++...|++++|+++|++++...+.++       
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------   68 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN------ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA-------   68 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch-------
Confidence            57788999999999999999999999875432      26788999999999999999999999875443331       


Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043          194 GHLLNAGICQLCKGDVVAITNALERY  219 (273)
Q Consensus       194 ~~~~~~gl~~l~~gd~~~A~~~~~~~  219 (273)
                      ..+..++.++...|++..|...+...
T Consensus        69 ~~~~~~~~~~~~~~~~~~a~~~~~~~   94 (100)
T cd00189          69 KAYYNLGLAYYKLGKYEEALEAYEKA   94 (100)
T ss_pred             hHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            35677888999999998888887764

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.43  E-value=1.4e-05  Score=59.45  Aligned_cols=115  Identities=14%  Similarity=0.183  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhch
Q 024043          113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGV  192 (273)
Q Consensus       113 ~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~  192 (273)
                      +++.++|.++...|++++|+.+|++|++.  ... ......++..+|..+..+|++++|+.++++.+...++++.   ..
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~--gL~-~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~---~~   75 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAA--GLS-GADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDEL---NA   75 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc---cH
Confidence            46778889999999999999999999874  221 1233568889999999999999999999988765554321   11


Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCHhHHHHHHHhh
Q 024043          193 KGHLLNAGICQLCKGDVVAITNALERYQDIAASMDEEDIAKFTDVVKEF  241 (273)
Q Consensus       193 ~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~a~~~~d~~~~~~~~~~~  241 (273)
                      . ...-..++....|+..+|...+-..      + ..+...++.++.-|
T Consensus        76 ~-l~~f~Al~L~~~gr~~eAl~~~l~~------l-a~~~~~y~ra~~~y  116 (120)
T PF12688_consen   76 A-LRVFLALALYNLGRPKEALEWLLEA------L-AETLPRYRRAIRFY  116 (120)
T ss_pred             H-HHHHHHHHHHHCCCHHHHHHHHHHH------H-HHHHHHHHHHHHHH
Confidence            1 1122345666778777665554332      1 12233566666554

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.42  E-value=2.8e-06  Score=59.09  Aligned_cols=83  Identities=19%  Similarity=0.243  Sum_probs=63.3

Q ss_pred             cCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHH
Q 024043          125 EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQL  204 (273)
Q Consensus       125 ~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l  204 (273)
                      .|+|++|+.+|++.++.....  +  ....+..+|.++..+|+|++|++++++ ......       ........|.|++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~--~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-------~~~~~~l~a~~~~   69 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTN--P--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-------NPDIHYLLARCLL   69 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGT--H--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-------HHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCC--h--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-------CHHHHHHHHHHHH
Confidence            489999999999999987652  1  345778899999999999999999988 322222       1223345599999


Q ss_pred             hcCCHHHHHHHHHHH
Q 024043          205 CKGDVVAITNALERY  219 (273)
Q Consensus       205 ~~gd~~~A~~~~~~~  219 (273)
                      .+|++++|..+++++
T Consensus        70 ~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   70 KLGKYEEAIKALEKA   84 (84)
T ss_dssp             HTT-HHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHhcC
Confidence            999999999999875

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.42  E-value=6.3e-05  Score=63.27  Aligned_cols=161  Identities=11%  Similarity=0.084  Sum_probs=122.9

Q ss_pred             hHHHHHHHHHHhhccccCCCCCHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCH
Q 024043            7 RAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKA-----------------ANSFKLAKSWDKAGATYVKLANCHLKLESK   69 (273)
Q Consensus         7 ~a~~l~~~Aek~~k~~~~~~~~~~~A~~~~~~a-----------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~   69 (273)
                      .+++++.+|.+.+.     .|+|++|.+.|+.+                 |.+|...+++++|+..|++.+..+....+ 
T Consensus        31 ~~~~~Y~~A~~~~~-----~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~-  104 (243)
T PRK10866         31 PPSEIYATAQQKLQ-----DGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-  104 (243)
T ss_pred             CHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc-
Confidence            67788888888776     34788888888764                 56788899999999999999988865543 


Q ss_pred             HHHHHHHHHHHHHHhcc----------------C---HHHHHHHHHHHHHHHHhcCChhH-----------HHHHHHHHH
Q 024043           70 HEAAQAYVDAAHCYKKT----------------S---SNEAISCLEQAVNMFCDIGRLSM-----------AARYYKEIA  119 (273)
Q Consensus        70 ~~aa~~~~~~~~~~~~~----------------~---~~eA~~~~~~Al~~~~~~g~~~~-----------~a~~l~~lg  119 (273)
                        +..++...|.++...                |   ..+|+..+++-+..|+...-...           .|.--..+|
T Consensus       105 --~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia  182 (243)
T PRK10866        105 --IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVA  182 (243)
T ss_pred             --hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence              456666777663111                2   24677888888888875533222           244455788


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 024043          120 ELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI  178 (273)
Q Consensus       120 ~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~  178 (273)
                      ..|.+.|.|..|+..++..++-|+...   ...+++..++..|..+|..++|.......
T Consensus       183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~---~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        183 EYYTKRGAYVAVVNRVEQMLRDYPDTQ---ATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             HHHHHcCchHHHHHHHHHHHHHCCCCc---hHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            889999999999999999999998765   45678999999999999999998876544

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.42  E-value=5.6e-06  Score=70.29  Aligned_cols=106  Identities=13%  Similarity=0.200  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHH
Q 024043           74 QAYVDAAHCYK-KTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSAN  152 (273)
Q Consensus        74 ~~~~~~~~~~~-~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~  152 (273)
                      ..|..+..... ..++++|+..|++.+..|+...   ....++..+|.+|...|++++|+..|++.+..|....   ...
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~---~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~---~~~  217 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST---YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP---KAA  217 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc---chh
Confidence            34444444434 3499999999999999987543   4556889999999999999999999999999998653   456


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          153 QCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       153 ~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                      .++.++|.++..+|++++|+..|++++...+++
T Consensus       218 dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s  250 (263)
T PRK10803        218 DAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT  250 (263)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            889999999999999999999999998877765

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.41  E-value=1.1e-05  Score=78.76  Aligned_cols=136  Identities=12%  Similarity=0.022  Sum_probs=100.4

Q ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcC
Q 024043           28 KYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIG  106 (273)
Q Consensus        28 ~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g  106 (273)
                      ....+-..|.+ +.+....|+++.|++.|.++++.....     ...++ .+..++... +.++|+.++++++  -..  
T Consensus        30 ~p~~~~~~y~~-aii~~r~Gd~~~Al~~L~qaL~~~P~~-----~~av~-dll~l~~~~G~~~~A~~~~eka~--~p~--   98 (822)
T PRK14574         30 NPAMADTQYDS-LIIRARAGDTAPVLDYLQEESKAGPLQ-----SGQVD-DWLQIAGWAGRDQEVIDVYERYQ--SSM--   98 (822)
T ss_pred             CccchhHHHHH-HHHHHhCCCHHHHHHHHHHHHhhCccc-----hhhHH-HHHHHHHHcCCcHHHHHHHHHhc--cCC--
Confidence            44444444544 677778999999999999998775322     11222 566666555 8999999999998  111  


Q ss_pred             ChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 024043          107 RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS  182 (273)
Q Consensus       107 ~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~  182 (273)
                        ......+..+|.++...|++++|++.|+++++.....      ..++..++.++...+++++|++.++++....
T Consensus        99 --n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d  166 (822)
T PRK14574         99 --NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTN------PDLISGMIMTQADAGRGGVVLKQATELAERD  166 (822)
T ss_pred             --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHhhcCCHHHHHHHHHHhcccC
Confidence              2223456666889999999999999999999887544      3556677899999999999999999986543

>PLN02789 farnesyltranstransferase

Probab=98.40  E-value=0.00013  Score=63.79  Aligned_cols=197  Identities=8%  Similarity=-0.046  Sum_probs=111.5

Q ss_pred             HHHHHcC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-C--HHHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 024043           41 NSFKLAK-SWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-S--SNEAISCLEQAVNMFCDIGRLSMAARYYK  116 (273)
Q Consensus        41 ~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~--~~eA~~~~~~Al~~~~~~g~~~~~a~~l~  116 (273)
                      .++...| +++++++++.+++....+.-      .++...+.++... +  .+++++++.+++++-.++-      .++.
T Consensus        79 ~iL~~L~~~l~eeL~~~~~~i~~npkny------qaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy------~AW~  146 (320)
T PLN02789         79 LCLEALDADLEEELDFAEDVAEDNPKNY------QIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNY------HAWS  146 (320)
T ss_pred             HHHHHcchhHHHHHHHHHHHHHHCCcch------HHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccH------HHHH
Confidence            3444445 45667776666665532211      1233334444333 2  2566777777776655443      3788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHh---cCH----HHHHHHHHHHHHHHhccchhh
Q 024043          117 EIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL---EQY----HKSIEIYEEIARQSLNNNLLK  189 (273)
Q Consensus       117 ~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~---g~y----~~A~~~~~~~~~~~~~~~~~~  189 (273)
                      ..+.++...|+++++++++.+++++-...      ..++...+.+...+   |.+    ++++++..+++...+.+..  
T Consensus       147 ~R~w~l~~l~~~~eeL~~~~~~I~~d~~N------~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~S--  218 (320)
T PLN02789        147 HRQWVLRTLGGWEDELEYCHQLLEEDVRN------NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNES--  218 (320)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHCCCc------hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcC--
Confidence            88888888888888888888888774332      34566677666554   333    4677777777766665531  


Q ss_pred             hchhhHHHHHHHHHHh----cCCHHHHHHHHHHHH-----------HHHHHHhhcC----------------HhHHHHHH
Q 024043          190 YGVKGHLLNAGICQLC----KGDVVAITNALERYQ-----------DIAASMDEED----------------IAKFTDVV  238 (273)
Q Consensus       190 ~~~~~~~~~~gl~~l~----~gd~~~A~~~~~~~~-----------~ll~a~~~~d----------------~~~~~~~~  238 (273)
                           .+...+-++..    .+...++...+.+..           -|++-+..+.                ......++
T Consensus       219 -----aW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  293 (320)
T PLN02789        219 -----PWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQ  293 (320)
T ss_pred             -----HHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHH
Confidence                 22333323222    122334555444432           1333333221                11345677


Q ss_pred             HhhhccCCCchhHHHHHHHHHHhc
Q 024043          239 KEFDSMTPLDPWKTTLLLRVKEKL  262 (273)
Q Consensus       239 ~~~~~~~~ld~~~~~~l~~~~~~~  262 (273)
                      .-|+.+...||....-+.-.+..|
T Consensus       294 ~~~~~l~~~d~ir~~yw~~~~~~~  317 (320)
T PLN02789        294 AVCSELEVADPMRRNYWAWRKSKL  317 (320)
T ss_pred             HHHHHHHhhCcHHHHHHHHHHHhh
Confidence            777777788888888777666655

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.39  E-value=1.4e-05  Score=59.40  Aligned_cols=100  Identities=16%  Similarity=0.156  Sum_probs=77.6

Q ss_pred             HHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHH
Q 024043           75 AYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ  153 (273)
Q Consensus        75 ~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~  153 (273)
                      +..+.+.++... ++++|+.+|++|+..-  . +.....+++..+|..+..+|++++|+..+++++.-++....   ...
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g--L-~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~---~~~   76 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAG--L-SGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDEL---NAA   76 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc---cHH
Confidence            456677777666 9999999999998731  1 23345678999999999999999999999999987654332   223


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 024043          154 CKQKVAQYAAELEQYHKSIEIYEEIAR  180 (273)
Q Consensus       154 ~~~~~a~~~~~~g~y~~A~~~~~~~~~  180 (273)
                      ...-++.++...|++++|++.+-.++.
T Consensus        77 l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   77 LRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            345577889999999999999887753

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.38  E-value=1.5e-05  Score=77.47  Aligned_cols=62  Identities=26%  Similarity=0.290  Sum_probs=32.8

Q ss_pred             HHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 024043           75 AYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ  143 (273)
Q Consensus        75 ~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~  143 (273)
                      ++..+|.||.++ ++++|...|++++.+-.      .-+.+++++|-.|... +.++|.+++.+|+..+-
T Consensus       118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~------~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i  180 (906)
T PRK14720        118 ALRTLAEAYAKLNENKKLKGVWERLVKADR------DNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI  180 (906)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCc------ccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence            455555555554 55555555555555442      2234555555555555 55555555555555543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.37  E-value=6.9e-06  Score=67.93  Aligned_cols=155  Identities=12%  Similarity=0.032  Sum_probs=114.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 024043           39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK-TSSNEAISCLEQAVNMFCDIGRLSMAARYYKE  117 (273)
Q Consensus        39 a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~-~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~  117 (273)
                      ..+.+...|+-+.+..+..+++..+.+..      ..+...|..... .++.+|+..++++..+-+..+      +.++.
T Consensus        72 ~a~a~~~~G~a~~~l~~~~~~~~~~~~d~------~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~------~~~~~  139 (257)
T COG5010          72 LATALYLRGDADSSLAVLQKSAIAYPKDR------ELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDW------EAWNL  139 (257)
T ss_pred             HHHHHHhcccccchHHHHhhhhccCcccH------HHHHHHHHHHHHhcchHHHHHHHHHHhccCCCCh------hhhhH
Confidence            45556666777766666666554432211      122224444433 399999999999998876655      49999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHH
Q 024043          118 IAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLL  197 (273)
Q Consensus       118 lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (273)
                      +|-+|.+.|+.++|-.-|.+|++++...      ..+..++|..+.-.|+++.|..++.++......++       ....
T Consensus       140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~------p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~-------~v~~  206 (257)
T COG5010         140 LGAALDQLGRFDEARRAYRQALELAPNE------PSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADS-------RVRQ  206 (257)
T ss_pred             HHHHHHHccChhHHHHHHHHHHHhccCC------chhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCch-------HHHH
Confidence            9999999999999999999999998654      36788999999999999999999999854333222       2345


Q ss_pred             HHHHHHHhcCCHHHHHHHHHH
Q 024043          198 NAGICQLCKGDVVAITNALER  218 (273)
Q Consensus       198 ~~gl~~l~~gd~~~A~~~~~~  218 (273)
                      ++.++.-..||+..|+.....
T Consensus       207 NLAl~~~~~g~~~~A~~i~~~  227 (257)
T COG5010         207 NLALVVGLQGDFREAEDIAVQ  227 (257)
T ss_pred             HHHHHHhhcCChHHHHhhccc
Confidence            777888889999988876554

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.37  E-value=8.6e-05  Score=60.71  Aligned_cols=155  Identities=21%  Similarity=0.250  Sum_probs=112.6

Q ss_pred             hhHHHHHHHHHHhhccccCCCCCHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 024043            6 ARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKA-----------------ANSFKLAKSWDKAGATYVKLANCHLKLES   68 (273)
Q Consensus         6 ~~a~~l~~~Aek~~k~~~~~~~~~~~A~~~~~~a-----------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~   68 (273)
                      .++..++.+|...+.     .|+|.+|+..|...                 |.++...|+|++|+..|.+-+..+.....
T Consensus         3 ~~~~~lY~~a~~~~~-----~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~   77 (203)
T PF13525_consen    3 DTAEALYQKALEALQ-----QGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK   77 (203)
T ss_dssp             --HHHHHHHHHHHHH-----CT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT
T ss_pred             CCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence            367888899988887     34777777777754                 67888999999999999999988765543


Q ss_pred             HHHHHHHHHHHHHHHhcc------------CHHHHHHHHHHHHHHHHhcCChhHH-----------HHHHHHHHHHHHhc
Q 024043           69 KHEAAQAYVDAAHCYKKT------------SSNEAISCLEQAVNMFCDIGRLSMA-----------ARYYKEIAELYESE  125 (273)
Q Consensus        69 ~~~aa~~~~~~~~~~~~~------------~~~eA~~~~~~Al~~~~~~g~~~~~-----------a~~l~~lg~~~~~~  125 (273)
                         ...++...|.++...            ...+|+..|+..+..|+...-...+           |.--..+|..|...
T Consensus        78 ---~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~  154 (203)
T PF13525_consen   78 ---ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKR  154 (203)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             ---hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence               344555566654322            3468999999999888776554433           44455788999999


Q ss_pred             CCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHH
Q 024043          126 HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS  171 (273)
Q Consensus       126 g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A  171 (273)
                      |.|..|+..++..++-|....   ....++..++..+.++|..+.|
T Consensus       155 ~~y~aA~~r~~~v~~~yp~t~---~~~~al~~l~~~y~~l~~~~~a  197 (203)
T PF13525_consen  155 GKYKAAIIRFQYVIENYPDTP---AAEEALARLAEAYYKLGLKQAA  197 (203)
T ss_dssp             T-HHHHHHHHHHHHHHSTTSH---HHHHHHHHHHHHHHHTT-HHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCCc---hHHHHHHHHHHHHHHhCChHHH
Confidence            999999999999999998764   4567899999999999988744

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.36  E-value=7.2e-07  Score=59.51  Aligned_cols=64  Identities=27%  Similarity=0.334  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHH
Q 024043           73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH-NIEQTIVFFEKAADMF  142 (273)
Q Consensus        73 a~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g-~~~~A~~~y~~Al~~~  142 (273)
                      +..+.+.|.++... ++++|+.+|.+|+++...      -+.++.++|.++..+| ++++|+.++++|+++.
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~------~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~   68 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN------NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD   68 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT------HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence            56788888888777 999999999999987432      2458999999999999 7999999999998864

...

>PLN02789 farnesyltranstransferase

Probab=98.36  E-value=8.6e-05  Score=64.94  Aligned_cols=140  Identities=10%  Similarity=0.093  Sum_probs=111.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHH
Q 024043           25 FGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT--SSNEAISCLEQAVNMF  102 (273)
Q Consensus        25 ~~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~--~~~eA~~~~~~Al~~~  102 (273)
                      ++++|.+|..+|..+   +...+.+++|+..+.+++.+...      -..++...+.++...  ++++++.++.+++...
T Consensus        32 y~~~~~~a~~~~ra~---l~~~e~serAL~lt~~aI~lnP~------~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n  102 (320)
T PLN02789         32 YTPEFREAMDYFRAV---YASDERSPRALDLTADVIRLNPG------NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN  102 (320)
T ss_pred             eCHHHHHHHHHHHHH---HHcCCCCHHHHHHHHHHHHHCch------hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC
Confidence            457899999888765   56688999999999999987432      234555667777666  6899999999999886


Q ss_pred             HhcCChhHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 024043          103 CDIGRLSMAARYYKEIAELYESEHNI--EQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR  180 (273)
Q Consensus       103 ~~~g~~~~~a~~l~~lg~~~~~~g~~--~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~  180 (273)
                      .+.-.      ++...+.++...|+.  ++++.++.+++++....      ..++...+.++..+|+|++|++++.+++.
T Consensus       103 pknyq------aW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN------y~AW~~R~w~l~~l~~~~eeL~~~~~~I~  170 (320)
T PLN02789        103 PKNYQ------IWHHRRWLAEKLGPDAANKELEFTRKILSLDAKN------YHAWSHRQWVLRTLGGWEDELEYCHQLLE  170 (320)
T ss_pred             CcchH------HhHHHHHHHHHcCchhhHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            65543      788888888888864  78899999999775432      47899999999999999999999999987


Q ss_pred             HHhcc
Q 024043          181 QSLNN  185 (273)
Q Consensus       181 ~~~~~  185 (273)
                      ..+.+
T Consensus       171 ~d~~N  175 (320)
T PLN02789        171 EDVRN  175 (320)
T ss_pred             HCCCc
Confidence            66555

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=98.34  E-value=0.00068  Score=57.57  Aligned_cols=207  Identities=12%  Similarity=0.064  Sum_probs=124.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHHh
Q 024043           27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT--SSNEAISCLEQAVNMFCD  104 (273)
Q Consensus        27 ~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~--~~~eA~~~~~~Al~~~~~  104 (273)
                      .+|++|+++....+..+-..|++..|.+.-.-.++++.+.+.+.... ...++..+....  .-.+-.++..+|+.-...
T Consensus         4 kky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~-~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~   82 (260)
T PF04190_consen    4 KKYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEE-SIARLIELISLFPPEEPERKKFIKAAIKWSKF   82 (260)
T ss_dssp             T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHH-HHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCCCcchHHHHHHHHHHHHcc
Confidence            57889999999988999999999988888888888888766443332 234566666554  222355556666666645


Q ss_pred             cCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 024043          105 IGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN  184 (273)
Q Consensus       105 ~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~  184 (273)
                      .+.+.+-......+|..+.+.|++.+|..++-..       +++..  .+...+-......|...+              
T Consensus        83 ~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-------~~~~~--~~~~~ll~~~~~~~~~~e--------------  139 (260)
T PF04190_consen   83 GSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG-------TDPSA--FAYVMLLEEWSTKGYPSE--------------  139 (260)
T ss_dssp             SS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS--------HHHH--HHHHHHHHHHHHHTSS----------------
T ss_pred             CCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc-------CChhH--HHHHHHHHHHHHhcCCcc--------------
Confidence            5566677778888888888777777776666321       00000  000000000011111111              


Q ss_pred             cchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH----------------------------HHHHHHhhcCHhHHHH
Q 024043          185 NNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ----------------------------DIAASMDEEDIAKFTD  236 (273)
Q Consensus       185 ~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~----------------------------~ll~a~~~~d~~~~~~  236 (273)
                             .--...++++.+++.++...|...++.|.                            =|+.+++.++.+.|+.
T Consensus       140 -------~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~  212 (260)
T PF04190_consen  140 -------ADLFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKK  212 (260)
T ss_dssp             -------HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHH
T ss_pred             -------hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHH
Confidence                   11234456677777777777777766655                            2566888999999999


Q ss_pred             HHHhhhccCCCchhHHHHHHHHHHhccc
Q 024043          237 VVKEFDSMTPLDPWKTTLLLRVKEKLKA  264 (273)
Q Consensus       237 ~~~~~~~~~~ld~~~~~~l~~~~~~~~~  264 (273)
                      ....|.....=||-..+.|.+|.+..-+
T Consensus       213 L~~~Y~~~L~rd~~~~~~L~~IG~~yFg  240 (260)
T PF04190_consen  213 LCEKYKPSLKRDPSFKEYLDKIGQLYFG  240 (260)
T ss_dssp             HHHHTHH---HHHHTHHHHHHHHHHHH-
T ss_pred             HHHHhCccccccHHHHHHHHHHHHHHCC
Confidence            9999998766688788899999997665

; PDB: 3LKU_E 2WPV_G.

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.34  E-value=6e-05  Score=71.77  Aligned_cols=172  Identities=13%  Similarity=0.133  Sum_probs=127.4

Q ss_pred             CHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc
Q 024043           28 KYED-AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI  105 (273)
Q Consensus        28 ~~~~-A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~  105 (273)
                      .... ...++.+|-.+|.. |++++|...+...+..-..      ...+|..+|.||... +.+++..+.-.|..+-+..
T Consensus       134 ~l~~~l~~ll~eAN~lfar-g~~eeA~~i~~EvIkqdp~------~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d  206 (895)
T KOG2076|consen  134 KLAPELRQLLGEANNLFAR-GDLEEAEEILMEVIKQDPR------NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKD  206 (895)
T ss_pred             ccCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCcc------chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence            4444 45666665555555 9999999999988876432      346799999999887 9999999999888775543


Q ss_pred             CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          106 GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       106 g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                      -      ..|..++....++|++++|.-||.+|+..-...      -......+.++.++|++..|.+.|.++....+..
T Consensus       207 ~------e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n------~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~  274 (895)
T KOG2076|consen  207 Y------ELWKRLADLSEQLGNINQARYCYSRAIQANPSN------WELIYERSSLYQKTGDLKRAMETFLQLLQLDPPV  274 (895)
T ss_pred             h------HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcc------hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCch
Confidence            3      489999999999999999999999999886543      2456778899999999999999999997544421


Q ss_pred             chhhhchhhH-HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 024043          186 NLLKYGVKGH-LLNAGICQLCKGDVVAITNALERYQD  221 (273)
Q Consensus       186 ~~~~~~~~~~-~~~~gl~~l~~gd~~~A~~~~~~~~~  221 (273)
                         .+.-... ..+....+...++.+.|.+.++.+..
T Consensus       275 ---d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s  308 (895)
T KOG2076|consen  275 ---DIERIEDLIRRVAHYFITHNERERAAKALEGALS  308 (895)
T ss_pred             ---hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence               1111111 12224455667777888888887643

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.33  E-value=2.4e-06  Score=56.23  Aligned_cols=63  Identities=14%  Similarity=0.207  Sum_probs=53.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          117 EIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       117 ~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                      .+|..+...|++++|+..|+++++...      ....++..+|.++..+|++++|+..|++++...+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDP------DNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCST------THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            568889999999999999999998873      346889999999999999999999999998766554

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.33  E-value=4.3e-05  Score=74.65  Aligned_cols=165  Identities=8%  Similarity=-0.014  Sum_probs=115.3

Q ss_pred             CCHHHHHHHHHHHH--------------HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHH
Q 024043           27 SKYEDAADLFDKAA--------------NSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA   91 (273)
Q Consensus        27 ~~~~~A~~~~~~a~--------------~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA   91 (273)
                      |+++.|.+.|.++.              .++...|++++|+.+++++.   ...   ......+..+|.+|... ++++|
T Consensus        48 Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~---~p~---n~~~~~llalA~ly~~~gdyd~A  121 (822)
T PRK14574         48 GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ---SSM---NISSRGLASAARAYRNEKRWDQA  121 (822)
T ss_pred             CCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc---cCC---CCCHHHHHHHHHHHHHcCCHHHH
Confidence            78888888888752              56677899999999999988   111   11234444557788776 99999


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHH
Q 024043           92 ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS  171 (273)
Q Consensus        92 ~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A  171 (273)
                      ++.|+++++..+...      .++..++.++...+++++|++.+++++.....       ...+..++.++...+++.+|
T Consensus       122 iely~kaL~~dP~n~------~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~-------~~~~l~layL~~~~~~~~~A  188 (822)
T PRK14574        122 LALWQSSLKKDPTNP------DLISGMIMTQADAGRGGVVLKQATELAERDPT-------VQNYMTLSYLNRATDRNYDA  188 (822)
T ss_pred             HHHHHHHHhhCCCCH------HHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc-------hHHHHHHHHHHHhcchHHHH
Confidence            999999998776553      35667789999999999999999998877543       12234445666667888889


Q ss_pred             HHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHH
Q 024043          172 IEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALE  217 (273)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~  217 (273)
                      ++.|++++...+++..       ++.....+....|-...|.+...
T Consensus       189 L~~~ekll~~~P~n~e-------~~~~~~~~l~~~~~~~~a~~l~~  227 (822)
T PRK14574        189 LQASSEAVRLAPTSEE-------VLKNHLEILQRNRIVEPALRLAK  227 (822)
T ss_pred             HHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCCcHHHHHHHH
Confidence            9999999877766531       23333333344444444544444

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=1.7e-05  Score=69.58  Aligned_cols=146  Identities=14%  Similarity=0.117  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCc------ccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccch
Q 024043          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT------TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNL  187 (273)
Q Consensus       114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~------~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~  187 (273)
                      ++.--|.++...++.+.|+.+|++++.+-+.....      ......+..-|.-..+.|+|.+|.++|.+++...+.+. 
T Consensus       205 al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~-  283 (486)
T KOG0550|consen  205 ALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNK-  283 (486)
T ss_pred             HHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcccc-
Confidence            44444566666688999999999999886643221      12234556667777889999999999999987766652 


Q ss_pred             hhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH----HH-----HHHHhhcCHhHHHHHHHhhhccCCCchh--HHHHHH
Q 024043          188 LKYGVKGHLLNAGICQLCKGDVVAITNALERYQ----DI-----AASMDEEDIAKFTDVVKEFDSMTPLDPW--KTTLLL  256 (273)
Q Consensus       188 ~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~----~l-----l~a~~~~d~~~~~~~~~~~~~~~~ld~~--~~~~l~  256 (273)
                       . .....|.+.+.+.+..|....|..-.+...    .+     ..+...-+++++.++|.+|.+..+++.-  ..+.|.
T Consensus       284 -~-~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~  361 (486)
T KOG0550|consen  284 -K-TNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLR  361 (486)
T ss_pred             -c-hhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence             2 233466777888888888888877777654    22     3345667889999999999988776443  445555


Q ss_pred             HHHHhc
Q 024043          257 RVKEKL  262 (273)
Q Consensus       257 ~~~~~~  262 (273)
                      +.+..|
T Consensus       362 ~A~~aL  367 (486)
T KOG0550|consen  362 EAQLAL  367 (486)
T ss_pred             HHHHHH
Confidence            555433

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.32  E-value=0.00028  Score=70.95  Aligned_cols=211  Identities=11%  Similarity=0.143  Sum_probs=133.6

Q ss_pred             HhhHHHHHHHHHHhh-c-c---c-----cCC-CCCHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHH
Q 024043            5 IARAEEFEKKAEKKL-N-G---W-----GLF-GSKYEDAADLFDKA-----------------ANSFKLAKSWDKAGATY   56 (273)
Q Consensus         5 ~~~a~~l~~~Aek~~-k-~---~-----~~~-~~~~~~A~~~~~~a-----------------~~~~~~~~~~~~A~~~~   56 (273)
                      +++|.+++.+-.+.- + .   +     ++- .+++++|.++|.+.                 ...|...|++++|.+.|
T Consensus       523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf  602 (1060)
T PLN03218        523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY  602 (1060)
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            667777777664421 1 0   0     011 16677776666554                 23566778888888877


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 024043           57 VKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFF  135 (273)
Q Consensus        57 ~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y  135 (273)
                      ..+.+.    | ...-..+|+.+...|.+. ++++|++.|.+....    |-.. -..++..+...+...|++++|.+.+
T Consensus       603 ~~M~e~----g-i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~----Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~  672 (1060)
T PLN03218        603 QMIHEY----N-IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK----GVKP-DEVFFSALVDVAGHAGDLDKAFEIL  672 (1060)
T ss_pred             HHHHHc----C-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            766543    1 111234677777777666 888888888775432    2111 1346777888888889999999988


Q ss_pred             HHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHH
Q 024043          136 EKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNA  215 (273)
Q Consensus       136 ~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~  215 (273)
                      .+..+.    |-... ..++..+...|.+.|++++|.++|++.......-      ....|..+...+...|++++|.+.
T Consensus       673 ~eM~k~----G~~pd-~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P------dvvtyN~LI~gy~k~G~~eeAlel  741 (1060)
T PLN03218        673 QDARKQ----GIKLG-TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP------TVSTMNALITALCEGNQLPKALEV  741 (1060)
T ss_pred             HHHHHc----CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHHCCCHHHHHHH
Confidence            886643    22222 3578888899999999999999998874321111      122455666778888999999998


Q ss_pred             HHHHH------------HHHHHH-hhcCHhHHHH
Q 024043          216 LERYQ------------DIAASM-DEEDIAKFTD  236 (273)
Q Consensus       216 ~~~~~------------~ll~a~-~~~d~~~~~~  236 (273)
                      |++..            .++.++ ..|+.+.-..
T Consensus       742 f~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~  775 (1060)
T PLN03218        742 LSEMKRLGLCPNTITYSILLVASERKDDADVGLD  775 (1060)
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            88643            556655 3355544333

>TIGR00540 hemY_coli hemY protein

Probab=98.32  E-value=0.00016  Score=65.68  Aligned_cols=107  Identities=7%  Similarity=0.089  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCc------------------------------ccHH--HHHHHHH
Q 024043          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT------------------------------TSAN--QCKQKVA  159 (273)
Q Consensus       112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~------------------------------~~~~--~~~~~~a  159 (273)
                      .......+..+...|++++|...++++++........                              +...  ..+..+|
T Consensus       263 ~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg  342 (409)
T TIGR00540       263 IALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALG  342 (409)
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence            3455556666666677777777766666644322110                              0111  3455666


Q ss_pred             HHHHHhcCHHHHHHHHHHH--HHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 024043          160 QYAAELEQYHKSIEIYEEI--ARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDIAASM  226 (273)
Q Consensus       160 ~~~~~~g~y~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~a~  226 (273)
                      .++.+.|+|++|.++|+++  ....++.        ..+..++.++...|+..+|.+++++...++-++
T Consensus       343 ~l~~~~~~~~~A~~~le~a~a~~~~p~~--------~~~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~  403 (409)
T TIGR00540       343 QLLMKHGEFIEAADAFKNVAACKEQLDA--------NDLAMAADAFDQAGDKAEAAAMRQDSLGLMLAI  403 (409)
T ss_pred             HHHHHcccHHHHHHHHHHhHHhhcCCCH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence            6666666666666666642  2221111        122345666666666666666666655444443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PLN03077 Protein ECB2; Provisional

Probab=98.31  E-value=0.0011  Score=65.99  Aligned_cols=115  Identities=6%  Similarity=0.021  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchh
Q 024043          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK  193 (273)
Q Consensus       114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~  193 (273)
                      +|+.+...|...|+.++|++.|++..+.    |-.+. ..++..+-..+.+.|.+++|.++|++......-.|     ..
T Consensus       556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~----g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P-----~~  625 (857)
T PLN03077        556 SWNILLTGYVAHGKGSMAVELFNRMVES----GVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP-----NL  625 (857)
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC-----ch
Confidence            3555666666667777777777664432    21111 13355555566777777777777777642211111     11


Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHH---------HHHHHHHHh-hcCHhHHHHHH
Q 024043          194 GHLLNAGICQLCKGDVVAITNALER---------YQDIAASMD-EEDIAKFTDVV  238 (273)
Q Consensus       194 ~~~~~~gl~~l~~gd~~~A~~~~~~---------~~~ll~a~~-~~d~~~~~~~~  238 (273)
                      ..+..++.++...|++++|.+.+++         |..|+.++. .++.+.-+.+.
T Consensus       626 ~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a  680 (857)
T PLN03077        626 KHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAA  680 (857)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Confidence            3455666777788888888888876         336777663 35555444443

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.28  E-value=0.00057  Score=66.28  Aligned_cols=198  Identities=11%  Similarity=0.099  Sum_probs=116.1

Q ss_pred             CCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHH
Q 024043           27 SKYEDAADLFDK-----------AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISC   94 (273)
Q Consensus        27 ~~~~~A~~~~~~-----------a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~   94 (273)
                      |++++|...|..           ....|...|++++|.+.|.+....    |-... ..+|..+..++.+. ++++|.+.
T Consensus       273 g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~i  347 (697)
T PLN03081        273 GDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS----GVSID-QFTFSIMIRIFSRLALLEHAKQA  347 (697)
T ss_pred             CCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhccchHHHHHH
Confidence            788888887764           356788888888888888876432    21111 12455555555544 66666655


Q ss_pred             HHHHH---------------HHHHhcCChhHHH-----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCc
Q 024043           95 LEQAV---------------NMFCDIGRLSMAA-----------RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT  148 (273)
Q Consensus        95 ~~~Al---------------~~~~~~g~~~~~a-----------~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~  148 (273)
                      +...+               +.|.+.|+...+-           .+|+.+...|...|+.++|++.|++..+.    |-.
T Consensus       348 ~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~----g~~  423 (697)
T PLN03081        348 HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAE----GVA  423 (697)
T ss_pred             HHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC
Confidence            54432               2333344433332           24556666777777777777777765432    222


Q ss_pred             ccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHH---------H
Q 024043          149 TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER---------Y  219 (273)
Q Consensus       149 ~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~---------~  219 (273)
                      .. ..++..+-..+...|..++|.++|+.......-.+     ....+..++.++...|++++|.+.+++         |
T Consensus       424 Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p-----~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~  497 (697)
T PLN03081        424 PN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKP-----RAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMW  497 (697)
T ss_pred             CC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC-----CccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHH
Confidence            22 24566666677777777777777777643211111     112345556667778888888887775         3


Q ss_pred             HHHHHHH-hhcCHhHHHHHHH
Q 024043          220 QDIAASM-DEEDIAKFTDVVK  239 (273)
Q Consensus       220 ~~ll~a~-~~~d~~~~~~~~~  239 (273)
                      ..++.++ ..|+.+.-..+..
T Consensus       498 ~~Ll~a~~~~g~~~~a~~~~~  518 (697)
T PLN03081        498 AALLTACRIHKNLELGRLAAE  518 (697)
T ss_pred             HHHHHHHHHcCCcHHHHHHHH
Confidence            3667766 4566665544443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.28  E-value=0.0001  Score=69.87  Aligned_cols=143  Identities=16%  Similarity=0.167  Sum_probs=93.5

Q ss_pred             HHHHHHhcc-CHHHHHHHHHHH------HHHHHhcCChhHHHHH--------HHHHHHHHHhcC-CHHHHHHHHHHH---
Q 024043           78 DAAHCYKKT-SSNEAISCLEQA------VNMFCDIGRLSMAARY--------YKEIAELYESEH-NIEQTIVFFEKA---  138 (273)
Q Consensus        78 ~~~~~~~~~-~~~eA~~~~~~A------l~~~~~~g~~~~~a~~--------l~~lg~~~~~~g-~~~~A~~~y~~A---  138 (273)
                      .+|..|... ++.+|+.+|.+|      +.+.++++-.++.+..        +...+..|+..| ..+.|+.+|.+|   
T Consensus       972 hlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~ 1051 (1416)
T KOG3617|consen  972 HLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMI 1051 (1416)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcch
Confidence            456666655 788888887665      5666666655554432        446677777775 888888888764   


Q ss_pred             ---------------HHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHH------HHHHHhcc------------
Q 024043          139 ---------------ADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEE------IARQSLNN------------  185 (273)
Q Consensus       139 ---------------l~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~------~~~~~~~~------------  185 (273)
                                     +++...+=++.+-+..+.+.++.+....+|++|+.++-.      ++..+.+.            
T Consensus      1052 ~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~m 1131 (1416)
T KOG3617|consen 1052 GKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELM 1131 (1416)
T ss_pred             HHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhc
Confidence                           333333333445567889999999999999999976543      33222111            


Q ss_pred             ------chhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          186 ------NLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       186 ------~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                            ....-..+..+-.++.+++.+|++-.|.+-|.+..
T Consensus      1132 Tp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1132 TPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred             CcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhh
Confidence                  01112234556677888999999988888887765

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.28  E-value=9.2e-06  Score=68.51  Aligned_cols=98  Identities=11%  Similarity=0.091  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhh
Q 024043          110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLK  189 (273)
Q Consensus       110 ~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~  189 (273)
                      ..|..+..=|.-+.+.++|.+|+..|.+||++-..+      +..|.+-|.+|.++|.|+.|++-++.++...+.     
T Consensus        79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n------AVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-----  147 (304)
T KOG0553|consen   79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTN------AVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-----  147 (304)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc------chHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-----
Confidence            345667777787888899999999999999996533      356889999999999999999999999754332     


Q ss_pred             hchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          190 YGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       190 ~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                        ....|.++|++++.+|+++.|.++|.+..
T Consensus       148 --yskay~RLG~A~~~~gk~~~A~~aykKaL  176 (304)
T KOG0553|consen  148 --YSKAYGRLGLAYLALGKYEEAIEAYKKAL  176 (304)
T ss_pred             --HHHHHHHHHHHHHccCcHHHHHHHHHhhh
Confidence              22467899999999999999999987754

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.28  E-value=2.4e-05  Score=66.49  Aligned_cols=100  Identities=9%  Similarity=0.130  Sum_probs=82.9

Q ss_pred             HHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhc
Q 024043          113 RYYKEIAELY-ESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG  191 (273)
Q Consensus       113 ~~l~~lg~~~-~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~  191 (273)
                      ......+..+ ...|+|++|+..|++.+..|....   ....++..+|.+|...|+|++|+..|++++...++++    .
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~---~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~----~  215 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST---YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP----K  215 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc----c
Confidence            4555555554 445999999999999999998653   3457789999999999999999999999998777764    2


Q ss_pred             hhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043          192 VKGHLLNAGICQLCKGDVVAITNALERY  219 (273)
Q Consensus       192 ~~~~~~~~gl~~l~~gd~~~A~~~~~~~  219 (273)
                      ..+.++++|.++...||...|...++..
T Consensus       216 ~~dAl~klg~~~~~~g~~~~A~~~~~~v  243 (263)
T PRK10803        216 AADAMFKVGVIMQDKGDTAKAKAVYQQV  243 (263)
T ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4567889999999999999999988875

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=1.7e-05  Score=69.46  Aligned_cols=110  Identities=15%  Similarity=0.099  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHH---------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043           70 HEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMA---------ARYYKEIAELYESEHNIEQTIVFFEKAA  139 (273)
Q Consensus        70 ~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~---------a~~l~~lg~~~~~~g~~~~A~~~y~~Al  139 (273)
                      ..+|.....-|+.|.+. +|..|..-|++|+........++..         -.++.|++.++.++++|.+|+++..++|
T Consensus       205 l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL  284 (397)
T KOG0543|consen  205 LEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL  284 (397)
T ss_pred             HHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence            34444555555555444 5555555555555555532211110         1244555555555555555555555555


Q ss_pred             HHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          140 DMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                      ++-..+      ..++.+-|.++..+|+|+.|+..|++++...+++
T Consensus       285 e~~~~N------~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N  324 (397)
T KOG0543|consen  285 ELDPNN------VKALYRRGQALLALGEYDLARDDFQKALKLEPSN  324 (397)
T ss_pred             hcCCCc------hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc
Confidence            542211      2445555555555555555555555555444443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.25  E-value=1.5e-05  Score=70.88  Aligned_cols=93  Identities=13%  Similarity=0.118  Sum_probs=77.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhh
Q 024043          115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKG  194 (273)
Q Consensus       115 l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~  194 (273)
                      +...|......|+|++|+++|.+|+++....      ..++..+|.++..+|+|++|+..+++++...+.+       ..
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~-------~~   71 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN------AELYADRAQANIKLGNFTEAVADANKAIELDPSL-------AK   71 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-------HH
Confidence            4445666666799999999999999875432      4678999999999999999999999998755543       24


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          195 HLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       195 ~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      .++++|.++...|++..|...+++..
T Consensus        72 a~~~lg~~~~~lg~~~eA~~~~~~al   97 (356)
T PLN03088         72 AYLRKGTACMKLEEYQTAKAALEKGA   97 (356)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            67888999999999999999998865

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.24  E-value=2.1e-05  Score=69.00  Aligned_cols=191  Identities=13%  Similarity=0.127  Sum_probs=126.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCCh------hHHH
Q 024043           40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL------SMAA  112 (273)
Q Consensus        40 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~------~~~a  112 (273)
                      +.++...|++++|..--...+.+    +..  -+.++.--|.|+.-. +.+.|+.+|++++.+-+..-+.      ...-
T Consensus       176 a~cl~~~~~~~~a~~ea~~ilkl----d~~--n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~l  249 (486)
T KOG0550|consen  176 AECLAFLGDYDEAQSEAIDILKL----DAT--NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKL  249 (486)
T ss_pred             hhhhhhcccchhHHHHHHHHHhc----ccc--hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHH
Confidence            45666677777776633332222    211  122333345555444 8899999999999876543221      1223


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhch
Q 024043          113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGV  192 (273)
Q Consensus       113 ~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~  192 (273)
                      ..+.+-|.-..+.|+|..|.++|.+||.+-+...  ...+.+|.+.|.+...+|+..+|+.....++....       +.
T Consensus       250 e~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~--~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~-------sy  320 (486)
T KOG0550|consen  250 EVKKERGNDAFKNGNYRKAYECYTEALNIDPSNK--KTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS-------SY  320 (486)
T ss_pred             HHHHhhhhhHhhccchhHHHHHHHHhhcCCcccc--chhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH-------HH
Confidence            4455667777777999999999999999987744  34468999999999999999999999999864321       23


Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCHhHHHHHHHhhhccCCC
Q 024043          193 KGHLLNAGICQLCKGDVVAITNALERYQDIAASMDEEDIAKFTDVVKEFDSMTPL  247 (273)
Q Consensus       193 ~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~a~~~~d~~~~~~~~~~~~~~~~l  247 (273)
                      ...++..+.||+..++++.|.+-++...++-..+  .+-..+.++.....+..+-
T Consensus       321 ikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~--e~r~~l~~A~~aLkkSkRk  373 (486)
T KOG0550|consen  321 IKALLRRANCHLALEKWEEAVEDYEKAMQLEKDC--EIRRTLREAQLALKKSKRK  373 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--chHHHHHHHHHHHHHhhhh
Confidence            3467788999999999999988888865432221  1223344444444444444

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.24  E-value=0.00037  Score=66.55  Aligned_cols=83  Identities=14%  Similarity=0.201  Sum_probs=54.4

Q ss_pred             hHHHHHHHHHHhhccccCCCCCHHHHHHHHHH--------------HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Q 024043            7 RAEEFEKKAEKKLNGWGLFGSKYEDAADLFDK--------------AANSFKLAKSWDKAGATYVKLANCHLKLESKHEA   72 (273)
Q Consensus         7 ~a~~l~~~Aek~~k~~~~~~~~~~~A~~~~~~--------------a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~a   72 (273)
                      +.+.+|.+|.-++-     .|++++|..++.+              .|.+|..+|+..++..++..|+.+..+  ++   
T Consensus       138 ~l~~ll~eAN~lfa-----rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~--d~---  207 (895)
T KOG2076|consen  138 ELRQLLGEANNLFA-----RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK--DY---  207 (895)
T ss_pred             HHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC--Ch---
Confidence            45666666665443     2678888777765              488999999999999999999877532  22   


Q ss_pred             HHHHHHHHHHHhcc-CHHHHHHHHHHHHH
Q 024043           73 AQAYVDAAHCYKKT-SSNEAISCLEQAVN  100 (273)
Q Consensus        73 a~~~~~~~~~~~~~-~~~eA~~~~~~Al~  100 (273)
                       .-+..++....+. ...+|.-||.+|+.
T Consensus       208 -e~W~~ladls~~~~~i~qA~~cy~rAI~  235 (895)
T KOG2076|consen  208 -ELWKRLADLSEQLGNINQARYCYSRAIQ  235 (895)
T ss_pred             -HHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence             2233344444444 46666666666654

>TIGR00540 hemY_coli hemY protein

Probab=98.22  E-value=0.00044  Score=62.71  Aligned_cols=21  Identities=5%  Similarity=-0.235  Sum_probs=11.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHH
Q 024043          200 GICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       200 gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      +..+...|++++|...+++..
T Consensus       270 a~~l~~~g~~~~A~~~l~~~l  290 (409)
T TIGR00540       270 AEHLIDCDDHDSAQEIIFDGL  290 (409)
T ss_pred             HHHHHHCCChHHHHHHHHHHH
Confidence            344555566666666555543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.21  E-value=3.5e-05  Score=67.63  Aligned_cols=134  Identities=13%  Similarity=0.154  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--CHH-------HHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHH
Q 024043           34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLE--SKH-------EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFC  103 (273)
Q Consensus        34 ~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~-------~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~  103 (273)
                      .....-|+.|...|+|..|..-|.+|+.....-.  +..       --..++.|++.|+.++ +|.+|+.++.+++++-.
T Consensus       209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~  288 (397)
T KOG0543|consen  209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP  288 (397)
T ss_pred             HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence            3444457888888888888888888887775211  111       2334688999999999 99999999999998755


Q ss_pred             hcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCH-HHHHHHHHHHH
Q 024043          104 DIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQY-HKSIEIYEEIA  179 (273)
Q Consensus       104 ~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y-~~A~~~~~~~~  179 (273)
                      .+      .++|.+-|.++..+|+|+.|+..|++|+++...+.      .+...+..+..+..++ ++..++|.+..
T Consensus       289 ~N------~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nk------a~~~el~~l~~k~~~~~~kekk~y~~mF  353 (397)
T KOG0543|consen  289 NN------VKALYRRGQALLALGEYDLARDDFQKALKLEPSNK------AARAELIKLKQKIREYEEKEKKMYANMF  353 (397)
T ss_pred             Cc------hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44      46999999999999999999999999999977553      3344555555554444 44467777764

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.21  E-value=0.00011  Score=66.43  Aligned_cols=156  Identities=10%  Similarity=0.058  Sum_probs=90.2

Q ss_pred             HHHHhhc-cc-cCCCCCHHHHHHHHHHHH--------------HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 024043           14 KAEKKLN-GW-GLFGSKYEDAADLFDKAA--------------NSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYV   77 (273)
Q Consensus        14 ~Aek~~k-~~-~~~~~~~~~A~~~~~~a~--------------~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~   77 (273)
                      +|.+.+. |+ .++.|||+.|......+.              ..-...|+++.|..++.++.+......    .+ ...
T Consensus        83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~----~~-~~l  157 (398)
T PRK10747         83 RARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQ----LP-VEI  157 (398)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcch----HH-HHH
Confidence            4444443 42 234477777776666542              223567788888888888765432111    11 111


Q ss_pred             HHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc------------
Q 024043           78 DAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN------------  144 (273)
Q Consensus        78 ~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~------------  144 (273)
                      ..+.++... ++++|+..+++..+..+++.      .++.-++.+|...|++++|++.+.+....-..            
T Consensus       158 ~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~------~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a  231 (398)
T PRK10747        158 TRVRIQLARNENHAARHGVDKLLEVAPRHP------EVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQA  231 (398)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            235566555 88888888888776654433      36667777777778888777555554421100            


Q ss_pred             -----------------------c-CCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 024043          145 -----------------------E-EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR  180 (273)
Q Consensus       145 -----------------------~-~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~  180 (273)
                                             . ............+|..+...|++++|.+..+++..
T Consensus       232 ~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~  291 (398)
T PRK10747        232 WIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK  291 (398)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence                                   0 00011233455667777788888888888877754

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.19  E-value=0.00056  Score=68.82  Aligned_cols=129  Identities=7%  Similarity=0.023  Sum_probs=82.1

Q ss_pred             HHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHH
Q 024043           75 AYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ  153 (273)
Q Consensus        75 ~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~  153 (273)
                      +|..+..+|.+. ++++|.+.|++..+.    | ...-..++..+...|.+.|++++|+..|.+....    |-... ..
T Consensus       581 TynaLI~ay~k~G~ldeA~elf~~M~e~----g-i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~----Gv~PD-~~  650 (1060)
T PLN03218        581 TVGALMKACANAGQVDRAKEVYQMIHEY----N-IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK----GVKPD-EV  650 (1060)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHc----C-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HH
Confidence            444444555444 666666666655432    1 1112346777777777888888888888765432    22222 35


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043          154 CKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY  219 (273)
Q Consensus       154 ~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~  219 (273)
                      ++..+...+.+.|++++|.+++.+........      ....+..++.+|...|+++.|.+.|++.
T Consensus       651 TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p------d~~tynsLI~ay~k~G~~eeA~~lf~eM  710 (1060)
T PLN03218        651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKL------GTVSYSSLMGACSNAKNWKKALELYEDI  710 (1060)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            67788888888899999999888875432111      1124455667788899999999888864

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.19  E-value=4.1e-05  Score=56.98  Aligned_cols=99  Identities=16%  Similarity=0.102  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccH
Q 024043           73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSA  151 (273)
Q Consensus        73 a~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~  151 (273)
                      ...++.-|.+..+. +.+.|++.|.+|+.+..+.      +.+|+|-+..+...|+.++|++-+.+|+++.-..  ...+
T Consensus        43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~r------aSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~--trta  114 (175)
T KOG4555|consen   43 SRELELKAIALAEAGDLDGALELFGQALCLAPER------ASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ--TRTA  114 (175)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhcccc------hHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc--chHH
Confidence            34445556666555 9999999999999998765      4599999999999999999999999999997544  4567


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043          152 NQCKQKVAQYAAELEQYHKSIEIYEEIA  179 (273)
Q Consensus       152 ~~~~~~~a~~~~~~g~y~~A~~~~~~~~  179 (273)
                      .+++.+-|.+|..+|+-+.|..-|+.+.
T Consensus       115 cqa~vQRg~lyRl~g~dd~AR~DFe~AA  142 (175)
T KOG4555|consen  115 CQAFVQRGLLYRLLGNDDAARADFEAAA  142 (175)
T ss_pred             HHHHHHHHHHHHHhCchHHHHHhHHHHH
Confidence            7889999999999999999999999985

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.16  E-value=0.00014  Score=70.84  Aligned_cols=143  Identities=13%  Similarity=0.080  Sum_probs=98.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHH
Q 024043           25 FGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFC  103 (273)
Q Consensus        25 ~~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~  103 (273)
                      +.|.+.+|+.   +....+...+++++|+.....+++....      ....|.-.|.++... ++.++.-.  +++.++.
T Consensus        26 ~~p~n~~a~~---~Li~~~~~~~~~deai~i~~~~l~~~P~------~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~   94 (906)
T PRK14720         26 YSLSKFKELD---DLIDAYKSENLTDEAKDICEEHLKEHKK------SISALYISGILSLSRRPLNDSNLL--NLIDSFS   94 (906)
T ss_pred             CCcchHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHhCCc------ceehHHHHHHHHHhhcchhhhhhh--hhhhhcc
Confidence            3466666654   5677888999999999988866655421      122333344444333 33333222  2222222


Q ss_pred             -------------hcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHH
Q 024043          104 -------------DIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHK  170 (273)
Q Consensus       104 -------------~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~  170 (273)
                                   ..|+....-.++..+|.||..+|++++|...|++++++-.      .-+.+++++|..|... +.++
T Consensus        95 ~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~------~n~~aLNn~AY~~ae~-dL~K  167 (906)
T PRK14720         95 QNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADR------DNPEIVKKLATSYEEE-DKEK  167 (906)
T ss_pred             cccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc------ccHHHHHHHHHHHHHh-hHHH
Confidence                         2233334445999999999999999999999999999862      2257899999999999 9999


Q ss_pred             HHHHHHHHHHHHhcc
Q 024043          171 SIEIYEEIARQSLNN  185 (273)
Q Consensus       171 A~~~~~~~~~~~~~~  185 (273)
                      |.+++.+++.+.+..
T Consensus       168 A~~m~~KAV~~~i~~  182 (906)
T PRK14720        168 AITYLKKAIYRFIKK  182 (906)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999998766654

>PRK15331 chaperone protein SicA; Provisional

Probab=98.12  E-value=8.8e-05  Score=57.71  Aligned_cols=99  Identities=13%  Similarity=0.107  Sum_probs=75.2

Q ss_pred             hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccch
Q 024043          108 LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNL  187 (273)
Q Consensus       108 ~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~  187 (273)
                      +...-......|--+...|++++|...|+--.- +    ++ .....+..+|.|+..+++|++|+..|..+....++++.
T Consensus        33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~-~----d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~  106 (165)
T PRK15331         33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCI-Y----DF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR  106 (165)
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-h----Cc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC
Confidence            333444555666666667999999998864443 2    12 22456899999999999999999999999766666653


Q ss_pred             hhhchhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043          188 LKYGVKGHLLNAGICQLCKGDVVAITNALERY  219 (273)
Q Consensus       188 ~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~  219 (273)
                             ..+.+|.|++..|+...|+.+|+..
T Consensus       107 -------p~f~agqC~l~l~~~~~A~~~f~~a  131 (165)
T PRK15331        107 -------PVFFTGQCQLLMRKAAKARQCFELV  131 (165)
T ss_pred             -------ccchHHHHHHHhCCHHHHHHHHHHH
Confidence                   3578899999999999999998875

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.12  E-value=0.00023  Score=58.90  Aligned_cols=125  Identities=17%  Similarity=0.164  Sum_probs=74.0

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 024043           42 SFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAEL  121 (273)
Q Consensus        42 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~  121 (273)
                      .+...|+|++|+++|+.-++     .||...+..-..++.+-..+..-+||+....-++.|...      ..+|..++++
T Consensus        95 ~lEa~~~~~~A~e~y~~lL~-----ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D------~EAW~eLaei  163 (289)
T KOG3060|consen   95 LLEATGNYKEAIEYYESLLE-----DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND------QEAWHELAEI  163 (289)
T ss_pred             HHHHhhchhhHHHHHHHHhc-----cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc------HHHHHHHHHH
Confidence            34444555555555554332     233333333344444444444456666666666665433      3477888888


Q ss_pred             HHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHh
Q 024043          122 YESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE---QYHKSIEIYEEIARQSL  183 (273)
Q Consensus       122 ~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g---~y~~A~~~~~~~~~~~~  183 (273)
                      |...|+|++|.-||++-+=+-+      ....++.++|+++.-+|   ++.-|.++|.+++...+
T Consensus       164 Y~~~~~f~kA~fClEE~ll~~P------~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~  222 (289)
T KOG3060|consen  164 YLSEGDFEKAAFCLEELLLIQP------FNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP  222 (289)
T ss_pred             HHhHhHHHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence            8888888888888877665532      22456777777766554   67777788888775544

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.11  E-value=0.00061  Score=66.10  Aligned_cols=34  Identities=24%  Similarity=0.236  Sum_probs=25.1

Q ss_pred             CCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHH
Q 024043           27 SKYEDAADLFDK-----------AANSFKLAKSWDKAGATYVKLA   60 (273)
Q Consensus        27 ~~~~~A~~~~~~-----------a~~~~~~~~~~~~A~~~~~~a~   60 (273)
                      |+++.|..+|.+           ....|...|++++|...|.+..
T Consensus       172 g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~  216 (697)
T PLN03081        172 GMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMW  216 (697)
T ss_pred             CCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            677888777654           3456777788888888888764

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=98.10  E-value=9.7e-05  Score=60.78  Aligned_cols=94  Identities=16%  Similarity=0.174  Sum_probs=80.1

Q ss_pred             CHHHHHHHHHHHHHHHHhc-CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc----C---CcccHHHHHHHH
Q 024043           87 SSNEAISCLEQAVNMFCDI-GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE----E---VTTSANQCKQKV  158 (273)
Q Consensus        87 ~~~eA~~~~~~Al~~~~~~-g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~----~---~~~~~~~~~~~~  158 (273)
                      .+++|++.|.-|+-.+.-. +++...|.++.++|.+|...|+.++...++++|++.|++.    .   .......++.-+
T Consensus        92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLi  171 (214)
T PF09986_consen   92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLI  171 (214)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHH
Confidence            7889999999999888754 4777899999999999999999888888888998888742    1   234556788999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHH
Q 024043          159 AQYAAELEQYHKSIEIYEEIAR  180 (273)
Q Consensus       159 a~~~~~~g~y~~A~~~~~~~~~  180 (273)
                      |.+..++|++++|+..|.+++.
T Consensus       172 geL~rrlg~~~eA~~~fs~vi~  193 (214)
T PF09986_consen  172 GELNRRLGNYDEAKRWFSRVIG  193 (214)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHc
Confidence            9999999999999999999973

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.08  E-value=0.0019  Score=58.44  Aligned_cols=134  Identities=11%  Similarity=0.046  Sum_probs=94.0

Q ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHhcC
Q 024043           28 KYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCY-KKTSSNEAISCLEQAVNMFCDIG  106 (273)
Q Consensus        28 ~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~-~~~~~~eA~~~~~~Al~~~~~~g  106 (273)
                      +...+-..+.+ |-+....|+|+.|.....++.+.    .+.  ....+..++.+. ...++++|..++.+|.+..+...
T Consensus        80 r~~~~~~~~~~-gl~a~~eGd~~~A~k~l~~~~~~----~~~--p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~  152 (398)
T PRK10747         80 KRRRARKQTEQ-ALLKLAEGDYQQVEKLMTRNADH----AEQ--PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQ  152 (398)
T ss_pred             HHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHhc----ccc--hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcch
Confidence            44455555544 66667789999998766665443    111  233456667774 44499999999999976443221


Q ss_pred             ChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043          107 RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA  179 (273)
Q Consensus       107 ~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~  179 (273)
                          .+ .....+.++...|++++|...+++..+..+..      ..++..++.+|...|++++|++++.+..
T Consensus       153 ----~~-~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~------~~al~ll~~~~~~~gdw~~a~~~l~~l~  214 (398)
T PRK10747        153 ----LP-VEITRVRIQLARNENHAARHGVDKLLEVAPRH------PEVLRLAEQAYIRTGAWSSLLDILPSMA  214 (398)
T ss_pred             ----HH-HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence                11 22234888888999999999999998876433      3668888999999999999998777764

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.99  E-value=0.00026  Score=52.83  Aligned_cols=101  Identities=20%  Similarity=0.180  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHH
Q 024043           33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMA  111 (273)
Q Consensus        33 ~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~  111 (273)
                      ..-.+.-|......|+.+.|++-|.+++.+..+      .+.+|++-+..++-. ++++|++-+.+|+++.-  +....+
T Consensus        43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~------raSayNNRAQa~RLq~~~e~ALdDLn~AleLag--~~trta  114 (175)
T KOG4555|consen   43 SRELELKAIALAEAGDLDGALELFGQALCLAPE------RASAYNNRAQALRLQGDDEEALDDLNKALELAG--DQTRTA  114 (175)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhccc------chHhhccHHHHHHHcCChHHHHHHHHHHHHhcC--ccchHH
Confidence            334445588889999999999999999999743      356899999999877 99999999999999863  446677


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043          112 ARYYKEIAELYESEHNIEQTIVFFEKAADM  141 (273)
Q Consensus       112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~  141 (273)
                      ..++..-|.+|..+|+-+.|..-|+.|.++
T Consensus       115 cqa~vQRg~lyRl~g~dd~AR~DFe~AA~L  144 (175)
T KOG4555|consen  115 CQAFVQRGLLYRLLGNDDAARADFEAAAQL  144 (175)
T ss_pred             HHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence            888999999999999999999999998876

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=97.98  E-value=0.00016  Score=51.40  Aligned_cols=84  Identities=14%  Similarity=0.069  Sum_probs=67.9

Q ss_pred             HHHHHhccCHHHHHHHHHHHHHHHHhcCChh---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHH
Q 024043           79 AAHCYKKTSSNEAISCLEQAVNMFCDIGRLS---MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCK  155 (273)
Q Consensus        79 ~~~~~~~~~~~eA~~~~~~Al~~~~~~g~~~---~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~  155 (273)
                      ..+..+..++.+|++.+.+..+.....+...   ....++.++|.++...|++++|+..+++|+.+.++.++......++
T Consensus         5 ~~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al   84 (94)
T PF12862_consen    5 YLNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYAL   84 (94)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence            3444555589999999999999888777655   6677788899999999999999999999999999999877777776


Q ss_pred             HHHHHHH
Q 024043          156 QKVAQYA  162 (273)
Q Consensus       156 ~~~a~~~  162 (273)
                      ..+..+.
T Consensus        85 ~~~~~l~   91 (94)
T PF12862_consen   85 SWLANLL   91 (94)
T ss_pred             HHHHHHh
Confidence            6665543

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.96  E-value=0.00031  Score=65.44  Aligned_cols=143  Identities=15%  Similarity=0.066  Sum_probs=97.0

Q ss_pred             CCHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc---C------HHHHHHHH
Q 024043           27 SKYEDAADLFDKAANSFKL--AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT---S------SNEAISCL   95 (273)
Q Consensus        27 ~~~~~A~~~~~~a~~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~---~------~~eA~~~~   95 (273)
                      +.-..|.++|.++-..+..  .+++..|+.+|++|+++-...      +.++..++.+|...   .      ...+.+..
T Consensus       334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~------a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~  407 (517)
T PRK10153        334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDF------TYAQAEKALADIVRHSQQPLDEKQLAALSTEL  407 (517)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            4556899999986433321  234789999999999885332      33444444444222   2      22333333


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHH
Q 024043           96 EQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIY  175 (273)
Q Consensus        96 ~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~  175 (273)
                      ++++.+-   .+... +.++.-+|..+...|++++|...+++|+++-.      + ...+..+|.++...|++++|++.|
T Consensus       408 ~~a~al~---~~~~~-~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p------s-~~a~~~lG~~~~~~G~~~eA~~~~  476 (517)
T PRK10153        408 DNIVALP---ELNVL-PRIYEILAVQALVKGKTDEAYQAINKAIDLEM------S-WLNYVLLGKVYELKGDNRLAADAY  476 (517)
T ss_pred             HHhhhcc---cCcCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------C-HHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3333321   12211 36777778888888999999999999999962      2 468999999999999999999999


Q ss_pred             HHHHHHHhccc
Q 024043          176 EEIARQSLNNN  186 (273)
Q Consensus       176 ~~~~~~~~~~~  186 (273)
                      +++....+..+
T Consensus       477 ~~A~~L~P~~p  487 (517)
T PRK10153        477 STAFNLRPGEN  487 (517)
T ss_pred             HHHHhcCCCCc
Confidence            99987666654

>KOG3024 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.95  E-value=0.0084  Score=50.50  Aligned_cols=231  Identities=14%  Similarity=0.135  Sum_probs=161.5

Q ss_pred             HHHHHHhhccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHH
Q 024043           12 EKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEA   91 (273)
Q Consensus        12 ~~~Aek~~k~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~eA   91 (273)
                      +++.+.+++- ++-+|+|-+|...|.-..+-|..++.++.|++.....+.++-+.+....++........++.+......
T Consensus         6 ~~R~e~kl~a-~~~~~d~Yeahqm~RTl~fR~~~~K~~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~eka~~ad~   84 (312)
T KOG3024|consen    6 LQRVEGKLRA-SIELGDYYEAHQMYRTLVFRYTRQKAHEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEKAEVADS   84 (312)
T ss_pred             HHHHHHHHhh-ccccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhHh
Confidence            3444554441 234579999999999999999999999999999999999998888877788888777777755322111


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHhccC-CcccHHHHHHHHHHHHHHhcCHH
Q 024043           92 ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHN-IEQTIVFFEKAADMFQNEE-VTTSANQCKQKVAQYAAELEQYH  169 (273)
Q Consensus        92 ~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~-~~~A~~~y~~Al~~~~~~~-~~~~~~~~~~~~a~~~~~~g~y~  169 (273)
                      +...                    .+++.++...+. -.+=..+.++|+.+..+-+ -+.+.+..+.-+|..+..-+++.
T Consensus        85 ~~~~--------------------anl~~ll~e~~~~eper~~~v~raikWS~~~~~~k~G~p~lH~~la~~l~~e~~~~  144 (312)
T KOG3024|consen   85 LLKV--------------------ANLAELLGEADPSEPERKTFVRRAIKWSKEFGEGKYGHPELHALLADKLWTEDNVE  144 (312)
T ss_pred             HHHH--------------------HHHHHHHhhcCCCccHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcccHH
Confidence            1111                    233444433322 2234566777888877753 34566788889999999989999


Q ss_pred             HHHHHHHHHH------H----HHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH-------------------
Q 024043          170 KSIEIYEEIA------R----QSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ-------------------  220 (273)
Q Consensus       170 ~A~~~~~~~~------~----~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~-------------------  220 (273)
                      +|..+|-..-      .    ..+.. ..+...-..+.++.+-++...|...|.+.+..|.                   
T Consensus       145 ~a~~HFll~~d~s~~a~~ll~y~~~r-~f~~e~d~f~~~aVlq~L~len~~~A~~s~t~yt~~f~~k~~p~~e~~~~~~~  223 (312)
T KOG3024|consen  145 EARRHFLLSEDGSKFAYMLLEYSMSR-GFKSEPDVFYVQAVLQYLCLENDSSAARSFTTYTSMFNMKDFPMDEIKHKAGT  223 (312)
T ss_pred             HHHhHhhhcCChHHHHHHHHHHHhhc-ccccCchHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccccchhhcccccc
Confidence            9998876541      0    01110 0111112344566777888888889999998887                   


Q ss_pred             ---------------HHHHHHhhcCHhHHHHHHHhhhccCCCchhHHHHHHHHHHhccc
Q 024043          221 ---------------DIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKA  264 (273)
Q Consensus       221 ---------------~ll~a~~~~d~~~~~~~~~~~~~~~~ld~~~~~~l~~~~~~~~~  264 (273)
                                     =|+..++.+|...|......|+....-|+-....|.+|.+..-|
T Consensus       224 k~~~~~~~pllNFl~~Ll~t~~~k~~~~f~~L~~~Y~~slkrd~~~~~~L~~IgelyFg  282 (312)
T KOG3024|consen  224 KNPFPFEYPLLNFLHFLLETIQRKDLPLFLMLRVKYQPSLKRDQAYNEYLDRIGELYFG  282 (312)
T ss_pred             cCCCccccchHHHHHHHHHHHhccccHHHHHHHHHccchhhhhHHHHHHHHHHHHHHcC
Confidence                           26778899999999999999998777787778899999875543

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.93  E-value=0.00026  Score=68.32  Aligned_cols=128  Identities=12%  Similarity=0.099  Sum_probs=90.0

Q ss_pred             HHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHH
Q 024043           79 AAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQK  157 (273)
Q Consensus        79 ~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~  157 (273)
                      .|-.|.+. ++..|+..|+-|+.+-++.      -++|..+|++|-..|+|.-|+..|.+|..+-+.      .-.....
T Consensus       568 rG~yyLea~n~h~aV~~fQsALR~dPkD------~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~------s~y~~fk  635 (1238)
T KOG1127|consen  568 RGPYYLEAHNLHGAVCEFQSALRTDPKD------YNLWLGLGEAYPESGRYSHALKVFTKASLLRPL------SKYGRFK  635 (1238)
T ss_pred             ccccccCccchhhHHHHHHHHhcCCchh------HHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH------hHHHHHH
Confidence            44455554 7788999999888766544      359999999999999999999999999987432      2344667


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHH
Q 024043          158 VAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER  218 (273)
Q Consensus       158 ~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~  218 (273)
                      .+.+....|+|.+|+..+..++.........+-+..+.+.+....+...|=..+|...++.
T Consensus       636 ~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~ek  696 (1238)
T KOG1127|consen  636 EAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEK  696 (1238)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            7888899999999999999987432222222345556666665555555544445444444

>PLN03077 Protein ECB2; Provisional

Probab=97.92  E-value=0.0049  Score=61.28  Aligned_cols=61  Identities=7%  Similarity=-0.020  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043          153 QCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY  219 (273)
Q Consensus       153 ~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~  219 (273)
                      .+|+.+...|...|+.++|+++|++.......-     .. ..+..+...+...|++++|.+.|+..
T Consensus       555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-----d~-~T~~~ll~a~~~~g~v~ea~~~f~~M  615 (857)
T PLN03077        555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-----DE-VTFISLLCACSRSGMVTQGLEYFHSM  615 (857)
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----Cc-ccHHHHHHHHhhcChHHHHHHHHHHH
Confidence            346666777777888888888888765321110     11 12233334566678888888877754

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.91  E-value=0.0032  Score=52.31  Aligned_cols=165  Identities=16%  Similarity=0.066  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChh
Q 024043           31 DAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLS  109 (273)
Q Consensus        31 ~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~  109 (273)
                      +-+.+|++....-.-.|+.+-|-.|+.+...-+..  ++    ++..--|..+... ++++|+++|..-+     ..|+.
T Consensus        50 e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~--S~----RV~~lkam~lEa~~~~~~A~e~y~~lL-----~ddpt  118 (289)
T KOG3060|consen   50 EIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG--SK----RVGKLKAMLLEATGNYKEAIEYYESLL-----EDDPT  118 (289)
T ss_pred             hHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC--Ch----hHHHHHHHHHHHhhchhhHHHHHHHHh-----ccCcc
Confidence            45677888877777788888888888876655522  21    1222223333323 6777777777654     35566


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhh
Q 024043          110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLK  189 (273)
Q Consensus       110 ~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~  189 (273)
                      ..+---++++.+-.. |+.-+|++....=++.|..+      .++|..++.+|+..|+|.+|+-+|++.+...+-++.  
T Consensus       119 ~~v~~KRKlAilka~-GK~l~aIk~ln~YL~~F~~D------~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l--  189 (289)
T KOG3060|consen  119 DTVIRKRKLAILKAQ-GKNLEAIKELNEYLDKFMND------QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPL--  189 (289)
T ss_pred             hhHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHhcCc------HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHH--
Confidence            666666777766665 88889999999999999654      478999999999999999999999999866555432  


Q ss_pred             hchhhHHHHHHHHHHhcC---CHHHHHHHHHHHH
Q 024043          190 YGVKGHLLNAGICQLCKG---DVVAITNALERYQ  220 (273)
Q Consensus       190 ~~~~~~~~~~gl~~l~~g---d~~~A~~~~~~~~  220 (273)
                           ++.+++.++..+|   ++..++.++.+..
T Consensus       190 -----~f~rlae~~Yt~gg~eN~~~arkyy~~al  218 (289)
T KOG3060|consen  190 -----YFQRLAEVLYTQGGAENLELARKYYERAL  218 (289)
T ss_pred             -----HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence                 3445555544444   4555666666543

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=97.88  E-value=0.02  Score=54.73  Aligned_cols=223  Identities=15%  Similarity=0.070  Sum_probs=153.8

Q ss_pred             HhhHHHHHHHHHHhhcccc-CCC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 024043            5 IARAEEFEKKAEKKLNGWG-LFG-SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHC   82 (273)
Q Consensus         5 ~~~a~~l~~~Aek~~k~~~-~~~-~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~   82 (273)
                      +++=.+|++-|=|.|.... -|+ +...+|.-.++-+..++....+++.|..+..++..+.++.+-..-.-.+-.-++.+
T Consensus        30 l~~Y~kLI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i  109 (608)
T PF10345_consen   30 LKQYYKLIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARI  109 (608)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence            4444566666666665211 345 56778888888877888899999999999999999998844444445555566888


Q ss_pred             HhccCHHHHHHHHHHHHHHHHhcCChhHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHH
Q 024043           83 YKKTSSNEAISCLEQAVNMFCDIGRLSMA-ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQY  161 (273)
Q Consensus        83 ~~~~~~~eA~~~~~~Al~~~~~~g~~~~~-a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~  161 (273)
                      +.+.++..|....+++++.+...+...-. +--+.++...... +++..|++.++....+....+++.....+...-+.+
T Consensus       110 ~~~~~~~~a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~-~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l  188 (608)
T PF10345_consen  110 YFKTNPKAALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQH-KDYNAALENLQSIAQLANQRGDPAVFVLASLSEALL  188 (608)
T ss_pred             HHhcCHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Confidence            88887777999999999999875442221 1112222222233 899999999999999998778776655666666778


Q ss_pred             HHHhcCHHHHHHHHHHHHHHHhc----cchhhhchhhHHHHH-HHHHHhcCCHHHHHHHHHHHHHHHHHHhh
Q 024043          162 AAELEQYHKSIEIYEEIARQSLN----NNLLKYGVKGHLLNA-GICQLCKGDVVAITNALERYQDIAASMDE  228 (273)
Q Consensus       162 ~~~~g~y~~A~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-gl~~l~~gd~~~A~~~~~~~~~ll~a~~~  228 (273)
                      +...+.++++++..+++.....+    .............-+ ..|.+..|++..+...+.+....++....
T Consensus       189 ~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~  260 (608)
T PF10345_consen  189 HLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKK  260 (608)
T ss_pred             HhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc
Confidence            88888899999999988532211    111111122122222 34578899999999999999888877644

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.87  E-value=0.00043  Score=64.87  Aligned_cols=111  Identities=14%  Similarity=0.047  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHH
Q 024043           92 ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS  171 (273)
Q Consensus        92 ~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A  171 (273)
                      -.+|++|.+++...     .+++.+.+|......++|.++.++++.++++..      ....+|..+|-+..+++++..|
T Consensus       470 ~s~yEkawElsn~~-----sarA~r~~~~~~~~~~~fs~~~~hle~sl~~np------lq~~~wf~~G~~ALqlek~q~a  538 (777)
T KOG1128|consen  470 PSLYEKAWELSNYI-----SARAQRSLALLILSNKDFSEADKHLERSLEINP------LQLGTWFGLGCAALQLEKEQAA  538 (777)
T ss_pred             hHHHHHHHHHhhhh-----hHHHHHhhccccccchhHHHHHHHHHHHhhcCc------cchhHHHhccHHHHHHhhhHHH
Confidence            36788888877543     344667777777778999999999999999864      4457899999999999999999


Q ss_pred             HHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          172 IEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      ...|.+...-.++       ..+.+.|+...|+..|+..+|..++.+..
T Consensus       539 v~aF~rcvtL~Pd-------~~eaWnNls~ayi~~~~k~ra~~~l~EAl  580 (777)
T KOG1128|consen  539 VKAFHRCVTLEPD-------NAEAWNNLSTAYIRLKKKKRAFRKLKEAL  580 (777)
T ss_pred             HHHHHHHhhcCCC-------chhhhhhhhHHHHHHhhhHHHHHHHHHHh
Confidence            9999998765554       34578888889999999999999998865

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.86  E-value=0.00018  Score=60.20  Aligned_cols=98  Identities=10%  Similarity=0.084  Sum_probs=80.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhh
Q 024043          115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKG  194 (273)
Q Consensus       115 l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~  194 (273)
                      +.+.|.-+...|+|..|..-|..=+.-|....   -...++..+|.++..+|+|+.|...|..++...+.++    ...+
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~---~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~----KApd  216 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNST---YTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSP----KAPD  216 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc---ccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCC----CChH
Confidence            56666666777999999999998888887654   3356789999999999999999999999987766654    3557


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043          195 HLLNAGICQLCKGDVVAITNALERY  219 (273)
Q Consensus       195 ~~~~~gl~~l~~gd~~~A~~~~~~~  219 (273)
                      .++++|.|....|+.+.|+..|++.
T Consensus       217 allKlg~~~~~l~~~d~A~atl~qv  241 (262)
T COG1729         217 ALLKLGVSLGRLGNTDEACATLQQV  241 (262)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            8899999999999999888888874

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=97.86  E-value=0.00047  Score=57.24  Aligned_cols=115  Identities=12%  Similarity=0.157  Sum_probs=89.8

Q ss_pred             CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc
Q 024043           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE  166 (273)
Q Consensus        87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g  166 (273)
                      +-+.+..+..+++..+....      ..+.-.|......|++.+|+..+++|..+.+.+      ...+..+|.+|.+.|
T Consensus        81 ~a~~~l~~~~~~~~~~~~d~------~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d------~~~~~~lgaaldq~G  148 (257)
T COG5010          81 DADSSLAVLQKSAIAYPKDR------ELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTD------WEAWNLLGAALDQLG  148 (257)
T ss_pred             cccchHHHHhhhhccCcccH------HHHHHHHHHHHHhcchHHHHHHHHHHhccCCCC------hhhhhHHHHHHHHcc
Confidence            55555555555554443332      244447888888899999999999999886544      367889999999999


Q ss_pred             CHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          167 QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       167 ~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      +.++|...|.+++.-.++++       .+..|+|..++..||+..|+..+....
T Consensus       149 r~~~Ar~ay~qAl~L~~~~p-------~~~nNlgms~~L~gd~~~A~~lll~a~  195 (257)
T COG5010         149 RFDEARRAYRQALELAPNEP-------SIANNLGMSLLLRGDLEDAETLLLPAY  195 (257)
T ss_pred             ChhHHHHHHHHHHHhccCCc-------hhhhhHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999999987666654       367899999999999999999888743

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.84  E-value=0.0076  Score=53.45  Aligned_cols=168  Identities=11%  Similarity=0.032  Sum_probs=97.2

Q ss_pred             HHHHhccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHH
Q 024043           80 AHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVA  159 (273)
Q Consensus        80 ~~~~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a  159 (273)
                      ...|...++..|+.+-++++..-.+.-      .++..-|.++...|++++|+-.|+.|..+.+      ..-.||..+-
T Consensus       308 ~~l~~~K~~~rAL~~~eK~I~~~~r~~------~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap------~rL~~Y~GL~  375 (564)
T KOG1174|consen  308 QLLYDEKKFERALNFVEKCIDSEPRNH------EALILKGRLLIALERHTQAVIAFRTAQMLAP------YRLEIYRGLF  375 (564)
T ss_pred             hhhhhhhhHHHHHHHHHHHhccCcccc------hHHHhccHHHHhccchHHHHHHHHHHHhcch------hhHHHHHHHH
Confidence            333444477788888888776544332      2566667777777888888888887776642      2235666666


Q ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhc---------------cchhhhchh--------------hHHHHHHHHHHhcCCHH
Q 024043          160 QYAAELEQYHKSIEIYEEIARQSLN---------------NNLLKYGVK--------------GHLLNAGICQLCKGDVV  210 (273)
Q Consensus       160 ~~~~~~g~y~~A~~~~~~~~~~~~~---------------~~~~~~~~~--------------~~~~~~gl~~l~~gd~~  210 (273)
                      .+|...|++.+|.-+-..+......               ++.++-.++              .....+...++..|...
T Consensus       376 hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~  455 (564)
T KOG1174|consen  376 HSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTK  455 (564)
T ss_pred             HHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccc
Confidence            6666666666666544443211111               111110011              11122233456667777


Q ss_pred             HHHHHHHHHHHHHH----HHhhcC----HhHHHHHHHhhhccCCCchhHHHHHHHHH
Q 024043          211 AITNALERYQDIAA----SMDEED----IAKFTDVVKEFDSMTPLDPWKTTLLLRVK  259 (273)
Q Consensus       211 ~A~~~~~~~~~ll~----a~~~~d----~~~~~~~~~~~~~~~~ld~~~~~~l~~~~  259 (273)
                      .+...+++|.....    ....||    ...+++++..|...-++||...+-+.-+.
T Consensus       456 D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~  512 (564)
T KOG1174|consen  456 DIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLR  512 (564)
T ss_pred             hHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHH
Confidence            77777777761100    011122    35688899999999999999886655443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.82  E-value=1.9e-05  Score=51.93  Aligned_cols=59  Identities=15%  Similarity=0.247  Sum_probs=46.3

Q ss_pred             HHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 024043           79 AAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ  143 (273)
Q Consensus        79 ~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~  143 (273)
                      .|..+... ++++|+++|++++....      .-..++..+|.++..+|++++|+.+|++++++..
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P   62 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDP------DNPEAWYLLGRILYQQGRYDEALAYYERALELDP   62 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCST------THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            45555555 88999999998876653      3566899999999999999999999999988764

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.80  E-value=0.00011  Score=65.83  Aligned_cols=67  Identities=13%  Similarity=0.043  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043           72 AAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADM  141 (273)
Q Consensus        72 aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~  141 (273)
                      -+..+.++|.+|... +|++|+.+|++|+++...   ...+..++.++|.+|..+|++++|+.++++|+++
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd---~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPN---PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            345555666666555 666666666666665321   1122245666666666666666666666666665

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.80  E-value=0.0051  Score=57.27  Aligned_cols=165  Identities=11%  Similarity=0.106  Sum_probs=115.9

Q ss_pred             HHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC
Q 024043           69 KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV  147 (273)
Q Consensus        69 ~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~  147 (273)
                      +....+++.-++..|... ++++|+++.++|+++-+      .....+...|.++...|++.+|.++++.|-.+-..+. 
T Consensus       190 p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htP------t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR-  262 (517)
T PF12569_consen  190 PSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTP------TLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR-  262 (517)
T ss_pred             chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH-
Confidence            344567888899999777 99999999999998743      3456899999999999999999999999988865442 


Q ss_pred             cccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH--hccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-
Q 024043          148 TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS--LNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDIAA-  224 (273)
Q Consensus       148 ~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~-  224 (273)
                           .+-.+.+..+.+.|++++|.+.........  +...+...+...+....|.+|...|++..|...|....+.++ 
T Consensus       263 -----yiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~  337 (517)
T PF12569_consen  263 -----YINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDD  337 (517)
T ss_pred             -----HHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence                 345677888999999999999877653211  111222233444555679999999999888765554321111 


Q ss_pred             -----------HHhhcCHhHHHHHHHhhhccC
Q 024043          225 -----------SMDEEDIAKFTDVVKEFDSMT  245 (273)
Q Consensus       225 -----------a~~~~d~~~~~~~~~~~~~~~  245 (273)
                                 ++..+.+..+-+.+.--|.+.
T Consensus       338 ~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~  369 (517)
T PF12569_consen  338 FEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLR  369 (517)
T ss_pred             HhcccccHHHHHHhhccHHHHHHHHHHHHHhh
Confidence                       334555566666555444443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.80  E-value=0.00022  Score=59.79  Aligned_cols=106  Identities=12%  Similarity=0.189  Sum_probs=89.7

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHH
Q 024043           75 AYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQC  154 (273)
Q Consensus        75 ~~~~~~~~~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~  154 (273)
                      .|..+-..+...+|..|...|..=+.-|..   ....++++.=||+++..+|+|+.|...|..++.-|...   ..+.+.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~---s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s---~KApda  217 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPN---STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS---PKAPDA  217 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC---CCChHH
Confidence            576666677777899999999888777753   34567788999999999999999999999988766544   466789


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhccc
Q 024043          155 KQKVAQYAAELEQYHKSIEIYEEIARQSLNNN  186 (273)
Q Consensus       155 ~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~  186 (273)
                      +.++|.+...+|+.++|...|++++.+.++.+
T Consensus       218 llKlg~~~~~l~~~d~A~atl~qv~k~YP~t~  249 (262)
T COG1729         218 LLKLGVSLGRLGNTDEACATLQQVIKRYPGTD  249 (262)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence            99999999999999999999999999888875

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.79  E-value=0.00062  Score=64.13  Aligned_cols=145  Identities=14%  Similarity=0.082  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCC
Q 024043           29 YEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR  107 (273)
Q Consensus        29 ~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~  107 (273)
                      |..-..+--.++..|...++.+++..|..+|..++      +..+..|...|.++... ...+|.++|..|+.+-+..= 
T Consensus       646 ~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~------~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv-  718 (799)
T KOG4162|consen  646 WYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID------PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV-  718 (799)
T ss_pred             HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc------hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc-
Confidence            33334455567888999999999999999988776      45567888899998666 99999999999988765432 


Q ss_pred             hhHHHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          108 LSMAARYYKEIAELYESEHNIEQTIV--FFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       108 ~~~~a~~l~~lg~~~~~~g~~~~A~~--~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                           .+...+|.++...|+..-|..  +...|+.+-..      -..+|..+|.++..+|+.++|.++|+-++.-...+
T Consensus       719 -----~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~------n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~  787 (799)
T KOG4162|consen  719 -----PSMTALAELLLELGSPRLAEKRSLLSDALRLDPL------NHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN  787 (799)
T ss_pred             -----HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence                 377888999999998888887  88888887432      24789999999999999999999999998777777


Q ss_pred             chhhhc
Q 024043          186 NLLKYG  191 (273)
Q Consensus       186 ~~~~~~  191 (273)
                      |..+++
T Consensus       788 PV~pFs  793 (799)
T KOG4162|consen  788 PVLPFS  793 (799)
T ss_pred             Cccccc
Confidence            655544

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=97.79  E-value=0.018  Score=50.89  Aligned_cols=215  Identities=13%  Similarity=0.133  Sum_probs=142.1

Q ss_pred             HHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc
Q 024043           33 ADLFDKAANS--FKLAKSWDKAGATYVKLANCHLKLESK----HEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI  105 (273)
Q Consensus        33 ~~~~~~a~~~--~~~~~~~~~A~~~~~~a~~~~~~~~~~----~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~  105 (273)
                      +++|.....+  ....+++.+|..+-...+.-. ..++.    .-+|..|.-+..+|... +...-...+..-+....--
T Consensus       124 i~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i-~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLr  202 (493)
T KOG2581|consen  124 IEAYLYLLVLLFLIDQKEYKEADKISDALLASI-SIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLR  202 (493)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhc
Confidence            4455554332  223467777776655544332 22222    34666666666667555 5444444444444444434


Q ss_pred             CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          106 GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       106 g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                      .+..+.|...+-+=..|...+.|++|-..-.++.  |....+....+..+.-+|.+..-+++|..|.+++-.++...+..
T Consensus       203 hd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~  280 (493)
T KOG2581|consen  203 HDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV--YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH  280 (493)
T ss_pred             CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc--CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence            4888888888888888888788888877766644  33333333556778889999999999999999999998776654


Q ss_pred             chhhhchhhHHHHH-HHHHHhcCCHH--------HHHHHHHHHHHHHHHHhhcCHhHHHHHHHhhhccCCCchhHH
Q 024043          186 NLLKYGVKGHLLNA-GICQLCKGDVV--------AITNALERYQDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKT  252 (273)
Q Consensus       186 ~~~~~~~~~~~~~~-gl~~l~~gd~~--------~A~~~~~~~~~ll~a~~~~d~~~~~~~~~~~~~~~~ld~~~~  252 (273)
                      .  ..|......++ .++.+.+|+++        ..++++.-|-.|-.|+..||+.+|++.+.+|..--..|...+
T Consensus       281 ~--alGf~q~v~k~~ivv~ll~geiPers~F~Qp~~~ksL~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f~~D~ty~  354 (493)
T KOG2581|consen  281 A--ALGFRQQVNKLMIVVELLLGEIPERSVFRQPGMRKSLRPYFKLTQAVRLGDLKKFNETLEQFKDKFQADGTYT  354 (493)
T ss_pred             h--hhhHHHHHHHHHHHHHHHcCCCcchhhhcCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCCcch
Confidence            2  23333333333 45577888765        356778888899999999999999999999976655565544

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.77  E-value=0.0013  Score=55.89  Aligned_cols=139  Identities=17%  Similarity=0.145  Sum_probs=87.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHH------HHhcc-C-HHHHHHHH--HHHHHHHHhcCC
Q 024043           39 AANSFKLAKSWDKAGATYVKLANCHLKLESK-HEAAQAYVDAAH------CYKKT-S-SNEAISCL--EQAVNMFCDIGR  107 (273)
Q Consensus        39 a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~aa~~~~~~~~------~~~~~-~-~~eA~~~~--~~Al~~~~~~g~  107 (273)
                      .|-||....+|..|.+||++...++.+.... .-.|.++.+++.      +.... | +.---++.  +.|+. | ..+|
T Consensus        50 LgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIk-Y-se~D  127 (459)
T KOG4340|consen   50 LGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIK-Y-SEGD  127 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHh-c-cccc
Confidence            4678888889999999999888777544321 223333333322      11111 2 11111111  11111 1 1122


Q ss_pred             h------------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHH
Q 024043          108 L------------SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIY  175 (273)
Q Consensus       108 ~------------~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~  175 (273)
                      +            .+.|.++.+.|-+..+.|+|++|++-|+.|+++.   |-.   ...-.+++.++...|+|..|+++.
T Consensus       128 l~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs---Gyq---pllAYniALaHy~~~qyasALk~i  201 (459)
T KOG4340|consen  128 LPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS---GYQ---PLLAYNLALAHYSSRQYASALKHI  201 (459)
T ss_pred             CcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhc---CCC---chhHHHHHHHHHhhhhHHHHHHHH
Confidence            1            2456778888888888899999999999999874   211   233468899999999999999999


Q ss_pred             HHHHHHHhcc
Q 024043          176 EEIARQSLNN  185 (273)
Q Consensus       176 ~~~~~~~~~~  185 (273)
                      .+++.+.+.+
T Consensus       202 SEIieRG~r~  211 (459)
T KOG4340|consen  202 SEIIERGIRQ  211 (459)
T ss_pred             HHHHHhhhhc
Confidence            9998665543

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.74  E-value=0.0056  Score=57.18  Aligned_cols=85  Identities=20%  Similarity=0.228  Sum_probs=46.0

Q ss_pred             CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc
Q 024043           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE  166 (273)
Q Consensus        87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g  166 (273)
                      ++++|..++.+|..       ..+..+++.+-+.+...+++.++|++++++++..|..-      ...|..+|.++.+++
T Consensus       633 e~eraR~llakar~-------~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f------~Kl~lmlGQi~e~~~  699 (913)
T KOG0495|consen  633 ELERARDLLAKARS-------ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDF------HKLWLMLGQIEEQME  699 (913)
T ss_pred             cHHHHHHHHHHHhc-------cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCch------HHHHHHHhHHHHHHH
Confidence            45555555555433       23334555555555555566666666666666665422      244555666666666


Q ss_pred             CHHHHHHHHHHHHHHHhc
Q 024043          167 QYHKSIEIYEEIARQSLN  184 (273)
Q Consensus       167 ~y~~A~~~~~~~~~~~~~  184 (273)
                      +.+.|.+.|..-...+++
T Consensus       700 ~ie~aR~aY~~G~k~cP~  717 (913)
T KOG0495|consen  700 NIEMAREAYLQGTKKCPN  717 (913)
T ss_pred             HHHHHHHHHHhccccCCC
Confidence            666666666554444443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.74  E-value=0.0012  Score=50.24  Aligned_cols=89  Identities=17%  Similarity=0.130  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhc
Q 024043          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG  191 (273)
Q Consensus       112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~  191 (273)
                      +..+.+-|.-....|+|++|++.++.-..-|.-..   .+..+...++.+|.+.|+|++|+..+++.+...+.++.    
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~---ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~----   82 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGE---YAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN----   82 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc---ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC----
Confidence            44556666666677999999999988777776543   44578999999999999999999999999987777653    


Q ss_pred             hhhHHHHHHHHHHhcC
Q 024043          192 VKGHLLNAGICQLCKG  207 (273)
Q Consensus       192 ~~~~~~~~gl~~l~~g  207 (273)
                      +-..++..|+++..+.
T Consensus        83 vdYa~Y~~gL~~~~~~   98 (142)
T PF13512_consen   83 VDYAYYMRGLSYYEQD   98 (142)
T ss_pred             ccHHHHHHHHHHHHHh
Confidence            4456777888876654

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.74  E-value=0.0015  Score=62.22  Aligned_cols=145  Identities=16%  Similarity=0.197  Sum_probs=79.2

Q ss_pred             CCHHHHHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHH--
Q 024043           27 SKYEDAADLFDKA------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQA--   98 (273)
Q Consensus        27 ~~~~~A~~~~~~a------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~eA~~~~~~A--   98 (273)
                      |-.++|..+|.+.      -.+|...|.|++|.+.-+.--.+       +-.-..|+.++.+-.+.|.+.|+++|+++  
T Consensus       814 gMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRi-------HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~  886 (1416)
T KOG3617|consen  814 GMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRI-------HLRNTYYNYAKYLEARRDIEAALEYYEKAGV  886 (1416)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccce-------ehhhhHHHHHHHHHhhccHHHHHHHHHhcCC
Confidence            4667777777764      35666677777666533221111       11122333333333333677777777765  


Q ss_pred             --HHHHHhcCChhHH----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC------CcccHH--------
Q 024043           99 --VNMFCDIGRLSMA----------ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE------VTTSAN--------  152 (273)
Q Consensus        99 --l~~~~~~g~~~~~----------a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~------~~~~~~--------  152 (273)
                        .++++-..+...+          -..|.=-|..++..|+.+.|+.+|..|-+.|....      +...++        
T Consensus       887 hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd  966 (1416)
T KOG3617|consen  887 HAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGD  966 (1416)
T ss_pred             hHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhccc
Confidence              2222211111111          24667778889999999999999999888875421      111110        


Q ss_pred             -HHHHHHHHHHHHhcCHHHHHHHHHHH
Q 024043          153 -QCKQKVAQYAAELEQYHKSIEIYEEI  178 (273)
Q Consensus       153 -~~~~~~a~~~~~~g~y~~A~~~~~~~  178 (273)
                       .+-..+|.-|...|+..+|+..|.++
T Consensus       967 ~AAcYhlaR~YEn~g~v~~Av~FfTrA  993 (1416)
T KOG3617|consen  967 KAACYHLARMYENDGDVVKAVKFFTRA  993 (1416)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence             12233445555566666666666665

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.72  E-value=0.00055  Score=66.22  Aligned_cols=148  Identities=14%  Similarity=0.152  Sum_probs=71.3

Q ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcC
Q 024043           48 SWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH  126 (273)
Q Consensus        48 ~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g  126 (273)
                      +...|..+|.+++.+-      ..-|.+|.-+|.+|+.. |...|..||++|.++-.      +.+.+..-++..|....
T Consensus       473 ~~~~al~ali~alrld------~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa------tdaeaaaa~adtyae~~  540 (1238)
T KOG1127|consen  473 NSALALHALIRALRLD------VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA------TDAEAAAASADTYAEES  540 (1238)
T ss_pred             hHHHHHHHHHHHHhcc------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc------hhhhhHHHHHHHhhccc
Confidence            4455555555555443      22345666677777776 77777777777766522      11223333344444444


Q ss_pred             CHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhc
Q 024043          127 NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCK  206 (273)
Q Consensus       127 ~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~  206 (273)
                      +.+.|..-.-.+.+....    ......+...|..|.+.++..+|+..|+.++...+.+       -+.+..+|.+|...
T Consensus       541 ~we~a~~I~l~~~qka~a----~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD-------~n~W~gLGeAY~~s  609 (1238)
T KOG1127|consen  541 TWEEAFEICLRAAQKAPA----FACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKD-------YNLWLGLGEAYPES  609 (1238)
T ss_pred             cHHHHHHHHHHHhhhchH----HHHHhhhhhccccccCccchhhHHHHHHHHhcCCchh-------HHHHHHHHHHHHhc
Confidence            444443332222111110    1111223334445555555555555555554333332       12445556666666


Q ss_pred             CCHHHHHHHHHH
Q 024043          207 GDVVAITNALER  218 (273)
Q Consensus       207 gd~~~A~~~~~~  218 (273)
                      |.+..|.++|.+
T Consensus       610 Gry~~AlKvF~k  621 (1238)
T KOG1127|consen  610 GRYSHALKVFTK  621 (1238)
T ss_pred             CceehHHHhhhh
Confidence            666666665543

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.72  E-value=0.0026  Score=56.34  Aligned_cols=140  Identities=18%  Similarity=0.204  Sum_probs=98.3

Q ss_pred             CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHhcc-CHH
Q 024043           26 GSKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCH-LKLESKHEAAQAYVDAAHCYKKT-SSN   89 (273)
Q Consensus        26 ~~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~aa~~~~~~~~~~~~~-~~~   89 (273)
                      +.++..|..+-.++              |+++...++..+|+-+|..|..+. -++..+.       .+..+|... ++.
T Consensus       313 ~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~-------GL~hsYLA~~~~k  385 (564)
T KOG1174|consen  313 EKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYR-------GLFHSYLAQKRFK  385 (564)
T ss_pred             hhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHH-------HHHHHHHhhchHH
Confidence            46888887777665              788899999999999999988776 2444333       333333322 333


Q ss_pred             ------------------------------------HHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHH
Q 024043           90 ------------------------------------EAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIV  133 (273)
Q Consensus        90 ------------------------------------eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~  133 (273)
                                                          +|..++++++.+-+      .=..+-..+++++...|.+..++.
T Consensus       386 EA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P------~Y~~AV~~~AEL~~~Eg~~~D~i~  459 (564)
T KOG1174|consen  386 EANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINP------IYTPAVNLIAELCQVEGPTKDIIK  459 (564)
T ss_pred             HHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCC------ccHHHHHHHHHHHHhhCccchHHH
Confidence                                                44444444443211      112345677888888899999999


Q ss_pred             HHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          134 FFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       134 ~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                      .+++++..|.+.       ...+.+|+++.....|++|.++|..++...+++
T Consensus       460 LLe~~L~~~~D~-------~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~  504 (564)
T KOG1174|consen  460 LLEKHLIIFPDV-------NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS  504 (564)
T ss_pred             HHHHHHhhcccc-------HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence            999999888643       356889999999999999999999998766655

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.71  E-value=8.6e-05  Score=42.73  Aligned_cols=33  Identities=18%  Similarity=0.481  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q 024043          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEE  146 (273)
Q Consensus       114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~  146 (273)
                      ++.+||.+|...|++++|+++|++|+.+..+.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~   33 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPE   33 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence            467788888888888888888888887765543

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.71  E-value=0.002  Score=59.81  Aligned_cols=162  Identities=11%  Similarity=0.171  Sum_probs=118.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHH
Q 024043           33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMA  111 (273)
Q Consensus        33 ~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~  111 (273)
                      ..+|.++-.+|. .++|...+.+....+.-+.+-|      .++.-.|.....+ +.++|.++.+.++..-.+      .
T Consensus         8 ~~lF~~~lk~yE-~kQYkkgLK~~~~iL~k~~eHg------eslAmkGL~L~~lg~~~ea~~~vr~glr~d~~------S   74 (700)
T KOG1156|consen    8 NALFRRALKCYE-TKQYKKGLKLIKQILKKFPEHG------ESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK------S   74 (700)
T ss_pred             HHHHHHHHHHHH-HHHHHhHHHHHHHHHHhCCccc------hhHHhccchhhcccchHHHHHHHHHHhccCcc------c
Confidence            346666666665 4577777777777666333333      3444455555444 889999999988873332      3


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhc
Q 024043          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG  191 (273)
Q Consensus       112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~  191 (273)
                      -.||.-+|.++....+|++|+.||+.|+.+-...      .+++..++.+..++++|+...+.-.+.+...++       
T Consensus        75 ~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN------~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-------  141 (700)
T KOG1156|consen   75 HVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDN------LQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-------  141 (700)
T ss_pred             chhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-------
Confidence            4599999999999999999999999999884322      367999999999999999888876666543333       


Q ss_pred             hhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          192 VKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       192 ~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      ....|+...+.+...|++..|...++.|.
T Consensus       142 ~ra~w~~~Avs~~L~g~y~~A~~il~ef~  170 (700)
T KOG1156|consen  142 QRASWIGFAVAQHLLGEYKMALEILEEFE  170 (700)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34466777778888899999988888876

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.71  E-value=0.00016  Score=48.52  Aligned_cols=61  Identities=16%  Similarity=0.276  Sum_probs=52.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       119 g~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                      ..+|...+++++|++++++++.+.+.      ....+...|.++..+|++++|++.|++++...+++
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~   62 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPD------DPELWLQRARCLFQLGRYEEALEDLERALELSPDD   62 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcc------cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence            56788889999999999999999654      24668889999999999999999999998766654

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.70  E-value=0.00082  Score=62.23  Aligned_cols=128  Identities=12%  Similarity=0.160  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHH
Q 024043           73 AQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSAN  152 (273)
Q Consensus        73 a~~~~~~~~~~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~  152 (273)
                      +..+..+..||...+|...+...+..+.-+.+.|+      ++...|..+..+|+-++|..+...++..     + ....
T Consensus         8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHge------slAmkGL~L~~lg~~~ea~~~vr~glr~-----d-~~S~   75 (700)
T KOG1156|consen    8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGE------SLAMKGLTLNCLGKKEEAYELVRLGLRN-----D-LKSH   75 (700)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccch------hHHhccchhhcccchHHHHHHHHHHhcc-----C-cccc
Confidence            34566677777777899999999999887777776      8889999999999999999999988862     2 2234


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043          153 QCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY  219 (273)
Q Consensus       153 ~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~  219 (273)
                      .||.-+|.++....+|++|+++|+.++....++.       ..+.-+.+.+...+|+.........+
T Consensus        76 vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~-------qilrDlslLQ~QmRd~~~~~~tr~~L  135 (700)
T KOG1156|consen   76 VCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNL-------QILRDLSLLQIQMRDYEGYLETRNQL  135 (700)
T ss_pred             hhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            7999999999999999999999999987665552       24555666677777777665555443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.68  E-value=0.015  Score=53.74  Aligned_cols=134  Identities=13%  Similarity=0.148  Sum_probs=79.5

Q ss_pred             HHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-------------
Q 024043           77 VDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMF-------------  142 (273)
Q Consensus        77 ~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~-------------  142 (273)
                      .+-+.|..+. .+++|+.++.-+    ....     -..+.--|.++..+|+|++|+..|+.-+.-.             
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~~~----~~~~-----~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~  153 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLKGL----DRLD-----DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL  153 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHhcc----cccc-----hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence            3445565555 888888888711    1111     1244445677777788888888887642111             


Q ss_pred             -----------hccC-CcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH---hccchh-----hhchhhHHHHHHHH
Q 024043          143 -----------QNEE-VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS---LNNNLL-----KYGVKGHLLNAGIC  202 (273)
Q Consensus       143 -----------~~~~-~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~---~~~~~~-----~~~~~~~~~~~gl~  202 (273)
                                 .... .+...-+.+.+.|-+++..|+|.+|++.++++...+   +.+...     .....-+-..+.-+
T Consensus       154 a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayV  233 (652)
T KOG2376|consen  154 AVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYV  233 (652)
T ss_pred             HHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH
Confidence                       1111 122334667888899999999999999999994221   111100     01111222344556


Q ss_pred             HHhcCCHHHHHHHHHHH
Q 024043          203 QLCKGDVVAITNALERY  219 (273)
Q Consensus       203 ~l~~gd~~~A~~~~~~~  219 (273)
                      +..+|+..+|...+...
T Consensus       234 lQ~~Gqt~ea~~iy~~~  250 (652)
T KOG2376|consen  234 LQLQGQTAEASSIYVDI  250 (652)
T ss_pred             HHHhcchHHHHHHHHHH
Confidence            77789998887766654

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.68  E-value=0.00039  Score=60.01  Aligned_cols=150  Identities=20%  Similarity=0.187  Sum_probs=81.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 024043           38 KAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYK  116 (273)
Q Consensus        38 ~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~  116 (273)
                      -+|.++...|++++|+....+.       ++    ..+..-...+|... |++.|.+.++..-++    ++-    .++.
T Consensus       107 ~~A~i~~~~~~~~~AL~~l~~~-------~~----lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~----~eD----~~l~  167 (290)
T PF04733_consen  107 LAATILFHEGDYEEALKLLHKG-------GS----LELLALAVQILLKMNRPDLAEKELKNMQQI----DED----SILT  167 (290)
T ss_dssp             HHHHHHCCCCHHHHHHCCCTTT-------TC----HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC----SCC----HHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcc-------Cc----ccHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCc----HHHH
Confidence            3456666677777766665542       12    12333345566555 777777666554322    221    2344


Q ss_pred             HHHHHHHhc----CCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhch
Q 024043          117 EIAELYESE----HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGV  192 (273)
Q Consensus       117 ~lg~~~~~~----g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~  192 (273)
                      +++..+...    +.+.+|.-.|++-.+.+.      ....+++..|.++..+|+|++|.+.+++++...++       .
T Consensus       168 qLa~awv~l~~g~e~~~~A~y~f~El~~~~~------~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-------~  234 (290)
T PF04733_consen  168 QLAEAWVNLATGGEKYQDAFYIFEELSDKFG------STPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-------D  234 (290)
T ss_dssp             HHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-------H
T ss_pred             HHHHHHHHHHhCchhHHHHHHHHHHHHhccC------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-------C
Confidence            444444432    356777777766433321      12355777788888888888888887777533222       2


Q ss_pred             hhHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 024043          193 KGHLLNAGICQLCKGDV-VAITNALERY  219 (273)
Q Consensus       193 ~~~~~~~gl~~l~~gd~-~~A~~~~~~~  219 (273)
                      .+.+.+++.|....|+. +.+.+.+++.
T Consensus       235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL  262 (290)
T PF04733_consen  235 PDTLANLIVCSLHLGKPTEAAERYLSQL  262 (290)
T ss_dssp             HHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence            34566777777777765 4455555553

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.67  E-value=0.0081  Score=52.12  Aligned_cols=107  Identities=6%  Similarity=0.008  Sum_probs=66.8

Q ss_pred             HHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 024043           64 LKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMF  142 (273)
Q Consensus        64 ~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~  142 (273)
                      ...+++.+...++ ++|.-+... ++..|+.+|..|++.-..+      =.++.+-|.+|..+|+-..|+.-+.+.+++-
T Consensus        30 ~~~~~~advekhl-ElGk~lla~~Q~sDALt~yHaAve~dp~~------Y~aifrRaT~yLAmGksk~al~Dl~rVlelK  102 (504)
T KOG0624|consen   30 ESTASPADVEKHL-ELGKELLARGQLSDALTHYHAAVEGDPNN------YQAIFRRATVYLAMGKSKAALQDLSRVLELK  102 (504)
T ss_pred             HhcCCHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHcCCchh------HHHHHHHHHHHhhhcCCccchhhHHHHHhcC
Confidence            3445555555554 355544333 7777777777777643322      1255666777777777777777777777663


Q ss_pred             hccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 024043          143 QNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSL  183 (273)
Q Consensus       143 ~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~  183 (273)
                      .      .-..+..+-|.++.++|++++|..-|..++...+
T Consensus       103 p------DF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~  137 (504)
T KOG0624|consen  103 P------DFMAARIQRGVVLLKQGELEQAEADFDQVLQHEP  137 (504)
T ss_pred             c------cHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCC
Confidence            2      2234566777777778888888877777764433

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.67  E-value=0.00079  Score=53.99  Aligned_cols=125  Identities=18%  Similarity=0.207  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHhhccccCCCCCHHHHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 024043            8 AEEFEKKAEKKLNGWGLFGSKYEDAAD---LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYK   84 (273)
Q Consensus         8 a~~l~~~Aek~~k~~~~~~~~~~~A~~---~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~   84 (273)
                      -++||.+-||.+..     ..-+++..   -...-|+-+-.-|+|++|..-|..|+++...... ...+..|.+-|.+..
T Consensus        72 eEeLmae~E~i~~d-----eek~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~-e~rsIly~Nraaa~i  145 (271)
T KOG4234|consen   72 EEELMAEIEKIFSD-----EEKDKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST-EERSILYSNRAAALI  145 (271)
T ss_pred             HHHHHHHHHHhcCc-----HHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH-HHHHHHHhhhHHHHH
Confidence            45788888886651     12222222   2333477777789999999999999998876544 556677888888887


Q ss_pred             cc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043           85 KT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (273)
Q Consensus        85 ~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~  144 (273)
                      ++ ..+.||+-+.+|+++.....      +++.+-+.+|+++..|++|++-|.+.+++-..
T Consensus       146 Kl~k~e~aI~dcsKaiel~pty~------kAl~RRAeayek~ek~eealeDyKki~E~dPs  200 (271)
T KOG4234|consen  146 KLRKWESAIEDCSKAIELNPTYE------KALERRAEAYEKMEKYEEALEDYKKILESDPS  200 (271)
T ss_pred             HhhhHHHHHHHHHhhHhcCchhH------HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcc
Confidence            77 78999999999999876543      37778889999999999999999998887543

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=97.66  E-value=0.0018  Score=61.03  Aligned_cols=106  Identities=15%  Similarity=0.246  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHhcc-CHHHHHHHHHH------HHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----
Q 024043           72 AAQAYVDAAHCYKKT-SSNEAISCLEQ------AVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAAD----  140 (273)
Q Consensus        72 aa~~~~~~~~~~~~~-~~~eA~~~~~~------Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~----  140 (273)
                      ....|..+|.+|.+. +|++|++||++      |+++.+ ..-|...-+.-..-|..++..|+++.|+.+|-+|-.    
T Consensus       660 k~elydkagdlfeki~d~dkale~fkkgdaf~kaielar-fafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka  738 (1636)
T KOG3616|consen  660 KGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELAR-FAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA  738 (1636)
T ss_pred             hhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHH-hhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH
Confidence            445678889999888 99999999864      454433 344555566666778888888999999988865432    


Q ss_pred             ---------------HHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 024043          141 ---------------MFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI  178 (273)
Q Consensus       141 ---------------~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~  178 (273)
                                     +.....+...+...+-.+++-|...|+|+.|-++|.++
T Consensus       739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~  791 (1636)
T KOG3616|consen  739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA  791 (1636)
T ss_pred             HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc
Confidence                           23323333333445556667777778888888877766

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.66  E-value=0.0016  Score=58.50  Aligned_cols=150  Identities=20%  Similarity=0.210  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHhhc-cccC-CCCCHHHHH---H-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024043            8 AEEFEKKAEKKLN-GWGL-FGSKYEDAA---D-LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAH   81 (273)
Q Consensus         8 a~~l~~~Aek~~k-~~~~-~~~~~~~A~---~-~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~   81 (273)
                      +..+++-+++.+. |+.. ..+....+-   . +-.-...++...++++.|++.+++...-.     +.    +..-++.
T Consensus       138 ~~~fi~~~~~~~~~G~~lG~~~~i~~~t~~~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~-----pe----v~~~LA~  208 (395)
T PF09295_consen  138 LNNFIKLFPKLFERGWKLGSDPEIQVPTIVNNYLVDTLLKYLSLTQRYDEAIELLEKLRERD-----PE----VAVLLAR  208 (395)
T ss_pred             HHHHHHHHHHHhhcccccCCCCccCCCCCcchHHHHHHHHHHhhcccHHHHHHHHHHHHhcC-----Cc----HHHHHHH
Confidence            4557777777775 5421 111111110   1 11123466777889999998888855332     21    2334677


Q ss_pred             HHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHH
Q 024043           82 CYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQ  160 (273)
Q Consensus        82 ~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~  160 (273)
                      ++... +..+|++.+.+++...+..      +..+..-+..+...++++.|++..++|+.+..      ....+|..++.
T Consensus       209 v~l~~~~E~~AI~ll~~aL~~~p~d------~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP------~~f~~W~~La~  276 (395)
T PF09295_consen  209 VYLLMNEEVEAIRLLNEALKENPQD------SELLNLQAEFLLSKKKYELALEIAKKAVELSP------SEFETWYQLAE  276 (395)
T ss_pred             HHHhcCcHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc------hhHHHHHHHHH
Confidence            77666 7889999999999543322      67888889999999999999999999999974      44688999999


Q ss_pred             HHHHhcCHHHHHHHHHHH
Q 024043          161 YAAELEQYHKSIEIYEEI  178 (273)
Q Consensus       161 ~~~~~g~y~~A~~~~~~~  178 (273)
                      +|..+|+|++|+-.+...
T Consensus       277 ~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  277 CYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHhcCCHHHHHHHHhcC
Confidence            999999999999776543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.66  E-value=0.0071  Score=50.63  Aligned_cols=174  Identities=17%  Similarity=0.121  Sum_probs=90.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 024043           39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKE  117 (273)
Q Consensus        39 a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~  117 (273)
                      ++.+|...+++++|.....+...+           .+...-..|+.+. +.+-|..-.++..++-.+.        ++..
T Consensus       114 aa~i~~~~~~~deAl~~~~~~~~l-----------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~--------tLtQ  174 (299)
T KOG3081|consen  114 AAIIYMHDGDFDEALKALHLGENL-----------EAAALNVQILLKMHRFDLAEKELKKMQQIDEDA--------TLTQ  174 (299)
T ss_pred             hhHHhhcCCChHHHHHHHhccchH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--------HHHH
Confidence            455555566666655544442211           1111112233333 5555665555555443322        5556


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHhccCC-cccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHH
Q 024043          118 IAELYESEHNIEQTIVFFEKAADMFQNEEV-TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHL  196 (273)
Q Consensus       118 lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~-~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~  196 (273)
                      +|..|...   -..-+-++.|.=+|++... ...-..+++..+.|+..+|+|++|...++.++.+..+++       +.+
T Consensus       175 LA~awv~l---a~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dp-------etL  244 (299)
T KOG3081|consen  175 LAQAWVKL---ATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDP-------ETL  244 (299)
T ss_pred             HHHHHHHH---hccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCH-------HHH
Confidence            66666554   0001113344444444322 222345677888888899999999999988886655543       456


Q ss_pred             HHHHHHHHhcCCH-HHHHHHHHHHH------HHHHHHhhcCHhHHHHHHHhhh
Q 024043          197 LNAGICQLCKGDV-VAITNALERYQ------DIAASMDEEDIAKFTDVVKEFD  242 (273)
Q Consensus       197 ~~~gl~~l~~gd~-~~A~~~~~~~~------~ll~a~~~~d~~~~~~~~~~~~  242 (273)
                      .|+..+-+..|-. +--.+.+.+..      .+++.++.. ...|.+.+.+|+
T Consensus       245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk~~~ek-eaeFDrl~~qy~  296 (299)
T KOG3081|consen  245 ANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVKHLNEK-EAEFDRLVLQYD  296 (299)
T ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHHHHHHH-HHHHHHHHHHhc
Confidence            7776666666633 22333444332      444443222 345666666664

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.65  E-value=0.0084  Score=52.04  Aligned_cols=97  Identities=10%  Similarity=0.023  Sum_probs=62.9

Q ss_pred             HHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHH---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC
Q 024043           78 DAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMA---------ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV  147 (273)
Q Consensus        78 ~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~---------a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~  147 (273)
                      +-|.++.+. .+++|..-|+..+..-...|....+         -..+......+...|++..|+++..+-+++-     
T Consensus       111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-----  185 (504)
T KOG0624|consen  111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-----  185 (504)
T ss_pred             HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-----
Confidence            334445444 6778888888777655443322211         1223333333344588888888888888774     


Q ss_pred             cccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 024043          148 TTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR  180 (273)
Q Consensus       148 ~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~  180 (273)
                       .+.+..+..-+.+|+..|++..||.-++.+..
T Consensus       186 -~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~ask  217 (504)
T KOG0624|consen  186 -PWDASLRQARAKCYIAEGEPKKAIHDLKQASK  217 (504)
T ss_pred             -cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence             35566777888999999999999998887753

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.64  E-value=0.0015  Score=61.59  Aligned_cols=124  Identities=18%  Similarity=0.119  Sum_probs=98.7

Q ss_pred             HHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHH
Q 024043           78 DAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQ  156 (273)
Q Consensus        78 ~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~  156 (273)
                      .++..+... ..++|..|..+|..++      ...+..++..|.++...|...+|.+.|.-|+.+-+..      ..++.
T Consensus       655 laa~~~~~~~~~~~a~~CL~Ea~~~~------~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h------v~s~~  722 (799)
T KOG4162|consen  655 LAADLFLLSGNDDEARSCLLEASKID------PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH------VPSMT  722 (799)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHhcc------hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC------cHHHH
Confidence            445555555 6677888888887766      3456789999999999999999999999999886432      36788


Q ss_pred             HHHHHHHHhcCHHHHHH--HHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          157 KVAQYAAELEQYHKSIE--IYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       157 ~~a~~~~~~g~y~~A~~--~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      .+|.++.+.|+..-|..  ++..++...+.       ..++|+.+|.+.-..||..+|.+||+...
T Consensus       723 Ala~~lle~G~~~la~~~~~L~dalr~dp~-------n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~  781 (799)
T KOG4162|consen  723 ALAELLLELGSPRLAEKRSLLSDALRLDPL-------NHEAWYYLGEVFKKLGDSKQAAECFQAAL  781 (799)
T ss_pred             HHHHHHHHhCCcchHHHHHHHHHHHhhCCC-------CHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence            99999999998877776  77777654433       34688999999999999999999998764

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.60  E-value=0.0047  Score=45.28  Aligned_cols=109  Identities=12%  Similarity=0.114  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHHHhcCC---hh---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043           71 EAAQAYVDAAHCYKKT---SSNEAISCLEQAVNMFCDIGR---LS---MAARYYKEIAELYESEHNIEQTIVFFEKAADM  141 (273)
Q Consensus        71 ~aa~~~~~~~~~~~~~---~~~eA~~~~~~Al~~~~~~g~---~~---~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~  141 (273)
                      ..+.+|..++..-++.   -|++|...|++|.++.+..-.   ++   --|-|+..++..+..+|+|++++....+|+-+
T Consensus         5 eVa~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y   84 (144)
T PF12968_consen    5 EVAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY   84 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            4455666666655544   788888888888888765421   11   23778999999999999999999999999999


Q ss_pred             HhccCCc-ccHH----HHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043          142 FQNEEVT-TSAN----QCKQKVAQYAAELEQYHKSIEIYEEIA  179 (273)
Q Consensus       142 ~~~~~~~-~~~~----~~~~~~a~~~~~~g~y~~A~~~~~~~~  179 (273)
                      |..-|.. ....    .+-.+-|..+..+|++++|+..|+.+.
T Consensus        85 FNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag  127 (144)
T PF12968_consen   85 FNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG  127 (144)
T ss_dssp             HHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence            9765542 2222    223445667788999999999999986

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.59  E-value=0.0017  Score=53.52  Aligned_cols=101  Identities=14%  Similarity=0.127  Sum_probs=75.3

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc-------CChhHHHHHH
Q 024043           45 LAKSWDKAGATYVKLANCHLKLE-SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI-------GRLSMAARYY  115 (273)
Q Consensus        45 ~~~~~~~A~~~~~~a~~~~~~~~-~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~-------g~~~~~a~~l  115 (273)
                      ....+++|++.|..|+-++.-.+ .+...|..+..++-+|+.. +.+....++++|++.|.+.       +.......++
T Consensus        89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~  168 (214)
T PF09986_consen   89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL  168 (214)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence            34467777777777777776444 5667778888888888877 6666666666666666542       3455668899


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 024043          116 KEIAELYESEHNIEQTIVFFEKAADMFQNE  145 (273)
Q Consensus       116 ~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~  145 (273)
                      .-+|.+....|++++|+.+|.+.+..-...
T Consensus       169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s  198 (214)
T PF09986_consen  169 YLIGELNRRLGNYDEAKRWFSRVIGSKKAS  198 (214)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence            999999999999999999999988765443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.58  E-value=0.0017  Score=61.05  Aligned_cols=116  Identities=9%  Similarity=0.028  Sum_probs=91.4

Q ss_pred             cCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHh
Q 024043           86 TSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL  165 (273)
Q Consensus        86 ~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~  165 (273)
                      .++.++..+++.+++++.-.      -.+|...|-+..+++++..|+++|.+.+.+-.      ..+..|++++..|...
T Consensus       499 ~~fs~~~~hle~sl~~nplq------~~~wf~~G~~ALqlek~q~av~aF~rcvtL~P------d~~eaWnNls~ayi~~  566 (777)
T KOG1128|consen  499 KDFSEADKHLERSLEINPLQ------LGTWFGLGCAALQLEKEQAAVKAFHRCVTLEP------DNAEAWNNLSTAYIRL  566 (777)
T ss_pred             hhHHHHHHHHHHHhhcCccc------hhHHHhccHHHHHHhhhHHHHHHHHHHhhcCC------CchhhhhhhhHHHHHH
Confidence            38999999999999987533      34899999999999999999999999887743      2347899999999999


Q ss_pred             cCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          166 EQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       166 g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      |+-.+|...+.+++.-..+       .-..+-|-.++....|..++|.+++.+-.
T Consensus       567 ~~k~ra~~~l~EAlKcn~~-------~w~iWENymlvsvdvge~eda~~A~~rll  614 (777)
T KOG1128|consen  567 KKKKRAFRKLKEALKCNYQ-------HWQIWENYMLVSVDVGEFEDAIKAYHRLL  614 (777)
T ss_pred             hhhHHHHHHHHHHhhcCCC-------CCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence            9999999999999743322       22344455566667788888888877754

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.58  E-value=0.0041  Score=49.96  Aligned_cols=103  Identities=17%  Similarity=0.162  Sum_probs=75.2

Q ss_pred             HHHHHHHHH-hccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHH
Q 024043           75 AYVDAAHCY-KKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ  153 (273)
Q Consensus        75 ~~~~~~~~~-~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~  153 (273)
                      .+-.-|+-+ ...+|.+|..-|..|+++...... .....+|.+-|-++.+++..+.|+.-+.+|+++...      -..
T Consensus        97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~-e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt------y~k  169 (271)
T KOG4234|consen   97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTST-EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT------YEK  169 (271)
T ss_pred             HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH-HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch------hHH
Confidence            333344433 344888888888888888766543 455667888888888888888888888888888542      235


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 024043          154 CKQKVAQYAAELEQYHKSIEIYEEIARQSLN  184 (273)
Q Consensus       154 ~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~  184 (273)
                      ++.+.|.+|.++.+|++|++-|.++....++
T Consensus       170 Al~RRAeayek~ek~eealeDyKki~E~dPs  200 (271)
T KOG4234|consen  170 ALERRAEAYEKMEKYEEALEDYKKILESDPS  200 (271)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHhCcc
Confidence            6777788888888888888888888654443

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.57  E-value=0.00048  Score=61.87  Aligned_cols=68  Identities=21%  Similarity=0.168  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHH
Q 024043           31 DAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNM  101 (273)
Q Consensus        31 ~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~  101 (273)
                      .-.+.+...|..|...|+|++|+.+|++|+++   ..+...+..++.++|.||..+ ++++|+.++++|+++
T Consensus        73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34678888999999999999999999999987   444444457899999999888 999999999999997

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.56  E-value=0.0034  Score=56.85  Aligned_cols=172  Identities=15%  Similarity=0.167  Sum_probs=102.5

Q ss_pred             HHHhccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-C-------------
Q 024043           81 HCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-E-------------  146 (273)
Q Consensus        81 ~~~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~-~-------------  146 (273)
                      .+.++.++..-+++-++|++++...-+      +|.-+++=  ......+|.++|++|++.-+.. +             
T Consensus       177 ~AWRERnp~aRIkaA~eALei~pdCAd------AYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e  248 (539)
T PF04184_consen  177 KAWRERNPQARIKAAKEALEINPDCAD------AYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWE  248 (539)
T ss_pred             HHHhcCCHHHHHHHHHHHHHhhhhhhH------HHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhh
Confidence            344455788888888888888765533      44333321  1134677778888877765431 0             


Q ss_pred             -----CcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH-
Q 024043          147 -----VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ-  220 (273)
Q Consensus       147 -----~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~-  220 (273)
                           +..-...+..++|.+..++|+.++|+++|+..+...+..     +.-....++..++|..+.+.+++..+.+|. 
T Consensus       249 ~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~-----~~l~IrenLie~LLelq~Yad~q~lL~kYdD  323 (539)
T PF04184_consen  249 AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL-----DNLNIRENLIEALLELQAYADVQALLAKYDD  323 (539)
T ss_pred             hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc-----chhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence                 000113455778888889999999999999887543321     112244566778888888888888888887 


Q ss_pred             -------------HHHHHHhhcCH---h---------HHHHHHHhhhccCCCchhHHHHHHHHHHhcccc
Q 024043          221 -------------DIAASMDEEDI---A---------KFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAK  265 (273)
Q Consensus       221 -------------~ll~a~~~~d~---~---------~~~~~~~~~~~~~~ld~~~~~~l~~~~~~~~~~  265 (273)
                                   .|+++-..+|.   +         .-..++.-....-..+|..-+-|+..|..+.|+
T Consensus       324 i~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPP  393 (539)
T PF04184_consen  324 ISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPP  393 (539)
T ss_pred             ccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCCh
Confidence                         34443323321   0         111122222223335666677888888776653

The molecular function of this protein is uncertain.

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.56  E-value=0.0022  Score=59.70  Aligned_cols=147  Identities=14%  Similarity=0.132  Sum_probs=108.0

Q ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcC
Q 024043           48 SWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH  126 (273)
Q Consensus        48 ~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g  126 (273)
                      .++.|...|.+|-.       ..+..+++..-+.+-+.+ ..++|+.++++++..|.....      .+..+|++++..+
T Consensus       633 e~eraR~llakar~-------~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~K------l~lmlGQi~e~~~  699 (913)
T KOG0495|consen  633 ELERARDLLAKARS-------ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHK------LWLMLGQIEEQME  699 (913)
T ss_pred             cHHHHHHHHHHHhc-------cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHH------HHHHHhHHHHHHH
Confidence            44544444444432       344566777777776666 889999999999999886654      8999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhc
Q 024043          127 NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCK  206 (273)
Q Consensus       127 ~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~  206 (273)
                      +.+.|.+.|..-+....      ...-.|..++.+-.+.|...+|..+++++..+.+++.       ..++...-.-+..
T Consensus       700 ~ie~aR~aY~~G~k~cP------~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~-------~lwle~Ir~ElR~  766 (913)
T KOG0495|consen  700 NIEMAREAYLQGTKKCP------NSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNA-------LLWLESIRMELRA  766 (913)
T ss_pred             HHHHHHHHHHhccccCC------CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcc-------hhHHHHHHHHHHc
Confidence            99999999976554432      3345688899999999999999999999976666553       2344455556788


Q ss_pred             CCHHHHHHHHHHHH
Q 024043          207 GDVVAITNALERYQ  220 (273)
Q Consensus       207 gd~~~A~~~~~~~~  220 (273)
                      |....|.....+..
T Consensus       767 gn~~~a~~lmakAL  780 (913)
T KOG0495|consen  767 GNKEQAELLMAKAL  780 (913)
T ss_pred             CCHHHHHHHHHHHH
Confidence            98888877666543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.55  E-value=0.00011  Score=48.61  Aligned_cols=55  Identities=20%  Similarity=0.307  Sum_probs=45.7

Q ss_pred             hcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 024043          124 SEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN  184 (273)
Q Consensus       124 ~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~  184 (273)
                      ..|++++|+..|++++..++..      ..++..+|.++...|++++|...++++....++
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~   57 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDN------PEARLLLAQCYLKQGQYDEAEELLERLLKQDPD   57 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTS------HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred             hccCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            4599999999999999987643      467889999999999999999999998754444

...

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=97.53  E-value=0.006  Score=57.70  Aligned_cols=112  Identities=23%  Similarity=0.355  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHH-----------
Q 024043           34 DLFDKAANSFKLAKSWDKAGATYVK------LANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCL-----------   95 (273)
Q Consensus        34 ~~~~~a~~~~~~~~~~~~A~~~~~~------a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~-----------   95 (273)
                      ++|.+||.+|....++++|++||.+      |+++.+ ..-|......-..-|.-.... +++.|+.+|           
T Consensus       662 elydkagdlfeki~d~dkale~fkkgdaf~kaielar-fafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaie  740 (1636)
T KOG3616|consen  662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELAR-FAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIE  740 (1636)
T ss_pred             HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHH-hhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHH
Confidence            5777888888888899999887654      444432 111222222222222222222 344444433           


Q ss_pred             --------HHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHH------HHHHHhccC
Q 024043           96 --------EQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEK------AADMFQNEE  146 (273)
Q Consensus        96 --------~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~------Al~~~~~~~  146 (273)
                              .+|+.+.....|...+...|-.++..|...|+|+.|-+.|.+      |+.+|.+.+
T Consensus       741 aai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~  805 (1636)
T KOG3616|consen  741 AAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAG  805 (1636)
T ss_pred             HHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccc
Confidence                    344555555555556666777888888888999988887754      677776655

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.50  E-value=0.00024  Score=40.03  Aligned_cols=32  Identities=16%  Similarity=0.366  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 024043          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQ  143 (273)
Q Consensus       112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~  143 (273)
                      |.++.++|.+|..+|++++|+.+|++|+++.+
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p   32 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence            45777888888888888888888888887754

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.48  E-value=0.0033  Score=56.59  Aligned_cols=130  Identities=14%  Similarity=0.058  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCccc
Q 024043           71 EAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTS  150 (273)
Q Consensus        71 ~aa~~~~~~~~~~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~  150 (273)
                      +.+.-|-.+-..|...++++|...++.-+.-.+  ++    ...+.-.+.++...+++.+|.+.+++|+.+....     
T Consensus       305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P--~N----~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~-----  373 (484)
T COG4783         305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQP--DN----PYYLELAGDILLEANKAKEAIERLKKALALDPNS-----  373 (484)
T ss_pred             chHHHHHHHHHHHHhcccchHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-----
Confidence            334444444444555577777777777443333  22    3467778999999999999999999999987543     


Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043          151 ANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY  219 (273)
Q Consensus       151 ~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~  219 (273)
                       .-...++|..+.+.|++.+|+..+.+.....+.++       ..|..++-+|-.+||..++..+..+.
T Consensus       374 -~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp-------~~w~~LAqay~~~g~~~~a~~A~AE~  434 (484)
T COG4783         374 -PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDP-------NGWDLLAQAYAELGNRAEALLARAEG  434 (484)
T ss_pred             -cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc-------hHHHHHHHHHHHhCchHHHHHHHHHH
Confidence             35578999999999999999999999876666654       24455667778888888887777664

>PRK15331 chaperone protein SicA; Provisional

Probab=97.47  E-value=0.0012  Score=51.47  Aligned_cols=94  Identities=13%  Similarity=0.135  Sum_probs=68.5

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHH
Q 024043           75 AYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQC  154 (273)
Q Consensus        75 ~~~~~~~~~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~  154 (273)
                      .|..+-+.|..+++++|...|+-...+-.  .+    .+.+..+|.++...++|++|+..|..|..+-..+..|      
T Consensus        40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~--~n----~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p------  107 (165)
T PRK15331         40 LYAHAYEFYNQGRLDEAETFFRFLCIYDF--YN----PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP------  107 (165)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCc--Cc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc------
Confidence            34444455555588888888775544221  11    3478899999999999999999999988876544333      


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHH
Q 024043          155 KQKVAQYAAELEQYHKSIEIYEEIAR  180 (273)
Q Consensus       155 ~~~~a~~~~~~g~y~~A~~~~~~~~~  180 (273)
                      ....|.|+..+|+...|..+|+.++.
T Consensus       108 ~f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        108 VFFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             cchHHHHHHHhCCHHHHHHHHHHHHh
Confidence            55678899999999999999988865

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=97.47  E-value=0.0028  Score=45.00  Aligned_cols=80  Identities=16%  Similarity=0.142  Sum_probs=67.0

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 024043           44 KLAKSWDKAGATYVKLANCHLKLESKH---EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIA  119 (273)
Q Consensus        44 ~~~~~~~~A~~~~~~a~~~~~~~~~~~---~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg  119 (273)
                      ...|+|..|.+.+.+..+.....++..   ....++.+++.++... ++++|+..+++|+.+.++.+|....+.++.-+.
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~~   88 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWLA   88 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence            346889999999999888887666544   5666677888888777 999999999999999999999999999988887


Q ss_pred             HHHH
Q 024043          120 ELYE  123 (273)
Q Consensus       120 ~~~~  123 (273)
                      .+..
T Consensus        89 ~l~~   92 (94)
T PF12862_consen   89 NLLK   92 (94)
T ss_pred             HHhh
Confidence            7654

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=97.41  E-value=0.037  Score=44.19  Aligned_cols=128  Identities=12%  Similarity=0.034  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCH
Q 024043           50 DKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNI  128 (273)
Q Consensus        50 ~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~  128 (273)
                      .+-++-++.-++-++......+...++..+|..|.+. +.++|+++|.++.+..   -.+......+.++-.+....+++
T Consensus        13 ~~~~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~---~~~~~~id~~l~~irv~i~~~d~   89 (177)
T PF10602_consen   13 AEELEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYC---TSPGHKIDMCLNVIRVAIFFGDW   89 (177)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc---CCHHHHHHHHHHHHHHHHHhCCH
Confidence            3444555555566665666677788899999999887 9999999999977753   33444555555566666666999


Q ss_pred             HHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 024043          129 EQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR  180 (273)
Q Consensus       129 ~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~  180 (273)
                      .....+..+|-.+.+..++....+....--|..+...++|.+|.+.|-.+..
T Consensus        90 ~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen   90 SHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence            9999999999999988776444444455556667778999999999988853

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.39  E-value=0.0033  Score=56.46  Aligned_cols=110  Identities=17%  Similarity=0.149  Sum_probs=87.2

Q ss_pred             CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc
Q 024043           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE  166 (273)
Q Consensus        87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g  166 (273)
                      ++++|++.+++-....     +    .+...++.++...++..+|++...+++.....+      ...+..-+..+...+
T Consensus       184 ~~~~ai~lle~L~~~~-----p----ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d------~~LL~~Qa~fLl~k~  248 (395)
T PF09295_consen  184 RYDEAIELLEKLRERD-----P----EVAVLLARVYLLMNEEVEAIRLLNEALKENPQD------SELLNLQAEFLLSKK  248 (395)
T ss_pred             cHHHHHHHHHHHHhcC-----C----cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcC
Confidence            7788888777754332     2    245568888888899999999999999544322      677888899999999


Q ss_pred             CHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHH
Q 024043          167 QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER  218 (273)
Q Consensus       167 ~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~  218 (273)
                      +|+.|+++.+++....+.+       ...|+.++.||...||++.|.-+++-
T Consensus       249 ~~~lAL~iAk~av~lsP~~-------f~~W~~La~~Yi~~~d~e~ALlaLNs  293 (395)
T PF09295_consen  249 KYELALEIAKKAVELSPSE-------FETWYQLAECYIQLGDFENALLALNS  293 (395)
T ss_pred             CHHHHHHHHHHHHHhCchh-------HHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence            9999999999998655543       34678899999999999999888874

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.37  E-value=0.024  Score=52.37  Aligned_cols=73  Identities=18%  Similarity=0.227  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc----cC-----CcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 024043          113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQN----EE-----VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSL  183 (273)
Q Consensus       113 ~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~----~~-----~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~  183 (273)
                      ..+.|.+-++...|+|.+|++.+++|+.+-++    ..     -....+.+..+++-++..+|+-.+|.++|...+....
T Consensus       176 el~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~  255 (652)
T KOG2376|consen  176 ELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP  255 (652)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC
Confidence            45778888888889999999999999666542    11     1234567889999999999999999999999875544


Q ss_pred             cc
Q 024043          184 NN  185 (273)
Q Consensus       184 ~~  185 (273)
                      -+
T Consensus       256 ~D  257 (652)
T KOG2376|consen  256 AD  257 (652)
T ss_pred             CC
Confidence            33

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.35  E-value=0.00052  Score=38.49  Aligned_cols=32  Identities=28%  Similarity=0.385  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 024043          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQ  143 (273)
Q Consensus       112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~  143 (273)
                      |.++..+|.++..+|++++|+++|++|+.+.+
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p   32 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence            45677777777777777777777777777654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=97.32  E-value=0.0058  Score=51.55  Aligned_cols=92  Identities=22%  Similarity=0.227  Sum_probs=83.8

Q ss_pred             CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc
Q 024043           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE  166 (273)
Q Consensus        87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g  166 (273)
                      .....++++.+|.+.|...+..+....+...+|.-|...|++++|+.+|+.+...|+.+|...-...++..+-.|...+|
T Consensus       153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~  232 (247)
T PF11817_consen  153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG  232 (247)
T ss_pred             hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence            44678999999999999999999999999999999999999999999999999999999998888899999999999999


Q ss_pred             CHHHHHHHHHHH
Q 024043          167 QYHKSIEIYEEI  178 (273)
Q Consensus       167 ~y~~A~~~~~~~  178 (273)
                      +.+..+.+.-+.
T Consensus       233 ~~~~~l~~~leL  244 (247)
T PF11817_consen  233 DVEDYLTTSLEL  244 (247)
T ss_pred             CHHHHHHHHHHH
Confidence            998888765443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.31  E-value=0.094  Score=47.65  Aligned_cols=186  Identities=16%  Similarity=0.045  Sum_probs=125.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHH
Q 024043           27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESK-HEAAQAYVDAAHCYKKT--SSNEAISCLEQAVNMFC  103 (273)
Q Consensus        27 ~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~aa~~~~~~~~~~~~~--~~~eA~~~~~~Al~~~~  103 (273)
                      |+--+|..-..-...+|...++.+.|....++|..+...+++. ...-.++.-++.+|...  .+..+....++|+++..
T Consensus        41 s~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq  120 (629)
T KOG2300|consen   41 SFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQ  120 (629)
T ss_pred             hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhc
Confidence            6667788777777788999999999999999999999999976 55556667778888655  67788889999999864


Q ss_pred             hcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHH------HHHHHhcCHH---HHHHH
Q 024043          104 DIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVA------QYAAELEQYH---KSIEI  174 (273)
Q Consensus       104 ~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a------~~~~~~g~y~---~A~~~  174 (273)
                        +.+--..+.+..+++++....++.-|++...--.    ...++.  ...+.++.      .++...-+..   ++...
T Consensus       121 --~~p~wsckllfQLaql~~idkD~~sA~elLavga----~sAd~~--~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~  192 (629)
T KOG2300|consen  121 --SVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGA----ESADHI--CFPYLRMLFTLSMLMLLIMERDDYDVEKLLQR  192 (629)
T ss_pred             --CCchhhHHHHHHHHHHHhhhccchhHHHHHhccc----cccchh--hhHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence              5567888999999999999999999998842211    111211  12222222      2222222333   33344


Q ss_pred             HHHHHHHHhccchhhhchhhHHHHHHHH-HHhcCCHHHHHHHHHHHH
Q 024043          175 YEEIARQSLNNNLLKYGVKGHLLNAGIC-QLCKGDVVAITNALERYQ  220 (273)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~gl~-~l~~gd~~~A~~~~~~~~  220 (273)
                      ..++.....+++..+-..+..|+++-++ |+..|....++.++++.+
T Consensus       193 ~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ  239 (629)
T KOG2300|consen  193 CGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQ  239 (629)
T ss_pred             HHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHH
Confidence            4444344444443333344555566555 577888888888887765

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=97.27  E-value=0.19  Score=48.14  Aligned_cols=164  Identities=15%  Similarity=0.086  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-c-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCC
Q 024043           50 DKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK-T-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHN  127 (273)
Q Consensus        50 ~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~-~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~  127 (273)
                      .-|+.|++-+..  ...=.+...+.++.++|.++.. . ++++|..++.+++.+..+.+-.+.--.+..-++.++...+.
T Consensus        38 ~~ai~CL~~~~~--~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~  115 (608)
T PF10345_consen   38 ATAIKCLEAVLK--QFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNP  115 (608)
T ss_pred             HHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCH
Confidence            345555555443  1112577888999999999864 4 99999999999999998866555556667777999999665


Q ss_pred             HHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH--hccchhhhchhhHHHHHHHHHHh
Q 024043          128 IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS--LNNNLLKYGVKGHLLNAGICQLC  205 (273)
Q Consensus       128 ~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~gl~~l~  205 (273)
                      .. |.....++++.++..+...+.-.+..--.......+++..|++.++......  .+++..   ..-..+--+++++.
T Consensus       116 ~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~---~v~~~l~~~~l~l~  191 (608)
T PF10345_consen  116 KA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV---FVLASLSEALLHLR  191 (608)
T ss_pred             HH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH---HHHHHHHHHHHHhc
Confidence            55 9999999999999866543332222211333333489999999999986443  344211   11111222566777


Q ss_pred             cCCHHHHHHHHHHH
Q 024043          206 KGDVVAITNALERY  219 (273)
Q Consensus       206 ~gd~~~A~~~~~~~  219 (273)
                      .+....+.+.+++.
T Consensus       192 ~~~~~d~~~~l~~~  205 (608)
T PF10345_consen  192 RGSPDDVLELLQRA  205 (608)
T ss_pred             CCCchhHHHHHHHH
Confidence            77555555555543

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.24  E-value=0.013  Score=42.96  Aligned_cols=101  Identities=15%  Similarity=0.127  Sum_probs=73.5

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHH-----H
Q 024043           45 LAKSWDKAGATYVKLANCHLKLES------KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMA-----A  112 (273)
Q Consensus        45 ~~~~~~~A~~~~~~a~~~~~~~~~------~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~-----a  112 (273)
                      ..|.|++|...+.+|.++.+.+..      ..--+-++.-++..+..+ +|++++..-.+|+..|.+.|...+.     .
T Consensus        21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI  100 (144)
T PF12968_consen   21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWI  100 (144)
T ss_dssp             HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence            356788888888888888875542      223566777788888777 9999999999999999887764332     3


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 024043          113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNE  145 (273)
Q Consensus       113 ~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~  145 (273)
                      .+..+-+..+..+|++++|+..|+.|.++..+-
T Consensus       101 aaVfsra~Al~~~Gr~~eA~~~fr~agEMiaER  133 (144)
T PF12968_consen  101 AAVFSRAVALEGLGRKEEALKEFRMAGEMIAER  133 (144)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence            344567788899999999999999999998653

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=97.22  E-value=0.021  Score=53.33  Aligned_cols=181  Identities=12%  Similarity=0.098  Sum_probs=97.8

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 024043           43 FKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAEL  121 (273)
Q Consensus        43 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~  121 (273)
                      +....-++++..+|++.+.++ +..+..+.-..|..-..--..+ .++.|...|++|++     |-+...++.+.-+=-.
T Consensus       521 LEeh~yfeesFk~YErgI~LF-k~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-----~Cpp~~aKtiyLlYA~  594 (835)
T KOG2047|consen  521 LEEHKYFEESFKAYERGISLF-KWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-----GCPPEHAKTIYLLYAK  594 (835)
T ss_pred             HHhhHHHHHHHHHHHcCCccC-CCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHH
Confidence            334445677777777777776 3334444444443322222222 88999999999997     3345555555544444


Q ss_pred             HHh-cCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHH
Q 024043          122 YES-EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAG  200 (273)
Q Consensus       122 ~~~-~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  200 (273)
                      +++ -|-...|+..|++|..-.........-.-+..+.+.+|.-    ..-.++|++++...+++     ..++..++-.
T Consensus       595 lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv----~~TR~iYekaIe~Lp~~-----~~r~mclrFA  665 (835)
T KOG2047|consen  595 LEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGV----PRTREIYEKAIESLPDS-----KAREMCLRFA  665 (835)
T ss_pred             HHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCC----cccHHHHHHHHHhCChH-----HHHHHHHHHH
Confidence            433 3777777777777654433322222222233344444322    23345666666543333     2334444444


Q ss_pred             HHHHhcCCHHHHHHHHHHHH---------------HHHHHHhhcCHhHHHHHHH
Q 024043          201 ICQLCKGDVVAITNALERYQ---------------DIAASMDEEDIAKFTDVVK  239 (273)
Q Consensus       201 l~~l~~gd~~~A~~~~~~~~---------------~ll~a~~~~d~~~~~~~~~  239 (273)
                      ..-...|..++|+..+....               ..++ +.+||.+.+.+-+.
T Consensus       666 dlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FE-vrHGnedT~keMLR  718 (835)
T KOG2047|consen  666 DLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFE-VRHGNEDTYKEMLR  718 (835)
T ss_pred             HHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHH-HhcCCHHHHHHHHH
Confidence            44556778888877666433               2232 56777777666553

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.20  E-value=0.012  Score=54.80  Aligned_cols=99  Identities=13%  Similarity=0.134  Sum_probs=77.0

Q ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchh
Q 024043          109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLL  188 (273)
Q Consensus       109 ~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~  188 (273)
                      ...-.++.-++..|...|++++|+++.++|++.-      +...+.+..-|.++-..|++.+|.+.++.+-.....++  
T Consensus       191 ~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht------Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR--  262 (517)
T PF12569_consen  191 STLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT------PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR--  262 (517)
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH--
Confidence            3345688999999999999999999999999884      34468899999999999999999999999854333331  


Q ss_pred             hhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          189 KYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       189 ~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                       +    ...++.-.++..|+++.|...+..|.
T Consensus       263 -y----iNsK~aKy~LRa~~~e~A~~~~~~Ft  289 (517)
T PF12569_consen  263 -Y----INSKCAKYLLRAGRIEEAEKTASLFT  289 (517)
T ss_pred             -H----HHHHHHHHHHHCCCHHHHHHHHHhhc
Confidence             1    22234555678888988888877665

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.18  E-value=0.0012  Score=44.11  Aligned_cols=58  Identities=19%  Similarity=0.218  Sum_probs=47.2

Q ss_pred             HHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043           81 HCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (273)
Q Consensus        81 ~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~  144 (273)
                      .+|... ++++|++++++++.+.+..      ...+...|.++..+|++.+|+..++++++..+.
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~   61 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDD------PELWLQRARCLFQLGRYEEALEDLERALELSPD   61 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCccc------chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence            455555 8999999999998886653      458888999999999999999999999977653

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.18  E-value=0.0012  Score=37.06  Aligned_cols=32  Identities=28%  Similarity=0.548  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 024043          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQ  143 (273)
Q Consensus       112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~  143 (273)
                      |+++..+|.+|..+|++++|+.+|++++++.+
T Consensus         1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            45778888888888888888888888888765

...

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.16  E-value=0.035  Score=42.47  Aligned_cols=99  Identities=12%  Similarity=0.126  Sum_probs=65.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHhccC-----C-c----------ccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 024043          119 AELYESEHNIEQTIVFFEKAADMFQNEE-----V-T----------TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS  182 (273)
Q Consensus       119 g~~~~~~g~~~~A~~~y~~Al~~~~~~~-----~-~----------~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~  182 (273)
                      |......|+.+.++..+++|+.+|...-     . +          .....++..++..+...|++++|+..+++++...
T Consensus        13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d   92 (146)
T PF03704_consen   13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD   92 (146)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence            4444445777777778888877776421     1 0          1112566677778888999999999999998665


Q ss_pred             hccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 024043          183 LNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDIAA  224 (273)
Q Consensus       183 ~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~  224 (273)
                      +-+.       ..+..+..++...|+...|.+.++++...+.
T Consensus        93 P~~E-------~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~  127 (146)
T PF03704_consen   93 PYDE-------EAYRLLMRALAAQGRRAEALRVYERYRRRLR  127 (146)
T ss_dssp             TT-H-------HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred             CCCH-------HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence            5432       2345567788999999999999999986554

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.14  E-value=0.12  Score=43.30  Aligned_cols=163  Identities=15%  Similarity=0.146  Sum_probs=115.3

Q ss_pred             hHHHHHHHHHHhhccccCCCCCHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCH
Q 024043            7 RAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKA-----------------ANSFKLAKSWDKAGATYVKLANCHLKLESK   69 (273)
Q Consensus         7 ~a~~l~~~Aek~~k~~~~~~~~~~~A~~~~~~a-----------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~   69 (273)
                      .|.+|..++.+.|.     +|+|++|.+.|+..                 +-.+...+++++|+....+-..++...   
T Consensus        33 p~~~LY~~g~~~L~-----~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~---  104 (254)
T COG4105          33 PASELYNEGLTELQ-----KGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTH---  104 (254)
T ss_pred             CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC---
Confidence            67888999988887     35888998888865                 456777899999999988888776543   


Q ss_pred             HHHHHHHHHHHHHHhcc------CH---HHHHHHHHHHHHHHHhcCCh-----------hHHHHHHHHHHHHHHhcCCHH
Q 024043           70 HEAAQAYVDAAHCYKKT------SS---NEAISCLEQAVNMFCDIGRL-----------SMAARYYKEIAELYESEHNIE  129 (273)
Q Consensus        70 ~~aa~~~~~~~~~~~~~------~~---~eA~~~~~~Al~~~~~~g~~-----------~~~a~~l~~lg~~~~~~g~~~  129 (273)
                      ..+.-++.-.|.++...      |+   .+|+.-++.-+.-|+...-.           ...|.--..+|..|.+.|.+.
T Consensus       105 ~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~  184 (254)
T COG4105         105 PNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYV  184 (254)
T ss_pred             CChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence            34556666667666544      33   34555555555554433211           123455667889999999999


Q ss_pred             HHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 024043          130 QTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR  180 (273)
Q Consensus       130 ~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~  180 (273)
                      .|+..+++.++-|+...   .....+-.+...|..+|-.++|-..-.=+..
T Consensus       185 AA~nR~~~v~e~y~~t~---~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~  232 (254)
T COG4105         185 AAINRFEEVLENYPDTS---AVREALARLEEAYYALGLTDEAKKTAKVLGA  232 (254)
T ss_pred             HHHHHHHHHHhcccccc---chHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence            99999999998887654   3446788888899999988888775444333

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.12  E-value=0.028  Score=48.00  Aligned_cols=161  Identities=8%  Similarity=0.072  Sum_probs=89.5

Q ss_pred             cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChh-HHHHHHHHHHH---
Q 024043           46 AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLS-MAARYYKEIAE---  120 (273)
Q Consensus        46 ~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~-~~a~~l~~lg~---  120 (273)
                      -.+|.+|+++...-.+...+    ..  ..+.-+|.||... ++..|.+||++-..++++..... -.|..+.+.+.   
T Consensus        23 d~ry~DaI~~l~s~~Er~p~----~r--AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~AD   96 (459)
T KOG4340|consen   23 DARYADAIQLLGSELERSPR----SR--AGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYAD   96 (459)
T ss_pred             HhhHHHHHHHHHHHHhcCcc----ch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHH
Confidence            34567777665544333211    11  2345577787766 78888888887766555432211 11222222110   


Q ss_pred             ---HHHhcCC---HHHHHHHHHHHHHHHhcc---------CCc-ccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 024043          121 ---LYESEHN---IEQTIVFFEKAADMFQNE---------EVT-TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN  184 (273)
Q Consensus       121 ---~~~~~g~---~~~A~~~y~~Al~~~~~~---------~~~-~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~  184 (273)
                         +....++   .-.-.-..+.|+...+.+         ..+ .+.+.+.++.|-+..+.|+|+.|+.-|+.+....--
T Consensus        97 ALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy  176 (459)
T KOG4340|consen   97 ALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY  176 (459)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCC
Confidence               1111122   111112233344333221         011 244577888888999999999999999998643222


Q ss_pred             cchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043          185 NNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY  219 (273)
Q Consensus       185 ~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~  219 (273)
                      ++       ..-+++.+||...|++..|.+...+-
T Consensus       177 qp-------llAYniALaHy~~~qyasALk~iSEI  204 (459)
T KOG4340|consen  177 QP-------LLAYNLALAHYSSRQYASALKHISEI  204 (459)
T ss_pred             Cc-------hhHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            11       13367889999999999998877654

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.09  E-value=0.096  Score=41.23  Aligned_cols=166  Identities=17%  Similarity=0.138  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHH
Q 024043           35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAAR  113 (273)
Q Consensus        35 ~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~  113 (273)
                      .+...+..+...+.+..+...+......    .........+...+.++... ++.+++..+.+++.......    .  
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--  130 (291)
T COG0457          61 LLLLLALALLKLGRLEEALELLEKALEL----ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD----L--  130 (291)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhh----hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc----h--
Confidence            3444566677777777777777777664    12233345566666666555 67777777777766544331    1  


Q ss_pred             HHHHHHH-HHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhch
Q 024043          114 YYKEIAE-LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGV  192 (273)
Q Consensus       114 ~l~~lg~-~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~  192 (273)
                      .....+. ++...|+++.|+..|.+++.....   ...........+..+...+++++|+..+.++.......      .
T Consensus       131 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------~  201 (291)
T COG0457         131 AEALLALGALYELGDYEEALELYEKALELDPE---LNELAEALLALGALLEALGRYEEALELLEKALKLNPDD------D  201 (291)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc------c
Confidence            2222222 677778899999999888552211   11233445555666777888888888888886443331      1


Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043          193 KGHLLNAGICQLCKGDVVAITNALERY  219 (273)
Q Consensus       193 ~~~~~~~gl~~l~~gd~~~A~~~~~~~  219 (273)
                      ...+..++.++...+++..|...+...
T Consensus       202 ~~~~~~~~~~~~~~~~~~~a~~~~~~~  228 (291)
T COG0457         202 AEALLNLGLLYLKLGKYEEALEYYEKA  228 (291)
T ss_pred             hHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence            223455666777777777776666654

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.07  E-value=0.029  Score=48.48  Aligned_cols=114  Identities=16%  Similarity=0.148  Sum_probs=96.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 024043           58 KLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFE  136 (273)
Q Consensus        58 ~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~  136 (273)
                      +++..-..-|++++.|..|-.=|+-|.+. +|..|+.+|.+.+.  .+.+|+.--|.+|.|-+-+....|+|..|+.-..
T Consensus        66 qslK~da~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk--~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs  143 (390)
T KOG0551|consen   66 QSLKADAEEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLK--KKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCS  143 (390)
T ss_pred             HHhhhccccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHh--hcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            33444446678999999999999988777 99999999999876  5678999999999999999999999999999999


Q ss_pred             HHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043          137 KAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA  179 (273)
Q Consensus       137 ~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~  179 (273)
                      +|+.+-.      .-..++.+-|.++..+.++.+|+...+...
T Consensus       144 ~al~~~P------~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~  180 (390)
T KOG0551|consen  144 AALKLKP------THLKAYIRGAKCLLELERFAEAVNWCEEGL  180 (390)
T ss_pred             HHHhcCc------chhhhhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence            9987743      234678888999999999999998887764

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.05  E-value=0.0086  Score=55.29  Aligned_cols=119  Identities=18%  Similarity=0.188  Sum_probs=88.8

Q ss_pred             CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc
Q 024043           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE  166 (273)
Q Consensus        87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g  166 (273)
                      +.+.|.+.+......|++      .+-.+...|.++...|+.++|++.|++|++.-.  ..+.-..-|+..+|.++.-+.
T Consensus       248 ~~~~a~~lL~~~~~~yP~------s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~--~~~Ql~~l~~~El~w~~~~~~  319 (468)
T PF10300_consen  248 PLEEAEELLEEMLKRYPN------SALFLFFEGRLERLKGNLEEAIESFERAIESQS--EWKQLHHLCYFELAWCHMFQH  319 (468)
T ss_pred             CHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchh--hHHhHHHHHHHHHHHHHHHHc
Confidence            345566666666655553      345788889999999999999999999994332  223444578999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCH-------HHHHHHHHHH
Q 024043          167 QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDV-------VAITNALERY  219 (273)
Q Consensus       167 ~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~-------~~A~~~~~~~  219 (273)
                      +|++|.++|.+....      ..++..-+.+-.+.|++..|+.       .+|...+.+.
T Consensus       320 ~w~~A~~~f~~L~~~------s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v  373 (468)
T PF10300_consen  320 DWEEAAEYFLRLLKE------SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV  373 (468)
T ss_pred             hHHHHHHHHHHHHhc------cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence            999999999998642      2466666777789999999988       5555555543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.05  E-value=0.048  Score=43.70  Aligned_cols=101  Identities=12%  Similarity=0.069  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCccc
Q 024043           72 AAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTS  150 (273)
Q Consensus        72 aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~  150 (273)
                      +.-....++..+.+. ++++|+..++.++..   ..|...-+-+-.+++.+...+|.+++|+..+.       ....+..
T Consensus        88 a~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~-------t~~~~~w  157 (207)
T COG2976          88 AVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLD-------TIKEESW  157 (207)
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-------ccccccH
Confidence            333444556666555 999999999988753   44555666777889999999999998877663       4444456


Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 024043          151 ANQCKQKVAQYAAELEQYHKSIEIYEEIARQS  182 (273)
Q Consensus       151 ~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~  182 (273)
                      .+......|+++...|+-.+|...|++++...
T Consensus       158 ~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         158 AAIVAELRGDILLAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence            66777888999999999999999999997654

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.04  E-value=0.12  Score=41.42  Aligned_cols=100  Identities=13%  Similarity=0.052  Sum_probs=73.1

Q ss_pred             HHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHH
Q 024043           76 YVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQC  154 (273)
Q Consensus        76 ~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~  154 (273)
                      ...+++...+. ++.||..+|++|+     .|-+...+..+..++......+++..|...+++-.+....-.+    .+.
T Consensus        92 r~rLa~al~elGr~~EA~~hy~qal-----sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~----pd~  162 (251)
T COG4700          92 RYRLANALAELGRYHEAVPHYQQAL-----SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRS----PDG  162 (251)
T ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHh-----ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCC----CCc
Confidence            34455555555 8888999998886     4555556677888888888888888888888877666533332    244


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 024043          155 KQKVAQYAAELEQYHKSIEIYEEIARQSLN  184 (273)
Q Consensus       155 ~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~  184 (273)
                      ..-+|.++..+|+|.+|...|+.++.-.+|
T Consensus       163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg  192 (251)
T COG4700         163 HLLFARTLAAQGKYADAESAFEVAISYYPG  192 (251)
T ss_pred             hHHHHHHHHhcCCchhHHHHHHHHHHhCCC
Confidence            677888888899999999888888755444

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.03  E-value=0.0023  Score=42.09  Aligned_cols=50  Identities=24%  Similarity=0.339  Sum_probs=41.7

Q ss_pred             HHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043          163 AELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY  219 (273)
Q Consensus       163 ~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~  219 (273)
                      ...|+|++|++.|++++...+++.       ...+.++.|++..|++++|...+++.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~l~~~   51 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNP-------EARLLLAQCYLKQGQYDEAEELLERL   51 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSH-------HHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            568999999999999987777653       35678899999999999999999875

...

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.02  E-value=0.092  Score=41.36  Aligned_cols=164  Identities=18%  Similarity=0.190  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHH
Q 024043           36 FDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARY  114 (273)
Q Consensus        36 ~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~  114 (273)
                      +...+..+...+++..++..+.++.......    .....+...+ ++... ++++|+.+|.+++.....   .......
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~  169 (291)
T COG0457          98 LLNLGLLLEALGKYEEALELLEKALALDPDP----DLAEALLALG-ALYELGDYEEALELYEKALELDPE---LNELAEA  169 (291)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc----chHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCC---ccchHHH
Confidence            3344555555666666666666665543222    1112222222 55555 999999999999442111   1334445


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhh
Q 024043          115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKG  194 (273)
Q Consensus       115 l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~  194 (273)
                      +...+..+...+++++++..+.+++......     ....+..++..+...+++.+|+..+..+.......       ..
T Consensus       170 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~  237 (291)
T COG0457         170 LLALGALLEALGRYEEALELLEKALKLNPDD-----DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDN-------AE  237 (291)
T ss_pred             HHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-----chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCccc-------HH
Confidence            5555666777799999999999999998654     34668888999999999999999999987543321       11


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043          195 HLLNAGICQLCKGDVVAITNALERY  219 (273)
Q Consensus       195 ~~~~~gl~~l~~gd~~~A~~~~~~~  219 (273)
                      .+...+..+...|+...+...+.+.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~  262 (291)
T COG0457         238 ALYNLALLLLELGRYEEALEALEKA  262 (291)
T ss_pred             HHhhHHHHHHHcCCHHHHHHHHHHH
Confidence            2333444444556676666666654

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.01  E-value=0.063  Score=43.05  Aligned_cols=107  Identities=16%  Similarity=0.130  Sum_probs=79.8

Q ss_pred             HhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 024043          103 CDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS  182 (273)
Q Consensus       103 ~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~  182 (273)
                      ..+|...-+.-+...++..+...+++++|...++.++..-.+.   ..-+-+-.++|.+...+|++++|+..+.......
T Consensus        80 ~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De---~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~  156 (207)
T COG2976          80 QANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDE---NLKALAALRLARVQLQQKKADAALKTLDTIKEES  156 (207)
T ss_pred             hhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhH---HHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc
Confidence            3455666677778888999999999999999999998654332   2334556899999999999999999987763211


Q ss_pred             hccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          183 LNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       183 ~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                             | .......-|.+++..||..+|+..|+...
T Consensus       157 -------w-~~~~~elrGDill~kg~k~~Ar~ay~kAl  186 (207)
T COG2976         157 -------W-AAIVAELRGDILLAKGDKQEARAAYEKAL  186 (207)
T ss_pred             -------H-HHHHHHHhhhHHHHcCchHHHHHHHHHHH
Confidence                   1 11122234889999999999999999863

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.01  E-value=0.0017  Score=37.17  Aligned_cols=26  Identities=23%  Similarity=0.397  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043          154 CKQKVAQYAAELEQYHKSIEIYEEIA  179 (273)
Q Consensus       154 ~~~~~a~~~~~~g~y~~A~~~~~~~~  179 (273)
                      ++.++|.+|..+|+|++|+++|++++
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            47899999999999999999999975

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=97.01  E-value=0.03  Score=44.68  Aligned_cols=133  Identities=11%  Similarity=0.053  Sum_probs=98.5

Q ss_pred             hHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Q 024043            7 RAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT   86 (273)
Q Consensus         7 ~a~~l~~~Aek~~k~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~   86 (273)
                      +..+-+.+=+..++.- .=+.-=++....+...|..|...|+.++|+++|.++.+-   .-.+......+.+...+....
T Consensus        11 ~~~~~~~~Le~elk~~-~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~---~~~~~~~id~~l~~irv~i~~   86 (177)
T PF10602_consen   11 KNAEELEKLEAELKDA-KSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDY---CTSPGHKIDMCLNVIRVAIFF   86 (177)
T ss_pred             HHHHHHHHHHHHHHHH-HhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh---cCCHHHHHHHHHHHHHHHHHh
Confidence            4444445555555410 001222667788889999999999999999999996553   445666677777777776555


Q ss_pred             -CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 024043           87 -SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ  143 (273)
Q Consensus        87 -~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~  143 (273)
                       ++.....+..+|-.+....|++....+...--|..+...++|.+|.+.|-.+..-|.
T Consensus        87 ~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~  144 (177)
T PF10602_consen   87 GDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTFT  144 (177)
T ss_pred             CCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence             999999999999999999999888887777777777777899998888877665443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.95  E-value=0.0024  Score=37.43  Aligned_cols=34  Identities=18%  Similarity=0.333  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 024043          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE  145 (273)
Q Consensus       112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~  145 (273)
                      +.++.++|.+|...|++++|..++++++++.+..
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~   35 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRERL   35 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence            5678899999999999999999999999888765

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.93  E-value=0.0021  Score=36.01  Aligned_cols=32  Identities=13%  Similarity=0.232  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 024043          152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQSL  183 (273)
Q Consensus       152 ~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~  183 (273)
                      +.++.++|.++..+|+|++|+..|++++...+
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p   32 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence            35789999999999999999999999986543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.93  E-value=0.025  Score=52.83  Aligned_cols=116  Identities=13%  Similarity=0.006  Sum_probs=78.5

Q ss_pred             CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc---C-----CHHHHHHHHHHHHHHHhccCCcccHHHHHHHH
Q 024043           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE---H-----NIEQTIVFFEKAADMFQNEEVTTSANQCKQKV  158 (273)
Q Consensus        87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~---g-----~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~  158 (273)
                      ++.+|+++|++|+++-...      +.++..++.++...   +     +..++.+...+++.+-.   .+.. ..++.-+
T Consensus       357 ~~~~A~~lle~Ai~ldP~~------a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~---~~~~-~~~~~al  426 (517)
T PRK10153        357 SLNKASDLLEEILKSEPDF------TYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPE---LNVL-PRIYEIL  426 (517)
T ss_pred             HHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhccc---CcCC-hHHHHHH
Confidence            5789999999999886544      33444445544332   1     12334444444443311   1112 3567778


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          159 AQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       159 a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      |.++...|++++|...+++++...+.        ...+..+|.++...|+.++|.+.+++..
T Consensus       427 a~~~~~~g~~~~A~~~l~rAl~L~ps--------~~a~~~lG~~~~~~G~~~eA~~~~~~A~  480 (517)
T PRK10153        427 AVQALVKGKTDEAYQAINKAIDLEMS--------WLNYVLLGKVYELKGDNRLAADAYSTAF  480 (517)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            88888899999999999999764431        2356778999999999999999998864

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.92  E-value=0.21  Score=42.31  Aligned_cols=147  Identities=10%  Similarity=0.099  Sum_probs=97.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc
Q 024043           27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI  105 (273)
Q Consensus        27 ~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~  105 (273)
                      ||.+---++|+.-|-.   ...+++|+..|.+.+++--+-|++.-  .++-.+..++.+. ++++-++.|.+.+...+..
T Consensus        24 pdVDlENQYYnsK~l~---e~~p~~Al~sF~kVlelEgEKgeWGF--KALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA   98 (440)
T KOG1464|consen   24 PDVDLENQYYNSKGLK---EDEPKEALSSFQKVLELEGEKGEWGF--KALKQMIKINFRLGNYKEMMERYKQLLTYIKSA   98 (440)
T ss_pred             CCcchHhhhhcccccc---ccCHHHHHHHHHHHHhcccccchhHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence            5555555555543322   34789999999999998766665533  4566667777666 8999999999888776543


Q ss_pred             CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 024043          106 GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI  178 (273)
Q Consensus       106 g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~  178 (273)
                      --..-.-++.+.+-.......+.+--.++|+..++..+...+.+.-..+-.++|.+++..|+|.+-.+++.+.
T Consensus        99 VTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqL  171 (440)
T KOG1464|consen   99 VTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQL  171 (440)
T ss_pred             HhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHH
Confidence            2222233344444444444466666778899888888877654444466678899988888887766666554

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.90  E-value=0.0027  Score=35.44  Aligned_cols=32  Identities=19%  Similarity=0.220  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 024043          152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQSL  183 (273)
Q Consensus       152 ~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~  183 (273)
                      +.++..+|.++..+|+|++|+++|++++...+
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p   32 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence            35788999999999999999999999986544

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=96.89  E-value=0.23  Score=42.35  Aligned_cols=140  Identities=7%  Similarity=0.006  Sum_probs=94.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHHhcCChhHHHHHH
Q 024043           38 KAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT--SSNEAISCLEQAVNMFCDIGRLSMAARYY  115 (273)
Q Consensus        38 ~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~--~~~eA~~~~~~Al~~~~~~g~~~~~a~~l  115 (273)
                      ..+.+|...|++..-++.-...-+.......+ ..+.....+-.-+...  .++.-+..+...++...+-.+....-..-
T Consensus        50 el~~lyv~~g~~~~l~~~i~~sre~m~~ftk~-k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le  128 (421)
T COG5159          50 ELFKLYVSKGDYCSLGDTITSSREAMEDFTKP-KITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELE  128 (421)
T ss_pred             HHHHHHHhcCCcchHHHHHHhhHHHHHHhcch-hHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677888888888888777777776654332 2334444444444333  67777888888877766555544444455


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 024043          116 KEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI  178 (273)
Q Consensus       116 ~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~  178 (273)
                      .++..++...|.|..|+....--+.-+..-++......++.--..+|....+..++...+..+
T Consensus       129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaA  191 (421)
T COG5159         129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAA  191 (421)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHH
Confidence            567777777899999999988877777776665555566666677787777777766655544

>PRK11906 transcriptional regulator; Provisional

Probab=96.89  E-value=0.041  Score=49.83  Aligned_cols=139  Identities=12%  Similarity=0.046  Sum_probs=96.2

Q ss_pred             HHHHH--HHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc----------CHHHHHHH
Q 024043           29 YEDAA--DLFDKAANSFKLA--KSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT----------SSNEAISC   94 (273)
Q Consensus        29 ~~~A~--~~~~~a~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~----------~~~eA~~~   94 (273)
                      +..|+  ++|.++-..+...  ...+.|...|.+|.....-   ..+-+.+|.-++.|+...          +..+|+++
T Consensus       250 ~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~l---dp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~  326 (458)
T PRK11906        250 YKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDI---QTLKTECYCLLAECHMSLALHGKSELELAAQKALEL  326 (458)
T ss_pred             cccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccC---CcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence            34777  7777754333322  1345666677777732211   122344555555555322          34678888


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHH
Q 024043           95 LEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEI  174 (273)
Q Consensus        95 ~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~  174 (273)
                      .++|+++-...      +.++..+|.++...++++.|+..+++|+.+..      +.+.++...|.+..-.|+.++|++.
T Consensus       327 A~rAveld~~D------a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~P------n~A~~~~~~~~~~~~~G~~~~a~~~  394 (458)
T PRK11906        327 LDYVSDITTVD------GKILAIMGLITGLSGQAKVSHILFEQAKIHST------DIASLYYYRALVHFHNEKIEEARIC  394 (458)
T ss_pred             HHHHHhcCCCC------HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCC------ccHHHHHHHHHHHHHcCCHHHHHHH
Confidence            88888765433      45888889988888999999999999999964      4568899999999999999999999


Q ss_pred             HHHHHHHH
Q 024043          175 YEEIARQS  182 (273)
Q Consensus       175 ~~~~~~~~  182 (273)
                      .++++..+
T Consensus       395 i~~alrLs  402 (458)
T PRK11906        395 IDKSLQLE  402 (458)
T ss_pred             HHHHhccC
Confidence            99987543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.83  E-value=0.035  Score=42.35  Aligned_cols=106  Identities=16%  Similarity=0.184  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHH
Q 024043           74 QAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ  153 (273)
Q Consensus        74 ~~~~~~~~~~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~  153 (273)
                      ..|..+-..+...+|.+|++.++....-|.-.   .-+..+...++-+|...+++++|+..+++=+.++....   .+..
T Consensus        12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g---~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp---~vdY   85 (142)
T PF13512_consen   12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFG---EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP---NVDY   85 (142)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC---CccH
Confidence            34444455555568888888888766655422   23446788899999999999999999999888887664   4456


Q ss_pred             HHHHHHHHHHHhcC---------------HHHHHHHHHHHHHHHhcc
Q 024043          154 CKQKVAQYAAELEQ---------------YHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       154 ~~~~~a~~~~~~g~---------------y~~A~~~~~~~~~~~~~~  185 (273)
                      ++...|.++..+..               ..+|...|++.+...+++
T Consensus        86 a~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S  132 (142)
T PF13512_consen   86 AYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS  132 (142)
T ss_pred             HHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence            78888888877765               778889999988877776

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=96.71  E-value=0.098  Score=47.41  Aligned_cols=119  Identities=16%  Similarity=0.041  Sum_probs=87.8

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 024043           42 SFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAE  120 (273)
Q Consensus        42 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~  120 (273)
                      .+...|.+++|...+...+....  +|    .....-++.++.+. ++.+|.+.+++++.+....      .....+.|.
T Consensus       315 ~~~~~~~~d~A~~~l~~L~~~~P--~N----~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~------~~l~~~~a~  382 (484)
T COG4783         315 QTYLAGQYDEALKLLQPLIAAQP--DN----PYYLELAGDILLEANKAKEAIERLKKALALDPNS------PLLQLNLAQ  382 (484)
T ss_pred             HHHHhcccchHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc------cHHHHHHHH
Confidence            34446677777777777333221  23    34555678888777 9999999999999887654      347889999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 024043          121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI  178 (273)
Q Consensus       121 ~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~  178 (273)
                      .+...|++.+|+....+.+.-..      .-...|..+|..|..+|+-.+|...+-+.
T Consensus       383 all~~g~~~eai~~L~~~~~~~p------~dp~~w~~LAqay~~~g~~~~a~~A~AE~  434 (484)
T COG4783         383 ALLKGGKPQEAIRILNRYLFNDP------EDPNGWDLLAQAYAELGNRAEALLARAEG  434 (484)
T ss_pred             HHHhcCChHHHHHHHHHHhhcCC------CCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence            99999999999998887654322      22467888999999999888888776554

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.68  E-value=0.069  Score=40.81  Aligned_cols=61  Identities=11%  Similarity=0.205  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043          113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA  179 (273)
Q Consensus       113 ~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~  179 (273)
                      .++..++..+...|++++|+..+++++.+.+-+      -.++..+-.++...|++.+|++.|++..
T Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~------E~~~~~lm~~~~~~g~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   63 DALERLAEALLEAGDYEEALRLLQRALALDPYD------EEAYRLLMRALAAQGRRAEALRVYERYR  123 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-------HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            367778888888899999999999999986532      3567888899999999999999999884

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.62  E-value=0.031  Score=48.33  Aligned_cols=154  Identities=14%  Similarity=0.167  Sum_probs=95.6

Q ss_pred             HHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHH
Q 024043           76 YVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQC  154 (273)
Q Consensus        76 ~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~  154 (273)
                      ..-+|.++... ++++|++.+.+.       ++.    .+..-.-.++...++++.|...++..-++.+      .  .+
T Consensus       105 ~~~~A~i~~~~~~~~~AL~~l~~~-------~~l----E~~al~Vqi~L~~~R~dlA~k~l~~~~~~~e------D--~~  165 (290)
T PF04733_consen  105 QLLAATILFHEGDYEEALKLLHKG-------GSL----ELLALAVQILLKMNRPDLAEKELKNMQQIDE------D--SI  165 (290)
T ss_dssp             HHHHHHHHCCCCHHHHHHCCCTTT-------TCH----HHHHHHHHHHHHTT-HHHHHHHHHHHHCCSC------C--HH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHcc-------Ccc----cHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------c--HH
Confidence            34455566544 777777776542       222    2333455677788999999988877654421      1  23


Q ss_pred             HHHHHH--HHHHhc--CHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH----------
Q 024043          155 KQKVAQ--YAAELE--QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ----------  220 (273)
Q Consensus       155 ~~~~a~--~~~~~g--~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~----------  220 (273)
                      +.+++.  +....|  +|.+|..+|++...+...       ....+...+.|++.+|++++|...+++..          
T Consensus       166 l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~-------t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L  238 (290)
T PF04733_consen  166 LTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS-------TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL  238 (290)
T ss_dssp             HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS---------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred             HHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC-------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence            444444  444444  799999999997532211       22345567889999999999999998854          


Q ss_pred             -HHHH-HHhhcCH-hHHHHHHHhhhccCCCchhHHHHH
Q 024043          221 -DIAA-SMDEEDI-AKFTDVVKEFDSMTPLDPWKTTLL  255 (273)
Q Consensus       221 -~ll~-a~~~~d~-~~~~~~~~~~~~~~~ld~~~~~~l  255 (273)
                       .++- +...|+. +..++.+.......|-.||...+-
T Consensus       239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~  276 (290)
T PF04733_consen  239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDLA  276 (290)
T ss_dssp             HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHHH
T ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHHH
Confidence             2222 2334554 667777777777788888876543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.61  E-value=0.2  Score=43.96  Aligned_cols=59  Identities=14%  Similarity=0.216  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          155 KQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       155 ~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      ...+|.++.-.-.|.+||++|.+++...+.     +..  .-..+.+|+...+-++-+.+.+..|.
T Consensus       154 qLSLAsvhYmR~HYQeAIdvYkrvL~dn~e-----y~a--lNVy~ALCyyKlDYydvsqevl~vYL  212 (557)
T KOG3785|consen  154 QLSLASVHYMRMHYQEAIDVYKRVLQDNPE-----YIA--LNVYMALCYYKLDYYDVSQEVLKVYL  212 (557)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHhcChh-----hhh--hHHHHHHHHHhcchhhhHHHHHHHHH
Confidence            455667777677899999999998743222     111  22346788888876666777777775

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.60  E-value=0.062  Score=44.46  Aligned_cols=80  Identities=16%  Similarity=0.203  Sum_probs=36.7

Q ss_pred             CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc
Q 024043           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE  166 (273)
Q Consensus        87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g  166 (273)
                      +|+.|+.+|.+|+.+...      .+..+.|-+.+|.++.+++.+.+-..+|+++..      +......-+|.+.....
T Consensus        25 ~y~~ai~~y~raI~~nP~------~~~Y~tnralchlk~~~~~~v~~dcrralql~~------N~vk~h~flg~~~l~s~   92 (284)
T KOG4642|consen   25 RYDDAIDCYSRAICINPT------VASYYTNRALCHLKLKHWEPVEEDCRRALQLDP------NLVKAHYFLGQWLLQSK   92 (284)
T ss_pred             hhchHHHHHHHHHhcCCC------cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcCh------HHHHHHHHHHHHHHhhc
Confidence            444555555554443321      122444444555444555555555555554432      22233444444445555


Q ss_pred             CHHHHHHHHHHH
Q 024043          167 QYHKSIEIYEEI  178 (273)
Q Consensus       167 ~y~~A~~~~~~~  178 (273)
                      .|++||..++++
T Consensus        93 ~~~eaI~~Lqra  104 (284)
T KOG4642|consen   93 GYDEAIKVLQRA  104 (284)
T ss_pred             cccHHHHHHHHH
Confidence            555555555554

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=96.58  E-value=0.8  Score=44.72  Aligned_cols=184  Identities=10%  Similarity=-0.024  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHHHhcCChh
Q 024043           33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT---SSNEAISCLEQAVNMFCDIGRLS  109 (273)
Q Consensus        33 ~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~---~~~eA~~~~~~Al~~~~~~g~~~  109 (273)
                      +.++...|.++...|++++|..+..++.+..++.+.+.-+..+...-+.+....   -+.+....|..--....... +.
T Consensus       497 ~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~-~~  575 (894)
T COG2909         497 IVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQK-PR  575 (894)
T ss_pred             hhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc-cc
Confidence            445556688999999999999999999999999998888888877777777554   23333333332222211111 11


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC-cccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchh
Q 024043          110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV-TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLL  188 (273)
Q Consensus       110 ~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~-~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~  188 (273)
                      ..-..... +.++...-+++.+..-..+++++-..... +....-.+..++.++...|++++|.....+.-....+...-
T Consensus       576 ~~f~~~~r-~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~  654 (894)
T COG2909         576 HEFLVRIR-AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYH  654 (894)
T ss_pred             chhHHHHH-HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCC
Confidence            11111112 22222222366666666666666544332 22222333589999999999999999988875333332100


Q ss_pred             hhchhhHHHHHHHHHHhcCCHHHHHHHHHH
Q 024043          189 KYGVKGHLLNAGICQLCKGDVVAITNALER  218 (273)
Q Consensus       189 ~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~  218 (273)
                      .+-.+....--.+.++.+||...+..-+.+
T Consensus       655 ~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         655 VDYLAAAYKVKLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             chHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence            111111111113446778998877665554

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=96.55  E-value=0.44  Score=43.41  Aligned_cols=174  Identities=14%  Similarity=0.020  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--C------HHHHHHHHHHHHHHHHhc-
Q 024043           35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT--S------SNEAISCLEQAVNMFCDI-  105 (273)
Q Consensus        35 ~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~--~------~~eA~~~~~~Al~~~~~~-  105 (273)
                      ...++|...-..++|+-|...|..+..=+..-+.+.-.|.+++-++.+....  .      .++...+++.|+..|... 
T Consensus       210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~  289 (414)
T PF12739_consen  210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA  289 (414)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence            4557899999999999999999999988876666777777888888777555  2      247888899999999883 


Q ss_pred             ----CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh-ccCCcccHHHHHHHHHHHH--HHhcCHHHHHHHHHHH
Q 024043          106 ----GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ-NEEVTTSANQCKQKVAQYA--AELEQYHKSIEIYEEI  178 (273)
Q Consensus       106 ----g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~-~~~~~~~~~~~~~~~a~~~--~~~g~y~~A~~~~~~~  178 (273)
                          ..+..+.++..-.++++...|.+.+|...+-+.....- ..-.+.+.+-.+-++|.++  ........-..-++  
T Consensus       290 ~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~r~R--  367 (414)
T PF12739_consen  290 LPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPSPGLTRFR--  367 (414)
T ss_pred             ccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCCccchhhH--
Confidence                33457888888999999999999888888777775532 1111112444555555555  11100000000000  


Q ss_pred             HHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043          179 ARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDI  222 (273)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~l  222 (273)
                                  ...-.+.-+|.-|...|....|.+|+.....+
T Consensus       368 ------------K~af~~vLAg~~~~~~~~~~~a~rcy~~a~~v  399 (414)
T PF12739_consen  368 ------------KYAFHMVLAGHRYSKAGQKKHALRCYKQALQV  399 (414)
T ss_pred             ------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence                        11122334566788889998888888876543

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.48  E-value=0.33  Score=42.61  Aligned_cols=161  Identities=19%  Similarity=0.171  Sum_probs=89.0

Q ss_pred             HHHHHHhhc-cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 024043           12 EKKAEKKLN-GWGLFGSKYEDAADLFDKA---------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQA   75 (273)
Q Consensus        12 ~~~Aek~~k-~~~~~~~~~~~A~~~~~~a---------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~   75 (273)
                      .++|.|.=+ --++-+.||..|+.+.+..               +-++...|+|++|++.|.-+.+-    .+..  +..
T Consensus        20 ~kkarK~P~Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~----~~~~--~el   93 (557)
T KOG3785|consen   20 IKKARKMPELEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK----DDAP--AEL   93 (557)
T ss_pred             chhhhcCchHHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc----CCCC--ccc
Confidence            566666443 1122236888888887753               56778888999888888766541    1111  223


Q ss_pred             HHHHHHHHhcc-CHHHHHHHHHHH----------HHHHHhcCChhHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHH
Q 024043           76 YVDAAHCYKKT-SSNEAISCLEQA----------VNMFCDIGRLSMAARYYKEIAELYESE---HNIEQTIVFFEKAADM  141 (273)
Q Consensus        76 ~~~~~~~~~~~-~~~eA~~~~~~A----------l~~~~~~g~~~~~a~~l~~lg~~~~~~---g~~~~A~~~y~~Al~~  141 (273)
                      -.+++-|+.-. .|.+|.....+|          ..+..+.+|-...-....+++...+.+   ....=...+|++|+++
T Consensus        94 ~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdv  173 (557)
T KOG3785|consen   94 GVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDV  173 (557)
T ss_pred             chhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence            34455555444 666666555444          223344455444444444444444321   0011123456667777


Q ss_pred             Hhcc--CCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043          142 FQNE--EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA  179 (273)
Q Consensus       142 ~~~~--~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~  179 (273)
                      |...  .++ .--..-..+|.||.++.-|+-+.+.+.--+
T Consensus       174 YkrvL~dn~-ey~alNVy~ALCyyKlDYydvsqevl~vYL  212 (557)
T KOG3785|consen  174 YKRVLQDNP-EYIALNVYMALCYYKLDYYDVSQEVLKVYL  212 (557)
T ss_pred             HHHHHhcCh-hhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence            7653  222 222344678899999998887777655444

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.44  E-value=0.006  Score=33.67  Aligned_cols=30  Identities=17%  Similarity=0.358  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 024043          154 CKQKVAQYAAELEQYHKSIEIYEEIARQSL  183 (273)
Q Consensus       154 ~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~  183 (273)
                      ++.++|.++...|++++|++.|++++...+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P   31 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP   31 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence            466777777777777777777777765444

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=96.40  E-value=0.011  Score=51.25  Aligned_cols=95  Identities=16%  Similarity=0.037  Sum_probs=74.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 024043           38 KAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYK  116 (273)
Q Consensus        38 ~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~  116 (273)
                      +-|+-|-.+|.|++|++||.+++.++....      ..+.+-+.+|.+. ++..|..-+..|+.+-+.      -.++|.
T Consensus       102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~Np------V~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~------Y~KAYS  169 (536)
T KOG4648|consen  102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNP------VYHINRALAYLKQKSFAQAEEDCEAAIALDKL------YVKAYS  169 (536)
T ss_pred             HhhhhhhhccchhHHHHHhhhhhccCCCCc------cchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH------HHHHHH
Confidence            348889999999999999999998875332      3566777778777 888888888888876543      245777


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043          117 EIAELYESEHNIEQTIVFFEKAADMFQN  144 (273)
Q Consensus       117 ~lg~~~~~~g~~~~A~~~y~~Al~~~~~  144 (273)
                      .-|..-..+|...+|-+-|+.++++-..
T Consensus       170 RR~~AR~~Lg~~~EAKkD~E~vL~LEP~  197 (536)
T KOG4648|consen  170 RRMQARESLGNNMEAKKDCETVLALEPK  197 (536)
T ss_pred             HHHHHHHHHhhHHHHHHhHHHHHhhCcc
Confidence            7788888889999999999999887543

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.39  E-value=0.024  Score=49.02  Aligned_cols=111  Identities=13%  Similarity=0.120  Sum_probs=93.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc
Q 024043           27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI  105 (273)
Q Consensus        27 ~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~  105 (273)
                      ++.++-++-|..-||-|...++|..|.++|.+++..  +.+++.--+..|.|-+-|.... +|..|++-+.+|+.+-.. 
T Consensus        75 ~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~--kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~-  151 (390)
T KOG0551|consen   75 GEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK--KCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT-  151 (390)
T ss_pred             CChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh--cCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc-
Confidence            566778888999999999999999999999998764  7888888899999988888777 899999999888876443 


Q ss_pred             CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 024043          106 GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE  145 (273)
Q Consensus       106 g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~  145 (273)
                           -.+++.+-+.++..+.++..|+.+.+..+.+..+.
T Consensus       152 -----h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~  186 (390)
T KOG0551|consen  152 -----HLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEA  186 (390)
T ss_pred             -----hhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence                 24578888899999899999999999887776543

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=96.39  E-value=1.1  Score=43.82  Aligned_cols=210  Identities=12%  Similarity=-0.023  Sum_probs=127.6

Q ss_pred             HhhHHHHHHHHHHhhccccCCC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 024043            5 IARAEEFEKKAEKKLNGWGLFG-SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCY   83 (273)
Q Consensus         5 ~~~a~~l~~~Aek~~k~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~   83 (273)
                      ..||..++.++++-++-.+-+. ++..-.+..  -.+.+-...|++++|.+.-..+.....+.- +..-+.++..+|.+.
T Consensus       431 ~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~a--L~a~val~~~~~e~a~~lar~al~~L~~~~-~~~r~~~~sv~~~a~  507 (894)
T COG2909         431 LAEAETLIARLEHFLKAPMHSRQGDLLAEFQA--LRAQVALNRGDPEEAEDLARLALVQLPEAA-YRSRIVALSVLGEAA  507 (894)
T ss_pred             hHHHHHHHHHHHHHhCcCcccchhhHHHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHhccccc-chhhhhhhhhhhHHH
Confidence            6799999999999888212222 333222222  235566678999999999888887765443 344455677777777


Q ss_pred             h-ccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc--cC-CcccHHHHHHHHH
Q 024043           84 K-KTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN--EE-VTTSANQCKQKVA  159 (273)
Q Consensus        84 ~-~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~--~~-~~~~~~~~~~~~a  159 (273)
                      - ++++++|..+.+++.++.+..+....+..+...-+.++..+|+...|..  .++-...+.  .. .+....-......
T Consensus       508 ~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~--~~~~~~~~~q~l~q~~~~~f~~~~r~~  585 (894)
T COG2909         508 HIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQ--EKAFNLIREQHLEQKPRHEFLVRIRAQ  585 (894)
T ss_pred             HHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHH--HHHHHHHHHHHhhhcccchhHHHHHHH
Confidence            4 4499999999999999999999999999999999999999993333222  222222221  11 1222222223322


Q ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          160 QYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       160 ~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      ...... +++.+..-................-..-.+..+..+....||.++|...+++..
T Consensus       586 ll~~~~-r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~  645 (894)
T COG2909         586 LLRAWL-RLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELE  645 (894)
T ss_pred             HHHHHH-HHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            222222 255555544443211111100011111222355667888999999998888765

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.35  E-value=0.11  Score=41.61  Aligned_cols=123  Identities=7%  Similarity=0.049  Sum_probs=86.5

Q ss_pred             HHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHH
Q 024043           80 AHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKV  158 (273)
Q Consensus        80 ~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~  158 (273)
                      +...+.. ||+..+.-..+.+++.....+       ...+|..+.+.|++.+|..+|++|+.-.=     ......+..+
T Consensus        63 ~~a~~q~ldP~R~~Rea~~~~~~ApTvqn-------r~rLa~al~elGr~~EA~~hy~qalsG~f-----A~d~a~lLgl  130 (251)
T COG4700          63 LMALQQKLDPERHLREATEELAIAPTVQN-------RYRLANALAELGRYHEAVPHYQQALSGIF-----AHDAAMLLGL  130 (251)
T ss_pred             HHHHHHhcChhHHHHHHHHHHhhchhHHH-------HHHHHHHHHHhhhhhhhHHHHHHHhcccc-----CCCHHHHHHH
Confidence            3334444 888777777776666654443       45677777778999999999999885322     2224678899


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043          159 AQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY  219 (273)
Q Consensus       159 a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~  219 (273)
                      +...+..+++..|...+++.....+..     ......+-.+-++-..|.+.+|+..|+..
T Consensus       131 A~Aqfa~~~~A~a~~tLe~l~e~~pa~-----r~pd~~Ll~aR~laa~g~~a~Aesafe~a  186 (251)
T COG4700         131 AQAQFAIQEFAAAQQTLEDLMEYNPAF-----RSPDGHLLFARTLAAQGKYADAESAFEVA  186 (251)
T ss_pred             HHHHHhhccHHHHHHHHHHHhhcCCcc-----CCCCchHHHHHHHHhcCCchhHHHHHHHH
Confidence            999999999999999999986433221     11223344567778889999899888864

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=96.34  E-value=0.63  Score=43.96  Aligned_cols=38  Identities=13%  Similarity=0.176  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 024043           31 DAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLES   68 (273)
Q Consensus        31 ~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~   68 (273)
                      +..-+...++..|-..|.+++|.+.|++++.--....|
T Consensus       246 q~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrD  283 (835)
T KOG2047|consen  246 QLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRD  283 (835)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhh
Confidence            44445555666666777777777777777655444444

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=96.33  E-value=0.13  Score=43.36  Aligned_cols=92  Identities=14%  Similarity=0.059  Sum_probs=83.0

Q ss_pred             cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh
Q 024043           46 AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES  124 (273)
Q Consensus        46 ~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~  124 (273)
                      ...-...++.+.+|.+.+.+.+...-.......+|.-|... ++++|+++|+.+...|++.|-......++..+-.|...
T Consensus       151 ~~hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~  230 (247)
T PF11817_consen  151 VDHSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKR  230 (247)
T ss_pred             cchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            44556789999999999999999888888999999999877 99999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHH
Q 024043          125 EHNIEQTIVFFEK  137 (273)
Q Consensus       125 ~g~~~~A~~~y~~  137 (273)
                      .|+.+..+.+.-+
T Consensus       231 ~~~~~~~l~~~le  243 (247)
T PF11817_consen  231 LGDVEDYLTTSLE  243 (247)
T ss_pred             hCCHHHHHHHHHH
Confidence            9999987776543

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.30  E-value=0.2  Score=42.85  Aligned_cols=124  Identities=11%  Similarity=0.038  Sum_probs=88.2

Q ss_pred             HhhHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 024043            5 IARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYK   84 (273)
Q Consensus         5 ~~~a~~l~~~Aek~~k~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~   84 (273)
                      .++.+.++...+.++..    .|+--+-|.   ..|.+|...|+++.|..+|.+|..+.-+..      ..+...|+++.
T Consensus       135 ~~~~~~l~a~Le~~L~~----nP~d~egW~---~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~------~~~~g~aeaL~  201 (287)
T COG4235         135 EQEMEALIARLETHLQQ----NPGDAEGWD---LLGRAYMALGRASDALLAYRNALRLAGDNP------EILLGLAEALY  201 (287)
T ss_pred             cccHHHHHHHHHHHHHh----CCCCchhHH---HHHHHHHHhcchhHHHHHHHHHHHhCCCCH------HHHHHHHHHHH
Confidence            35678888888888862    233334443   358899999999999999999998853322      23333444432


Q ss_pred             cc----CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC
Q 024043           85 KT----SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV  147 (273)
Q Consensus        85 ~~----~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~  147 (273)
                      ..    ...++...+++++..-.      ...+++.-+|..+...|+|.+|+...+.-++.......
T Consensus       202 ~~a~~~~ta~a~~ll~~al~~D~------~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         202 YQAGQQMTAKARALLRQALALDP------ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             HhcCCcccHHHHHHHHHHHhcCC------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence            22    67888899998886532      23467888888998899999999999988888766554

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=96.29  E-value=0.68  Score=40.42  Aligned_cols=224  Identities=9%  Similarity=0.080  Sum_probs=147.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHHhcCChhHHHHHH
Q 024043           38 KAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT--SSNEAISCLEQAVNMFCDIGRLSMAARYY  115 (273)
Q Consensus        38 ~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~--~~~eA~~~~~~Al~~~~~~g~~~~~a~~l  115 (273)
                      +.|.++...|+..+-.+.....-..+...+. ..++.....+...+...  ..+.-+..+..+++-..+..+....-..-
T Consensus        53 el~~ll~~~~~~~~lr~li~~~Rpf~~~v~K-akaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Le  131 (411)
T KOG1463|consen   53 ELGDLLAKEGDAEELRDLITSLRPFLSSVSK-AKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLE  131 (411)
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            4578889999999888887777777665543 44566666777777665  67788888888888887777766666677


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HHhccch------
Q 024043          116 KEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR--QSLNNNL------  187 (273)
Q Consensus       116 ~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~--~~~~~~~------  187 (273)
                      .++..+|...++|.+|+.....-+.-+...++.....++..-=..+|..+.+..+|...+..+-.  ...-.|+      
T Consensus       132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l  211 (411)
T KOG1463|consen  132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL  211 (411)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence            78888999999999999999888877777666555555666666777888788887776655421  1111110      


Q ss_pred             -----------hhhchh-hHHHHHHHHHHhcCCHHHHHHHHHHHH---------------------------------HH
Q 024043          188 -----------LKYGVK-GHLLNAGICQLCKGDVVAITNALERYQ---------------------------------DI  222 (273)
Q Consensus       188 -----------~~~~~~-~~~~~~gl~~l~~gd~~~A~~~~~~~~---------------------------------~l  222 (273)
                                 ..|.+. .+++.+..-+-..++.++|...+....                                 .+
T Consensus       212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amkav  291 (411)
T KOG1463|consen  212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAV  291 (411)
T ss_pred             HHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHH
Confidence                       011111 122222221222233333333332211                                 45


Q ss_pred             HHHHhhcCHhHHHHHHHhhhccCCCchhHHHHHHHHHHhc
Q 024043          223 AASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKL  262 (273)
Q Consensus       223 l~a~~~~d~~~~~~~~~~~~~~~~ld~~~~~~l~~~~~~~  262 (273)
                      -+|+.++++..|..++.+|..-..-||....=|..+-+++
T Consensus       292 AeA~~nRSLkdF~~AL~~yk~eL~~D~ivr~Hl~~Lyd~l  331 (411)
T KOG1463|consen  292 AEAFGNRSLKDFEKALADYKKELAEDPIVRSHLQSLYDNL  331 (411)
T ss_pred             HHHhcCCcHHHHHHHHHHhHHHHhcChHHHHHHHHHHHHH
Confidence            6688899999999999999988888998876555555444

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.29  E-value=0.58  Score=39.56  Aligned_cols=135  Identities=12%  Similarity=0.134  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHH
Q 024043           74 QAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSAN  152 (273)
Q Consensus        74 ~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~  152 (273)
                      .+.+.+..|+.-. .|.-+++.+.+.++     .++.........+|.+-.+-||.+.|-.++++.-......+......
T Consensus       178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~-----~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~  252 (366)
T KOG2796|consen  178 RVMYSMANCLLGMKEYVLSVDAYHSVIK-----YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKI  252 (366)
T ss_pred             HHHHHHHHHHhcchhhhhhHHHHHHHHH-----hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhH
Confidence            3444555555544 77888888888877     34455567888899999889999999999986555444445556667


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          153 QCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       153 ~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      .+..+.+.++....+|.+|...|.+++.....++       .+..+-.+|.+..|+...|.+.++...
T Consensus       253 ~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~-------~a~NnKALcllYlg~l~DAiK~~e~~~  313 (366)
T KOG2796|consen  253 MVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNA-------VANNNKALCLLYLGKLKDALKQLEAMV  313 (366)
T ss_pred             HHHhhhhhheecccchHHHHHHHhhccccCCCch-------hhhchHHHHHHHHHHHHHHHHHHHHHh
Confidence            7888889999999999999999999875433332       234556788899999988888777654

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.27  E-value=0.015  Score=32.34  Aligned_cols=31  Identities=13%  Similarity=0.296  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 024043          153 QCKQKVAQYAAELEQYHKSIEIYEEIARQSL  183 (273)
Q Consensus       153 ~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~  183 (273)
                      .++..+|.++..+|++++|+++|++++...+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            5788999999999999999999999976543

...

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.25  E-value=0.016  Score=47.78  Aligned_cols=103  Identities=14%  Similarity=0.160  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHH
Q 024043           33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMA  111 (273)
Q Consensus        33 ~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~  111 (273)
                      ++-...-|+.+..-..|+.|+++|.+|+.+..      -.+..|.+-+.||.+. +++.+..-.++|+++-.      ..
T Consensus        10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP------~~~~Y~tnralchlk~~~~~~v~~dcrralql~~------N~   77 (284)
T KOG4642|consen   10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICINP------TVASYYTNRALCHLKLKHWEPVEEDCRRALQLDP------NL   77 (284)
T ss_pred             HHHHHhccccccchhhhchHHHHHHHHHhcCC------CcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcCh------HH
Confidence            33444457778888899999999999997742      2245688889999888 89999999999998754      45


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC
Q 024043          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV  147 (273)
Q Consensus       112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~  147 (273)
                      ++....+|..+.....|++|+..+++|..+++...-
T Consensus        78 vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~  113 (284)
T KOG4642|consen   78 VKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPF  113 (284)
T ss_pred             HHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCC
Confidence            678889999999999999999999999999987654

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.24  E-value=0.016  Score=34.68  Aligned_cols=30  Identities=10%  Similarity=0.141  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 024043          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQ  143 (273)
Q Consensus       114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~  143 (273)
                      ++..+|.+|..+|++++|++.|+++++...
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P   32 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDP   32 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            455666666666666666666666666654

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.19  E-value=0.13  Score=43.97  Aligned_cols=97  Identities=11%  Similarity=0.073  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHhccchh
Q 024043          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE---QYHKSIEIYEEIARQSLNNNLL  188 (273)
Q Consensus       112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g---~y~~A~~~~~~~~~~~~~~~~~  188 (273)
                      ++.|..||.+|..+|+++.|...|.+|+.+....      .+.+..+|.++..+.   .-.++..++++++...+.+.  
T Consensus       156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n------~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~i--  227 (287)
T COG4235         156 AEGWDLLGRAYMALGRASDALLAYRNALRLAGDN------PEILLGLAEALYYQAGQQMTAKARALLRQALALDPANI--  227 (287)
T ss_pred             chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccH--
Confidence            5589999999999999999999999999986433      366778888776543   45788899999986555442  


Q ss_pred             hhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 024043          189 KYGVKGHLLNAGICQLCKGDVVAITNALERYQD  221 (273)
Q Consensus       189 ~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~  221 (273)
                           ..+.-++..+..+||+.+|...|+...+
T Consensus       228 -----ral~lLA~~afe~g~~~~A~~~Wq~lL~  255 (287)
T COG4235         228 -----RALSLLAFAAFEQGDYAEAAAAWQMLLD  255 (287)
T ss_pred             -----HHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence                 2445567778899999999999988643

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=96.19  E-value=0.91  Score=46.50  Aligned_cols=158  Identities=11%  Similarity=0.066  Sum_probs=106.7

Q ss_pred             HHHcCCHHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 024043           43 FKLAKSWDKAGATYVKLANCH--LKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAE  120 (273)
Q Consensus        43 ~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~aa~~~~~~~~~~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~  120 (273)
                      +-..++.++|...+++|+...  ++-........+|.|+-+.|..  -+.-.+.|++|..+..       +-.++..|..
T Consensus      1468 ~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~--eesl~kVFeRAcqycd-------~~~V~~~L~~ 1538 (1710)
T KOG1070|consen 1468 HLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGT--EESLKKVFERACQYCD-------AYTVHLKLLG 1538 (1710)
T ss_pred             HhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCc--HHHHHHHHHHHHHhcc-------hHHHHHHHHH
Confidence            445778899999999988664  1111223344566676666652  2334455666655432       2347788889


Q ss_pred             HHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHH
Q 024043          121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAG  200 (273)
Q Consensus       121 ~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  200 (273)
                      +|...+.+++|.++|+.-+.-|.+      ...+|..+|..+....+-+.|.+++.+++...+..     .+.+..-+-.
T Consensus      1539 iy~k~ek~~~A~ell~~m~KKF~q------~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~-----eHv~~IskfA 1607 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKKFGQ------TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ-----EHVEFISKFA 1607 (1710)
T ss_pred             HHHHhhcchhHHHHHHHHHHHhcc------hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh-----hhHHHHHHHH
Confidence            999989999999999988888762      24678999999999888888889999887544432     2333333344


Q ss_pred             HHHHhcCCHHHHHHHHHHHH
Q 024043          201 ICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       201 l~~l~~gd~~~A~~~~~~~~  220 (273)
                      ..-...||.++++..|+...
T Consensus      1608 qLEFk~GDaeRGRtlfEgll 1627 (1710)
T KOG1070|consen 1608 QLEFKYGDAERGRTLFEGLL 1627 (1710)
T ss_pred             HHHhhcCCchhhHHHHHHHH
Confidence            45567889888888877543

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=96.15  E-value=1.1  Score=45.98  Aligned_cols=151  Identities=12%  Similarity=0.132  Sum_probs=110.6

Q ss_pred             cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh
Q 024043           46 AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES  124 (273)
Q Consensus        46 ~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~  124 (273)
                      -|.-+.-.+.|++|....       ++-.+|..+.-+|... .+++|.++|+.-+.-|.      +.-.+|...|..+..
T Consensus      1510 yG~eesl~kVFeRAcqyc-------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~------q~~~vW~~y~~fLl~ 1576 (1710)
T KOG1070|consen 1510 YGTEESLKKVFERACQYC-------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG------QTRKVWIMYADFLLR 1576 (1710)
T ss_pred             hCcHHHHHHHHHHHHHhc-------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc------chhhHHHHHHHHHhc
Confidence            344445555666665543       3456888888888877 89999999998777665      345689999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHH
Q 024043          125 EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQL  204 (273)
Q Consensus       125 ~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l  204 (273)
                      ..+-+.|.....+|+...+..    ...+...+.|.+-++.|+.+++..+|+-.+...+..       .+.|.-....-.
T Consensus      1577 ~ne~~aa~~lL~rAL~~lPk~----eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKR-------tDlW~VYid~ei 1645 (1710)
T KOG1070|consen 1577 QNEAEAARELLKRALKSLPKQ----EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKR-------TDLWSVYIDMEI 1645 (1710)
T ss_pred             ccHHHHHHHHHHHHHhhcchh----hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccc-------hhHHHHHHHHHH
Confidence            888899999999999988762    334678899999999999999999999887544332       122332233345


Q ss_pred             hcCCHHHHHHHHHHHH
Q 024043          205 CKGDVVAITNALERYQ  220 (273)
Q Consensus       205 ~~gd~~~A~~~~~~~~  220 (273)
                      ..||..-.+..|++..
T Consensus      1646 k~~~~~~vR~lfeRvi 1661 (1710)
T KOG1070|consen 1646 KHGDIKYVRDLFERVI 1661 (1710)
T ss_pred             ccCCHHHHHHHHHHHH
Confidence            6678778888888754

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.14  E-value=0.0048  Score=34.84  Aligned_cols=33  Identities=18%  Similarity=0.344  Sum_probs=25.4

Q ss_pred             HHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHH
Q 024043          134 FFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSI  172 (273)
Q Consensus       134 ~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~  172 (273)
                      +|++|+++.+..      ..++.++|.++...|++++|+
T Consensus         1 ~y~kAie~~P~n------~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNN------AEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCC------HHHHHHHHHHHHHCcCHHhhc
Confidence            477888876432      467888999999999988886

>PRK11906 transcriptional regulator; Provisional

Probab=96.11  E-value=0.24  Score=45.03  Aligned_cols=118  Identities=10%  Similarity=0.072  Sum_probs=85.0

Q ss_pred             CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHHHhccCCcccHHHHHHH
Q 024043           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE---------HNIEQTIVFFEKAADMFQNEEVTTSANQCKQK  157 (273)
Q Consensus        87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~---------g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~  157 (273)
                      +...|+.+|.+|+....-.   ..-+.++..++.++...         .+..+|.+..++|+++-..+      +.++..
T Consensus       273 ~~~~Al~lf~ra~~~~~ld---p~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D------a~a~~~  343 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQ---TLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD------GKILAI  343 (458)
T ss_pred             HHHHHHHHHHHHhhcccCC---cccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC------HHHHHH
Confidence            6678888999988322111   11234555566665543         24567788888888875433      477889


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          158 VAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       158 ~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      +|.++...++++.|+..|+++....++.       ...++..|.++...|+.++|.+.+++..
T Consensus       344 ~g~~~~~~~~~~~a~~~f~rA~~L~Pn~-------A~~~~~~~~~~~~~G~~~~a~~~i~~al  399 (458)
T PRK11906        344 MGLITGLSGQAKVSHILFEQAKIHSTDI-------ASLYYYRALVHFHNEKIEEARICIDKSL  399 (458)
T ss_pred             HHHHHHhhcchhhHHHHHHHHhhcCCcc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            9999999999999999999997655544       3355667888889999999999999865

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.06  E-value=0.4  Score=43.93  Aligned_cols=123  Identities=15%  Similarity=0.123  Sum_probs=85.1

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc----------CCh----
Q 024043           44 KLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI----------GRL----  108 (273)
Q Consensus        44 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~----------g~~----  108 (273)
                      ....++..-+.+-.+|+++...      -+.+|.-++.  ... ...+|.++|++|++.-+..          |..    
T Consensus       179 WRERnp~aRIkaA~eALei~pd------CAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~  250 (539)
T PF04184_consen  179 WRERNPQARIKAAKEALEINPD------CADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW  250 (539)
T ss_pred             HhcCCHHHHHHHHHHHHHhhhh------hhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence            3456777888888888887632      2334433321  111 4678888888887765432          111    


Q ss_pred             -----hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 024043          109 -----SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI  178 (273)
Q Consensus       109 -----~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~  178 (273)
                           .--..+...+|++..++|+.++|++.++.-+..+...    ..-.+..++..++..++.|.++..++.+-
T Consensus       251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~----~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL----DNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc----chhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence                 1124456789999999999999999999887766532    22357889999999999999999988775

The molecular function of this protein is uncertain.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.05  E-value=0.74  Score=38.61  Aligned_cols=173  Identities=16%  Similarity=0.183  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChh
Q 024043           31 DAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLS  109 (273)
Q Consensus        31 ~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~  109 (273)
                      .+..+|.+ |..-...|+|++|++.|+....-+  -..+.. =++...++.++.+. ++++|+...++=+.+|....+  
T Consensus        33 p~~~LY~~-g~~~L~~gn~~~A~~~fe~l~~~~--p~s~~~-~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n--  106 (254)
T COG4105          33 PASELYNE-GLTELQKGNYEEAIKYFEALDSRH--PFSPYS-EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN--  106 (254)
T ss_pred             CHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcC--CCCccc-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC--
Confidence            57788888 555566899999999999877333  333333 44555566666555 999999999998888765544  


Q ss_pred             HHHHHHHHHHHHHHhc-----CC---HHHHHHHHHHHHHHHhccCCccc-----------HHHHHHHHHHHHHHhcCHHH
Q 024043          110 MAARYYKEIAELYESE-----HN---IEQTIVFFEKAADMFQNEEVTTS-----------ANQCKQKVAQYAAELEQYHK  170 (273)
Q Consensus       110 ~~a~~l~~lg~~~~~~-----g~---~~~A~~~y~~Al~~~~~~~~~~~-----------~~~~~~~~a~~~~~~g~y~~  170 (273)
                       +.-++.-.|.++...     .|   ..+|+.-+++-+.-|+.+.-...           .+.--..+|..|.+.|.|.-
T Consensus       107 -~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~A  185 (254)
T COG4105         107 -ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVA  185 (254)
T ss_pred             -hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence             455566666665543     22   34566666666666665432111           12223456778999999999


Q ss_pred             HHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHH
Q 024043          171 SIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITN  214 (273)
Q Consensus       171 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~  214 (273)
                      |+..+++++......+    .+.+.+..+..++...|-.+.|..
T Consensus       186 A~nR~~~v~e~y~~t~----~~~eaL~~l~eaY~~lgl~~~a~~  225 (254)
T COG4105         186 AINRFEEVLENYPDTS----AVREALARLEEAYYALGLTDEAKK  225 (254)
T ss_pred             HHHHHHHHHhcccccc----chHHHHHHHHHHHHHhCChHHHHH
Confidence            9999999986644432    355677777778888876655544

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=95.92  E-value=0.0038  Score=35.29  Aligned_cols=34  Identities=24%  Similarity=0.516  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHH
Q 024043           94 CLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIV  133 (273)
Q Consensus        94 ~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~  133 (273)
                      +|++|+++.+...      .++.++|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~------~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNA------EAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCH------HHHHHHHHHHHHCcCHHhhcC
Confidence            4788888877664      499999999999999999863

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.90  E-value=0.018  Score=34.39  Aligned_cols=34  Identities=9%  Similarity=0.005  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccc
Q 024043          153 QCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNN  186 (273)
Q Consensus       153 ~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~  186 (273)
                      .++..+|.+|..+|++++|++.|++++...++++
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~   35 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDP   35 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            4678899999999999999999999998877764

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=95.83  E-value=0.077  Score=43.42  Aligned_cols=27  Identities=7%  Similarity=0.182  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043          153 QCKQKVAQYAAELEQYHKSIEIYEEIA  179 (273)
Q Consensus       153 ~~~~~~a~~~~~~g~y~~A~~~~~~~~  179 (273)
                      +++.-+|..+...|+.++|..+|.-++
T Consensus       238 EtyFYL~K~~l~~G~~~~A~~LfKLai  264 (297)
T COG4785         238 ETYFYLGKYYLSLGDLDEATALFKLAV  264 (297)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            445555555555555556655555554

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.78  E-value=0.25  Score=45.71  Aligned_cols=99  Identities=13%  Similarity=0.055  Sum_probs=65.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 024043           38 KAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYK  116 (273)
Q Consensus        38 ~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~  116 (273)
                      ..|.++...|+.++|++.|+++.......+.  -..-++.+++.++--. ++++|.+++.+..+.     +.+.-|-...
T Consensus       272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Q--l~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-----s~WSka~Y~Y  344 (468)
T PF10300_consen  272 FEGRLERLKGNLEEAIESFERAIESQSEWKQ--LHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-----SKWSKAFYAY  344 (468)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHhccchhhHHh--HHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-----cccHHHHHHH
Confidence            4588888888999999999888854433332  2345677778777655 888888888776552     2334556666


Q ss_pred             HHHHHHHhcCCH-------HHHHHHHHHHHHHHh
Q 024043          117 EIAELYESEHNI-------EQTIVFFEKAADMFQ  143 (273)
Q Consensus       117 ~lg~~~~~~g~~-------~~A~~~y~~Al~~~~  143 (273)
                      -.|-++...|+.       ++|.+++.++-.+..
T Consensus       345 ~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~  378 (468)
T PF10300_consen  345 LAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ  378 (468)
T ss_pred             HHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence            677777777777       555555555555444

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.76  E-value=0.64  Score=44.00  Aligned_cols=142  Identities=17%  Similarity=0.194  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc------CHHHHHHHHHHHHHHHH---hcCChhHHHHHHHHHH
Q 024043           49 WDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT------SSNEAISCLEQAVNMFC---DIGRLSMAARYYKEIA  119 (273)
Q Consensus        49 ~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~------~~~eA~~~~~~Al~~~~---~~g~~~~~a~~l~~lg  119 (273)
                      ...|...|..+++.-        -..+...+|.||...      |++.|+.+|+.|..-+.   ..|    -..+...+|
T Consensus       228 ~~~a~~~~~~~a~~g--------~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~----~~~a~~~lg  295 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLG--------HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG----LPPAQYGLG  295 (552)
T ss_pred             hhHHHHHHHHHHhhc--------chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc----CCccccHHH
Confidence            345555665555432        234556678887554      89999999999988422   122    223577889


Q ss_pred             HHHHhcC-----CHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHhccchhhhc
Q 024043          120 ELYESEH-----NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE---QYHKSIEIYEEIARQSLNNNLLKYG  191 (273)
Q Consensus       120 ~~~~~~g-----~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g---~y~~A~~~~~~~~~~~~~~~~~~~~  191 (273)
                      .+|....     ++..|+.+|.+|.+.    +.    ..+...+|.++..-.   ++.+|.++|..+..         .|
T Consensus       296 ~~Y~~g~~~~~~d~~~A~~~~~~aA~~----g~----~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~---------~G  358 (552)
T KOG1550|consen  296 RLYLQGLGVEKIDYEKALKLYTKAAEL----GN----PDAQYLLGVLYETGTKERDYRRAFEYYSLAAK---------AG  358 (552)
T ss_pred             HHHhcCCCCccccHHHHHHHHHHHHhc----CC----chHHHHHHHHHHcCCccccHHHHHHHHHHHHH---------cC
Confidence            9988842     677888888888765    22    355777888876544   67899999999863         23


Q ss_pred             hhhHHHHHHHHHHh-c---CCHHHHHHHHHHH
Q 024043          192 VKGHLLNAGICQLC-K---GDVVAITNALERY  219 (273)
Q Consensus       192 ~~~~~~~~gl~~l~-~---gd~~~A~~~~~~~  219 (273)
                      ....++++++|+.. .   -+...|...+.+.
T Consensus       359 ~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~a  390 (552)
T KOG1550|consen  359 HILAIYRLALCYELGLGVERNLELAFAYYKKA  390 (552)
T ss_pred             ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHH
Confidence            44456677777543 2   2566666555553

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.74  E-value=1.1  Score=37.98  Aligned_cols=86  Identities=16%  Similarity=0.189  Sum_probs=55.3

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHhccchhhhchhhH
Q 024043          120 ELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAE----LEQYHKSIEIYEEIARQSLNNNLLKYGVKGH  195 (273)
Q Consensus       120 ~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~----~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~  195 (273)
                      .++.++.+.+-|....++..++-+        -.++.++|..++.    .+++..|.-+|++.-.+....       ...
T Consensus       145 qI~lk~~r~d~A~~~lk~mq~ide--------d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T-------~~l  209 (299)
T KOG3081|consen  145 QILLKMHRFDLAEKELKKMQQIDE--------DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPT-------PLL  209 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccch--------HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCC-------hHH
Confidence            344444566666666666555533        2345566665544    347999999999875432222       223


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          196 LLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       196 ~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      +.....||+.+|+++.|...++...
T Consensus       210 lnG~Av~~l~~~~~eeAe~lL~eaL  234 (299)
T KOG3081|consen  210 LNGQAVCHLQLGRYEEAESLLEEAL  234 (299)
T ss_pred             HccHHHHHHHhcCHHHHHHHHHHHH
Confidence            4455678999999999999888754

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.73  E-value=0.49  Score=39.54  Aligned_cols=104  Identities=13%  Similarity=0.057  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc------CCcccH------HHHHHHHHHHHHHhcCHHHHHHHHHH
Q 024043          110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE------EVTTSA------NQCKQKVAQYAAELEQYHKSIEIYEE  177 (273)
Q Consensus       110 ~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~------~~~~~~------~~~~~~~a~~~~~~g~y~~A~~~~~~  177 (273)
                      .+..++..-|.-+...|+|.+|...|..|+...+..      +++.+.      .-.+.+++.|+...|+|-++++....
T Consensus       176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se  255 (329)
T KOG0545|consen  176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE  255 (329)
T ss_pred             hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence            345567777888888899999999999999887642      333222      34578888999999999999999999


Q ss_pred             HHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          178 IARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      ++...+++      ++ ++++-+-+|....+..+|+.-|....
T Consensus       256 iL~~~~~n------vK-A~frRakAhaa~Wn~~eA~~D~~~vL  291 (329)
T KOG0545|consen  256 ILRHHPGN------VK-AYFRRAKAHAAVWNEAEAKADLQKVL  291 (329)
T ss_pred             HHhcCCch------HH-HHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            98765554      33 56777777777778888877776654

>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway

Probab=95.71  E-value=0.44  Score=49.31  Aligned_cols=149  Identities=16%  Similarity=0.110  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-----C--------------------
Q 024043           33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-----S--------------------   87 (273)
Q Consensus        33 ~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-----~--------------------   87 (273)
                      .......|++|..+|+|.+|+..|..|+++.+..+|+-..|.+++.++.|..-.     +                    
T Consensus       242 gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~~~  321 (1185)
T PF08626_consen  242 GRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTSSS  321 (1185)
T ss_pred             hhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccCcc
Confidence            455666799999999999999999999999999999999999998877653111     1                    


Q ss_pred             --------------------------------HHHHHHHHHHHHHHHHhcC-------ChhHHHHHHHHHHHHHHhcC--
Q 024043           88 --------------------------------SNEAISCLEQAVNMFCDIG-------RLSMAARYYKEIAELYESEH--  126 (273)
Q Consensus        88 --------------------------------~~eA~~~~~~Al~~~~~~g-------~~~~~a~~l~~lg~~~~~~g--  126 (273)
                                                      +..-.+.+++++.+|.+..       -..-...+..+++.++....  
T Consensus       322 s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~  401 (1185)
T PF08626_consen  322 SPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLS  401 (1185)
T ss_pred             CcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcc
Confidence                                            1122234555566655543       22234566667777776666  


Q ss_pred             ------------------CHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 024043          127 ------------------NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ  181 (273)
Q Consensus       127 ------------------~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~  181 (273)
                                        .-.++.++..+|..+.-..=.......++..+|.+|..+|-..++.=+.+.++..
T Consensus       402 ~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~  474 (1185)
T PF08626_consen  402 DNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQ  474 (1185)
T ss_pred             cchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence                              6788888888888876533234555688899999999999887777777666533

To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.62  E-value=0.02  Score=31.47  Aligned_cols=31  Identities=13%  Similarity=0.326  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (273)
Q Consensus       114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~  144 (273)
                      ++.++|.++...|++++|+..|++.++-|+.
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            6778899999999999999999999887764

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=95.58  E-value=0.23  Score=42.62  Aligned_cols=131  Identities=11%  Similarity=0.136  Sum_probs=82.9

Q ss_pred             HHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhccCCcccHHH
Q 024043           76 YVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES-EHNIEQTIVFFEKAADMFQNEEVTTSANQ  153 (273)
Q Consensus        76 ~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~-~g~~~~A~~~y~~Al~~~~~~~~~~~~~~  153 (273)
                      |.......++. ..+.|...|.+|.    +.+.  ..-.+|...|.+-.. .++.+.|...|+.++..|...      ..
T Consensus         4 ~i~~m~~~~r~~g~~~aR~vF~~a~----~~~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~------~~   71 (280)
T PF05843_consen    4 WIQYMRFMRRTEGIEAARKVFKRAR----KDKR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD------PD   71 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH----CCCC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-------HH
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHH----cCCC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC------HH
Confidence            33444444444 6677888888885    2222  222467777888444 577888999999999998654      35


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043          154 CKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDI  222 (273)
Q Consensus       154 ~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~l  222 (273)
                      .+..+.+.+...++.+.|..+|++++......    ...+..|.+...--...||........+++..+
T Consensus        72 ~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~----~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   72 FWLEYLDFLIKLNDINNARALFERAISSLPKE----KQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCH----HHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHhcCch----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            67788888999999999999999997432221    112223333333334568888888887777543

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.52  E-value=0.043  Score=31.85  Aligned_cols=30  Identities=17%  Similarity=0.248  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 024043          152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQ  181 (273)
Q Consensus       152 ~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~  181 (273)
                      +.++.++|.+|..+|+|++|..++++++..
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            467999999999999999999999999643

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=95.48  E-value=1.1  Score=38.36  Aligned_cols=134  Identities=19%  Similarity=0.242  Sum_probs=91.9

Q ss_pred             CCCHHHHHHHHHHHHH------------HHHH----cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc---
Q 024043           26 GSKYEDAADLFDKAAN------------SFKL----AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT---   86 (273)
Q Consensus        26 ~~~~~~A~~~~~~a~~------------~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~---   86 (273)
                      .+++..+...+..+..            +|..    ..++.+|++.|..+++.    |    ......++|.+|...   
T Consensus        54 ~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~----g----~~~a~~~lg~~~~~G~gv  125 (292)
T COG0790          54 PPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD----G----LAEALFNLGLMYANGRGV  125 (292)
T ss_pred             cccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc----c----cHHHHHhHHHHHhcCCCc
Confidence            4899999999988763            1111    23466677766643322    2    234566789998774   


Q ss_pred             --CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHhccCCcccHHHHHHH
Q 024043           87 --SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH-------NIEQTIVFFEKAADMFQNEEVTTSANQCKQK  157 (273)
Q Consensus        87 --~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g-------~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~  157 (273)
                        |+.+|..+|++|...    |+... +.+...+|.+|..-.       +..+|+.+|.+|.+..        ...+...
T Consensus       126 ~~d~~~A~~~~~~Aa~~----g~~~a-~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--------~~~a~~~  192 (292)
T COG0790         126 PLDLVKALKYYEKAAKL----GNVEA-ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--------NPDAQLL  192 (292)
T ss_pred             ccCHHHHHHHHHHHHHc----CChhH-HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--------CHHHHHH
Confidence              899999999999764    44333 556788888888721       2336777777777664        3466788


Q ss_pred             HHHHHHH----hcCHHHHHHHHHHHHH
Q 024043          158 VAQYAAE----LEQYHKSIEIYEEIAR  180 (273)
Q Consensus       158 ~a~~~~~----~g~y~~A~~~~~~~~~  180 (273)
                      +|.+|..    ..++.+|+..|.++..
T Consensus       193 lg~~y~~G~Gv~~d~~~A~~wy~~Aa~  219 (292)
T COG0790         193 LGRMYEKGLGVPRDLKKAFRWYKKAAE  219 (292)
T ss_pred             HHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence            8887765    2389999999999964

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=95.40  E-value=0.075  Score=46.30  Aligned_cols=98  Identities=17%  Similarity=0.131  Sum_probs=77.0

Q ss_pred             HHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHH
Q 024043           76 YVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQC  154 (273)
Q Consensus        76 ~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~  154 (273)
                      +-+-|+-|.+. .|++|++||.+++.++.-+-      ..+.|-+..|..+..+..|-.-+..|+.+-+      .-..+
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~Np------V~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~------~Y~KA  167 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNP------VYHINRALAYLKQKSFAQAEEDCEAAIALDK------LYVKA  167 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCc------cchhhHHHHHHHHHHHHHHHHhHHHHHHhhH------HHHHH
Confidence            44567777666 99999999999999887443      3677788888888899999999999988854      33466


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          155 KQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       155 ~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                      |.+.+.....+|...+|-+-++.++...+.+
T Consensus       168 YSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~  198 (536)
T KOG4648|consen  168 YSRRMQARESLGNNMEAKKDCETVLALEPKN  198 (536)
T ss_pred             HHHHHHHHHHHhhHHHHHHhHHHHHhhCccc
Confidence            7788888888999999999998887554443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=95.40  E-value=0.57  Score=41.56  Aligned_cols=125  Identities=10%  Similarity=-0.002  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCChhHHHH
Q 024043           34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAAR  113 (273)
Q Consensus        34 ~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~  113 (273)
                      ++-...+.-+-.+|+.++|.+....++.-   ..++.     +.....+..-.++..=+...++.+.-.   ++..   .
T Consensus       264 ~l~~~~a~~li~l~~~~~A~~~i~~~Lk~---~~D~~-----L~~~~~~l~~~d~~~l~k~~e~~l~~h---~~~p---~  329 (400)
T COG3071         264 ELVVAYAERLIRLGDHDEAQEIIEDALKR---QWDPR-----LCRLIPRLRPGDPEPLIKAAEKWLKQH---PEDP---L  329 (400)
T ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHh---ccChh-----HHHHHhhcCCCCchHHHHHHHHHHHhC---CCCh---h
Confidence            33344456667778888887777666543   33332     222222222225665555555555433   3222   6


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA  179 (273)
Q Consensus       114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~  179 (273)
                      .+..+|.++...+.+.+|..+++.|+..-       .....+..+|.++.++|+..+|-.++++++
T Consensus       330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~-------~s~~~~~~la~~~~~~g~~~~A~~~r~e~L  388 (400)
T COG3071         330 LLSTLGRLALKNKLWGKASEALEAALKLR-------PSASDYAELADALDQLGEPEEAEQVRREAL  388 (400)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHhcC-------CChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            89999999999999999999999888763       224568889999999999999999999986

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.36  E-value=0.86  Score=40.69  Aligned_cols=159  Identities=12%  Similarity=0.145  Sum_probs=100.5

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHH
Q 024043           95 LEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEI  174 (273)
Q Consensus        95 ~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~  174 (273)
                      ++.=++-|+.++-....-+++..+|..|...|+.+.|+++|-++-+.-...+   .....+.++-.|.+.+|+|..-..+
T Consensus       133 L~~eLk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~k---hvInm~ln~i~VSI~~~nw~hv~sy  209 (466)
T KOG0686|consen  133 LDNELKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAK---HVINMCLNLILVSIYMGNWGHVLSY  209 (466)
T ss_pred             HHHHHHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchH---HHHHHHHHHHHHHHhhcchhhhhhH
Confidence            4444566666666666678899999999999999999999999877765443   3345667777888889999887777


Q ss_pred             HHHHHHHH-hccchh-hhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH------------------HHHHHHhhcCHhHH
Q 024043          175 YEEIARQS-LNNNLL-KYGVKGHLLNAGICQLCKGDVVAITNALERYQ------------------DIAASMDEEDIAKF  234 (273)
Q Consensus       175 ~~~~~~~~-~~~~~~-~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~------------------~ll~a~~~~d~~~~  234 (273)
                      -.++.... ....+. ....+ ..--+|++++..+++..|..+|-...                  ..+.|+..-|...+
T Consensus       210 ~~~A~st~~~~~~~~q~v~~k-l~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~L  288 (466)
T KOG0686|consen  210 ISKAESTPDANENLAQEVPAK-LKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDL  288 (466)
T ss_pred             HHHHHhCchhhhhHHHhcCcc-hHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHH
Confidence            76664220 000010 11111 22235888999888887766654311                  23445545555444


Q ss_pred             HHHH---HhhhccCCCchhHHHHHHH
Q 024043          235 TDVV---KEFDSMTPLDPWKTTLLLR  257 (273)
Q Consensus       235 ~~~~---~~~~~~~~ld~~~~~~l~~  257 (273)
                      ...+   ..|..+..|+|-+..+|-+
T Consensus       289 k~~vi~n~~Fk~flel~Pqlr~il~~  314 (466)
T KOG0686|consen  289 KLNVIKNESFKLFLELEPQLREILFK  314 (466)
T ss_pred             HHHHHcchhhhhHHhcChHHHHHHHH
Confidence            4222   4466667777777655543

>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]

Probab=95.31  E-value=1.8  Score=37.83  Aligned_cols=190  Identities=11%  Similarity=0.149  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHH
Q 024043           53 GATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQT  131 (273)
Q Consensus        53 ~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A  131 (273)
                      .+.|..-..-++..=++......+....   +.. |.++|+++.++..+-......+.....+...+|.++...|+..++
T Consensus        58 l~lY~NFvsefe~kINplslvei~l~~~---~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~  134 (380)
T KOG2908|consen   58 LQLYLNFVSEFETKINPLSLVEILLVVS---EQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEI  134 (380)
T ss_pred             HHHHHHHHHHHhhccChHHHHHHHHHHH---HHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHH
Confidence            3444444444443334544444433222   222 899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCC-cccHHHHHHHHHHHHH-HhcCHHHHHHHHHHHH-HHHhccchhhhchhhHHHHHHHHHHhcCC
Q 024043          132 IVFFEKAADMFQNEEV-TTSANQCKQKVAQYAA-ELEQYHKSIEIYEEIA-RQSLNNNLLKYGVKGHLLNAGICQLCKGD  208 (273)
Q Consensus       132 ~~~y~~Al~~~~~~~~-~~~~~~~~~~~a~~~~-~~g~y~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gl~~l~~gd  208 (273)
                      .+.....-.+...... +...-..+..++.-|. ..|++...-...-+-+ ...+.+ .+...-....+-+|+.-+ .||
T Consensus       135 kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk~~~d~a~yYr~~L~YL~~~d~~~-l~~se~~~lA~~L~~aAL-LGe  212 (380)
T KOG2908|consen  135 KKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYYKKIGDFASYYRHALLYLGCSDIDD-LSESEKQDLAFDLSLAAL-LGE  212 (380)
T ss_pred             HHHHHHHHHHHhcccCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHhccccccc-cCHHHHHHHHHHHHHHHH-hcc
Confidence            9999988887776554 3435555666665444 4566655444333322 111111 111111111222333211 222


Q ss_pred             ----HHH--HHHHHHH--------HHHHHHHHhhcCHhHHHHHHHhhhccCCC
Q 024043          209 ----VVA--ITNALER--------YQDIAASMDEEDIAKFTDVVKEFDSMTPL  247 (273)
Q Consensus       209 ----~~~--A~~~~~~--------~~~ll~a~~~~d~~~~~~~~~~~~~~~~l  247 (273)
                          +..  +.-.++.        ..+++-|++.||..+|.+....+..+--|
T Consensus       213 ~iyNfGELL~HPilesL~gT~~eWL~dll~Afn~Gdl~~f~~l~~~~~~~p~L  265 (380)
T KOG2908|consen  213 NIYNFGELLAHPILESLKGTNREWLKDLLIAFNSGDLKRFESLKGVWGKQPDL  265 (380)
T ss_pred             ccccHHHHHhhHHHHHhcCCcHHHHHHHHHHhccCCHHHHHHHHHHhccCchH
Confidence                111  1112222        22788899999999999999988773334

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=95.28  E-value=1.2  Score=42.57  Aligned_cols=109  Identities=15%  Similarity=0.156  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHH------HH---HhcCChhHHHH-------HHHHHHHHHHhcCCHHHH
Q 024043           69 KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVN------MF---CDIGRLSMAAR-------YYKEIAELYESEHNIEQT  131 (273)
Q Consensus        69 ~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~------~~---~~~g~~~~~a~-------~l~~lg~~~~~~g~~~~A  131 (273)
                      ..+.-.++.++|..+... ..++|.++|.+.-.      .+   ...|+....++       .+-.+|..+...|.-++|
T Consensus       792 D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qA  871 (1189)
T KOG2041|consen  792 DEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQA  871 (1189)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHH
Confidence            445556677778777666 77777777765411      11   11122222222       344666667666777777


Q ss_pred             HHHHHH-------------------HHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 024043          132 IVFFEK-------------------AADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI  178 (273)
Q Consensus       132 ~~~y~~-------------------Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~  178 (273)
                      ++.|-+                   |+++.....-+ .....+-+-+.-+...++.-+||+.++++
T Consensus       872 V~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~~l~-qv~tliak~aaqll~~~~~~eaIe~~Rka  936 (1189)
T KOG2041|consen  872 VEAYLRRSLPKAAVHTCVELNQWGEAVELAQRFQLP-QVQTLIAKQAAQLLADANHMEAIEKDRKA  936 (1189)
T ss_pred             HHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence            766643                   44444433222 22222233334455567888888888776

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.21  E-value=0.27  Score=41.01  Aligned_cols=108  Identities=12%  Similarity=0.132  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc------CCHH------HHHHHHHHHHHHHhcc-CHHHHHHHHH
Q 024043           30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKL------ESKH------EAAQAYVDAAHCYKKT-SSNEAISCLE   96 (273)
Q Consensus        30 ~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~------~aa~~~~~~~~~~~~~-~~~eA~~~~~   96 (273)
                      -+|.....+-||-+...|+|.+|..+|..|+.+.+.+      |++.      -..-.+.|...|+... +|-+++++..
T Consensus       175 mkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~s  254 (329)
T KOG0545|consen  175 MKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCS  254 (329)
T ss_pred             hhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHH
Confidence            4577888888999999999999999999999988743      2322      1223456777777666 7888888777


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 024043           97 QAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ  143 (273)
Q Consensus        97 ~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~  143 (273)
                      ..+..+..+      -++|..-|.++..-=+..+|..-+.+++++-.
T Consensus       255 eiL~~~~~n------vKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp  295 (329)
T KOG0545|consen  255 EILRHHPGN------VKAYFRRAKAHAAVWNEAEAKADLQKVLELDP  295 (329)
T ss_pred             HHHhcCCch------HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence            776655433      34677777777666677777777777777644

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.17  E-value=0.44  Score=41.62  Aligned_cols=150  Identities=17%  Similarity=0.077  Sum_probs=98.0

Q ss_pred             CCC-CCHHHHHHHHHHHH--------------HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-C
Q 024043           24 LFG-SKYEDAADLFDKAA--------------NSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-S   87 (273)
Q Consensus        24 ~~~-~~~~~A~~~~~~a~--------------~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~   87 (273)
                      .|+ |++.+|+....+..              ..+...|+.+.-.+.+++.+.-.  ..+.+--.-+.--.+.+..+. -
T Consensus       113 ~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~GmyaFgL~E~g~  190 (491)
T KOG2610|consen  113 LWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGMYAFGLEECGI  190 (491)
T ss_pred             hhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHHHHhhHHHhcc
Confidence            476 77777777666653              23444566666666555544321  111111111222233344444 7


Q ss_pred             HHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcC
Q 024043           88 SNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQ  167 (273)
Q Consensus        88 ~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~  167 (273)
                      |++|.+.-++|+++.+-.      +.+-...+.+++..|++.++.++..+.-+..++..  ..+...+-..|.++++.+.
T Consensus       191 y~dAEk~A~ralqiN~~D------~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~--mlasHNyWH~Al~~iE~ae  262 (491)
T KOG2610|consen  191 YDDAEKQADRALQINRFD------CWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSW--MLASHNYWHTALFHIEGAE  262 (491)
T ss_pred             chhHHHHHHhhccCCCcc------hHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhh--HHHhhhhHHHHHhhhcccc
Confidence            899999999999886532      33555678888888999999999988776666322  3455677888999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 024043          168 YHKSIEIYEEIARQSL  183 (273)
Q Consensus       168 y~~A~~~~~~~~~~~~  183 (273)
                      |+.|+++|.+-+-.++
T Consensus       263 ye~aleIyD~ei~k~l  278 (491)
T KOG2610|consen  263 YEKALEIYDREIWKRL  278 (491)
T ss_pred             hhHHHHHHHHHHHHHh
Confidence            9999999999874433

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.99  E-value=0.054  Score=49.22  Aligned_cols=88  Identities=8%  Similarity=-0.001  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh-cc--C---------CcccHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 024043          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQ-NE--E---------VTTSANQCKQKVAQYAAELEQYHKSIEIYEEI  178 (273)
Q Consensus       111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~-~~--~---------~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~  178 (273)
                      ....++|+|-++...|.|.-++.+|.+|+.-+. +.  |         .......++.++|..|...|++-.|.++|.++
T Consensus       282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a  361 (696)
T KOG2471|consen  282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA  361 (696)
T ss_pred             hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence            345678999999999999999999999996222 11  1         01123478899999999999999999999999


Q ss_pred             HHHHhccchhhhchhhHHHHHHHHHHh
Q 024043          179 ARQSLNNNLLKYGVKGHLLNAGICQLC  205 (273)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~gl~~l~  205 (273)
                      ......+|.       .|+++..|+..
T Consensus       362 v~vfh~nPr-------lWLRlAEcCim  381 (696)
T KOG2471|consen  362 VHVFHRNPR-------LWLRLAECCIM  381 (696)
T ss_pred             HHHHhcCcH-------HHHHHHHHHHH
Confidence            877666653       56777666543

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=94.67  E-value=1.2  Score=36.08  Aligned_cols=60  Identities=17%  Similarity=0.266  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHH
Q 024043          110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSI  172 (273)
Q Consensus       110 ~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~  172 (273)
                      ..+.....+|..|.+ -++++++..+.++++++....+..  .+++..++.++..+|+++.|-
T Consensus       139 ~t~elq~aLAtyY~k-rD~~Kt~~ll~~~L~l~~~~~~~n--~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  139 ETAELQYALATYYTK-RDPEKTIQLLLRALELSNPDDNFN--PEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             CCHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhcCCCCCCC--HHHHHHHHHHHHHhcchhhhh
Confidence            347788899999987 899999999999999998775433  578999999999999999874

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=94.62  E-value=2.5  Score=35.92  Aligned_cols=114  Identities=13%  Similarity=-0.020  Sum_probs=72.7

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh
Q 024043           45 LAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES  124 (273)
Q Consensus        45 ~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~  124 (273)
                      .+++|++|++.....+...-+.+....++..-.-+.++|.+.                   +...... ...++..++..
T Consensus         2 ~~kky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~-------------------~~~~~~~-~~~rl~~l~~~   61 (260)
T PF04190_consen    2 KQKKYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKS-------------------EDPVDEE-SIARLIELISL   61 (260)
T ss_dssp             HTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-------------------T---SHH-HHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHc-------------------CCCCCHH-HHHHHHHHHHh
Confidence            467899999999998888888887766666665556666543                   2211111 22344555554


Q ss_pred             cCC-HHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 024043          125 EHN-IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI  178 (273)
Q Consensus       125 ~g~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~  178 (273)
                      ... -.+-..+..+|+......+.+.+....+..+|..+.+-|+|.+|..+|-..
T Consensus        62 ~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~  116 (260)
T PF04190_consen   62 FPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG  116 (260)
T ss_dssp             S-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred             CCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc
Confidence            422 223567778888888444556788899999999999999999999888554

; PDB: 3LKU_E 2WPV_G.

>smart00028 TPR Tetratricopeptide repeats

Probab=94.61  E-value=0.043  Score=28.92  Aligned_cols=28  Identities=14%  Similarity=0.377  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043          114 YYKEIAELYESEHNIEQTIVFFEKAADM  141 (273)
Q Consensus       114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~  141 (273)
                      ++..+|.++...+++++|+.+|++++.+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            4556666666666666666666666654

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.60  E-value=3.7  Score=37.78  Aligned_cols=153  Identities=16%  Similarity=0.121  Sum_probs=104.3

Q ss_pred             CHHHHHHHHHHHHHHHhc-c-CHHHHHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHh
Q 024043           68 SKHEAAQAYVDAAHCYKK-T-SSNEAISCLEQAVNMFCDIGRL-SMAARYYKEIAELYESEH-NIEQTIVFFEKAADMFQ  143 (273)
Q Consensus        68 ~~~~aa~~~~~~~~~~~~-~-~~~eA~~~~~~Al~~~~~~g~~-~~~a~~l~~lg~~~~~~g-~~~~A~~~y~~Al~~~~  143 (273)
                      ...-.|++..++|.+... . +.+.|..++++|..+....+.+ +---.+..-++.+|.... ....+....++|+++.+
T Consensus        41 s~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq  120 (629)
T KOG2300|consen   41 SFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQ  120 (629)
T ss_pred             hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhc
Confidence            344566667777776644 4 8899999999999999999998 666778888899998888 77888999999998865


Q ss_pred             ccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHH--HHHHHHhcCCHHHHHHHHHHHHH
Q 024043          144 NEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLN--AGICQLCKGDVVAITNALERYQD  221 (273)
Q Consensus       144 ~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~--~gl~~l~~gd~~~A~~~~~~~~~  221 (273)
                        +.+.+....+.+++.++.-..++..|++++.- +....+.....| . ..++.  .+.++....|...-...++....
T Consensus       121 --~~p~wsckllfQLaql~~idkD~~sA~elLav-ga~sAd~~~~~y-l-r~~ftls~~~ll~me~d~~dV~~ll~~~~q  195 (629)
T KOG2300|consen  121 --SVPYWSCKLLFQLAQLHIIDKDFPSALELLAV-GAESADHICFPY-L-RMLFTLSMLMLLIMERDDYDVEKLLQRCGQ  195 (629)
T ss_pred             --CCchhhHHHHHHHHHHHhhhccchhHHHHHhc-cccccchhhhHH-H-HHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence              45888888889999999999999999998432 111111000001 0 11222  23344445565566666666655


Q ss_pred             HHHH
Q 024043          222 IAAS  225 (273)
Q Consensus       222 ll~a  225 (273)
                      +.+.
T Consensus       196 i~~n  199 (629)
T KOG2300|consen  196 IWQN  199 (629)
T ss_pred             HHhc
Confidence            5543

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.59  E-value=0.073  Score=30.82  Aligned_cols=32  Identities=28%  Similarity=0.399  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043          113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (273)
Q Consensus       113 ~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~  144 (273)
                      .++..+|.+-...++|++|++-|++|+++.++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~   33 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEE   33 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            35556666666666666666666666666543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=94.56  E-value=0.83  Score=46.38  Aligned_cols=151  Identities=12%  Similarity=0.061  Sum_probs=118.1

Q ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHH-
Q 024043           28 KYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLE--SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFC-  103 (273)
Q Consensus        28 ~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~-  103 (273)
                      ...+-..+|...+.++...+++++|+..-.+|.-+.++.-  +....+..|.+++...... ....|+..+.++..+.. 
T Consensus       968 ~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~L 1047 (1236)
T KOG1839|consen  968 LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLL 1047 (1236)
T ss_pred             cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcc
Confidence            3445667788889999999999999999999998887543  6677888888888766555 78888888888877653 


Q ss_pred             hcC-ChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 024043          104 DIG-RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV--TTSANQCKQKVAQYAAELEQYHKSIEIYEEI  178 (273)
Q Consensus       104 ~~g-~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~--~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~  178 (273)
                      ..| +....+..-.+++.++...++++.|+.+.+.|+.+.....-  ...-+.++..++.++...+++..|+......
T Consensus      1048 s~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t 1125 (1236)
T KOG1839|consen 1048 SSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVT 1125 (1236)
T ss_pred             ccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhH
Confidence            222 46667778899999988889999999999999998776532  2344577788888888888888888777665

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=94.53  E-value=3.4  Score=37.09  Aligned_cols=172  Identities=12%  Similarity=0.126  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHH
Q 024043           34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLE-SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMA  111 (273)
Q Consensus        34 ~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~  111 (273)
                      .+|.-...+|...++...-..++..-+... .++ +..+.+...+-+..+|..- .|+.|-..-.++  .|.+.......
T Consensus       170 k~~fy~~l~~E~~~~l~~~rs~l~~~lrtA-tLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~--~~pe~~snne~  246 (493)
T KOG2581|consen  170 KLYFYLYLSYELEGRLADIRSFLHALLRTA-TLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKS--VYPEAASNNEW  246 (493)
T ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHHHh-hhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcc--cCccccccHHH
Confidence            344445667777777666555555554443 444 6777888888788888655 566666555443  24444555588


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHHHhccchhhh
Q 024043          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI-ARQSLNNNLLKY  190 (273)
Q Consensus       112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~-~~~~~~~~~~~~  190 (273)
                      |+.+.-+|.+..-+++|..|.+++.+|+....+.......-.+...+-.+-.-+|++++=.- |.+. ..++        
T Consensus       247 ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiPers~-F~Qp~~~ks--------  317 (493)
T KOG2581|consen  247 ARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIPERSV-FRQPGMRKS--------  317 (493)
T ss_pred             HHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCcchhh-hcCccHHHH--------
Confidence            99999999999999999999999999998887643221111222222233345677664322 2221 1111        


Q ss_pred             chhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          191 GVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       191 ~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                       .. .|+.+.- -...||..+....+++|.
T Consensus       318 -L~-~Yf~Lt~-AVr~gdlkkF~~~leq~k  344 (493)
T KOG2581|consen  318 -LR-PYFKLTQ-AVRLGDLKKFNETLEQFK  344 (493)
T ss_pred             -HH-HHHHHHH-HHHHhhHHHHHHHHHHHH
Confidence             11 1222211 124678888888888876

>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=94.49  E-value=2.7  Score=37.95  Aligned_cols=123  Identities=11%  Similarity=-0.010  Sum_probs=101.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHH
Q 024043           24 LFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMF  102 (273)
Q Consensus        24 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~  102 (273)
                      .+|+++..-++-.-+-+.++....++..|.....+..--..+..+....+.++..++.++.+. .+-.+..+.-.++...
T Consensus       264 ~~g~d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~  343 (482)
T KOG4322|consen  264 WFGGDYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKR  343 (482)
T ss_pred             hhcchHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence            456788888876666788888888899999988888877777778888888999999999877 6677777777777777


Q ss_pred             HhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q 024043          103 CDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE  146 (273)
Q Consensus       103 ~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~  146 (273)
                      .+-......+..-..++..+.-+|.+++|+.....|+...-..|
T Consensus       344 sey~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~G  387 (482)
T KOG4322|consen  344 SEYSLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQG  387 (482)
T ss_pred             HHhccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhcc
Confidence            77777788888888899999999999999999999998876554

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=94.48  E-value=0.13  Score=40.83  Aligned_cols=52  Identities=25%  Similarity=0.316  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHhcc
Q 024043           88 SNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE----HNIEQTIVFFEKAADMFQNE  145 (273)
Q Consensus        88 ~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~----g~~~~A~~~y~~Al~~~~~~  145 (273)
                      +++|++-|++|+.+-+...+      ++..+|.+|..+    .+..+|-++|++|.+.|+..
T Consensus        51 iedAisK~eeAL~I~P~~hd------Alw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkA  106 (186)
T PF06552_consen   51 IEDAISKFEEALKINPNKHD------ALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKA  106 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HH------HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCchHH------HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH
Confidence            45666667777766655443      677777777665    45667777788877777653

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=94.32  E-value=0.55  Score=40.31  Aligned_cols=130  Identities=11%  Similarity=0.145  Sum_probs=90.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-c-CHHHHHHHHHHHHHHHHhcCChhHHHHH
Q 024043           37 DKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK-T-SSNEAISCLEQAVNMFCDIGRLSMAARY  114 (273)
Q Consensus        37 ~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~-~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~  114 (273)
                      .+..+..+..+..+.|...|.+|..    .+.  ..-.+|...|.+-.. . ++..|...|+.++..|....+      .
T Consensus         5 i~~m~~~~r~~g~~~aR~vF~~a~~----~~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~------~   72 (280)
T PF05843_consen    5 IQYMRFMRRTEGIEAARKVFKRARK----DKR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD------F   72 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC----CCC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH------H
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHc----CCC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH------H
Confidence            3445566666678899999999862    111  122467777777433 3 888899999999999876654      4


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 024043          115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ  181 (273)
Q Consensus       115 l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~  181 (273)
                      +..-...+...++.+.|...|++++......   .....+|......-..-|+.+....++++....
T Consensus        73 ~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~---~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   73 WLEYLDFLIKLNDINNARALFERAISSLPKE---KQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHCCTSSCH---HHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHhcCch---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4444456667799999999999999773322   213467888888888899999999999888644

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.25  E-value=2.2  Score=36.13  Aligned_cols=135  Identities=13%  Similarity=0.079  Sum_probs=96.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 024043           40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI  118 (273)
Q Consensus        40 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~l  118 (273)
                      .+++.-.|.|.-..+.+.+..+-     ++...-.....+|.+--.. |.+.|..++++.-..............+..+.
T Consensus       184 ~~~llG~kEy~iS~d~~~~vi~~-----~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  184 ANCLLGMKEYVLSVDAYHSVIKY-----YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHhcchhhhhhHHHHHHHHHh-----CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            45555666777777777766652     2222233445566665444 88888888887776666667777778889999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       119 g~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                      +.+|.-..++..|...|.+.+..-.      +-...-++-|.|..-+|+...|++..+.+..+.++.
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D~------~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMDP------RNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             hhheecccchHHHHHHHhhccccCC------CchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            9999999999999999987665422      113456788899999999999999999987655543

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=93.75  E-value=2.8  Score=33.36  Aligned_cols=85  Identities=12%  Similarity=0.127  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHhcCH---HHHHHHHHH-------HHHHHhccchhhhchhhHHHHHHHHHHh----cCCHHHHHHHHH
Q 024043          152 NQCKQKVAQYAAELEQY---HKSIEIYEE-------IARQSLNNNLLKYGVKGHLLNAGICQLC----KGDVVAITNALE  217 (273)
Q Consensus       152 ~~~~~~~a~~~~~~g~y---~~A~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~gl~~l~----~gd~~~A~~~~~  217 (273)
                      .+.+.+-|.++.++.++   .++.++++.       ++...+..       .+.+.++|.++..    .+|..+|...|+
T Consensus        25 adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~-------hdAlw~lGnA~ts~A~l~~d~~~A~~~F~   97 (186)
T PF06552_consen   25 ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK-------HDALWCLGNAYTSLAFLTPDTAEAEEYFE   97 (186)
T ss_dssp             HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT--------HHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch-------HHHHHHHHHHHHHHHhhcCChHHHHHHHH
Confidence            57788888877766433   344445544       44444332       2456677777654    357777888888


Q ss_pred             HHHHHHHH-H-hhcCHhHHHHHHHhhhc
Q 024043          218 RYQDIAAS-M-DEEDIAKFTDVVKEFDS  243 (273)
Q Consensus       218 ~~~~ll~a-~-~~~d~~~~~~~~~~~~~  243 (273)
                      +....+.. + .+.+.+.++..+.-..+
T Consensus        98 kA~~~FqkAv~~~P~ne~Y~ksLe~~~k  125 (186)
T PF06552_consen   98 KATEYFQKAVDEDPNNELYRKSLEMAAK  125 (186)
T ss_dssp             HHHHHHHHHHHH-TT-HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence            76644442 2 33555677777766544

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=93.51  E-value=4.8  Score=36.66  Aligned_cols=128  Identities=14%  Similarity=0.060  Sum_probs=93.8

Q ss_pred             HHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHHHhcc--
Q 024043           76 YVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNI-------EQTIVFFEKAADMFQNE--  145 (273)
Q Consensus        76 ~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~-------~~A~~~y~~Al~~~~~~--  145 (273)
                      ...+|+++.-. ||+-|...|+-+..=|....-+...|-++..+|.++...+..       +....+++.|+..|...  
T Consensus       211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~  290 (414)
T PF12739_consen  211 MRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSAL  290 (414)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhc
Confidence            34677777666 999999999999998887777888888888888888877633       47778899999999883  


Q ss_pred             ---CCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHH
Q 024043          146 ---EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQ  203 (273)
Q Consensus       146 ---~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~  203 (273)
                         ..+..+..+....+.++...|.|.+|...+-+.....+.......+..-.+-+++.|+
T Consensus       291 ~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~  351 (414)
T PF12739_consen  291 PRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCY  351 (414)
T ss_pred             cccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhh
Confidence               2234666788888888889999999998888776553322111222333444667777

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>smart00028 TPR Tetratricopeptide repeats

Probab=93.46  E-value=0.15  Score=26.65  Aligned_cols=28  Identities=18%  Similarity=0.348  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 024043          153 QCKQKVAQYAAELEQYHKSIEIYEEIAR  180 (273)
Q Consensus       153 ~~~~~~a~~~~~~g~y~~A~~~~~~~~~  180 (273)
                      .++..+|.++..+|++++|+..|++++.
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~   29 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALE   29 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            4578899999999999999999998864

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=93.39  E-value=0.32  Score=44.40  Aligned_cols=116  Identities=11%  Similarity=0.033  Sum_probs=75.7

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcC-C-HHH--HHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHH---hcC------
Q 024043           41 NSFKLAKSWDKAGATYVKLANCHLKLE-S-KHE--AAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFC---DIG------  106 (273)
Q Consensus        41 ~~~~~~~~~~~A~~~~~~a~~~~~~~~-~-~~~--aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~---~~g------  106 (273)
                      +.+...|++.+|...+...-- ....| - ...  .....+++|-++... .|.-+.-+|.+|+.-++   ..|      
T Consensus       248 q~eY~~gn~~kA~KlL~~sni-~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~  326 (696)
T KOG2471|consen  248 QLEYAHGNHPKAMKLLLVSNI-HKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT  326 (696)
T ss_pred             HHHHHhcchHHHHHHHHhccc-ccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence            455556666666555443321 11111 0 011  111236788888777 88889999999996332   223      


Q ss_pred             ---ChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHH
Q 024043          107 ---RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAA  163 (273)
Q Consensus       107 ---~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~  163 (273)
                         ........+.|.|..|...|++-.|.+||.+|+..|....      ..|.++|.+.+
T Consensus       327 ~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nP------rlWLRlAEcCi  380 (696)
T KOG2471|consen  327 FTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNP------RLWLRLAECCI  380 (696)
T ss_pred             eehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCc------HHHHHHHHHHH
Confidence               1122356899999999999999999999999999997543      56778887643

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=93.19  E-value=1  Score=30.50  Aligned_cols=34  Identities=15%  Similarity=0.331  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (273)
Q Consensus       111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~  144 (273)
                      .|..+...|.-....|+|++|+.+|.+|++++..
T Consensus         5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~   38 (76)
T cd02681           5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY   38 (76)
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            3445555666677779999999999999999865

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=92.96  E-value=1.5  Score=29.85  Aligned_cols=58  Identities=10%  Similarity=0.068  Sum_probs=35.1

Q ss_pred             CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC
Q 024043           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV  147 (273)
Q Consensus        87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~  147 (273)
                      ...+|+..++++++-.++   +...=.++.-+..+|...|+|.+.+.+..+=+++.++.++
T Consensus        21 ~~~~Al~~W~~aL~k~~~---~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled   78 (80)
T PF10579_consen   21 ETQQALQKWRKALEKITD---REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELED   78 (80)
T ss_pred             hHHHHHHHHHHHHhhcCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            556666666666655443   2234445556666666667777777766666666665544

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.85  E-value=2.6  Score=38.76  Aligned_cols=74  Identities=12%  Similarity=0.110  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH-------HHHH
Q 024043          152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ-------DIAA  224 (273)
Q Consensus       152 ~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~-------~ll~  224 (273)
                      ...|.++|+.....|+++-|.++|+++.               .+-.+.+.|+..||.+.-.+..+...       .+..
T Consensus       347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~  411 (443)
T PF04053_consen  347 PEKWKQLGDEALRQGNIELAEECYQKAK---------------DFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQA  411 (443)
T ss_dssp             HHHHHHHHHHHHHTTBHHHHHHHHHHCT----------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhhc---------------CccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHH
Confidence            3589999999999999999999999873               12345566777888766555554433       4455


Q ss_pred             HHhhcCHhHHHHHHHh
Q 024043          225 SMDEEDIAKFTDVVKE  240 (273)
Q Consensus       225 a~~~~d~~~~~~~~~~  240 (273)
                      ++-.||.+..-+.+.+
T Consensus       412 ~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  412 ALLLGDVEECVDLLIE  427 (443)
T ss_dssp             HHHHT-HHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHH
Confidence            5666777766666654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.73  E-value=0.28  Score=28.39  Aligned_cols=28  Identities=21%  Similarity=0.342  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 024043          153 QCKQKVAQYAAELEQYHKSIEIYEEIAR  180 (273)
Q Consensus       153 ~~~~~~a~~~~~~g~y~~A~~~~~~~~~  180 (273)
                      .++..+|.+....++|++|++-|++++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~   29 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALE   29 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            5789999999999999999999999964

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=92.58  E-value=6  Score=33.80  Aligned_cols=145  Identities=17%  Similarity=0.135  Sum_probs=93.5

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-----CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 024043           45 LAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-----SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIA  119 (273)
Q Consensus        45 ~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-----~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg  119 (273)
                      ..+++..+...+.++..    .++.    .....++.+|...     ++.+|+.+|+.+.+    .|    .+....++|
T Consensus        53 ~~~~~~~a~~~~~~a~~----~~~~----~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~----~g----~~~a~~~lg  116 (292)
T COG0790          53 YPPDYAKALKSYEKAAE----LGDA----AALALLGQMYGAGKGVSRDKTKAADWYRCAAA----DG----LAEALFNLG  116 (292)
T ss_pred             ccccHHHHHHHHHHhhh----cCCh----HHHHHHHHHHHhccCccccHHHHHHHHHHHhh----cc----cHHHHHhHH
Confidence            45677888888877776    2222    6777888888766     78889998884432    22    244667799


Q ss_pred             HHHHhc----CCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHh----c-C--HHHHHHHHHHHHHHHhccchh
Q 024043          120 ELYESE----HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL----E-Q--YHKSIEIYEEIARQSLNNNLL  188 (273)
Q Consensus       120 ~~~~~~----g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~----g-~--y~~A~~~~~~~~~~~~~~~~~  188 (273)
                      .+|..-    .++.+|..+|.+|.+.--...     ..+...+|.+|..-    + .  ...|+..|.++....      
T Consensus       117 ~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a-----~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~------  185 (292)
T COG0790         117 LMYANGRGVPLDLVKALKYYEKAAKLGNVEA-----ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG------  185 (292)
T ss_pred             HHHhcCCCcccCHHHHHHHHHHHHHcCChhH-----HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc------
Confidence            999883    389999999999987632111     34466777776653    2 2  337888888885322      


Q ss_pred             hhchhhHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 024043          189 KYGVKGHLLNAGICQLC----KGDVVAITNALERY  219 (273)
Q Consensus       189 ~~~~~~~~~~~gl~~l~----~gd~~~A~~~~~~~  219 (273)
                         .....+++|.+|..    .-|..+|..-+...
T Consensus       186 ---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~A  217 (292)
T COG0790         186 ---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKA  217 (292)
T ss_pred             ---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH
Confidence               22345666766533    22666666665553

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.27  E-value=2.8  Score=39.78  Aligned_cols=147  Identities=12%  Similarity=0.142  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHH
Q 024043           88 SNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE-----HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYA  162 (273)
Q Consensus        88 ~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~-----g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~  162 (273)
                      ..+|..+|+.+.+.    |+    ......+|.+|..-     .+.+.|+.+++.|++-+...-. ..-..+...+|.+|
T Consensus       228 ~~~a~~~~~~~a~~----g~----~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~-~~~~~a~~~lg~~Y  298 (552)
T KOG1550|consen  228 LSEAFKYYREAAKL----GH----SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAAT-KGLPPAQYGLGRLY  298 (552)
T ss_pred             hhHHHHHHHHHHhh----cc----hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHh-hcCCccccHHHHHH
Confidence            35677777766543    33    33556677777663     4899999999999984222111 01123567788888


Q ss_pred             HHh----c-CHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcC---CHHHHHHHHHHHH---------HHHHH
Q 024043          163 AEL----E-QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKG---DVVAITNALERYQ---------DIAAS  225 (273)
Q Consensus       163 ~~~----g-~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~g---d~~~A~~~~~~~~---------~ll~a  225 (273)
                      .+.    . ++..|+.+|.++...         +.....+.+|.++..-.   |+.+|.+.+....         .+-..
T Consensus       299 ~~g~~~~~~d~~~A~~~~~~aA~~---------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~  369 (552)
T KOG1550|consen  299 LQGLGVEKIDYEKALKLYTKAAEL---------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALC  369 (552)
T ss_pred             hcCCCCccccHHHHHHHHHHHHhc---------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            874    2 789999999998632         23345567787776544   5666666666543         11112


Q ss_pred             Hhh--cCHhHHHHHHHhhhccCCCchhHH
Q 024043          226 MDE--EDIAKFTDVVKEFDSMTPLDPWKT  252 (273)
Q Consensus       226 ~~~--~d~~~~~~~~~~~~~~~~ld~~~~  252 (273)
                      +..  |-......++.-|.++-...+|.+
T Consensus       370 y~~G~gv~r~~~~A~~~~k~aA~~g~~~A  398 (552)
T KOG1550|consen  370 YELGLGVERNLELAFAYYKKAAEKGNPSA  398 (552)
T ss_pred             HHhCCCcCCCHHHHHHHHHHHHHccChhh
Confidence            222  344455566666666666555554

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=91.92  E-value=14  Score=37.99  Aligned_cols=185  Identities=12%  Similarity=0.017  Sum_probs=128.4

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HcC-CHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc-
Q 024043           30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHL-KLE-SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI-  105 (273)
Q Consensus        30 ~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~-~~~-~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~-  105 (273)
                      .+|-+.+ +.|..-...|.|.++.+ .-+++.++. ..| -..+.+.+|..++.++... +.++|+..-++|.-+..+. 
T Consensus       930 ~~a~~~~-e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~ 1007 (1236)
T KOG1839|consen  930 SEAKDSP-EQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVL 1007 (1236)
T ss_pred             chhhhhh-hhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhc
Confidence            3443333 34666666778888888 777777775 333 2467788999999998777 9999999999998888654 


Q ss_pred             -CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-C-CcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-
Q 024043          106 -GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-E-VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ-  181 (273)
Q Consensus       106 -g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~-~-~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~-  181 (273)
                       -+.......+.+++......+....|+..+.+|+.+.--. + ++..-+.+..+++.++...++++.|+++.+.+... 
T Consensus      1008 g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1008 GKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred             cCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence             3567778899999988888889999999999998875422 1 23444567789999999999999999999999632 


Q ss_pred             --HhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHH
Q 024043          182 --SLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER  218 (273)
Q Consensus       182 --~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~  218 (273)
                        ..+.....  ....+..++..+-+.+|+..|......
T Consensus      1088 ~~v~g~~~l~--~~~~~~~~a~l~~s~~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1088 KKVLGPKELE--TALSYHALARLFESMKDFRNALEHEKV 1124 (1236)
T ss_pred             hhhcCccchh--hhhHHHHHHHHHhhhHHHHHHHHHHhh
Confidence              22221111  112222334445556666655554443

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=91.68  E-value=0.12  Score=48.08  Aligned_cols=98  Identities=15%  Similarity=0.120  Sum_probs=77.4

Q ss_pred             HHHHHHHhcc--CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHH
Q 024043           77 VDAAHCYKKT--SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQC  154 (273)
Q Consensus        77 ~~~~~~~~~~--~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~  154 (273)
                      .+.+-+|.+.  ++..|+.|+.+|+..-....+     ..+.+++.++...|-.-.|-.++.+++.+.-      +..-.
T Consensus       610 ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~-----v~~v~la~~~~~~~~~~da~~~l~q~l~~~~------sepl~  678 (886)
T KOG4507|consen  610 LNEAGLYWRAVGNSTFAIACLQRALNLAPLQQD-----VPLVNLANLLIHYGLHLDATKLLLQALAINS------SEPLT  678 (886)
T ss_pred             eecccceeeecCCcHHHHHHHHHHhccChhhhc-----ccHHHHHHHHHHhhhhccHHHHHHHHHhhcc------cCchH
Confidence            3444455544  999999999999876554433     5678999999988988999999999999972      22356


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          155 KQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       155 ~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                      +..+|..+..+.+.+.|++.|+.+.....++
T Consensus       679 ~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~  709 (886)
T KOG4507|consen  679 FLSLGNAYLALKNISGALEAFRQALKLTTKC  709 (886)
T ss_pred             HHhcchhHHHHhhhHHHHHHHHHHHhcCCCC
Confidence            7888999999999999999999998665554

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=91.67  E-value=0.48  Score=29.62  Aligned_cols=34  Identities=18%  Similarity=0.239  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccc
Q 024043          153 QCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNN  186 (273)
Q Consensus       153 ~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~  186 (273)
                      +|+..+|..+.++|+|++|..+.+.++...++++
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~   35 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR   35 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence            5778888899999999999999999988877764

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=91.51  E-value=9.9  Score=33.98  Aligned_cols=192  Identities=14%  Similarity=0.129  Sum_probs=117.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 024043           40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI  118 (273)
Q Consensus        40 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~l  118 (273)
                      |-.-...|+|.+|-....++.+..      ..-..+|.-++.+.... |.+.+-.+..++.+.   .|+....  ++...
T Consensus        91 gl~~l~eG~~~qAEkl~~rnae~~------e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~---~~~~~l~--v~ltr  159 (400)
T COG3071          91 GLLKLFEGDFQQAEKLLRRNAEHG------EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL---AGDDTLA--VELTR  159 (400)
T ss_pred             HHHHHhcCcHHHHHHHHHHhhhcC------cchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc---CCCchHH--HHHHH
Confidence            444455678887777666655443      22345666677777655 888888888887654   2332222  45566


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----------------
Q 024043          119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ-----------------  181 (273)
Q Consensus       119 g~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~-----------------  181 (273)
                      +.+....|+++.|..-..+++++-...      ..++.-...+|+.+|+|.....+..+....                 
T Consensus       160 arlll~~~d~~aA~~~v~~ll~~~pr~------~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~  233 (400)
T COG3071         160 ARLLLNRRDYPAARENVDQLLEMTPRH------PEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWE  233 (400)
T ss_pred             HHHHHhCCCchhHHHHHHHHHHhCcCC------hHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHH
Confidence            778888899999999998888775432      355666677888888888777655443110                 


Q ss_pred             -----HhccchhhhchhhHHH--------------HHHHHHHhcCCHHHHHHHHHHHH---------HHHHHHhhcCHhH
Q 024043          182 -----SLNNNLLKYGVKGHLL--------------NAGICQLCKGDVVAITNALERYQ---------DIAASMDEEDIAK  233 (273)
Q Consensus       182 -----~~~~~~~~~~~~~~~~--------------~~gl~~l~~gd~~~A~~~~~~~~---------~ll~a~~~~d~~~  233 (273)
                           ...+. ..-+.+..|-              ....-+...||.+.|.+.+.+..         .++..+.-+|.+.
T Consensus       234 glL~q~~~~~-~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~  312 (400)
T COG3071         234 GLLQQARDDN-GSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEP  312 (400)
T ss_pred             HHHHHHhccc-cchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchH
Confidence                 00000 0001111111              11112345678888877776633         5666667788888


Q ss_pred             HHHHHHhhhccCCCch
Q 024043          234 FTDVVKEFDSMTPLDP  249 (273)
Q Consensus       234 ~~~~~~~~~~~~~ld~  249 (273)
                      ...++....+-.+-||
T Consensus       313 l~k~~e~~l~~h~~~p  328 (400)
T COG3071         313 LIKAAEKWLKQHPEDP  328 (400)
T ss_pred             HHHHHHHHHHhCCCCh
Confidence            8887777777777666

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=91.45  E-value=5.1  Score=38.22  Aligned_cols=28  Identities=14%  Similarity=0.313  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043          152 NQCKQKVAQYAAELEQYHKSIEIYEEIA  179 (273)
Q Consensus       152 ~~~~~~~a~~~~~~g~y~~A~~~~~~~~  179 (273)
                      ..++...|..+.+..++++|.+.|-+++
T Consensus       804 ~dVy~pyaqwLAE~DrFeEAqkAfhkAG  831 (1081)
T KOG1538|consen  804 DDVYMPYAQWLAENDRFEEAQKAFHKAG  831 (1081)
T ss_pred             ccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence            3556666766777777777777776664

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=91.44  E-value=2.1  Score=32.40  Aligned_cols=73  Identities=16%  Similarity=0.226  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccc
Q 024043          110 MAARYYKEIAELYESE---HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNN  186 (273)
Q Consensus       110 ~~a~~l~~lg~~~~~~---g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~  186 (273)
                      -...+..+++.++...   .+..+-+.+++..+.    ...+....+|+.-+|.-+.++++|++++.+....+...++++
T Consensus        30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~----~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~  105 (149)
T KOG3364|consen   30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK----SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR  105 (149)
T ss_pred             chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh----hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence            3445778888888775   345667777766554    334455568999999999999999999999999887766654

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=91.36  E-value=0.35  Score=45.09  Aligned_cols=92  Identities=11%  Similarity=0.099  Sum_probs=70.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHH
Q 024043          117 EIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHL  196 (273)
Q Consensus       117 ~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~  196 (273)
                      ..|..+...|++..|+.|+..|+-......     ...+.++|.++++.|-...|-..+.+++......++       .+
T Consensus       612 ~aglywr~~gn~~~a~~cl~~a~~~~p~~~-----~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl-------~~  679 (886)
T KOG4507|consen  612 EAGLYWRAVGNSTFAIACLQRALNLAPLQQ-----DVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPL-------TF  679 (886)
T ss_pred             cccceeeecCCcHHHHHHHHHHhccChhhh-----cccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCch-------HH
Confidence            344444556999999999999997765433     345789999999999889999999888755433333       45


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          197 LNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       197 ~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      +..|..++...|+.+|.++|.+..
T Consensus       680 ~~~g~~~l~l~~i~~a~~~~~~a~  703 (886)
T KOG4507|consen  680 LSLGNAYLALKNISGALEAFRQAL  703 (886)
T ss_pred             HhcchhHHHHhhhHHHHHHHHHHH
Confidence            567888899999999999998865

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=91.32  E-value=15  Score=35.63  Aligned_cols=28  Identities=21%  Similarity=0.472  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024043           34 DLFDKAANSFKLAKSWDKAGATYVKLAN   61 (273)
Q Consensus        34 ~~~~~a~~~~~~~~~~~~A~~~~~~a~~   61 (273)
                      +.++..|.-|.....|++|.++|.+...
T Consensus       797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~  824 (1189)
T KOG2041|consen  797 DAFRNIGETFAEMMEWEEAAKYYSYCGD  824 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            4555667777777788888888776543

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=91.15  E-value=12  Score=34.57  Aligned_cols=162  Identities=12%  Similarity=0.083  Sum_probs=91.3

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH-HHhcc---CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 024043           45 LAKSWDKAGATYVKLANCHLKLE-SKHEAAQAYVDAAH-CYKKT---SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIA  119 (273)
Q Consensus        45 ~~~~~~~A~~~~~~a~~~~~~~~-~~~~aa~~~~~~~~-~~~~~---~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg  119 (273)
                      ..|+.+.-.+.|++|+.-..... .....--.|.=+-. +|.+.   |++.+.+.|+.++++.+...  ..-|+.+..-|
T Consensus       334 ~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkk--FtFaKiWlmyA  411 (677)
T KOG1915|consen  334 SVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKK--FTFAKIWLMYA  411 (677)
T ss_pred             hcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCccc--chHHHHHHHHH
Confidence            35677777777777764332211 11111122222222 23333   88899999999998765332  22223332222


Q ss_pred             HHHHh---------------------------------cCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc
Q 024043          120 ELYES---------------------------------EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE  166 (273)
Q Consensus       120 ~~~~~---------------------------------~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g  166 (273)
                      .....                                 +++++.....|++=++..      +....++.+.|.+-..+|
T Consensus       412 ~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~------Pe~c~~W~kyaElE~~Lg  485 (677)
T KOG1915|consen  412 QFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS------PENCYAWSKYAELETSLG  485 (677)
T ss_pred             HHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------hHhhHHHHHHHHHHHHhh
Confidence            22222                                 244555555555544442      234577888898888999


Q ss_pred             CHHHHHHHHHHHHHHHhccchhhhchhhHHHHH-HHHHHhcCCHHHHHHHHHHHH
Q 024043          167 QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNA-GICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       167 ~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      +.+.|..+|+-++....      ....+.+.+. ..--...|.+++|+..++++.
T Consensus       486 dtdRaRaifelAi~qp~------ldmpellwkaYIdFEi~~~E~ekaR~LYerlL  534 (677)
T KOG1915|consen  486 DTDRARAIFELAISQPA------LDMPELLWKAYIDFEIEEGEFEKARALYERLL  534 (677)
T ss_pred             hHHHHHHHHHHHhcCcc------cccHHHHHHHhhhhhhhcchHHHHHHHHHHHH
Confidence            99999999988863211      1123333333 222356788999999999876

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=91.11  E-value=13  Score=34.43  Aligned_cols=134  Identities=10%  Similarity=0.059  Sum_probs=75.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHhccCC-cccHHHHHHHHHHHH---HHhcCHHHHHHHHHHHHHHHhccchhhhchh
Q 024043          118 IAELYESEHNIEQTIVFFEKAADMFQNEEV-TTSANQCKQKVAQYA---AELEQYHKSIEIYEEIARQSLNNNLLKYGVK  193 (273)
Q Consensus       118 lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~-~~~~~~~~~~~a~~~---~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~  193 (273)
                      .-.+.+..|+.++-.+.|++|+.-.+.... ..+...++.-+--++   ....+.+.+..+|+.++..-+..   ++...
T Consensus       328 ylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHk---kFtFa  404 (677)
T KOG1915|consen  328 YLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHK---KFTFA  404 (677)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcc---cchHH
Confidence            334445568999999999999976654321 222223333332222   34578999999999998643332   44444


Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHH------HHHHHH-----hhcCHhHHHHHHHhhhccCCCchhHHHHHHH
Q 024043          194 GHLLNAGICQLCKGDVVAITNALERYQ------DIAASM-----DEEDIAKFTDVVKEFDSMTPLDPWKTTLLLR  257 (273)
Q Consensus       194 ~~~~~~gl~~l~~gd~~~A~~~~~~~~------~ll~a~-----~~~d~~~~~~~~~~~~~~~~ld~~~~~~l~~  257 (273)
                      ..++....--+.+.|...|++.+...-      +++..+     ..+..+.++..-..|   ...+|-.-..+.+
T Consensus       405 KiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkf---le~~Pe~c~~W~k  476 (677)
T KOG1915|consen  405 KIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKF---LEFSPENCYAWSK  476 (677)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHH---HhcChHhhHHHHH
Confidence            444444444456678888888877643      333322     334455555544444   4444444444443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=90.97  E-value=9.3  Score=32.68  Aligned_cols=83  Identities=16%  Similarity=0.187  Sum_probs=45.1

Q ss_pred             CHHHHHHHHHHHHHHHH--hcCChhHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhc-c---CCc----ccHHHHH
Q 024043           87 SSNEAISCLEQAVNMFC--DIGRLSMAARYYKEIAELYESEH-NIEQTIVFFEKAADMFQN-E---EVT----TSANQCK  155 (273)
Q Consensus        87 ~~~eA~~~~~~Al~~~~--~~g~~~~~a~~l~~lg~~~~~~g-~~~~A~~~y~~Al~~~~~-~---~~~----~~~~~~~  155 (273)
                      |++.|..++.|+-.+..  ........+..+.++|.-....+ +++.|+.++++|.++.+. .   ...    .....++
T Consensus         8 ~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL   87 (278)
T PF08631_consen    8 DLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSIL   87 (278)
T ss_pred             CHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHH
Confidence            55555555555554442  11122334556666666666666 777777777777777533 1   110    1223556


Q ss_pred             HHHHHHHHHhcCHH
Q 024043          156 QKVAQYAAELEQYH  169 (273)
Q Consensus       156 ~~~a~~~~~~g~y~  169 (273)
                      ..++.++...+.++
T Consensus        88 ~~La~~~l~~~~~~  101 (278)
T PF08631_consen   88 RLLANAYLEWDTYE  101 (278)
T ss_pred             HHHHHHHHcCCChH
Confidence            66666666665543

It is also involved in sporulation [].

>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]

Probab=90.73  E-value=1.4  Score=37.17  Aligned_cols=94  Identities=12%  Similarity=0.105  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHhcc----CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCc
Q 024043           73 AQAYVDAAHCYKKT----SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT  148 (273)
Q Consensus        73 a~~~~~~~~~~~~~----~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~  148 (273)
                      +.+++.+-.|+...    -+..|.++..+|+-.....||....+-+-..-+..|....+|+-|.-||.+|..++..+.-+
T Consensus        36 a~~lEk~~~~Fs~~~s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d~L~  115 (368)
T COG5091          36 AACLEKLYFGFSDWHSDATMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDDTLP  115 (368)
T ss_pred             hhhHHHHHhhhhhhhcccChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcccch
Confidence            44555555555444    68899999999999999999999999999999999999999999999999999999888777


Q ss_pred             ccHHHHHHHHHHHHHHhc
Q 024043          149 TSANQCKQKVAQYAAELE  166 (273)
Q Consensus       149 ~~~~~~~~~~a~~~~~~g  166 (273)
                      .+..+.-..+-...-++.
T Consensus       116 ~We~rLet~L~~~~kkQ~  133 (368)
T COG5091         116 LWEDRLETKLNKKNKKQK  133 (368)
T ss_pred             HHHHHHHHHHhHhhHhhc
Confidence            666555555555555543

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.60  E-value=3.8  Score=38.96  Aligned_cols=99  Identities=13%  Similarity=0.233  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchh
Q 024043          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK  193 (273)
Q Consensus       114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~  193 (273)
                      .|+..+..+.. .+|.-++++|...+..+..+.....-+...+.++.||..+.+.++|.++++++-.-.+.++..    .
T Consensus       357 LWn~A~~~F~~-~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~----q  431 (872)
T KOG4814|consen  357 LWNTAKKLFKM-EKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLC----Q  431 (872)
T ss_pred             HHHhhHHHHHH-HHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHH----H
Confidence            34444555444 889999999999999888765544447888999999999999999999999985433333221    1


Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          194 GHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       194 ~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      -+.+   -+-+..|.-.+|..+.....
T Consensus       432 ~~~~---~~~~~E~~Se~AL~~~~~~~  455 (872)
T KOG4814|consen  432 LLML---QSFLAEDKSEEALTCLQKIK  455 (872)
T ss_pred             HHHH---HHHHHhcchHHHHHHHHHHH
Confidence            1112   22345677777777666543

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=90.53  E-value=0.92  Score=29.87  Aligned_cols=33  Identities=15%  Similarity=0.169  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (273)
Q Consensus       112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~  144 (273)
                      |..+.+.|.-....|++++|+.+|.+|++.+..
T Consensus         5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~   37 (69)
T PF04212_consen    5 AIELIKKAVEADEAGNYEEALELYKEAIEYLMQ   37 (69)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            344555566667778888888888888888754

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.44  E-value=0.13  Score=44.77  Aligned_cols=120  Identities=16%  Similarity=0.103  Sum_probs=80.9

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 024043           42 SFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAE  120 (273)
Q Consensus        42 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~  120 (273)
                      -+...|.++.|++.|..++++.      ...+..|..-+.++.++ .+..|+.-|..|+++-.+.-      .-+.--|.
T Consensus       123 eAln~G~~~~ai~~~t~ai~ln------p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa------~~ykfrg~  190 (377)
T KOG1308|consen  123 EALNDGEFDTAIELFTSAIELN------PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSA------KGYKFRGY  190 (377)
T ss_pred             HHhcCcchhhhhcccccccccC------CchhhhcccccceeeeccCCchhhhhhhhhhccCcccc------cccchhhH
Confidence            3445677888888888888774      34566788888888888 89999999999988865442      24555566


Q ss_pred             HHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHH
Q 024043          121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIE  173 (273)
Q Consensus       121 ~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~  173 (273)
                      ....+|+.++|...+..|+.+--..........+.-+.+.+-...++|+++.+
T Consensus       191 A~rllg~~e~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~~~  243 (377)
T KOG1308|consen  191 AERLLGNWEEAAHDLALACKLDYDEANSATLKEVFPNAGKIEEHRRKYERARE  243 (377)
T ss_pred             HHHHhhchHHHHHHHHHHHhccccHHHHHHHHHhccchhhhhhchhHHHHHHH
Confidence            66777889999999988887643322223333444444445445555555554

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.27  E-value=6.3  Score=33.68  Aligned_cols=57  Identities=11%  Similarity=0.208  Sum_probs=48.6

Q ss_pred             CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 024043           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE  145 (273)
Q Consensus        87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~  145 (273)
                      .|++|+..|++.+++-.+.|.+.  -+++..+-.+...+|+|++-++.|.+-+......
T Consensus        42 ~p~~Al~sF~kVlelEgEKgeWG--FKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA   98 (440)
T KOG1464|consen   42 EPKEALSSFQKVLELEGEKGEWG--FKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA   98 (440)
T ss_pred             CHHHHHHHHHHHHhcccccchhH--HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence            89999999999999887766643  4578888889999999999999999999887653

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=89.92  E-value=0.45  Score=24.74  Aligned_cols=22  Identities=5%  Similarity=0.015  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHH
Q 024043          155 KQKVAQYAAELEQYHKSIEIYE  176 (273)
Q Consensus       155 ~~~~a~~~~~~g~y~~A~~~~~  176 (273)
                      ...+|.++..+|++++|...++
T Consensus         4 ~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    4 RLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHh
Confidence            4455566666666666655543

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=89.86  E-value=6.1  Score=28.80  Aligned_cols=91  Identities=16%  Similarity=0.109  Sum_probs=50.5

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-----CHH-------HHHHHHHHHHHHHHhcCChh
Q 024043           42 SFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-----SSN-------EAISCLEQAVNMFCDIGRLS  109 (273)
Q Consensus        42 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-----~~~-------eA~~~~~~Al~~~~~~g~~~  109 (273)
                      -+...|++-+|++..+.....+.+..+.   .-.+..-|.++.+.     +|+       -+++||.++..+.+.     
T Consensus         5 ~~~~rGnhiKAL~iied~i~~h~~~~~~---~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~-----   76 (111)
T PF04781_consen    5 DYFARGNHIKALEIIEDLISRHGEDESS---WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPD-----   76 (111)
T ss_pred             HHHHccCHHHHHHHHHHHHHHccCCCch---HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChh-----
Confidence            3445677777777777666555433321   13333344444322     443       355555555554433     


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043          110 MAARYYKEIAELYESEHNIEQTIVFFEKAADM  141 (273)
Q Consensus       110 ~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~  141 (273)
                       .|..+..+|.-+...-.|++++.-.++++.+
T Consensus        77 -~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   77 -SAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             -HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence             3778888877766655566666666666544

>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=89.84  E-value=6.8  Score=34.14  Aligned_cols=106  Identities=12%  Similarity=0.147  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCC
Q 024043           31 DAADLFDKAANSFKLAKSWDKAGATYVKLANCH--LKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR  107 (273)
Q Consensus        31 ~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~  107 (273)
                      ..+.+-.+.+.+|..-++|..|...+.-. ...  .+..+.......+..++.+|.+. +..+|..+-.++.-+.....+
T Consensus       101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~N  179 (399)
T KOG1497|consen  101 QVASIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSN  179 (399)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccC
Confidence            44445556677777777777776654321 111  12223344555667778888777 678888887777666655555


Q ss_pred             hhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 024043          108 LSMAARYYKEIAELYESEHNIEQTIVFFEK  137 (273)
Q Consensus       108 ~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~  137 (273)
                      .......-.--|.++...+++-+|.++|.+
T Consensus       180 e~Lqie~kvc~ARvlD~krkFlEAAqrYye  209 (399)
T KOG1497|consen  180 EQLQIEYKVCYARVLDYKRKFLEAAQRYYE  209 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555544444445555555666666666654

>PRK10941 hypothetical protein; Provisional

Probab=89.75  E-value=2.5  Score=36.08  Aligned_cols=80  Identities=9%  Similarity=0.054  Sum_probs=67.1

Q ss_pred             HHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 024043          101 MFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR  180 (273)
Q Consensus       101 ~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~  180 (273)
                      .+....+..-..+.+.++-.+|...++++.|+.+.+..+.+...+-      .-+...|.+|.++|.+..|+.-++..+.
T Consensus       170 ~L~~a~~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp------~e~RDRGll~~qL~c~~~A~~DL~~fl~  243 (269)
T PRK10941        170 DLDEADNIEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDP------YEIRDRGLIYAQLDCEHVALSDLSYFVE  243 (269)
T ss_pred             HcCCCCHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            3444556667788999999999999999999999999999876442      3366789999999999999999999988


Q ss_pred             HHhccc
Q 024043          181 QSLNNN  186 (273)
Q Consensus       181 ~~~~~~  186 (273)
                      .+++++
T Consensus       244 ~~P~dp  249 (269)
T PRK10941        244 QCPEDP  249 (269)
T ss_pred             hCCCch
Confidence            887775

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=89.66  E-value=0.49  Score=24.59  Aligned_cols=24  Identities=8%  Similarity=0.084  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHH
Q 024043          113 RYYKEIAELYESEHNIEQTIVFFE  136 (273)
Q Consensus       113 ~~l~~lg~~~~~~g~~~~A~~~y~  136 (273)
                      .+...+|.++...|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            466788999999999999988775

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=89.64  E-value=1.2  Score=44.71  Aligned_cols=92  Identities=13%  Similarity=-0.015  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHhcCChh----HHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHH
Q 024043           91 AISCLEQAVNMFCDIGRLS----MAARYYKEIAELYESE----HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYA  162 (273)
Q Consensus        91 A~~~~~~Al~~~~~~g~~~----~~a~~l~~lg~~~~~~----g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~  162 (273)
                      |-..|.+|+..|++.+...    .--.+...+|..+...    |+.    +-|.+|+.-|+.......+.--|..-|.+|
T Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  562 (932)
T PRK13184        487 AEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDP----RDFTQALSEFSYLHGGVGAPLEYLGKALVY  562 (932)
T ss_pred             hhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCCh----HHHHHHHHHHHHhcCCCCCchHHHhHHHHH
Confidence            4445555555555543311    1123455556555443    333    678888888888776666666677788888


Q ss_pred             HHhcCHHHHHHHHHHHHHHHhccc
Q 024043          163 AELEQYHKSIEIYEEIARQSLNNN  186 (273)
Q Consensus       163 ~~~g~y~~A~~~~~~~~~~~~~~~  186 (273)
                      .++|+|++=+++|.-++.+..+.|
T Consensus       563 ~~~~~~~~~~~~~~~~~~~~~~~~  586 (932)
T PRK13184        563 QRLGEYNEEIKSLLLALKRYSQHP  586 (932)
T ss_pred             HHhhhHHHHHHHHHHHHHhcCCCC
Confidence            999999999998888876655554

>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules

Probab=89.58  E-value=23  Score=35.06  Aligned_cols=120  Identities=15%  Similarity=0.024  Sum_probs=82.6

Q ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhcc-C-HHHHHH-HHHHHHHHHH
Q 024043           28 KYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHL-KLESKHEAAQAYVDAAHCYKKT-S-SNEAIS-CLEQAVNMFC  103 (273)
Q Consensus        28 ~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~aa~~~~~~~~~~~~~-~-~~eA~~-~~~~Al~~~~  103 (273)
                      ..+.|..+|-++|.+-...+--+-|-++|.+|..+|+ ...+...+-.+...+.....+. . .++-.+ .-.++.....
T Consensus       587 ~~~lalkL~Lq~A~~AD~~~~e~iaYEFf~QAf~iYEE~IsDSk~Q~~aL~~ii~tL~~~r~~~~Enyd~L~tk~t~yas  666 (762)
T PF03635_consen  587 SSELALKLYLQAAIVADQCGLEEIAYEFFSQAFTIYEEEISDSKAQFQALTLIIGTLQKTRSFSEENYDTLITKCTLYAS  666 (762)
T ss_dssp             --HHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHCC-----HHHHHHHHHHHHHHHH
T ss_pred             chhhhHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH
Confidence            4688999999999888888866678899999999998 6778888888887777777655 1 222222 3334444445


Q ss_pred             hcCChhHHHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHHHhccCC
Q 024043          104 DIGRLSMAARYYKEIAELYESEH----------NIEQTIVFFEKAADMFQNEEV  147 (273)
Q Consensus       104 ~~g~~~~~a~~l~~lg~~~~~~g----------~~~~A~~~y~~Al~~~~~~~~  147 (273)
                      +.=+...++++....+.+++...          +....++|++||+.+....-+
T Consensus       667 KLLKK~DQCRaV~~CSHLfW~~~~~~~~~~~~rd~krVlECLQKaLriAds~md  720 (762)
T PF03635_consen  667 KLLKKPDQCRAVYLCSHLFWSTEISEETGSFYRDGKRVLECLQKALRIADSCMD  720 (762)
T ss_dssp             C-SSHHHHHHHHHHCHHHHHT-B-TTTTT-B---HHHHHHHHHHHHHHHHCSSS
T ss_pred             HhcCcHHHHHHHHHHHHHHhCCCCCccccccccChHHHHHHHHHHHHHHHHHhC
Confidence            55566677888888888888753          678899999999999877654

Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.47  E-value=26  Score=35.57  Aligned_cols=25  Identities=16%  Similarity=0.190  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHH
Q 024043          154 CKQKVAQYAAELEQYHKSIEIYEEI  178 (273)
Q Consensus       154 ~~~~~a~~~~~~g~y~~A~~~~~~~  178 (273)
                      .+.+++..+..+|+|..|+..-+++
T Consensus      1222 N~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1222 NFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            4566777777778887777655554

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.45  E-value=1.2  Score=29.97  Aligned_cols=35  Identities=31%  Similarity=0.315  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 024043          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE  145 (273)
Q Consensus       111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~  145 (273)
                      .|..+...|.-+...|++.+|+.+|++|++++.+.
T Consensus         5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~   39 (75)
T cd02682           5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQI   39 (75)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            34555666677777799999999999998887654

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=89.40  E-value=9.6  Score=34.55  Aligned_cols=114  Identities=13%  Similarity=0.056  Sum_probs=75.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc---CC-----HH----HHHHHHHHHHHHHhcc-CHHHHHH
Q 024043           27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKL---ES-----KH----EAAQAYVDAAHCYKKT-SSNEAIS   93 (273)
Q Consensus        27 ~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~-----~~----~aa~~~~~~~~~~~~~-~~~eA~~   93 (273)
                      |..|+=.+.--+=+..+..++.|..|+--|..|+++..+-   +.     ..    -+...-..+..||.+. +|+-|+.
T Consensus       170 PqiDkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALn  249 (569)
T PF15015_consen  170 PQIDKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALN  249 (569)
T ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHH
Confidence            6666655444444445555677888877787777776532   11     11    2333456889999888 9999999


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q 024043           94 CLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE  146 (273)
Q Consensus        94 ~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~  146 (273)
                      +-.+++.+....=.      -...-|.++..+.+|.+|...+--|.=+|--.|
T Consensus       250 h~hrsI~lnP~~fr------nHLrqAavfR~LeRy~eAarSamia~ymywl~g  296 (569)
T PF15015_consen  250 HSHRSINLNPSYFR------NHLRQAAVFRRLERYSEAARSAMIADYMYWLSG  296 (569)
T ss_pred             HHhhhhhcCcchhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999876543211      122335566666889999888888888887665

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=88.56  E-value=13  Score=30.83  Aligned_cols=99  Identities=12%  Similarity=0.066  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC
Q 024043           69 KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV  147 (273)
Q Consensus        69 ~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~  147 (273)
                      +...|..+.+-|..|... -..-|.--|.+++.+.++.      +.+.+-+|..+...|+++.|.+.|...+++-..   
T Consensus        61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m------~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~---  131 (297)
T COG4785          61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDM------PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT---  131 (297)
T ss_pred             hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCc------HHHHHHHHHHHHhcccchHHHHHhhhHhccCCc---
Confidence            344444455555555444 4445555555555555443      335666666666666666666666655555321   


Q ss_pred             cccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043          148 TTSANQCKQKVAQYAAELEQYHKSIEIYEEIA  179 (273)
Q Consensus       148 ~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~  179 (273)
                         -.-+..+.|..+.--|+|+-|.+-+.+.-
T Consensus       132 ---y~Ya~lNRgi~~YY~gR~~LAq~d~~~fY  160 (297)
T COG4785         132 ---YNYAHLNRGIALYYGGRYKLAQDDLLAFY  160 (297)
T ss_pred             ---chHHHhccceeeeecCchHhhHHHHHHHH
Confidence               12334455555555566666665555443

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.52  E-value=1.3  Score=30.06  Aligned_cols=33  Identities=15%  Similarity=0.288  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (273)
Q Consensus       112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~  144 (273)
                      |.-+..-|.-....|+|++|+.+|.+|++.+..
T Consensus         6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~   38 (77)
T cd02683           6 AKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQ   38 (77)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            334444455566668899999999988888764

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=88.17  E-value=1.8  Score=29.10  Aligned_cols=33  Identities=15%  Similarity=0.208  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (273)
Q Consensus       112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~  144 (273)
                      |..+..-|.-....|++++|+.+|.+|++.+..
T Consensus         8 A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~   40 (77)
T smart00745        8 AKELISKALKADEAGDYEEALELYKKAIEYLLE   40 (77)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            334445556666678999999999999888765

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.71  E-value=27  Score=33.53  Aligned_cols=99  Identities=13%  Similarity=0.086  Sum_probs=67.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 024043           39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKE  117 (273)
Q Consensus        39 a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~  117 (273)
                      |...|+ ..+|..+++.|...+.-+..-.....-+.....+.-||... +.+.|++++++|-+.-++.-      -+...
T Consensus       361 A~~~F~-~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~------l~q~~  433 (872)
T KOG4814|consen  361 AKKLFK-MEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSP------LCQLL  433 (872)
T ss_pred             hHHHHH-HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccH------HHHHH
Confidence            344444 45789999999998887764443344488899999999888 99999999999876543221      12233


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043          118 IAELYESEHNIEQTIVFFEKAADMFQN  144 (273)
Q Consensus       118 lg~~~~~~g~~~~A~~~y~~Al~~~~~  144 (273)
                      +-.+....|.-++|+.+..+....+.+
T Consensus       434 ~~~~~~~E~~Se~AL~~~~~~~s~~~~  460 (872)
T KOG4814|consen  434 MLQSFLAEDKSEEALTCLQKIKSSEDE  460 (872)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence            334444458888999888876665543

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=87.67  E-value=2  Score=34.84  Aligned_cols=60  Identities=22%  Similarity=0.303  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHH
Q 024043           72 AAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIV  133 (273)
Q Consensus        72 aa~~~~~~~~~~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~  133 (273)
                      .+.....+|..|.+.|+++++..+-++++++....++.  ...+..|+.++..+|++++|--
T Consensus       140 t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n--~eil~sLas~~~~~~~~e~AYi  199 (203)
T PF11207_consen  140 TAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFN--PEILKSLASIYQKLKNYEQAYI  199 (203)
T ss_pred             CHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCC--HHHHHHHHHHHHHhcchhhhhh
Confidence            35667788888988899999999999999998765555  5589999999999999998854

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.49  E-value=4.4  Score=27.33  Aligned_cols=28  Identities=21%  Similarity=0.342  Sum_probs=22.0

Q ss_pred             HHhcCCHHHHHHHHHHHHHHHhccCCcc
Q 024043          122 YESEHNIEQTIVFFEKAADMFQNEEVTT  149 (273)
Q Consensus       122 ~~~~g~~~~A~~~y~~Al~~~~~~~~~~  149 (273)
                      -...|+|++|+++|..|++.|-...++.
T Consensus        16 eD~~gny~eA~~lY~~ale~~~~ekn~~   43 (75)
T cd02680          16 EDEKGNAEEAIELYTEAVELCINTSNET   43 (75)
T ss_pred             hhHhhhHHHHHHHHHHHHHHHHHhcChh
Confidence            3344999999999999999998754443

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.43  E-value=2.1  Score=28.79  Aligned_cols=31  Identities=16%  Similarity=0.230  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (273)
Q Consensus       114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~  144 (273)
                      .+..-|.-....|+|++|+.+|.+|++.+..
T Consensus         8 ~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~   38 (75)
T cd02678           8 ELVKKAIEEDNAGNYEEALRLYQHALEYFMH   38 (75)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            3444455556668899999999988888754

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=87.40  E-value=17  Score=31.00  Aligned_cols=131  Identities=15%  Similarity=0.112  Sum_probs=82.4

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHH-hcc-CHHHHHHHHHHHHHHHHh---cCC-----hhHH
Q 024043           45 LAKSWDKAGATYVKLANCHLKLES---KHEAAQAYVDAAHCY-KKT-SSNEAISCLEQAVNMFCD---IGR-----LSMA  111 (273)
Q Consensus        45 ~~~~~~~A~~~~~~a~~~~~~~~~---~~~aa~~~~~~~~~~-~~~-~~~eA~~~~~~Al~~~~~---~g~-----~~~~  111 (273)
                      ..|+++.|..++.|+-.... ..+   ....+..+.+.|... .+. ++++|+.++++|.++...   .+.     ....
T Consensus         5 ~~~~~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    5 KQGDLDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhCCHHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            45777777777777776653 222   345566777777765 455 899999999999999744   211     2456


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-CCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 024043          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR  180 (273)
Q Consensus       112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~-~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~  180 (273)
                      ..++..++.+|...+.++-. .-..++++..+.. +++...  .+.++- +..+.++.+.+.+.+.+.+.
T Consensus        84 ~~iL~~La~~~l~~~~~~~~-~ka~~~l~~l~~e~~~~~~~--~~L~l~-il~~~~~~~~~~~~L~~mi~  149 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESV-EKALNALRLLESEYGNKPEV--FLLKLE-ILLKSFDEEEYEEILMRMIR  149 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHH-HHHHHHHHHHHHhCCCCcHH--HHHHHH-HHhccCChhHHHHHHHHHHH
Confidence            78999999999987776533 2244455555433 332221  112222 22336778888887777753

It is also involved in sporulation [].

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=87.11  E-value=19  Score=31.13  Aligned_cols=131  Identities=10%  Similarity=0.038  Sum_probs=84.5

Q ss_pred             cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh
Q 024043           46 AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES  124 (273)
Q Consensus        46 ~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~  124 (273)
                      .+..++-++-+.+.++-.+..+-....+.+..++|..|... |.+.+.+.+++.+.-....|-.-..--+...+|.+|..
T Consensus        88 ~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d  167 (412)
T COG5187          88 LKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGD  167 (412)
T ss_pred             HHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhcc
Confidence            33455666666555555444444567788999999999887 99999999998888777777666666677778887754


Q ss_pred             cCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043          125 EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA  179 (273)
Q Consensus       125 ~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~  179 (273)
                         -.=.-+..+.+-.+++..|+-...+..-.-.|.......++.+|..++..++
T Consensus       168 ---~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l  219 (412)
T COG5187         168 ---RKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDIL  219 (412)
T ss_pred             ---HHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence               3333445556667777776522222222223333334457777777766665

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=87.03  E-value=2.1  Score=42.96  Aligned_cols=99  Identities=16%  Similarity=0.135  Sum_probs=72.3

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-----CHHHHHHHHHHHHHHHHhcCChhHHHHHH
Q 024043           41 NSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-----SSNEAISCLEQAVNMFCDIGRLSMAARYY  115 (273)
Q Consensus        41 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-----~~~eA~~~~~~Al~~~~~~g~~~~~a~~l  115 (273)
                      +.|-..+.|+.|+..|.+...-+.   .+.+--.+...+|....+.     ++    +-|.+|+.-|....+..++.--|
T Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  555 (932)
T PRK13184        483 DAFLAEKLYDQALIFYRRIRESFP---GRKEGYEAQFRLGITLLEKASEQGDP----RDFTQALSEFSYLHGGVGAPLEY  555 (932)
T ss_pred             HHHHhhHHHHHHHHHHHHHhhcCC---CcccchHHHHHhhHHHHHHHHhcCCh----HHHHHHHHHHHHhcCCCCCchHH
Confidence            455566667777777777665552   1122223555666665443     33    77888999998888888888889


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q 024043          116 KEIAELYESEHNIEQTIVFFEKAADMFQNEE  146 (273)
Q Consensus       116 ~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~  146 (273)
                      ..-|.+|..+|+|++=+++|.-|+.-|.+..
T Consensus       556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  586 (932)
T PRK13184        556 LGKALVYQRLGEYNEEIKSLLLALKRYSQHP  586 (932)
T ss_pred             HhHHHHHHHhhhHHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999999999999887643

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.02  E-value=2  Score=29.34  Aligned_cols=36  Identities=14%  Similarity=0.002  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 024043          110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE  145 (273)
Q Consensus       110 ~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~  145 (273)
                      ..|....+.|..+.+.|+.++|+.+|++++.+..+.
T Consensus         6 ~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg   41 (79)
T cd02679           6 KQAFEEISKALRADEWGDKEQALAHYRKGLRELEEG   41 (79)
T ss_pred             HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHH
Confidence            344556666777788899999999999999887754

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.56  E-value=2  Score=28.96  Aligned_cols=30  Identities=20%  Similarity=0.310  Sum_probs=21.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043          115 YKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (273)
Q Consensus       115 l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~  144 (273)
                      +...|.-....|+|++|..+|..+++.+..
T Consensus         9 l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~   38 (75)
T cd02677           9 LIRLALEKEEEGDYEAAFEFYRAGVDLLLK   38 (75)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            333344444458899999999998888864

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=86.56  E-value=22  Score=31.25  Aligned_cols=130  Identities=12%  Similarity=0.137  Sum_probs=89.6

Q ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcC
Q 024043           48 SWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH  126 (273)
Q Consensus        48 ~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g  126 (273)
                      ..++-++-+.+..+-.+++--..+...+..+.+..|.+. |-+.|.+.+++..+--...|..-..--+...+|..|.   
T Consensus        79 ~neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~---  155 (393)
T KOG0687|consen   79 ANEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYL---  155 (393)
T ss_pred             hhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhc---
Confidence            344555556666655554433566778888889888777 9999999999988877778877777777888888874   


Q ss_pred             CHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 024043          127 NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR  180 (273)
Q Consensus       127 ~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~  180 (273)
                      +.+---+..++|-.++++.|+=...+..-.--|.......++.+|..+|..++.
T Consensus       156 D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vs  209 (393)
T KOG0687|consen  156 DHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVS  209 (393)
T ss_pred             cHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence            466666777888888888876322222222333333445678888887777653

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=86.18  E-value=27  Score=32.22  Aligned_cols=18  Identities=11%  Similarity=-0.160  Sum_probs=9.7

Q ss_pred             HHHHHHHHHcCCHHHHHH
Q 024043           37 DKAANSFKLAKSWDKAGA   54 (273)
Q Consensus        37 ~~a~~~~~~~~~~~~A~~   54 (273)
                      ......+...|-++.|+.
T Consensus       299 ~~i~~fL~~~G~~e~AL~  316 (443)
T PF04053_consen  299 QSIARFLEKKGYPELALQ  316 (443)
T ss_dssp             HHHHHHHHHTT-HHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHh
Confidence            344555666666666555

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway

Probab=85.73  E-value=20  Score=37.48  Aligned_cols=54  Identities=11%  Similarity=-0.001  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 024043           70 HEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYE  123 (273)
Q Consensus        70 ~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~  123 (273)
                      ...++..-.+|+.|... ++.+|+.+|..|+++.+..+|.--.|.++..++.+..
T Consensus       239 r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~  293 (1185)
T PF08626_consen  239 RCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLL  293 (1185)
T ss_pred             hhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHH
Confidence            35666777788888766 9999999999999999999999999999988876553

To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].

>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.29  E-value=3  Score=27.91  Aligned_cols=31  Identities=16%  Similarity=0.223  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (273)
Q Consensus       114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~  144 (273)
                      .+..-|.-....|++++|+.+|..|++.+..
T Consensus         8 ~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~   38 (75)
T cd02656           8 ELIKQAVKEDEDGNYEEALELYKEALDYLLQ   38 (75)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            3444555566668888888888888888764

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=85.28  E-value=1.4  Score=38.09  Aligned_cols=70  Identities=19%  Similarity=0.162  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043           69 KHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (273)
Q Consensus        69 ~~~aa~~~~~~~~~~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~  144 (273)
                      ..++..++..++..++.+..++|...|+.|+.+....-+      ++..+|...+...+.-+|-+||-+|+.+...
T Consensus       113 ~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~------~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~  182 (472)
T KOG3824|consen  113 VKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQ------ILIEMGQFREMHNEIVEADQCYVKALTISPG  182 (472)
T ss_pred             hHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHH------HHHHHhHHHHhhhhhHhhhhhhheeeeeCCC
Confidence            456667778888888888889999999999988766544      8899999999888899999999999988654

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=85.17  E-value=10  Score=28.29  Aligned_cols=56  Identities=13%  Similarity=0.236  Sum_probs=27.9

Q ss_pred             CHHHHHHHHHHHHHHHHhcCChhH---------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 024043           87 SSNEAISCLEQAVNMFCDIGRLSM---------AARYYKEIAELYESEHNIEQTIVFFEKAADMF  142 (273)
Q Consensus        87 ~~~eA~~~~~~Al~~~~~~g~~~~---------~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~  142 (273)
                      ++-.++-+|++|+.+..+.+....         -.....|+|..++..|+.+=.+.|++-|.+..
T Consensus        16 ~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~V   80 (140)
T PF10952_consen   16 DPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKV   80 (140)
T ss_pred             cHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHH
Confidence            555666666666655554421111         01123455555555555555555555554443

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=85.06  E-value=1.9  Score=36.56  Aligned_cols=43  Identities=14%  Similarity=0.258  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043           91 AISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAA  139 (273)
Q Consensus        91 A~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al  139 (273)
                      |..+|.+|+.+.+..|+      .++.+|.+....|+.=.|+=+|-+++
T Consensus         1 A~~~Y~~A~~l~P~~G~------p~nQLAvl~~~~~~~l~avy~y~Rsl   43 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGN------PYNQLAVLASYQGDDLDAVYYYIRSL   43 (278)
T ss_dssp             HHHHHHHHHHH-TTBSH------HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCC------cccchhhhhccccchHHHHHHHHHHH
Confidence            45566666666666654      55566666666566666665555555

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=84.89  E-value=18  Score=32.45  Aligned_cols=142  Identities=13%  Similarity=0.093  Sum_probs=78.7

Q ss_pred             CCHHHHHHHHHHHH------------------HHHHH---cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 024043           27 SKYEDAADLFDKAA------------------NSFKL---AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK   85 (273)
Q Consensus        27 ~~~~~A~~~~~~a~------------------~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~   85 (273)
                      .||+.=+.+.+..-                  -++..   .|+.++|.+.+..++.-.     .......+--+|.+|+.
T Consensus       155 qdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~-----~~~~~d~~gL~GRIyKD  229 (374)
T PF13281_consen  155 QDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD-----ENPDPDTLGLLGRIYKD  229 (374)
T ss_pred             hhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc-----CCCChHHHHHHHHHHHH
Confidence            57777777766542                  23333   788888888887764332     11234577778888876


Q ss_pred             c----------CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HHHhccCCcccH
Q 024043           86 T----------SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAA----DMFQNEEVTTSA  151 (273)
Q Consensus        86 ~----------~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al----~~~~~~~~~~~~  151 (273)
                      .          ..++|+.+|+++.++-...       -.-.|++.++...|...+...-.++-.    .+.-..+.....
T Consensus       230 ~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-------Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~  302 (374)
T PF13281_consen  230 LFLESNFTDRESLDKAIEWYRKGFEIEPDY-------YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM  302 (374)
T ss_pred             HHHHcCccchHHHHHHHHHHHHHHcCCccc-------cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence            5          2467777777776654211       122344555555554333332222222    222222322222


Q ss_pred             HHHH--HHHHHHHHHhcCHHHHHHHHHHHHH
Q 024043          152 NQCK--QKVAQYAAELEQYHKSIEIYEEIAR  180 (273)
Q Consensus       152 ~~~~--~~~a~~~~~~g~y~~A~~~~~~~~~  180 (273)
                      ...|  -.++.+.+-.|++++|+..++++..
T Consensus       303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~  333 (374)
T PF13281_consen  303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFK  333 (374)
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence            2222  3344566778999999999999863

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=84.31  E-value=9.5  Score=33.20  Aligned_cols=62  Identities=15%  Similarity=0.188  Sum_probs=49.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          117 EIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       117 ~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                      ..+..+ ..|+.++|...|+.|+.+....      .+++..+|.+.....+.-+|-.+|-+++...+++
T Consensus       122 ~A~~~~-~~Gk~ekA~~lfeHAlalaP~~------p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~n  183 (472)
T KOG3824|consen  122 AAGRSR-KDGKLEKAMTLFEHALALAPTN------PQILIEMGQFREMHNEIVEADQCYVKALTISPGN  183 (472)
T ss_pred             HHHHHH-hccchHHHHHHHHHHHhcCCCC------HHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCc
Confidence            333433 3499999999999999997533      4789999999888889999999999998766665

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=84.15  E-value=7.6  Score=38.28  Aligned_cols=57  Identities=12%  Similarity=0.139  Sum_probs=27.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 024043          119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ  181 (273)
Q Consensus       119 g~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~  181 (273)
                      |.++.++|++++|..+.+ |++.-...     --.++.-+-.||..+|++++|..+|+++...
T Consensus        50 aLsl~r~gk~~ea~~~Le-~~~~~~~~-----D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~  106 (932)
T KOG2053|consen   50 ALSLFRLGKGDEALKLLE-ALYGLKGT-----DDLTLQFLQNVYRDLGKLDEAVHLYERANQK  106 (932)
T ss_pred             HHHHHHhcCchhHHHHHh-hhccCCCC-----chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence            334445566666664332 22221111     1234445555666666666666666666543

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=84.00  E-value=28  Score=30.30  Aligned_cols=110  Identities=19%  Similarity=0.233  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HHhcc---
Q 024043           71 EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAAD-MFQNE---  145 (273)
Q Consensus        71 ~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~-~~~~~---  145 (273)
                      ..+.++...+.+.++. .++.|..++.++.......+..  ...+...-+.++...|+..+|+...+..+. .....   
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~--~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~  221 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL--LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS  221 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC--CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence            4444445555555444 5555555555544333211111  223444445666677899999999988887 33322   


Q ss_pred             ------------------------CCcccHHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHHH
Q 024043          146 ------------------------EVTTSANQCKQKVAQYAAEL------EQYHKSIEIYEEIARQS  182 (273)
Q Consensus       146 ------------------------~~~~~~~~~~~~~a~~~~~~------g~y~~A~~~~~~~~~~~  182 (273)
                                              ......+.++..+|.....+      +.+++++..|.++....
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~  288 (352)
T PF02259_consen  222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLD  288 (352)
T ss_pred             ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhC
Confidence                                    11234457777777777777      78888888998886443

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=83.90  E-value=29  Score=30.40  Aligned_cols=74  Identities=12%  Similarity=0.158  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                      ...+.++|.+|.+.++..+|..+-.+|.=+.....++......-.-.|.++-..+++-+|...|-+...+...+
T Consensus       144 l~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~~ki~~  217 (399)
T KOG1497|consen  144 LLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQRKIVD  217 (399)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            33456888999998999999999888876655554443333334445566667788888888877776554444

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.43  E-value=21  Score=28.50  Aligned_cols=98  Identities=12%  Similarity=0.153  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcc-cHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhc
Q 024043          113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT-SANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG  191 (273)
Q Consensus       113 ~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~-~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~  191 (273)
                      -+...+|.+..+.|+-..|+.+|.++..--   ..|. ....+..+.+.++...|.|+.-....+-..   ...+..+++
T Consensus        95 LA~mr~at~~a~kgdta~AV~aFdeia~dt---~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa---~d~n~mR~s  168 (221)
T COG4649          95 LARMRAATLLAQKGDTAAAVAAFDEIAADT---SIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLA---GDGNPMRHS  168 (221)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHHHhccC---CCcchhhHHHHHHHHHHHhccccHHHHHHHhhhcc---CCCChhHHH
Confidence            356778888888899999999998765432   2221 223456777888889999988776655442   112234555


Q ss_pred             hhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043          192 VKGHLLNAGICQLCKGDVVAITNALERY  219 (273)
Q Consensus       192 ~~~~~~~~gl~~l~~gd~~~A~~~~~~~  219 (273)
                      .++.   +|+.-+..||+..|+.-|...
T Consensus       169 ArEA---LglAa~kagd~a~A~~~F~qi  193 (221)
T COG4649         169 AREA---LGLAAYKAGDFAKAKSWFVQI  193 (221)
T ss_pred             HHHH---HhHHHHhccchHHHHHHHHHH
Confidence            6654   478888999999999888774

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=83.02  E-value=35  Score=30.71  Aligned_cols=58  Identities=22%  Similarity=0.257  Sum_probs=39.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHH
Q 024043           40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT---SSNEAISCLEQAVNM  101 (273)
Q Consensus        40 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~---~~~eA~~~~~~Al~~  101 (273)
                      +.-+...++|..|...+.....-   +..... ...+..+..+|...   ++.+|.++++..+..
T Consensus       138 a~~l~n~~~y~aA~~~l~~l~~r---l~~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  138 AKELFNRYDYGAAARILEELLRR---LPGREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHh---CCchhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            34444678888888888876643   332222 56677777777665   889999998876654

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=82.61  E-value=13  Score=25.36  Aligned_cols=64  Identities=11%  Similarity=0.071  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043          113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA  179 (273)
Q Consensus       113 ~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~  179 (273)
                      +-...-|.-+....+..+|+....+|++.....   .....++.-+..+|...|+|.+.+++--+-+
T Consensus         7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~---~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~   70 (80)
T PF10579_consen    7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDR---EDRFRVLGYLIQAHMEWGKYREMLAFALQQL   70 (80)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhhcCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444455688999999999999887653   3445677778889999999999998765543

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.56  E-value=4.3  Score=27.33  Aligned_cols=28  Identities=11%  Similarity=0.106  Sum_probs=20.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043          117 EIAELYESEHNIEQTIVFFEKAADMFQN  144 (273)
Q Consensus       117 ~lg~~~~~~g~~~~A~~~y~~Al~~~~~  144 (273)
                      .-|.-....|+|++|+.+|..|++.+..
T Consensus        11 ~~Av~~D~~g~y~eA~~lY~~ale~~~~   38 (75)
T cd02684          11 VQAVKKDQRGDAAAALSLYCSALQYFVP   38 (75)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            3344455558899999999988888764

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=82.34  E-value=35  Score=30.18  Aligned_cols=27  Identities=19%  Similarity=0.386  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043          153 QCKQKVAQYAAELEQYHKSIEIYEEIA  179 (273)
Q Consensus       153 ~~~~~~a~~~~~~g~y~~A~~~~~~~~  179 (273)
                      .+-.+++.|-.++|+..+|++.++...
T Consensus       276 YIKRRLAMCARklGrlrEA~K~~RDL~  302 (556)
T KOG3807|consen  276 YIKRRLAMCARKLGRLREAVKIMRDLM  302 (556)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence            445778888889999999999988774

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=81.84  E-value=4.7  Score=34.06  Aligned_cols=43  Identities=12%  Similarity=0.121  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043          131 TIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA  179 (273)
Q Consensus       131 A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~  179 (273)
                      |..+|.+|+.+.+..|      ..++++|.++...|+.-.|+-+|-|++
T Consensus         1 A~~~Y~~A~~l~P~~G------~p~nQLAvl~~~~~~~l~avy~y~Rsl   43 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNG------NPYNQLAVLASYQGDDLDAVYYYIRSL   43 (278)
T ss_dssp             HHHHHHHHHHH-TTBS------HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCC------CcccchhhhhccccchHHHHHHHHHHH
Confidence            6889999999999887      458899999999999999999998886

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.64  E-value=5.8  Score=26.73  Aligned_cols=37  Identities=16%  Similarity=0.056  Sum_probs=24.1

Q ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 024043           28 KYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLK   65 (273)
Q Consensus        28 ~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~   65 (273)
                      +.+.|+.+..+| .---..|+|++|++.|..|++.+..
T Consensus         2 ~l~kai~Lv~~A-~~eD~~gny~eA~~lY~~ale~~~~   38 (75)
T cd02680           2 DLERAHFLVTQA-FDEDEKGNAEEAIELYTEAVELCIN   38 (75)
T ss_pred             CHHHHHHHHHHH-HHhhHhhhHHHHHHHHHHHHHHHHH
Confidence            345666666654 4445567777777777777777754

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=81.54  E-value=8.6  Score=32.02  Aligned_cols=58  Identities=10%  Similarity=0.243  Sum_probs=48.0

Q ss_pred             HHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          122 YESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       122 ~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                      ..+.++.+.+.+.|.+|+++..+     + ...|.++|....+.|+.+.|...|++.+...+.+
T Consensus         5 ~~~~~D~~aaaely~qal~lap~-----w-~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           5 LAESGDAEAAAELYNQALELAPE-----W-AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             hcccCChHHHHHHHHHHhhcCch-----h-hhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            34459999999999999999753     3 3568899999999999999999999998665554

>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=81.48  E-value=42  Score=30.59  Aligned_cols=146  Identities=12%  Similarity=0.007  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHH
Q 024043           34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAA  112 (273)
Q Consensus        34 ~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a  112 (273)
                      ...--.+.+++..+..-.+.-....+.....+...+...+..-..++....-. .|++|+.....|+....-.|-...-|
T Consensus       314 sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~dra  393 (482)
T KOG4322|consen  314 SVLLTIAEARESGDTACLNLPLALMFEFKRSEYSLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRA  393 (482)
T ss_pred             HHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHhccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcc
Confidence            33334455666566666666666666666556665555555555555555444 88999999999998887777655554


Q ss_pred             HHHHHHHHHHH------hcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCH---HHHHHHHHHHH
Q 024043          113 RYYKEIAELYE------SEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQY---HKSIEIYEEIA  179 (273)
Q Consensus       113 ~~l~~lg~~~~------~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y---~~A~~~~~~~~  179 (273)
                      ++..-.+.|+.      ...+.+.+.++.++|..++...+-...+.++..-.+..|-..|+-   +++...|++..
T Consensus       394 ra~fvfanC~lA~a~s~~~e~ld~~~~~L~~A~~~f~kL~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~  469 (482)
T KOG4322|consen  394 RAIFVFANCTLAFALSCANESLDGFPRYLDLAQSIFYKLGCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAW  469 (482)
T ss_pred             eeEEEEEeeeecchhhhhhhhHHhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHH
Confidence            44332222221      226788899999999999998887666777777778888888764   56677777774

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=81.48  E-value=4.5  Score=25.21  Aligned_cols=32  Identities=6%  Similarity=-0.063  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 024043          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNE  145 (273)
Q Consensus       114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~  145 (273)
                      ++..+|..+..+|+|++|..+.+.++++-+..
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N   34 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDN   34 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence            67788999999999999999999999885543

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=81.16  E-value=16  Score=33.18  Aligned_cols=100  Identities=13%  Similarity=0.137  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHhc-----------CChhHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043           74 QAYVDAAHCYKKTSSNEAISCLEQAVNMFCDI-----------GRLSMA-ARYYKEIAELYESEHNIEQTIVFFEKAADM  141 (273)
Q Consensus        74 ~~~~~~~~~~~~~~~~eA~~~~~~Al~~~~~~-----------g~~~~~-a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~  141 (273)
                      .++..+..+|+...|..|.--|+-|+++..+.           ||.... .-+..++..||..+++++-|+.+-.+.+-+
T Consensus       178 vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l  257 (569)
T PF15015_consen  178 VALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL  257 (569)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc
Confidence            35667777777777777777777777776432           332322 345678999999999999999999988877


Q ss_pred             HhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043          142 FQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA  179 (273)
Q Consensus       142 ~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~  179 (273)
                      ....      ...+..-|.|+..+.+|.+|...+.-+.
T Consensus       258 nP~~------frnHLrqAavfR~LeRy~eAarSamia~  289 (569)
T PF15015_consen  258 NPSY------FRNHLRQAAVFRRLERYSEAARSAMIAD  289 (569)
T ss_pred             Ccch------hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5422      2345566778888999999988766553

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=80.74  E-value=57  Score=31.58  Aligned_cols=17  Identities=12%  Similarity=0.354  Sum_probs=9.9

Q ss_pred             HHHHhcCHHHHHHHHHH
Q 024043          161 YAAELEQYHKSIEIYEE  177 (273)
Q Consensus       161 ~~~~~g~y~~A~~~~~~  177 (273)
                      ++++.+++++|..+-++
T Consensus       782 lHve~~~W~eAFalAe~  798 (1081)
T KOG1538|consen  782 LHVETQRWDEAFALAEK  798 (1081)
T ss_pred             heeecccchHhHhhhhh
Confidence            34555666666665544

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=80.41  E-value=7.8  Score=25.35  Aligned_cols=33  Identities=21%  Similarity=0.232  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 024043           31 DAADLFDKAANSFKLAKSWDKAGATYVKLANCHL   64 (273)
Q Consensus        31 ~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~   64 (273)
                      .|..+..+ |.-+-..|++++|+++|.++++.+.
T Consensus         4 ~A~~~~~~-Av~~D~~g~~~~A~~~Y~~ai~~l~   36 (69)
T PF04212_consen    4 KAIELIKK-AVEADEAGNYEEALELYKEAIEYLM   36 (69)
T ss_dssp             HHHHHHHH-HHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            44444444 4445557777777777777776654

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=80.08  E-value=3.6  Score=24.59  Aligned_cols=24  Identities=21%  Similarity=0.277  Sum_probs=22.2

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHH
Q 024043          156 QKVAQYAAELEQYHKSIEIYEEIA  179 (273)
Q Consensus       156 ~~~a~~~~~~g~y~~A~~~~~~~~  179 (273)
                      ..+|..|+.+|+++.|.+.+++++
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl   26 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVI   26 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHH
Confidence            578999999999999999999997

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	273
1qqe_A	292	Crystal Structure Of The Vesicular Transport Protei		1e-21
2ifu_A	307	Crystal Structure Of A Gamma-Snap From Danio Rerio		2e-04

>pdb|1QQE|A Chain A, Crystal Structure Of The Vesicular Transport Protein Sec17 Length = 292

Iteration: 1
 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 125/244 (51%), Gaps = 18/244 (7%)
Query: 28  KYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT- 86
           K+E+AADL  +AA  ++L K  + AG +++K A+   K  ++ EA   YV+A  C+K   
Sbjct: 32  KFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG 91
Query: 87  SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE-HNIEQTIVFFEKAADMFQNE 145
           +S  A+  LE A+ +F   G+    A +  E+ E+ E++ H+  + I  +E A + +  +
Sbjct: 92  NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD 151
Query: 146 EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC 205
           +    +N+C  K A   A   QY ++ +IY ++ + S+ N L ++ +K + L  G+CQL 
Sbjct: 152 QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA 211
Query: 206 KGDVVAITNALERYQ----------------DIAASMDEEDIAKFTDVVKEFDSMTPLDP 249
             D VA    L+  Q                 +  +++E D  + ++  KEFD+   LD 
Sbjct: 212 ATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271
Query: 250 WKTT 253
           WK T
Sbjct: 272 WKIT 275

>pdb|2IFU|A Chain A, Crystal Structure Of A Gamma-Snap From Danio Rerio Length = 307

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 96/228 (42%), Gaps = 29/228 (12%)
Query: 29  YEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK-TS 87
           Y+ AA  + KAA +FK AK  ++A   Y++ A  H    S   AA+A+  A    K    
Sbjct: 32  YDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGXXLKDLQR 91
Query: 88  SNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV 147
             EA+  +E+A   + + G    AA       +L E   ++ + +  +++AA +F+NEE 
Sbjct: 92  XPEAVQYIEKASVXYVENGTPDTAAXALDRAGKLXEP-LDLSKAVHLYQQAAAVFENEER 150
Query: 148 TTSANQC----------KQKVAQYAAELEQ---YHKSIEIYEEIARQSLNNNLLKYGVKG 194
              A +           +QK  + AA L++    +K  E Y    ++ +   L+      
Sbjct: 151 LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSXYKEXENYPTCYKKCIAQVLV------ 204
Query: 195 HLLNAGICQLCKGDVVAITNALERYQDIAASMDEEDIAKFTDVVKEFD 242
                   QL + D VA    +     I      ED A   D+++ +D
Sbjct: 205 --------QLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAYD 244

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	273
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	9e-73
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	7e-60
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	6e-04
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	3e-05
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	6e-04
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	4e-05
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	1e-04
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-04
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	7e-04

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score =  224 bits (571), Expect = 9e-73
 Identities = 84/294 (28%), Positives = 147/294 (50%), Gaps = 29/294 (9%)

Query: 5   IARAEEFEKKAEKKLNGWGLFGS--------KYEDAADLFDKAANSFKLAKSWDKAGATY 56
           I+   E  K+AEKK      F          K+E+AADL  +AA  ++L K  + AG ++
Sbjct: 1   ISDPVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSF 60

Query: 57  VKLANCHLKLESKHEAAQAYVDAAHCYKKTSS-NEAISCLEQAVNMFCDIGRLSMAARYY 115
           +K A+   K  ++ EA   YV+A  C+K   +   A+  LE A+ +F   G+    A + 
Sbjct: 61  LKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFK 120

Query: 116 KEIAELYESE-HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEI 174
            E+ E+ E++ H+  + I  +E A + +  ++    +N+C  K A   A   QY ++ +I
Sbjct: 121 FELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180

Query: 175 YEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY--------------- 219
           Y ++ + S+ N L ++ +K + L  G+CQL   D VA    L+                 
Sbjct: 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNF 240

Query: 220 -QDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKELEEDDL 272
            + +  +++E D  + ++  KEFD+   LD WK T+L ++KE ++    +EDDL
Sbjct: 241 LKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESIQQ---QEDDL 291

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score =  191 bits (486), Expect = 7e-60
 Identities = 60/274 (21%), Positives = 111/274 (40%), Gaps = 20/274 (7%)

Query: 3   DQIARAEEFEKKAEKKLN-GWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLAN 61
            +I+ A E   KAEK L   +  +   Y+ AA  + KAA +FK AK  ++A   Y++ A 
Sbjct: 5   QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAE 64

Query: 62  CHLKLESKHEAAQAYVDAAHCYKKTSS-NEAISCLEQAVNMFCDIGRLSMAARYYKEIAE 120
            H    S   AA+A+  A    K      EA+  +E+A  M+ + G    AA       +
Sbjct: 65  AHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124

Query: 121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180
           L E   ++ + +  +++AA +F+NEE    A +   K ++     +++ ++    ++  +
Sbjct: 125 LMEPL-DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQK-EK 182

Query: 181 QSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDI---------------AAS 225
                           +   + QL + D VA    +     I                 +
Sbjct: 183 SMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQA 242

Query: 226 MDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVK 259
            DE+D  +   V +    +T +D     L + +K
Sbjct: 243 YDEQDEEQLLRVCRS-PLVTYMDNDYAKLAISLK 275

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 20/170 (11%), Positives = 54/170 (31%), Gaps = 14/170 (8%)

Query: 28  KYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTS 87
           ++++AA   ++     +        G     L N +     KH   +         K+ +
Sbjct: 141 RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK-GKHLGQRNPGKFGDDVKE-A 198

Query: 88  SNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ---- 143
              A+   ++ + +  D+G      R    +   Y    + +  I   ++   + +    
Sbjct: 199 LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258

Query: 144 NEEVTTSANQ---CKQKVAQYAAELEQYHKSIEIYEEIAR-----QSLNN 185
                 + +        + Q+    E Y +++ +  E+       QS  +
Sbjct: 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYS 308

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 12/200 (6%), Positives = 47/200 (23%), Gaps = 41/200 (20%)

Query: 27  SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCH-----------LKLESKHEAAQA 75
           + ++  +     +     +       G       +C               E     +  
Sbjct: 29  NSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAI 88

Query: 76  YVDAAHCYKKTSS-NEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVF 134
           Y    + Y      N+A+   +  + +   +      A+    +    +     ++  + 
Sbjct: 89  YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAIC 148

Query: 135 FEKAADMFQ------------------------NEEVTTSANQCKQKVAQYAAELEQYHK 170
            E+   + +                        +                    +E Y +
Sbjct: 149 CERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208

Query: 171 SIEIYEEIARQ-----SLNN 185
           ++++  ++  +     +  N
Sbjct: 209 NLKLMRDLGDRGAQGRACGN 228

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 16/137 (11%), Positives = 39/137 (28%), Gaps = 9/137 (6%)

Query: 51  KAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSS-NEAISCLEQAVNMFCDIGRLS 109
           +A    +        L     A+ A     + Y      +EA +  +         G  +
Sbjct: 4   EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT 63

Query: 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ-----NEEVTTSANQ---CKQKVAQY 161
              R   ++  +     N +     F +  ++           + +A +           
Sbjct: 64  AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDL 123

Query: 162 AAELEQYHKSIEIYEEI 178
           A   ++Y KS+   ++ 
Sbjct: 124 AGARQEYEKSLVYAQQA 140

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 12/138 (8%), Positives = 39/138 (28%), Gaps = 22/138 (15%)

Query: 28  KYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTS 87
           ++++A   F       + +           ++        +   A + +++         
Sbjct: 41  RFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLP 100

Query: 88  SN----------------------EAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE 125
            +                       A    E+++            A  ++ + +L + E
Sbjct: 101 EDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160

Query: 126 HNIEQTIVFFEKAADMFQ 143
            N+ +    + +A D+F 
Sbjct: 161 KNLLEAQQHWLRARDIFA 178

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 16/177 (9%), Positives = 53/177 (29%), Gaps = 25/177 (14%)

Query: 28  KYEDAADLFDKA-------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAA 80
            +++A     +         +    A++    G  Y              +  +   D  
Sbjct: 98  NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK-SFGCPGPQDTGEFPEDVR 156

Query: 81  HCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAAD 140
           +  +      A+   E+ +++   +G  +   R +  +   +    N    ++  E+   
Sbjct: 157 NALQA-----AVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 211

Query: 141 MFQ----NEEVTTSANQ---CKQKVAQYAAELEQYHKSIEIYEEIAR-----QSLNN 185
           + +          + +        + ++    E Y K++ +  ++       QS  +
Sbjct: 212 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS 268

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 27/200 (13%), Positives = 65/200 (32%), Gaps = 18/200 (9%)

Query: 3   DQIARAEEFEKKAEKKLNG----------WGLFGSKYEDAADLFDKAANSFKLAKSWDKA 52
             +  AE  + + E+ +            + L   +++   D  +            +  
Sbjct: 26  FSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85

Query: 53  GATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAA 112
                 +     KL    +    +    + + +    EAI    +A      +      A
Sbjct: 86  E----TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKA 141

Query: 113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV-TTSANQCKQKVAQYAAELEQYHKS 171
            ++ ++AE Y        ++    +A D++QN  + +    Q    +A    + + Y K+
Sbjct: 142 EFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKA 201

Query: 172 IEIYE---EIARQSLNNNLL 188
           +   E   E+A    N+  +
Sbjct: 202 LPHLEAALELAMDIQNDRFI 221

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 17/169 (10%), Positives = 52/169 (30%), Gaps = 18/169 (10%)

Query: 29  YEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSS 88
            +   D+  +  +    A++    G  Y              +  +   +     +    
Sbjct: 110 CQRHLDISRELNDKVGEARALYNLGNVYHAKGK-SFGCPGPQDVGEFPEEVRDALQA--- 165

Query: 89  NEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ----- 143
             A+   E+ +++   +G  +   R +  +   +    N    ++  E+   + +     
Sbjct: 166 --AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK 223

Query: 144 NEEVTTSAN--QCKQKVAQYAAELEQYHKSIEIYEEIAR-----QSLNN 185
             E    +N       + ++    E Y K++ +  ++       QS  +
Sbjct: 224 AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS 272

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 23/144 (15%), Positives = 50/144 (34%), Gaps = 4/144 (2%)

Query: 65  KLESKHEAAQAYVDAAHCYKKTSS-NEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYE 123
           +L+ +   AQ+     + Y       +AI    + + +  ++       R    +   Y 
Sbjct: 259 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYT 318

Query: 124 SEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQ-YAAELEQYHKSIEIYEEIA--R 180
           +  N +Q + F EK  ++ +     +     +  ++         Y  +  I  E     
Sbjct: 319 ALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEID 378

Query: 181 QSLNNNLLKYGVKGHLLNAGICQL 204
            SLN    K G +  + N  + +L
Sbjct: 379 SSLNGVRPKLGRRHSMENMELMKL 402

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 3e-04
 Identities = 43/350 (12%), Positives = 98/350 (28%), Gaps = 128/350 (36%)

Query: 10  EFEKKAEKKLNGWGLFGSKYEDA----ADLFD-KAANSFK-----LAKSWDKAGATYVKL 59
              +   ++L    L    YE+      ++ + KA N+F      L  +  K    ++  
Sbjct: 228 HSIQAELRRL----LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283

Query: 60  AN-CHLKLE------SKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRL--SM 110
           A   H+ L+      +  E     +    C  +    E ++   + +++   I       
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI---IAESIRDG 340

Query: 111 AAR--YYK---------------------EIAELYES-----EH-NI-EQTIVFF----- 135
            A    +K                     E  ++++         +I    +        
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400

Query: 136 ----EKAADMF--------QNEEVTTSANQCKQKVAQYAAELEQYHKS-IEIYEEIARQS 182
                   +          Q +E T S      ++          H+S ++ Y  I +  
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY-NIPKTF 459

Query: 183 LNNNLLKYGVKG--------HLLNA--------------------------GICQLCKGD 208
            +++L+   +          HL N                                  G 
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519

Query: 209 VVAITNALERYQD------------IAASMD-----EEDI--AKFTDVVK 239
           ++     L+ Y+             + A +D     EE++  +K+TD+++
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 8e-04
 Identities = 37/249 (14%), Positives = 78/249 (31%), Gaps = 70/249 (28%)

Query: 81  HCYKKTSSNEAISCLEQAV--NMFC-DIGRLSMAARYYKEIAELYESEHNIEQTIVFF-- 135
           + YK       +S  E A   N  C D+  +  +    +EI  +  S+  +  T+  F  
Sbjct: 16  YQYKDI-----LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70

Query: 136 -----EKAADMFQNEEVTTS--------ANQCKQK---VAQYAAELEQYHKSIEIYEE-- 177
                E+    F  E +  +          + +Q       Y  + ++ +   +++ +  
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130

Query: 178 IARQ----SLNNNLLK---------YGVKG---HLLNAGICQ----LCK----------G 207
           ++R      L   LL+          GV G     +   +C      CK           
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190

Query: 208 DVVAITNALERYQDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKEL 267
           +  +    LE  Q +   +D    +         D  + +     ++   ++  LK+K  
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTS-------RSDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 268 EE-----DD 271
           E       +
Sbjct: 244 ENCLLVLLN 252

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 38.3 bits (90), Expect = 7e-04
 Identities = 14/130 (10%), Positives = 45/130 (34%), Gaps = 13/130 (10%)

Query: 69  KHEAAQAYVDAAHCYKKTSSN-EAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHN 127
           +    +A+ +  + +    +  +A+   EQ + +  + G  +     Y  +   Y     
Sbjct: 5   RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGE 64

Query: 128 IEQTIVFFEKAADMFQ-----NEEVTTSAN--QCKQKVAQYAAELEQYHKSIEIYEEI-- 178
            E    +++K   + +       E  +  +       +  Y   ++ + K + I +E+  
Sbjct: 65  FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 124

Query: 179 ---ARQSLNN 185
                ++  +
Sbjct: 125 RIGEGRACWS 134

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	273
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	100.0
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	100.0
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.87
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.85
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.85
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.85
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.84
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.84
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.83
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.82
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.81
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.81
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.81
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.81
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.81
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.8
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.79
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.79
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.77
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.77
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.75
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.75
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.75
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.74
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.73
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.73
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.73
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.72
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.7
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.69
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.68
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.68
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.67
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.66
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.64
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.64
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.64
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.63
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.62
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.61
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.61
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.61
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.59
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.59
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.59
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.58
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.58
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.57
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.56
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.56
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.56
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.55
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.55
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.55
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.55
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.55
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.54
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.53
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.53
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.52
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.52
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.52
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.51
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.51
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.51
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.51
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.5
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.49
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.48
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.48
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.47
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.47
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.47
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.46
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.46
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.45
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.44
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.44
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.44
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.43
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.42
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.42
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.41
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.41
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.41
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.39
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.39
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.38
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.37
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.37
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.37
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.36
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.34
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.34
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.33
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.31
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.31
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.3
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.3
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.3
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.28
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.28
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.28
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.26
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.25
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.25
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.24
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.24
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.23
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.23
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.23
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.21
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.19
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.18
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.18
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.18
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.18
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.17
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.17
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.17
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.16
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.15
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.14
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.13
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.12
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.11
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.1
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.1
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.09
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.09
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.08
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.08
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.08
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.07
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.06
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.06
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.06
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.06
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.05
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.05
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.05
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.03
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.03
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.02
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.01
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.01
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.0
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.0
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.99
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.98
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.97
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.96
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.95
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.95
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.94
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.93
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.92
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.92
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.92
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.9
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.9
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.9
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.9
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.89
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.89
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.89
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.88
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.86
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.86
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.85
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.84
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.84
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.82
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.81
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.81
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.81
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.8
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.8
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	98.8
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.77
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.76
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.74
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.73
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.69
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.68
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.67
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.67
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	98.63
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.57
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.56
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.5
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.5
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.49
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.46
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	98.39
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.39
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.34
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.29
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.27
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.24
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.1
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	98.06
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.01
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.95
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.92
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.87
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.86
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.82
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	97.72
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	97.71
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.69
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.64
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	97.62
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.58
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	97.54
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	97.39
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.36
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.28
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.27
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.17
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.04
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	97.01
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.01
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	96.8
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.63
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	96.62
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.6
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.59
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.54
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.37
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	96.3
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	96.07
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	95.94
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	95.7
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.55
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	95.4
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	94.54
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	94.2
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	94.03
3t5x_A	203	PCI domain-containing protein 2; PCI, mRNA nuclear	93.87
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	93.83
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	93.39
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	93.06
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	92.99
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	92.88
2wm9_A	428	Dedicator of cytokinesis protein 9; polymorphism,	92.31
2yin_A	436	DOCK2, dedicator of cytokinesis protein 2; apoptos	92.2
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	92.17
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	92.14
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	92.13
2r17_C	298	Vacuolar protein sorting-associated protein 35; pr	92.1
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	92.07
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	91.65
3t5v_B	455	Nuclear mRNA export protein THP1; PCI, mRNA nuclea	91.22
4b4t_O	393	26S proteasome regulatory subunit RPN9; hydrolase,	90.84
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	90.78
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	90.58
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	90.34
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	90.13
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	90.0
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	88.74
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	88.61
2yin_A	436	DOCK2, dedicator of cytokinesis protein 2; apoptos	88.27
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	87.94
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	87.48
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	87.46
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	87.01
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	86.35
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	84.39
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	80.73

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=100.00  E-value=5.2e-41  Score=288.48  Aligned_cols=266  Identities=33%  Similarity=0.550  Sum_probs=239.8

Q ss_pred             HhhHHHHHHHHHHhhcc----ccCCC---CC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024043            5 IARAEEFEKKAEKKLNG----WGLFG---SK-YEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAY   76 (273)
Q Consensus         5 ~~~a~~l~~~Aek~~k~----~~~~~---~~-~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~   76 (273)
                      |++|++++++|+|++|+    |++|+   |+ +++|+++|.++|++|...|+|++|+++|.+|++++.+.+++...+.++
T Consensus         1 ~~~a~~~~~~a~k~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~   80 (292)
T 1qqe_A            1 ISDPVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTY   80 (292)
T ss_dssp             CCCHHHHHHHHHHHSSCCCTHHHHHSCCSHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHhCcCCCcchhcCCCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            46899999999999983    12333   44 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhccCCcccHHHH
Q 024043           77 VDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE-HNIEQTIVFFEKAADMFQNEEVTTSANQC  154 (273)
Q Consensus        77 ~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~-g~~~~A~~~y~~Al~~~~~~~~~~~~~~~  154 (273)
                      .++|.+|... ++++|+.+|++|+.+++..|++..++.++.++|.+|... |++++|+.+|++|+++++..+++.....+
T Consensus        81 ~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~  160 (292)
T 1qqe_A           81 VEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKC  160 (292)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHH
Confidence            9999999888 999999999999999999999999999999999999996 99999999999999999988877777889


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH--------------
Q 024043          155 KQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ--------------  220 (273)
Q Consensus       155 ~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~--------------  220 (273)
                      +.++|.++..+|+|++|+++|++++...+..+...++....++++|.|++..||++.|..+++++.              
T Consensus       161 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~  240 (292)
T 1qqe_A          161 FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNF  240 (292)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence            999999999999999999999999877666554445666788999999999999999999998754              


Q ss_pred             --HHHHHHhhcCHhHHHHHHHhhhccCCCchhHHHHHHHHHHhccccccccCCCC
Q 024043          221 --DIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKELEEDDLT  273 (273)
Q Consensus       221 --~ll~a~~~~d~~~~~~~~~~~~~~~~ld~~~~~~l~~~~~~~~~~~~~~~~~~  273 (273)
                        .+..++..+|.+.+++++..|+.+.++|||.+.++++||+.+++   +++|||
T Consensus       241 l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~~~---~~~~~~  292 (292)
T 1qqe_A          241 LKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESIQQ---QEDDLL  292 (292)
T ss_dssp             HHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHH---HHCC--
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhhc---cccccC
Confidence              35667777899999999999999999999999999999999963   456775

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=100.00  E-value=9.9e-36  Score=257.32  Aligned_cols=256  Identities=23%  Similarity=0.288  Sum_probs=232.7

Q ss_pred             CCc-hHhhHHHHHHHHHHhhc-cccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024043            1 MGD-QIARAEEFEKKAEKKLN-GWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVD   78 (273)
Q Consensus         1 ~~~-~~~~a~~l~~~Aek~~k-~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~   78 (273)
                      |++ ..++|.+++++|+|+++ +++.|+|+|++|+.+|.+++.+|...|+|++|+++|.++++++.+.+++..++.++.+
T Consensus         2 ~~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~   81 (307)
T 2ifu_A            2 IAAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQ   81 (307)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            666 58899999999999998 4544679999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHH
Q 024043           79 AAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQK  157 (273)
Q Consensus        79 ~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~  157 (273)
                      +|.+|... ++++|+.+|++|++++...|++...+.++.++|.+|.. |++++|+.+|++|+++++..+++.....++.+
T Consensus        82 lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~  160 (307)
T 2ifu_A           82 AGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGK  160 (307)
T ss_dssp             HHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence            99999988 99999999999999999999999999999999999999 99999999999999999998887788899999


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH---------------HH
Q 024043          158 VAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ---------------DI  222 (273)
Q Consensus       158 ~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~---------------~l  222 (273)
                      +|.++..+|+|++|+++|++++......+. .+.....++++|.+++..||+..|..+++++.               .+
T Consensus       161 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~p~~~~~~e~~~l~~l  239 (307)
T 2ifu_A          161 ASRLLVRQQKFDEAAASLQKEKSMYKEMEN-YPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDL  239 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTSTTSHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence            999999999999999999999876555432 34455678889999999999999999998853               56


Q ss_pred             HHHHhhcCHhHHHHHHHhhhccCCCchhHHHHHHHHH
Q 024043          223 AASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVK  259 (273)
Q Consensus       223 l~a~~~~d~~~~~~~~~~~~~~~~ld~~~~~~l~~~~  259 (273)
                      +.+++.+|.+.+++ +..|+.+.+||||+++++.+++
T Consensus       240 ~~~~~~~d~~~~~~-~~~~~~~~~ld~~~~~~~~~l~  275 (307)
T 2ifu_A          240 LQAYDEQDEEQLLR-VCRSPLVTYMDNDYAKLAISLK  275 (307)
T ss_dssp             HHHHHTTCHHHHHH-HTTSHHHHTSCHHHHHHHHTCC
T ss_pred             HHHHHhcCHHHHHH-HHhCchhhhhhHHHHHHHHhCC
Confidence            77788899999999 7779999999999999887664

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.87  E-value=3.3e-19  Score=157.54  Aligned_cols=206  Identities=20%  Similarity=0.129  Sum_probs=167.9

Q ss_pred             HhhHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHH
Q 024043            5 IARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLES-KHEAAQAYVDAAHCY   83 (273)
Q Consensus         5 ~~~a~~l~~~Aek~~k~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~aa~~~~~~~~~~   83 (273)
                      .++|.+++++|.+.++.    .++...-+..+...|.+|...|++++|+.++.+|++++.+.++ ....+.++.++|.+|
T Consensus       119 ~~~A~~~~~~al~~~~~----~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~  194 (383)
T 3ulq_A          119 YLSAIKFFKKAESKLIF----VKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNF  194 (383)
T ss_dssp             HHHHHHHHHHHHTTGGG----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhh----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHH
Confidence            34555555555554442    1344444556666689999999999999999999999999987 889999999999999


Q ss_pred             hcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHH
Q 024043           84 KKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYA  162 (273)
Q Consensus        84 ~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~  162 (273)
                      ... ++++|+.+|++|+++.+..++....+.++.++|.+|..+|++++|+.+|++|+++++..++......++..+|.++
T Consensus       195 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~  274 (383)
T 3ulq_A          195 LDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIH  274 (383)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence            888 9999999999999999999999999999999999999999999999999999999999887556689999999999


Q ss_pred             HHhcCHHHHHHHHHHHHHHH--hccchhhhchhhHHHHHHHHHHhcCC---HHHHHHHHHH
Q 024043          163 AELEQYHKSIEIYEEIARQS--LNNNLLKYGVKGHLLNAGICQLCKGD---VVAITNALER  218 (273)
Q Consensus       163 ~~~g~y~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~gl~~l~~gd---~~~A~~~~~~  218 (273)
                      ..+|++++|+++|++++...  .+++.  + . ..+..++.++...|+   +.+|...+++
T Consensus       275 ~~~g~~~~A~~~~~~al~~~~~~~~~~--~-~-~~~~~l~~~~~~~~~~~~~~~al~~~~~  331 (383)
T 3ulq_A          275 YKLGKIDKAHEYHSKGMAYSQKAGDVI--Y-L-SEFEFLKSLYLSGPDEEAIQGFFDFLES  331 (383)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHTCHH--H-H-HHHHHHHHHHTSSCCHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHcCCHH--H-H-HHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            99999999999999997443  33321  1 1 124557888888888   4444444443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.85  E-value=1.1e-18  Score=154.01  Aligned_cols=205  Identities=18%  Similarity=0.104  Sum_probs=161.8

Q ss_pred             hhHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHh
Q 024043            6 ARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLES-KHEAAQAYVDAAHCYK   84 (273)
Q Consensus         6 ~~a~~l~~~Aek~~k~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~aa~~~~~~~~~~~   84 (273)
                      .+|.+.+++|.+.++.    .++....+..+...|.+|...|++++|+.++.+|++++.+.++ ....+.++.++|.+|.
T Consensus       118 ~~A~~~~~~al~~~~~----~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~  193 (378)
T 3q15_A          118 VEAIGYYREAEKELPF----VSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD  193 (378)
T ss_dssp             HHHHHHHHHHHTTGGG----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh----CCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence            3445555555544431    1233444455555688999999999999999999999998886 6789999999999998


Q ss_pred             cc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHH
Q 024043           85 KT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAA  163 (273)
Q Consensus        85 ~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~  163 (273)
                      .. ++++|+++|++|+.+....++....+.++.++|.+|...|++++|+.+|++|+++++..+++.. ..++..+|.++.
T Consensus       194 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~~~~  272 (378)
T 3q15_A          194 DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGLSWTLC  272 (378)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHHHHHHHHH
Confidence            88 9999999999999999999999999999999999999999999999999999999998887766 889999999999


Q ss_pred             HhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCC---HHHHHHHHH
Q 024043          164 ELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGD---VVAITNALE  217 (273)
Q Consensus       164 ~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd---~~~A~~~~~  217 (273)
                      .+|++++|+.++++++......+...+  ...+..++.++...|+   +.+|...++
T Consensus       273 ~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~l~~ly~~~~~~~~~~~al~~~~  327 (378)
T 3q15_A          273 KAGQTQKAFQFIEEGLDHITARSHKFY--KELFLFLQAVYKETVDERKIHDLLSYFE  327 (378)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCTTCCSCH--HHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            999999999999999755332111111  1123445556666777   444444444

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.85  E-value=3.3e-19  Score=153.52  Aligned_cols=189  Identities=15%  Similarity=0.057  Sum_probs=157.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcC
Q 024043           27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIG  106 (273)
Q Consensus        27 ~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~eA~~~~~~Al~~~~~~g  106 (273)
                      ++...++..|..+|.+|...|++++|+.+|.+|++++...|++...+.++.++|.+|...++++|+.+|++|+++++..|
T Consensus        70 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~g~~~~A~~~~~~Al~~~~~~~  149 (307)
T 2ifu_A           70 RSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEE  149 (307)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Confidence            45556666777778889999999999999999999999999999999999999999976899999999999999999999


Q ss_pred             ChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccc
Q 024043          107 RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNN  186 (273)
Q Consensus       107 ~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~  186 (273)
                      ++...+.++.++|.+|..+|+|++|+.+|++|+++++..+.......++..+|.++..+|++++|+.+|++++ ..+...
T Consensus       150 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~  228 (307)
T 2ifu_A          150 RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS  228 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred             ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence            9999999999999999999999999999999999999887766667789999999999999999999999997 444322


Q ss_pred             hhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          187 LLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       187 ~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      .  ......+..++.+ ...||.+.+.. +..|.
T Consensus       229 ~--~~e~~~l~~l~~~-~~~~d~~~~~~-~~~~~  258 (307)
T 2ifu_A          229 G--SEDCAALEDLLQA-YDEQDEEQLLR-VCRSP  258 (307)
T ss_dssp             T--SHHHHHHHHHHHH-HHTTCHHHHHH-HTTSH
T ss_pred             C--CHHHHHHHHHHHH-HHhcCHHHHHH-HHhCc
Confidence            1  1111222333333 35788877777 33343

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.85  E-value=1.6e-18  Score=153.19  Aligned_cols=220  Identities=11%  Similarity=0.050  Sum_probs=181.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCC-hhHHHHHHH
Q 024043           39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR-LSMAARYYK  116 (273)
Q Consensus        39 a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~-~~~~a~~l~  116 (273)
                      .|..+...|++++|+.+|.+|..+....+++...+.++..+|.+|... ++++|+.++++|++++...++ ....+.++.
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            578888999999999999999999999999999999999999999888 999999999999999999998 889999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHH
Q 024043          117 EIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHL  196 (273)
Q Consensus       117 ~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~  196 (273)
                      ++|.++...|++++|+.+|++|+++++..+++...+.++.++|.++..+|+|++|+++|++++........ .......+
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~  267 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI-LPSLPQAY  267 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-GGGHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc-chhHHHHH
Confidence            99999999999999999999999999999888888899999999999999999999999999754322211 12345678


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHH-----------------hhcCHhHHHHHHHhhhccCCCchhHHHHHHHHH
Q 024043          197 LNAGICQLCKGDVVAITNALERYQDIAASM-----------------DEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVK  259 (273)
Q Consensus       197 ~~~gl~~l~~gd~~~A~~~~~~~~~ll~a~-----------------~~~d~~~~~~~~~~~~~~~~ld~~~~~~l~~~~  259 (273)
                      .++|.++...|+++.|...+++...+....                 ..++.+.+.+++.-+... ...|....++..+.
T Consensus       268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la  346 (383)
T 3ulq_A          268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVA  346 (383)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHH
Confidence            899999999999999999998866432211                 224445566666666655 33344444444444


Q ss_pred             H
Q 024043          260 E  260 (273)
Q Consensus       260 ~  260 (273)
                      .
T Consensus       347 ~  347 (383)
T 3ulq_A          347 K  347 (383)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.84  E-value=7.4e-19  Score=150.27  Aligned_cols=214  Identities=11%  Similarity=0.064  Sum_probs=163.1

Q ss_pred             hHhhHHHHHHHHHHhhccccCC----------------CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 024043            4 QIARAEEFEKKAEKKLNGWGLF----------------GSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLE   67 (273)
Q Consensus         4 ~~~~a~~l~~~Aek~~k~~~~~----------------~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~   67 (273)
                      ..++|.+++.+|-..+...+.|                .++...++..|..+|.+|...|++++|+.+|.+|+.++...|
T Consensus        32 ~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g  111 (292)
T 1qqe_A           32 KFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG  111 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC
Confidence            3677778888876655411111                023344445555667888899999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 024043           68 SKHEAAQAYVDAAHCYKK--TSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE  145 (273)
Q Consensus        68 ~~~~aa~~~~~~~~~~~~--~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~  145 (273)
                      ++..++.++.++|.+|..  .++++|+.+|++|+.+++..++....+.++.++|.++..+|+|++|+.+|++++++....
T Consensus       112 ~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  191 (292)
T 1qqe_A          112 QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN  191 (292)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred             CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence            999999999999999987  499999999999999999999999999999999999999999999999999999998776


Q ss_pred             CCc-ccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          146 EVT-TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       146 ~~~-~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      +.. .....++.++|.++..+|++++|+.+|++++...++....  .....+..++.++ ..+|.....+++..|.
T Consensus       192 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~--~~~~~l~~l~~~~-~~~~~~~~~~A~~~~~  264 (292)
T 1qqe_A          192 RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS--RESNFLKSLIDAV-NEGDSEQLSEHCKEFD  264 (292)
T ss_dssp             TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHH-HTTCTTTHHHHHHHHT
T ss_pred             CcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc--HHHHHHHHHHHHH-HcCCHHHHHHHHHHhc
Confidence            653 3566789999999999999999999999996433332110  1112233334333 3455555555655553

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.84  E-value=2.8e-18  Score=151.48  Aligned_cols=217  Identities=12%  Similarity=0.074  Sum_probs=180.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCC-hhHHHHHHH
Q 024043           39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR-LSMAARYYK  116 (273)
Q Consensus        39 a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~-~~~~a~~l~  116 (273)
                      .|..+...|++++|+.+|.+|..+....+++...+.++.++|.+|... ++++|+.++++|++++...++ ....+.++.
T Consensus       107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  186 (378)
T 3q15_A          107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF  186 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence            477788999999999999999999999999999999999999999888 999999999999999999887 668999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh--ccchhhhchhh
Q 024043          117 EIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSL--NNNLLKYGVKG  194 (273)
Q Consensus       117 ~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~--~~~~~~~~~~~  194 (273)
                      ++|.++...|++++|+++|++|+++++..+++...+.++.++|.++..+|++++|+++|++++....  +++   . ...
T Consensus       187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~---~-~~~  262 (378)
T 3q15_A          187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD---L-LPK  262 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG---G-HHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh---h-HHH
Confidence            9999999999999999999999999999888888889999999999999999999999999975332  332   2 255


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHH---------------HHHH--hhcCHhHHHHHHHhhhccCCCchhHHHHHHH
Q 024043          195 HLLNAGICQLCKGDVVAITNALERYQDI---------------AASM--DEEDIAKFTDVVKEFDSMTPLDPWKTTLLLR  257 (273)
Q Consensus       195 ~~~~~gl~~l~~gd~~~A~~~~~~~~~l---------------l~a~--~~~d~~~~~~~~~~~~~~~~ld~~~~~~l~~  257 (273)
                      .+.++|.++...|+++.|...+++...+               +..+  ..++.+.+.+++.-+... ...|....+...
T Consensus       263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~  341 (378)
T 3q15_A          263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARS  341 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHH
Confidence            7788999999999999999999986532               2211  334555677777766653 333444444444


Q ss_pred             HHH
Q 024043          258 VKE  260 (273)
Q Consensus       258 ~~~  260 (273)
                      +..
T Consensus       342 la~  344 (378)
T 3q15_A          342 AAA  344 (378)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.83  E-value=1.1e-17  Score=147.18  Aligned_cols=215  Identities=12%  Similarity=0.096  Sum_probs=176.5

Q ss_pred             HhhHHHHHHHHHHhhcc-------------ccCC-CCCHHHHHHHHHHH--------------------HHHHHHcCCHH
Q 024043            5 IARAEEFEKKAEKKLNG-------------WGLF-GSKYEDAADLFDKA--------------------ANSFKLAKSWD   50 (273)
Q Consensus         5 ~~~a~~l~~~Aek~~k~-------------~~~~-~~~~~~A~~~~~~a--------------------~~~~~~~~~~~   50 (273)
                      .++|..++.+|-+.-..             ..++ .+++++|..+|.++                    |.+|...|+++
T Consensus        25 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  104 (406)
T 3sf4_A           25 CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFD  104 (406)
T ss_dssp             HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHH
Confidence            56777777777665321             0112 27778887776654                    56777889999


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-C--------------------HHHHHHHHHHHHHHHHhcCChh
Q 024043           51 KAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-S--------------------SNEAISCLEQAVNMFCDIGRLS  109 (273)
Q Consensus        51 ~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~--------------------~~eA~~~~~~Al~~~~~~g~~~  109 (273)
                      +|+.+|.+++.+....+++...+.++..+|.+|... +                    +++|+.+|++++.+....++..
T Consensus       105 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~  184 (406)
T 3sf4_A          105 EAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRA  184 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcH
Confidence            999999999999999999999999999999999777 8                    9999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhh
Q 024043          110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLK  189 (273)
Q Consensus       110 ~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~  189 (273)
                      ..+.++.++|.++...|++++|+.++++|+++++..+++.....++..+|.++..+|++++|+.+|++++......+ ..
T Consensus       185 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~  263 (406)
T 3sf4_A          185 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK-DR  263 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCc-Cc
Confidence            99999999999999999999999999999999998887777788899999999999999999999999875443321 12


Q ss_pred             hchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          190 YGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       190 ~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      ......+..+|.++...|++..|...+++..
T Consensus       264 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  294 (406)
T 3sf4_A          264 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL  294 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            3345567788899999999999988888765

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.82  E-value=1.5e-17  Score=138.86  Aligned_cols=213  Identities=15%  Similarity=0.160  Sum_probs=175.6

Q ss_pred             HhhHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHH
Q 024043            5 IARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKL--ESKHEAAQAYVDAAHC   82 (273)
Q Consensus         5 ~~~a~~l~~~Aek~~k~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~aa~~~~~~~~~   82 (273)
                      +.+|.+++++|-+.++..  .+++...-...+...|.+|...|++++|+.+|.+++.+..+.  ++....+.++..+|.+
T Consensus        17 ~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~   94 (283)
T 3edt_B           17 RGSAVPLCKQALEDLEKT--SGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL   94 (283)
T ss_dssp             SSSHHHHHHHHHHHHHHH--HCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence            679999999999988731  234445566778888999999999999999999999999887  6778889999999999


Q ss_pred             Hhcc-CHHHHHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC--CcccHHHHHHH
Q 024043           83 YKKT-SSNEAISCLEQAVNMFCDIGR--LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE--VTTSANQCKQK  157 (273)
Q Consensus        83 ~~~~-~~~eA~~~~~~Al~~~~~~g~--~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~--~~~~~~~~~~~  157 (273)
                      |... ++++|+++|++++.++.+.+.  ....+.++.++|.++...|++++|+.+|++++++++...  +......++..
T Consensus        95 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  174 (283)
T 3edt_B           95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN  174 (283)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            9888 999999999999999987633  467889999999999999999999999999999987652  23456788999


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhccch------------------------------------------hhhchhhH
Q 024043          158 VAQYAAELEQYHKSIEIYEEIARQSLNNNL------------------------------------------LKYGVKGH  195 (273)
Q Consensus       158 ~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~  195 (273)
                      +|.++..+|++++|+.+|++++........                                          ........
T Consensus       175 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (283)
T 3edt_B          175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTT  254 (283)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            999999999999999999999754222100                                          01223345


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHH
Q 024043          196 LLNAGICQLCKGDVVAITNALERY  219 (273)
Q Consensus       196 ~~~~gl~~l~~gd~~~A~~~~~~~  219 (273)
                      +..+|.++...|++.+|...+++.
T Consensus       255 ~~~la~~~~~~g~~~~A~~~~~~a  278 (283)
T 3edt_B          255 LRSLGALYRRQGKLEAAHTLEDCA  278 (283)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH
Confidence            667788888899998888888775

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.81  E-value=2.2e-17  Score=145.26  Aligned_cols=220  Identities=14%  Similarity=0.121  Sum_probs=186.3

Q ss_pred             HhhHHHHHHHHHHhhc---------------cccCC-CCCHHHHHHHHHHH--------------------HHHHHHcCC
Q 024043            5 IARAEEFEKKAEKKLN---------------GWGLF-GSKYEDAADLFDKA--------------------ANSFKLAKS   48 (273)
Q Consensus         5 ~~~a~~l~~~Aek~~k---------------~~~~~-~~~~~~A~~~~~~a--------------------~~~~~~~~~   48 (273)
                      .++|.+++.+|-+...               +..++ .|++++|..+|.++                    |.+|...|+
T Consensus        63 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  142 (406)
T 3sf4_A           63 YAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  142 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence            5677777777765532               10112 37888888877754                    566777888


Q ss_pred             --------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCC
Q 024043           49 --------------------WDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR  107 (273)
Q Consensus        49 --------------------~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~  107 (273)
                                          +++|+..|.++..+..+.++....+.++.++|.+|... ++++|+.++++++.+....++
T Consensus       143 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  222 (406)
T 3sf4_A          143 SFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD  222 (406)
T ss_dssp             TCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC
Confidence                                99999999999999999999999999999999999877 999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccch
Q 024043          108 LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNL  187 (273)
Q Consensus       108 ~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~  187 (273)
                      ....+.++.++|.++...|++++|+.+|++|+++.+..+++.....++..+|.++...|++++|+.+|++++....... 
T Consensus       223 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-  301 (406)
T 3sf4_A          223 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN-  301 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-
T ss_pred             cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC-
Confidence            9999999999999999999999999999999999999888777789999999999999999999999999975433321 


Q ss_pred             hhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 024043          188 LKYGVKGHLLNAGICQLCKGDVVAITNALERYQDIAAS  225 (273)
Q Consensus       188 ~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~a  225 (273)
                      ........+..+|.++...|++.+|...+++...+...
T Consensus       302 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  339 (406)
T 3sf4_A          302 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  339 (406)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            12334557778899999999999999999998765543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.81  E-value=1.7e-17  Score=146.95  Aligned_cols=221  Identities=12%  Similarity=0.093  Sum_probs=187.2

Q ss_pred             HhhHHHHHHHHHHhhc---------------cccC-CCCCHHHHHHHHHHH--------------------HHHHHHcCC
Q 024043            5 IARAEEFEKKAEKKLN---------------GWGL-FGSKYEDAADLFDKA--------------------ANSFKLAKS   48 (273)
Q Consensus         5 ~~~a~~l~~~Aek~~k---------------~~~~-~~~~~~~A~~~~~~a--------------------~~~~~~~~~   48 (273)
                      .++|.+++.+|-+...               +..+ ..|++++|..+|.++                    |.+|...|+
T Consensus       102 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  181 (411)
T 4a1s_A          102 YNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK  181 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence            5677777777776642               0011 237888888887765                    556777889


Q ss_pred             -----------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhH
Q 024043           49 -----------------WDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM  110 (273)
Q Consensus        49 -----------------~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~  110 (273)
                                       +++|+.+|.++..+....++....+.++..+|.+|... ++++|+.+|++++.+....++...
T Consensus       182 ~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  261 (411)
T 4a1s_A          182 HLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAA  261 (411)
T ss_dssp             HHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             ccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHH
Confidence                             99999999999999999999999999999999999887 999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhh
Q 024043          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY  190 (273)
Q Consensus       111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~  190 (273)
                      .+.++.++|.++...|++++|+.+|++|+++....++......++..+|.++...|++++|+.+|++++....... ...
T Consensus       262 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~  340 (411)
T 4a1s_A          262 ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG-DRI  340 (411)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHH
T ss_pred             HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChH
Confidence            9999999999999999999999999999999998888777789999999999999999999999999975433221 123


Q ss_pred             chhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 024043          191 GVKGHLLNAGICQLCKGDVVAITNALERYQDIAASM  226 (273)
Q Consensus       191 ~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~a~  226 (273)
                      .....+..++.++...|++.+|...+++...+.+.+
T Consensus       341 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  376 (411)
T 4a1s_A          341 GEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXX  376 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence            345577888999999999999999999987665544

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.81  E-value=2.7e-17  Score=145.64  Aligned_cols=217  Identities=11%  Similarity=0.124  Sum_probs=183.3

Q ss_pred             hHhhHHHHHHHHHHhhcc-------------ccCCC-CCHHHHHHHHHHH--------------------HHHHHHcCCH
Q 024043            4 QIARAEEFEKKAEKKLNG-------------WGLFG-SKYEDAADLFDKA--------------------ANSFKLAKSW   49 (273)
Q Consensus         4 ~~~~a~~l~~~Aek~~k~-------------~~~~~-~~~~~A~~~~~~a--------------------~~~~~~~~~~   49 (273)
                      ..++|.+++.+|-+.-.+             ..++. +++++|..+|.++                    |.+|...|++
T Consensus        63 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  142 (411)
T 4a1s_A           63 DCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRF  142 (411)
T ss_dssp             CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCH
Confidence            367888888888876431             01122 8888988887765                    5567788999


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-C-----------------HHHHHHHHHHHHHHHHhcCChhHH
Q 024043           50 DKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-S-----------------SNEAISCLEQAVNMFCDIGRLSMA  111 (273)
Q Consensus        50 ~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~-----------------~~eA~~~~~~Al~~~~~~g~~~~~  111 (273)
                      ++|..+|.+++.+....++....+.++..+|.+|... +                 +++|+.++++++.+....++....
T Consensus       143 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~  222 (411)
T 4a1s_A          143 DEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQ  222 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999999999999999999999999877 8                 999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhc
Q 024043          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG  191 (273)
Q Consensus       112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~  191 (273)
                      +.++.++|.++...|++++|+.+|++|+++....++......++..+|.++..+|++++|+.+|++++....... ....
T Consensus       223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~  301 (411)
T 4a1s_A          223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG-EREV  301 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTT-CHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC-CHHH
Confidence            999999999999999999999999999999998887777778999999999999999999999999975443321 1223


Q ss_pred             hhhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 024043          192 VKGHLLNAGICQLCKGDVVAITNALERYQD  221 (273)
Q Consensus       192 ~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~  221 (273)
                      ....+..+|.++...|++.+|...+++...
T Consensus       302 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~  331 (411)
T 4a1s_A          302 EAQSCYSLGNTYTLLHEFNTAIEYHNRHLA  331 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            455677889999999999999999888653

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.81  E-value=3.9e-17  Score=139.19  Aligned_cols=218  Identities=12%  Similarity=0.101  Sum_probs=175.6

Q ss_pred             HhhHHHHHHHHHHhhccc-------------cCC-CCCHHHHHHHHHHH--------------------HHHHHHcCCHH
Q 024043            5 IARAEEFEKKAEKKLNGW-------------GLF-GSKYEDAADLFDKA--------------------ANSFKLAKSWD   50 (273)
Q Consensus         5 ~~~a~~l~~~Aek~~k~~-------------~~~-~~~~~~A~~~~~~a--------------------~~~~~~~~~~~   50 (273)
                      .++|..++.+|-+.-.+.             .++ .+++++|..+|.++                    |.+|...|+++
T Consensus        21 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  100 (338)
T 3ro2_A           21 CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFD  100 (338)
T ss_dssp             HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHH
Confidence            567778888777653210             111 36777777776653                    56777889999


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-C--------------------HHHHHHHHHHHHHHHHhcCChh
Q 024043           51 KAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-S--------------------SNEAISCLEQAVNMFCDIGRLS  109 (273)
Q Consensus        51 ~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~--------------------~~eA~~~~~~Al~~~~~~g~~~  109 (273)
                      +|..++.++..+..+.+++...+.++..+|.+|... +                    +++|+.++++++.+....++..
T Consensus       101 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~  180 (338)
T 3ro2_A          101 EAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRA  180 (338)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence            999999999999999998888899999999999777 7                    8999999999999999999989


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhh
Q 024043          110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLK  189 (273)
Q Consensus       110 ~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~  189 (273)
                      ..+.++..+|.++...|++++|+.++++++++.+..+++.....++..+|.++...|++++|+.+|++++......+ ..
T Consensus       181 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~  259 (338)
T 3ro2_A          181 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK-DR  259 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc-ch
Confidence            99999999999999999999999999999999988877777778899999999999999999999999875433321 12


Q ss_pred             hchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 024043          190 YGVKGHLLNAGICQLCKGDVVAITNALERYQDIA  223 (273)
Q Consensus       190 ~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll  223 (273)
                      ......+..+|.++...|++..|...+++...+.
T Consensus       260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  293 (338)
T 3ro2_A          260 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA  293 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            2344566778888999999999998888876443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.81  E-value=2.5e-17  Score=140.41  Aligned_cols=218  Identities=14%  Similarity=0.125  Sum_probs=183.2

Q ss_pred             HhhHHHHHHHHHHhhc--c-------------ccC-CCCCHHHHHHHHHHH--------------------HHHHHHcCC
Q 024043            5 IARAEEFEKKAEKKLN--G-------------WGL-FGSKYEDAADLFDKA--------------------ANSFKLAKS   48 (273)
Q Consensus         5 ~~~a~~l~~~Aek~~k--~-------------~~~-~~~~~~~A~~~~~~a--------------------~~~~~~~~~   48 (273)
                      .++|.+++.+|-+..+  +             ..+ ..+++++|...|.++                    |.+|...|+
T Consensus        59 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~  138 (338)
T 3ro2_A           59 YAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  138 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence            5677777777665532  0             011 237888888877764                    556777888


Q ss_pred             --------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCC
Q 024043           49 --------------------WDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR  107 (273)
Q Consensus        49 --------------------~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~  107 (273)
                                          +++|..++.++..+....++....+.++..+|.++... ++++|+.++++++.+....++
T Consensus       139 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~  218 (338)
T 3ro2_A          139 SFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD  218 (338)
T ss_dssp             TSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             ccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Confidence                                99999999999999999999999999999999999877 999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccch
Q 024043          108 LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNL  187 (273)
Q Consensus       108 ~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~  187 (273)
                      ....+.++..+|.++...|++++|+.++++++++....+++.....++..+|.++...|++++|+.+|++++....... 
T Consensus       219 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-  297 (338)
T 3ro2_A          219 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK-  297 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC-
Confidence            9999999999999999999999999999999999999888778889999999999999999999999999975433221 


Q ss_pred             hhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 024043          188 LKYGVKGHLLNAGICQLCKGDVVAITNALERYQDIA  223 (273)
Q Consensus       188 ~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll  223 (273)
                      ........+..++.++...|++.+|...+++...+.
T Consensus       298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  333 (338)
T 3ro2_A          298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS  333 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred             CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence            123345567788999999999999999999876544

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.80  E-value=4.5e-17  Score=145.44  Aligned_cols=183  Identities=10%  Similarity=0.009  Sum_probs=159.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHH
Q 024043           36 FDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARY  114 (273)
Q Consensus        36 ~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~  114 (273)
                      +...|.+|...|+|++|.+++.++.......++......+...++.++... ++++|+.++++++.+....++....+++
T Consensus        58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  137 (434)
T 4b4t_Q           58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL  137 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence            456789999999999999999999999999988888888889999998777 9999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhh
Q 024043          115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKG  194 (273)
Q Consensus       115 l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~  194 (273)
                      +.++|.+|...|+|++|+.++++++......++......++...|.++..+|+|++|..+|+++.......+........
T Consensus       138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  217 (434)
T 4b4t_Q          138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE  217 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence            99999999999999999999999999999888877888999999999999999999999999997544333211222345


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHH
Q 024043          195 HLLNAGICQLCKGDVVAITNALER  218 (273)
Q Consensus       195 ~~~~~gl~~l~~gd~~~A~~~~~~  218 (273)
                      .+...|.++...|++.+|...+.+
T Consensus       218 ~~~~~g~~~~~~~~y~~A~~~~~~  241 (434)
T 4b4t_Q          218 LDLMSGILHCEDKDYKTAFSYFFE  241 (434)
T ss_dssp             HHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHH
Confidence            666778899999999998776654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.79  E-value=1.2e-16  Score=135.48  Aligned_cols=215  Identities=16%  Similarity=0.174  Sum_probs=174.3

Q ss_pred             HhhHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHH
Q 024043            5 IARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKL--ESKHEAAQAYVDAAHC   82 (273)
Q Consensus         5 ~~~a~~l~~~Aek~~k~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~aa~~~~~~~~~   82 (273)
                      .++|.+++.++-+.....  .+++...-...+...|.+|...|++++|..+|.+++.+..+.  ++....+.++..+|.+
T Consensus        43 ~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~  120 (311)
T 3nf1_A           43 YEVAVPLCKQALEDLEKT--SGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVL  120 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHH--HCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            456777777776665521  123445556677778999999999999999999999999877  6777888999999999


Q ss_pred             Hhcc-CHHHHHHHHHHHHHHHHhc--CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc--CCcccHHHHHHH
Q 024043           83 YKKT-SSNEAISCLEQAVNMFCDI--GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE--EVTTSANQCKQK  157 (273)
Q Consensus        83 ~~~~-~~~eA~~~~~~Al~~~~~~--g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~--~~~~~~~~~~~~  157 (273)
                      |... ++++|+.+|++++.++...  ++....+.++.++|.++...|++++|+.+|++++++++..  ++......++..
T Consensus       121 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  200 (311)
T 3nf1_A          121 YGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNN  200 (311)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHH
T ss_pred             HHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            9888 9999999999999999887  7778889999999999999999999999999999998876  334566788999


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhccch------------------------------------------hhhchhhH
Q 024043          158 VAQYAAELEQYHKSIEIYEEIARQSLNNNL------------------------------------------LKYGVKGH  195 (273)
Q Consensus       158 ~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~  195 (273)
                      +|.++..+|++++|+++|++++........                                          ........
T Consensus       201 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  280 (311)
T 3nf1_A          201 LASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTT  280 (311)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHH
Confidence            999999999999999999999754222100                                          01223456


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 024043          196 LLNAGICQLCKGDVVAITNALERYQD  221 (273)
Q Consensus       196 ~~~~gl~~l~~gd~~~A~~~~~~~~~  221 (273)
                      +..+|.++...|++++|...+++...
T Consensus       281 ~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          281 LKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            77788899999999999988887643

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.79  E-value=7.5e-17  Score=123.18  Aligned_cols=155  Identities=11%  Similarity=0.082  Sum_probs=145.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc
Q 024043           27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI  105 (273)
Q Consensus        27 ~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~  105 (273)
                      +|...-+..+...|.+|...|++++|+.++.++.++..+.+++...+.++..+|.++... ++++|+.++++++.++...
T Consensus         3 ~d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~   82 (164)
T 3ro3_A            3 GSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL   82 (164)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            466677788889999999999999999999999999999999999999999999999887 9999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 024043          106 GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ  181 (273)
Q Consensus       106 g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~  181 (273)
                      +++...+.++.++|.++...|++++|+.++++++++.+..+++.....++..+|.++...|++++|++++++++..
T Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  158 (164)
T 3ro3_A           83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  158 (164)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998887788899999999999999999999999998743

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.77  E-value=1.3e-16  Score=127.52  Aligned_cols=151  Identities=11%  Similarity=0.068  Sum_probs=141.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcC-Ch
Q 024043           31 DAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIG-RL  108 (273)
Q Consensus        31 ~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g-~~  108 (273)
                      .....+...|.++...|++++|..+|.++..+.++.+++...+.++.++|.+|... ++++|+.++++++.++...+ ++
T Consensus        24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  103 (203)
T 3gw4_A           24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP  103 (203)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence            34556777899999999999999999999999999999999999999999999888 99999999999999999999 56


Q ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 024043          109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ  181 (273)
Q Consensus       109 ~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~  181 (273)
                      ...+.++.++|.++...|++++|+.++++|+++.+..+++.....++..+|.++...|++++|+.++++++..
T Consensus       104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  176 (203)
T 3gw4_A          104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI  176 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999998888778888999999999999999999999999743

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.77  E-value=1.8e-16  Score=134.32  Aligned_cols=197  Identities=11%  Similarity=0.069  Sum_probs=168.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHH
Q 024043           26 GSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLE--SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMF  102 (273)
Q Consensus        26 ~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~  102 (273)
                      +++...-+..+...|.++...|++++|+.+|.++..+..+.+  +....+.++..+|.+|... ++++|+.+|++++.++
T Consensus        20 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~   99 (311)
T 3nf1_A           20 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR   99 (311)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            456677788888999999999999999999999999998776  6677889999999999887 9999999999999999


Q ss_pred             Hhc--CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc--CCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 024043          103 CDI--GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE--EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI  178 (273)
Q Consensus       103 ~~~--g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~--~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~  178 (273)
                      ...  ++....+.++..+|.++...|++++|+.+|++++++++..  ++......++..+|.++...|++++|+++|+++
T Consensus       100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  179 (311)
T 3nf1_A          100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA  179 (311)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            887  7788899999999999999999999999999999999776  455666788999999999999999999999999


Q ss_pred             HHHHhccc-hhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043          179 ARQSLNNN-LLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDI  222 (273)
Q Consensus       179 ~~~~~~~~-~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~l  222 (273)
                      +....... .........+..++.++...|++.+|...+++...+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  224 (311)
T 3nf1_A          180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR  224 (311)
T ss_dssp             HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            75422110 001233456778899999999999999999987644

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.75  E-value=8.2e-16  Score=122.77  Aligned_cols=192  Identities=14%  Similarity=0.108  Sum_probs=152.6

Q ss_pred             cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh
Q 024043           46 AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES  124 (273)
Q Consensus        46 ~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~  124 (273)
                      .|++++|...+...      .+++...+.++..+|.++... ++++|+.++++++.++...++....+.++.++|.++..
T Consensus         5 ~g~~~~A~~~~~~~------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~   78 (203)
T 3gw4_A            5 AHDYALAERQAQAL------LAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM   78 (203)
T ss_dssp             --CHHHHHHHHHHH------HTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHh------cCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            56666666633222      235556788999999999877 99999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHhccC-CcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHH
Q 024043          125 EHNIEQTIVFFEKAADMFQNEE-VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQ  203 (273)
Q Consensus       125 ~g~~~~A~~~y~~Al~~~~~~~-~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~  203 (273)
                      .|++++|+.++++|+++++..+ ++.....++..+|.++..+|++++|+.++++++....... ........+..+|.++
T Consensus        79 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~  157 (203)
T 3gw4_A           79 AGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD-DQVAIACAFRGLGDLA  157 (203)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHH
Confidence            9999999999999999999888 4447788999999999999999999999999974432221 1233445667889999


Q ss_pred             HhcCCHHHHHHHHHHHHHHHHHHhhcCHhHHHHHHHhhhccCC
Q 024043          204 LCKGDVVAITNALERYQDIAASMDEEDIAKFTDVVKEFDSMTP  246 (273)
Q Consensus       204 l~~gd~~~A~~~~~~~~~ll~a~~~~d~~~~~~~~~~~~~~~~  246 (273)
                      ...|++.+|..++++...+..  ..++......+......+.+
T Consensus       158 ~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~~~~~~~  198 (203)
T 3gw4_A          158 QQEKNLLEAQQHWLRARDIFA--ELEDSEAVNELMTRLNGLEH  198 (203)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCC
T ss_pred             HHCcCHHHHHHHHHHHHHHHH--HcCCHHHHHHHHhcccchhh
Confidence            999999999999999876654  34666655555555544444

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.75  E-value=1.7e-16  Score=135.35  Aligned_cols=193  Identities=12%  Similarity=-0.018  Sum_probs=158.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHH
Q 024043           35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAAR  113 (273)
Q Consensus        35 ~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~  113 (273)
                      .+...+..+...|+|++|.+.+.++++......+.......+..+|.++... ++++|+.+|++|+.+.....+....+.
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            3445577888899999999999999887554444445566677789998777 999999999999999888888888999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCccc-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhch
Q 024043          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTS-ANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGV  192 (273)
Q Consensus       114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~-~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~  192 (273)
                      ++.++|.+|...|++++|+.+|++|+++++....... ...++.++|.++..+|+|++|+++|++++....... ..+..
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~-~~~~~  235 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN-SMALI  235 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-BCSSH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC-cHHHH
Confidence            9999999999999999999999999999887654332 337899999999999999999999999975543221 12345


Q ss_pred             hhHHHHHHHHHHhcCCHHHH-HHHHHHHHHHHHHHhh
Q 024043          193 KGHLLNAGICQLCKGDVVAI-TNALERYQDIAASMDE  228 (273)
Q Consensus       193 ~~~~~~~gl~~l~~gd~~~A-~~~~~~~~~ll~a~~~  228 (273)
                      ...++++|.++...|++++| ..++++...+.+.+..
T Consensus       236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~  272 (293)
T 2qfc_A          236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM  272 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCc
Confidence            66788999999999999999 8889988777665533

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.75  E-value=2.3e-16  Score=134.57  Aligned_cols=194  Identities=12%  Similarity=0.004  Sum_probs=159.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHH
Q 024043           33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMA  111 (273)
Q Consensus        33 ~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~  111 (273)
                      ...+......+...|++++|...+.++........+....+..+..+|.++... ++++|+.+|++|+.+....++....
T Consensus        75 ~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~  154 (293)
T 3u3w_A           75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN  154 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHH
Confidence            344445567778899999999999999875432222333355667789999777 9999999999999988888888899


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-CCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhh
Q 024043          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY  190 (273)
Q Consensus       112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~-~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~  190 (273)
                      +.++.++|.+|...|++++|+.+|++|+++++.. ++......++.++|.++..+|+|++|++++++++....... ..+
T Consensus       155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~-~~~  233 (293)
T 3u3w_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN-SMA  233 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-BCT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC-cHH
Confidence            9999999999999999999999999999999887 55667778999999999999999999999999975543332 133


Q ss_pred             chhhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHh
Q 024043          191 GVKGHLLNAGICQLCKG-DVVAITNALERYQDIAASMD  227 (273)
Q Consensus       191 ~~~~~~~~~gl~~l~~g-d~~~A~~~~~~~~~ll~a~~  227 (273)
                      .....++++|.++...| ++++|...+++...+.+...
T Consensus       234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~  271 (293)
T 3u3w_A          234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILE  271 (293)
T ss_dssp             THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence            45678889999999999 56999999999887776543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.74  E-value=5.3e-15  Score=121.87  Aligned_cols=200  Identities=10%  Similarity=0.122  Sum_probs=145.4

Q ss_pred             hhHHHHHHHHHHhhccccCCCCCHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHHHHHHHHHcC-CHHH
Q 024043            6 ARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKA-------------ANSFKLAKSWDKAGATYVKLANCHLKLE-SKHE   71 (273)
Q Consensus         6 ~~a~~l~~~Aek~~k~~~~~~~~~~~A~~~~~~a-------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~   71 (273)
                      ++|+.+...|.-.++     .++|++|..+|.++             |.++...|++++|+.+|.+++.+....+ +...
T Consensus         3 ~~a~~~~~~g~~~~~-----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~   77 (258)
T 3uq3_A            3 SMADKEKAEGNKFYK-----ARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKV   77 (258)
T ss_dssp             HHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             hHHHHHHHHHHHHHH-----hccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHH
Confidence            345555555555444     24667777666654             6678888889999999999888887664 5556


Q ss_pred             HHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHH------hcC--------------ChhHHHHHHHHHHHHHHhcCCHHH
Q 024043           72 AAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFC------DIG--------------RLSMAARYYKEIAELYESEHNIEQ  130 (273)
Q Consensus        72 aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~------~~g--------------~~~~~a~~l~~lg~~~~~~g~~~~  130 (273)
                      .+.++..+|.++... ++++|+.+|++++.+..      ..|              .....+.++..+|.++...|++++
T Consensus        78 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (258)
T 3uq3_A           78 ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPN  157 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHH
Confidence            678888888888777 88888888888887421      111              234456778888888888888888


Q ss_pred             HHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHH
Q 024043          131 TIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVV  210 (273)
Q Consensus       131 A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~  210 (273)
                      |+.+|++++++.+..      ..++..+|.++...|++++|+.+|++++...+.+       ...+..+|.++...|++.
T Consensus       158 A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~l~~~~~~~g~~~  224 (258)
T 3uq3_A          158 AVKAYTEMIKRAPED------ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF-------VRAYIRKATAQIAVKEYA  224 (258)
T ss_dssp             HHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhcCccc------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH-------HHHHHHHHHHHHHHhhHH
Confidence            888888888875432      3678888888888888888888888887644332       235677788888888888


Q ss_pred             HHHHHHHHHHHHH
Q 024043          211 AITNALERYQDIA  223 (273)
Q Consensus       211 ~A~~~~~~~~~ll  223 (273)
                      .|...+++...+-
T Consensus       225 ~A~~~~~~a~~~~  237 (258)
T 3uq3_A          225 SALETLDAARTKD  237 (258)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC
Confidence            8888888775544

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.73  E-value=1.5e-15  Score=125.20  Aligned_cols=216  Identities=13%  Similarity=0.157  Sum_probs=167.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcC-Chh
Q 024043           32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIG-RLS  109 (273)
Q Consensus        32 A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g-~~~  109 (273)
                      .++.+...|.++...|++++|+.+|.+++...   .+    ..++..+|.++... ++++|+.++++++.+.+..+ +..
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~   76 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH---KD----ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK   76 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---cc----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH
Confidence            45677788999999999999999999999886   32    46888999999887 99999999999999998875 666


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC--------------------CcccHHHHHHHHHHHHHHhcCHH
Q 024043          110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE--------------------VTTSANQCKQKVAQYAAELEQYH  169 (273)
Q Consensus       110 ~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~--------------------~~~~~~~~~~~~a~~~~~~g~y~  169 (273)
                      ..+.++..+|.++...|++++|+.+|++++.+.....                    .......++..+|.++...|+++
T Consensus        77 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (258)
T 3uq3_A           77 VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP  156 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH
Confidence            6689999999999999999999999999999543210                    22345678999999999999999


Q ss_pred             HHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHH---------HHHHhhcCHhHHHHHHHh
Q 024043          170 KSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDI---------AASMDEEDIAKFTDVVKE  240 (273)
Q Consensus       170 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~l---------l~a~~~~d~~~~~~~~~~  240 (273)
                      +|+.+|++++...+.+       ...+..+|.++...|++..|...+++...+         .-+........+.+++..
T Consensus       157 ~A~~~~~~a~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  229 (258)
T 3uq3_A          157 NAVKAYTEMIKRAPED-------ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALET  229 (258)
T ss_dssp             HHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhcCccc-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            9999999998655443       246778899999999999999999986511         001111112345556666


Q ss_pred             hhccCCCc------hhHHHHHHHHHHh
Q 024043          241 FDSMTPLD------PWKTTLLLRVKEK  261 (273)
Q Consensus       241 ~~~~~~ld------~~~~~~l~~~~~~  261 (273)
                      |..+..++      |....++..+.+.
T Consensus       230 ~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          230 LDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             HHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             HHHHHHhChhhcCCCchHHHHHHHHHh
Confidence            66666666      6666666555543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.73  E-value=4e-16  Score=133.05  Aligned_cols=148  Identities=12%  Similarity=0.032  Sum_probs=135.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc-CChhH
Q 024043           33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI-GRLSM  110 (273)
Q Consensus        33 ~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~-g~~~~  110 (273)
                      ..++...|.++...+++++|+.+|.+++.+....+++...+.++.++|.+|... ++++|+.+|++|+.++... ++...
T Consensus       115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~  194 (293)
T 3u3w_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF  194 (293)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhH
Confidence            445555677888888999999999999998777778788899999999999888 9999999999999999988 78899


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Q 024043          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE-QYHKSIEIYEEIAR  180 (273)
Q Consensus       111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g-~y~~A~~~~~~~~~  180 (273)
                      .+.++.++|.+|..+|+|++|+.++++|+++.+..++....+.++..+|.++..+| .+++|+++|++++.
T Consensus       195 ~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998888888899999999999999 57999999999963

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.73  E-value=1.1e-15  Score=116.60  Aligned_cols=157  Identities=13%  Similarity=0.099  Sum_probs=137.0

Q ss_pred             cCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043           66 LESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (273)
Q Consensus        66 ~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~  144 (273)
                      .+++...+.++..+|.++... ++++|+.++++++.+....++....+.++..+|.++...|++++|+.++++|+++++.
T Consensus         2 ~~d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   81 (164)
T 3ro3_A            2 PGSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ   81 (164)
T ss_dssp             --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            578889999999999999877 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 024043          145 EEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDIA  223 (273)
Q Consensus       145 ~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll  223 (273)
                      .+++.....++..+|.++...|++++|++++++++....... ........+..++.++...|++..|...+++...+.
T Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  159 (164)
T 3ro3_A           82 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK-DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS  159 (164)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             hCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcc-chHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            888777788999999999999999999999999975432221 123345567788999999999999999999875543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.72  E-value=2.4e-15  Score=125.27  Aligned_cols=218  Identities=12%  Similarity=0.030  Sum_probs=157.9

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc--CChhHHHHHHHHHH
Q 024043           45 LAKSWDKAGATYVKLANCHLKLE--SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI--GRLSMAARYYKEIA  119 (273)
Q Consensus        45 ~~~~~~~A~~~~~~a~~~~~~~~--~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~--g~~~~~a~~l~~lg  119 (273)
                      ..|++++|+..|.+|++++.+..  +....+.++..+|.+|... ++++|+.+|++++.+....  ++....+.++.++|
T Consensus        13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~   92 (283)
T 3edt_B           13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA   92 (283)
T ss_dssp             CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            35666677777777777776543  4467788999999999887 9999999999999999887  77888999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc-chhhhchhhHH
Q 024043          120 ELYESEHNIEQTIVFFEKAADMFQNEEV--TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN-NLLKYGVKGHL  196 (273)
Q Consensus       120 ~~~~~~g~~~~A~~~y~~Al~~~~~~~~--~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~-~~~~~~~~~~~  196 (273)
                      .++...|++++|+.+|++|+++++....  ......++..+|.++..+|++++|+.+|++++...... ..........+
T Consensus        93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  172 (283)
T 3edt_B           93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK  172 (283)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            9999999999999999999999877532  35567889999999999999999999999997542110 00012344567


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh------------------------cCHhHHHHHHHhhhccCCCchhHH
Q 024043          197 LNAGICQLCKGDVVAITNALERYQDIAASMDE------------------------EDIAKFTDVVKEFDSMTPLDPWKT  252 (273)
Q Consensus       197 ~~~gl~~l~~gd~~~A~~~~~~~~~ll~a~~~------------------------~d~~~~~~~~~~~~~~~~ld~~~~  252 (273)
                      ..+|.++...|++.+|...+++...+......                        .....+..+...+..+...+|...
T Consensus       173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (283)
T 3edt_B          173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN  252 (283)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence            78899999999999999999987654332111                        112234445555555555566666


Q ss_pred             HHHHHHHHhc
Q 024043          253 TLLLRVKEKL  262 (273)
Q Consensus       253 ~~l~~~~~~~  262 (273)
                      ..+..+...+
T Consensus       253 ~~~~~la~~~  262 (283)
T 3edt_B          253 TTLRSLGALY  262 (283)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555555444

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.70  E-value=1.4e-15  Score=129.70  Aligned_cols=142  Identities=13%  Similarity=0.035  Sum_probs=126.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhH-HHHHHH
Q 024043           39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM-AARYYK  116 (273)
Q Consensus        39 a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~-~a~~l~  116 (273)
                      .|.++...|++++|+.+|.+++.+..+..++...+.++.++|.+|... ++++|+.+|++|+.++...++... .+.++.
T Consensus       121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~  200 (293)
T 2qfc_A          121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY  200 (293)
T ss_dssp             HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence            456677889999999999999988877777777899999999999888 999999999999999988765444 448999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHH
Q 024043          117 EIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS-IEIYEEIAR  180 (273)
Q Consensus       117 ~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A-~~~~~~~~~  180 (273)
                      ++|.+|..+|+|++|+.+|++|+++....++....+.++.++|.++..+|++++| ..+|++++.
T Consensus       201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            9999999999999999999999999987777777789999999999999999999 778999863

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.69  E-value=4.4e-14  Score=123.79  Aligned_cols=184  Identities=10%  Similarity=-0.006  Sum_probs=147.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCCh--hH
Q 024043           34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL--SM  110 (273)
Q Consensus        34 ~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~--~~  110 (273)
                      ..+...|.++...|++++|...+.++..+....+++...+.++..+|.++... ++++|+.++++++.+....++.  ..
T Consensus        54 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~  133 (373)
T 1hz4_A           54 VATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM  133 (373)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcH
Confidence            34455678889999999999999999999999999999999999999999877 9999999999999999998876  67


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhh
Q 024043          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY  190 (273)
Q Consensus       111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~  190 (273)
                      .+.++.++|.++...|++++|..++++++++.+..+.+. ...++..+|.++...|++++|..+++++............
T Consensus       134 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~  212 (373)
T 1hz4_A          134 HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSD  212 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchh
Confidence            888999999999999999999999999999998877654 4578899999999999999999999998644222110000


Q ss_pred             chhhHHHHHHHHHHhcCCHHHHHHHHHH
Q 024043          191 GVKGHLLNAGICQLCKGDVVAITNALER  218 (273)
Q Consensus       191 ~~~~~~~~~gl~~l~~gd~~~A~~~~~~  218 (273)
                      .........+.+++..|++..|...+++
T Consensus       213 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~  240 (373)
T 1hz4_A          213 WISNANKVRVIYWQMTGDKAAAANWLRH  240 (373)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            0000001122335567777777666554

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.68  E-value=1.3e-15  Score=124.44  Aligned_cols=166  Identities=14%  Similarity=0.124  Sum_probs=115.9

Q ss_pred             CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-c------
Q 024043           27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYK-K------   85 (273)
Q Consensus        27 ~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~-~------   85 (273)
                      |++++|...|.++              |.++...|++++|+.+|.+++++...      -..++..+|.++. .      
T Consensus        19 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~~~~~~~~   92 (217)
T 2pl2_A           19 GRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR------YLGGYMVLSEAYVALYRQAED   92 (217)
T ss_dssp             TCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHTCSS
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHhhhhhhh
Confidence            4666666666654              67888889999999999998887422      2345667777763 3      


Q ss_pred             -----cCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHH
Q 024043           86 -----TSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQ  160 (273)
Q Consensus        86 -----~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~  160 (273)
                           .++++|+.+|++++.+.+..      +.++.++|.++...|++++|+.+|++|+++.   ++    ..++..+|.
T Consensus        93 ~~~~~g~~~~A~~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~----~~~~~~la~  159 (217)
T 2pl2_A           93 RERGKGYLEQALSVLKDAERVNPRY------APLHLQRGLVYALLGERDKAEASLKQALALE---DT----PEIRSALAE  159 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CC----HHHHHHHHH
T ss_pred             hcccccCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc---cc----hHHHHHHHH
Confidence                 47888999999998875432      3578889999999999999999999999886   11    356888999


Q ss_pred             HHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHH
Q 024043          161 YAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER  218 (273)
Q Consensus       161 ~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~  218 (273)
                      ++..+|++++|+..|++++...++++       ..+.+++.++...|++++|...+++
T Consensus       160 ~~~~~g~~~~A~~~~~~al~~~P~~~-------~~~~~la~~~~~~g~~~~A~~~~~~  210 (217)
T 2pl2_A          160 LYLSMGRLDEALAQYAKALEQAPKDL-------DLRVRYASALLLKGKAEEAARAAAL  210 (217)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSTTCH-------HHHHHHHHHHTC-------------
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCh-------HHHHHHHHHHHHccCHHHHHHHHHH
Confidence            99999999999999999887655542       3566778888888988888877765

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.68  E-value=3.4e-15  Score=117.86  Aligned_cols=164  Identities=14%  Similarity=0.118  Sum_probs=140.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhH
Q 024043           32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM  110 (273)
Q Consensus        32 A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~  110 (273)
                      -...|...|.+|...|++++|+.+|++++++...      -..++..+|.+|... ++++|+.++.+++......     
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~-----   72 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN------NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS-----   72 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-----
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh-----
Confidence            3567889999999999999999999999988432      246788999999888 9999999999998765433     


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhh
Q 024043          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY  190 (273)
Q Consensus       111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~  190 (273)
                       ..++..+|.++...++++.|+..+.+|+.+.+..      ..++..+|.++..+|+|++|++.|++++...+.+     
T Consensus        73 -~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~------~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~-----  140 (184)
T 3vtx_A           73 -AEAYYILGSANFMIDEKQAAIDALQRAIALNTVY------ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF-----  140 (184)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh-----
Confidence             4578899999999999999999999999886432      3678899999999999999999999998765543     


Q ss_pred             chhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          191 GVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       191 ~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                        ...+.++|.++...|++++|..++++..
T Consensus       141 --~~~~~~lg~~~~~~g~~~~A~~~~~~al  168 (184)
T 3vtx_A          141 --IRAYQSIGLAYEGKGLRDEAVKYFKKAL  168 (184)
T ss_dssp             --HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             --hhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence              2467889999999999999999998863

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.67  E-value=1.5e-15  Score=144.92  Aligned_cols=166  Identities=14%  Similarity=0.168  Sum_probs=143.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHH
Q 024043           33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMA  111 (273)
Q Consensus        33 ~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~  111 (273)
                      ++.+...|.+|...|++++|+.+|++|+++...      -+.++.++|.+|... ++++|+.+|++|+++....      
T Consensus         9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~------~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~------   76 (723)
T 4gyw_A            9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE------FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF------   76 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------
Confidence            456778899999999999999999999988532      256899999999888 9999999999999986443      


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhc
Q 024043          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG  191 (273)
Q Consensus       112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~  191 (273)
                      +.++.++|.++..+|++++|+++|++|+++...      ...++.++|.++..+|++++|++.|++++...+++      
T Consensus        77 ~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~------~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~------  144 (723)
T 4gyw_A           77 ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA------FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF------  144 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------
Confidence            568999999999999999999999999998542      24789999999999999999999999998765554      


Q ss_pred             hhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 024043          192 VKGHLLNAGICQLCKGDVVAITNALERYQDIA  223 (273)
Q Consensus       192 ~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll  223 (273)
                       ...+.++|.++...|++.+|.+.+++...+.
T Consensus       145 -~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~  175 (723)
T 4gyw_A          145 -PDAYCNLAHCLQIVCDWTDYDERMKKLVSIV  175 (723)
T ss_dssp             -HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred             -hHHHhhhhhHHHhcccHHHHHHHHHHHHHhC
Confidence             3467889999999999999999999876544

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.66  E-value=2.7e-15  Score=130.88  Aligned_cols=177  Identities=9%  Similarity=0.020  Sum_probs=100.7

Q ss_pred             CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHH
Q 024043           27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA   91 (273)
Q Consensus        27 ~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA   91 (273)
                      +++++|..+|.++              |.+|...|++++|+.+|.+++.+...      ...++..+|.+|... ++++|
T Consensus        79 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A  152 (365)
T 4eqf_A           79 GDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN------NLKALMALAVSYTNTSHQQDA  152 (365)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHccccHHHH
Confidence            4666666666654              56677777888888888877766321      145677777777666 77777


Q ss_pred             HHHHHHHHHHHHhcCChh----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcC
Q 024043           92 ISCLEQAVNMFCDIGRLS----MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQ  167 (273)
Q Consensus        92 ~~~~~~Al~~~~~~g~~~----~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~  167 (273)
                      +.+|++++.+.+......    +.+..+..+|.++...|++++|+.+|++++++.+...    ...++..+|.++...|+
T Consensus       153 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~~l~~~~~~~g~  228 (365)
T 4eqf_A          153 CEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI----DPDLQTGLGVLFHLSGE  228 (365)
T ss_dssp             HHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSC----CHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCcc----CHHHHHHHHHHHHHCCC
Confidence            777777777665543322    2234445556666666666666666666666543211    13456666666666666


Q ss_pred             HHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          168 YHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       168 y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      +++|+.+|++++...+.+       ...+.++|.++...|++.+|...+++..
T Consensus       229 ~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al  274 (365)
T 4eqf_A          229 FNRAIDAFNAALTVRPED-------YSLWNRLGATLANGDRSEEAVEAYTRAL  274 (365)
T ss_dssp             HHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            666666666665443332       1245556666666666666666666543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.64  E-value=9.3e-14  Score=121.68  Aligned_cols=186  Identities=11%  Similarity=-0.035  Sum_probs=157.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhH
Q 024043           32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM  110 (273)
Q Consensus        32 A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~  110 (273)
                      ..+.....|.++...|++++|...+.+++... ..+++...+.++..+|.++... ++++|+.++++++.+.+..|++..
T Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   91 (373)
T 1hz4_A           13 HAEFNALRAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY   91 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHH
Confidence            34555566888889999999999999999876 3445666778889999999766 999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCc--ccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchh
Q 024043          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT--TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLL  188 (273)
Q Consensus       111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~--~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~  188 (273)
                      .+.++.++|.++...|++++|+.+|++++++.+..+.+  .....++..+|.++...|++++|..++++++........ 
T Consensus        92 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-  170 (373)
T 1hz4_A           92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP-  170 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG-
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc-
Confidence            99999999999999999999999999999999987664  456678899999999999999999999999765443211 


Q ss_pred             hhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          189 KYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       189 ~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      .. ....+..++.++...|++.+|...+++..
T Consensus       171 ~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~  201 (373)
T 1hz4_A          171 QQ-QLQCLAMLIQCSLARGDLDNARSQLNRLE  201 (373)
T ss_dssp             GG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            11 23456778899999999999999888764

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.64  E-value=1.1e-14  Score=127.02  Aligned_cols=201  Identities=11%  Similarity=0.050  Sum_probs=152.1

Q ss_pred             HhhHHHHHHHHHHhhcc----c-----cCCC-CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHH
Q 024043            5 IARAEEFEKKAEKKLNG----W-----GLFG-SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLA   60 (273)
Q Consensus         5 ~~~a~~l~~~Aek~~k~----~-----~~~~-~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~   60 (273)
                      .++|.++++++-+.-..    +     .++. +++++|..+|.++              |.+|...|++++|+.+|.+++
T Consensus        81 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  160 (365)
T 4eqf_A           81 LPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWI  160 (365)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence            56788888888765431    1     1223 8999999999876              678999999999999999999


Q ss_pred             HHHHHcCCHH----HHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 024043           61 NCHLKLESKH----EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFF  135 (273)
Q Consensus        61 ~~~~~~~~~~----~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y  135 (273)
                      .+........    +.+..+..+|.++... ++++|+.+|++++.+.....+    +.++.++|.++...|++++|+.+|
T Consensus       161 ~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~~l~~~~~~~g~~~~A~~~~  236 (365)
T 4eqf_A          161 KQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID----PDLQTGLGVLFHLSGEFNRAIDAF  236 (365)
T ss_dssp             HHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCC----HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC----HHHHHHHHHHHHHCCCHHHHHHHH
Confidence            9876433221    3456667789999888 999999999999998654322    458899999999999999999999


Q ss_pred             HHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHH
Q 024043          136 EKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNA  215 (273)
Q Consensus       136 ~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~  215 (273)
                      ++++++.+..      ..++..+|.++...|++++|+.+|++++...+++       ...+.++|.++...|++.+|...
T Consensus       237 ~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~  303 (365)
T 4eqf_A          237 NAALTVRPED------YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF-------IRSRYNLGISCINLGAYREAVSN  303 (365)
T ss_dssp             HHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCCHHHHHH
T ss_pred             HHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-------hHHHHHHHHHHHHCCCHHHHHHH
Confidence            9999986432      4689999999999999999999999998664443       34678889999999999999999


Q ss_pred             HHHHHHH
Q 024043          216 LERYQDI  222 (273)
Q Consensus       216 ~~~~~~l  222 (273)
                      +++...+
T Consensus       304 ~~~al~~  310 (365)
T 4eqf_A          304 FLTALSL  310 (365)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9987644

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.64  E-value=7.9e-15  Score=119.71  Aligned_cols=160  Identities=12%  Similarity=-0.018  Sum_probs=136.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHH
Q 024043           35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAAR  113 (273)
Q Consensus        35 ~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~  113 (273)
                      .+...|.++...|++++|+..|.+++.....      -..++..+|.++... ++++|+.+|++++.+.+..      +.
T Consensus         7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~------~~   74 (217)
T 2pl2_A            7 NPLRLGVQLYALGRYDAALTLFERALKENPQ------DPEALYWLARTQLKLGLVNPALENGKTLVARTPRY------LG   74 (217)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HH
Confidence            4556799999999999999999999876422      246788999999877 9999999999999986543      45


Q ss_pred             HHHHHHHHHHhc-----------CCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 024043          114 YYKEIAELYESE-----------HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS  182 (273)
Q Consensus       114 ~l~~lg~~~~~~-----------g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~  182 (273)
                      ++.++|.++...           |++++|+..|++|+++.+.      ...++..+|.++..+|++++|+..|++++...
T Consensus        75 a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  148 (217)
T 2pl2_A           75 GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR------YAPLHLQRGLVYALLGERDKAEASLKQALALE  148 (217)
T ss_dssp             HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence            889999999999           9999999999999998543      24678999999999999999999999998655


Q ss_pred             hccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          183 LNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       183 ~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                       ++       ...++++|.++...|++++|...+++..
T Consensus       149 -~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al  178 (217)
T 2pl2_A          149 -DT-------PEIRSALAELYLSMGRLDEALAQYAKAL  178 (217)
T ss_dssp             -CC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             -cc-------hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence             33       2467889999999999999999999865

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.63  E-value=5.7e-14  Score=119.84  Aligned_cols=240  Identities=11%  Similarity=0.030  Sum_probs=177.5

Q ss_pred             HhhHHHHHHHHHHhhc-cc--------cCCC-CCHHHHHHHHHHH--------------HHHHHHcC-CHHHHHHHHHHH
Q 024043            5 IARAEEFEKKAEKKLN-GW--------GLFG-SKYEDAADLFDKA--------------ANSFKLAK-SWDKAGATYVKL   59 (273)
Q Consensus         5 ~~~a~~l~~~Aek~~k-~~--------~~~~-~~~~~A~~~~~~a--------------~~~~~~~~-~~~~A~~~~~~a   59 (273)
                      .++|.+++.++-+.-. ..        .++. +++++|..++.++              |.++...| ++++|+.+|.++
T Consensus        38 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a  117 (330)
T 3hym_B           38 FKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKA  117 (330)
T ss_dssp             HHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            5677777777765443 11        0123 7888888888765              56778888 899999999998


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043           60 ANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKA  138 (273)
Q Consensus        60 ~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~A  138 (273)
                      +.+....      ..++..+|.++... ++++|+.+|++++.+.....      ..+..+|.++...|++++|+.+|+++
T Consensus       118 ~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~a  185 (330)
T 3hym_B          118 TTLEKTY------GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCH------LPMLYIGLEYGLTNNSKLAERFFSQA  185 (330)
T ss_dssp             HTTCTTC------THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCS------HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHhCCcc------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccH------HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            8764322      34678889998777 99999999999998876543      36777999999999999999999999


Q ss_pred             HHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccc--hhhhchhhHHHHHHHHHHhcCCHHHHHHHH
Q 024043          139 ADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNN--LLKYGVKGHLLNAGICQLCKGDVVAITNAL  216 (273)
Q Consensus       139 l~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~  216 (273)
                      +++.+..      ..++..+|.++...|++++|+.+|++++.......  .........+..+|.++...|+++.|...+
T Consensus       186 l~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  259 (330)
T 3hym_B          186 LSIAPED------PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH  259 (330)
T ss_dssp             HTTCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHhCCCC------hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            9886432      46789999999999999999999999986543211  111122357788999999999999999999


Q ss_pred             HHHHHH-------H--HHHhhcCHhHHHHHHHhhhccCCCchhHHHHHHHHHHhc
Q 024043          217 ERYQDI-------A--ASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKL  262 (273)
Q Consensus       217 ~~~~~l-------l--~a~~~~d~~~~~~~~~~~~~~~~ld~~~~~~l~~~~~~~  262 (273)
                      ++...+       .  -+........+.+++..|..+..++|-....+..+...+
T Consensus       260 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  314 (330)
T 3hym_B          260 RQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI  314 (330)
T ss_dssp             HHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred             HHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence            986511       0  011112244577888888888888887776666666655

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.62  E-value=2.6e-14  Score=125.84  Aligned_cols=237  Identities=15%  Similarity=0.170  Sum_probs=131.5

Q ss_pred             HhhHHHHHHHHHHhhccc---------cCCC-CCHHHHHHHHHH--------------HHHHHHHcCCHHHHHHHHHHHH
Q 024043            5 IARAEEFEKKAEKKLNGW---------GLFG-SKYEDAADLFDK--------------AANSFKLAKSWDKAGATYVKLA   60 (273)
Q Consensus         5 ~~~a~~l~~~Aek~~k~~---------~~~~-~~~~~A~~~~~~--------------a~~~~~~~~~~~~A~~~~~~a~   60 (273)
                      .++|.+++++|-+.-...         .++. |++++|...|.+              .|.++...|++++|..+|.+++
T Consensus        83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  162 (388)
T 1w3b_A           83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI  162 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            456666666665532210         1122 666777666654              3667777777777777777766


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc--------------CChhH--------------H
Q 024043           61 NCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI--------------GRLSM--------------A  111 (273)
Q Consensus        61 ~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~--------------g~~~~--------------~  111 (273)
                      ....      ..+.++.++|.++... ++++|+.+|++++.+.+..              |++..              .
T Consensus       163 ~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~  236 (388)
T 1w3b_A          163 ETQP------NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH  236 (388)
T ss_dssp             HHCT------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC
T ss_pred             HhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC
Confidence            5421      1123444555555444 5555555555554432111              11111              1


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhc
Q 024043          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG  191 (273)
Q Consensus       112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~  191 (273)
                      ..++.++|.++...|++++|+.+|++++++.+.      ...++..+|.++...|++++|+++|++++...+.+      
T Consensus       237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------  304 (388)
T 1w3b_A          237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH------FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH------  304 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS------CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc------
Confidence            345566666666667777777777766665321      12456667777777777777777777776543332      


Q ss_pred             hhhHHHHHHHHHHhcCCHHHHHHHHHHHH-----------HHHHHHhhcCHhHHHHHHHhhhccCCCchhHHHHHHHHHH
Q 024043          192 VKGHLLNAGICQLCKGDVVAITNALERYQ-----------DIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKE  260 (273)
Q Consensus       192 ~~~~~~~~gl~~l~~gd~~~A~~~~~~~~-----------~ll~a~~~~d~~~~~~~~~~~~~~~~ld~~~~~~l~~~~~  260 (273)
                       ...+..++.++...|++++|...+++..           .+...+  .....+.+++..|..+..++|.....+..+..
T Consensus       305 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~  381 (388)
T 1w3b_A          305 -ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL--QQQGKLQEALMHYKEAIRISPTFADAYSNMGN  381 (388)
T ss_dssp             -HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH--HTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHH
Confidence             2345566667777777777777766643           111111  12334556666666666677766666665554


Q ss_pred             hc
Q 024043          261 KL  262 (273)
Q Consensus       261 ~~  262 (273)
                      .+
T Consensus       382 ~~  383 (388)
T 1w3b_A          382 TL  383 (388)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.61  E-value=8.9e-15  Score=122.02  Aligned_cols=211  Identities=14%  Similarity=0.101  Sum_probs=149.0

Q ss_pred             CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHH
Q 024043           27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA   91 (273)
Q Consensus        27 ~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA   91 (273)
                      +++++|...|.++              |.+|...|++++|+.+|.+++..   .+++...+.++..+|.++... ++++|
T Consensus        17 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~lg~~~~~~~~~~~A   93 (272)
T 3u4t_A           17 NNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK---VNATKAKSADFEYYGKILMKKGQDSLA   93 (272)
T ss_dssp             TCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT---SCTTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---cCchhHHHHHHHHHHHHHHHcccHHHH
Confidence            4667777766654              67888999999999999999872   244444577788999999877 99999


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHH
Q 024043           92 ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS  171 (273)
Q Consensus        92 ~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A  171 (273)
                      +.+|++++.+.....      .++..+|.++...|++++|+.+|++++++.+      ....++..+|......+++++|
T Consensus        94 ~~~~~~a~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~l~~~~~~~~~~~~A  161 (272)
T 3u4t_A           94 IQQYQAAVDRDTTRL------DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT------TDPKVFYELGQAYYYNKEYVKA  161 (272)
T ss_dssp             HHHHHHHHHHSTTCT------HHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC------CCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHhcCcccH------HHHHHHHHHHHHccCHHHHHHHHHHHhhcCC------CcHHHHHHHHHHHHHHHHHHHH
Confidence            999999998765443      4889999999999999999999999988722      2246788889444445599999


Q ss_pred             HHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHh-----------------hcCH
Q 024043          172 IEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGD---VVAITNALERYQDIAASMD-----------------EEDI  231 (273)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd---~~~A~~~~~~~~~ll~a~~-----------------~~d~  231 (273)
                      +++|++++...+.+       ...+..+|.++...|+   +..|...+++...+.....                 ....
T Consensus       162 ~~~~~~a~~~~p~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  234 (272)
T 3u4t_A          162 DSSFVKVLELKPNI-------YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN  234 (272)
T ss_dssp             HHHHHHHHHHSTTC-------HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCccc-------hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc
Confidence            99999998655443       2345667777777777   6667777776554331110                 0112


Q ss_pred             hHHHHHHHhhhccCCCchhHHHHHHHHH
Q 024043          232 AKFTDVVKEFDSMTPLDPWKTTLLLRVK  259 (273)
Q Consensus       232 ~~~~~~~~~~~~~~~ld~~~~~~l~~~~  259 (273)
                      ..+.+++..|..+..+||-.......+.
T Consensus       235 ~~~~~A~~~~~~al~~~p~~~~a~~~l~  262 (272)
T 3u4t_A          235 RDKVKADAAWKNILALDPTNKKAIDGLK  262 (272)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHhcCccHHHHHHHhh
Confidence            3456666666666666666554444433

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.61  E-value=4.3e-14  Score=124.40  Aligned_cols=238  Identities=15%  Similarity=0.125  Sum_probs=157.3

Q ss_pred             HhhHHHHHHHHHHhhcc----c-----cCCC-CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHH
Q 024043            5 IARAEEFEKKAEKKLNG----W-----GLFG-SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLA   60 (273)
Q Consensus         5 ~~~a~~l~~~Aek~~k~----~-----~~~~-~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~   60 (273)
                      .++|..++.++-+.-..    +     .++. |++++|..+|.++              |.++...|++++|+..|.+++
T Consensus        49 ~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  128 (388)
T 1w3b_A           49 LDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL  128 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            45666666666554321    1     1223 8999999888764              889999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043           61 NCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAA  139 (273)
Q Consensus        61 ~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al  139 (273)
                      .+...      ....+..+|.++... ++++|+++|++++...+.      .+.++.++|.++...|++++|+.+|++|+
T Consensus       129 ~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al  196 (388)
T 1w3b_A          129 QYNPD------LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN------FAVAWSNLGCVFNAQGEIWLAIHHFEKAV  196 (388)
T ss_dssp             HHCTT------CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HhCCC------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            87432      245677899999887 999999999999886432      23466677777777777777777777766


Q ss_pred             HHHhcc--------------CC--------------cccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhc
Q 024043          140 DMFQNE--------------EV--------------TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG  191 (273)
Q Consensus       140 ~~~~~~--------------~~--------------~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~  191 (273)
                      .+.+..              ++              .+....++..+|.++...|++++|++.|++++...+..      
T Consensus       197 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------  270 (388)
T 1w3b_A          197 TLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF------  270 (388)
T ss_dssp             HHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC------
T ss_pred             hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------
Confidence            553211              00              01113456677777777777777777777776543332      


Q ss_pred             hhhHHHHHHHHHHhcCCHHHHHHHHHHHHHH-------HH--HHhhcCHhHHHHHHHhhhccCCCchhHHHHHHHHHHh
Q 024043          192 VKGHLLNAGICQLCKGDVVAITNALERYQDI-------AA--SMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEK  261 (273)
Q Consensus       192 ~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~l-------l~--a~~~~d~~~~~~~~~~~~~~~~ld~~~~~~l~~~~~~  261 (273)
                       ...+..+|.++...|++++|...+++...+       +.  +.-......+.+++..|..+..++|.....+..+...
T Consensus       271 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  348 (388)
T 1w3b_A          271 -PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV  348 (388)
T ss_dssp             -HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence             234667778888888888888888775411       00  1111223456677777887777777666555555443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.61  E-value=3.6e-15  Score=121.94  Aligned_cols=207  Identities=16%  Similarity=0.158  Sum_probs=147.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHH
Q 024043           34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAA  112 (273)
Q Consensus        34 ~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a  112 (273)
                      +.+...|.++...|++++|+.+|.+++.+... .+.    .++..+|.++... ++++|+.+|++++.+...      -.
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~   76 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN-QDS----VTAYNCGVCADNIKKYKEAADYFDIAIKKNYN------LA   76 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS------HH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCC-CCc----HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc------hH
Confidence            45667799999999999999999999988531 122    4666699999887 999999999999975432      46


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC-cccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhc
Q 024043          113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV-TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG  191 (273)
Q Consensus       113 ~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~-~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~  191 (273)
                      .++..+|.++..+|++++|+.+|++++++.+.... ......++..+|.++..+|++++|++.|++++...+.+    + 
T Consensus        77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~-  151 (228)
T 4i17_A           77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKK----W-  151 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHH----H-
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCc----c-
Confidence            68999999999999999999999999999875432 12344789999999999999999999999997543320    0 


Q ss_pred             hhhHHHHHHHHHHhcCCH--HHHHHH----HHHHHHHHHHHhhcCHhHHHHHHHhhhccCCCchhHH---HHHHHHHH
Q 024043          192 VKGHLLNAGICQLCKGDV--VAITNA----LERYQDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKT---TLLLRVKE  260 (273)
Q Consensus       192 ~~~~~~~~gl~~l~~gd~--~~A~~~----~~~~~~ll~a~~~~d~~~~~~~~~~~~~~~~ld~~~~---~~l~~~~~  260 (273)
                      ....+.++|.++...|+.  ..+...    ...|....    ..-.+.+.+++..|.....++|-..   .+|..|+.
T Consensus       152 ~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~  225 (228)
T 4i17_A          152 KTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEK----AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA  225 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH----HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence            234677888888777654  111111    11122111    1123346677777776666666554   44444443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.59  E-value=3.4e-13  Score=111.21  Aligned_cols=171  Identities=11%  Similarity=0.090  Sum_probs=138.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc
Q 024043           27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI  105 (273)
Q Consensus        27 ~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~  105 (273)
                      .+.......+...|.++...|++++|+.+|.++......      ...++..+|.++... ++++|+++|++++.+....
T Consensus        31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  104 (252)
T 2ho1_A           31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS------SADAHAALAVVFQTEMEPKLADEEYRKALASDSRN  104 (252)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc
Confidence            456666778888899999999999999999999877421      246788889999777 9999999999999875432


Q ss_pred             CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          106 GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       106 g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                            ..++..+|.++...|++++|+.+|++++.    .+.......++..+|.++...|++++|+.+|++++...+.+
T Consensus       105 ------~~~~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  174 (252)
T 2ho1_A          105 ------ARVLNNYGGFLYEQKRYEEAYQRLLEASQ----DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ  174 (252)
T ss_dssp             ------HHHHHHHHHHHHHTTCHHHHHHHHHHHTT----CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred             ------HHHHHHHHHHHHHHhHHHHHHHHHHHHHh----CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc
Confidence                  46889999999999999999999999987    22223456788999999999999999999999997654432


Q ss_pred             chhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          186 NLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       186 ~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                             ...+..++.++...|++..|...+++..
T Consensus       175 -------~~~~~~la~~~~~~g~~~~A~~~~~~~~  202 (252)
T 2ho1_A          175 -------PSVALEMADLLYKEREYVPARQYYDLFA  202 (252)
T ss_dssp             -------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                   2356778889999999999999988864

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.59  E-value=7.5e-13  Score=106.55  Aligned_cols=166  Identities=12%  Similarity=0.134  Sum_probs=132.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhH
Q 024043           32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM  110 (273)
Q Consensus        32 A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~  110 (273)
                      -...+...|.++...|++++|+.+|.++.......      ..++..+|.++... ++++|+++|++++.+....     
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-----   75 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKN------ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS-----   75 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccc------hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----
Confidence            34566677899999999999999999998864321      45778889988777 9999999999998875432     


Q ss_pred             HHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhh
Q 024043          111 AARYYKEIAELYESE-HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLK  189 (273)
Q Consensus       111 ~a~~l~~lg~~~~~~-g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~  189 (273)
                       ..++..+|.++... |++++|+.+|+++++    .+.......++..+|.++...|++++|+.+|++++...+.+    
T Consensus        76 -~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----  146 (225)
T 2vq2_A           76 -AEINNNYGWFLCGRLNRPAESMAYFDKALA----DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF----  146 (225)
T ss_dssp             -HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT----STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----
T ss_pred             -hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----
Confidence             45788999999999 999999999999988    22223445788999999999999999999999987654433    


Q ss_pred             hchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          190 YGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       190 ~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                         ...+..++.++...|++..|...+++..
T Consensus       147 ---~~~~~~la~~~~~~~~~~~A~~~~~~~~  174 (225)
T 2vq2_A          147 ---PPAFKELARTKMLAGQLGDADYYFKKYQ  174 (225)
T ss_dssp             ---HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             ---chHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence               2356778888999999999998888764

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.59  E-value=4.5e-14  Score=122.77  Aligned_cols=164  Identities=10%  Similarity=-0.006  Sum_probs=119.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 024043           38 KAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYK  116 (273)
Q Consensus        38 ~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~  116 (273)
                      ..|.++...|++++|+.+|.+++.....      ...++..+|.++... ++++|+.+|++++.+.+..      ..++.
T Consensus        69 ~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~  136 (368)
T 1fch_A           69 EEGLRRLQEGDLPNAVLLFEAAVQQDPK------HMEAWQYLGTTQAENEQELLAISALRRCLELKPDN------QTALM  136 (368)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCC------HHHHH
Confidence            4577888888888888888888765321      245677788888766 8888888888888765332      44777


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHhccCCccc---------------------------------------------H
Q 024043          117 EIAELYESEHNIEQTIVFFEKAADMFQNEEVTTS---------------------------------------------A  151 (273)
Q Consensus       117 ~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~---------------------------------------------~  151 (273)
                      .+|.++...|++++|+.+|++++.+.+.......                                             .
T Consensus       137 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~  216 (368)
T 1fch_A          137 ALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSID  216 (368)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCccc
Confidence            7888888888888888888877766544322111                                             2


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       152 ~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      ..++..+|.++...|++++|+.+|++++...+.+       ...+..+|.++...|++..|...+++..
T Consensus       217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al  278 (368)
T 1fch_A          217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND-------YLLWNKLGATLANGNQSEEAVAAYRRAL  278 (368)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4677888888889999999999998887654433       2356778888888899888888888754

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.58  E-value=2.6e-14  Score=126.88  Aligned_cols=213  Identities=8%  Similarity=0.017  Sum_probs=142.4

Q ss_pred             CCHHHHHHHHHHH--------------HHHHHHcCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHH
Q 024043           27 SKYEDAADLFDKA--------------ANSFKLAKS-WDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNE   90 (273)
Q Consensus        27 ~~~~~A~~~~~~a--------------~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~e   90 (273)
                      +++++|..+|.++              |.++...|+ +++|+.+|.+++.+..+      -..++.++|.++... ++++
T Consensus       111 g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~------~~~a~~~~g~~~~~~g~~~e  184 (382)
T 2h6f_A          111 ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK------NYQVWHHRRVLVEWLRDPSQ  184 (382)
T ss_dssp             CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCCTT
T ss_pred             CChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHccCHHH
Confidence            3466666666654              556666775 77777777777766422      234666777777666 7777


Q ss_pred             HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHH-hcCHH
Q 024043           91 AISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAE-LEQYH  169 (273)
Q Consensus        91 A~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~-~g~y~  169 (273)
                      |+.+|++|+.+....      ..++.++|.++..+|++++|+.+|++|+++....      ..++..+|.++.. .|.++
T Consensus       185 Al~~~~kal~ldP~~------~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~------~~a~~~lg~~l~~l~~~~~  252 (382)
T 2h6f_A          185 ELEFIADILNQDAKN------YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN------NSVWNQRYFVISNTTGYND  252 (382)
T ss_dssp             HHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCSCS
T ss_pred             HHHHHHHHHHhCccC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCcch
Confidence            777777777765433      3477788888888888888888888888775422      3567788888887 44446


Q ss_pred             HH-----HHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcC--CHHHHHHHHHHHH----------HHHHHHhh-c--
Q 024043          170 KS-----IEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKG--DVVAITNALERYQ----------DIAASMDE-E--  229 (273)
Q Consensus       170 ~A-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~g--d~~~A~~~~~~~~----------~ll~a~~~-~--  229 (273)
                      +|     +++|++++...+++.       ..+++++.++...|  ++.+|.+.+.+..          .+...+.. +  
T Consensus       253 eA~~~~el~~~~~Al~l~P~~~-------~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~  325 (382)
T 2h6f_A          253 RAVLEREVQYTLEMIKLVPHNE-------SAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLEN  325 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCH-------HHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHCCCCH-------HHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcc
Confidence            66     477777776555442       35667777777777  6778877776541          22222222 1  


Q ss_pred             ---CHh-HHHHHHHhhhcc-CCCchhHHHHHHHHHHhccc
Q 024043          230 ---DIA-KFTDVVKEFDSM-TPLDPWKTTLLLRVKEKLKA  264 (273)
Q Consensus       230 ---d~~-~~~~~~~~~~~~-~~ld~~~~~~l~~~~~~~~~  264 (273)
                         +.. .+.+++.-|..+ ..+||.....+......+..
T Consensus       326 ~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~  365 (382)
T 2h6f_A          326 QCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS  365 (382)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence               222 468999999999 89999998888877776653

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.58  E-value=1.1e-13  Score=118.17  Aligned_cols=196  Identities=15%  Similarity=0.126  Sum_probs=158.3

Q ss_pred             HhhHHHHHHHHHHhhcc----c---c--CC-CC-CHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHH
Q 024043            5 IARAEEFEKKAEKKLNG----W---G--LF-GS-KYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKL   59 (273)
Q Consensus         5 ~~~a~~l~~~Aek~~k~----~---~--~~-~~-~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a   59 (273)
                      .++|..++.++-+.-..    +   +  ++ .+ ++++|..+|.++              |.++...|++++|+.+|.++
T Consensus        72 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  151 (330)
T 3hym_B           72 ANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTA  151 (330)
T ss_dssp             HHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            46777777777664431    1   1  12 26 899999998875              67899999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043           60 ANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKA  138 (273)
Q Consensus        60 ~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~A  138 (273)
                      .......      ...+..+|.+|... ++++|+.++++++.+....      ..++..+|.++...|++++|+.+++++
T Consensus       152 ~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a  219 (330)
T 3hym_B          152 AQLMKGC------HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED------PFVMHEVGVVAFQNGEWKTAEKWFLDA  219 (330)
T ss_dssp             HHHTTTC------SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHhcccc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            9886432      23566689999877 9999999999999875433      468999999999999999999999999


Q ss_pred             HHHHhccCCc---ccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHH
Q 024043          139 ADMFQNEEVT---TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNA  215 (273)
Q Consensus       139 l~~~~~~~~~---~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~  215 (273)
                      +.+.+..+..   .....++..+|.++...|++++|+.+|++++...+.+       ...+..+|.++...|++.+|...
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~  292 (330)
T 3hym_B          220 LEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQN-------ASTYSAIGYIHSLMGNFENAVDY  292 (330)
T ss_dssp             HHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------SHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccc-------hHHHHHHHHHHHHhccHHHHHHH
Confidence            9999776543   2224689999999999999999999999998654443       24677889999999999999999


Q ss_pred             HHHH
Q 024043          216 LERY  219 (273)
Q Consensus       216 ~~~~  219 (273)
                      +++.
T Consensus       293 ~~~a  296 (330)
T 3hym_B          293 FHTA  296 (330)
T ss_dssp             HHTT
T ss_pred             HHHH
Confidence            8875

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.57  E-value=2.3e-13  Score=118.19  Aligned_cols=177  Identities=12%  Similarity=0.073  Sum_probs=130.1

Q ss_pred             CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHH
Q 024043           27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA   91 (273)
Q Consensus        27 ~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA   91 (273)
                      +++++|..+|.++              |.++...|++++|+.+|.+++.+...      ...++..+|.+|... ++++|
T Consensus        78 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~g~~~~A  151 (368)
T 1fch_A           78 GDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD------NQTALMALAVSFTNESLQRQA  151 (368)
T ss_dssp             TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHH
Confidence            5777777776654              66778888888888888888766421      133555556666554 66666


Q ss_pred             HHHHHHHHHHHHhcCChh-------------------------------------------H--HHHHHHHHHHHHHhcC
Q 024043           92 ISCLEQAVNMFCDIGRLS-------------------------------------------M--AARYYKEIAELYESEH  126 (273)
Q Consensus        92 ~~~~~~Al~~~~~~g~~~-------------------------------------------~--~a~~l~~lg~~~~~~g  126 (273)
                      +.+|++++.+.+......                                           .  .+.++..+|.++...|
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g  231 (368)
T 1fch_A          152 CEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG  231 (368)
T ss_dssp             HHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC
Confidence            666655554332211111                                           0  3678899999999999


Q ss_pred             CHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhc
Q 024043          127 NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCK  206 (273)
Q Consensus       127 ~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~  206 (273)
                      ++++|+.+|++++.+.+..      ..++..+|.++...|++++|+.+|++++...+.+       ...+..+|.++...
T Consensus       232 ~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~l~~~~~~~  298 (368)
T 1fch_A          232 EYDKAVDCFTAALSVRPND------YLLWNKLGATLANGNQSEEAVAAYRRALELQPGY-------IRSRYNLGISCINL  298 (368)
T ss_dssp             CHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHC
Confidence            9999999999999985422      4679999999999999999999999998654433       24678889999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q 024043          207 GDVVAITNALERYQDI  222 (273)
Q Consensus       207 gd~~~A~~~~~~~~~l  222 (273)
                      |++..|...+++...+
T Consensus       299 g~~~~A~~~~~~al~~  314 (368)
T 1fch_A          299 GAHREAVEHFLEALNM  314 (368)
T ss_dssp             TCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999987544

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.56  E-value=3.1e-13  Score=112.78  Aligned_cols=171  Identities=22%  Similarity=0.286  Sum_probs=133.5

Q ss_pred             HhhHHHHHHHHHHhhccccCCCCCHHHHHHHHH-----------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 024043            5 IARAEEFEKKAEKKLNGWGLFGSKYEDAADLFD-----------------KAANSFKLAKSWDKAGATYVKLANCHLKLE   67 (273)
Q Consensus         5 ~~~a~~l~~~Aek~~k~~~~~~~~~~~A~~~~~-----------------~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~   67 (273)
                      +..+..++..|...++     .++|++|...|.                 ..|.+|...|+|++|+..|.+++..+....
T Consensus        12 ~~~~~~~~~~a~~~~~-----~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~   86 (261)
T 3qky_A           12 HSSPQEAFERAMEFYN-----QGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP   86 (261)
T ss_dssp             CSSHHHHHHHHHHHHH-----TTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred             CCCHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc
Confidence            3467777777777666     134555554444                 457889999999999999999998864332


Q ss_pred             CHHHHHHHHHHHHHHHhc--------c-CHHHHHHHHHHHHHHHHhcCChhHH-----------HHHHHHHHHHHHhcCC
Q 024043           68 SKHEAAQAYVDAAHCYKK--------T-SSNEAISCLEQAVNMFCDIGRLSMA-----------ARYYKEIAELYESEHN  127 (273)
Q Consensus        68 ~~~~aa~~~~~~~~~~~~--------~-~~~eA~~~~~~Al~~~~~~g~~~~~-----------a~~l~~lg~~~~~~g~  127 (273)
                         ....++..+|.++..        . ++++|+..|++++..++.......+           +..+..+|.+|...|+
T Consensus        87 ---~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~  163 (261)
T 3qky_A           87 ---RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERREL  163 (261)
T ss_dssp             ---THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ---hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence               345678899999977        6 9999999999999988765443322           1223889999999999


Q ss_pred             HHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHh----------cCHHHHHHHHHHHHHHHhccc
Q 024043          128 IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL----------EQYHKSIEIYEEIARQSLNNN  186 (273)
Q Consensus       128 ~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~----------g~y~~A~~~~~~~~~~~~~~~  186 (273)
                      +++|+..|+++++.++...   ....++..+|.++..+          |++++|+..|++++...++++
T Consensus       164 ~~~A~~~~~~~l~~~p~~~---~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  229 (261)
T 3qky_A          164 YEAAAVTYEAVFDAYPDTP---WADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP  229 (261)
T ss_dssp             HHHHHHHHHHHHHHCTTST---THHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHHHHHHCCCCc---hHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence            9999999999999886542   3457899999999977          999999999999988777653

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.56  E-value=5.6e-13  Score=111.21  Aligned_cols=171  Identities=17%  Similarity=0.110  Sum_probs=135.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHH
Q 024043           36 FDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARY  114 (273)
Q Consensus        36 ~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~  114 (273)
                      +...|..+...|+|++|+..|.+++....   +......++..+|.+|... ++++|+.+|++++.+++...   ....+
T Consensus        18 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~a   91 (261)
T 3qky_A           18 AFERAMEFYNQGKYDRAIEYFKAVFTYGR---THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP---RVPQA   91 (261)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHGGGCS---CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT---THHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCC---CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc---hhHHH
Confidence            33458888899999999999999987653   2223467889999999887 99999999999999876443   34578


Q ss_pred             HHHHHHHHHh--------cCCHHHHHHHHHHHHHHHhccCCcccHHHHH--------------HHHHHHHHHhcCHHHHH
Q 024043          115 YKEIAELYES--------EHNIEQTIVFFEKAADMFQNEEVTTSANQCK--------------QKVAQYAAELEQYHKSI  172 (273)
Q Consensus       115 l~~lg~~~~~--------~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~--------------~~~a~~~~~~g~y~~A~  172 (273)
                      +..+|.++..        .|++++|+..|+++++.++....   ...++              ..+|.++...|+|++|+
T Consensus        92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  168 (261)
T 3qky_A           92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL---VDDATQKIRELRAKLARKQYEAARLYERRELYEAAA  168 (261)
T ss_dssp             HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence            9999999999        99999999999999999876543   22333              88999999999999999


Q ss_pred             HHHHHHHHHHhccchhhhchhhHHHHHHHHHHhc----------CCHHHHHHHHHHH
Q 024043          173 EIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCK----------GDVVAITNALERY  219 (273)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~----------gd~~~A~~~~~~~  219 (273)
                      ..|++++...++++    .....++.+|.++...          |++.+|...+++.
T Consensus       169 ~~~~~~l~~~p~~~----~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~  221 (261)
T 3qky_A          169 VTYEAVFDAYPDTP----WADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERL  221 (261)
T ss_dssp             HHHHHHHHHCTTST----THHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCc----hHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHH
Confidence            99999987666542    1345678888888876          6666666666654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.56  E-value=7.6e-13  Score=110.95  Aligned_cols=161  Identities=15%  Similarity=0.224  Sum_probs=122.9

Q ss_pred             CCHHHHHHHHHHH------------HHHHHH----cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc----c
Q 024043           27 SKYEDAADLFDKA------------ANSFKL----AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK----T   86 (273)
Q Consensus        27 ~~~~~A~~~~~~a------------~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~----~   86 (273)
                      +++++|..+|.++            |.+|..    .+++++|+.+|.++++.    +    ...++..+|.+|..    .
T Consensus        20 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~g~~~~   91 (273)
T 1ouv_A           20 KDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----N----YSNGCHLLGNLYYSGQGVS   91 (273)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHTSSSC
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----C----CHHHHHHHHHHHhCCCCcc
Confidence            4666666666654            667888    88899999999888765    2    24677788888876    5


Q ss_pred             -CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHH
Q 024043           87 -SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES----EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQY  161 (273)
Q Consensus        87 -~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~----~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~  161 (273)
                       ++++|+.+|++|++.    +    .+.++.++|.+|..    .+++++|+.+|++|++.-        ...++..+|.+
T Consensus        92 ~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~  155 (273)
T 1ouv_A           92 QNTNKALQYYSKACDL----K----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--------DGDGCTILGSL  155 (273)
T ss_dssp             CCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHc----C----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--------cHHHHHHHHHH
Confidence             889999999988864    2    25678888888888    889999999999888752        13567888888


Q ss_pred             HHH----hcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 024043          162 AAE----LEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC----KGDVVAITNALERYQ  220 (273)
Q Consensus       162 ~~~----~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~----~gd~~~A~~~~~~~~  220 (273)
                      +..    .+++++|+.+|++++..  +       ....++.+|.++..    .+|+.+|...+++..
T Consensus       156 ~~~~~~~~~~~~~A~~~~~~a~~~--~-------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~  213 (273)
T 1ouv_A          156 YDAGRGTPKDLKKALASYDKACDL--K-------DSPGCFNAGNMYHHGEGATKNFKEALARYSKAC  213 (273)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHT--T-------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHH
T ss_pred             HHcCCCCCCCHHHHHHHHHHHHHC--C-------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH
Confidence            888    88999999999888642  2       12356778888888    888888888887754

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.55  E-value=3.2e-13  Score=116.20  Aligned_cols=236  Identities=14%  Similarity=0.058  Sum_probs=168.3

Q ss_pred             HhhHHHHHHHHHHhhcc----c-----cCCC-CCHHHHHHHHHHH-----------------------------HHHHHH
Q 024043            5 IARAEEFEKKAEKKLNG----W-----GLFG-SKYEDAADLFDKA-----------------------------ANSFKL   45 (273)
Q Consensus         5 ~~~a~~l~~~Aek~~k~----~-----~~~~-~~~~~A~~~~~~a-----------------------------~~~~~~   45 (273)
                      .++|.+.+.++-+.-..    +     .++. +++++|...|.++                             +.++..
T Consensus        53 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  132 (359)
T 3ieg_A           53 SKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFD  132 (359)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677777777664331    1     1122 7888888888766                             578888


Q ss_pred             cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh
Q 024043           46 AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES  124 (273)
Q Consensus        46 ~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~  124 (273)
                      .|++++|+.+|.++......      ...++..+|.++... ++++|+.++++++.+.+..      ..++..+|.++..
T Consensus       133 ~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~  200 (359)
T 3ieg_A          133 GADYTAAITFLDKILEVCVW------DAELRELRAECFIKEGEPRKAISDLKAASKLKSDN------TEAFYKISTLYYQ  200 (359)
T ss_dssp             TTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC------HHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCCC------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Confidence            99999999999999877432      236788899999887 9999999999998864322      3689999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHhccCCcccH------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHH
Q 024043          125 EHNIEQTIVFFEKAADMFQNEEVTTSA------NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLN  198 (273)
Q Consensus       125 ~g~~~~A~~~y~~Al~~~~~~~~~~~~------~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (273)
                      .|++++|+.+|++++++.+........      .......|.++...|++++|+..|++++...+.++.   .....+..
T Consensus       201 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~  277 (359)
T 3ieg_A          201 LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAE---YTVRSKER  277 (359)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHH---HHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchH---HHHHHHHH
Confidence            999999999999999887654321100      112345688999999999999999999876555421   12234567


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHH---------HHHHhhcCHhHHHHHHHhhhccCCCchhHHHHH
Q 024043          199 AGICQLCKGDVVAITNALERYQDI---------AASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLL  255 (273)
Q Consensus       199 ~gl~~l~~gd~~~A~~~~~~~~~l---------l~a~~~~d~~~~~~~~~~~~~~~~ld~~~~~~l  255 (273)
                      +|.++...|++.+|...+++...+         .-+........+.+++..|..+..++|-...+.
T Consensus       278 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~  343 (359)
T 3ieg_A          278 ICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIR  343 (359)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHH
Confidence            889999999999999999986511         001111123346667777776666666544333

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.55  E-value=1.7e-12  Score=111.69  Aligned_cols=244  Identities=14%  Similarity=0.064  Sum_probs=158.7

Q ss_pred             HhhHHHHHHHHHHhhcc----c-----cCCC-CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHH
Q 024043            5 IARAEEFEKKAEKKLNG----W-----GLFG-SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLA   60 (273)
Q Consensus         5 ~~~a~~l~~~Aek~~k~----~-----~~~~-~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~   60 (273)
                      .++|.+++.++-+.-..    +     .++. +++++|...|.++              |.++...|++++|+.+|.++.
T Consensus        19 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~   98 (359)
T 3ieg_A           19 LADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVL   98 (359)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            56777777777664421    1     1122 7888888877765              567777888888888888877


Q ss_pred             HHHHHcCCHHHH---------HHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHH
Q 024043           61 NCHLKLESKHEA---------AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQ  130 (273)
Q Consensus        61 ~~~~~~~~~~~a---------a~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~  130 (273)
                      .+....++....         ...+...|.++... ++++|+.++++++...+..      ..++..+|.++...|++++
T Consensus        99 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~  172 (359)
T 3ieg_A           99 KSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD------AELRELRAECFIKEGEPRK  172 (359)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHH
T ss_pred             hcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHCCCHHH
Confidence            653200011111         11123336677666 8899999999888775432      4588899999999999999


Q ss_pred             HHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhc-----hhhHHHHHHHHHHh
Q 024043          131 TIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG-----VKGHLLNAGICQLC  205 (273)
Q Consensus       131 A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~gl~~l~  205 (273)
                      |+.++++++.+.+.      ...++..+|.++...|++++|+..|++++...+..+.....     ........+.++..
T Consensus       173 A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  246 (359)
T 3ieg_A          173 AISDLKAASKLKSD------NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR  246 (359)
T ss_dssp             HHHHHHHHHTTCSC------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999987432      23678999999999999999999999998665544211000     00112345778899


Q ss_pred             cCCHHHHHHHHHHHHHH--------HH-----HHhhcCHhHHHHHHHhhhccCCCchhHHHHHHHHHH
Q 024043          206 KGDVVAITNALERYQDI--------AA-----SMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKE  260 (273)
Q Consensus       206 ~gd~~~A~~~~~~~~~l--------l~-----a~~~~d~~~~~~~~~~~~~~~~ld~~~~~~l~~~~~  260 (273)
                      .|++.+|...+++...+        ..     +........+.+++..|+.+..++|-...++..+..
T Consensus       247 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  314 (359)
T 3ieg_A          247 DGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAE  314 (359)
T ss_dssp             TTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            99999999999876510        00     111112334566666666666666655555554444

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.55  E-value=1.3e-13  Score=112.79  Aligned_cols=158  Identities=16%  Similarity=0.207  Sum_probs=114.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 024043           38 KAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYK  116 (273)
Q Consensus        38 ~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~  116 (273)
                      ..|.++...|++++|+.+|.++......      ...++..+|.++... ++++|+.++++++.+....      ..++.
T Consensus        62 ~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~  129 (243)
T 2q7f_A           62 NFANLLSSVNELERALAFYDKALELDSS------AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN------GDLFY  129 (243)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS------HHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCc------chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC------HHHHH
Confidence            3467788888888888888888776422      245677778887766 8888888888887765432      34677


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHH
Q 024043          117 EIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHL  196 (273)
Q Consensus       117 ~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~  196 (273)
                      .+|.++...|++++|+.++++++++....      ..++..+|.++...|++++|+.+|++++...+.+       ...+
T Consensus       130 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~  196 (243)
T 2q7f_A          130 MLGTVLVKLEQPKLALPYLQRAVELNEND------TEARFQFGMCLANEGMLDEALSQFAAVTEQDPGH-------ADAF  196 (243)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC-------HHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-------HHHH
Confidence            88888888888888888888888775422      3567788888888888888888888876543332       2356


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          197 LNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       197 ~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      ..++.++...|++..|...+++..
T Consensus       197 ~~la~~~~~~~~~~~A~~~~~~~~  220 (243)
T 2q7f_A          197 YNAGVTYAYKENREKALEMLDKAI  220 (243)
T ss_dssp             HHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHH
Confidence            677788888888888887777753

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.55  E-value=8.2e-13  Score=120.51  Aligned_cols=197  Identities=12%  Similarity=0.114  Sum_probs=158.4

Q ss_pred             HhhHHHHHHHHHHhhcc--------ccCCC-CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHH
Q 024043            5 IARAEEFEKKAEKKLNG--------WGLFG-SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLAN   61 (273)
Q Consensus         5 ~~~a~~l~~~Aek~~k~--------~~~~~-~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~~   61 (273)
                      .++|.+.+.++-+.-..        ..++. +++++|...|.++              |.++...|++++|+..|.++..
T Consensus       259 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  338 (537)
T 3fp2_A          259 LLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS  338 (537)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            46777777777664321        11233 8899999888875              6788889999999999999998


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 024043           62 CHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAAD  140 (273)
Q Consensus        62 ~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~  140 (273)
                      .....      ..++..+|.++... ++++|+.++++++.+....      ..++..+|.++...|++++|+.+|+++++
T Consensus       339 ~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  406 (537)
T 3fp2_A          339 LNPEN------VYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL------PEVPTFFAEILTDRGDFDTAIKQYDIAKR  406 (537)
T ss_dssp             HCTTC------SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------THHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            75332      25678899999777 9999999999999886544      34888999999999999999999999999


Q ss_pred             HHhccCCcccHHHHHHHHHHHHHHh----------cCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHH
Q 024043          141 MFQNEEVTTSANQCKQKVAQYAAEL----------EQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVV  210 (273)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~a~~~~~~----------g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~  210 (273)
                      +.+...........+...|.++...          |++++|+.+|++++...+++       ...+..+|.++...|++.
T Consensus       407 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~~~~~l~~~~~~~g~~~  479 (537)
T 3fp2_A          407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS-------EQAKIGLAQLKLQMEKID  479 (537)
T ss_dssp             HHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHH
T ss_pred             cCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhccHH
Confidence            9987766544445677888999998          99999999999998665543       246788899999999999


Q ss_pred             HHHHHHHHHH
Q 024043          211 AITNALERYQ  220 (273)
Q Consensus       211 ~A~~~~~~~~  220 (273)
                      +|...+++..
T Consensus       480 ~A~~~~~~al  489 (537)
T 3fp2_A          480 EAIELFEDSA  489 (537)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999875

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.55  E-value=1.1e-12  Score=108.05  Aligned_cols=171  Identities=16%  Similarity=0.091  Sum_probs=138.6

Q ss_pred             CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHH
Q 024043           27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA   91 (273)
Q Consensus        27 ~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA   91 (273)
                      +++++|..+|.++              |.+|...|++++|..+|.++......      ...++..+|.++... ++++|
T Consensus        51 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~~A  124 (252)
T 2ho1_A           51 GNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR------NARVLNNYGGFLYEQKRYEEA  124 (252)
T ss_dssp             TCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHH
T ss_pred             CChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------cHHHHHHHHHHHHHHhHHHHH
Confidence            4666666666654              77899999999999999999987432      246788899999777 99999


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHH
Q 024043           92 ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS  171 (273)
Q Consensus        92 ~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A  171 (273)
                      +.+|++++.    .+.......++..+|.++...|++++|+.+|++++++....      ..++..+|.++...|++++|
T Consensus       125 ~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~g~~~~A  194 (252)
T 2ho1_A          125 YQRLLEASQ----DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ------PSVALEMADLLYKEREYVPA  194 (252)
T ss_dssp             HHHHHHHTT----CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHh----CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCCHHHH
Confidence            999999987    33445567899999999999999999999999999885422      46789999999999999999


Q ss_pred             HHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          172 IEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      +.+|++++...+.+       ...+..++.++...|++..|.+.+++..
T Consensus       195 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~A~~~~~~~~  236 (252)
T 2ho1_A          195 RQYYDLFAQGGGQN-------ARSLLLGIRLAKVFEDRDTAASYGLQLK  236 (252)
T ss_dssp             HHHHHHHHTTSCCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcCc-------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            99999987533322       2355677888899999999999888863

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.54  E-value=8.4e-13  Score=120.44  Aligned_cols=230  Identities=13%  Similarity=0.063  Sum_probs=169.4

Q ss_pred             hhHHHHHHHHHHhhccccCCCCCHH----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024043            6 ARAEEFEKKAEKKLNGWGLFGSKYE----DAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAH   81 (273)
Q Consensus         6 ~~a~~l~~~Aek~~k~~~~~~~~~~----~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~   81 (273)
                      .++...+.+|.+.+....-..|+..    .-+..+...|.++...|++++|+.+|.++.....   +    ..++..+|.
T Consensus       212 ~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~---~----~~~~~~l~~  284 (537)
T 3fp2_A          212 LVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP---T----PNSYIFLAL  284 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC---C----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC---C----chHHHHHHH
Confidence            3455566666666652111123322    2345667778999999999999999999998632   2    467888999


Q ss_pred             HHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHH
Q 024043           82 CYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQ  160 (273)
Q Consensus        82 ~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~  160 (273)
                      ++... ++++|+.+|++++.+....      +.++..+|.++...|++++|+.+|++++.+....      ..++..+|.
T Consensus       285 ~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~  352 (537)
T 3fp2_A          285 TLADKENSQEFFKFFQKAVDLNPEY------PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN------VYPYIQLAC  352 (537)
T ss_dssp             HTCCSSCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------SHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHhccCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHH
Confidence            99877 9999999999999876542      4579999999999999999999999999986443      256889999


Q ss_pred             HHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH---------------
Q 024043          161 YAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDIAAS---------------  225 (273)
Q Consensus       161 ~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~a---------------  225 (273)
                      ++...|++++|+.+|++++...+.+       ...+..+|.++...|++..|...+++...+...               
T Consensus       353 ~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a  425 (537)
T 3fp2_A          353 LLYKQGKFTESEAFFNETKLKFPTL-------PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKA  425 (537)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTC-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHH
Confidence            9999999999999999998665443       235677899999999999999999886532110               


Q ss_pred             HhhcCH----------hHHHHHHHhhhccCCCchhHHHHHHHHHHh
Q 024043          226 MDEEDI----------AKFTDVVKEFDSMTPLDPWKTTLLLRVKEK  261 (273)
Q Consensus       226 ~~~~d~----------~~~~~~~~~~~~~~~ld~~~~~~l~~~~~~  261 (273)
                      ......          ..+.+++..|..+..++|....++..+...
T Consensus       426 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~  471 (537)
T 3fp2_A          426 TILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQL  471 (537)
T ss_dssp             HHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            001111          677888888887777777666555555443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.53  E-value=8.9e-13  Score=122.08  Aligned_cols=238  Identities=12%  Similarity=0.030  Sum_probs=164.1

Q ss_pred             HhhHHHHHHHHHHhhc-ccc--------CCC-CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHH
Q 024043            5 IARAEEFEKKAEKKLN-GWG--------LFG-SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLA   60 (273)
Q Consensus         5 ~~~a~~l~~~Aek~~k-~~~--------~~~-~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~   60 (273)
                      .++|.+++.++-+.-. ...        +.. |++++|...|.++              +.+|...|++++|..+|.++.
T Consensus       321 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  400 (597)
T 2xpi_A          321 FIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSS  400 (597)
T ss_dssp             HHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            4566666666654322 110        112 6666666666543              466777788888888888777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043           61 NCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAA  139 (273)
Q Consensus        61 ~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al  139 (273)
                      ++...      -..++..++.+|... ++++|+++|++++.+....      ..++..+|.++...|++++|+++|++++
T Consensus       401 ~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~  468 (597)
T 2xpi_A          401 TMDPQ------FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT------HLPYLFLGMQHMQLGNILLANEYLQSSY  468 (597)
T ss_dssp             HHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTC------SHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            65321      134677788888666 8999999999888765432      3578889999999999999999999999


Q ss_pred             HHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043          140 DMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY  219 (273)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~  219 (273)
                      ++...      ...++..+|.++...|++++|+++|++++......+.........+..+|.++...|+++.|...+++.
T Consensus       469 ~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  542 (597)
T 2xpi_A          469 ALFQY------DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG  542 (597)
T ss_dssp             HHCCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhCCC------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            87533      236789999999999999999999999976543311111112457788899999999999999999886


Q ss_pred             H-----------HHHHHHhhcCHhHHHHHHHhhhccCCCchhHHHHHHHHHHhc
Q 024043          220 Q-----------DIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKL  262 (273)
Q Consensus       220 ~-----------~ll~a~~~~d~~~~~~~~~~~~~~~~ld~~~~~~l~~~~~~~  262 (273)
                      .           .+...+.  ....+.+++..|..+..++|-.......+.+.+
T Consensus       543 ~~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  594 (597)
T 2xpi_A          543 LLLSTNDANVHTAIALVYL--HKKIPGLAITHLHESLAISPNEIMASDLLKRAL  594 (597)
T ss_dssp             HHHSSCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred             HHhCCCChHHHHHHHHHHH--HhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            4           2222221  123456666667777777777666666665554

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.53  E-value=2.9e-13  Score=123.33  Aligned_cols=188  Identities=9%  Similarity=0.085  Sum_probs=149.4

Q ss_pred             HHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHH
Q 024043           35 LFDKAANSFKLAKSW-DKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAA  112 (273)
Q Consensus        35 ~~~~a~~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a  112 (273)
                      .+...|.++...|++ ++|+.+|.+++++...      .+.++..+|.+|... ++++|+.+|++|+.+.     +.  +
T Consensus       104 ~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~--~  170 (474)
T 4abn_A          104 ALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE------LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC-----KN--K  170 (474)
T ss_dssp             HHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC-----CC--H
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CC--H
Confidence            334458889999999 9999999999988532      246889999999887 9999999999999874     23  4


Q ss_pred             HHHHHHHHHHHhc---------CCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHh--------cCHHHHHHHH
Q 024043          113 RYYKEIAELYESE---------HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL--------EQYHKSIEIY  175 (273)
Q Consensus       113 ~~l~~lg~~~~~~---------g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~--------g~y~~A~~~~  175 (273)
                      .++.++|.++...         |++++|+.+|++|+++....      ..++..+|.++..+        |+|++|+..|
T Consensus       171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~  244 (474)
T 4abn_A          171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD------GRSWYILGNAYLSLYFNTGQNPKISQQALSAY  244 (474)
T ss_dssp             HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence            8999999999999         99999999999999986432      46799999999999        9999999999


Q ss_pred             HHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHH-------HH--HHhhcCHhHHHHHHHhhhccC
Q 024043          176 EEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDI-------AA--SMDEEDIAKFTDVVKEFDSMT  245 (273)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~l-------l~--a~~~~d~~~~~~~~~~~~~~~  245 (273)
                      ++++...+..    ......++++|.++...|++.+|...+++...+       ..  +.-......+.+++..|..+.
T Consensus       245 ~~al~~~p~~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~~  319 (474)
T 4abn_A          245 AQAEKVDRKA----SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTK  319 (474)
T ss_dssp             HHHHHHCGGG----GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred             HHHHHhCCCc----ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9998765411    123357788999999999999999999987521       00  111233457778888776663

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.52  E-value=2.5e-12  Score=109.45  Aligned_cols=162  Identities=11%  Similarity=0.024  Sum_probs=107.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcC------------
Q 024043           40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIG------------  106 (273)
Q Consensus        40 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g------------  106 (273)
                      |.++...|++++|+.+|.++..+...      ...++..+|.++... ++++|+.++++++.......            
T Consensus        62 ~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (327)
T 3cv0_A           62 GLTQAENEKDGLAIIALNHARMLDPK------DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVD  135 (327)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC----------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCcC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHH
Confidence            56677777777777777777765321      123455555555444 56666666655554321111            


Q ss_pred             -----------------ChhH--------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHH
Q 024043          107 -----------------RLSM--------------AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCK  155 (273)
Q Consensus       107 -----------------~~~~--------------~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~  155 (273)
                                       ++..              ...++..+|.++...|++++|+.++++++++.+.      ...++
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~  209 (327)
T 3cv0_A          136 IDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD------DAQLW  209 (327)
T ss_dssp             ----------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHH
T ss_pred             HHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------cHHHH
Confidence                             1111              1456778888888888888888888888877432      13567


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          156 QKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       156 ~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      ..+|.++...|++++|+.+|++++...+.+       ...+..++.++...|++..|...+++..
T Consensus       210 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~a~  267 (327)
T 3cv0_A          210 NKLGATLANGNRPQEALDAYNRALDINPGY-------VRVMYNMAVSYSNMSQYDLAAKQLVRAI  267 (327)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            888888888888888888888887544332       2355677888888888888888887764

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.52  E-value=8.9e-12  Score=100.16  Aligned_cols=170  Identities=9%  Similarity=0.037  Sum_probs=134.1

Q ss_pred             CCHHHHHHHHHH--------------HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc--cCHHH
Q 024043           27 SKYEDAADLFDK--------------AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK--TSSNE   90 (273)
Q Consensus        27 ~~~~~A~~~~~~--------------a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~--~~~~e   90 (273)
                      +++++|..+|.+              .|.+|...|++++|..+|.++......      ...++..+|.++..  .++++
T Consensus        22 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~~   95 (225)
T 2vq2_A           22 QDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD------SAEINNNYGWFLCGRLNRPAE   95 (225)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHTTTCCHHH
T ss_pred             hhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHhcCcHHH
Confidence            455566555554              477899999999999999999987432      23567888888854  49999


Q ss_pred             HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHH
Q 024043           91 AISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHK  170 (273)
Q Consensus        91 A~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~  170 (273)
                      |+.++++++.    .+.......++..+|.++...|++++|+.+|+++++.....      ..++..+|.++...|++++
T Consensus        96 A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~  165 (225)
T 2vq2_A           96 SMAYFDKALA----DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF------PPAFKELARTKMLAGQLGD  165 (225)
T ss_dssp             HHHHHHHHHT----STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHc----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------chHHHHHHHHHHHcCCHHH
Confidence            9999999987    33444456789999999999999999999999999875432      4678999999999999999


Q ss_pred             HHHHHHHHHHHHh-ccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043          171 SIEIYEEIARQSL-NNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY  219 (273)
Q Consensus       171 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~  219 (273)
                      |+.+|++++...+ .+.       ..+..++.++...|+...|...++..
T Consensus       166 A~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~a~~~~~~~  208 (225)
T 2vq2_A          166 ADYYFKKYQSRVEVLQA-------DDLLLGWKIAKALGNAQAAYEYEAQL  208 (225)
T ss_dssp             HHHHHHHHHHHHCSCCH-------HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCH-------HHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            9999999987655 332       23455667788899998887777664

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.52  E-value=3.8e-13  Score=104.79  Aligned_cols=167  Identities=10%  Similarity=0.071  Sum_probs=137.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCCh
Q 024043           30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL  108 (273)
Q Consensus        30 ~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~  108 (273)
                      +.....+...|.++...|++++|+..|.++......      ...++..+|.++... ++++|+.++++++.+...    
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----   74 (186)
T 3as5_A            5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF------DVDVALHLGIAYVKTGAVDRGTELLERSLADAPD----   74 (186)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred             chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----
Confidence            455677888899999999999999999998765321      256788899999777 999999999999987432    


Q ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchh
Q 024043          109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLL  188 (273)
Q Consensus       109 ~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~  188 (273)
                        ...++..+|.++...|++++|+.++++++.+....      ..++..+|.++...|++++|+++|++++...+.+   
T Consensus        75 --~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---  143 (186)
T 3as5_A           75 --NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN------FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE---  143 (186)
T ss_dssp             --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred             --CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh------HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc---
Confidence              24688999999999999999999999999885432      3678999999999999999999999997654433   


Q ss_pred             hhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 024043          189 KYGVKGHLLNAGICQLCKGDVVAITNALERYQD  221 (273)
Q Consensus       189 ~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~  221 (273)
                          ...+..++.++...|++.+|...+++...
T Consensus       144 ----~~~~~~la~~~~~~~~~~~A~~~~~~~~~  172 (186)
T 3as5_A          144 ----GKVHRAIAFSYEQMGRHEEALPHFKKANE  172 (186)
T ss_dssp             ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ----hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                24567889999999999999999988643

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.51  E-value=1.9e-12  Score=105.96  Aligned_cols=172  Identities=13%  Similarity=0.036  Sum_probs=135.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 024043           38 KAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYK  116 (273)
Q Consensus        38 ~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~  116 (273)
                      ..|..+...|+|++|+..|.+++..+...   .....++..+|.+|... ++++|+..|++++..++....   ...++.
T Consensus         9 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~---~~~a~~   82 (225)
T 2yhc_A            9 ATAQQKLQDGNWRQAITQLEALDNRYPFG---PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN---IDYVMY   82 (225)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTTS---TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT---HHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc---HHHHHH
Confidence            44788888999999999999999865322   23456788899999877 999999999999998875443   345667


Q ss_pred             HHHHHHHh------------------cCCHHHHHHHHHHHHHHHhccCCcccH-----------HHHHHHHHHHHHHhcC
Q 024043          117 EIAELYES------------------EHNIEQTIVFFEKAADMFQNEEVTTSA-----------NQCKQKVAQYAAELEQ  167 (273)
Q Consensus       117 ~lg~~~~~------------------~g~~~~A~~~y~~Al~~~~~~~~~~~~-----------~~~~~~~a~~~~~~g~  167 (273)
                      .+|.++..                  .|++++|+..|+++++.++.......+           ......+|.++...|+
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~  162 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA  162 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            77777654                  579999999999999998876532211           1122577889999999


Q ss_pred             HHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043          168 YHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY  219 (273)
Q Consensus       168 y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~  219 (273)
                      |++|+..|++++...++++    .....++.+|.++...|++..|...++..
T Consensus       163 ~~~A~~~~~~~l~~~p~~~----~~~~a~~~l~~~~~~~g~~~~A~~~~~~l  210 (225)
T 2yhc_A          163 WVAVVNRVEGMLRDYPDTQ----ATRDALPLMENAYRQMQMNAQAEKVAKII  210 (225)
T ss_dssp             HHHHHHHHHHHHHHSTTSH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCcCCC----ccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            9999999999998777653    23457888999999999999999888763

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.51  E-value=2.5e-13  Score=120.49  Aligned_cols=155  Identities=9%  Similarity=0.033  Sum_probs=130.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-C-HHHHHHHHHHHHHHHHhcCChhH
Q 024043           33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-S-SNEAISCLEQAVNMFCDIGRLSM  110 (273)
Q Consensus        33 ~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~-~~eA~~~~~~Al~~~~~~g~~~~  110 (273)
                      .+.+...|.++...|++++|+.+|.+++.+...      -..++...|.++... + +++|+.+|++|+.+..+.     
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~------~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~-----  165 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA------NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN-----  165 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC-----
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc------CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC-----
Confidence            456677899999999999999999999987532      246888999999877 5 999999999999987654     


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhh
Q 024043          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY  190 (273)
Q Consensus       111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~  190 (273)
                       ..+|.++|.++..+|++++|+.+|++|+++....      ..++..+|.++..+|++++|+.+|++++...+.+.    
T Consensus       166 -~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~------~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~----  234 (382)
T 2h6f_A          166 -YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN------YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNN----  234 (382)
T ss_dssp             -HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH----
T ss_pred             -HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH----
Confidence             4589999999999999999999999999985432      47899999999999999999999999987666542    


Q ss_pred             chhhHHHHHHHHHHh-cCCHHHH
Q 024043          191 GVKGHLLNAGICQLC-KGDVVAI  212 (273)
Q Consensus       191 ~~~~~~~~~gl~~l~-~gd~~~A  212 (273)
                         ..+++.|.++.. .|....|
T Consensus       235 ---~a~~~lg~~l~~l~~~~~eA  254 (382)
T 2h6f_A          235 ---SVWNQRYFVISNTTGYNDRA  254 (382)
T ss_dssp             ---HHHHHHHHHHHHTTCSCSHH
T ss_pred             ---HHHHHHHHHHHHhcCcchHH
Confidence               367788888887 5554666

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.51  E-value=4.6e-12  Score=113.06  Aligned_cols=178  Identities=16%  Similarity=0.104  Sum_probs=111.9

Q ss_pred             CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHH---HH---------HHHHHHHH
Q 024043           27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKH---EA---------AQAYVDAA   80 (273)
Q Consensus        27 ~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~---~a---------a~~~~~~~   80 (273)
                      +++++|...|.++              |.+|...|++++|..+|.++..+..   +..   ..         ...+...|
T Consensus        74 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a  150 (450)
T 2y4t_A           74 GKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP---SENEEKEAQSQLIKSDEMQRLRSQA  150 (450)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC---CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CChhhHHHHHHHHHHHHHHHHHHHH
Confidence            5666666666553              4456666666666666666654321   111   00         11123335


Q ss_pred             HHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHH
Q 024043           81 HCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVA  159 (273)
Q Consensus        81 ~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a  159 (273)
                      .++... ++++|+.+|++++.+...      ...++..+|.+|...|++++|+.+|++++++.+..      ..++..+|
T Consensus       151 ~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~  218 (450)
T 2y4t_A          151 LNAFGSGDYTAAIAFLDKILEVCVW------DAELRELRAECFIKEGEPRKAISDLKAASKLKNDN------TEAFYKIS  218 (450)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC------HHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHH
Confidence            555544 777777777777765432      23578889999999999999999999999886432      46789999


Q ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhccchhhhch-----hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043          160 QYAAELEQYHKSIEIYEEIARQSLNNNLLKYGV-----KGHLLNAGICQLCKGDVVAITNALERY  219 (273)
Q Consensus       160 ~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~gl~~l~~gd~~~A~~~~~~~  219 (273)
                      .++...|++++|+..|++++...+++.......     .......+.++...|++..|...+++.
T Consensus       219 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~  283 (450)
T 2y4t_A          219 TLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV  283 (450)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999999999999975544332100000     001122355566666666666666554

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.51  E-value=1.9e-12  Score=115.35  Aligned_cols=174  Identities=12%  Similarity=0.162  Sum_probs=140.9

Q ss_pred             cCCHHHHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHH
Q 024043           46 AKSWDKAGATYVKLANCHLKLES-----------KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAAR  113 (273)
Q Consensus        46 ~~~~~~A~~~~~~a~~~~~~~~~-----------~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~  113 (273)
                      .|+|++|++.|.++++..+..++           ......++.++|.+|... ++++|++++.+++.+....++....+.
T Consensus        17 ~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   96 (434)
T 4b4t_Q           17 EKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKV   96 (434)
T ss_dssp             HTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHH
Confidence            34555555555555544332221           123445678899999877 999999999999999999999888999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchh
Q 024043          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK  193 (273)
Q Consensus       114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~  193 (273)
                      +...+|.++...|++++|+.++++++.+....++......++.++|.++...|+|.+|+.+++++.....+.. .+....
T Consensus        97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~-~~~~~~  175 (434)
T 4b4t_Q           97 LKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD-DKPSLV  175 (434)
T ss_dssp             HHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS-CSTHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc-cchhHH
Confidence            9999999999999999999999999999999888777889999999999999999999999999975433322 233455


Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          194 GHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       194 ~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      ..+...|.++...||+.+|...+++..
T Consensus       176 ~~~~~~~~~~~~~~~~~~A~~~~~~al  202 (434)
T 4b4t_Q          176 DVHLLESKVYHKLRNLAKSKASLTAAR  202 (434)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            678888999999999999999988755

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.50  E-value=3.7e-12  Score=106.69  Aligned_cols=182  Identities=12%  Similarity=0.178  Sum_probs=143.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc----c-CHHHHHHHHHHHHHHHHhcCChh
Q 024043           35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK----T-SSNEAISCLEQAVNMFCDIGRLS  109 (273)
Q Consensus        35 ~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~----~-~~~eA~~~~~~Al~~~~~~g~~~  109 (273)
                      .+...|.++...|++++|+.+|.++++    .++    ..++..+|.+|..    . ++++|+.+|++|+++    +   
T Consensus         8 a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~---   72 (273)
T 1ouv_A            8 ELVGLGAKSYKEKDFTQAKKYFEKACD----LKE----NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----N---   72 (273)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH----TTC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T---
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHH----CCC----HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----C---
Confidence            455679999999999999999999987    334    3578889999987    6 999999999999876    3   


Q ss_pred             HHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHH
Q 024043          110 MAARYYKEIAELYES----EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAE----LEQYHKSIEIYEEIARQ  181 (273)
Q Consensus       110 ~~a~~l~~lg~~~~~----~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~----~g~y~~A~~~~~~~~~~  181 (273)
                       .+.++.++|.+|..    .+++++|+.+|++|++.    +    ...++..+|.++..    .+++++|+++|++++..
T Consensus        73 -~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~  143 (273)
T 1ouv_A           73 -YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----K----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL  143 (273)
T ss_dssp             -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred             -CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----C----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc
Confidence             35789999999999    99999999999999986    2    24679999999999    99999999999999752


Q ss_pred             HhccchhhhchhhHHHHHHHHHHh----cCCHHHHHHHHHHHH---------HHHHHHhh--cCHhHHHHHHHhhhccCC
Q 024043          182 SLNNNLLKYGVKGHLLNAGICQLC----KGDVVAITNALERYQ---------DIAASMDE--EDIAKFTDVVKEFDSMTP  246 (273)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~gl~~l~----~gd~~~A~~~~~~~~---------~ll~a~~~--~d~~~~~~~~~~~~~~~~  246 (273)
                        +       ....+.++|.++..    .+|+.+|...+++..         .+-..+..  +....+.+++..|.....
T Consensus       144 --~-------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~  214 (273)
T 1ouv_A          144 --N-------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACE  214 (273)
T ss_dssp             --T-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH
T ss_pred             --C-------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh
Confidence              2       22356788988887    899999999998754         11112222  124456666666666666


Q ss_pred             Cch
Q 024043          247 LDP  249 (273)
Q Consensus       247 ld~  249 (273)
                      ++|
T Consensus       215 ~~~  217 (273)
T 1ouv_A          215 LEN  217 (273)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            555

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.49  E-value=1.8e-12  Score=115.79  Aligned_cols=233  Identities=15%  Similarity=0.082  Sum_probs=166.8

Q ss_pred             HhhHHHHHHHHHHhhccc---------cCC-CCCHHHHHHHHHHH-----------------------------HHHHHH
Q 024043            5 IARAEEFEKKAEKKLNGW---------GLF-GSKYEDAADLFDKA-----------------------------ANSFKL   45 (273)
Q Consensus         5 ~~~a~~l~~~Aek~~k~~---------~~~-~~~~~~A~~~~~~a-----------------------------~~~~~~   45 (273)
                      .++|.+++.++-+.-...         .+. .+++++|...|.++                             |.++..
T Consensus        76 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  155 (450)
T 2y4t_A           76 SKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFG  155 (450)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567777777776654210         112 37888888888765                             445888


Q ss_pred             cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh
Q 024043           46 AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES  124 (273)
Q Consensus        46 ~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~  124 (273)
                      .|++++|+.+|.++......      ...++..+|.+|... ++++|+.+|++++......      ..++..+|.++..
T Consensus       156 ~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~  223 (450)
T 2y4t_A          156 SGDYTAAIAFLDKILEVCVW------DAELRELRAECFIKEGEPRKAISDLKAASKLKNDN------TEAFYKISTLYYQ  223 (450)
T ss_dssp             HTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC------HHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Confidence            99999999999999876421      246788899999877 9999999999999885432      4689999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHhccCCcccH------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHH
Q 024043          125 EHNIEQTIVFFEKAADMFQNEEVTTSA------NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLN  198 (273)
Q Consensus       125 ~g~~~~A~~~y~~Al~~~~~~~~~~~~------~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (273)
                      .|++++|+.+|++++.+..........      ...+..+|.++...|++++|+.+|++++...+.++.   .....+..
T Consensus       224 ~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~~~~~  300 (450)
T 2y4t_A          224 LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAE---YTVRSKER  300 (450)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHH---HHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchH---HHHHHHHH
Confidence            999999999999999875543211100      011244599999999999999999999875554321   12346678


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHH-----------HHHHHHhhcCHhHHHHHHHhhhccCCCchhHHHH
Q 024043          199 AGICQLCKGDVVAITNALERYQ-----------DIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTL  254 (273)
Q Consensus       199 ~gl~~l~~gd~~~A~~~~~~~~-----------~ll~a~~~~d~~~~~~~~~~~~~~~~ld~~~~~~  254 (273)
                      +|.++...|++..|...+++..           .+...+  .....+.+++..|..+..++|-...+
T Consensus       301 l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~--~~~~~~~~A~~~~~~al~~~p~~~~~  365 (450)
T 2y4t_A          301 ICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY--LIEEMYDEAIQDYETAQEHNENDQQI  365 (450)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH--HHTTCHHHHHHHHHHHHTTSSSCHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH--HHhcCHHHHHHHHHHHHHhCcchHHH
Confidence            8999999999999999988864           122222  11234566666666666665554433

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.48  E-value=2.5e-12  Score=107.01  Aligned_cols=198  Identities=14%  Similarity=0.031  Sum_probs=155.0

Q ss_pred             hHhhHHHHHHHHHHhhcc-c-c-------CC-CCCHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHH
Q 024043            4 QIARAEEFEKKAEKKLNG-W-G-------LF-GSKYEDAADLFDKA-----------------ANSFKLAKSWDKAGATY   56 (273)
Q Consensus         4 ~~~~a~~l~~~Aek~~k~-~-~-------~~-~~~~~~A~~~~~~a-----------------~~~~~~~~~~~~A~~~~   56 (273)
                      ..++|.+++.++-+.-.. . .       ++ .+++++|...|.++                 |.+|...|++++|+.+|
T Consensus        18 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~   97 (272)
T 3u4t_A           18 NYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQY   97 (272)
T ss_dssp             CHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            367888888888775531 1 1       12 38899998888764                 67888999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH-HHHHhcCCHHHHHHH
Q 024043           57 VKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIA-ELYESEHNIEQTIVF  134 (273)
Q Consensus        57 ~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg-~~~~~~g~~~~A~~~  134 (273)
                      .++.+.....      ..++..+|.+|... ++++|+.+|++++.+..      ....++.++| .++.. +++++|+.+
T Consensus        98 ~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~l~~~~~~~-~~~~~A~~~  164 (272)
T 3u4t_A           98 QAAVDRDTTR------LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT------TDPKVFYELGQAYYYN-KEYVKADSS  164 (272)
T ss_dssp             HHHHHHSTTC------THHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC------CCHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred             HHHHhcCccc------HHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC------CcHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            9999875432      35788999999887 99999999999988722      2256889999 66666 799999999


Q ss_pred             HHHHHHHHhccCCcccHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHhccchh-hhchhhHHHHHHHHHHhcCCHH
Q 024043          135 FEKAADMFQNEEVTTSANQCKQKVAQYAAELEQ---YHKSIEIYEEIARQSLNNNLL-KYGVKGHLLNAGICQLCKGDVV  210 (273)
Q Consensus       135 y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~---y~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~~~gl~~l~~gd~~  210 (273)
                      |++++++.+..      ..++..+|.++..+|+   +++|+..|++++......+.. .......+..+|.++...|++.
T Consensus       165 ~~~a~~~~p~~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  238 (272)
T 3u4t_A          165 FVKVLELKPNI------YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV  238 (272)
T ss_dssp             HHHHHHHSTTC------HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHhCccc------hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence            99999986543      4678889999999998   999999999998654332211 1223457778899999999999


Q ss_pred             HHHHHHHHHH
Q 024043          211 AITNALERYQ  220 (273)
Q Consensus       211 ~A~~~~~~~~  220 (273)
                      +|...+++..
T Consensus       239 ~A~~~~~~al  248 (272)
T 3u4t_A          239 KADAAWKNIL  248 (272)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999864

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.48  E-value=2.6e-12  Score=118.94  Aligned_cols=197  Identities=14%  Similarity=0.117  Sum_probs=157.8

Q ss_pred             HhhHHHHHHHHHHhhcc----c-----cCC-CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHH
Q 024043            5 IARAEEFEKKAEKKLNG----W-----GLF-GSKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLA   60 (273)
Q Consensus         5 ~~~a~~l~~~Aek~~k~----~-----~~~-~~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~   60 (273)
                      .++|.+++.++-+....    +     .++ .|++++|..+|.++              +.+|...|++++|+..|.++.
T Consensus       355 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  434 (597)
T 2xpi_A          355 KNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAA  434 (597)
T ss_dssp             HHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            56778888777654321    1     122 38999999999875              567888999999999999998


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043           61 NCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAA  139 (273)
Q Consensus        61 ~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al  139 (273)
                      .....      -..++..++.+|... ++++|+++|++++++...      -..++..+|.++...|++++|+++|++++
T Consensus       435 ~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  502 (597)
T 2xpi_A          435 RLFQG------THLPYLFLGMQHMQLGNILLANEYLQSSYALFQY------DPLLLNELGVVAFNKSDMQTAINHFQNAL  502 (597)
T ss_dssp             HTTTT------CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HhCcc------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            76432      235778889998777 999999999999987432      23579999999999999999999999999


Q ss_pred             HHHhccCC-cccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHH
Q 024043          140 DMFQNEEV-TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER  218 (273)
Q Consensus       140 ~~~~~~~~-~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~  218 (273)
                      ++.+..+. +.....++..+|.++...|++++|++.|++++...+.+       ...+..++.++...|++++|.+.+++
T Consensus       503 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~  575 (597)
T 2xpi_A          503 LLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND-------ANVHTAIALVYLHKKIPGLAITHLHE  575 (597)
T ss_dssp             HHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC-------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            99887543 33336789999999999999999999999998655443       24677889999999999999999988


Q ss_pred             HH
Q 024043          219 YQ  220 (273)
Q Consensus       219 ~~  220 (273)
                      ..
T Consensus       576 ~l  577 (597)
T 2xpi_A          576 SL  577 (597)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.47  E-value=8.1e-13  Score=107.91  Aligned_cols=166  Identities=14%  Similarity=0.146  Sum_probs=120.3

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCCh
Q 024043           30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL  108 (273)
Q Consensus        30 ~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~  108 (273)
                      +-....+...|..+...|++++|+..|.+++.....      ...++..+|.++... ++++|+.+|++++.+...    
T Consensus        20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----   89 (243)
T 2q7f_A           20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE------DAIPYINFANLLSSVNELERALAFYDKALELDSS----   89 (243)
T ss_dssp             ----------------------CCTTHHHHHTTCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred             hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc----
Confidence            344556667799999999999999999999874321      256788899999777 999999999999987543    


Q ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchh
Q 024043          109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLL  188 (273)
Q Consensus       109 ~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~  188 (273)
                        ...++..+|.++...|++++|+.+|++++++....      ..++..+|.++...|++++|+.+|++++...+.+   
T Consensus        90 --~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---  158 (243)
T 2q7f_A           90 --AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN------GDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND---  158 (243)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC---
T ss_pred             --chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc---
Confidence              25688999999999999999999999999986432      3578999999999999999999999998654433   


Q ss_pred             hhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          189 KYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       189 ~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                          ...+..+|.++...|++..|...+++..
T Consensus       159 ----~~~~~~l~~~~~~~~~~~~A~~~~~~~~  186 (243)
T 2q7f_A          159 ----TEARFQFGMCLANEGMLDEALSQFAAVT  186 (243)
T ss_dssp             ----HHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                2356778999999999999999998864

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.47  E-value=1.1e-13  Score=106.50  Aligned_cols=130  Identities=11%  Similarity=0.079  Sum_probs=106.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 024043           39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKE  117 (273)
Q Consensus        39 a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~  117 (273)
                      .|.+++..|++++|+..+.++....      ......+..+|.+|... ++++|+++|++++++.+..      +.++.+
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~------p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~------~~a~~~   70 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSP------RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD------PKAHRF   70 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSH------HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHH
Confidence            5778888899999999998877643      44456777899999887 9999999999999986543      569999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHH-HHHHHHHhccc
Q 024043          118 IAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIY-EEIARQSLNNN  186 (273)
Q Consensus       118 lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~-~~~~~~~~~~~  186 (273)
                      +|.++...|++++|+.+|++|+++.+..      ..++.++|.++...|++++|++.| ++++...++++
T Consensus        71 lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~  134 (150)
T 4ga2_A           71 LGLLYELEENTDKAVECYRRSVELNPTQ------KDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSP  134 (150)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHcCchHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCH
Confidence            9999999999999999999999985432      468999999999999999988865 88887766653

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.47  E-value=7.1e-13  Score=98.97  Aligned_cols=106  Identities=14%  Similarity=0.184  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC-
Q 024043           70 HEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV-  147 (273)
Q Consensus        70 ~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~-  147 (273)
                      .+.|.++.++|+++... ++++|+++|++|+++.+..      +.++.++|.+|..+|++++|+++|++|+++.+.... 
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~------~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~   78 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN------ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD   78 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh
Confidence            45677778888887666 8888888888888775432      457888888888888888888888888888776543 


Q ss_pred             cccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 024043          148 TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ  181 (273)
Q Consensus       148 ~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~  181 (273)
                      ....+.++.++|.++..+|+|++|+++|++++..
T Consensus        79 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           79 YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3455677888888888888888888888887643

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.46  E-value=1.8e-12  Score=102.10  Aligned_cols=162  Identities=11%  Similarity=0.078  Sum_probs=129.7

Q ss_pred             HHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCccc
Q 024043           72 AAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTS  150 (273)
Q Consensus        72 aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~  150 (273)
                      .+.+|.++|.+|... ++++|+++|++++++.+..      +.++..+|.++...|++++|+..+.+++......     
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~-----   72 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN------VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS-----   72 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-----
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh-----
Confidence            467899999999877 9999999999999986543      4689999999999999999999999998875432     


Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHH--------
Q 024043          151 ANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDI--------  222 (273)
Q Consensus       151 ~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~l--------  222 (273)
                       ..++..+|.++...++++.|++.+.++....+.+       ...+..+|.++...|++++|...+++...+        
T Consensus        73 -~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~  144 (184)
T 3vtx_A           73 -AEAYYILGSANFMIDEKQAAIDALQRAIALNTVY-------ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAY  144 (184)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-------hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHH
Confidence             4678899999999999999999999998655543       235678899999999999999999986511        


Q ss_pred             -HHHHhhcCHhHHHHHHHhhhccCCCchhHH
Q 024043          223 -AASMDEEDIAKFTDVVKEFDSMTPLDPWKT  252 (273)
Q Consensus       223 -l~a~~~~d~~~~~~~~~~~~~~~~ld~~~~  252 (273)
                       .-+........+.+++..|.....+||-..
T Consensus       145 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          145 QSIGLAYEGKGLRDEAVKYFKKALEKEEKKA  175 (184)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence             001112224457788888888888888654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.46  E-value=2.2e-12  Score=105.21  Aligned_cols=164  Identities=15%  Similarity=0.218  Sum_probs=125.8

Q ss_pred             hHHHHHHHHHHhhccccCCCCCHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHH
Q 024043            7 RAEEFEKKAEKKLNGWGLFGSKYEDAADLFDK---------------AANSFKLAKSWDKAGATYVKLANCHLKLESKHE   71 (273)
Q Consensus         7 ~a~~l~~~Aek~~k~~~~~~~~~~~A~~~~~~---------------a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~   71 (273)
                      +|..++..|.-.++     .++|++|...|.+               .|.++...|++++|+.+|.+++....      .
T Consensus         6 ~~~~~~~~g~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------~   74 (228)
T 4i17_A            6 DPNQLKNEGNDALN-----AKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY------N   74 (228)
T ss_dssp             CHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC------S
T ss_pred             CHHHHHHHHHHHHH-----ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc------c
Confidence            45556666655544     2355555555554               47788899999999999999996532      2


Q ss_pred             HHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcc
Q 024043           72 AAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR-LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT  149 (273)
Q Consensus        72 aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~-~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~  149 (273)
                      ...++..+|.+|... ++++|+.+|++++.+.+.... ....+.++.++|.++...|++++|+.+|++|+++.+.    .
T Consensus        75 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~  150 (228)
T 4i17_A           75 LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK----K  150 (228)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH----H
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC----c
Confidence            456788999999888 999999999999998765432 2345678999999999999999999999999987321    0


Q ss_pred             cHHHHHHHHHHHHHHhcCH---------------------------HHHHHHHHHHHHHHhcc
Q 024043          150 SANQCKQKVAQYAAELEQY---------------------------HKSIEIYEEIARQSLNN  185 (273)
Q Consensus       150 ~~~~~~~~~a~~~~~~g~y---------------------------~~A~~~~~~~~~~~~~~  185 (273)
                      ....++..+|.++...|+.                           ++|+.+|++++...+++
T Consensus       151 ~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~  213 (228)
T 4i17_A          151 WKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNR  213 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            0357888999999888887                           88888888887665554

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.45  E-value=1.1e-12  Score=118.13  Aligned_cols=174  Identities=11%  Similarity=-0.017  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCCh
Q 024043           33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLES---KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL  108 (273)
Q Consensus        33 ~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~  108 (273)
                      +..|+..|.++...|++++|+++|.+|+++.+....   ....+.+|.++|.+|... ++++|+.+|++++.+.+....+
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~  130 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP  130 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence            456778899999999999999999999999876542   345677899999999888 9999999999999999887653


Q ss_pred             h--HHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHH
Q 024043          109 S--MAARYYKEIAELYESE--HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAA---ELEQYHKSIEIYEEIARQ  181 (273)
Q Consensus       109 ~--~~a~~l~~lg~~~~~~--g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~---~~g~y~~A~~~~~~~~~~  181 (273)
                      .  ..+.++.++|.++...  ++|++|+++|++|+++.+..      ..++..+|.++.   ..+++++|++.|++++..
T Consensus       131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~------~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l  204 (472)
T 4g1t_A          131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN------PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL  204 (472)
T ss_dssp             SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence            2  3467788888777654  57999999999999985432      244556665544   346777888888888755


Q ss_pred             HhccchhhhchhhHHHHHHHHH----HhcCCHHHHHHHHHHH
Q 024043          182 SLNNNLLKYGVKGHLLNAGICQ----LCKGDVVAITNALERY  219 (273)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~gl~~----l~~gd~~~A~~~~~~~  219 (273)
                      .+.+.       ..+..+|.++    ...|++..|..++++.
T Consensus       205 ~p~~~-------~~~~~l~~~~~~~~~~~~~~~~a~~~~~~a  239 (472)
T 4g1t_A          205 NPDNQ-------YLKVLLALKLHKMREEGEEEGEGEKLVEEA  239 (472)
T ss_dssp             CSSCH-------HHHHHHHHHHHHCC------CHHHHHHHHH
T ss_pred             CCcch-------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            44332       1222333322    2344556666666654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.44  E-value=3.8e-12  Score=121.55  Aligned_cols=133  Identities=10%  Similarity=0.159  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC
Q 024043           69 KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV  147 (273)
Q Consensus        69 ~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~  147 (273)
                      ...-+.+|.++|.+|... ++++|+.+|++|+++....      +.++.++|.+|..+|++++|+.+|++|+++...   
T Consensus         5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~---   75 (723)
T 4gyw_A            5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF------AAAHSNLASVLQQQGKLQEALMHYKEAIRISPT---   75 (723)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---
Confidence            345678999999999888 9999999999999986543      568999999999999999999999999998543   


Q ss_pred             cccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          148 TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       148 ~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                         ...++.++|.++..+|++++|++.|++++...+++       ...+.++|.++...|++++|..++++..
T Consensus        76 ---~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~-------~~a~~~Lg~~~~~~g~~~eAi~~~~~Al  138 (723)
T 4gyw_A           76 ---FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF-------ADAHSNLASIHKDSGNIPEAIASYRTAL  138 (723)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence               25789999999999999999999999998765543       3467899999999999999999999865

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.44  E-value=1.2e-11  Score=111.86  Aligned_cols=133  Identities=10%  Similarity=0.039  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHhc---c-CHHHHHHHHHHHHHHHHhc-----CC---hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043           74 QAYVDAAHCYKK---T-SSNEAISCLEQAVNMFCDI-----GR---LSMAARYYKEIAELYESEHNIEQTIVFFEKAADM  141 (273)
Q Consensus        74 ~~~~~~~~~~~~---~-~~~eA~~~~~~Al~~~~~~-----g~---~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~  141 (273)
                      ..+...|.++..   . ++++|+.+|++++..+...     ++   ....+.++..+|.++...|++++|+.+|+++++.
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~  266 (514)
T 2gw1_A          187 DKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL  266 (514)
T ss_dssp             HHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence            344444554432   3 7788888888888754322     11   1456778888888888888888888888888876


Q ss_pred             HhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          142 FQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       142 ~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      ...       ..++..+|.++...|++++|+..|++++...+.+       ...+..++.++...|++..|...+++..
T Consensus       267 ~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~  331 (514)
T 2gw1_A          267 FPR-------VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNN-------SSVYYHRGQMNFILQNYDQAGKDFDKAK  331 (514)
T ss_dssp             CCC-------HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTC-------THHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred             Ccc-------HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            432       5677788888888888888888888876433322       2355667778888888888888877754

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.44  E-value=5.6e-13  Score=121.45  Aligned_cols=168  Identities=12%  Similarity=0.076  Sum_probs=137.3

Q ss_pred             CCH-HHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc------
Q 024043           27 SKY-EDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK------   85 (273)
Q Consensus        27 ~~~-~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~------   85 (273)
                      ++| ++|..+|.++              |.+|...|++++|+.+|.+++++.   .+    ..++.++|.++..      
T Consensus       116 g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~----~~~~~~lg~~~~~~~~~~~  188 (474)
T 4abn_A          116 PDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC---KN----KVSLQNLSMVLRQLQTDSG  188 (474)
T ss_dssp             SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC---CC----HHHHHHHHHHHTTCCCSCH
T ss_pred             cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CC----HHHHHHHHHHHHHhccCCh
Confidence            899 9999999876              678999999999999999999874   22    3788999999965      


Q ss_pred             ----cCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHHHhccCCcccHHH
Q 024043           86 ----TSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE--------HNIEQTIVFFEKAADMFQNEEVTTSANQ  153 (273)
Q Consensus        86 ----~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~--------g~~~~A~~~y~~Al~~~~~~~~~~~~~~  153 (273)
                          .++++|+.+|++|+.+....      +.++.++|.++...        |++++|+.+|++|+++....   .....
T Consensus       189 ~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~  259 (474)
T 4abn_A          189 DEHSRHVMDSVRQAKLAVQMDVLD------GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA---SSNPD  259 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG---GGCHH
T ss_pred             hhhhhhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc---ccCHH
Confidence                47899999999999986543      45899999999998        99999999999999985421   13357


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHH
Q 024043          154 CKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALE  217 (273)
Q Consensus       154 ~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~  217 (273)
                      ++.++|.++..+|+|++|++.|++++...+++.       ..+..++.++...|++.+|.+.+.
T Consensus       260 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-------~a~~~l~~~~~~lg~~~eAi~~~~  316 (474)
T 4abn_A          260 LHLNRATLHKYEESYGEALEGFSQAAALDPAWP-------EPQQREQQLLEFLSRLTSLLESKG  316 (474)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            899999999999999999999999987655542       356677777777777666655443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.43  E-value=5.2e-12  Score=94.19  Aligned_cols=109  Identities=17%  Similarity=0.239  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcC-
Q 024043           29 YEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIG-  106 (273)
Q Consensus        29 ~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g-  106 (273)
                      ..+++..+...|+.+...|+|++|+.+|.+|+++...      -+.++.++|.+|... ++++|+++|++|+++.+... 
T Consensus         4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~------~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~   77 (127)
T 4gcn_A            4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS------NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA   77 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch
Confidence            3456677888999999999999999999999988432      256899999999888 99999999999999998764 


Q ss_pred             ChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 024043          107 RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ  143 (273)
Q Consensus       107 ~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~  143 (273)
                      .....+.++.++|.++..+|++++|+++|++|+.+.+
T Consensus        78 ~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~  114 (127)
T 4gcn_A           78 DYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR  114 (127)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence            5677899999999999999999999999999998754

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.42  E-value=3.5e-13  Score=121.33  Aligned_cols=155  Identities=9%  Similarity=0.040  Sum_probs=113.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHHHHhcCCHHHHHH
Q 024043           58 KLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR---LSMAARYYKEIAELYESEHNIEQTIV  133 (273)
Q Consensus        58 ~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~---~~~~a~~l~~lg~~~~~~g~~~~A~~  133 (273)
                      ..+....+..+....+..|+.+|.++... ++++|+++|++|+++.+..+.   ....+.++.++|.+|..+|++++|+.
T Consensus        36 ~~~~~~~~~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~  115 (472)
T 4g1t_A           36 DKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQI  115 (472)
T ss_dssp             HHHHHHTTSCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHH
Confidence            33333334555666788999999999777 999999999999999886543   33457789999999999999999999


Q ss_pred             HHHHHHHHHhccCCc--ccHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHh---c
Q 024043          134 FFEKAADMFQNEEVT--TSANQCKQKVAQYAAELE--QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC---K  206 (273)
Q Consensus       134 ~y~~Al~~~~~~~~~--~~~~~~~~~~a~~~~~~g--~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~---~  206 (273)
                      +|++++++.+....+  ...+.++...|.++...|  +|++|+++|++++...++++       ..+..++.++..   .
T Consensus       116 ~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~-------~~~~~~~~~~~~l~~~  188 (472)
T 4g1t_A          116 YVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNP-------EFTSGLAIASYRLDNW  188 (472)
T ss_dssp             HHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCH-------HHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHhcCc
Confidence            999999999876432  344677888888777654  79999999999987766553       234444544333   3


Q ss_pred             CCHHHHHHHHHHH
Q 024043          207 GDVVAITNALERY  219 (273)
Q Consensus       207 gd~~~A~~~~~~~  219 (273)
                      ++...|.+.+++.
T Consensus       189 ~~~~~al~~~~~a  201 (472)
T 4g1t_A          189 PPSQNAIDPLRQA  201 (472)
T ss_dssp             CCCCCTHHHHHHH
T ss_pred             hHHHHHHHHHHHH
Confidence            5555555555543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.42  E-value=1.3e-11  Score=104.99  Aligned_cols=168  Identities=10%  Similarity=-0.011  Sum_probs=132.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHH
Q 024043           34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAA  112 (273)
Q Consensus        34 ~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a  112 (273)
                      +.+...|..+...|++++|+..|.++......      ...++..+|.++... ++++|+.++++++.+....      .
T Consensus        22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~   89 (327)
T 3cv0_A           22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPE------REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD------I   89 (327)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------H
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC------H
Confidence            34445688899999999999999999886422      346777889999877 9999999999999874332      4


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCc-------------------------------------------c
Q 024043          113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT-------------------------------------------T  149 (273)
Q Consensus       113 ~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~-------------------------------------------~  149 (273)
                      .++..+|.++...|++++|+.+|+++++..+.....                                           .
T Consensus        90 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  169 (327)
T 3cv0_A           90 AVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP  169 (327)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC
Confidence            588899999999999999999999988764332111                                           0


Q ss_pred             cHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          150 SANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       150 ~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      ....++..+|.++...|++++|+.+|++++...+.+       ...+..+|.++...|++.+|...+++..
T Consensus       170 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~  233 (327)
T 3cv0_A          170 NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD-------AQLWNKLGATLANGNRPQEALDAYNRAL  233 (327)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            113567888999999999999999999997654433       2356788999999999999999988864

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.41  E-value=1.3e-11  Score=112.80  Aligned_cols=146  Identities=10%  Similarity=0.021  Sum_probs=127.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHH-cC-CHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc--CChhHHHHH
Q 024043           40 ANSFKLAKSWDKAGATYVKLANCHLK-LE-SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI--GRLSMAARY  114 (273)
Q Consensus        40 ~~~~~~~~~~~~A~~~~~~a~~~~~~-~~-~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~--g~~~~~a~~  114 (273)
                      +..++..|+|++|...|++++++.++ +| +....+.++.++|.+|... ++++|+.+++++++++.+.  .+....|..
T Consensus       316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~  395 (490)
T 3n71_A          316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA  395 (490)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            34577899999999999999999874 45 5678999999999999887 9999999999999999764  456778999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-C-CcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          115 YKEIAELYESEHNIEQTIVFFEKAADMFQNE-E-VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       115 l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~-~-~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                      ++++|.+|..+|++++|..+|++|+++++.. | ++.....++..++.++.+++.|.+|...|.++......+
T Consensus       396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~  468 (490)
T 3n71_A          396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNN  468 (490)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999875 4 356677888999999999999999999999986544443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.41  E-value=3.4e-12  Score=115.52  Aligned_cols=174  Identities=14%  Similarity=0.098  Sum_probs=91.0

Q ss_pred             CCHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHH
Q 024043           27 SKYEDAADLFDKA-------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAI   92 (273)
Q Consensus        27 ~~~~~A~~~~~~a-------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~   92 (273)
                      +++++|..+|.++             |.++...|++++|+..|.++.......      ..++..+|.++... ++++|+
T Consensus       251 ~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~  324 (514)
T 2gw1_A          251 NDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNN------SSVYYHRGQMNFILQNYDQAG  324 (514)
T ss_dssp             SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTC------THHHHHHHHHHHHTTCTTHHH
T ss_pred             CCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCC------HHHHHHHHHHHHHhCCHHHHH
Confidence            6777777766653             777777777777777777766543211      22455555555544 556666


Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHH
Q 024043           93 SCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSI  172 (273)
Q Consensus        93 ~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~  172 (273)
                      .+|++++.+....      ..++..+|.++...|++++|+.+|+++++.....      ..++..+|.++...|++++|+
T Consensus       325 ~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~  392 (514)
T 2gw1_A          325 KDFDKAKELDPEN------IFPYIQLACLAYRENKFDDCETLFSEAKRKFPEA------PEVPNFFAEILTDKNDFDKAL  392 (514)
T ss_dssp             HHHHHHHHTCSSC------SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTC------SHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHhChhh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccC------HHHHHHHHHHHHHCCCHHHHH
Confidence            6666655543221      1245555555555555555555555555543321      134555555555555555555


Q ss_pred             HHHHHHHHHHhccchhhhchhhHHHHHHHHHHh---cCCHHHHHHHHHHH
Q 024043          173 EIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC---KGDVVAITNALERY  219 (273)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~---~gd~~~A~~~~~~~  219 (273)
                      .+|++++...+.++...... ..+..+|.++..   .|++..|...+++.
T Consensus       393 ~~~~~a~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~A~~~~~~a  441 (514)
T 2gw1_A          393 KQYDLAIELENKLDGIYVGI-APLVGKATLLTRNPTVENFIEATNLLEKA  441 (514)
T ss_dssp             HHHHHHHHHHHTSSSCSSCS-HHHHHHHHHHHTSCCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhccchHHHHH-HHHHHHHHHHhhhhhcCCHHHHHHHHHHH
Confidence            55555554433332211111 123444555555   55555555555543

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.41  E-value=4.4e-12  Score=102.57  Aligned_cols=162  Identities=11%  Similarity=0.102  Sum_probs=111.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcC
Q 024043           38 KAANSFKLAKSWDKAGATYVKLANCHLKLES----------KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIG  106 (273)
Q Consensus        38 ~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----------~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g  106 (273)
                      .-|..+...|++++|+.+|.+++.+......          .........++|.+|... ++++|+.+|++++.+.+.. 
T Consensus         9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-   87 (208)
T 3urz_A            9 QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNN-   87 (208)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-
Confidence            3466677778888888888888776432110          001111222388888777 9999999999999886543 


Q ss_pred             ChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHhc
Q 024043          107 RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQ--YHKSIEIYEEIARQSLN  184 (273)
Q Consensus       107 ~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~--y~~A~~~~~~~~~~~~~  184 (273)
                           ..++.++|.++...|++++|+.+|++++++.+..      ..++..+|.++...|+  ...+...|.++..    
T Consensus        88 -----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~----  152 (208)
T 3urz_A           88 -----VDCLEACAEMQVCRGQEKDALRMYEKILQLEADN------LAANIFLGNYYYLTAEQEKKKLETDYKKLSS----  152 (208)
T ss_dssp             -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHHHHHHHHHHC---C----
T ss_pred             -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC----
Confidence                 4588899999999999999999999999885432      4678889988877664  4556666666531    


Q ss_pred             cchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043          185 NNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY  219 (273)
Q Consensus       185 ~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~  219 (273)
                      .+    .....+++.|+++...|++.+|..+|++.
T Consensus       153 ~~----~~~~a~~~~g~~~~~~~~~~~A~~~~~~a  183 (208)
T 3urz_A          153 PT----KMQYARYRDGLSKLFTTRYEKARNSLQKV  183 (208)
T ss_dssp             CC----HHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             CC----chhHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            10    11123456788888888888888888875

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.39  E-value=1.1e-11  Score=96.23  Aligned_cols=134  Identities=8%  Similarity=0.026  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHH
Q 024043           34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAA  112 (273)
Q Consensus        34 ~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a  112 (273)
                      ..+...|.++...|++++|..++.++......      ...++..+|.++... ++++|+.++++++.+....      .
T Consensus        43 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~  110 (186)
T 3as5_A           43 DVALHLGIAYVKTGAVDRGTELLERSLADAPD------NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN------F  110 (186)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------H
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh------H
Confidence            34555688999999999999999999887421      245778889998777 9999999999999875432      4


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       113 ~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                      .++..+|.++...|++++|+.+++++++.....      ..++..+|.++...|++++|+.+|++++...+++
T Consensus       111 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  177 (186)
T 3as5_A          111 NVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE------GKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA  177 (186)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence            688999999999999999999999999885322      4678999999999999999999999998766655

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.39  E-value=6.4e-11  Score=98.33  Aligned_cols=181  Identities=6%  Similarity=-0.112  Sum_probs=127.0

Q ss_pred             HhhHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 024043            5 IARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYK   84 (273)
Q Consensus         5 ~~~a~~l~~~Aek~~k~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~   84 (273)
                      .++|.+++.++-+...      .+...-...+...|.++...|++++|+.+|.+++.+...      ...++..+|.+|.
T Consensus        21 ~~~A~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~   88 (275)
T 1xnf_A           21 QEVILARMEQILASRA------LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD------MPEVFNYLGIYLT   88 (275)
T ss_dssp             HHHHHHHHHHHHTSSC------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccc------ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHH
Confidence            4555555555544321      123344566777899999999999999999999987422      2457888999998


Q ss_pred             cc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHH
Q 024043           85 KT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAA  163 (273)
Q Consensus        85 ~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~  163 (273)
                      .. ++++|+.+|++++.+....      ..++..+|.++...|++++|+.+|++++++.+...      .....+ .+..
T Consensus        89 ~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~------~~~~~~-~~~~  155 (275)
T 1xnf_A           89 QAGNFDAAYEAFDSVLELDPTY------NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP------FRSLWL-YLAE  155 (275)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTC------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHH-HHHH
T ss_pred             HccCHHHHHHHHHHHHhcCccc------cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh------HHHHHH-HHHH
Confidence            77 9999999999999986543      36899999999999999999999999999765332      122222 2346


Q ss_pred             HhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHH
Q 024043          164 ELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER  218 (273)
Q Consensus       164 ~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~  218 (273)
                      ..|++++|+..|++++.....+.        .....+.+++..++...|...+++
T Consensus       156 ~~~~~~~A~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~a~~~~~~  202 (275)
T 1xnf_A          156 QKLDEKQAKEVLKQHFEKSDKEQ--------WGWNIVEFYLGNISEQTLMERLKA  202 (275)
T ss_dssp             HHHCHHHHHHHHHHHHHHSCCCS--------THHHHHHHHTTSSCHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcCCcch--------HHHHHHHHHHHhcCHHHHHHHHHH
Confidence            67899999999988875433321        112234445556666555555543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.38  E-value=1.5e-11  Score=94.97  Aligned_cols=115  Identities=11%  Similarity=0.070  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcC------ChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043           72 AAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIG------RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (273)
Q Consensus        72 aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g------~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~  144 (273)
                      .+..+.+.|+.+... ++++|+.+|++|+.+-+...      ....-+.+|.++|.++..+|+|++|+.+|.+|+++|..
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            455666777777666 88888888888888877621      11123559999999999999999999999999999655


Q ss_pred             cCC-cccHHHHH----HHHHHHHHHhcCHHHHHHHHHHHHHHHhccc
Q 024043          145 EEV-TTSANQCK----QKVAQYAAELEQYHKSIEIYEEIARQSLNNN  186 (273)
Q Consensus       145 ~~~-~~~~~~~~----~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~  186 (273)
                      .+. .+.-..+|    .+.|.++..+|+|++|+..|++++...+++.
T Consensus        90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~  136 (159)
T 2hr2_A           90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK  136 (159)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence            433 23445778    9999999999999999999999998777764

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.37  E-value=1.5e-11  Score=98.85  Aligned_cols=138  Identities=15%  Similarity=0.141  Sum_probs=115.6

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCCh
Q 024043           30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL  108 (273)
Q Consensus        30 ~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~  108 (273)
                      .++..+|. .|..+...|++++|+.+|.++.      ..   .+.++.++|.+|... ++++|+.+|++++.+...    
T Consensus         4 ~~~~~~~~-~g~~~~~~~~~~~A~~~~~~a~------~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----   69 (213)
T 1hh8_A            4 VEAISLWN-EGVLAADKKDWKGALDAFSAVQ------DP---HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH----   69 (213)
T ss_dssp             HHHHHHHH-HHHHHHHTTCHHHHHHHHHTSS------SC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred             HHHHHHHH-HHHHHHHhCCHHHHHHHHHHHc------CC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc----
Confidence            45555554 5888889999999999999984      11   246899999999877 999999999999988533    


Q ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC----------CcccHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 024043          109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE----------VTTSANQCKQKVAQYAAELEQYHKSIEIYEEI  178 (273)
Q Consensus       109 ~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~----------~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~  178 (273)
                        .+.++.++|.++...|++++|+.+|++++++.+...          .......++..+|.++..+|++++|++.|+++
T Consensus        70 --~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  147 (213)
T 1hh8_A           70 --LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA  147 (213)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             --chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence              256899999999999999999999999999887655          44556788999999999999999999999999


Q ss_pred             HHHHh
Q 024043          179 ARQSL  183 (273)
Q Consensus       179 ~~~~~  183 (273)
                      +...+
T Consensus       148 l~~~p  152 (213)
T 1hh8_A          148 TSMKS  152 (213)
T ss_dssp             HTTCC
T ss_pred             HHcCc
Confidence            75443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.37  E-value=4.2e-11  Score=99.42  Aligned_cols=153  Identities=11%  Similarity=-0.029  Sum_probs=121.0

Q ss_pred             cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh
Q 024043           46 AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES  124 (273)
Q Consensus        46 ~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~  124 (273)
                      .|++++|+..|.++++..  ..++...+.++..+|.++... ++++|+.+|++++.+...      -..++..+|.++..
T Consensus        18 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~   89 (275)
T 1xnf_A           18 TLQQEVILARMEQILASR--ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD------MPEVFNYLGIYLTQ   89 (275)
T ss_dssp             CHHHHHHHHHHHHHHTSS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHhcc--cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHH
Confidence            467888888888887652  234567788999999999887 999999999999997543      24589999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHH
Q 024043          125 EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQL  204 (273)
Q Consensus       125 ~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l  204 (273)
                      .|++++|+.+|++|+++.+..      ..++..+|.++...|++++|+.+|++++...+.++       ......+ +..
T Consensus        90 ~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-------~~~~~~~-~~~  155 (275)
T 1xnf_A           90 AGNFDAAYEAFDSVLELDPTY------NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP-------FRSLWLY-LAE  155 (275)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTC------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------HHHHHHH-HHH
T ss_pred             ccCHHHHHHHHHHHHhcCccc------cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh-------HHHHHHH-HHH
Confidence            999999999999999986432      36789999999999999999999999987555442       1112223 235


Q ss_pred             hcCCHHHHHHHHHHHH
Q 024043          205 CKGDVVAITNALERYQ  220 (273)
Q Consensus       205 ~~gd~~~A~~~~~~~~  220 (273)
                      ..|++..|...+++..
T Consensus       156 ~~~~~~~A~~~~~~~~  171 (275)
T 1xnf_A          156 QKLDEKQAKEVLKQHF  171 (275)
T ss_dssp             HHHCHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHH
Confidence            6689999999887654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.37  E-value=3.2e-11  Score=98.60  Aligned_cols=140  Identities=11%  Similarity=0.050  Sum_probs=109.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc------------------c-CHHHHHHHHHHH
Q 024043           38 KAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK------------------T-SSNEAISCLEQA   98 (273)
Q Consensus        38 ~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~------------------~-~~~eA~~~~~~A   98 (273)
                      ..|.+|...|+|++|+..|.+++..+.....   +..++..+|.++..                  . ++++|+..|+++
T Consensus        46 ~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~---~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  122 (225)
T 2yhc_A           46 DLIYAYYKNADLPLAQAAIDRFIRLNPTHPN---IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKL  122 (225)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT---HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc---HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHH
Confidence            3477888999999999999999988754433   33455666666542                  3 799999999999


Q ss_pred             HHHHHhcCChhHH-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcC
Q 024043           99 VNMFCDIGRLSMA-----------ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQ  167 (273)
Q Consensus        99 l~~~~~~g~~~~~-----------a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~  167 (273)
                      +..++.......+           +.....+|.+|...|++++|+..|+++++.++...   ....++..+|.++.++|+
T Consensus       123 l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~a~~~l~~~~~~~g~  199 (225)
T 2yhc_A          123 VRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQ---ATRDALPLMENAYRQMQM  199 (225)
T ss_dssp             HTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSH---HHHHHHHHHHHHHHHTTC
T ss_pred             HHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCC---ccHHHHHHHHHHHHHcCC
Confidence            9988766543321           22335788999999999999999999999987542   345789999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 024043          168 YHKSIEIYEEIARQSL  183 (273)
Q Consensus       168 y~~A~~~~~~~~~~~~  183 (273)
                      +++|++.++++....+
T Consensus       200 ~~~A~~~~~~l~~~~~  215 (225)
T 2yhc_A          200 NAQAEKVAKIIAANSS  215 (225)
T ss_dssp             HHHHHHHHHHHHHCCS
T ss_pred             cHHHHHHHHHHHhhCC
Confidence            9999999998865433

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.36  E-value=8.7e-12  Score=92.92  Aligned_cols=104  Identities=15%  Similarity=0.111  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCc
Q 024043           70 HEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT  148 (273)
Q Consensus        70 ~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~  148 (273)
                      +..+..+.+.|++|.+. ++++|+++|++|+++.+..      +.++.++|.++..+|++++|+..|++|+++.+.    
T Consensus        10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----   79 (126)
T 4gco_A           10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN------AILYSNRAACLTKLMEFQRALDDCDTCIRLDSK----   79 (126)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh----
Confidence            45677888899998777 9999999999999875433      468999999999999999999999999998432    


Q ss_pred             ccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          149 TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       149 ~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                        ...++..+|.++..+|+|++|++.|++++...+++
T Consensus        80 --~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~  114 (126)
T 4gco_A           80 --FIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN  114 (126)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             --hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCC
Confidence              24679999999999999999999999998776665

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.34  E-value=4.8e-11  Score=96.41  Aligned_cols=167  Identities=12%  Similarity=0.195  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHH----------------HHHHHHhcCCHHHHHHHHH
Q 024043           74 QAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKE----------------IAELYESEHNIEQTIVFFE  136 (273)
Q Consensus        74 ~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~----------------lg~~~~~~g~~~~A~~~y~  136 (273)
                      ..+...|..+... ++++|+.+|++++.+.+..      +.++..                +|.++...|++++|+.+|+
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~   78 (208)
T 3urz_A            5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDR------TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK   78 (208)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH------HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            3445566666555 9999999999999876543      234445                9999999999999999999


Q ss_pred             HHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCH--HHHHH
Q 024043          137 KAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDV--VAITN  214 (273)
Q Consensus       137 ~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~--~~A~~  214 (273)
                      +|+++.+..      ..++..+|.++..+|++++|+.+|++++...+++.       ..++++|.++...|+.  ..+..
T Consensus        79 ~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-------~a~~~lg~~~~~~~~~~~~~~~~  145 (208)
T 3urz_A           79 ELLQKAPNN------VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL-------AANIFLGNYYYLTAEQEKKKLET  145 (208)
T ss_dssp             HHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-------HHHHHHHHHHHHHhHHHHHHHHH
Confidence            999986532      47899999999999999999999999987766553       3667888887666543  23333


Q ss_pred             HHHHHH--------HHHHHHhhcCHhHHHHHHHhhhccCCCchhHH--HHHHHHH
Q 024043          215 ALERYQ--------DIAASMDEEDIAKFTDVVKEFDSMTPLDPWKT--TLLLRVK  259 (273)
Q Consensus       215 ~~~~~~--------~ll~a~~~~d~~~~~~~~~~~~~~~~ld~~~~--~~l~~~~  259 (273)
                      .+....        .....+..-....+.+++..|++...++|-..  +.|.+|+
T Consensus       146 ~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~i~  200 (208)
T 3urz_A          146 DYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDKIL  200 (208)
T ss_dssp             HHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHHHH
T ss_pred             HHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            332211        00111111224567889999999999988543  4455543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.34  E-value=1e-10  Score=99.75  Aligned_cols=127  Identities=12%  Similarity=0.064  Sum_probs=58.7

Q ss_pred             HHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHH
Q 024043           75 AYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL-SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSAN  152 (273)
Q Consensus        75 ~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~-~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~  152 (273)
                      ++..+|.++... ++++|+.+|++++.+...  +. ...+.++.   .++...|++++|+.+|+++++.+..      ..
T Consensus       132 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~--~~~~~l~~a~~---~l~~~~~~~~eA~~~~~~~l~~~p~------~~  200 (291)
T 3mkr_A          132 CMAMTVQILLKLDRLDLARKELKKMQDQDED--ATLTQLATAWV---SLAAGGEKLQDAYYIFQEMADKCSP------TL  200 (291)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHH---HHHHCTTHHHHHHHHHHHHHHHSCC------CH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC--cHHHHHHHHHH---HHHhCchHHHHHHHHHHHHHHhCCC------cH
Confidence            444455555444 555555555555554211  10 00111111   1122235555566555555555321      12


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHH-HHHHHHHH
Q 024043          153 QCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVA-ITNALERY  219 (273)
Q Consensus       153 ~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~-A~~~~~~~  219 (273)
                      .++..+|.++..+|++++|.+.|++++...++++       ..+.++|.++...|+... +.+++++.
T Consensus       201 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~-------~~l~~l~~~~~~~g~~~eaa~~~~~~~  261 (291)
T 3mkr_A          201 LLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP-------ETLINLVVLSQHLGKPPEVTNRYLSQL  261 (291)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            4455555566666666666666665554433331       234455555555555433 34444443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.33  E-value=1.9e-10  Score=93.23  Aligned_cols=156  Identities=15%  Similarity=0.034  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc----CHHHHHHHHHHHHHHHHhcCChhHH
Q 024043           36 FDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT----SSNEAISCLEQAVNMFCDIGRLSMA  111 (273)
Q Consensus        36 ~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~----~~~eA~~~~~~Al~~~~~~g~~~~~  111 (273)
                      +...|.+|...+++++|+.+|.++++.    ++    +.++.++|.+|...    ++++|+.+|++|++    .|+    
T Consensus        21 ~~~lg~~~~~~~~~~~A~~~~~~a~~~----g~----~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~----~g~----   84 (212)
T 3rjv_A           21 QYYLADTWVSSGDYQKAEYWAQKAAAQ----GD----GDALALLAQLKIRNPQQADYPQARQLAEKAVE----AGS----   84 (212)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHT----TC----HHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHH----TTC----
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----CCC----
Confidence            445688888899999999999999763    44    46788999999777    89999999999964    344    


Q ss_pred             HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHh
Q 024043          112 ARYYKEIAELYES----EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAE----LEQYHKSIEIYEEIARQSL  183 (273)
Q Consensus       112 a~~l~~lg~~~~~----~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~----~g~y~~A~~~~~~~~~~~~  183 (273)
                      +.++.++|.+|..    .+++++|+.+|++|++.-    .......++.++|.+|..    .+++++|+.+|++++.. .
T Consensus        85 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~----~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~  159 (212)
T 3rjv_A           85 KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS----ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-S  159 (212)
T ss_dssp             HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST----TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-S
T ss_pred             HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC----CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-C
Confidence            5688999999987    789999999999998652    211335789999999999    88999999999999753 2


Q ss_pred             ccchhhhchhhHHHHHHHHHHhc-C-----CHHHHHHHHHHH
Q 024043          184 NNNLLKYGVKGHLLNAGICQLCK-G-----DVVAITNALERY  219 (273)
Q Consensus       184 ~~~~~~~~~~~~~~~~gl~~l~~-g-----d~~~A~~~~~~~  219 (273)
                      ++       ...++++|.+|..- |     |+..|...+++.
T Consensus       160 ~~-------~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A  194 (212)
T 3rjv_A          160 RT-------GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS  194 (212)
T ss_dssp             CT-------THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred             CC-------HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence            22       23567888887643 3     899999988875

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.31  E-value=2.1e-10  Score=88.52  Aligned_cols=113  Identities=17%  Similarity=0.157  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCC
Q 024043           35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKL------ESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR  107 (273)
Q Consensus        35 ~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~  107 (273)
                      .+...|+.+...|+|++|+.+|.+|+++....      .....-+.+|.+.|.++..+ ++++|+.+|++|+++|-+.+.
T Consensus        13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e   92 (159)
T 2hr2_A           13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE   92 (159)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence            34455888888999999999999999997652      11223455999999999888 999999999999999655443


Q ss_pred             h-hHHHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC
Q 024043          108 L-SMAARYY----KEIAELYESEHNIEQTIVFFEKAADMFQNEEV  147 (273)
Q Consensus       108 ~-~~~a~~l----~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~  147 (273)
                      . ..-+.+|    .+.|.++..+|++++|+.+|++|+++..+...
T Consensus        93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~  137 (159)
T 2hr2_A           93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  137 (159)
T ss_dssp             TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence            2 2345677    99999999999999999999999999887654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.31  E-value=3.1e-10  Score=112.60  Aligned_cols=221  Identities=12%  Similarity=0.139  Sum_probs=150.9

Q ss_pred             hHhhHHHHHHHHHHhhcccc-CC-C-CCHHHHHHHHHH---------HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHH
Q 024043            4 QIARAEEFEKKAEKKLNGWG-LF-G-SKYEDAADLFDK---------AANSFKLAKSWDKAGATYVKLANCHLKLESKHE   71 (273)
Q Consensus         4 ~~~~a~~l~~~Aek~~k~~~-~~-~-~~~~~A~~~~~~---------a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~   71 (273)
                      +.+||-.++++++...+... +. . ++|++|.+++.+         .|..+...|++++|+++|.+|       ++   
T Consensus      1064 lyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-------dD--- 1133 (1630)
T 1xi4_A         1064 LFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DD--- 1133 (1630)
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-------CC---
Confidence            36777777777765444211 11 2 678888877754         477788888888888888775       33   


Q ss_pred             HHHHHHHHHHHHhcc-CHHHHHHHHHHHHHH-------------HHhcCChhHHHH--------HHHHHHHHHHhcCCHH
Q 024043           72 AAQAYVDAAHCYKKT-SSNEAISCLEQAVNM-------------FCDIGRLSMAAR--------YYKEIAELYESEHNIE  129 (273)
Q Consensus        72 aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~-------------~~~~g~~~~~a~--------~l~~lg~~~~~~g~~~  129 (273)
                       ...|.+.+.++.+. ++++|+++|..|...             |.+.++......        .+.++|..+...|+|+
T Consensus      1134 -~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~Ye 1212 (1630)
T 1xi4_A         1134 -PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYD 1212 (1630)
T ss_pred             -hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHH
Confidence             24667788888777 899999999877632             222333332221        3567999999999999


Q ss_pred             HHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh---------ccchh----hhc-----
Q 024043          130 QTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSL---------NNNLL----KYG-----  191 (273)
Q Consensus       130 ~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~---------~~~~~----~~~-----  191 (273)
                      +|..+|.+|              ..|.++|.++.++|+|++|++.++++.....         +....    ..+     
T Consensus      1213 eA~~~Y~kA--------------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv 1278 (1630)
T 1xi4_A         1213 AAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV 1278 (1630)
T ss_pred             HHHHHHHhh--------------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhc
Confidence            999999885              3688999999999999999999999842211         00000    000     


Q ss_pred             hhhHHHHHHHHHHhcCCHHHHHHHHHHHH-----------HHHHHHhhcCHhHHHHHHHhhhccCCCch
Q 024043          192 VKGHLLNAGICQLCKGDVVAITNALERYQ-----------DIAASMDEEDIAKFTDVVKEFDSMTPLDP  249 (273)
Q Consensus       192 ~~~~~~~~gl~~l~~gd~~~A~~~~~~~~-----------~ll~a~~~~d~~~~~~~~~~~~~~~~ld~  249 (273)
                      ..+.+..++..|...|.+++|.+.++...           .+-..+..-.++++.+.++-|-+-..+.|
T Consensus      1279 ~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k 1347 (1630)
T 1xi4_A         1279 HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK 1347 (1630)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccch
Confidence            12233455666777888888888887653           33344566678888888888887777777

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.30  E-value=1e-11  Score=95.33  Aligned_cols=123  Identities=10%  Similarity=0.031  Sum_probs=97.3

Q ss_pred             HHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHH
Q 024043           78 DAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQ  156 (273)
Q Consensus        78 ~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~  156 (273)
                      .+|.+++.. ++++|+..+++++...+      .....+..+|.+|...|++++|+++|++|+++.+..      ..++.
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p------~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~------~~a~~   69 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPR------QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD------PKAHR   69 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHH------HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCc------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHH
Confidence            467888777 99999999999876544      345578899999999999999999999999985432      47899


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHH-HHHH
Q 024043          157 KVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNA-LERY  219 (273)
Q Consensus       157 ~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~-~~~~  219 (273)
                      .+|.++..+|++++|+..|++++...+++       ...++++|.++...|++.+|.+. +++.
T Consensus        70 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~aa~~~~~~a  126 (150)
T 4ga2_A           70 FLGLLYELEENTDKAVECYRRSVELNPTQ-------KDLVLKIAELLCKNDVTDGRAKYWVERA  126 (150)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHCSSSSHHHHHHHHH
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            99999999999999999999998766554       24678899999999988665554 4554

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.30  E-value=1.1e-10  Score=93.58  Aligned_cols=153  Identities=14%  Similarity=0.065  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCccc
Q 024043           72 AAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTS  150 (273)
Q Consensus        72 aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~  150 (273)
                      .+..+.+.|.++... ++++|+.+|++++.       +  .+.++.++|.++...|++++|+.+|++|+.+...      
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~-------~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------   69 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQD-------P--HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH------   69 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSSS-------C--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHcC-------C--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------
Confidence            344566788888766 99999999999851       1  2569999999999999999999999999998532      


Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccch---------hhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 024043          151 ANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNL---------LKYGVKGHLLNAGICQLCKGDVVAITNALERYQD  221 (273)
Q Consensus       151 ~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~  221 (273)
                      ...++..+|.++..+|+|++|++.|++++...++++.         ........++++|.++...|++..|...+++...
T Consensus        70 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  149 (213)
T 1hh8_A           70 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  149 (213)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            2467999999999999999999999999865544320         0112346778999999999999999999998743


Q ss_pred             HHHHHhhcCHhHHHHHHHhhh
Q 024043          222 IAASMDEEDIAKFTDVVKEFD  242 (273)
Q Consensus       222 ll~a~~~~d~~~~~~~~~~~~  242 (273)
                      +   ........+..++..+.
T Consensus       150 ~---~p~~~~~~~~~a~~~~~  167 (213)
T 1hh8_A          150 M---KSEPRHSKIDKAMECVW  167 (213)
T ss_dssp             T---CCSGGGGHHHHHHHHHH
T ss_pred             c---CcccccchHHHHHHHHH
Confidence            2   11222345666666554

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.30  E-value=2.3e-11  Score=115.66  Aligned_cols=189  Identities=11%  Similarity=0.033  Sum_probs=144.7

Q ss_pred             HHcCCHHHHHHHHHHHHHHH-H-HcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 024043           44 KLAKSWDKAGATYVKLANCH-L-KLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAE  120 (273)
Q Consensus        44 ~~~~~~~~A~~~~~~a~~~~-~-~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~  120 (273)
                      ...|++++|+++|.++++.. . ........+.++..+|.++... ++++|+..|++++.+....      +.++.++|.
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~  475 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR------WRLVWYRAV  475 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC------HHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch------HHHHHHHHH
Confidence            56789999999999998211 1 0011122346788889998777 9999999999999886543      468999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHH
Q 024043          121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAG  200 (273)
Q Consensus       121 ~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  200 (273)
                      ++...|++++|+..|++|+++....      ..++.++|.++..+|+|++ ++.|++++...+++       ...++++|
T Consensus       476 ~~~~~g~~~~A~~~~~~al~l~P~~------~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~-------~~a~~~lg  541 (681)
T 2pzi_A          476 AELLTGDYDSATKHFTEVLDTFPGE------LAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV-------ISAAFGLA  541 (681)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSTTC------SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC-------HHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch-------HHHHHHHH
Confidence            9999999999999999999987543      3678899999999999999 99999998765554       23678899


Q ss_pred             HHHHhcCCHHHHHHHHHHHH-----------HHHHHHhh-c-----CHhHHHHHHHhhhccCCCchhHH
Q 024043          201 ICQLCKGDVVAITNALERYQ-----------DIAASMDE-E-----DIAKFTDVVKEFDSMTPLDPWKT  252 (273)
Q Consensus       201 l~~l~~gd~~~A~~~~~~~~-----------~ll~a~~~-~-----d~~~~~~~~~~~~~~~~ld~~~~  252 (273)
                      .++...|++++|...+++..           .+-.++-. +     +.+.+.+++..+..+...++-..
T Consensus       542 ~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~  610 (681)
T 2pzi_A          542 RARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVL  610 (681)
T ss_dssp             HHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHH
T ss_pred             HHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHH
Confidence            99999999999999988643           22222222 2     25889999999988876555433

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.28  E-value=1.1e-11  Score=117.88  Aligned_cols=146  Identities=12%  Similarity=-0.014  Sum_probs=117.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHH
Q 024043           37 DKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYY  115 (273)
Q Consensus        37 ~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l  115 (273)
                      ...|.++...|++++|+..|.++++....  +    +.++..+|.++... ++++|+.+|++|+.+....      +.++
T Consensus       437 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~------~~~~  504 (681)
T 2pzi_A          437 LMEVRALLDLGDVAKATRKLDDLAERVGW--R----WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE------LAPK  504 (681)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHCC--C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC------SHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhccCcc--h----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hHHH
Confidence            34467888999999999999999987532  2    46888999999877 9999999999999987655      3588


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhH
Q 024043          116 KEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGH  195 (273)
Q Consensus       116 ~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~  195 (273)
                      .++|.++..+|++++ +.+|++|+++....      ..++.++|.++..+|++++|++.|++++...+.       ....
T Consensus       505 ~~lg~~~~~~g~~~~-~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-------~~~a  570 (681)
T 2pzi_A          505 LALAATAELAGNTDE-HKFYQTVWSTNDGV------ISAAFGLARARSAEGDRVGAVRTLDEVPPTSRH-------FTTA  570 (681)
T ss_dssp             HHHHHHHHHHTCCCT-TCHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTT-------HHHH
T ss_pred             HHHHHHHHHcCChHH-HHHHHHHHHhCCch------HHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcc-------cHHH
Confidence            999999999999999 99999999985432      357999999999999999999999998643332       2345


Q ss_pred             HHHHHHHHHhcCC
Q 024043          196 LLNAGICQLCKGD  208 (273)
Q Consensus       196 ~~~~gl~~l~~gd  208 (273)
                      +++++.+++..++
T Consensus       571 ~~~~~~~~~~~~~  583 (681)
T 2pzi_A          571 RLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHHHHHTC----
T ss_pred             HHHHHHHHHccCC
Confidence            6778888776555

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.28  E-value=2.8e-10  Score=87.12  Aligned_cols=138  Identities=14%  Similarity=0.083  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcc
Q 024043           71 EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT  149 (273)
Q Consensus        71 ~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~  149 (273)
                      ..+..+..+|.++... ++++|+.+|++++.+....      ..++.++|.++...|++++|+.+|++++.+....    
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----   80 (166)
T 1a17_A           11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN------AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY----   80 (166)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----
Confidence            4556677777777665 7888888888877764432      4577788888888888888888888888775321    


Q ss_pred             cHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 024043          150 SANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDIAAS  225 (273)
Q Consensus       150 ~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~a  225 (273)
                        ..++..+|.++..+|++++|+.+|++++...+.+..     ....+..+..++..|++.+|...+.....+++.
T Consensus        81 --~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  149 (166)
T 1a17_A           81 --IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKD-----AKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS  149 (166)
T ss_dssp             --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHHHHHHHHHHHHcccchHHHhcc
Confidence              356778888888888888888888887755444321     111233344466677777777777766555443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.28  E-value=6.7e-10  Score=101.08  Aligned_cols=160  Identities=15%  Similarity=0.125  Sum_probs=101.9

Q ss_pred             CCHHHHHHHHHHH------------HHHHHH----cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc----c
Q 024043           27 SKYEDAADLFDKA------------ANSFKL----AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK----T   86 (273)
Q Consensus        27 ~~~~~A~~~~~~a------------~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~----~   86 (273)
                      +++++|..+|.++            |.+|..    .+++++|+.+|.++++.    ++    ..++..+|.+|..    .
T Consensus        57 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~  128 (490)
T 2xm6_A           57 KDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK----GL----PQAQQNLGVMYHEGNGVK  128 (490)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSC
T ss_pred             cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCC
Confidence            6777887777765            456666    77788888888887653    33    3456667777765    3


Q ss_pred             -CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHH
Q 024043           87 -SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES----EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQY  161 (273)
Q Consensus        87 -~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~----~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~  161 (273)
                       ++++|+.+|++|++.    |+    +.++.++|.+|..    .+++++|+++|++|++.    ++    ..++..+|.+
T Consensus       129 ~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~----~~----~~a~~~Lg~~  192 (490)
T 2xm6_A          129 VDKAESVKWFRLAAEQ----GR----DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ----GN----VWSCNQLGYM  192 (490)
T ss_dssp             CCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHH
Confidence             777777777777653    33    4567777777776    56777777777777654    21    3556677777


Q ss_pred             HHH----hcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 024043          162 AAE----LEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC----KGDVVAITNALERY  219 (273)
Q Consensus       162 ~~~----~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~----~gd~~~A~~~~~~~  219 (273)
                      |..    .+++++|+++|++++..  ++       ...++.+|.++..    .+|+.+|...+++.
T Consensus       193 y~~g~g~~~~~~~A~~~~~~a~~~--~~-------~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a  249 (490)
T 2xm6_A          193 YSRGLGVERNDAISAQWYRKSATS--GD-------ELGQLHLADMYYFGIGVTQDYTQSRVLFSQS  249 (490)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHT--TC-------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HhcCCCCCcCHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            776    66777777777776531  11       1234455555553    55666665555543

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.26  E-value=5.8e-11  Score=88.38  Aligned_cols=111  Identities=14%  Similarity=0.151  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHH
Q 024043           33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMA  111 (273)
Q Consensus        33 ~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~  111 (273)
                      ++.+...|+.|...|+|++|+.+|.+++++...      -+.++.++|.+|... ++++|+.+|++|+++....      
T Consensus        13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------   80 (126)
T 4gco_A           13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE------NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF------   80 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh------
Confidence            345556799999999999999999999987432      256889999999888 9999999999999885433      


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHH
Q 024043          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQY  161 (273)
Q Consensus       112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~  161 (273)
                      ..++.++|.++..+|++++|+++|++|+++.+..      ..++..++.+
T Consensus        81 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~------~~a~~~l~~~  124 (126)
T 4gco_A           81 IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN------EEAREGVRNC  124 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCC------HHHHHHHHHh
Confidence            4589999999999999999999999999986533      2445555554

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.25  E-value=3.9e-11  Score=111.35  Aligned_cols=123  Identities=11%  Similarity=0.011  Sum_probs=54.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 024043           40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI  118 (273)
Q Consensus        40 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~l  118 (273)
                      |.++...|++++|..+|.+++++...      ...++.++|.+|... ++++|+.+|++++.+....      +.++.++
T Consensus        30 g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l   97 (568)
T 2vsy_A           30 ADAELGMGDTTAGEMAVQRGLALHPG------HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH------PGIALWL   97 (568)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHTTSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------HHHHHHH
Confidence            44444444444444444444443211      123444444444443 4444555554444442211      2344444


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHH
Q 024043          119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL---EQYHKSIEIYEEIAR  180 (273)
Q Consensus       119 g~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~---g~y~~A~~~~~~~~~  180 (273)
                      |.++...|++++|+++|++|+++....      ..++..+|.++..+   |++++|++.|++++.
T Consensus        98 a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~  156 (568)
T 2vsy_A           98 GHALEDAGQAEAAAAAYTRAHQLLPEE------PYITAQLLNWRRRLCDWRALDVLSAQVRAAVA  156 (568)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence            444444445555555554444442211      23344444444444   444445544444443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.25  E-value=5.6e-11  Score=91.55  Aligned_cols=103  Identities=15%  Similarity=0.103  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCc
Q 024043           70 HEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT  148 (273)
Q Consensus        70 ~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~  148 (273)
                      +....++..+|.++... ++++|+.+|++++.+.+..      +.++.++|.++...|++++|+.+|++|+.+.+..   
T Consensus        33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~---  103 (151)
T 3gyz_A           33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN------VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND---  103 (151)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC---
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC---
Confidence            45566788888888777 9999999999999886543      4589999999999999999999999999997543   


Q ss_pred             ccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 024043          149 TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN  184 (273)
Q Consensus       149 ~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~  184 (273)
                         ..++.++|.++..+|++++|+..|++++...++
T Consensus       104 ---~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~  136 (151)
T 3gyz_A          104 ---YTPVFHTGQCQLRLKAPLKAKECFELVIQHSND  136 (151)
T ss_dssp             ---CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             ---cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence               257899999999999999999999999865544

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.24  E-value=2.8e-10  Score=83.33  Aligned_cols=129  Identities=18%  Similarity=0.294  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHH
Q 024043           35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAAR  113 (273)
Q Consensus        35 ~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~  113 (273)
                      .+...|.++...|++++|...|.++......  +    ...+..+|.++... ++++|+.++++++.....      ...
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~   70 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR--S----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR------SAE   70 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc--c----hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC------chH
Confidence            4556788999999999999999999876321  2    45677888888766 999999999999887432      245


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 024043          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ  181 (273)
Q Consensus       114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~  181 (273)
                      ++..+|.++...|++++|+.++++++......      ..++..+|.++...|++++|+.+|++++..
T Consensus        71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           71 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            78899999999999999999999999875422      467889999999999999999999998753

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.24  E-value=2.7e-10  Score=87.24  Aligned_cols=134  Identities=14%  Similarity=0.123  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCCh
Q 024043           30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL  108 (273)
Q Consensus        30 ~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~  108 (273)
                      .+.+..+...|.++...|++++|+..|.+++......      ..++..+|.++... ++++|+.++++++.+....   
T Consensus        10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---   80 (166)
T 1a17_A           10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN------AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY---   80 (166)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---
Confidence            3445666777999999999999999999999874322      56788999999877 9999999999999985432   


Q ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043          109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA  179 (273)
Q Consensus       109 ~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~  179 (273)
                         ..++..+|.++...|++++|+.+|++++++.....    ........+..+...|++++|++.+.+..
T Consensus        81 ---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  144 (166)
T 1a17_A           81 ---IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK----DAKMKYQECNKIVKQKAFERAIAGDEHKR  144 (166)
T ss_dssp             ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence               46899999999999999999999999999865332    12334556666888999999999999875

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.23  E-value=1.7e-09  Score=98.42  Aligned_cols=151  Identities=15%  Similarity=0.155  Sum_probs=99.0

Q ss_pred             HhhHHHHHHHHHHhhc-------ccc-CC----CCCHHHHHHHHHHH------------HHHHHH----cCCHHHHHHHH
Q 024043            5 IARAEEFEKKAEKKLN-------GWG-LF----GSKYEDAADLFDKA------------ANSFKL----AKSWDKAGATY   56 (273)
Q Consensus         5 ~~~a~~l~~~Aek~~k-------~~~-~~----~~~~~~A~~~~~~a------------~~~~~~----~~~~~~A~~~~   56 (273)
                      .++|.+++++|-+.-.       |.. ..    .+|+++|..+|.++            |.+|..    .+++++|+..|
T Consensus        59 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~  138 (490)
T 2xm6_A           59 LTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWF  138 (490)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence            5667777777765421       100 11    36888888888876            456666    67888888888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhc----c-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh----cCC
Q 024043           57 VKLANCHLKLESKHEAAQAYVDAAHCYKK----T-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES----EHN  127 (273)
Q Consensus        57 ~~a~~~~~~~~~~~~aa~~~~~~~~~~~~----~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~----~g~  127 (273)
                      +++++.    ++    ..++..+|.+|..    . ++++|+.+|+++++.    |+    +.++..+|.+|..    .++
T Consensus       139 ~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~~  202 (490)
T 2xm6_A          139 RLAAEQ----GR----DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ----GN----VWSCNQLGYMYSRGLGVERN  202 (490)
T ss_dssp             HHHHHT----TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSCCC
T ss_pred             HHHHHC----CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHhcCCCCCcC
Confidence            888653    33    3567778888865    2 788888888888753    33    4567777777776    577


Q ss_pred             HHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHH----hcCHHHHHHHHHHHH
Q 024043          128 IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAE----LEQYHKSIEIYEEIA  179 (273)
Q Consensus       128 ~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~----~g~y~~A~~~~~~~~  179 (273)
                      +++|+.+|++|++.    ++    ..++..+|.++..    .+++++|+.+|++++
T Consensus       203 ~~~A~~~~~~a~~~----~~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~  250 (490)
T 2xm6_A          203 DAISAQWYRKSATS----GD----ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSA  250 (490)
T ss_dssp             HHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence            77777777777653    11    2345556666654    556666666666554

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.23  E-value=1.6e-10  Score=100.45  Aligned_cols=136  Identities=13%  Similarity=0.165  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHH
Q 024043           32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLES---------KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNM  101 (273)
Q Consensus        32 A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~  101 (273)
                      -+..+...|.++...|+|++|+.+|.+++.+......         ....+.++.++|.||... ++++|+.+|++|+.+
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3445667799999999999999999999998765431         223368899999999888 999999999999998


Q ss_pred             HHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHH-HHHHHHHH
Q 024043          102 FCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS-IEIYEEIA  179 (273)
Q Consensus       102 ~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A-~~~~~~~~  179 (273)
                      ....      +.++.++|.+|..+|++++|+.+|++|+++....      ..++..++.++..+|++++| ...|++..
T Consensus       226 ~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~------~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          226 DSNN------EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN------KAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             CTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6432      5689999999999999999999999999985432      36789999999999999999 45777765

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.23  E-value=2.8e-10  Score=98.94  Aligned_cols=155  Identities=12%  Similarity=0.093  Sum_probs=122.7

Q ss_pred             cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCC---------hhHHHHHH
Q 024043           46 AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR---------LSMAARYY  115 (273)
Q Consensus        46 ~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~---------~~~~a~~l  115 (273)
                      .+++++|++.|.++....      ...+..+.++|.++... ++++|+.+|++|+.+.....+         ....+.++
T Consensus       126 L~~~~~A~~~~~~a~~~~------p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~  199 (336)
T 1p5q_A          126 LKSFEKAKESWEMNSEEK------LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASH  199 (336)
T ss_dssp             EEEEECCCCGGGCCHHHH------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHH
T ss_pred             EeecccccchhcCCHHHH------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHH
Confidence            455666666666665542      44577889999999777 999999999999999876542         12236899


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhH
Q 024043          116 KEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGH  195 (273)
Q Consensus       116 ~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~  195 (273)
                      .++|.++..+|++++|+.+|++|+++...      ...++.++|.++..+|+|++|+..|++++...+++.       ..
T Consensus       200 ~nla~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~-------~a  266 (336)
T 1p5q_A          200 LNLAMCHLKLQAFSAAIESCNKALELDSN------NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK-------AA  266 (336)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH-------HH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH-------HH
Confidence            99999999999999999999999998543      246899999999999999999999999987655542       35


Q ss_pred             HHHHHHHHHhcCCHHHHH-HHHHHH
Q 024043          196 LLNAGICQLCKGDVVAIT-NALERY  219 (273)
Q Consensus       196 ~~~~gl~~l~~gd~~~A~-~~~~~~  219 (273)
                      +..++.++...|++.+|. ..+...
T Consensus       267 ~~~l~~~~~~~~~~~~a~~~~~~~~  291 (336)
T 1p5q_A          267 KTQLAVCQQRIRRQLAREKKLYANM  291 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677888888899888774 344443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.21  E-value=2.8e-09  Score=90.77  Aligned_cols=161  Identities=14%  Similarity=0.093  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHH
Q 024043           34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAA  112 (273)
Q Consensus        34 ~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a  112 (273)
                      ..+...+..+...+++++|+..+++.+...  . + +.....+..+|.++... ++++|++++++       .+    -.
T Consensus        66 ~a~~~la~~~~~~~~~~~A~~~l~~ll~~~--~-~-P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~----~~  130 (291)
T 3mkr_A           66 QAVRMFAEYLASHSRRDAIVAELDREMSRS--V-D-VTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GD----SL  130 (291)
T ss_dssp             HHHHHHHHHHHCSTTHHHHHHHHHHHHHSC--C-C-CSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CC----SH
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHhcc--c-C-CCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CC----CH
Confidence            344455677777788888888877765421  0 1 11234577788888766 99999998887       12    23


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhch
Q 024043          113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGV  192 (273)
Q Consensus       113 ~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~  192 (273)
                      .++..+|.++..+|++++|+..|++++++.+..    ...........++...|++++|+.+|++++...+.+       
T Consensus       131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~----~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~-------  199 (291)
T 3mkr_A          131 ECMAMTVQILLKLDRLDLARKELKKMQDQDEDA----TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT-------  199 (291)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCC-------
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc----HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCc-------
Confidence            578889999999999999999999999885321    111111112233345589999999999998765543       


Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          193 KGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       193 ~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      ...+.++|.++...|++++|...+++..
T Consensus       200 ~~~~~~la~~~~~~g~~~eA~~~l~~al  227 (291)
T 3mkr_A          200 LLLLNGQAACHMAQGRWEAAEGVLQEAL  227 (291)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            2467788999999999999999999865

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.19  E-value=9.5e-10  Score=100.37  Aligned_cols=133  Identities=5%  Similarity=-0.097  Sum_probs=108.6

Q ss_pred             ccCHHHHHHHHHHHHHHHHh-cC-ChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-C-CcccHHHHHHHHHH
Q 024043           85 KTSSNEAISCLEQAVNMFCD-IG-RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-E-VTTSANQCKQKVAQ  160 (273)
Q Consensus        85 ~~~~~eA~~~~~~Al~~~~~-~g-~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~-~-~~~~~~~~~~~~a~  160 (273)
                      ..++++|+.+|++++++..+ .| +....+.++.++|.+|..+|+|++|..+|++|+++++.. | ++...+.++.++|.
T Consensus       322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  401 (490)
T 3n71_A          322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGL  401 (490)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            34999999999999999976 34 456789999999999999999999999999999999875 3 35677899999999


Q ss_pred             HHHHhcCHHHHHHHHHHHHHH---HhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043          161 YAAELEQYHKSIEIYEEIARQ---SLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY  219 (273)
Q Consensus       161 ~~~~~g~y~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~  219 (273)
                      +|..+|+|++|..+|++++..   .+|..  -..+......++.++..++.+.+|...+.+.
T Consensus       402 ~~~~~G~~~eA~~~~~~Al~i~~~~lG~~--Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~  461 (490)
T 3n71_A          402 TNWHAGHIEVGHGMICKAYAILLVTHGPS--HPITKDLEAMRMQTEMELRMFRQNEFMYHKM  461 (490)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCTT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999633   33432  1234555566677888888888887777664

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.18  E-value=3.8e-10  Score=83.11  Aligned_cols=97  Identities=13%  Similarity=0.089  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHH
Q 024043           74 QAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSAN  152 (273)
Q Consensus        74 ~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~  152 (273)
                      ..+.+.|.++... ++++|+.+|++++.+....      +.++.++|.++...|++++|+.+|++|+++....      .
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~   72 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED------ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF------V   72 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------H
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc------H
Confidence            3444444444333 5555555555555443221      2345555555555555555555555555543211      2


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 024043          153 QCKQKVAQYAAELEQYHKSIEIYEEIARQS  182 (273)
Q Consensus       153 ~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~  182 (273)
                      .++..+|.++..+|++++|+..|++++...
T Consensus        73 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           73 RAYIRKATAQIAVKEYASALETLDAARTKD  102 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence            345555555555555555555555554443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.18  E-value=3.4e-10  Score=87.31  Aligned_cols=104  Identities=11%  Similarity=0.083  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHHhcc-CHHHHHHHHHHH
Q 024043           32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLES------------KHEAAQAYVDAAHCYKKT-SSNEAISCLEQA   98 (273)
Q Consensus        32 A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~A   98 (273)
                      .+..+...|+.+...|+|++|+.+|.+++.+......            ....+.++.++|.||... ++++|+.+++++
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            3455566677777788888888888888877543210            122233444444444443 444444444444


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043           99 VNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADM  141 (273)
Q Consensus        99 l~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~  141 (273)
                      +.+.+..      +.++..+|.++..+|++++|+.+|++|+++
T Consensus        90 l~~~p~~------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           90 LKREETN------EKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HhcCCcc------hHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            4442111      234444444444444444444444444444

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.18  E-value=6.8e-10  Score=85.44  Aligned_cols=100  Identities=16%  Similarity=0.115  Sum_probs=86.7

Q ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchh
Q 024043          109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLL  188 (273)
Q Consensus       109 ~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~  188 (273)
                      ..-+.++.++|.++...|++++|+.+|++++.+.+..      ..++..+|.++..+|+|++|+..|++++...++++  
T Consensus        33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~--  104 (151)
T 3gyz_A           33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN------VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY--  104 (151)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC--
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc--
Confidence            3346688999999999999999999999999985432      46799999999999999999999999988776653  


Q ss_pred             hhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 024043          189 KYGVKGHLLNAGICQLCKGDVVAITNALERYQD  221 (273)
Q Consensus       189 ~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~  221 (273)
                           ..++++|.|+...|+++.|..+|++...
T Consensus       105 -----~~~~~lg~~~~~lg~~~eA~~~~~~al~  132 (151)
T 3gyz_A          105 -----TPVFHTGQCQLRLKAPLKAKECFELVIQ  132 (151)
T ss_dssp             -----HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                 3678999999999999999999998743

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.18  E-value=2.4e-10  Score=106.00  Aligned_cols=133  Identities=8%  Similarity=0.024  Sum_probs=84.3

Q ss_pred             CCchHhhHHHHHHHHHHhhcc----c-----cCCC-CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHH
Q 024043            1 MGDQIARAEEFEKKAEKKLNG----W-----GLFG-SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATY   56 (273)
Q Consensus         1 ~~~~~~~a~~l~~~Aek~~k~----~-----~~~~-~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~   56 (273)
                      |+...++|.+++++|-+.-..    +     .++. +++++|...|.++              |.+|...|++++|..+|
T Consensus         1 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~   80 (568)
T 2vsy_A            1 MTADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL   80 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            344556777777776553321    0     1222 7888888888875              66788888888888888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc---CCHHHHH
Q 024043           57 VKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE---HNIEQTI  132 (273)
Q Consensus        57 ~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~---g~~~~A~  132 (273)
                      .+++++...      ...++.++|.+|... ++++|+++|++++++....      ..++.++|.++...   |++++|+
T Consensus        81 ~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~g~~~~A~  148 (568)
T 2vsy_A           81 QQASDAAPE------HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE------PYITAQLLNWRRRLCDWRALDVLS  148 (568)
T ss_dssp             HHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred             HHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhccccHHHHH
Confidence            888877422      145778888888777 8888888888888775432      35788888888888   8888888


Q ss_pred             HHHHHHHHHHhcc
Q 024043          133 VFFEKAADMFQNE  145 (273)
Q Consensus       133 ~~y~~Al~~~~~~  145 (273)
                      ++|+++++.....
T Consensus       149 ~~~~~al~~~p~~  161 (568)
T 2vsy_A          149 AQVRAAVAQGVGA  161 (568)
T ss_dssp             HHHHHHHHHTCCC
T ss_pred             HHHHHHHhcCCcc
Confidence            8888888876543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.17  E-value=3.8e-10  Score=87.07  Aligned_cols=111  Identities=10%  Similarity=0.028  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCC------------hhHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 024043           69 KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR------------LSMAARYYKEIAELYESEHNIEQTIVFF  135 (273)
Q Consensus        69 ~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~------------~~~~a~~l~~lg~~~~~~g~~~~A~~~y  135 (273)
                      ....+..+.+.|..+... ++++|+.+|.+|+.+......            ....+.++.++|.+|..+|++++|+.++
T Consensus         7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~   86 (162)
T 3rkv_A            7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS   86 (162)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            345678888999999777 999999999999999754321            3345679999999999999999999999


Q ss_pred             HHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          136 EKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       136 ~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                      .+|+++.+.      ...++..+|.++..+|+|++|+..|++++...+++
T Consensus        87 ~~al~~~p~------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~  130 (162)
T 3rkv_A           87 SEVLKREET------NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA  130 (162)
T ss_dssp             HHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHhcCCc------chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCC
Confidence            999998432      24689999999999999999999999998766654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.17  E-value=3.3e-10  Score=87.63  Aligned_cols=104  Identities=14%  Similarity=0.101  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCc
Q 024043           70 HEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT  148 (273)
Q Consensus        70 ~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~  148 (273)
                      ...+..+..+|.++... ++++|+.+|++++.+....      +.++.++|.+|...|++++|+.+|++|+++....   
T Consensus         8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---   78 (164)
T 3sz7_A            8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN------PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY---   78 (164)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---
Confidence            44567778888888766 8889999999888876443      4688899999999999999999999999885432   


Q ss_pred             ccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          149 TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       149 ~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                         ..++..+|.++..+|+|++|+.+|++++...+++
T Consensus        79 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  112 (164)
T 3sz7_A           79 ---SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNG  112 (164)
T ss_dssp             ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred             ---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence               4678889999999999999999999988766655

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.17  E-value=1.4e-09  Score=79.46  Aligned_cols=127  Identities=16%  Similarity=0.261  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHH
Q 024043           74 QAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSAN  152 (273)
Q Consensus        74 ~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~  152 (273)
                      .++..+|.++... ++++|+.++++++.....      ...++..+|.++...|++++|+.++++++.+...      ..
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~   69 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR------SA   69 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc------chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC------ch
Confidence            3567788888666 999999999999876432      2457889999999999999999999999987532      13


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043          153 QCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY  219 (273)
Q Consensus       153 ~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~  219 (273)
                      .++..+|.++...|++++|+.++++++...+.+       ...+..++.++...|++.+|...+++.
T Consensus        70 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~  129 (136)
T 2fo7_A           70 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-------AEAWYNLGNAYYKQGDYDEAIEYYQKA  129 (136)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            578899999999999999999999997654332       235667888999999999999988875

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.16  E-value=1.2e-09  Score=88.51  Aligned_cols=155  Identities=12%  Similarity=0.065  Sum_probs=120.9

Q ss_pred             hhHHHHHHHHHHhhc--cc---c--CC-CCCHHHHHHHHHHH------------HHHHHHcC----CHHHHHHHHHHHHH
Q 024043            6 ARAEEFEKKAEKKLN--GW---G--LF-GSKYEDAADLFDKA------------ANSFKLAK----SWDKAGATYVKLAN   61 (273)
Q Consensus         6 ~~a~~l~~~Aek~~k--~~---~--~~-~~~~~~A~~~~~~a------------~~~~~~~~----~~~~A~~~~~~a~~   61 (273)
                      ++|.+++++|-+.-.  .+   +  ++ .+++++|..+|.++            |.+|.. +    ++++|+.+|+++++
T Consensus         3 ~eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~   81 (212)
T 3rjv_A            3 TEPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE   81 (212)
T ss_dssp             -CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH
Confidence            467777877776533  11   1  22 38999999999987            345555 6    89999999999964


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHhc----c-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh----cCCHHHHH
Q 024043           62 CHLKLESKHEAAQAYVDAAHCYKK----T-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES----EHNIEQTI  132 (273)
Q Consensus        62 ~~~~~~~~~~aa~~~~~~~~~~~~----~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~----~g~~~~A~  132 (273)
                          .++    ..++.++|.+|..    . ++++|+.+|++|++    .|+....+.++.++|.+|..    .+++++|+
T Consensus        82 ----~g~----~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~----~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~  149 (212)
T 3rjv_A           82 ----AGS----KSGEIVLARVLVNRQAGATDVAHAITLLQDAAR----DSESDAAVDAQMLLGLIYASGVHGPEDDVKAS  149 (212)
T ss_dssp             ----TTC----HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS----STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHH
T ss_pred             ----CCC----HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH----cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence                344    4678899999986    3 99999999999985    35444567899999999999    78999999


Q ss_pred             HHHHHHHHHHhccCCcccHHHHHHHHHHHHHHh-c-----CHHHHHHHHHHHHH
Q 024043          133 VFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL-E-----QYHKSIEIYEEIAR  180 (273)
Q Consensus       133 ~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~-g-----~y~~A~~~~~~~~~  180 (273)
                      .+|++|++.   .++    ..++.++|.+|... |     ++++|+.+|++++.
T Consensus       150 ~~~~~A~~~---~~~----~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~  196 (212)
T 3rjv_A          150 EYFKGSSSL---SRT----GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL  196 (212)
T ss_dssp             HHHHHHHHT---SCT----THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHc---CCC----HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence            999999977   122    23688999999864 3     89999999999974

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.15  E-value=5.9e-10  Score=82.07  Aligned_cols=120  Identities=17%  Similarity=0.138  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhH
Q 024043           32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM  110 (273)
Q Consensus        32 A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~  110 (273)
                      -++.+...|..+...|+|++|+.+|.+++.+...      -..++.++|.+|... ++++|+.+|++++.+....     
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----   71 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE------DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF-----   71 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-----
Confidence            4577888999999999999999999999988532      247899999999888 9999999999999985433     


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHH
Q 024043          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAA  163 (273)
Q Consensus       111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~  163 (273)
                       ..++.++|.++..+|++++|+.+|++++++.+..++......++..++.+..
T Consensus        72 -~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~  123 (126)
T 3upv_A           72 -VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ  123 (126)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence             5689999999999999999999999999998665443444556666665544

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.14  E-value=1.9e-09  Score=78.64  Aligned_cols=123  Identities=14%  Similarity=0.107  Sum_probs=94.8

Q ss_pred             CHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q 024043           68 SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE  146 (273)
Q Consensus        68 ~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~  146 (273)
                      .....+..+..+|.++... ++++|+.+|++++......      +.++..+|.++...|++++|+.++.+++.+.... 
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-   79 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN------AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY-   79 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-
T ss_pred             cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC-
Confidence            3455667788888888766 8999999999998874332      5688899999999999999999999999874322 


Q ss_pred             CcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCH
Q 024043          147 VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDV  209 (273)
Q Consensus       147 ~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~  209 (273)
                           ..++..+|.++..+|++++|+.+|++++...+++.       ..+..++.++...|++
T Consensus        80 -----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           80 -----SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNE-------TYKSNLKIAELKLREA  130 (131)
T ss_dssp             -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-------HHHHHHHHHHHHHTTC
T ss_pred             -----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccch-------HHHHHHHHHHHHHhcC
Confidence                 46788999999999999999999999876544432       3456677777776654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.13  E-value=4.9e-09  Score=89.59  Aligned_cols=199  Identities=12%  Similarity=0.082  Sum_probs=137.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHH
Q 024043           35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAAR  113 (273)
Q Consensus        35 ~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~  113 (273)
                      ++...|.++...|++++|...|++++.+...  +.   ..++...|.++... ++++|+..|++|+.+....      ..
T Consensus       101 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~  169 (308)
T 2ond_A          101 LYFAYADYEESRMKYEKVHSIYNRLLAIEDI--DP---TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR------HH  169 (308)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS--CT---HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC------TH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcccc--Cc---cHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------HH
Confidence            4455678888999999999999999986321  11   12778888888776 9999999999998754321      34


Q ss_pred             HHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhch
Q 024043          114 YYKEIAELYE-SEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGV  192 (273)
Q Consensus       114 ~l~~lg~~~~-~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~  192 (273)
                      ++...+.+.. ..|++++|+..|++|++.+...      ...+..+|.++..+|++++|+.+|++++....-.+   ...
T Consensus       170 ~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p---~~~  240 (308)
T 2ond_A          170 VYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI------PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP---EKS  240 (308)
T ss_dssp             HHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG---GGC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH---HHH
Confidence            4555555533 3699999999999999997642      46789999999999999999999999975311010   012


Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCHhHHHHHHHhhhccCCCchhHHHHHH
Q 024043          193 KGHLLNAGICQLCKGDVVAITNALERYQDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLL  256 (273)
Q Consensus       193 ~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~a~~~~d~~~~~~~~~~~~~~~~ld~~~~~~l~  256 (273)
                      ...+...+......|+...|...+++...+.-  +..+...+...+..| .+..++|-....|.
T Consensus       241 ~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p--~~~~~~~~~~~~~r~-~~l~~~P~~~~~ln  301 (308)
T 2ond_A          241 GEIWARFLAFESNIGDLASILKVEKRRFTAFR--EEYEGKETALLVDRY-KFMDLYPCSASELK  301 (308)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT--TTTSSCHHHHHHTTT-CBTTBCSSCHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc--cccccchHHHHHHHH-HhcccCCCCHHHHH
Confidence            23455666667778999999988888643321  111111233334444 55557776665554

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.12  E-value=7.7e-10  Score=88.20  Aligned_cols=131  Identities=15%  Similarity=0.082  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhH----------HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043           70 HEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM----------AARYYKEIAELYESEHNIEQTIVFFEKA  138 (273)
Q Consensus        70 ~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~----------~a~~l~~lg~~~~~~g~~~~A~~~y~~A  138 (273)
                      ...+..+...|.++... ++++|+.+|++++.+.....+...          ...++.++|.++...|++++|+.+|++|
T Consensus        35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  114 (198)
T 2fbn_A           35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV  114 (198)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            34456677777777655 888888888888776655432221          2578999999999999999999999999


Q ss_pred             HHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHH
Q 024043          139 ADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAIT  213 (273)
Q Consensus       139 l~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~  213 (273)
                      +.+...      ...++..+|.++..+|+|++|+..|++++...+.+.       ..+..++.++...++..++.
T Consensus       115 l~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          115 LKIDKN------NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL-------DIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             HHHSTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH-------HHHHHHHHHHHHHHHHHC--
T ss_pred             HHhCcc------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH-------HHHHHHHHHHHHHHHHHHHH
Confidence            998432      246799999999999999999999999987655442       24455666666655554443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.11  E-value=1.1e-09  Score=83.59  Aligned_cols=105  Identities=9%  Similarity=-0.002  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCc
Q 024043           70 HEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT  148 (273)
Q Consensus        70 ~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~  148 (273)
                      ......+..+|.++... ++++|+.+|++++.+....      +.++.++|.++...|++++|+.+|++|+.+....   
T Consensus        18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---   88 (148)
T 2vgx_A           18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD------SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE---   88 (148)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---
T ss_pred             HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---
Confidence            34456777888888776 9999999999999875433      4588999999999999999999999999986533   


Q ss_pred             ccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccc
Q 024043          149 TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNN  186 (273)
Q Consensus       149 ~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~  186 (273)
                         ..++..+|.++..+|++++|+..|++++...++++
T Consensus        89 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  123 (148)
T 2vgx_A           89 ---PRFPFHAAECLLQXGELAEAESGLFLAQELIANXP  123 (148)
T ss_dssp             ---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCG
T ss_pred             ---chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence               35689999999999999999999999987766553

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.10  E-value=2.7e-09  Score=80.55  Aligned_cols=105  Identities=12%  Similarity=0.042  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCc
Q 024043           70 HEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT  148 (273)
Q Consensus        70 ~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~  148 (273)
                      ......+...|.++... ++++|+.+|++++.+....      ..++..+|.++...|++++|+.+|++|+.+.+..   
T Consensus        15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---   85 (142)
T 2xcb_A           15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD------ARYFLGLGACRQSLGLYEQALQSYSYGALMDINE---   85 (142)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---
Confidence            34455667788888666 9999999999999875433      4588999999999999999999999999986533   


Q ss_pred             ccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccc
Q 024043          149 TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNN  186 (273)
Q Consensus       149 ~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~  186 (273)
                         ..++..+|.++..+|++++|+..|++++...++++
T Consensus        86 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  120 (142)
T 2xcb_A           86 ---PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP  120 (142)
T ss_dssp             ---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred             ---cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence               25688999999999999999999999987766553

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.10  E-value=5.7e-09  Score=103.75  Aligned_cols=161  Identities=12%  Similarity=0.149  Sum_probs=104.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc
Q 024043           27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI  105 (273)
Q Consensus        27 ~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~  105 (273)
                      +.|++|..+|++++......+-+-+++..+.+|.+..++..+    -.++.++|.++... ++++|+++|.+|       
T Consensus      1063 glyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~----p~vWsqLAKAql~~G~~kEAIdsYiKA------- 1131 (1630)
T 1xi4_A         1063 ELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNE----PAVWSQLAKAQLQKGMVKEAIDSYIKA------- 1131 (1630)
T ss_pred             CCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCC----HHHHHHHHHHHHhCCCHHHHHHHHHhc-------
Confidence            566666666665432222222222233334444444444443    35677888888777 999999999886       


Q ss_pred             CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-------------CC---------cccHHHHHHHHHHHHH
Q 024043          106 GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-------------EV---------TTSANQCKQKVAQYAA  163 (273)
Q Consensus       106 g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~-------------~~---------~~~~~~~~~~~a~~~~  163 (273)
                      ++    ...+.++|.++...|++++|+++|..|.+.-+..             ++         .... ..+.++|..+.
T Consensus      1132 dD----~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~-ad~~~iGd~le 1206 (1630)
T 1xi4_A         1132 DD----PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNN-AHIQQVGDRCY 1206 (1630)
T ss_pred             CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCH-HHHHHHHHHHH
Confidence            33    3467789999999999999999998877543211             11         1111 23557888888


Q ss_pred             HhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHH
Q 024043          164 ELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER  218 (273)
Q Consensus       164 ~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~  218 (273)
                      ..|+|++|+.+|.++.               .+.+++.|+...|++..|.+++.+
T Consensus      1207 ~eg~YeeA~~~Y~kA~---------------ny~rLA~tLvkLge~q~AIEaarK 1246 (1630)
T 1xi4_A         1207 DEKMYDAAKLLYNNVS---------------NFGRLASTLVHLGEYQAAVDGARK 1246 (1630)
T ss_pred             hcCCHHHHHHHHHhhh---------------HHHHHHHHHHHhCCHHHHHHHHHH
Confidence            8888888888888762               345666777777777777666654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.09  E-value=1.7e-09  Score=79.38  Aligned_cols=118  Identities=12%  Similarity=0.113  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcc
Q 024043           71 EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT  149 (273)
Q Consensus        71 ~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~  149 (273)
                      .....+..+|.++... ++++|+.+|++++......      ..++..+|.++...|++++|+.++++++++...     
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-----   82 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD------AKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-----   82 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-----
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-----
Confidence            3455677777777666 8888888888887654322      567888888888889999999999998887532     


Q ss_pred             cHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcC
Q 024043          150 SANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKG  207 (273)
Q Consensus       150 ~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~g  207 (273)
                       ...++..+|.++..+|++++|+.+|++++...+.+       ...+..++.++...|
T Consensus        83 -~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           83 -FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC-------KEAADGYQRCMMAQY  132 (133)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG-------THHHHHHHHHHHHHT
T ss_pred             -chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc-------hHHHHHHHHHHHHhc
Confidence             23578888889999999999999998887654433       124455666665554

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.09  E-value=4.4e-10  Score=89.66  Aligned_cols=131  Identities=15%  Similarity=0.110  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHhcc-CHHHHHHHHHHH
Q 024043           30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESK----------HEAAQAYVDAAHCYKKT-SSNEAISCLEQA   98 (273)
Q Consensus        30 ~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----------~~aa~~~~~~~~~~~~~-~~~eA~~~~~~A   98 (273)
                      ...+..+...|..+...|+|++|+.+|.+++.+.....+.          .-...++.++|.+|... ++++|+.+++++
T Consensus        35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  114 (198)
T 2fbn_A           35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV  114 (198)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            3455667777999999999999999999999876543321          11257889999999887 999999999999


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHH
Q 024043           99 VNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSI  172 (273)
Q Consensus        99 l~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~  172 (273)
                      +.+....      ..++..+|.++..+|++++|+.+|++|+++....      ..++..++.++..++++.++.
T Consensus       115 l~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          115 LKIDKNN------VKALYKLGVANMYFGFLEEAKENLYKAASLNPNN------LDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             HHHSTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHHHHHC--
T ss_pred             HHhCccc------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHHHHHHHHH
Confidence            9985432      4689999999999999999999999999985432      467888999999888888777

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.08  E-value=4.3e-10  Score=88.11  Aligned_cols=160  Identities=13%  Similarity=0.031  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHH
Q 024043           36 FDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARY  114 (273)
Q Consensus        36 ~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~  114 (273)
                      +...|..+...|++++|+..|.+++.....      ...++..+|.++... ++++|+.++++++....   ++    ..
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p---~~----~~   75 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDELQS------RGDVKLAKADCLLETKQFELAQELLATIPLEYQ---DN----SY   75 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT------SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC---CH----HH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC---Ch----HH
Confidence            345678888899999999999999987643      246788899999877 99999999999876543   22    12


Q ss_pred             HHHHHHHH-HhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchh
Q 024043          115 YKEIAELY-ESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK  193 (273)
Q Consensus       115 l~~lg~~~-~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~  193 (273)
                      ....+.+. ...+...+|+..+++|+++.+..      ..++..+|.++...|++++|+..|++++...++.     ...
T Consensus        76 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~  144 (176)
T 2r5s_A           76 KSLIAKLELHQQAAESPELKRLEQELAANPDN------FELACELAVQYNQVGRDEEALELLWNILKVNLGA-----QDG  144 (176)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT-----TTT
T ss_pred             HHHHHHHHHHhhcccchHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-----ChH
Confidence            22223221 12233345799999999876432      4678999999999999999999999997544332     122


Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043          194 GHLLNAGICQLCKGDVVAITNALERY  219 (273)
Q Consensus       194 ~~~~~~gl~~l~~gd~~~A~~~~~~~  219 (273)
                      ..+..++.++...|+.+.|...+++.
T Consensus       145 ~a~~~l~~~~~~~g~~~~A~~~y~~a  170 (176)
T 2r5s_A          145 EVKKTFMDILSALGQGNAIASKYRRQ  170 (176)
T ss_dssp             HHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence            35677888999999999888888775

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.08  E-value=2.1e-09  Score=97.35  Aligned_cols=150  Identities=14%  Similarity=0.111  Sum_probs=111.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCC---------hhHHHHHHH
Q 024043           47 KSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR---------LSMAARYYK  116 (273)
Q Consensus        47 ~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~---------~~~~a~~l~  116 (273)
                      +++++|+..|.++....      ...+..+.+.|.++... ++++|+.+|++|+.+......         ....+.++.
T Consensus       248 ~~~~~A~~~~~~~~~~~------~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~  321 (457)
T 1kt0_A          248 KSFEKAKESWEMDTKEK------LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFL  321 (457)
T ss_dssp             EEEECCCCGGGSCHHHH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHH
T ss_pred             hhcccCcchhhcCHHHH------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHH
Confidence            34455555555544432      34567788888888777 899999999999988765431         223367999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHH
Q 024043          117 EIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHL  196 (273)
Q Consensus       117 ~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~  196 (273)
                      ++|.+|..+|++++|+.+|.+|+++....      ..++.++|.++..+|+|++|+..|++++...+++       ...+
T Consensus       322 nla~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~-------~~a~  388 (457)
T 1kt0_A          322 NLAMCYLKLREYTKAVECCDKALGLDSAN------EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN-------KAAR  388 (457)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----------CHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------HHHH
Confidence            99999999999999999999999986432      4679999999999999999999999997654443       2356


Q ss_pred             HHHHHHHHhcCCHHHHHHH
Q 024043          197 LNAGICQLCKGDVVAITNA  215 (273)
Q Consensus       197 ~~~gl~~l~~gd~~~A~~~  215 (273)
                      ..++.++...+++.++.+.
T Consensus       389 ~~l~~~~~~~~~~~~a~~~  407 (457)
T 1kt0_A          389 LQISMCQKKAKEHNERDRR  407 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            6778888888877766543

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.08  E-value=7.3e-10  Score=94.08  Aligned_cols=161  Identities=9%  Similarity=-0.063  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHH
Q 024043           36 FDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARY  114 (273)
Q Consensus        36 ~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~  114 (273)
                      +...|..+...|++++|...|.+++......      ..++..+|.++... ++++|+.++++++....   +   ....
T Consensus       120 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p---~---~~~~  187 (287)
T 3qou_A          120 XAQQAMQLMQESNYTDALPLLXDAWQLSNQN------GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ---D---TRYQ  187 (287)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC---S---HHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc------hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc---c---hHHH
Confidence            3456888889999999999999999875322      46788899999877 99999999999976543   1   2234


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhh
Q 024043          115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKG  194 (273)
Q Consensus       115 l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~  194 (273)
                      ....+..+...++.++|+..|++|++.....      ..++..+|.++...|++++|+..|++++...++.     ....
T Consensus       188 ~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~------~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~-----~~~~  256 (287)
T 3qou_A          188 GLVAQIELLXQAADTPEIQQLQQQVAENPED------AALATQLALQLHQVGRNEEALELLFGHLRXDLTA-----ADGQ  256 (287)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG-----GGGH
T ss_pred             HHHHHHHHHhhcccCccHHHHHHHHhcCCcc------HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc-----ccch
Confidence            5566666667788999999999999986532      4679999999999999999999999998765543     1234


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043          195 HLLNAGICQLCKGDVVAITNALERY  219 (273)
Q Consensus       195 ~~~~~gl~~l~~gd~~~A~~~~~~~  219 (273)
                      .+.+++.++...|+.+.|...+++.
T Consensus       257 a~~~l~~~~~~~g~~~~a~~~~r~a  281 (287)
T 3qou_A          257 TRXTFQEILAALGTGDALASXYRRQ  281 (287)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCcHHHHHHHH
Confidence            5678888899999988888877764

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.07  E-value=3.2e-10  Score=88.87  Aligned_cols=150  Identities=13%  Similarity=0.082  Sum_probs=109.3

Q ss_pred             HHHHHHHHHhhccccCCCCCHHHHHHHHHH--------------HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 024043            9 EEFEKKAEKKLNGWGLFGSKYEDAADLFDK--------------AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQ   74 (273)
Q Consensus         9 ~~l~~~Aek~~k~~~~~~~~~~~A~~~~~~--------------a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~   74 (273)
                      +.++..|...+.     .|++++|...|.+              .|.++...|++++|+.+|.++.....   ++    .
T Consensus         7 ~~~~~~a~~~~~-----~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p---~~----~   74 (176)
T 2r5s_A            7 EQLLKQVSELLQ-----QGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ---DN----S   74 (176)
T ss_dssp             TTHHHHHHHHHH-----TTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC---CH----H
T ss_pred             HHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC---Ch----H
Confidence            345555555444     2466677766664              37889999999999999999876542   22    1


Q ss_pred             HHHHHHHHH-hc-cCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHH
Q 024043           75 AYVDAAHCY-KK-TSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSAN  152 (273)
Q Consensus        75 ~~~~~~~~~-~~-~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~  152 (273)
                      .....+.+. .. .+..+|+.++++++.+.+..      ..++..+|.++...|++++|+.+|++++.+.+...+    .
T Consensus        75 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~  144 (176)
T 2r5s_A           75 YKSLIAKLELHQQAAESPELKRLEQELAANPDN------FELACELAVQYNQVGRDEEALELLWNILKVNLGAQD----G  144 (176)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTT----T
T ss_pred             HHHHHHHHHHHhhcccchHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccCh----H
Confidence            122223222 12 24456899999999876543      468999999999999999999999999988543321    2


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 024043          153 QCKQKVAQYAAELEQYHKSIEIYEEIAR  180 (273)
Q Consensus       153 ~~~~~~a~~~~~~g~y~~A~~~~~~~~~  180 (273)
                      .++..+|.++..+|++++|+..|++++.
T Consensus       145 ~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          145 EVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            5688999999999999999999999864

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.06  E-value=3.5e-09  Score=93.35  Aligned_cols=128  Identities=8%  Similarity=-0.021  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcC----------ChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043           73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIG----------RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADM  141 (273)
Q Consensus        73 a~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g----------~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~  141 (273)
                      +..+...|.++... ++++|+.+|++|+.+.....          .....+.++.++|.++..+|++++|+.+|++|+++
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            33455555555444 66666666666666544321          33455678889999999999999999999999987


Q ss_pred             HhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHH
Q 024043          142 FQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAIT  213 (273)
Q Consensus       142 ~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~  213 (273)
                      ...      ...++..+|.++..+|+|++|+..|++++...+++.       ..+..++.++...++..++.
T Consensus       303 ~p~------~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~-------~~~~~l~~~~~~~~~~~~a~  361 (370)
T 1ihg_A          303 DPS------NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK-------AIQAELLKVKQKIKAQKDKE  361 (370)
T ss_dssp             CTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred             Cch------hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHHHHHHHH
Confidence            432      246788899999999999999999999876555432       23344555555555555443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.06  E-value=3e-09  Score=96.34  Aligned_cols=135  Identities=14%  Similarity=0.181  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHH
Q 024043           32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLES---------KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNM  101 (273)
Q Consensus        32 A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~  101 (273)
                      .+..+...|+.+...|+|++|+.+|.+|+.+......         ....+.++.++|.||... ++++|+.+|++|+.+
T Consensus       267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  346 (457)
T 1kt0_A          267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL  346 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            3445667799999999999999999999998765421         223468899999999888 999999999999998


Q ss_pred             HHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHH-HHHHH
Q 024043          102 FCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIE-IYEEI  178 (273)
Q Consensus       102 ~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~-~~~~~  178 (273)
                      ....      +.++.++|.+|..+|++++|+.+|++|+++....      ..++..++.++..++++.+|.. .|++.
T Consensus       347 ~p~~------~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~------~~a~~~l~~~~~~~~~~~~a~~~~~~~~  412 (457)
T 1kt0_A          347 DSAN------EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN------KAARLQISMCQKKAKEHNERDRRIYANM  412 (457)
T ss_dssp             STTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----------CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCcc------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6543      5789999999999999999999999999985433      2568899999999999988875 34433

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.06  E-value=7.1e-09  Score=75.56  Aligned_cols=104  Identities=13%  Similarity=0.143  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC-cc
Q 024043           72 AAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV-TT  149 (273)
Q Consensus        72 aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~-~~  149 (273)
                      .+..+..+|.++... ++++|+.+|++++......      ..++.++|.++...|++++|+.+|++++.+...... ..
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~   76 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR   76 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH
Confidence            456677788888666 8888888888888764322      467888899988889999999999999988876432 23


Q ss_pred             cHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 024043          150 SANQCKQKVAQYAAELEQYHKSIEIYEEIARQ  181 (273)
Q Consensus       150 ~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~  181 (273)
                      ....++..+|.++...|++++|+++|++++..
T Consensus        77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            33677888999999999999999999888754

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.06  E-value=1.6e-09  Score=95.46  Aligned_cols=129  Identities=12%  Similarity=0.174  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHH
Q 024043           33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLE----------SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNM  101 (273)
Q Consensus        33 ~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~----------~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~  101 (273)
                      +..+...|+.+...|+|++|+.+|.+++.+.....          .....+.++.++|.+|... ++++|+.+|++|+++
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            34566779999999999999999999999766531          4456778999999999888 999999999999986


Q ss_pred             HHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHH
Q 024043          102 FCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIE  173 (273)
Q Consensus       102 ~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~  173 (273)
                      ...      -+.++.++|.+|..+|++++|+.+|++|+++....      ..++..++.++..+++++++..
T Consensus       303 ~p~------~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~------~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          303 DPS------NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED------KAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             CTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Cch------hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHH
Confidence            432      36789999999999999999999999999986532      3567888899988888887765

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.05  E-value=6.8e-09  Score=75.67  Aligned_cols=121  Identities=19%  Similarity=0.160  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc-CChh
Q 024043           32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI-GRLS  109 (273)
Q Consensus        32 A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~-g~~~  109 (273)
                      ....+...|.++...|++++|+.+|.+++.....      ...++..+|.++... ++++|+.++++++.+.... ++..
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~   76 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPT------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR   76 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH
Confidence            4556777899999999999999999999987422      246788999999777 9999999999999999875 5555


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHh
Q 024043          110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL  165 (273)
Q Consensus       110 ~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~  165 (273)
                      ..+.++.++|.++...|++++|+.+|++++++...       ......++.+...+
T Consensus        77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~~~l~~~~~~~  125 (131)
T 1elr_A           77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-------PDVLKKCQQAEKIL  125 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHH
Confidence            56889999999999999999999999999997531       23455555555443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.05  E-value=6.3e-09  Score=88.88  Aligned_cols=152  Identities=11%  Similarity=0.008  Sum_probs=116.8

Q ss_pred             HcCCH-------HHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHH
Q 024043           45 LAKSW-------DKAGATYVKLAN-CHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYY  115 (273)
Q Consensus        45 ~~~~~-------~~A~~~~~~a~~-~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l  115 (273)
                      ..|++       ++|..+|++|+. +..      .....+...|.++... ++++|...|++++.+...  ++   ..++
T Consensus        69 ~~g~~~~~~~~~~~A~~~~~rAl~~~~p------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~---~~~~  137 (308)
T 2ond_A           69 EKGDMNNAKLFSDEAANIYERAISTLLK------KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI--DP---TLVY  137 (308)
T ss_dssp             HTSCCHHHHHHHHHHHHHHHHHHTTTTT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS--CT---HHHH
T ss_pred             hccchhhcccchHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc--Cc---cHHH
Confidence            45775       899999999998 432      1235677888888766 999999999999985432  21   1288


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHhccchhhhchhh
Q 024043          116 KEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAA-ELEQYHKSIEIYEEIARQSLNNNLLKYGVKG  194 (273)
Q Consensus       116 ~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~-~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~  194 (273)
                      .++|.++...|++++|+..|++|++.....      ..++...+.+.. ..|++++|+.+|++++...+.+       ..
T Consensus       138 ~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~-------~~  204 (308)
T 2ond_A          138 IQYMKFARRAEGIKSGRMIFKKAREDARTR------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI-------PE  204 (308)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHTSTTCC------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC-------HH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HH
Confidence            999999999999999999999999864321      244555555533 3799999999999998766654       24


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          195 HLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       195 ~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      .+...+..+...|++.+|+..|++..
T Consensus       205 ~~~~~~~~~~~~g~~~~A~~~~~~al  230 (308)
T 2ond_A          205 YVLAYIDYLSHLNEDNNTRVLFERVL  230 (308)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            56777888889999999999998864

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.05  E-value=4.6e-09  Score=81.03  Aligned_cols=103  Identities=12%  Similarity=0.012  Sum_probs=88.8

Q ss_pred             CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          106 GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       106 g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                      ++....+..+..+|.++...|++++|+.+|++|+++....      ..++..+|.++..+|+|++|+..|++++...+.+
T Consensus         5 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~   78 (164)
T 3sz7_A            5 MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN------PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY   78 (164)
T ss_dssp             SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence            4456678899999999999999999999999999986532      4789999999999999999999999998765543


Q ss_pred             chhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 024043          186 NLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQD  221 (273)
Q Consensus       186 ~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~  221 (273)
                             ...++++|.++...|++..|..+|++...
T Consensus        79 -------~~~~~~lg~~~~~~g~~~~A~~~~~~al~  107 (164)
T 3sz7_A           79 -------SKAWSRLGLARFDMADYKGAKEAYEKGIE  107 (164)
T ss_dssp             -------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence                   34678899999999999999999998743

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.03  E-value=4.4e-09  Score=75.91  Aligned_cols=117  Identities=19%  Similarity=0.304  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcc
Q 024043           71 EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT  149 (273)
Q Consensus        71 ~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~  149 (273)
                      ..+.++..+|.++... ++++|+++|++++.....      ...++..+|.++...|++++|+.++++++.+....    
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----   76 (125)
T 1na0_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----   76 (125)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc----
Confidence            3466778888888776 999999999999876432      14578899999999999999999999999874321    


Q ss_pred             cHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhc
Q 024043          150 SANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCK  206 (273)
Q Consensus       150 ~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~  206 (273)
                        ..++..+|.++...|++++|+.+|++++...+.++       ..+..++.++...
T Consensus        77 --~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~  124 (125)
T 1na0_A           77 --AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA-------EAKQNLGNAKQKQ  124 (125)
T ss_dssp             --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHhc
Confidence              35788999999999999999999999876554432       2344555555443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.03  E-value=7e-09  Score=75.48  Aligned_cols=121  Identities=15%  Similarity=0.188  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCCh
Q 024043           30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL  108 (273)
Q Consensus        30 ~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~  108 (273)
                      ..-...+...|..+...|++++|+..|.+++.....  +    ..++..+|.++... ++++|+.++++++.+....   
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---   79 (131)
T 2vyi_A            9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA--N----AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY---   79 (131)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred             hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC--C----HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC---
Confidence            344566777899999999999999999999987432  1    56788899999777 9999999999999874332   


Q ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCH
Q 024043          109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQY  168 (273)
Q Consensus       109 ~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y  168 (273)
                         ..++..+|.++...|++++|+.+|++++++....      ..++..+|.++..+|++
T Consensus        80 ---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           80 ---SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN------ETYKSNLKIAELKLREA  130 (131)
T ss_dssp             ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHTTC
T ss_pred             ---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccc------hHHHHHHHHHHHHHhcC
Confidence               5689999999999999999999999999985432      35788999999988875

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.02  E-value=4.3e-09  Score=94.59  Aligned_cols=101  Identities=12%  Similarity=-0.023  Sum_probs=86.5

Q ss_pred             HcCCHHHHHHHHHHHHHHHHH-cC-CHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc--CChhHHHHHHHHHH
Q 024043           45 LAKSWDKAGATYVKLANCHLK-LE-SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI--GRLSMAARYYKEIA  119 (273)
Q Consensus        45 ~~~~~~~A~~~~~~a~~~~~~-~~-~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~--g~~~~~a~~l~~lg  119 (273)
                      ..|+|++|...|++++++.++ +| +....+.++.++|.+|... ++++|+.+|++++.++.+.  .+....|..++++|
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            457899999999999999874 44 4567889999999999877 9999999999999999764  45777889999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHHhcc
Q 024043          120 ELYESEHNIEQTIVFFEKAADMFQNE  145 (273)
Q Consensus       120 ~~~~~~g~~~~A~~~y~~Al~~~~~~  145 (273)
                      .+|..+|++++|..+|++|+++++..
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i~~~~  415 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAIMEVA  415 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998864

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.01  E-value=1.6e-08  Score=77.13  Aligned_cols=100  Identities=15%  Similarity=0.115  Sum_probs=85.4

Q ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchh
Q 024043          109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLL  188 (273)
Q Consensus       109 ~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~  188 (273)
                      .....++.++|.++...|++++|+.+|++++.+....      ..++..+|.++..+|+|++|+..|++++...++++  
T Consensus        18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~--   89 (148)
T 2vgx_A           18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD------SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP--   89 (148)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT--
T ss_pred             HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc--
Confidence            3456688899999999999999999999999885432      46789999999999999999999999987665543  


Q ss_pred             hhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 024043          189 KYGVKGHLLNAGICQLCKGDVVAITNALERYQD  221 (273)
Q Consensus       189 ~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~  221 (273)
                           ..++++|.++...|++..|..+|++...
T Consensus        90 -----~~~~~lg~~~~~~g~~~~A~~~~~~al~  117 (148)
T 2vgx_A           90 -----RFPFHAAECLLQXGELAEAESGLFLAQE  117 (148)
T ss_dssp             -----HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -----hHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                 3678899999999999999999988744

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.01  E-value=4.1e-09  Score=77.30  Aligned_cols=119  Identities=17%  Similarity=0.193  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChh
Q 024043           31 DAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLS  109 (273)
Q Consensus        31 ~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~  109 (273)
                      .-...+...|.++...|++++|+.+|.+++.....      ...++..+|.++... ++++|+.++++++.+...     
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-----   82 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK------DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-----   82 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-----
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-----
Confidence            33445556789999999999999999999876422      256788999999887 999999999999987543     


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcC
Q 024043          110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQ  167 (273)
Q Consensus       110 ~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~  167 (273)
                       ...++..+|.++...|++++|+.+|++++.+....      ..++..++.++..+|+
T Consensus        83 -~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           83 -FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC------KEAADGYQRCMMAQYN  133 (133)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG------THHHHHHHHHHHHHTC
T ss_pred             -chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHhcC
Confidence             24689999999999999999999999999986533      3567888888887764

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.00  E-value=7.1e-09  Score=93.16  Aligned_cols=136  Identities=10%  Similarity=0.087  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cC-CHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc
Q 024043           29 YEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLK-LE-SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI  105 (273)
Q Consensus        29 ~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~-~~-~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~  105 (273)
                      |..+.++.... .-+...|+|++|...+++++++..+ +| +....+.++.+++.+|... ++++|+.++++++.++.+.
T Consensus       284 ~~~~~~ll~~i-e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~  362 (429)
T 3qwp_A          284 WKEVQESLKKI-EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIF  362 (429)
T ss_dssp             HHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHH-HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHH
Confidence            34444444443 3455678999999999999988763 34 4567899999999999877 9999999999999999864


Q ss_pred             --CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-CC-cccHHHHHHHHHHHHHHh
Q 024043          106 --GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-EV-TTSANQCKQKVAQYAAEL  165 (273)
Q Consensus       106 --g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~-~~-~~~~~~~~~~~a~~~~~~  165 (273)
                        .+....|..+.++|.+|..+|++++|+.+|++|+++++.. |. +.....++.+++.+...+
T Consensus       363 lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          363 FPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             SCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             cCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence              5677789999999999999999999999999999999875 43 456667778888777654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.00  E-value=7.5e-09  Score=93.00  Aligned_cols=95  Identities=8%  Similarity=0.036  Sum_probs=85.4

Q ss_pred             CHHHHHHHHHHHHHHHHhc-C-ChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-C-CcccHHHHHHHHHHHH
Q 024043           87 SSNEAISCLEQAVNMFCDI-G-RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-E-VTTSANQCKQKVAQYA  162 (273)
Q Consensus        87 ~~~eA~~~~~~Al~~~~~~-g-~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~-~-~~~~~~~~~~~~a~~~  162 (273)
                      +|++|+..|++++++..+. | +....+.++.++|.+|..+|+|++|+.+|++|+++++.. | ++...+..++++|.+|
T Consensus       313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~  392 (433)
T 3qww_A          313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLY  392 (433)
T ss_dssp             CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence            8999999999999999763 4 456789999999999999999999999999999999975 3 4577889999999999


Q ss_pred             HHhcCHHHHHHHHHHHHHH
Q 024043          163 AELEQYHKSIEIYEEIARQ  181 (273)
Q Consensus       163 ~~~g~y~~A~~~~~~~~~~  181 (273)
                      ..+|+|++|..+|++++..
T Consensus       393 ~~qg~~~eA~~~~~~Al~i  411 (433)
T 3qww_A          393 MGLENKAAGEKALKKAIAI  411 (433)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HhccCHHHHHHHHHHHHHH
Confidence            9999999999999999643

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.99  E-value=4.1e-09  Score=78.20  Aligned_cols=100  Identities=19%  Similarity=0.184  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccH
Q 024043           73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSA  151 (273)
Q Consensus        73 a~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~  151 (273)
                      +..+..+|.++... ++++|+.+|++++.+....      +.++.++|.++...|++++|+.+|++++.+.+.      .
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------~   76 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV------AVYYTNRALCYLKMQQPEQALADCRRALELDGQ------S   76 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------C
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch------h
Confidence            56777888888776 9999999999998875443      458999999999999999999999999988643      2


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 024043          152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN  184 (273)
Q Consensus       152 ~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~  184 (273)
                      ..++..+|.++..+|++++|+..|++++...++
T Consensus        77 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           77 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence            467899999999999999999999999866555

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.98  E-value=2.8e-09  Score=90.39  Aligned_cols=152  Identities=15%  Similarity=0.061  Sum_probs=116.7

Q ss_pred             HHHHHHHHHhhccccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 024043            9 EEFEKKAEKKLNGWGLFGSKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQ   74 (273)
Q Consensus         9 ~~l~~~Aek~~k~~~~~~~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~   74 (273)
                      +.++..|...+.     .|++++|...|.++              |.++...|++++|...+.++.....   +.   ..
T Consensus       118 ~~~~~~a~~~~~-----~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p---~~---~~  186 (287)
T 3qou_A          118 ELXAQQAMQLMQ-----ESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ---DT---RY  186 (287)
T ss_dssp             HHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC---SH---HH
T ss_pred             hhHHHHHHHHHh-----CCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc---ch---HH
Confidence            344444444443     36888888888875              6789999999999999999876532   21   23


Q ss_pred             HHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHH
Q 024043           75 AYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ  153 (273)
Q Consensus        75 ~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~  153 (273)
                      ....++..+... +.++|+..|++++......      ..++.++|.++...|++++|+..|.+++.......    ...
T Consensus       187 ~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~------~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~----~~~  256 (287)
T 3qou_A          187 QGLVAQIELLXQAADTPEIQQLQQQVAENPED------AALATQLALQLHQVGRNEEALELLFGHLRXDLTAA----DGQ  256 (287)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGG----GGH
T ss_pred             HHHHHHHHHHhhcccCccHHHHHHHHhcCCcc------HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc----cch
Confidence            344445445444 7888999999999886543      34899999999999999999999999999865442    136


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 024043          154 CKQKVAQYAAELEQYHKSIEIYEEIARQ  181 (273)
Q Consensus       154 ~~~~~a~~~~~~g~y~~A~~~~~~~~~~  181 (273)
                      ++..++.++..+|+.++|+..|++++..
T Consensus       257 a~~~l~~~~~~~g~~~~a~~~~r~al~~  284 (287)
T 3qou_A          257 TRXTFQEILAALGTGDALASXYRRQLYA  284 (287)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence            7899999999999999999999998643

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.97  E-value=2e-08  Score=75.67  Aligned_cols=100  Identities=11%  Similarity=0.109  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhh
Q 024043          110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLK  189 (273)
Q Consensus       110 ~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~  189 (273)
                      .....+..+|.++...|++++|+.+|++++.+.+..      ..++..+|.++..+|+|++|+..|++++...+.++   
T Consensus        16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---   86 (142)
T 2xcb_A           16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD------ARYFLGLGACRQSLGLYEQALQSYSYGALMDINEP---   86 (142)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT---
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc---
Confidence            345678889999999999999999999999875422      46789999999999999999999999987666543   


Q ss_pred             hchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043          190 YGVKGHLLNAGICQLCKGDVVAITNALERYQDI  222 (273)
Q Consensus       190 ~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~l  222 (273)
                          ..++++|.++...|++..|...+++...+
T Consensus        87 ----~~~~~lg~~~~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           87 ----RFPFHAAECHLQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                35688999999999999999999987543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.96  E-value=1.4e-09  Score=92.01  Aligned_cols=101  Identities=14%  Similarity=0.206  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHH
Q 024043           34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAA  112 (273)
Q Consensus        34 ~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a  112 (273)
                      ..+...|..+...|++++|+.+|.+++.....      ....+.++|.+|... ++++|+.+|++++.+....      .
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~   72 (281)
T 2c2l_A            5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQS------V   72 (281)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC------H
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------H
Confidence            34556789999999999999999999987432      246888999999887 9999999999999874322      4


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q 024043          113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE  146 (273)
Q Consensus       113 ~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~  146 (273)
                      .++.++|.++..+|++++|+.+|++|+++.....
T Consensus        73 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  106 (281)
T 2c2l_A           73 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (281)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence            6899999999999999999999999999987653

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.95  E-value=6.9e-09  Score=76.12  Aligned_cols=105  Identities=10%  Similarity=0.068  Sum_probs=86.1

Q ss_pred             HHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHH
Q 024043           75 AYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ  153 (273)
Q Consensus        75 ~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~  153 (273)
                      .+...|.++... ++++|+.+|++++..+...   .....++..+|.++...|++++|+.+|++++..+....   ....
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~   77 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNG---VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD---KAAG   77 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSS---TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST---THHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC---cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc---ccHH
Confidence            345677777666 9999999999998876532   33457899999999999999999999999999875442   3457


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          154 CKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       154 ~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                      ++..+|.++..+|++++|+..|++++...+++
T Consensus        78 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  109 (129)
T 2xev_A           78 GLLKLGLSQYGEGKNTEAQQTLQQVATQYPGS  109 (129)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence            89999999999999999999999998766554

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.95  E-value=2.4e-08  Score=90.24  Aligned_cols=85  Identities=15%  Similarity=0.173  Sum_probs=39.8

Q ss_pred             HHHHHHcC---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-----CHHHHHHHHHHHHHHHHhcCChhHH
Q 024043           40 ANSFKLAK---SWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-----SSNEAISCLEQAVNMFCDIGRLSMA  111 (273)
Q Consensus        40 ~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-----~~~eA~~~~~~Al~~~~~~g~~~~~  111 (273)
                      |.+|...|   ++++|+..|.++++.-    +  ..+..+.++|.+|...     ++++|+.+|+++.     .|+    
T Consensus       183 g~~~~~~g~~~~~~~A~~~~~~aa~~g----~--~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----~g~----  247 (452)
T 3e4b_A          183 ATVYQKKQQPEQQAELLKQMEAGVSRG----T--VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----PGY----  247 (452)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHTT----C--SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----GGS----
T ss_pred             HHHHHHcCCcccHHHHHHHHHHHHHCC----C--HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----CCC----
Confidence            44555555   5566666666555431    1  1122334455555432     4555555555554     111    


Q ss_pred             HHHHHHHHHH-H--HhcCCHHHHHHHHHHHH
Q 024043          112 ARYYKEIAEL-Y--ESEHNIEQTIVFFEKAA  139 (273)
Q Consensus       112 a~~l~~lg~~-~--~~~g~~~~A~~~y~~Al  139 (273)
                      +.++.++|.+ +  ...+++++|+.+|++|+
T Consensus       248 ~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa  278 (452)
T 3e4b_A          248 PASWVSLAQLLYDFPELGDVEQMMKYLDNGR  278 (452)
T ss_dssp             THHHHHHHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence            2344555554 2  22355555555555554

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.94  E-value=3.1e-09  Score=78.27  Aligned_cols=96  Identities=7%  Similarity=-0.002  Sum_probs=75.5

Q ss_pred             HHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHH
Q 024043           76 YVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQC  154 (273)
Q Consensus        76 ~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~  154 (273)
                      +...|.++... ++++|+.+|++++.+....      +.++..+|.++...|++++|+.+|++|+++....      ..+
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~------~~~   87 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPER------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD------IAV   87 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Confidence            44566666555 8889999999888875543      4588899999999999999999999999885432      357


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 024043          155 KQKVAQYAAELEQYHKSIEIYEEIARQSL  183 (273)
Q Consensus       155 ~~~~a~~~~~~g~y~~A~~~~~~~~~~~~  183 (273)
                      +..+|.++..+|++++|+..|++++...+
T Consensus        88 ~~~la~~~~~~g~~~~A~~~~~~al~~~P  116 (121)
T 1hxi_A           88 HAALAVSHTNEHNANAALASLRAWLLSQP  116 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            88999999999999999999999875433

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.93  E-value=5.4e-08  Score=72.01  Aligned_cols=99  Identities=12%  Similarity=0.029  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhh
Q 024043          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY  190 (273)
Q Consensus       111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~  190 (273)
                      .+..+..+|.++...|++++|+.+|++++.+....      ..++..+|.++..+|+|++|+..|++++...+++     
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-----   76 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV------AVYYTNRALCYLKMQQPEQALADCRRALELDGQS-----   76 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh-----
Confidence            36788999999999999999999999999986432      4689999999999999999999999998755443     


Q ss_pred             chhhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043          191 GVKGHLLNAGICQLCKGDVVAITNALERYQDI  222 (273)
Q Consensus       191 ~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~l  222 (273)
                        ...++.+|.++...|++..|...+++...+
T Consensus        77 --~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           77 --VKAHFFLGQCQLEMESYDEAIANLQRAYSL  106 (137)
T ss_dssp             --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence              246788999999999999999999887543

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.92  E-value=3.2e-09  Score=94.87  Aligned_cols=190  Identities=11%  Similarity=0.084  Sum_probs=71.9

Q ss_pred             CCHHHHHHHHHHH---------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHH
Q 024043           27 SKYEDAADLFDKA---------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLE   96 (273)
Q Consensus        27 ~~~~~A~~~~~~a---------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~   96 (273)
                      +++++|++.|.++         +..+...|+|++|+.++..+.+.   .++    +.+...++.+|.+. ++.++.++++
T Consensus        46 g~~~eAIdsfika~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~---~~~----~~i~~~Li~~Y~Klg~l~e~e~f~~  118 (449)
T 1b89_A           46 GMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARE----SYVETELIFALAKTNRLAELEEFIN  118 (449)
T ss_dssp             ----------------------------------------------------------------------CHHHHTTTTT
T ss_pred             CCHHHHHHHHHcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---Ccc----chhHHHHHHHHHHhCCHHHHHHHHc
Confidence            5666666666654         33445566666666655555542   111    23344455555554 5555554443


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 024043           97 QAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYE  176 (273)
Q Consensus        97 ~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~  176 (273)
                      .          +..  .++.++|..+...|.+++|..+|.++              ..+.++|.++.++|+|++|++.|+
T Consensus       119 ~----------pn~--~a~~~IGd~~~~~g~yeeA~~~Y~~a--------------~n~~~LA~~L~~Lg~yq~AVea~~  172 (449)
T 1b89_A          119 G----------PNN--AHIQQVGDRCYDEKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGAR  172 (449)
T ss_dssp             C----------C------------------CTTTHHHHHHHT--------------TCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             C----------CcH--HHHHHHHHHHHHcCCHHHHHHHHHHh--------------hhHHHHHHHHHHhccHHHHHHHHH
Confidence            1          111  27888888888888888888888765              247778888888888888888888


Q ss_pred             HHHHH---------Hhccc---------hhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH-----------HHHHHHh
Q 024043          177 EIARQ---------SLNNN---------LLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ-----------DIAASMD  227 (273)
Q Consensus       177 ~~~~~---------~~~~~---------~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~-----------~ll~a~~  227 (273)
                      ++...         +....         ..-....+.+..++.+|...|.+++|...++...           .+--++.
T Consensus       173 KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~  252 (449)
T 1b89_A          173 KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS  252 (449)
T ss_dssp             HHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred             HcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            77311         00000         0000001112234456677777777777777643           2222345


Q ss_pred             hcCHhHHHHHHHhhhccCCCch
Q 024043          228 EEDIAKFTDVVKEFDSMTPLDP  249 (273)
Q Consensus       228 ~~d~~~~~~~~~~~~~~~~ld~  249 (273)
                      +=.++++.+.++.|-+-..+.|
T Consensus       253 ky~p~k~~ehl~~~~~~ini~k  274 (449)
T 1b89_A          253 KFKPQKMREHLELFWSRVNIPK  274 (449)
T ss_dssp             TTCHHHHHHHHHHHSTTSCHHH
T ss_pred             hcCHHHHHHHHHHHHHHhcCcH
Confidence            5667888888888877777766

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.92  E-value=2.5e-09  Score=83.36  Aligned_cols=123  Identities=15%  Similarity=0.164  Sum_probs=95.6

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH-H
Q 024043           45 LAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAEL-Y  122 (273)
Q Consensus        45 ~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~-~  122 (273)
                      ..|++++|+..+.+++....  .+    ..++..+|.+|... ++++|+.+|++++.+....      ..++..+|.+ +
T Consensus        22 ~~~~~~~A~~~~~~al~~~p--~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~l~   89 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRANP--QN----SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN------AELYAALATVLY   89 (177)
T ss_dssp             -----CCCCHHHHHHHHHCC--SC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC------HHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHhCC--Cc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHH
Confidence            35667777777777776532  11    35788899999777 9999999999999987543      4588999999 7


Q ss_pred             HhcCCH--HHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          123 ESEHNI--EQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       123 ~~~g~~--~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                      ...|++  ++|+.+|++++++....      ..++..+|.++...|++++|+..|++++...+.+
T Consensus        90 ~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  148 (177)
T 2e2e_A           90 YQASQHMTAQTRAMIDKALALDSNE------ITALMLLASDAFMQANYAQAIELWQKVMDLNSPR  148 (177)
T ss_dssp             HHTTTCCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred             HhcCCcchHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence            788999  99999999999985422      4678999999999999999999999998655443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.92  E-value=5.4e-09  Score=81.48  Aligned_cols=115  Identities=7%  Similarity=0.100  Sum_probs=95.6

Q ss_pred             CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHH-HHHh
Q 024043           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQY-AAEL  165 (273)
Q Consensus        87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~-~~~~  165 (273)
                      ++++|+.++++++......      +.++..+|.++...|++++|+.+|++++.+....      ..++..+|.+ +...
T Consensus        25 ~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~l~~~~   92 (177)
T 2e2e_A           25 NPEAQLQALQDKIRANPQN------SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN------AELYAALATVLYYQA   92 (177)
T ss_dssp             --CCCCHHHHHHHHHCCSC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC------HHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhc
Confidence            7889999999999875432      4589999999999999999999999999987532      4678899999 8899


Q ss_pred             cCH--HHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          166 EQY--HKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       166 g~y--~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      |++  ++|+.+|++++...+.+       ...++.+|.++...|++..|...+++..
T Consensus        93 ~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al  142 (177)
T 2e2e_A           93 SQHMTAQTRAMIDKALALDSNE-------ITALMLLASDAFMQANYAQAIELWQKVM  142 (177)
T ss_dssp             TTCCCHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            999  99999999998765543       2356788999999999999999988864

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.90  E-value=3.3e-09  Score=77.27  Aligned_cols=91  Identities=13%  Similarity=0.181  Sum_probs=73.4

Q ss_pred             CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc
Q 024043           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE  166 (273)
Q Consensus        87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g  166 (273)
                      ++++|+.+|++++.+.   .+....+.++.++|.++...|++++|+.+|++|+++.+..      ..++..+|.++..+|
T Consensus         5 ~~~~A~~~~~~al~~~---~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g   75 (117)
T 3k9i_A            5 LEAQAVPYYEKAIASG---LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH------QALRVFYAMVLYNLG   75 (117)
T ss_dssp             --CCCHHHHHHHHSSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHcC---CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHcC
Confidence            6788999999998752   1123456789999999999999999999999999986543      467889999999999


Q ss_pred             CHHHHHHHHHHHHHHHhccc
Q 024043          167 QYHKSIEIYEEIARQSLNNN  186 (273)
Q Consensus       167 ~y~~A~~~~~~~~~~~~~~~  186 (273)
                      ++++|+..|++++...++++
T Consensus        76 ~~~~A~~~~~~al~~~p~~~   95 (117)
T 3k9i_A           76 RYEQGVELLLKIIAETSDDE   95 (117)
T ss_dssp             CHHHHHHHHHHHHHHHCCCH
T ss_pred             CHHHHHHHHHHHHHhCCCcH
Confidence            99999999999987666553

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.90  E-value=3.2e-08  Score=88.91  Aligned_cols=108  Identities=3%  Similarity=-0.048  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHhc-C-ChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc--CCcc
Q 024043           74 QAYVDAAHCYKKTSSNEAISCLEQAVNMFCDI-G-RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE--EVTT  149 (273)
Q Consensus        74 ~~~~~~~~~~~~~~~~eA~~~~~~Al~~~~~~-g-~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~--~~~~  149 (273)
                      ..+..+..++...++++|+..|++++++..+. | +....+.++.++|.+|..+|++++|+.+|++++++++..  .++.
T Consensus       289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp  368 (429)
T 3qwp_A          289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP  368 (429)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence            34444555555569999999999999987543 3 455689999999999999999999999999999999874  3457


Q ss_pred             cHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 024043          150 SANQCKQKVAQYAAELEQYHKSIEIYEEIARQ  181 (273)
Q Consensus       150 ~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~  181 (273)
                      ..+..+.++|.+|..+|+|++|+.+|++++..
T Consensus       369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i  400 (429)
T 3qwp_A          369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI  400 (429)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            77899999999999999999999999999643

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.90  E-value=4.4e-08  Score=82.78  Aligned_cols=101  Identities=19%  Similarity=0.185  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccH
Q 024043           73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSA  151 (273)
Q Consensus        73 a~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~  151 (273)
                      +..+...|.++... ++++|+.+|++++.+....      +.++.++|.++..+|++++|+..|++|+++...      .
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~   71 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV------AVYYTNRALCYLKMQQPEQALADCRRALELDGQ------S   71 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT------C
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------C
Confidence            45677888888777 9999999999999975432      568999999999999999999999999987432      2


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       152 ~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                      ..++..+|.++..+|++++|+..|++++...+++
T Consensus        72 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           72 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            4678999999999999999999999998766655

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.90  E-value=2.1e-08  Score=71.58  Aligned_cols=100  Identities=13%  Similarity=0.160  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccH
Q 024043           73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSA  151 (273)
Q Consensus        73 a~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~  151 (273)
                      +..+...|.++... ++++|+.+|++++......      ..++..+|.++...|++++|+.++++++++...      .
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~   71 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD------W   71 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------C
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc------c
Confidence            45677788888766 9999999999998875432      458899999999999999999999999988542      2


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 024043          152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN  184 (273)
Q Consensus       152 ~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~  184 (273)
                      ..++..+|.++..+|++++|+..|++++...++
T Consensus        72 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~  104 (118)
T 1elw_A           72 GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN  104 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence            467899999999999999999999998754443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.89  E-value=1.1e-09  Score=99.91  Aligned_cols=125  Identities=14%  Similarity=0.129  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHH
Q 024043           74 QAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSAN  152 (273)
Q Consensus        74 ~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~  152 (273)
                      ..+.++|.++... ++++|+++|++|+++....      +.++.++|.++..+|++++|+.+|++|+++...      ..
T Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~------~~   74 (477)
T 1wao_1            7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSN------AIYYGNRSLAYLRTECYGYALGDATRAIELDKK------YI   74 (477)
T ss_dssp             TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT------CH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------CH
Confidence            3444455555544 7777777777777663322      456777777777777777777777777766321      13


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHH--HHhcCCHHHHHHHHH
Q 024043          153 QCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGIC--QLCKGDVVAITNALE  217 (273)
Q Consensus       153 ~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~--~l~~gd~~~A~~~~~  217 (273)
                      .++.++|.++..+|+|++|++.|++++...+++.       ..+..++.+  +...|++.+|...++
T Consensus        75 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~-------~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           75 KGYYRRAASNMALGKFRAALRDYETVVKVKPHDK-------DAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCT-------THHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            5566777777777777777777777765444332       123344444  555666666666655

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.89  E-value=1.6e-07  Score=84.82  Aligned_cols=156  Identities=14%  Similarity=0.049  Sum_probs=121.0

Q ss_pred             CHHHHHHHHHHH--------------HHHHHHc----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh---cc
Q 024043           28 KYEDAADLFDKA--------------ANSFKLA----KSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYK---KT   86 (273)
Q Consensus        28 ~~~~A~~~~~~a--------------~~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~---~~   86 (273)
                      ++++|..+|.++              |.+|...    +++++|+.+|.+++     .|+    ..++.++|.+|.   ..
T Consensus       194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----~g~----~~a~~~Lg~~~~~~~~~  264 (452)
T 3e4b_A          194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----PGY----PASWVSLAQLLYDFPEL  264 (452)
T ss_dssp             HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----GGS----THHHHHHHHHHHHSGGG
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----CCC----HHHHHHHHHHHHhCCCC
Confidence            899999999876              3444433    69999999999987     233    467889999843   23


Q ss_pred             -CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHH
Q 024043           87 -SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH-----NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQ  160 (273)
Q Consensus        87 -~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g-----~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~  160 (273)
                       ++++|+.+|++|++    .|+    +.++.++|.+|.. |     ++++|+.+|++|+     .++    ..++.++|.
T Consensus       265 ~d~~~A~~~~~~Aa~----~g~----~~A~~~Lg~~y~~-G~g~~~d~~~A~~~~~~Aa-----~g~----~~A~~~Lg~  326 (452)
T 3e4b_A          265 GDVEQMMKYLDNGRA----ADQ----PRAELLLGKLYYE-GKWVPADAKAAEAHFEKAV-----GRE----VAADYYLGQ  326 (452)
T ss_dssp             CCHHHHHHHHHHHHH----TTC----HHHHHHHHHHHHH-CSSSCCCHHHHHHHHHTTT-----TTC----HHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH----CCC----HHHHHHHHHHHHc-CCCCCCCHHHHHHHHHHHh-----CCC----HHHHHHHHH
Confidence             99999999999984    443    5688999999995 6     9999999999998     222    467899999


Q ss_pred             HHHH----hcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 024043          161 YAAE----LEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC----KGDVVAITNALERY  219 (273)
Q Consensus       161 ~~~~----~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~----~gd~~~A~~~~~~~  219 (273)
                      +|..    ..++++|+.+|++++.  .+       .....+++|.+|..    ..|+..|...++..
T Consensus       327 ~y~~G~g~~~d~~~A~~~~~~Aa~--~g-------~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A  384 (452)
T 3e4b_A          327 IYRRGYLGKVYPQKALDHLLTAAR--NG-------QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLA  384 (452)
T ss_dssp             HHHTTTTSSCCHHHHHHHHHHHHT--TT-------CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred             HHHCCCCCCcCHHHHHHHHHHHHh--hC-------hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence            8887    3499999999999964  22       23466788888764    45888888888775

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.89  E-value=1.2e-09  Score=78.05  Aligned_cols=99  Identities=11%  Similarity=0.074  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccH
Q 024043           73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSA  151 (273)
Q Consensus        73 a~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~  151 (273)
                      +..+..+|.++... ++++|+++|++++.+....      +.++.++|.++..+|++++|+.+|++|+++.+..+.....
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   77 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN------PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIR   77 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHH
Confidence            56778889888777 9999999999999875433      5689999999999999999999999999998776555555


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHH
Q 024043          152 NQCKQKVAQYAAELEQYHKSIEIYEE  177 (273)
Q Consensus       152 ~~~~~~~a~~~~~~g~y~~A~~~~~~  177 (273)
                      ..++..+|.++..+|+++.|++.+++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           78 SKLQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence            78889999999999988887766544

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.88  E-value=3.2e-08  Score=72.46  Aligned_cols=100  Identities=10%  Similarity=0.136  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchh
Q 024043          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK  193 (273)
Q Consensus       114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~  193 (273)
                      .+..+|.++...|++++|+..|++++..++..   .....++..+|.++...|+|++|+..|++++...++++    ...
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~   76 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNG---VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD----KAA   76 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSS---TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST----THH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC---cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc----ccH
Confidence            56788999999999999999999999887643   23457899999999999999999999999987655542    124


Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          194 GHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       194 ~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      ..++.+|.++...|++..|...+++..
T Consensus        77 ~~~~~la~~~~~~g~~~~A~~~~~~~~  103 (129)
T 2xev_A           77 GGLLKLGLSQYGEGKNTEAQQTLQQVA  103 (129)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            567889999999999999999988763

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.86  E-value=4e-08  Score=70.73  Aligned_cols=117  Identities=19%  Similarity=0.306  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhH
Q 024043           32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM  110 (273)
Q Consensus        32 A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~  110 (273)
                      ....+...|.++...|++++|...|.++......      ...++..+|.++... ++++|+.++++++.+....     
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-----   76 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-----   76 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-----
Confidence            3556677899999999999999999999876421      235778899999777 9999999999999874322     


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc
Q 024043          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE  166 (273)
Q Consensus       111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g  166 (273)
                       ..++..+|.++...|++++|+.+|++++.+....      ..++..+|.++...|
T Consensus        77 -~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           77 -AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAKQNLGNAKQKQG  125 (125)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHC
T ss_pred             -HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHhcc
Confidence             4578899999999999999999999999885422      356777888776654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.86  E-value=6.7e-08  Score=72.13  Aligned_cols=104  Identities=11%  Similarity=0.010  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccH
Q 024043           73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSA  151 (273)
Q Consensus        73 a~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~  151 (273)
                      +..+...|.++... ++++|+.+|++++.+.   .+......++.++|.++...|++++|+.+|++++.+....      
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------   98 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD---ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD------   98 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC------
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc---ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC------
Confidence            45666777777666 8888888888887653   2233346788899999999999999999999999875322      


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       152 ~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                      ..++..+|.++..+|++++|+.+|++++...+.+
T Consensus        99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  132 (148)
T 2dba_A           99 VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN  132 (148)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence            4678889999999999999999999987655443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.85  E-value=4e-09  Score=91.70  Aligned_cols=142  Identities=16%  Similarity=0.112  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC------CHHH-----HHHHHHHHHHHHhcc-CHHHHHHHHHHHH
Q 024043           32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLE------SKHE-----AAQAYVDAAHCYKKT-SSNEAISCLEQAV   99 (273)
Q Consensus        32 A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~-----aa~~~~~~~~~~~~~-~~~eA~~~~~~Al   99 (273)
                      .+..+...|+.+...|+|++|+.+|.+++.+.....      ....     ...++.++|.||... ++++|+.+|++++
T Consensus       178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al  257 (338)
T 2if4_A          178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL  257 (338)
T ss_dssp             HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            444555668888888899999999998887643211      0111     113788899999887 9999999999999


Q ss_pred             HHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Q 024043          100 NMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYA-AELEQYHKSIEIYEEI  178 (273)
Q Consensus       100 ~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~-~~~g~y~~A~~~~~~~  178 (273)
                      .+....      ..++.++|.+|..+|++++|+.+|++|+++....      ..++..++.+. ...+.++++...|.++
T Consensus       258 ~~~p~~------~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~------~~a~~~L~~l~~~~~~~~~~a~~~~~~~  325 (338)
T 2if4_A          258 TEEEKN------PKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD------KAIRRELRALAEQEKALYQKQKEMYKGI  325 (338)
T ss_dssp             HHCTTC------HHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------
T ss_pred             HhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            875432      4688999999999999999999999998886543      24456666663 3456778888888887


Q ss_pred             HHHHhcc
Q 024043          179 ARQSLNN  185 (273)
Q Consensus       179 ~~~~~~~  185 (273)
                      +...+.+
T Consensus       326 l~~~p~~  332 (338)
T 2if4_A          326 FKGKDEG  332 (338)
T ss_dssp             -------
T ss_pred             hCCCCCC
Confidence            6544443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.84  E-value=1.3e-09  Score=99.27  Aligned_cols=120  Identities=16%  Similarity=0.159  Sum_probs=93.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 024043           39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKE  117 (273)
Q Consensus        39 a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~  117 (273)
                      .|..+...|+|++|+.+|.+++++...      .+.++.++|.+|... ++++|+++|++|+++...      -+.++.+
T Consensus        12 lg~~~~~~g~~~~A~~~~~~Al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~------~~~~~~~   79 (477)
T 1wao_1           12 QANDYFKAKDYENAIKFYSQAIELNPS------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK------YIKGYYR   79 (477)
T ss_dssp             SSSSTTTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT------CHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------CHHHHHH
Confidence            355666778888888888888877422      267889999999888 999999999999987432      2568999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHH--HHHhcCHHHHHHHHH
Q 024043          118 IAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQY--AAELEQYHKSIEIYE  176 (273)
Q Consensus       118 lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~--~~~~g~y~~A~~~~~  176 (273)
                      +|.+|..+|++++|+.+|++|+++.....      .++..++.+  +...|++++|++.++
T Consensus        80 lg~~~~~~g~~~eA~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           80 RAASNMALGKFRAALRDYETVVKVKPHDK------DAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHSTTCT------THHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999999999999999865432      345666766  888999999999999

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.84  E-value=4e-08  Score=72.19  Aligned_cols=94  Identities=11%  Similarity=0.004  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchh
Q 024043          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK  193 (273)
Q Consensus       114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~  193 (273)
                      .+..+|..+...|++++|+..|++|+.+....      ..++..+|.++..+|++++|+..|++++...+++.       
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~-------   85 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI-------   85 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------
Confidence            46778999999999999999999999986432      46789999999999999999999999987666542       


Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          194 GHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       194 ~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      ..+..+|.++...|++.+|...+++..
T Consensus        86 ~~~~~la~~~~~~g~~~~A~~~~~~al  112 (121)
T 1hxi_A           86 AVHAALAVSHTNEHNANAALASLRAWL  112 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            366788999999999999999888753

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.82  E-value=1.3e-07  Score=67.35  Aligned_cols=96  Identities=11%  Similarity=-0.011  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhh
Q 024043          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY  190 (273)
Q Consensus       111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~  190 (273)
                      .+..+..+|.++...|++++|+.+|++++...+..      ..++..+|.++...|++++|+..+++++...+.+     
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-----   71 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-----   71 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc-----
Confidence            35678899999999999999999999999886432      4678999999999999999999999998654433     


Q ss_pred             chhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043          191 GVKGHLLNAGICQLCKGDVVAITNALERY  219 (273)
Q Consensus       191 ~~~~~~~~~gl~~l~~gd~~~A~~~~~~~  219 (273)
                        ...+..+|.++...|++..|...+++.
T Consensus        72 --~~~~~~~a~~~~~~~~~~~A~~~~~~~   98 (118)
T 1elw_A           72 --GKGYSRKAAALEFLNRFEEAKRTYEEG   98 (118)
T ss_dssp             --HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence              245678899999999999999988876

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.81  E-value=3.1e-09  Score=75.45  Aligned_cols=98  Identities=9%  Similarity=0.076  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHH
Q 024043           74 QAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSAN  152 (273)
Q Consensus        74 ~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~  152 (273)
                      ..+..+|.++... ++++|+.+|++++.+....      ..++.++|.++...|++++|+.+|++++++....    ...
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~   76 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE------SKYWLMKGKALYNLERYEEAVDCYNYVINVIEDE----YNK   76 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCT----TCH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc----chH
Confidence            3456778888776 9999999999998875322      4578899999999999999999999999885430    124


Q ss_pred             HHHHHHHHHHHHh-cCHHHHHHHHHHHHHH
Q 024043          153 QCKQKVAQYAAEL-EQYHKSIEIYEEIARQ  181 (273)
Q Consensus       153 ~~~~~~a~~~~~~-g~y~~A~~~~~~~~~~  181 (273)
                      .++..+|.++..+ |++++|++++++++..
T Consensus        77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           77 DVWAAKADALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             HHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence            6789999999999 9999999999998643

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.81  E-value=6.6e-09  Score=90.35  Aligned_cols=110  Identities=14%  Similarity=0.044  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcC------ChhHH-----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 024043           70 HEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIG------RLSMA-----ARYYKEIAELYESEHNIEQTIVFFEK  137 (273)
Q Consensus        70 ~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g------~~~~~-----a~~l~~lg~~~~~~g~~~~A~~~y~~  137 (273)
                      ...+..+...|.++... ++++|+.+|++|+.+.....      +...+     ..++.++|.+|..+|++++|+.+|++
T Consensus       176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~  255 (338)
T 2if4_A          176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI  255 (338)
T ss_dssp             HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            34567788899999877 99999999999998754321      11111     13899999999999999999999999


Q ss_pred             HHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          138 AADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       138 Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                      |+++...      ...++.++|.++..+|+|++|+..|++++...+++
T Consensus       256 al~~~p~------~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~  297 (338)
T 2if4_A          256 VLTEEEK------NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD  297 (338)
T ss_dssp             HHHHCTT------CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----
T ss_pred             HHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence            9998542      24679999999999999999999999997554443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.81  E-value=5.7e-08  Score=73.18  Aligned_cols=108  Identities=13%  Similarity=0.238  Sum_probs=88.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh-
Q 024043           47 KSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES-  124 (273)
Q Consensus        47 ~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~-  124 (273)
                      +++++|+..|.++++.    |++..    .  +|.+|... .+++|+++|++|.+.    |+    +.+..++|.+|.. 
T Consensus         9 ~d~~~A~~~~~~aa~~----g~~~a----~--lg~~y~~g~~~~~A~~~~~~Aa~~----g~----~~a~~~Lg~~y~~G   70 (138)
T 1klx_A            9 KDLKKAIQYYVKACEL----NEMFG----C--LSLVSNSQINKQKLFQYLSKACEL----NS----GNGCRFLGDFYENG   70 (138)
T ss_dssp             HHHHHHHHHHHHHHHT----TCTTH----H--HHHHTCTTSCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHcC----CCHhh----h--HHHHHHcCCCHHHHHHHHHHHHcC----CC----HHHHHHHHHHHHcC
Confidence            4677788888887754    34322    2  89999887 888899999999874    44    5788999999998 


Q ss_pred             ---cCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHH
Q 024043          125 ---EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAE----LEQYHKSIEIYEEIAR  180 (273)
Q Consensus       125 ---~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~----~g~y~~A~~~~~~~~~  180 (273)
                         .+++++|+.+|++|++.    ++    ..++.++|.+|..    .+++++|+++|+++..
T Consensus        71 ~g~~~d~~~A~~~~~~Aa~~----g~----~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~  125 (138)
T 1klx_A           71 KYVKKDLRKAAQYYSKACGL----ND----QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR  125 (138)
T ss_dssp             SSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCccHHHHHHHHHHHHcC----CC----HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence               78999999999999875    32    4678999999999    8999999999999964

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.80  E-value=4.5e-08  Score=87.42  Aligned_cols=189  Identities=8%  Similarity=0.032  Sum_probs=84.8

Q ss_pred             HhhHHHHHHHHHHhhcccc-----CCC-CCHHHHHHHHHHHH-------------HHHHHcCCHHHHHHHHHHHHHHHHH
Q 024043            5 IARAEEFEKKAEKKLNGWG-----LFG-SKYEDAADLFDKAA-------------NSFKLAKSWDKAGATYVKLANCHLK   65 (273)
Q Consensus         5 ~~~a~~l~~~Aek~~k~~~-----~~~-~~~~~A~~~~~~a~-------------~~~~~~~~~~~A~~~~~~a~~~~~~   65 (273)
                      +++|.+.+-+++-.- ++.     .-. |+|++|..++..+-             .+|...|+++++.+++..       
T Consensus        48 ~~eAIdsfika~D~~-~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-------  119 (449)
T 1b89_A           48 VKEAIDSYIKADDPS-SYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFING-------  119 (449)
T ss_dssp             --------------------------------------------------------------CHHHHTTTTTC-------
T ss_pred             HHHHHHHHHcCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcC-------
Confidence            566666666554322 211     111 78888888776542             367777777776665532       


Q ss_pred             cCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH--
Q 024043           66 LESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMF--  142 (273)
Q Consensus        66 ~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~--  142 (273)
                       ++  .  .++..+|..+... .+++|+.+|.++              ..+.++|.++..+|++++|++.|++|...-  
T Consensus       120 -pn--~--~a~~~IGd~~~~~g~yeeA~~~Y~~a--------------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~W  180 (449)
T 1b89_A          120 -PN--N--AHIQQVGDRCYDEKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTW  180 (449)
T ss_dssp             -C--------------------CTTTHHHHHHHT--------------TCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHH
T ss_pred             -Cc--H--HHHHHHHHHHHHcCCHHHHHHHHHHh--------------hhHHHHHHHHHHhccHHHHHHHHHHcCCchhH
Confidence             11  1  2778888888666 888888888866              257788888888888888888888873220  


Q ss_pred             h-------ccCC----------cccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHh
Q 024043          143 Q-------NEEV----------TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC  205 (273)
Q Consensus       143 ~-------~~~~----------~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~  205 (273)
                      .       ..++          ....+.-+..+..+|.+.|++++|+.+++.++...       ......+..+++++..
T Consensus       181 k~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-------~ah~~~ftel~il~~k  253 (449)
T 1b89_A          181 KEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-------RAHMGMFTELAILYSK  253 (449)
T ss_dssp             HHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-------TCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-------HHHHHHHHHHHHHHHh
Confidence            0       0000          00001123345578899999999999999885321       1234466777776655


Q ss_pred             cCCHHHHHHHHHHHH------HHHHHHhh
Q 024043          206 KGDVVAITNALERYQ------DIAASMDE  228 (273)
Q Consensus       206 ~gd~~~A~~~~~~~~------~ll~a~~~  228 (273)
                      - .+++..++++-|.      ++|.+++.
T Consensus       254 y-~p~k~~ehl~~~~~~ini~k~~~~~~~  281 (449)
T 1b89_A          254 F-KPQKMREHLELFWSRVNIPKVLRAAEQ  281 (449)
T ss_dssp             T-CHHHHHHHHHHHSTTSCHHHHHHHHHT
T ss_pred             c-CHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            4 5777778877765      56666554

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.80  E-value=1.4e-07  Score=86.44  Aligned_cols=164  Identities=11%  Similarity=0.086  Sum_probs=116.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 024043           40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI  118 (273)
Q Consensus        40 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~l  118 (273)
                      +.++...|++++|...|++++.+..  .+   ...++...+.++... ++++|+..|++|+.....      ....+...
T Consensus       328 ~~~~~~~g~~~~A~~~~~~al~~~p--~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~------~~~~~~~~  396 (530)
T 2ooe_A          328 ADYEESRMKYEKVHSIYNRLLAIED--ID---PTLVYIQYMKFARRAEGIKSGRMIFKKAREDART------RHHVYVTA  396 (530)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHSSS--SC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC------CTHHHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHHhCccc--cC---chHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC------chHHHHHH
Confidence            4567788999999999999987521  12   134777888887666 899999999999875221      12233333


Q ss_pred             HHH-HHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHH
Q 024043          119 AEL-YESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLL  197 (273)
Q Consensus       119 g~~-~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (273)
                      +.+ +...|++++|...|++|++.+...      ..++..++.++...|++++|..+|++++...+.++   ......+.
T Consensus       397 a~~~~~~~~~~~~A~~~~e~al~~~p~~------~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~---~~~~~lw~  467 (530)
T 2ooe_A          397 ALMEYYCSKDKSVAFKIFELGLKKYGDI------PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP---EKSGEIWA  467 (530)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG---GGCHHHHH
T ss_pred             HHHHHHHcCChhHHHHHHHHHHHHCCCC------HHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH---HHHHHHHH
Confidence            333 345799999999999999987532      46789999999999999999999999975432221   11222344


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHH
Q 024043          198 NAGICQLCKGDVVAITNALERYQDIA  223 (273)
Q Consensus       198 ~~gl~~l~~gd~~~A~~~~~~~~~ll  223 (273)
                      ..+......||...+..+..+.....
T Consensus       468 ~~~~~e~~~G~~~~~~~~~~r~~~~~  493 (530)
T 2ooe_A          468 RFLAFESNIGDLASILKVEKRRFTAF  493 (530)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            44444566799999998888875544

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=98.80  E-value=2.1e-05  Score=69.44  Aligned_cols=220  Identities=10%  Similarity=0.043  Sum_probs=165.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHHhcCChhHHHH
Q 024043           36 FDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT--SSNEAISCLEQAVNMFCDIGRLSMAAR  113 (273)
Q Consensus        36 ~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~--~~~eA~~~~~~Al~~~~~~g~~~~~a~  113 (273)
                      ..+.|.+|...|++++-.++.......+... ...-++.....+-+.+...  ..+.-++.+..+++-.........-.+
T Consensus        22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~  100 (394)
T 3txn_A           22 ILQQGELYKQEGKAKELADLIKVTRPFLSSI-SKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS  100 (394)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGS-CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456899999999998888887776665444 3456777778888888776  667778888888888777777776777


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH--h-ccchhhh
Q 024043          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS--L-NNNLLKY  190 (273)
Q Consensus       114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~--~-~~~~~~~  190 (273)
                      .-.++|.+|...|+|.+|...+.+...-....++.....+++..-..+|..++++.++...|.++....  + .+|   .
T Consensus       101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p---~  177 (394)
T 3txn_A          101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPP---K  177 (394)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH---H
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCH---H
Confidence            778999999999999999999999999888877767777888888899999999999999999985332  2 111   1


Q ss_pred             chhhHHHHHHHHHH-hcCCHHHHHHHHHH----HH---------------------------------------------
Q 024043          191 GVKGHLLNAGICQL-CKGDVVAITNALER----YQ---------------------------------------------  220 (273)
Q Consensus       191 ~~~~~~~~~gl~~l-~~gd~~~A~~~~~~----~~---------------------------------------------  220 (273)
                      -........|+.|+ ..+|+..|...|-+    |.                                             
T Consensus       178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~  257 (394)
T 3txn_A          178 VQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDID  257 (394)
T ss_dssp             HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHH
T ss_pred             HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHH
Confidence            12233345588888 88888888554432    11                                             


Q ss_pred             ---HHHHHHhhcCHhHHHHHHHhhhccCCCchhHHHHHHHHH
Q 024043          221 ---DIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVK  259 (273)
Q Consensus       221 ---~ll~a~~~~d~~~~~~~~~~~~~~~~ld~~~~~~l~~~~  259 (273)
                         .++.++..++...|...+..|......||+...-+..+.
T Consensus       258 ~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~  299 (394)
T 3txn_A          258 AMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLY  299 (394)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence               356678888888899999888777777888654444433

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.77  E-value=6.4e-08  Score=81.70  Aligned_cols=139  Identities=9%  Similarity=-0.071  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhH
Q 024043           32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM  110 (273)
Q Consensus        32 A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~  110 (273)
                      .-++.-.-+.++...|+|++|.+.|.....     +.+...  .....|.++.+. ++++|+.+|+++..    ..++..
T Consensus       101 r~dl~LayA~~L~~~g~y~eA~~~l~~~~~-----~~p~~~--~~~~~a~l~~~~~r~~dA~~~l~~a~~----~~d~~~  169 (282)
T 4f3v_A          101 PLAITMGFAACEAAQGNYADAMEALEAAPV-----AGSEHL--VAWMKAVVYGAAERWTDVIDQVKSAGK----WPDKFL  169 (282)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTSSCC-----TTCHHH--HHHHHHHHHHHTTCHHHHHHHHTTGGG----CSCHHH
T ss_pred             HhHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----cCCchH--HHHHHHHHHHHcCCHHHHHHHHHHhhc----cCCccc
Confidence            344444557889999999999999887765     233333  555666677666 99999999986643    224445


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 024043          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN  184 (273)
Q Consensus       111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~  184 (273)
                      ...+...+|.++..+|++++|+.+|++|+.   ....+......+...|.++.++|+.++|...|+++....++
T Consensus       170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~---g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          170 AGAAGVAHGVAAANLALFTEAERRLTEAND---SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHhc---CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence            567899999999999999999999999983   11113336678999999999999999999999999765443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.76  E-value=1.3e-07  Score=70.44  Aligned_cols=103  Identities=13%  Similarity=0.130  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHH
Q 024043           33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMA  111 (273)
Q Consensus        33 ~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~  111 (273)
                      ...+...|..+...|++++|+.+|.+++...   .+......++..+|.+|... ++++|+.++++++.+....      
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------   98 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD---ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD------   98 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC------
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc---ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC------
Confidence            4455667999999999999999999998753   34445578899999999887 9999999999999875432      


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (273)
Q Consensus       112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~  144 (273)
                      ..++..+|.++...|++++|+.+|++++++...
T Consensus        99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  131 (148)
T 2dba_A           99 VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK  131 (148)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            568899999999999999999999999998643

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.74  E-value=2e-08  Score=72.97  Aligned_cols=92  Identities=14%  Similarity=0.092  Sum_probs=74.3

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 024043           45 LAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYE  123 (273)
Q Consensus        45 ~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~  123 (273)
                      ..|++++|+.+|.+++++.   .+......++.++|.+|... ++++|+.+|++++.+.+..      ..++.++|.++.
T Consensus         2 ~~g~~~~A~~~~~~al~~~---~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~   72 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASG---LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH------QALRVFYAMVLY   72 (117)
T ss_dssp             -----CCCHHHHHHHHSSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcC---CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHH
Confidence            3578899999999998752   12345678899999999887 9999999999999986554      568999999999


Q ss_pred             hcCCHHHHHHHHHHHHHHHhcc
Q 024043          124 SEHNIEQTIVFFEKAADMFQNE  145 (273)
Q Consensus       124 ~~g~~~~A~~~y~~Al~~~~~~  145 (273)
                      ..|++++|+.+++++++.....
T Consensus        73 ~~g~~~~A~~~~~~al~~~p~~   94 (117)
T 3k9i_A           73 NLGRYEQGVELLLKIIAETSDD   94 (117)
T ss_dssp             HHTCHHHHHHHHHHHHHHHCCC
T ss_pred             HcCCHHHHHHHHHHHHHhCCCc
Confidence            9999999999999999987643

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.73  E-value=5.6e-08  Score=68.72  Aligned_cols=96  Identities=19%  Similarity=0.110  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhch
Q 024043          113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGV  192 (273)
Q Consensus       113 ~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~  192 (273)
                      .++..+|.++...|++++|+.+|++++++....      ..++..+|.++..+|++++|+.+|++++...+.     ...
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~   75 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE------SKYWLMKGKALYNLERYEEAVDCYNYVINVIED-----EYN   75 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC-----TTC
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-----cch
Confidence            467789999999999999999999999985432      467899999999999999999999999764433     012


Q ss_pred             hhHHHHHHHHHHhc-CCHHHHHHHHHHH
Q 024043          193 KGHLLNAGICQLCK-GDVVAITNALERY  219 (273)
Q Consensus       193 ~~~~~~~gl~~l~~-gd~~~A~~~~~~~  219 (273)
                      ...+..++.++... |++.+|.+++++.
T Consensus        76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~  103 (112)
T 2kck_A           76 KDVWAAKADALRYIEGKEVEAEIAEARA  103 (112)
T ss_dssp             HHHHHHHHHHHTTCSSCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            34678889999999 9999999998875

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.69  E-value=6.4e-07  Score=67.32  Aligned_cols=114  Identities=12%  Similarity=0.145  Sum_probs=91.5

Q ss_pred             CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHH--
Q 024043           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAE--  164 (273)
Q Consensus        87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~--  164 (273)
                      ++++|+.+|++|.+    .|++...      +|.+|...+.+++|+++|++|++.    ++    ..++.++|.+|..  
T Consensus        10 d~~~A~~~~~~aa~----~g~~~a~------lg~~y~~g~~~~~A~~~~~~Aa~~----g~----~~a~~~Lg~~y~~G~   71 (138)
T 1klx_A           10 DLKKAIQYYVKACE----LNEMFGC------LSLVSNSQINKQKLFQYLSKACEL----NS----GNGCRFLGDFYENGK   71 (138)
T ss_dssp             HHHHHHHHHHHHHH----TTCTTHH------HHHHTCTTSCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHCS
T ss_pred             CHHHHHHHHHHHHc----CCCHhhh------HHHHHHcCCCHHHHHHHHHHHHcC----CC----HHHHHHHHHHHHcCC
Confidence            78999999999975    4554433      999999988899999999999976    22    4678999999998  


Q ss_pred             --hcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHHhhcCHhH
Q 024043          165 --LEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC----KGDVVAITNALERYQDIAASMDEEDIAK  233 (273)
Q Consensus       165 --~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~----~gd~~~A~~~~~~~~~ll~a~~~~d~~~  233 (273)
                        .+++++|+++|+++...  +       ....++++|.+|..    .+|+.+|...+++.      .+.|+.+.
T Consensus        72 g~~~d~~~A~~~~~~Aa~~--g-------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A------a~~g~~~A  131 (138)
T 1klx_A           72 YVKKDLRKAAQYYSKACGL--N-------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA------CRLGSEDA  131 (138)
T ss_dssp             SSCCCHHHHHHHHHHHHHT--T-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH------HHTTCHHH
T ss_pred             CCCccHHHHHHHHHHHHcC--C-------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH------HHCCCHHH
Confidence              88999999999999742  2       23467889999888    88999999988875      44555543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.68  E-value=5.6e-08  Score=69.08  Aligned_cols=95  Identities=11%  Similarity=0.010  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhh
Q 024043          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY  190 (273)
Q Consensus       111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~  190 (273)
                      .+..+..+|.++...|++++|+.+|++|+++.+..      ..++.++|.++..+|+|++|++.|++++...+++.. ..
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~   75 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN------PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEH-VA   75 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTS-HH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccH-HH
Confidence            35688999999999999999999999999985432      467899999999999999999999999865444311 11


Q ss_pred             chhhHHHHHHHHHHhcCCHHHH
Q 024043          191 GVKGHLLNAGICQLCKGDVVAI  212 (273)
Q Consensus       191 ~~~~~~~~~gl~~l~~gd~~~A  212 (273)
                      .....++.+|.++...|++..|
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~a   97 (111)
T 2l6j_A           76 IRSKLQYRLELAQGAVGSVQIP   97 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHhHhhh
Confidence            1244566777777777655443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.67  E-value=2.6e-07  Score=84.72  Aligned_cols=151  Identities=11%  Similarity=0.006  Sum_probs=113.9

Q ss_pred             cCCHH-------HHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 024043           46 AKSWD-------KAGATYVKLAN-CHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYK  116 (273)
Q Consensus        46 ~~~~~-------~A~~~~~~a~~-~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~  116 (273)
                      .|+++       +|...|++|+. +..      .....+...+.++... ++++|...|++++.+..     ...+.++.
T Consensus       292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p------~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~  360 (530)
T 2ooe_A          292 KGDMNNAKLFSDEAANIYERAISTLLK------KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED-----IDPTLVYI  360 (530)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTTTCS------SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-----SCHHHHHH
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccc-----cCchHHHH
Confidence            68876       88888888876 321      2245677788888766 99999999999998522     12235899


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHHhccchhhhchhhH
Q 024043          117 EIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQY-AAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGH  195 (273)
Q Consensus       117 ~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~-~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~  195 (273)
                      +.|.++...|++++|...|++|++....     . ...+...+.+ +...|++++|..+|++++...++++       ..
T Consensus       361 ~~~~~~~~~~~~~~A~~~~~~Al~~~~~-----~-~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~-------~~  427 (530)
T 2ooe_A          361 QYMKFARRAEGIKSGRMIFKKAREDART-----R-HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP-------EY  427 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCTTC-----C-THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCH-------HH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhccCC-----c-hHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCH-------HH
Confidence            9999998889999999999999976332     1 2334444444 3468999999999999987666542       35


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          196 LLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       196 ~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      +...+......|+..+|+..|++..
T Consensus       428 ~~~~~~~~~~~g~~~~Ar~~~~~al  452 (530)
T 2ooe_A          428 VLAYIDYLSHLNEDNNTRVLFERVL  452 (530)
T ss_dssp             HHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHhhHHHHHHHHH
Confidence            6677777888999999999999874

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.67  E-value=3.2e-07  Score=62.62  Aligned_cols=86  Identities=16%  Similarity=0.248  Sum_probs=66.1

Q ss_pred             hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccch
Q 024043          108 LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNL  187 (273)
Q Consensus       108 ~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~  187 (273)
                      +...+.++..+|.++...|++++|+.+|++|+++....      ..++..+|.++...|++++|+.+|++++...+++. 
T Consensus         5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~-   77 (91)
T 1na3_A            5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA-   77 (91)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-
T ss_pred             ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCH-
Confidence            34556788899999999999999999999999875322      46788999999999999999999999976544432 


Q ss_pred             hhhchhhHHHHHHHHHHhc
Q 024043          188 LKYGVKGHLLNAGICQLCK  206 (273)
Q Consensus       188 ~~~~~~~~~~~~gl~~l~~  206 (273)
                            ..+.++|.++...
T Consensus        78 ------~~~~~l~~~~~~~   90 (91)
T 1na3_A           78 ------EAKQNLGNAKQKQ   90 (91)
T ss_dssp             ------HHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHhc
Confidence                  3455666666544

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=98.63  E-value=5.6e-05  Score=64.86  Aligned_cols=230  Identities=10%  Similarity=0.047  Sum_probs=164.3

Q ss_pred             hHHHHHHHHHHhhccccCCCCCH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 024043            7 RAEEFEKKAEKKLNGWGLFGSKY---EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCY   83 (273)
Q Consensus         7 ~a~~l~~~Aek~~k~~~~~~~~~---~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~   83 (273)
                      +-++.+.+-++++.     .|+|   =+|-+.|.-..+-|...++|++|++.....+..+-+.+....++..-.-+..+|
T Consensus        11 ~~~~~i~rl~~~I~-----~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy   85 (336)
T 3lpz_A           11 KIERIIARLQRRIA-----EGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTF   85 (336)
T ss_dssp             HHHHHHHHHHHHHH-----HCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh-----CCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHH
Confidence            44555666666555     3699   899999999999999999999999999999999989998888887777777888


Q ss_pred             hcc--CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC-cccHHHHHHHHHH
Q 024043           84 KKT--SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV-TTSANQCKQKVAQ  160 (273)
Q Consensus        84 ~~~--~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~-~~~~~~~~~~~a~  160 (273)
                      .+.  .+++  +...+.++++.....                  ..++ =..+..+|+.+....+. +.+-......+|.
T Consensus        86 ~~~~~~~~~--~~~~rL~~L~~~~~~------------------~~p~-r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~  144 (336)
T 3lpz_A           86 RQAGQRVDG--ASRGKLLGCLRLFQP------------------GEPV-RKRFVKEMIDWSKKFGDYPAGDPELHHVVGT  144 (336)
T ss_dssp             HHHTCCCCH--HHHHHHHHHHTTSCT------------------TCHH-HHHHHHHHHHHHHHHSSCTTCCHHHHHHHHH
T ss_pred             HHcCCCCCH--HHHHHHHHHHHhCCC------------------CCcH-HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Confidence            665  3332  344445555444332                  1222 24577778887776543 4566778889999


Q ss_pred             HHHHhcCHHHHHHHHHH-------H----H-HHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHH-------
Q 024043          161 YAAELEQYHKSIEIYEE-------I----A-RQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQD-------  221 (273)
Q Consensus       161 ~~~~~g~y~~A~~~~~~-------~----~-~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~-------  221 (273)
                      ++.+-++|.+|..+|-.       .    + .-.....  ....--...++++.+|+.++...|..+++.|..       
T Consensus       145 ~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~--~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p  222 (336)
T 3lpz_A          145 LYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDE--SHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNK  222 (336)
T ss_dssp             HHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSC--GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCC
Confidence            99999999999877621       1    1 1111111  112233455778899999999999998877662       


Q ss_pred             ----------------------------HHHHHhhcCHhHHHHHHHhhhccCCCch-hHHHHHHHHHHhccc
Q 024043          222 ----------------------------IAASMDEEDIAKFTDVVKEFDSMTPLDP-WKTTLLLRVKEKLKA  264 (273)
Q Consensus       222 ----------------------------ll~a~~~~d~~~~~~~~~~~~~~~~ld~-~~~~~l~~~~~~~~~  264 (273)
                                                  |+.+++.++.+.|+..+..|.....-|| -..+.|.+|.+.+.+
T Consensus       223 ~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q~~~~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFg  294 (336)
T 3lpz_A          223 GLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGSPDLFRQLKSKYEANLNELNGIWDTALELIAEMYFG  294 (336)
T ss_dssp             TSCCEESCC--CCCEECTTCHHHHHHHHHHHHHHSCCHHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHC
T ss_pred             CccccccccCCcccccCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcC
Confidence                                        4557788889999999999998777777 336699999986654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.57  E-value=3.2e-08  Score=76.17  Aligned_cols=89  Identities=16%  Similarity=0.082  Sum_probs=70.8

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-C----------HHHHHHHHHHHHHHHHhcCChhHHH
Q 024043           44 KLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-S----------SNEAISCLEQAVNMFCDIGRLSMAA  112 (273)
Q Consensus        44 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~----------~~eA~~~~~~Al~~~~~~g~~~~~a  112 (273)
                      .+.+.|++|+.+|.+++++...      -+.++.+.|.++... +          +++|+.+|++|+.+-...      +
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~------~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~------~   80 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPL------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK------D   80 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC------H
T ss_pred             HHHhHHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc------H
Confidence            3456788999999998888532      346788888888766 3          569999999999987654      4


Q ss_pred             HHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHHHhc
Q 024043          113 RYYKEIAELYESEH-----------NIEQTIVFFEKAADMFQN  144 (273)
Q Consensus       113 ~~l~~lg~~~~~~g-----------~~~~A~~~y~~Al~~~~~  144 (273)
                      .++.++|.+|..+|           ++++|+.+|++|+++-..
T Consensus        81 ~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~  123 (158)
T 1zu2_A           81 EAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD  123 (158)
T ss_dssp             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence            58999999998874           899999999999999654

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.56  E-value=2.4e-07  Score=78.16  Aligned_cols=194  Identities=13%  Similarity=0.045  Sum_probs=129.6

Q ss_pred             CCCHHHHHHHHHHHH---------------------HHHHHcCCHHHHHHHHHHHHHHHHH--------cCCH-------
Q 024043           26 GSKYEDAADLFDKAA---------------------NSFKLAKSWDKAGATYVKLANCHLK--------LESK-------   69 (273)
Q Consensus        26 ~~~~~~A~~~~~~a~---------------------~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~-------   69 (273)
                      .+|+..|.++|.++.                     .++...+++.+++..+.+++.+...        .|-+       
T Consensus        19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v   98 (282)
T 4f3v_A           19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPV   98 (282)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEEC
T ss_pred             CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccccc
Confidence            578889999888863                     2333444455555555555553221        1100       


Q ss_pred             HHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCc
Q 024043           70 HEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT  148 (273)
Q Consensus        70 ~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~  148 (273)
                      ...-......+.++... +|++|.+.|...+.     +.+...  ....+|.++...+++++|+.++++++..-    ++
T Consensus        99 ~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~-----~~p~~~--~~~~~a~l~~~~~r~~dA~~~l~~a~~~~----d~  167 (282)
T 4f3v_A           99 TSPLAITMGFAACEAAQGNYADAMEALEAAPV-----AGSEHL--VAWMKAVVYGAAERWTDVIDQVKSAGKWP----DK  167 (282)
T ss_dssp             SSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC-----TTCHHH--HHHHHHHHHHHTTCHHHHHHHHTTGGGCS----CH
T ss_pred             CCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----cCCchH--HHHHHHHHHHHcCCHHHHHHHHHHhhccC----Cc
Confidence            00112223335555444 89999998887654     344444  77888999999999999999998654321    22


Q ss_pred             ccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh
Q 024043          149 TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDIAASMDE  228 (273)
Q Consensus       149 ~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~a~~~  228 (273)
                      .....++..+|.++..+|++++|+..|++++... .++   .......++.|+|+..+|+.++|+..|++...     ..
T Consensus       168 ~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~-~~P---~~~~da~~~~glaL~~lGr~deA~~~l~~a~a-----~~  238 (282)
T 4f3v_A          168 FLAGAAGVAHGVAAANLALFTEAERRLTEANDSP-AGE---ACARAIAWYLAMARRSQGNESAAVALLEWLQT-----TH  238 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST-TTT---TTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----HS
T ss_pred             ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC-CCc---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cC
Confidence            2335689999999999999999999999996211 001   11345678899999999999999999998522     23


Q ss_pred             cCHhHHHHHHHh
Q 024043          229 EDIAKFTDVVKE  240 (273)
Q Consensus       229 ~d~~~~~~~~~~  240 (273)
                      .+ .....++..
T Consensus       239 P~-~~~~~aL~~  249 (282)
T 4f3v_A          239 PE-PKVAAALKD  249 (282)
T ss_dssp             CC-HHHHHHHHC
T ss_pred             Cc-HHHHHHHhC
Confidence            44 777777765

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.50  E-value=1.4e-07  Score=72.57  Aligned_cols=87  Identities=8%  Similarity=0.036  Sum_probs=72.6

Q ss_pred             CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHHHhccCCcccHHHHHH
Q 024043           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNI----------EQTIVFFEKAADMFQNEEVTTSANQCKQ  156 (273)
Q Consensus        87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~----------~~A~~~y~~Al~~~~~~~~~~~~~~~~~  156 (273)
                      .+++|+.++++++++....      +.++.++|.++..++++          ++|+..|++|+++...      ...++.
T Consensus        17 ~feeA~~~~~~Ai~l~P~~------aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~------~~~A~~   84 (158)
T 1zu2_A           17 LFEQIRQDAENTYKSNPLD------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK------KDEAVW   84 (158)
T ss_dssp             HHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC------cHHHHH
Confidence            6889999999999887654      45899999999988764          5999999999998643      247899


Q ss_pred             HHHHHHHHhc-----------CHHHHHHHHHHHHHHHhcc
Q 024043          157 KVAQYAAELE-----------QYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       157 ~~a~~~~~~g-----------~y~~A~~~~~~~~~~~~~~  185 (273)
                      ++|.+|..+|           ++++|+++|++++...+++
T Consensus        85 ~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~  124 (158)
T 1zu2_A           85 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN  124 (158)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence            9999999875           8999999999999877665

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.50  E-value=2.8e-07  Score=66.36  Aligned_cols=82  Identities=9%  Similarity=0.009  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHH
Q 024043           90 EAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYH  169 (273)
Q Consensus        90 eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~  169 (273)
                      +|+++|++++......      +.++.++|.++...|++++|+.+|++|+.+....      ..++..+|.++..+|+++
T Consensus         3 ~a~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~   70 (115)
T 2kat_A            3 AITERLEAMLAQGTDN------MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY------SVAWKWLGKTLQGQGDRA   70 (115)
T ss_dssp             CHHHHHHHHHTTTCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHhCCCc------HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHcCCHH
Confidence            5778888887754322      4689999999999999999999999999885422      457899999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 024043          170 KSIEIYEEIARQSL  183 (273)
Q Consensus       170 ~A~~~~~~~~~~~~  183 (273)
                      +|+..|++++...+
T Consensus        71 ~A~~~~~~al~~~~   84 (115)
T 2kat_A           71 GARQAWESGLAAAQ   84 (115)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999975544

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.49  E-value=5.4e-07  Score=61.45  Aligned_cols=85  Identities=19%  Similarity=0.337  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCc
Q 024043           70 HEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT  148 (273)
Q Consensus        70 ~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~  148 (273)
                      ...+..+..+|.++... ++++|+.+|++++.+....      ..++.++|.++...|++++|+.+|++++++....   
T Consensus         6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---   76 (91)
T 1na3_A            6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---   76 (91)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---
Confidence            34567788889988777 9999999999999875332      4688999999999999999999999999885422   


Q ss_pred             ccHHHHHHHHHHHHHHhc
Q 024043          149 TSANQCKQKVAQYAAELE  166 (273)
Q Consensus       149 ~~~~~~~~~~a~~~~~~g  166 (273)
                         ..++..+|.++..+|
T Consensus        77 ---~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           77 ---AEAKQNLGNAKQKQG   91 (91)
T ss_dssp             ---HHHHHHHHHHHHHHC
T ss_pred             ---HHHHHHHHHHHHhcC
Confidence               356788888887654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.46  E-value=1.1e-06  Score=61.95  Aligned_cols=65  Identities=18%  Similarity=0.227  Sum_probs=32.6

Q ss_pred             HHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 024043           75 AYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE  145 (273)
Q Consensus        75 ~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~  145 (273)
                      ++..+|.+|... ++++|+.+|++++.+.....      .++..+|.+|...|++++|+.+|++|+++.+..
T Consensus         9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~   74 (100)
T 3ma5_A            9 TRYALAQEHLKHDNASRALALFEELVETDPDYV------GTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE   74 (100)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence            344455555444 55555555555555433222      245555555555555555555555555554443

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=98.39  E-value=0.00026  Score=60.31  Aligned_cols=229  Identities=9%  Similarity=0.047  Sum_probs=159.2

Q ss_pred             hHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Q 024043            7 RAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT   86 (273)
Q Consensus         7 ~a~~l~~~Aek~~k~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~   86 (273)
                      .-++.+++-+.++.     .|+|=+|-+.|.-..+-|...++|++|++.....+..+-+.|....++..-.-+..+|.+.
T Consensus        12 ~~~r~l~rl~~~I~-----~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~   86 (312)
T 2wpv_A           12 KLAKTLQRFENKIK-----AGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLA   86 (312)
T ss_dssp             CHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhh-----ccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHc
Confidence            34455555555554     3699999999999999999999999999999999999888888877777777777777665


Q ss_pred             --CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC-cccHHHHHHHHHHHHH
Q 024043           87 --SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV-TTSANQCKQKVAQYAA  163 (273)
Q Consensus        87 --~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~-~~~~~~~~~~~a~~~~  163 (273)
                        .++  .+...+.++++.....                  ..+ .=..+..+|+.+....+. +.+....+..+|..+.
T Consensus        87 ~~~~~--~~~~~rl~~l~~~~p~------------------~~~-~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~  145 (312)
T 2wpv_A           87 EVKVD--DISVARLVRLIAELDP------------------SEP-NLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLL  145 (312)
T ss_dssp             TCCCS--HHHHHHHHHHHTTCCT------------------TCT-THHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHH
T ss_pred             CCCCC--HHHHHHHHHHHHHCCC------------------CCc-hHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHh
Confidence              222  2233344444433221                  111 125677788888877654 5666788899999999


Q ss_pred             HhcCHHHHHHHHHHH--------H----HHHhccc-hhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH----------
Q 024043          164 ELEQYHKSIEIYEEI--------A----RQSLNNN-LLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ----------  220 (273)
Q Consensus       164 ~~g~y~~A~~~~~~~--------~----~~~~~~~-~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~----------  220 (273)
                      +-|++.+|..+|-..        +    .-....+ ..+....-...++++.+|+.|+...|...++.|.          
T Consensus       146 ~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~~~~  225 (312)
T 2wpv_A          146 EGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLERFIEKFHPK  225 (312)
T ss_dssp             HTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             hcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcccc
Confidence            999999999877311        1    1111100 0011122334577888999999999999888764          


Q ss_pred             ------------------------HHHHHHhhcCHhHHHHHHHhhhccCCCchhHHHHHHHHHHhccc
Q 024043          221 ------------------------DIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKA  264 (273)
Q Consensus       221 ------------------------~ll~a~~~~d~~~~~~~~~~~~~~~~ld~~~~~~l~~~~~~~~~  264 (273)
                                              =|+.+++.++.+-|+..+..|.....  .| .+.|.+|.+..-+
T Consensus       226 ~~~~~~~~~~~~~~p~~pllnF~~lLl~t~e~~~~~lF~~L~~~Y~~~L~--~~-~~~L~~Ig~~yFg  290 (312)
T 2wpv_A          226 YEKIDKNGYEIVFFEDYSDLNFLQLLLITCQTKDKSYFLNLKNHYLDFSQ--AY-KSELEFLGQEYFN  290 (312)
T ss_dssp             EEEEEETTEEEEEESSCHHHHHHHHHHHHHHHTCHHHHHHHHHHCHHHHH--HT-HHHHHHHHHHHHC
T ss_pred             cccccccccCCCCCCCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--HH-HHHHHHHHHHhcC
Confidence                                    14557888889999999999987755  55 5689999887543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.39  E-value=2.3e-06  Score=60.23  Aligned_cols=66  Identities=11%  Similarity=0.106  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 024043          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSL  183 (273)
Q Consensus       112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~  183 (273)
                      +.++..+|.++...|++++|+.+|++|+++....      ..++..+|.++..+|++++|++.|++++....
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~   72 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPDY------VGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR   72 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence            4678999999999999999999999999986543      25789999999999999999999999975543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.34  E-value=1e-06  Score=63.42  Aligned_cols=85  Identities=8%  Similarity=0.028  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHH
Q 024043           51 KAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIE  129 (273)
Q Consensus        51 ~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~  129 (273)
                      +|+..|.+++....  .    ....+..+|.+|... ++++|+.+|++++.+....      +.++..+|.++...|+++
T Consensus         3 ~a~~~~~~al~~~p--~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~   70 (115)
T 2kat_A            3 AITERLEAMLAQGT--D----NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY------SVAWKWLGKTLQGQGDRA   70 (115)
T ss_dssp             CHHHHHHHHHTTTC--C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHhCC--C----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHcCCHH
Confidence            46667777765432  1    246788999999877 9999999999999875433      458899999999999999


Q ss_pred             HHHHHHHHHHHHHhccCC
Q 024043          130 QTIVFFEKAADMFQNEEV  147 (273)
Q Consensus       130 ~A~~~y~~Al~~~~~~~~  147 (273)
                      +|+.+|++++++....++
T Consensus        71 ~A~~~~~~al~~~~~~~~   88 (115)
T 2kat_A           71 GARQAWESGLAAAQSRGD   88 (115)
T ss_dssp             HHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhcccccc
Confidence            999999999999887654

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.29  E-value=3.2e-05  Score=66.11  Aligned_cols=203  Identities=9%  Similarity=-0.030  Sum_probs=135.6

Q ss_pred             HHHHHHcC--CHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHHhcCChhHHHHHH
Q 024043           40 ANSFKLAK--SWDKAGATYVKLANCHLKLES-KHEAAQAYVDAAHCYKK-TSSNEAISCLEQAVNMFCDIGRLSMAARYY  115 (273)
Q Consensus        40 ~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~-~~~aa~~~~~~~~~~~~-~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l  115 (273)
                      +.++...+  ++++++.++.+++....+.-. +.....++..+...... .++++++.++.++++...++-      .++
T Consensus        74 ~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny------~aW  147 (306)
T 3dra_A           74 FNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNH------HVW  147 (306)
T ss_dssp             HHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCH------HHH
T ss_pred             HHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCH------HHH
Confidence            45666777  999999999999987544321 11222222211111111 378999999999998776653      489


Q ss_pred             HHHHHHHHhcCCHH--HHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcC------HHHHHHHHHHHHHHHhccch
Q 024043          116 KEIAELYESEHNIE--QTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQ------YHKSIEIYEEIARQSLNNNL  187 (273)
Q Consensus       116 ~~lg~~~~~~g~~~--~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~------y~~A~~~~~~~~~~~~~~~~  187 (273)
                      ..-+.++...|.++  ++++++.++++.....      ..++...+.+...+|+      ++++++++.+++...+++..
T Consensus       148 ~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N------~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~S  221 (306)
T 3dra_A          148 SYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN------NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPS  221 (306)
T ss_dssp             HHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHH
T ss_pred             HHHHHHHHHhcccChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCcc
Confidence            99999999999988  9999999999875432      3678888899888887      99999999999987777631


Q ss_pred             hhhchhhHHHHHHHHHHhcCC-HHHHHHHHHHHH--------------HHHHHHhhcCHhHHHHHHHhhhccCC-CchhH
Q 024043          188 LKYGVKGHLLNAGICQLCKGD-VVAITNALERYQ--------------DIAASMDEEDIAKFTDVVKEFDSMTP-LDPWK  251 (273)
Q Consensus       188 ~~~~~~~~~~~~gl~~l~~gd-~~~A~~~~~~~~--------------~ll~a~~~~d~~~~~~~~~~~~~~~~-ld~~~  251 (273)
                             .++..+-+....|. .......++++.              -+.+.+..  .+.+.+++..|+.+.. +||..
T Consensus       222 -------aW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~--~~~~~~A~~~~~~l~~~~Dpir  292 (306)
T 3dra_A          222 -------TWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQ--QKKYNESRTVYDLLKSKYNPIR  292 (306)
T ss_dssp             -------HHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTTCGGG
T ss_pred             -------HHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc--cCCHHHHHHHHHHHHhccChHH
Confidence                   23333333333333 222333333211              11222221  2356788999999885 99999


Q ss_pred             HHHHHHHHHhcc
Q 024043          252 TTLLLRVKEKLK  263 (273)
Q Consensus       252 ~~~l~~~~~~~~  263 (273)
                      ...+.-.++.|.
T Consensus       293 ~~yW~~~~~~l~  304 (306)
T 3dra_A          293 SNFWDYQISKLT  304 (306)
T ss_dssp             HHHHHHHHHTCC
T ss_pred             HHHHHHHHhhcc
Confidence            998887777653

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.27  E-value=4.8e-05  Score=64.91  Aligned_cols=190  Identities=14%  Similarity=0.110  Sum_probs=120.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHH
Q 024043           37 DKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYY  115 (273)
Q Consensus        37 ~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l  115 (273)
                      .-+|.++...|++++|+..+.+.+..    +...+...++..++.++... +++.|.+.+++........  .+..-..+
T Consensus       104 ~~la~i~~~~g~~eeAL~~l~~~i~~----~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~--~~~~d~~l  177 (310)
T 3mv2_B          104 YLLATAQAILGDLDKSLETCVEGIDN----DEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDT--VSGDNEMI  177 (310)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHTS----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHH--HHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhcc----CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc--cccchHHH
Confidence            36789999999999999999887432    11124456777788888777 9999999999876543200  01112244


Q ss_pred             HHHHHHH--HhcC--CHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc--cc-hh
Q 024043          116 KEIAELY--ESEH--NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN--NN-LL  188 (273)
Q Consensus       116 ~~lg~~~--~~~g--~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~--~~-~~  188 (273)
                      ..+++.+  ...|  ++.+|...|++..+-+..    ......+.+   ++..+|++++|.+.++.+....++  +. ..
T Consensus       178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~----~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~  250 (310)
T 3mv2_B          178 LNLAESYIKFATNKETATSNFYYYEELSQTFPT----WKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENA  250 (310)
T ss_dssp             HHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS----HHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHH
T ss_pred             HHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC----cccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccC
Confidence            5555443  3234  899999999997665532    111233333   899999999999999976543321  00 00


Q ss_pred             hhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH------HHHHHHhhcCHhHHHHHHHhhh
Q 024043          189 KYGVKGHLLNAGICQLCKGDVVAITNALERYQ------DIAASMDEEDIAKFTDVVKEFD  242 (273)
Q Consensus       189 ~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~------~ll~a~~~~d~~~~~~~~~~~~  242 (273)
                      .......+.+++.+....|+  .|.+.+++..      .++..+... ...|.+++.+|.
T Consensus       251 ~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~~k-~~~Fd~~~~ky~  307 (310)
T 3mv2_B          251 VLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQEI-DAKFDELVRKYD  307 (310)
T ss_dssp             HSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHHHH-HHHHHHHHHTCC
T ss_pred             CCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHHHH-HHHHHHHHHHhc
Confidence            01234566677777777887  6777777755      233333222 456777777774

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.24  E-value=1.2e-05  Score=57.19  Aligned_cols=73  Identities=11%  Similarity=0.126  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC-cccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV-TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       113 ~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~-~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                      .-...+|..+...|+|.+|+.+|++|+........ ......++..+|.++.++|++++|+.++++++...+++
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~   79 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH   79 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence            34568899999999999999999999999876532 24556899999999999999999999999998766655

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.10  E-value=0.00024  Score=61.27  Aligned_cols=188  Identities=8%  Similarity=0.031  Sum_probs=121.0

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc
Q 024043           49 WDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT---SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE  125 (273)
Q Consensus        49 ~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~---~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~  125 (273)
                      +++++.++..++....+  +    ..++..-+.+....   ++++++.++.+++++..++-      .+|..-+.++...
T Consensus        90 l~~EL~~~~~~L~~~PK--n----y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy------~AW~~R~~vl~~l  157 (331)
T 3dss_A           90 VKAELGFLESCLRVNPK--S----YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNF------HCWDYRRFVAAQA  157 (331)
T ss_dssp             HHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHh
Confidence            56777777777765432  2    13344445555444   48999999999999876654      4888889999998


Q ss_pred             CC-HHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHh--------------cCHHHHHHHHHHHHHHHhccchhhh
Q 024043          126 HN-IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL--------------EQYHKSIEIYEEIARQSLNNNLLKY  190 (273)
Q Consensus       126 g~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~--------------g~y~~A~~~~~~~~~~~~~~~~~~~  190 (273)
                      |. ++++++++.++++.....      ..++...+.++..+              +.++++++++.+++...+++..   
T Consensus       158 ~~~~~eel~~~~~~I~~~p~N------~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~S---  228 (331)
T 3dss_A          158 AVAPAEELAFTDSLITRNFSN------YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS---  228 (331)
T ss_dssp             TCCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHH---
T ss_pred             CcCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHH---
Confidence            88 699999999999875433      35688888887776              5699999999999988887732   


Q ss_pred             chhhHHHHHHHHHHhcC----------CHHHHHHHHHHHH--------------HHHHHHhhcCHhHHHHHHHhhhccCC
Q 024043          191 GVKGHLLNAGICQLCKG----------DVVAITNALERYQ--------------DIAASMDEEDIAKFTDVVKEFDSMTP  246 (273)
Q Consensus       191 ~~~~~~~~~gl~~l~~g----------d~~~A~~~~~~~~--------------~ll~a~~~~d~~~~~~~~~~~~~~~~  246 (273)
                         ..++.-|++....|          -+.++.+++++..              -+...++.  ...-.+...-+++++.
T Consensus       229 ---aW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~--~~~~~~~~~~l~~l~~  303 (331)
T 3dss_A          229 ---AWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDP--LLYEKETLQYFSTLKA  303 (331)
T ss_dssp             ---HHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCT--TTTHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcc--cccHHHHHHHHHHHHH
Confidence               12233444444433          1334444444432              11112211  1223355566777788


Q ss_pred             CchhHHHHHHHHHHhc
Q 024043          247 LDPWKTTLLLRVKEKL  262 (273)
Q Consensus       247 ld~~~~~~l~~~~~~~  262 (273)
                      |||...--...+...+
T Consensus       304 ~Dp~r~~~y~d~~~~~  319 (331)
T 3dss_A          304 VDPMRAAYLDDLRSKF  319 (331)
T ss_dssp             HCGGGHHHHHHHHHHH
T ss_pred             hCcchhhHHHHHHHHH
Confidence            8888776666655443

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.06  E-value=0.0021  Score=57.66  Aligned_cols=107  Identities=12%  Similarity=0.109  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhh
Q 024043          111 AARYYKEIAELYESEHNIEQTIVFFEKAA-DMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLK  189 (273)
Q Consensus       111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al-~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~  189 (273)
                      .++....++.+|+..|++.+|......-. +.+. ..+...-..++.....++...++|.+|...+.++.......+...
T Consensus       136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~-~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~  214 (445)
T 4b4t_P          136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYG-SMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYE  214 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS-SSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcH
Confidence            57788999999999999999999998754 3333 223344467788888899999999999999999853332221111


Q ss_pred             hchhhHHHHHHHHHHhcCCHHHHHHHHHH
Q 024043          190 YGVKGHLLNAGICQLCKGDVVAITNALER  218 (273)
Q Consensus       190 ~~~~~~~~~~gl~~l~~gd~~~A~~~~~~  218 (273)
                      .-...++...|..+...+|+..|.++|-+
T Consensus       215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e  243 (445)
T 4b4t_P          215 SLKLEYYNLLVKISLHKREYLEVAQYLQE  243 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            11223445567788888888777655443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.01  E-value=7.2e-05  Score=65.17  Aligned_cols=146  Identities=10%  Similarity=0.024  Sum_probs=100.4

Q ss_pred             CCHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-----CHHHHHHHHHHHH
Q 024043           27 SKYEDAADLFDKAANSFKL--AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-----SSNEAISCLEQAV   99 (273)
Q Consensus        27 ~~~~~A~~~~~~a~~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-----~~~eA~~~~~~Al   99 (273)
                      |.-.+|.++|-++-..+..  ...+.+|+.+|++|+++-...      +.++..++.+|...     .....+.-..+++
T Consensus       191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~------a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~  264 (372)
T 3ly7_A          191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEF------TYARAEKALVDIVRHSQHPLDEKQLAALNTEI  264 (372)
T ss_dssp             CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Confidence            4556899999987554443  334689999999999885332      22333344444211     1123334444555


Q ss_pred             HHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043          100 NMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA  179 (273)
Q Consensus       100 ~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~  179 (273)
                      ............+.++.-++..+...|++++|+..+++|+++-     + + ...+..+|.++.-.|++++|++.|++++
T Consensus       265 ~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-----~-s-~~a~~llG~~~~~~G~~~eA~e~~~~Al  337 (372)
T 3ly7_A          265 DNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE-----M-S-WLNYVLLGKVYEMKGMNREAADAYLTAF  337 (372)
T ss_dssp             HHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----C-C-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-----C-C-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            4333444445567788888888877799999999999999994     1 2 3567889999999999999999999998


Q ss_pred             HHHhcc
Q 024043          180 RQSLNN  185 (273)
Q Consensus       180 ~~~~~~  185 (273)
                      ...+..
T Consensus       338 rL~P~~  343 (372)
T 3ly7_A          338 NLRPGA  343 (372)
T ss_dssp             HHSCSH
T ss_pred             hcCCCc
Confidence            765554

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.95  E-value=1.1e-05  Score=55.94  Aligned_cols=87  Identities=9%  Similarity=0.123  Sum_probs=55.8

Q ss_pred             HHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHH
Q 024043           78 DAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAAR-YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCK  155 (273)
Q Consensus        78 ~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~-~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~  155 (273)
                      +.|.++... ++++|+.+|++++......      .. ++..+|.++...|++++|+.+|++|+++.....      .++
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~   72 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEFLQTEPVG------KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP------ALQ   72 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSST------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST------HHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH------HHH
Confidence            345555444 7888888888877763221      23 777888888888888888888888887754332      111


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 024043          156 QKVAQYAAELEQYHKSIEIYEEIARQSLN  184 (273)
Q Consensus       156 ~~~a~~~~~~g~y~~A~~~~~~~~~~~~~  184 (273)
                      .+        +.+.+++..|++++...++
T Consensus        73 ~~--------~~~~~a~~~~~~~~~~~p~   93 (99)
T 2kc7_A           73 AR--------KMVMDILNFYNKDMYNQLE   93 (99)
T ss_dssp             HH--------HHHHHHHHHHCCTTHHHHC
T ss_pred             HH--------HHHHHHHHHHHHHhccCcc
Confidence            11        5667777777776554444

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.92  E-value=0.00063  Score=52.14  Aligned_cols=102  Identities=11%  Similarity=-0.003  Sum_probs=78.9

Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC------
Q 024043           77 VDAAHCYKKTSSNEAISCLEQAVNMFCDIGR---LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV------  147 (273)
Q Consensus        77 ~~~~~~~~~~~~~eA~~~~~~Al~~~~~~g~---~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~------  147 (273)
                      .++-.++....|+.|+-....++.+.....+   +...+.++..+|..+...++|.+|...|++|+.+.+....      
T Consensus        25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~  104 (167)
T 3ffl_A           25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP  104 (167)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence            3444444555888888888888887765444   6788889999999999999999999999999888774321      


Q ss_pred             -------------cccHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 024043          148 -------------TTSANQCKQKVAQYAAELEQYHKSIEIYEEI  178 (273)
Q Consensus       148 -------------~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~  178 (273)
                                   .....++..+++.|+.+++++.+|+..++.+
T Consensus       105 ~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A          105 STGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             ------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             cccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence                         1223478899999999999999999998765

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.87  E-value=5.6e-05  Score=52.26  Aligned_cols=64  Identities=9%  Similarity=0.105  Sum_probs=54.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          116 KEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ-CKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       116 ~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~-~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                      .+.|.++...|++++|+.+|++++++....      .. ++..+|.++..+|++++|++.|++++...+++
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   68 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVG------KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS   68 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSST------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence            456888888899999999999999985422      35 89999999999999999999999998765554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.86  E-value=0.00017  Score=66.85  Aligned_cols=139  Identities=6%  Similarity=-0.023  Sum_probs=105.8

Q ss_pred             HHHHHHHHHH--------------HHHHHHcCC----------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 024043           30 EDAADLFDKA--------------ANSFKLAKS----------WDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK   85 (273)
Q Consensus        30 ~~A~~~~~~a--------------~~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~   85 (273)
                      ++|.+++.++              +.++...++          +++++.++.+++....+  +    ..++..-+.+...
T Consensus        46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK--~----y~aW~hR~w~l~~  119 (567)
T 1dce_A           46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK--S----YGTWHHRCWLLSR  119 (567)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHH
Confidence            4566666665              345556666          99999999999876533  2    2345555666655


Q ss_pred             c---CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHH
Q 024043           86 T---SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH-NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQY  161 (273)
Q Consensus        86 ~---~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g-~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~  161 (273)
                      .   +++++++++.+++++..++      ..+|...+.++...| .++++++++.++++.....      ..+|...+.+
T Consensus       120 l~~~~~~~el~~~~k~l~~d~~N------~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n------~saW~~r~~l  187 (567)
T 1dce_A          120 LPEPNWARELELCARFLEADERN------FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN------YSSWHYRSCL  187 (567)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC------HHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHhhcccc------ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCC------ccHHHHHHHH
Confidence            5   5699999999999987655      358999999999998 8999999999998875332      3568888888


Q ss_pred             HHHh--------------cCHHHHHHHHHHHHHHHhccc
Q 024043          162 AAEL--------------EQYHKSIEIYEEIARQSLNNN  186 (273)
Q Consensus       162 ~~~~--------------g~y~~A~~~~~~~~~~~~~~~  186 (273)
                      +..+              +.+++|++++.+++...+++.
T Consensus       188 l~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~  226 (567)
T 1dce_A          188 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQ  226 (567)
T ss_dssp             HHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred             HHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCc
Confidence            8775              678999999999998777663

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.82  E-value=0.00012  Score=51.81  Aligned_cols=71  Identities=6%  Similarity=0.016  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043           74 QAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR-LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (273)
Q Consensus        74 ~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~-~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~  144 (273)
                      ..+..+|..+... +|..|+..|++|+........ ....+.++..+|.++..+|+++.|+.++++|+.+-+.
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~   78 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE   78 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence            3455788888666 999999999999998865432 2345688999999999999999999999999988543

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.72  E-value=0.00012  Score=66.26  Aligned_cols=161  Identities=14%  Similarity=0.154  Sum_probs=114.0

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-CCcccHHHHHHHHHHHHHHhcCHHHHHH
Q 024043           95 LEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-EVTTSANQCKQKVAQYAAELEQYHKSIE  173 (273)
Q Consensus        95 ~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~-~~~~~~~~~~~~~a~~~~~~g~y~~A~~  173 (273)
                      +..++....-..|..+.|..++-+=..|...+.|++|..+..++.  |... .+.......+.-+|.++.-.++|.+|.+
T Consensus       214 Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~  291 (523)
T 4b4t_S          214 MMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANE  291 (523)
T ss_dssp             HHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            334444444456788999999999999999999999999999885  5443 2333446677889999999999999999


Q ss_pred             HHHHHHHHHhccchhhhchh-hHHHHHHHHHHhcCCHHHH--------HHHHHHHHHHHHHHhhcCHhHHHHHHHhhhcc
Q 024043          174 IYEEIARQSLNNNLLKYGVK-GHLLNAGICQLCKGDVVAI--------TNALERYQDIAASMDEEDIAKFTDVVKEFDSM  244 (273)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~-~~~~~~gl~~l~~gd~~~A--------~~~~~~~~~ll~a~~~~d~~~~~~~~~~~~~~  244 (273)
                      ++..+...++.+.. ..+.. .++-.+..|.+..|++..-        ++.+..|..|..++..||++.|...+..+...
T Consensus       292 ~L~~A~rkap~~~~-a~gfr~~a~K~lI~V~LLlG~iP~r~lf~q~~l~~~L~pY~~Lv~Avr~GdL~~F~~~L~~h~~~  370 (523)
T 4b4t_S          292 YIIAAIRKAPHNSK-SLGFLQQSNKLHCCIQLLMGDIPELSFFHQSNMQKSLLPYYHLTKAVKLGDLKKFTSTITKYKQL  370 (523)
T ss_dssp             HHHHHTSSCSCSSS-CSHHHHHHHHHHHHHHHHHTCCCCHHHHTTTSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred             HHHHHHHhCCcchh-hhhHHHHHHHHHHhHHhhcCCCCChHHhhchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcce
Confidence            99999765554321 11222 2333456677777875431        34567788999999999999999999998765


Q ss_pred             CCCchhHHHHHHHHH
Q 024043          245 TPLDPWKTTLLLRVK  259 (273)
Q Consensus       245 ~~ld~~~~~~l~~~~  259 (273)
                      -.=|.... ++.+++
T Consensus       371 F~~Dgty~-LI~rLr  384 (523)
T 4b4t_S          371 LLKDDTYQ-LCVRLR  384 (523)
T ss_dssp             HHHTTCTH-HHHHHH
T ss_pred             eccCChhH-HHHHHH
Confidence            55454433 444433

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=97.71  E-value=0.00061  Score=59.10  Aligned_cols=140  Identities=9%  Similarity=0.024  Sum_probs=106.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHH
Q 024043           25 FGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT--SSNEAISCLEQAVNMF  102 (273)
Q Consensus        25 ~~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~--~~~eA~~~~~~Al~~~  102 (273)
                      ++++|..+...+..   +....+..++|++++.+++.+..+.      ..+...-+.+....  ++++++.++.+++...
T Consensus        49 y~~~y~~~~~~~r~---~~~~~e~se~AL~lt~~~L~~nP~~------ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n  119 (349)
T 3q7a_A           49 YSEEYKDAMDYFRA---IAAKEEKSERALELTEIIVRMNPAH------YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN  119 (349)
T ss_dssp             CCHHHHHHHHHHHH---HHHTTCCSHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred             eCHHHHHHHHHHHH---HHHhCCCCHHHHHHHHHHHHhCchh------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence            46788877776643   3455566789999999998775322      23455556666555  6999999999999876


Q ss_pred             HhcCChhHHHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHH--------HHH
Q 024043          103 CDIGRLSMAARYYKEIAELYESE-H-NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYH--------KSI  172 (273)
Q Consensus       103 ~~~g~~~~~a~~l~~lg~~~~~~-g-~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~--------~A~  172 (273)
                      .+.-      .++..-+.++... + +++++++++.++++.....      ..++...+.+...+|.++        +++
T Consensus       120 PKny------~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkN------y~AW~~R~wvl~~l~~~~~~~~~~~~eEL  187 (349)
T 3q7a_A          120 LKSY------QVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKN------YHTWAYLHWLYSHFSTLGRISEAQWGSEL  187 (349)
T ss_dssp             CCCH------HHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTC------HHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             CCcH------HHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhccccccchhhHHHHH
Confidence            6553      4888889999887 7 8999999999999764322      467888899998888887        999


Q ss_pred             HHHHHHHHHHhcc
Q 024043          173 EIYEEIARQSLNN  185 (273)
Q Consensus       173 ~~~~~~~~~~~~~  185 (273)
                      +++++.+...+.+
T Consensus       188 e~~~k~I~~dp~N  200 (349)
T 3q7a_A          188 DWCNEMLRVDGRN  200 (349)
T ss_dssp             HHHHHHHHHCTTC
T ss_pred             HHHHHHHHhCCCC
Confidence            9999998766655

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.69  E-value=0.0015  Score=55.62  Aligned_cols=129  Identities=11%  Similarity=0.121  Sum_probs=88.9

Q ss_pred             HHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHH
Q 024043           76 YVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQC  154 (273)
Q Consensus        76 ~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~  154 (273)
                      +.-+|.++... ++++|++.+.+.+.    .|.......+...++.++...|+++.|...+++..+..+..-  ...-.+
T Consensus       103 ~~~la~i~~~~g~~eeAL~~l~~~i~----~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~--~~~d~~  176 (310)
T 3mv2_B          103 LYLLATAQAILGDLDKSLETCVEGID----NDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTV--SGDNEM  176 (310)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHT----SSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHH--HHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhc----cCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccc--ccchHH
Confidence            35788888666 99999999998743    222234566788889999999999999999998776643100  011233


Q ss_pred             HHHHHH--HHHHhc--CHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHH
Q 024043          155 KQKVAQ--YAAELE--QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER  218 (273)
Q Consensus       155 ~~~~a~--~~~~~g--~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~  218 (273)
                      +..++.  +....|  ++.+|..+|++.....+.     +.....+++   +++.+|+++.|...++.
T Consensus       177 l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~-----~~~~~lLln---~~~~~g~~~eAe~~L~~  236 (310)
T 3mv2_B          177 ILNLAESYIKFATNKETATSNFYYYEELSQTFPT-----WKTQLGLLN---LHLQQRNIAEAQGIVEL  236 (310)
T ss_dssp             HHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS-----HHHHHHHHH---HHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC-----cccHHHHHH---HHHHcCCHHHHHHHHHH
Confidence            455543  455556  999999999997543221     111223333   89999999999999875

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.64  E-value=0.0005  Score=63.72  Aligned_cols=123  Identities=8%  Similarity=0.052  Sum_probs=95.4

Q ss_pred             HcCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-C----------HHHHHHHHHHHHHHHHhcCChhHHH
Q 024043           45 LAKS-WDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-S----------SNEAISCLEQAVNMFCDIGRLSMAA  112 (273)
Q Consensus        45 ~~~~-~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~----------~~eA~~~~~~Al~~~~~~g~~~~~a  112 (273)
                      ..|. .++|++++.+++.+..+.      ..++..-+.+.... +          ++++++++.+++....+.      .
T Consensus        40 ~~~~~~eeal~~~~~~l~~nP~~------~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~------y  107 (567)
T 1dce_A           40 QAGELDESVLELTSQILGANPDF------ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS------Y  107 (567)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC------H
T ss_pred             HcCCCCHHHHHHHHHHHHHCchh------HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC------H
Confidence            3444 467799999988774322      23444555555544 4          899999999999877655      3


Q ss_pred             HHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHhcc
Q 024043          113 RYYKEIAELYESEH--NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE-QYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       113 ~~l~~lg~~~~~~g--~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g-~y~~A~~~~~~~~~~~~~~  185 (273)
                      .+|..-+.++...+  +++++++++.+++++....      ..+|...+.+...+| .++++++++.+++...+.+
T Consensus       108 ~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N------~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n  177 (567)
T 1dce_A          108 GTWHHRCWLLSRLPEPNWARELELCARFLEADERN------FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN  177 (567)
T ss_dssp             HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC
T ss_pred             HHHHHHHHHHHHcccccHHHHHHHHHHHHhhcccc------ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCC
Confidence            48999999999999  6799999999999986433      478999999999999 9999999999998655554

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=97.62  E-value=0.0067  Score=51.60  Aligned_cols=140  Identities=9%  Similarity=0.011  Sum_probs=103.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHH
Q 024043           25 FGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK---TSSNEAISCLEQAVNM  101 (273)
Q Consensus        25 ~~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~---~~~~eA~~~~~~Al~~  101 (273)
                      ++++|.++...+..   +.......++|+.++.+++.+....      ..+.+.-+.+...   .++++++.++.+++.+
T Consensus        28 y~~~y~~~~~~~~a---~~~~~e~s~~aL~~t~~~L~~nP~~------~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~   98 (306)
T 3dra_A           28 YDEDYKQIMGLLLA---LMKAEEYSERALHITELGINELASH------YTIWIYRFNILKNLPNRNLYDELDWCEEIALD   98 (306)
T ss_dssp             CCHHHHHHHHHHHH---HHHTTCCSHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred             eCHHHHHHHHHHHH---HHHcCCCCHHHHHHHHHHHHHCcHH------HHHHHHHHHHHHHcccccHHHHHHHHHHHHHH
Confidence            34566666665543   2333444578999999998874321      2344445555533   2899999999999998


Q ss_pred             HHhcCChhHHHHHHHHHHHHH----Hhc---CCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHH--HHH
Q 024043          102 FCDIGRLSMAARYYKEIAELY----ESE---HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYH--KSI  172 (273)
Q Consensus       102 ~~~~g~~~~~a~~l~~lg~~~----~~~---g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~--~A~  172 (273)
                      ..+.-.      ++..-+.++    ...   +++++++.++.++++.....      ..++...+.+...+|.++  +++
T Consensus        99 nPk~y~------aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkn------y~aW~~R~~vl~~l~~~~~~~EL  166 (306)
T 3dra_A           99 NEKNYQ------IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKN------HHVWSYRKWLVDTFDLHNDAKEL  166 (306)
T ss_dssp             CTTCCH------HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCTTCHHHH
T ss_pred             CcccHH------HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcccChHHHH
Confidence            877654      777777777    666   78999999999999876433      478999999999999998  999


Q ss_pred             HHHHHHHHHHhcc
Q 024043          173 EIYEEIARQSLNN  185 (273)
Q Consensus       173 ~~~~~~~~~~~~~  185 (273)
                      +++.+++...+.+
T Consensus       167 ~~~~~~i~~d~~N  179 (306)
T 3dra_A          167 SFVDKVIDTDLKN  179 (306)
T ss_dssp             HHHHHHHHHCTTC
T ss_pred             HHHHHHHHhCCCC
Confidence            9999998766554

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.58  E-value=0.0071  Score=57.20  Aligned_cols=195  Identities=9%  Similarity=-0.046  Sum_probs=123.7

Q ss_pred             HHHHHHcCCHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc------CCh---
Q 024043           40 ANSFKLAKSWDKAG-ATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI------GRL---  108 (273)
Q Consensus        40 ~~~~~~~~~~~~A~-~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~------g~~---  108 (273)
                      +......|+.++|. ..|.+|......  +    ...+...+.+.... ++++|.+.|++++......      +.+   
T Consensus       350 a~~~~~~~~~~~a~r~il~rAi~~~P~--s----~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~  423 (679)
T 4e6h_A          350 ANYQGEKNTDSTVITKYLKLGQQCIPN--S----AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNE  423 (679)
T ss_dssp             HHHHHHHSCCTTHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcch
Confidence            44455667777886 888888754321  1    22344455555444 8999999999999875311      001   


Q ss_pred             -------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Q 024043          109 -------SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE-QYHKSIEIYEEIAR  180 (273)
Q Consensus       109 -------~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g-~y~~A~~~~~~~~~  180 (273)
                             ...+.+|...+......|..+.|...|.+|+......     ...++...|.+-...+ +++.|..+|++++.
T Consensus       424 ~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~-----~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk  498 (679)
T 4e6h_A          424 SAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV-----TPDIYLENAYIEYHISKDTKTACKVLELGLK  498 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS-----CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred             hhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-----ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence                   1245577777777777788999999999998762111     1245667777766665 58999999999987


Q ss_pred             HHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH----------HHHHH-----HhhcCHhHHHHHHHhhhccC
Q 024043          181 QSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ----------DIAAS-----MDEEDIAKFTDVVKEFDSMT  245 (273)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~----------~ll~a-----~~~~d~~~~~~~~~~~~~~~  245 (273)
                      ..+.++       ..+...+......|+..+|+..|++..          .+...     ...|+.+.+..+..+.-...
T Consensus       499 ~~p~~~-------~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~  571 (679)
T 4e6h_A          499 YFATDG-------EYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF  571 (679)
T ss_dssp             HHTTCH-------HHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred             HCCCch-------HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            766542       122233333445688889988888743          12111     24577777777776666666


Q ss_pred             CCchhHH
Q 024043          246 PLDPWKT  252 (273)
Q Consensus       246 ~ld~~~~  252 (273)
                      +-++-+.
T Consensus       572 P~~~~~~  578 (679)
T 4e6h_A          572 PEVNKLE  578 (679)
T ss_dssp             TTCCHHH
T ss_pred             CCCcHHH
Confidence            6554433

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=97.54  E-value=0.036  Score=48.77  Aligned_cols=150  Identities=9%  Similarity=-0.004  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCCh
Q 024043           31 DAADLFDKAANSFKL-AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL  108 (273)
Q Consensus        31 ~A~~~~~~a~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~  108 (273)
                      +++.+-...-..|.. -+..+.-++....+.+....-+..+-.-..=.++|..|... ++.+|.+.+.+...-....++.
T Consensus        56 k~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~  135 (394)
T 3txn_A           56 KAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDK  135 (394)
T ss_dssp             HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCT
T ss_pred             HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccc
Confidence            333433333334433 34566667777777777766555544444555788888777 9999999999999988888888


Q ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-CCcccHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHH
Q 024043          109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-EVTTSANQCKQKVAQYAA-ELEQYHKSIEIYEEIAR  180 (273)
Q Consensus       109 ~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~-~~~~~~~~~~~~~a~~~~-~~g~y~~A~~~~~~~~~  180 (273)
                      ...-.++..-..+|...+++.++...|.+|..+.... .+|...+.....-|.++. ..++|..|..+|-++..
T Consensus       136 ~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~  209 (394)
T 3txn_A          136 NLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE  209 (394)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence            8888888888899999999999999999999887765 555566677777788888 89999999999988853

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=97.39  E-value=0.0029  Score=54.49  Aligned_cols=123  Identities=8%  Similarity=0.046  Sum_probs=87.7

Q ss_pred             HcCCHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-----------CHHHHHHHHHHHHHHHHhcCChhHHH
Q 024043           45 LAKSWD-KAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-----------SSNEAISCLEQAVNMFCDIGRLSMAA  112 (273)
Q Consensus        45 ~~~~~~-~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-----------~~~eA~~~~~~Al~~~~~~g~~~~~a  112 (273)
                      ..|.++ +|+.++.+++.+..+.    -.+..+  -+.+....           .+++++.++..++...+++      .
T Consensus        41 ~~~e~s~eaL~~t~~~L~~nP~~----ytaWn~--Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKn------y  108 (331)
T 3dss_A           41 QAGELDESVLELTSQILGANPDF----ATLWNC--RREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS------Y  108 (331)
T ss_dssp             HTTCCSHHHHHHHHHHHTTCTTC----HHHHHH--HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC------H
T ss_pred             HcCCCCHHHHHHHHHHHHHCchh----HHHHHH--HHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCC------H
Confidence            455554 7788888877664221    122222  22332222           2578888888888766554      3


Q ss_pred             HHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHhcc
Q 024043          113 RYYKEIAELYESEH--NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQ-YHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       113 ~~l~~lg~~~~~~g--~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~-y~~A~~~~~~~~~~~~~~  185 (273)
                      .+|..-+.++...|  .+++++.++.+++++....      ..++...+.+....|. ++++++++.+++...+.+
T Consensus       109 ~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprN------y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N  178 (331)
T 3dss_A          109 GTWHHRCWLLSRLPEPNWARELELCARFLEADERN------FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN  178 (331)
T ss_dssp             HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCC
T ss_pred             HHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCC
Confidence            48888999999988  4899999999999875432      4678889999999998 699999999999776665

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.36  E-value=0.021  Score=53.95  Aligned_cols=179  Identities=8%  Similarity=0.061  Sum_probs=119.8

Q ss_pred             CCHHHHH-HHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHH--------cCC--------HHHHHHH
Q 024043           27 SKYEDAA-DLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLK--------LES--------KHEAAQA   75 (273)
Q Consensus        27 ~~~~~A~-~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~--------~~~aa~~   75 (273)
                      ++.++|. ..|.+|              +.+....|+++.|...|++++.....        .+.        ......+
T Consensus       357 ~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~v  436 (679)
T 4e6h_A          357 NTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYV  436 (679)
T ss_dssp             SCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHH
Confidence            5556665 666665              44566789999999999999987521        111        1123345


Q ss_pred             HHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhccCCcccHHH
Q 024043           76 YVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE-HNIEQTIVFFEKAADMFQNEEVTTSANQ  153 (273)
Q Consensus        76 ~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~-g~~~~A~~~y~~Al~~~~~~~~~~~~~~  153 (273)
                      +...+.+.++. +.+.|...|.+|+......     ...++...+.+-... ++++.|...|+++++.+...      ..
T Consensus       437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~~-----~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~------~~  505 (679)
T 4e6h_A          437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKLV-----TPDIYLENAYIEYHISKDTKTACKVLELGLKYFATD------GE  505 (679)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS-----CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC------HH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-----ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc------hH
Confidence            55666666555 8899999999998752111     124566666665555 45999999999999998643      34


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          154 CKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       154 ~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      .+..++......|+.++|..+|++++...+..    ......+.....--...|+...+....+++.
T Consensus       506 ~w~~y~~fe~~~~~~~~AR~lferal~~~~~~----~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~  568 (679)
T 4e6h_A          506 YINKYLDFLIYVNEESQVKSLFESSIDKISDS----HLLKMIFQKVIFFESKVGSLNSVRTLEKRFF  568 (679)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHTTTSSST----THHHHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            56788888889999999999999997543310    0122223222333345799999888888864

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.28  E-value=0.029  Score=51.07  Aligned_cols=187  Identities=11%  Similarity=0.041  Sum_probs=112.5

Q ss_pred             HhhHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 024043            5 IARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYK   84 (273)
Q Consensus         5 ~~~a~~l~~~Aek~~k~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~   84 (273)
                      .+.++.|.+++.++...   .+|   +  ..+...-..|...|++++|...|.++...--+. +    ..+|+.+..++.
T Consensus         6 ~s~~e~L~~~~~~k~~~---~sp---e--~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~p-d----~~tyn~Li~~c~   72 (501)
T 4g26_A            6 ASPSENLSRKAKKKAIQ---QSP---E--ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQL-S----QYHYNVLLYVCS   72 (501)
T ss_dssp             ---------------------CH---H--HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCC-C----HHHHHHHHHHHT
T ss_pred             cchHHHHHHHHHHhccc---CCC---H--HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-C----HhHHHHHHHHHH
Confidence            45556666665553221   122   2  235556778889999999999999876532111 1    245666666665


Q ss_pred             cc----------CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHH
Q 024043           85 KT----------SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQC  154 (273)
Q Consensus        85 ~~----------~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~  154 (273)
                      ..          +.++|.+.|++-.    ..|-.. -..+++.+-..|...|++++|.+.+++-..    .|-... ..+
T Consensus        73 ~~~~~~~~~~~~~l~~A~~lf~~M~----~~G~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~----~g~~Pd-~~t  142 (501)
T 4g26_A           73 LAEAATESSPNPGLSRGFDIFKQMI----VDKVVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKA----FGIQPR-LRS  142 (501)
T ss_dssp             TCCCCSSSSCCHHHHHHHHHHHHHH----HTTCCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----TTCCCC-HHH
T ss_pred             hCCchhhhhhcchHHHHHHHHHHHH----HhCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCc-cce
Confidence            43          2455666665432    223211 134677888888888999999999987543    232223 356


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          155 KQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       155 ~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      +..+-..+.+.|+.++|.++|++.....+.  .   . ...+..+..++...|+.++|.+.+++..
T Consensus       143 yn~lI~~~~~~g~~~~A~~l~~~M~~~G~~--P---d-~~ty~~Li~~~~~~g~~d~A~~ll~~Mr  202 (501)
T 4g26_A          143 YGPALFGFCRKGDADKAYEVDAHMVESEVV--P---E-EPELAALLKVSMDTKNADKVYKTLQRLR  202 (501)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTCC--C---C-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ehHHHHHHHHCCCHHHHHHHHHHHHhcCCC--C---C-HHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence            888888999999999999999988543221  1   1 1234555667888999999999998864

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.27  E-value=0.0066  Score=46.46  Aligned_cols=99  Identities=8%  Similarity=-0.057  Sum_probs=74.1

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHHhccCC---cccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh---ccch------
Q 024043          120 ELYESEHNIEQTIVFFEKAADMFQNEEV---TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSL---NNNL------  187 (273)
Q Consensus       120 ~~~~~~g~~~~A~~~y~~Al~~~~~~~~---~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~---~~~~------  187 (273)
                      .-+...|.|+.|+-.+..++.+.....+   +....+++..+|+.++..|+|.+|...|++++...-   ..+.      
T Consensus        28 k~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~  107 (167)
T 3ffl_A           28 RDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTG  107 (167)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----------
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccccc
Confidence            3334449999999999999999875543   567789999999999999999999999999863211   0000      


Q ss_pred             ---------hhhchhhHHHHHHHHHHhcCCHHHHHHHHHH
Q 024043          188 ---------LKYGVKGHLLNAGICQLCKGDVVAITNALER  218 (273)
Q Consensus       188 ---------~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~  218 (273)
                               ...+..+.-+++..||...++...|...++.
T Consensus       108 ~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~  147 (167)
T 3ffl_A          108 NSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG  147 (167)
T ss_dssp             ---------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence                     0122336778899999999999888777654

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.17  E-value=0.0039  Score=47.21  Aligned_cols=72  Identities=17%  Similarity=0.121  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccc
Q 024043          111 AARYYKEIAELYESEH---NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNN  186 (273)
Q Consensus       111 ~a~~l~~lg~~~~~~g---~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~  186 (273)
                      ...+..+.|.++....   +.++++.++++.++.-    .|....+|+..+|..+.++|+|++|.+++++++...+++.
T Consensus        31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~----~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~  105 (152)
T 1pc2_A           31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN  105 (152)
T ss_dssp             CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence            3467888899998887   5669999999877742    2334568999999999999999999999999998888764

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.04  E-value=0.014  Score=50.80  Aligned_cols=150  Identities=13%  Similarity=-0.033  Sum_probs=91.9

Q ss_pred             CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHH
Q 024043           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE----HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYA  162 (273)
Q Consensus        87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~----g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~  162 (273)
                      +..+|+.+|++|+++-+....      ++..++.+|...    +.......-..+++............+.++..++.++
T Consensus       214 ~~~~A~~l~e~Al~lDP~~a~------A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~  287 (372)
T 3ly7_A          214 SLNRASELLGEIVQSSPEFTY------ARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSA  287 (372)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHH
Confidence            568999999999988665432      344444444321    1122233334444443333222233456788888888


Q ss_pred             HHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCHhH--HHHHHHh
Q 024043          163 AELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDIAASMDEEDIAK--FTDVVKE  240 (273)
Q Consensus       163 ~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~a~~~~d~~~--~~~~~~~  240 (273)
                      ...|++++|+..+++++...+       + ...+..+|.++...|++++|.+.+++...+     +...+.  +-+-+.=
T Consensus       288 l~~gd~d~A~~~l~rAl~Ln~-------s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL-----~P~~~t~~~~~~l~F  354 (372)
T 3ly7_A          288 LVKGKTDESYQAINTGIDLEM-------S-WLNYVLLGKVYEMKGMNREAADAYLTAFNL-----RPGANTLYWIENGIF  354 (372)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCC-------C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----SCSHHHHHHHHHSSS
T ss_pred             HhCCCHHHHHHHHHHHHhcCC-------C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCcChHHHHhCcee
Confidence            888999999999999986532       1 124456788999999999999999886422     111111  1122222


Q ss_pred             hhccCCCchhHHHHH
Q 024043          241 FDSMTPLDPWKTTLL  255 (273)
Q Consensus       241 ~~~~~~ld~~~~~~l  255 (273)
                      |.+++++||.+..++
T Consensus       355 ~sn~~~i~~~~~~~~  369 (372)
T 3ly7_A          355 QTSVPYVVPYLDKFL  369 (372)
T ss_dssp             CCCHHHHCHHHHHHH
T ss_pred             ecchhhhHHHHHhcc
Confidence            566777777776654

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=97.01  E-value=0.0043  Score=53.78  Aligned_cols=161  Identities=11%  Similarity=-0.053  Sum_probs=106.8

Q ss_pred             HHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhccCCcccHHHHHHHHH
Q 024043           82 CYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH-NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVA  159 (273)
Q Consensus        82 ~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g-~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a  159 (273)
                      +.... ..++|++++.+++.+..+.-      .+++.-+.++..+| .+++++.++.+++....+.      ..++...+
T Consensus        63 ~~~~~e~se~AL~lt~~~L~~nP~~y------taWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn------y~aW~hR~  130 (349)
T 3q7a_A           63 IAAKEEKSERALELTEIIVRMNPAHY------TVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS------YQVWHHRL  130 (349)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC------HHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHhCchhH------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc------HHHHHHHH
Confidence            33334 66789999999998876653      48888899999998 5999999999999776533      46788889


Q ss_pred             HHHHHh-c-CHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHH--------HHHHHHHHHH---------
Q 024043          160 QYAAEL-E-QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVV--------AITNALERYQ---------  220 (273)
Q Consensus       160 ~~~~~~-g-~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~--------~A~~~~~~~~---------  220 (273)
                      .++..+ + +++++++++.+++...+.+.       .++..-+-+....|...        ++.+.+++..         
T Consensus       131 wlL~~l~~~~~~~EL~~~~k~L~~dpkNy-------~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SA  203 (349)
T 3q7a_A          131 LLLDRISPQDPVSEIEYIHGSLLPDPKNY-------HTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSA  203 (349)
T ss_dssp             HHHHHHCCSCCHHHHHHHHHHTSSCTTCH-------HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHhcCCChHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHH
Confidence            999888 8 99999999999975544432       12222222222222222        4444444332         


Q ss_pred             -----HHHHHHhh--cCHhHHHHHHHhhhccCCCchhHHHHHHHHHHh
Q 024043          221 -----DIAASMDE--EDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEK  261 (273)
Q Consensus       221 -----~ll~a~~~--~d~~~~~~~~~~~~~~~~ld~~~~~~l~~~~~~  261 (273)
                           -++..+..  ++.+.+.+.+..++..+.+||-....+.-.+-.
T Consensus       204 W~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~L  251 (349)
T 3q7a_A          204 WGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGF  251 (349)
T ss_dssp             HHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence                 22322221  345568888998888888888776665544433

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.01  E-value=0.0032  Score=43.55  Aligned_cols=66  Identities=11%  Similarity=0.075  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 024043          112 ARYYKEIAELYESEHN---IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSL  183 (273)
Q Consensus       112 a~~l~~lg~~~~~~g~---~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~  183 (273)
                      +..+..+|.++...++   .++|..++++|+.+-...      ..++..+|.++...|+|++|+.+|++++...+
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~------~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p   74 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN------EAALSLIANDHFISFRFQEAIDTWVLLLDSND   74 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            4567777888765544   799999999999985432      46788899999999999999999999975433

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.80  E-value=0.05  Score=48.42  Aligned_cols=192  Identities=13%  Similarity=0.099  Sum_probs=117.6

Q ss_pred             HHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHH
Q 024043           54 ATYVKLANCHLK-LESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQT  131 (273)
Q Consensus        54 ~~~~~a~~~~~~-~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A  131 (273)
                      +-+.....-..+ .........++..+|..|.+. ++++|+++|.++.+.....+.   ....+..+-.++...+++..+
T Consensus       111 ~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~---kid~~l~~irl~l~~~d~~~~  187 (429)
T 4b4t_R          111 KELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA---KIDVMLTIARLGFFYNDQLYV  187 (429)
T ss_dssp             HHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS---HHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH---HHHHHHHHHHHHHHhccHHHH
Confidence            334444444433 222233445677888888766 999999999998775544433   233444444555556999999


Q ss_pred             HHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHH
Q 024043          132 IVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVA  211 (273)
Q Consensus       132 ~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~  211 (273)
                      ..++.+|..+....+++...+......|.++...++|..|...|-.+.........  ..........++|.+...+...
T Consensus       188 ~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e~--~~~~~~~~y~~l~al~~~~r~~  265 (429)
T 4b4t_R          188 KEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSIEL--TSYESIATYASVTGLFTLERTD  265 (429)
T ss_dssp             HHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCSCH--HHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCccch--hhHHHHHHHHHHHHHhcCCHHH
Confidence            99999999999888876555566666777788889999999999887643222211  1222333445566555444322


Q ss_pred             H----------HH------HHHHHHHHHHHHhhcCHhH-HHHHHHhhhccCCCchh
Q 024043          212 I----------TN------ALERYQDIAASMDEEDIAK-FTDVVKEFDSMTPLDPW  250 (273)
Q Consensus       212 A----------~~------~~~~~~~ll~a~~~~d~~~-~~~~~~~~~~~~~ld~~  250 (273)
                      -          ..      .+..+..++.++-.++... +...+..+......|++
T Consensus       266 l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~  321 (429)
T 4b4t_R          266 LKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASYFPYLLETYANVLIPCKY  321 (429)
T ss_dssp             HHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTCTT
T ss_pred             HHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhccCHH
Confidence            1          11      1222335566665555544 45556666666665654

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.63  E-value=0.0039  Score=52.41  Aligned_cols=86  Identities=13%  Similarity=0.167  Sum_probs=69.9

Q ss_pred             CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHH
Q 024043           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE-----HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQY  161 (273)
Q Consensus        87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~-----g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~  161 (273)
                      ...+|...+++|+++-..    ...+.++..+|.+|...     |+.++|.++|++|+++.....     ..++.-+|..
T Consensus       178 ~l~~A~a~lerAleLDP~----~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~-----id~~v~YA~~  248 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPS----YQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHD-----PDHHITYADA  248 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTT----HHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTC-----SHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCC----cccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCC-----chHHHHHHHH
Confidence            357888888888887443    34567999999999995     999999999999999976321     3567888998


Q ss_pred             HHH-hcCHHHHHHHHHHHHHH
Q 024043          162 AAE-LEQYHKSIEIYEEIARQ  181 (273)
Q Consensus       162 ~~~-~g~y~~A~~~~~~~~~~  181 (273)
                      ++. .|++++|..++++++..
T Consensus       249 l~~~~gd~~~a~~~L~kAL~a  269 (301)
T 3u64_A          249 LCIPLNNRAGFDEALDRALAI  269 (301)
T ss_dssp             TTTTTTCHHHHHHHHHHHHHC
T ss_pred             HHHhcCCHHHHHHHHHHHHcC
Confidence            888 49999999999999754

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.62  E-value=0.11  Score=46.49  Aligned_cols=118  Identities=10%  Similarity=0.031  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHH-HHHhcCChh
Q 024043           32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVN-MFCDIGRLS  109 (273)
Q Consensus        32 A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~-~~~~~g~~~  109 (273)
                      -+.+-...+.+|...|++.+|.+.......=.....+.......+.....+|... ++.+|...+.++.. .+.....+.
T Consensus       136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~  215 (445)
T 4b4t_P          136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES  215 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence            4557778899999999999999988876533334456677777777777777666 99999999999865 555566778


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcc
Q 024043          110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT  149 (273)
Q Consensus       110 ~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~  149 (273)
                      ..+..+.-.|.++...++|.+|..+|..+.+.+...+++.
T Consensus       216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~  255 (445)
T 4b4t_P          216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEA  255 (445)
T ss_dssp             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHH
Confidence            8899999999999999999999999999998887666543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.60  E-value=0.026  Score=42.68  Aligned_cols=82  Identities=7%  Similarity=0.023  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHH
Q 024043          128 IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE---QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQL  204 (273)
Q Consensus       128 ~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g---~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l  204 (273)
                      ...+.+.|.+++.    .+.  ...++.+++|.++++..   +..+++.+++.++...  .|   ...+++++++++.+.
T Consensus        14 l~~~~~~y~~e~~----~~~--~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p---~~~rd~lY~LAv~~~   82 (152)
T 1pc2_A           14 LLKFEKKFQSEKA----AGS--VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SK---EEQRDYVFYLAVGNY   82 (152)
T ss_dssp             HHHHHHHHHHHHH----TTC--CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CH---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc----cCC--CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--Cc---cchHHHHHHHHHHHH
Confidence            3445555655543    122  23578999999999988   6679999999997643  11   134678899999999


Q ss_pred             hcCCHHHHHHHHHHHH
Q 024043          205 CKGDVVAITNALERYQ  220 (273)
Q Consensus       205 ~~gd~~~A~~~~~~~~  220 (273)
                      ..||+.+|+++++...
T Consensus        83 kl~~Y~~A~~y~~~lL   98 (152)
T 1pc2_A           83 RLKEYEKALKYVRGLL   98 (152)
T ss_dssp             HTSCHHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHH
Confidence            9999999999999864

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.59  E-value=0.17  Score=47.88  Aligned_cols=86  Identities=7%  Similarity=0.006  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHhcc-CHHHHHHHHHHH------HHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q 024043           74 QAYVDAAHCYKKT-SSNEAISCLEQA------VNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE  146 (273)
Q Consensus        74 ~~~~~~~~~~~~~-~~~eA~~~~~~A------l~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~  146 (273)
                      ..+.++|..+.+. +++.|..||.++      ..++...|+..    .+..++.+....|++..|..+|.+       .|
T Consensus       682 ~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~----~~~~~~~~a~~~~~~~~A~~~~~~-------~g  750 (814)
T 3mkq_A          682 MKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKE----GLVTLAKDAETTGKFNLAFNAYWI-------AG  750 (814)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHH----HHHHHHHHHHHTTCHHHHHHHHHH-------HT
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHH----HHHHHHHHHHHcCchHHHHHHHHH-------cC
Confidence            4667888888766 899999888775      44444455433    244566666666777776666543       12


Q ss_pred             CcccHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 024043          147 VTTSANQCKQKVAQYAAELEQYHKSIEIYEE  177 (273)
Q Consensus       147 ~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~  177 (273)
                      +.       ...-.+|.+++++++|+.+-++
T Consensus       751 ~~-------~~a~~~~~~~~~~~~A~~lA~~  774 (814)
T 3mkq_A          751 DI-------QGAKDLLIKSQRFSEAAFLGST  774 (814)
T ss_dssp             CH-------HHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CH-------HHHHHHHHHcCChHHHHHHHHH
Confidence            21       1223455666666666665544

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.54  E-value=0.28  Score=41.11  Aligned_cols=84  Identities=13%  Similarity=0.232  Sum_probs=62.7

Q ss_pred             CHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHH
Q 024043          127 NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL-----EQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGI  201 (273)
Q Consensus       127 ~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~-----g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl  201 (273)
                      ...+|...+++|+++-+.-    ..+.++..+|.+|...     |+.++|.++|++++...++...      ...+-.+.
T Consensus       178 ~l~~A~a~lerAleLDP~~----~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~i------d~~v~YA~  247 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSY----QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDP------DHHITYAD  247 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTH----HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCS------HHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCc----ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCc------hHHHHHHH
Confidence            3678899999999996532    3456899999999995     9999999999999987775411      12233344


Q ss_pred             HHHh-cCCHHHHHHHHHHHH
Q 024043          202 CQLC-KGDVVAITNALERYQ  220 (273)
Q Consensus       202 ~~l~-~gd~~~A~~~~~~~~  220 (273)
                      .+.. .||...|.+.+++..
T Consensus       248 ~l~~~~gd~~~a~~~L~kAL  267 (301)
T 3u64_A          248 ALCIPLNNRAGFDEALDRAL  267 (301)
T ss_dssp             HTTTTTTCHHHHHHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHH
Confidence            4444 589999999999864

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.37  E-value=0.016  Score=39.93  Aligned_cols=65  Identities=15%  Similarity=-0.034  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHhcc----CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043           74 QAYVDAAHCYKKT----SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (273)
Q Consensus        74 ~~~~~~~~~~~~~----~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~  144 (273)
                      ..+...|.++...    ..++|..++++|+.+-..+      .+++..+|..+...|+|++|+.+++++++....
T Consensus         7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~------~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN------EAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            4455566665322    4799999999999986655      358899999999999999999999999987665

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=96.30  E-value=0.42  Score=40.47  Aligned_cols=196  Identities=12%  Similarity=0.008  Sum_probs=132.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHHh
Q 024043           27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT--SSNEAISCLEQAVNMFCD  104 (273)
Q Consensus        27 ~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~--~~~eA~~~~~~Al~~~~~  104 (273)
                      .+|++|+++....+..+-..|++..|.+.-.-.++++.+.+.+.. .....++..++...  ...+=.++..+|+.-..+
T Consensus        47 ~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~-~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~  125 (312)
T 2wpv_A           47 KSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVD-DISVARLVRLIAELDPSEPNLKDVITGMNNWSIK  125 (312)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCS-HHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhh
Confidence            799999999999999999999999999999999999988774432 23566777787765  222346777888888877


Q ss_pred             cCC-hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH------------HHHHhcc--CCcccHHHHH-HHHHHHHHHhcCH
Q 024043          105 IGR-LSMAARYYKEIAELYESEHNIEQTIVFFEKA------------ADMFQNE--EVTTSANQCK-QKVAQYAAELEQY  168 (273)
Q Consensus       105 ~g~-~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~A------------l~~~~~~--~~~~~~~~~~-~~~a~~~~~~g~y  168 (273)
                      .|. +.+-......+|..|...|++.+|..+|-..            .+.+...  +.+.. ...+ .+....|..+|+.
T Consensus       126 ~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e-~dlf~~RaVL~yL~l~n~  204 (312)
T 2wpv_A          126 FSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDST-VAEFFSRLVFNYLFISNI  204 (312)
T ss_dssp             TSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHH-HHHHHHHHHHHHHHTTBH
T ss_pred             cCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcch-HHHHHHHHHHHHHHhcCH
Confidence            755 6677788999999999999999999988421            2333332  43333 3333 4444456788999


Q ss_pred             HHHHHHHHHHHHHHhc------------cchhhh-c-hh-hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 024043          169 HKSIEIYEEIARQSLN------------NNLLKY-G-VK-GHLLNAGICQLCKGDVVAITNALERYQDIAA  224 (273)
Q Consensus       169 ~~A~~~~~~~~~~~~~------------~~~~~~-~-~~-~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~  224 (273)
                      ..|...|.........            ....++ . .. --+..+.+.-+..++..-.+...+.|...|+
T Consensus       205 ~~A~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~p~~pllnF~~lLl~t~e~~~~~lF~~L~~~Y~~~L~  275 (312)
T 2wpv_A          205 SFAHESKDIFLERFIEKFHPKYEKIDKNGYEIVFFEDYSDLNFLQLLLITCQTKDKSYFLNLKNHYLDFSQ  275 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCEEEEEETTEEEEEESSCHHHHHHHHHHHHHHHTCHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcccccccccccccCCCCCCCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            9999988876533211            000011 0 00 1222333444556777777788888887776

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=96.07  E-value=0.45  Score=43.12  Aligned_cols=151  Identities=11%  Similarity=0.073  Sum_probs=94.3

Q ss_pred             HHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHHHhcc
Q 024043           76 YVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH---------NIEQTIVFFEKAADMFQNE  145 (273)
Q Consensus        76 ~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g---------~~~~A~~~y~~Al~~~~~~  145 (273)
                      +..+-+.|.+. ++++|++.|++....    |-.. -..+++.+=.++...+         ..++|.+.|.+-.    ..
T Consensus        29 l~~~id~c~k~G~~~~A~~lf~~M~~~----Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~----~~   99 (501)
T 4g26_A           29 LKQKLDMCSKKGDVLEALRLYDEARRN----GVQL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMI----VD   99 (501)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHH----TCCC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHH----HT
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHH----Hh
Confidence            44445555444 999999999887643    2111 1224444444444333         3566666665432    23


Q ss_pred             CCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH-----
Q 024043          146 EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ-----  220 (273)
Q Consensus       146 ~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~-----  220 (273)
                      |-... ..++..+-..+.+.|++++|.++|++.......     .. ...|..+...+...|+.+.|.+.|++..     
T Consensus       100 G~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~-----Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~  172 (501)
T 4g26_A          100 KVVPN-EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ-----PR-LRSYGPALFGFCRKGDADKAYEVDAHMVESEVV  172 (501)
T ss_dssp             TCCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC-----CC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----Cc-cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            33333 357888999999999999999999987532211     11 1234455566788999999999998754     


Q ss_pred             -------HHHHHH-hhcCHhHHHHHHHhhh
Q 024043          221 -------DIAASM-DEEDIAKFTDVVKEFD  242 (273)
Q Consensus       221 -------~ll~a~-~~~d~~~~~~~~~~~~  242 (273)
                             .+|.++ ..|+.++..+.+.+-.
T Consensus       173 Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr  202 (501)
T 4g26_A          173 PEEPELAALLKVSMDTKNADKVYKTLQRLR  202 (501)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence                   677776 5577776666665543

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.94  E-value=0.13  Score=45.67  Aligned_cols=106  Identities=13%  Similarity=0.020  Sum_probs=86.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 024043           38 KAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYK  116 (273)
Q Consensus        38 ~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~  116 (273)
                      ..|..|...|++++|.++|.++..-....+.   ....+.....++... ++..+..++.++..+....|++...++...
T Consensus       136 ~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~---kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~  212 (429)
T 4b4t_R          136 NLGEYYAQIGDKDNAEKTLGKSLSKAISTGA---KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT  212 (429)
T ss_dssp             HHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhcCChHH---HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence            4688899999999999999998776544443   344555555555444 999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q 024043          117 EIAELYESEHNIEQTIVFFEKAADMFQNEE  146 (273)
Q Consensus       117 ~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~  146 (273)
                      -.|.++...++|..|..+|..+..-+...+
T Consensus       213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e  242 (429)
T 4b4t_R          213 YYGIHCLAVRNFKEAAKLLVDSLATFTSIE  242 (429)
T ss_dssp             HHHHGGGGTSCHHHHHHHHHHHHHHSCCSC
T ss_pred             HHHHHHHHhChHHHHHHHHHHHhccCCccc
Confidence            999999999999999999999887775544

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=95.70  E-value=0.12  Score=37.63  Aligned_cols=71  Identities=15%  Similarity=0.106  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHhcCCHHH---HHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccc
Q 024043          112 ARYYKEIAELYESEHNIEQ---TIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNN  186 (273)
Q Consensus       112 a~~l~~lg~~~~~~g~~~~---A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~  186 (273)
                      ..+..+.|.++....+...   ++.+++.-+.   . +.+.....|+..+|..+.++|+|++|..+++.++...++++
T Consensus        35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~---~-~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~  108 (126)
T 1nzn_A           35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP---K-GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN  108 (126)
T ss_dssp             HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT---T-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh---c-CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH
Confidence            3577788888888766655   6666665332   2 22445679999999999999999999999999998888774

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.55  E-value=1  Score=42.49  Aligned_cols=26  Identities=15%  Similarity=0.239  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043          113 RYYKEIAELYESEHNIEQTIVFFEKA  138 (273)
Q Consensus       113 ~~l~~lg~~~~~~g~~~~A~~~y~~A  138 (273)
                      ..|.++|..+...|+++.|.++|.++
T Consensus       682 ~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          682 MKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            58899999999999999999999875

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=95.40  E-value=1.5  Score=39.57  Aligned_cols=64  Identities=9%  Similarity=-0.052  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Q 024043          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE-QYHKSIEIYEEIARQS  182 (273)
Q Consensus       112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g-~y~~A~~~~~~~~~~~  182 (273)
                      ..++..-+......+..+.|...|.+| .   ..+  . ...++...|.+-...+ +++.|..+|++++...
T Consensus       286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A-~---~~~--~-~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~  350 (493)
T 2uy1_A          286 DLLRINHLNYVLKKRGLELFRKLFIEL-G---NEG--V-GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH  350 (493)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHH-T---TSC--C-CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHh-h---CCC--C-ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence            345555555555555677777777776 1   111  1 1234555555555555 4677777777766543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=94.54  E-value=2.5  Score=37.97  Aligned_cols=46  Identities=4%  Similarity=0.104  Sum_probs=24.6

Q ss_pred             CHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 024043          127 NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI  178 (273)
Q Consensus       127 ~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~  178 (273)
                      +++.|...|++++..+..  .    ...+...++.....|+.++|..+|+++
T Consensus       335 d~~~ar~ife~al~~~~~--~----~~~~~~yid~e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          335 SRATPYNIFSSGLLKHPD--S----TLLKEEFFLFLLRIGDEENARALFKRL  380 (493)
T ss_dssp             CSHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred             ChHHHHHHHHHHHHHCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            456666666666655421  1    123444555555566666666666654

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=94.20  E-value=1.3  Score=33.28  Aligned_cols=120  Identities=8%  Similarity=0.115  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHhcCCH------HHHHHHHHHHHHHHhccCCcc--cHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          114 YYKEIAELYESEHNI------EQTIVFFEKAADMFQNEEVTT--SANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       114 ~l~~lg~~~~~~g~~------~~A~~~y~~Al~~~~~~~~~~--~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                      .|-.-....+..|++      ++-++.|++|+...+-.....  .-...+.++|.. ...++.++|.++|+.++..   .
T Consensus        15 ~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~---h   90 (161)
T 4h7y_A           15 DWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN---C   90 (161)
T ss_dssp             HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH---C
T ss_pred             HHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH---h
Confidence            344444555555777      888899999998876654333  334666777755 5669999999999999763   2


Q ss_pred             chhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCHhHHHHHHHhhhccC
Q 024043          186 NLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDIAASMDEEDIAKFTDVVKEFDSMT  245 (273)
Q Consensus       186 ~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~a~~~~d~~~~~~~~~~~~~~~  245 (273)
                        .++  +..+.....--+.+|+..+|++.+.+...    +...+.+.++.++.....-.
T Consensus        91 --KkF--AKiwi~~AqFEiRqgnl~kARkILg~AiG----~~~k~~~~le~a~~nl~~~~  142 (161)
T 4h7y_A           91 --KKF--AFVHISFAQFELSQGNVKKSKQLLQKAVE----RGAVPLEMLEIALRNLNLQK  142 (161)
T ss_dssp             --TTB--HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCBCHHHHHHHHHHHHTTC
T ss_pred             --HHH--HHHHHHHHHHHHHcccHHHHHHHHHHHhc----cCCCcHHHHHHHHHhhhcCC
Confidence              133  22333333334669999999999999732    45667788888887765433

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=94.03  E-value=2.5  Score=36.02  Aligned_cols=195  Identities=10%  Similarity=0.121  Sum_probs=129.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHHH
Q 024043           27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT---SSNEAISCLEQAVNMFC  103 (273)
Q Consensus        27 ~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~---~~~eA~~~~~~Al~~~~  103 (273)
                      ++|++|+++....+..+...|++..+.+.-.-.++++.+.+-+... ....++..++...   .+. =..+..+|+.-..
T Consensus        49 k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~-~~~~rL~~L~~~~~~~~p~-r~~fi~~ai~WS~  126 (336)
T 3lpz_A           49 GNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDG-ASRGKLLGCLRLFQPGEPV-RKRFVKEMIDWSK  126 (336)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHTTSCTTCHH-HHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhCCCCCcH-HHHHHHHHHHHHh
Confidence            7999999999999999999999999999999999999887633222 4666788888776   333 3566777777776


Q ss_pred             hcC-ChhHHHHHHHHHHHHHHhcCCHHHHHHHHHH------------HHHHHhccCCcccHHHHHHHHHHHHHHhcCHHH
Q 024043          104 DIG-RLSMAARYYKEIAELYESEHNIEQTIVFFEK------------AADMFQNEEVTTSANQCKQKVAQYAAELEQYHK  170 (273)
Q Consensus       104 ~~g-~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~------------Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~  170 (273)
                      +.| .+.+-......+|..|.+.+++.+|..+|--            -.+++...+ +....-...+.-..|..+++...
T Consensus       127 ~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~-~~e~dlfiaRaVL~yL~l~n~~~  205 (336)
T 3lpz_A          127 KFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDE-SHTAPLYCARAVLPYLLVANVRA  205 (336)
T ss_dssp             HHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSC-GGGHHHHHHHHHHHHHHTTCHHH
T ss_pred             hcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHhCCHHH
Confidence            654 3556667888999999999999999887731            122233333 33333333444456778899999


Q ss_pred             HHHHHHHHHHHHhc-cchhh-------------h-chh-hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 024043          171 SIEIYEEIARQSLN-NNLLK-------------Y-GVK-GHLLNAGICQLCKGDVVAITNALERYQDIAA  224 (273)
Q Consensus       171 A~~~~~~~~~~~~~-~~~~~-------------~-~~~-~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~  224 (273)
                      |...+......... .+...             + ... --+..+.++-+..+...-.+...+.|...++
T Consensus       206 A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q~~~~~lF~~L~~~Y~~~l~  275 (336)
T 3lpz_A          206 ANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGSPDLFRQLKSKYEANLN  275 (336)
T ss_dssp             HHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHHSCCHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            98877665432111 11000             0 000 1133344445566777777777778876665

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}

Probab=93.87  E-value=0.32  Score=38.50  Aligned_cols=88  Identities=9%  Similarity=0.133  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHH-----HHHHHHHH
Q 024043          152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER-----YQDIAASM  226 (273)
Q Consensus       152 ~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~-----~~~ll~a~  226 (273)
                      ..-+.-+|.++...++|.+|-+.+..+...++.+.  ......++.-+..+.+..|++.. ...++.     |..+..|+
T Consensus        14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~--~~~k~~IL~yLIp~~Ll~G~iP~-~~ll~~~~~~~y~~L~~Av   90 (203)
T 3t5x_A           14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS--QKNKRMILIYLLPVKMLLGHMPT-VELLKKYHLMQFAEVTRAV   90 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC--HHHHHHHHHHHHHHHHHTTCEEC-HHHHHHTTCGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH--HHHHHHHHHHHHHHHHHcCCCCC-HHHhhhCchhHHHHHHHHH
Confidence            44567788888888888888888888876554331  11122233334556677777533 233333     55888999


Q ss_pred             hhcCHhHHHHHHHhhh
Q 024043          227 DEEDIAKFTDVVKEFD  242 (273)
Q Consensus       227 ~~~d~~~~~~~~~~~~  242 (273)
                      ..||...|.+++..+.
T Consensus        91 r~Gdl~~f~~~l~~~~  106 (203)
T 3t5x_A           91 SEGNLLLLHEALAKHE  106 (203)
T ss_dssp             HHTCHHHHHHHHHHTH
T ss_pred             HhCCHHHHHHHHHHhH
Confidence            9999999999998865

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=93.83  E-value=1.3  Score=34.09  Aligned_cols=43  Identities=14%  Similarity=0.052  Sum_probs=30.7

Q ss_pred             cCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 024043          125 EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI  178 (273)
Q Consensus       125 ~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~  178 (273)
                      .|+++.|.+..++.       +    ....|.++|......|+++-|.++|+++
T Consensus        18 lg~l~~A~e~a~~l-------~----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B           18 YGNLDAALDEAKKL-------N----DSITWERLIQEALAQGNASLAEMIYQTQ   60 (177)
T ss_dssp             TTCHHHHHHHHHHH-------C----CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHh-------C----CHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence            37777777765432       1    1356888888888888888888888876

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=93.39  E-value=0.33  Score=44.00  Aligned_cols=62  Identities=13%  Similarity=0.158  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA  179 (273)
Q Consensus       112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~  179 (273)
                      -+++..+|.+......++.|..+|.+|+.+.+..|      ..++.+|.+....|+.-+|+-+|.+++
T Consensus       152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G------~~~nqLavla~~~~~~l~a~y~y~rsl  213 (497)
T 1ya0_A          152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG------QPYNQLAILASSKGDHLTTIFYYCRSI  213 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCC------chHHHHHHHHhcccccHHHHHHHHHHH
Confidence            45888999999999999999999999999998877      458899999999999999999998875

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=93.06  E-value=0.95  Score=33.56  Aligned_cols=73  Identities=8%  Similarity=0.078  Sum_probs=55.6

Q ss_pred             hHHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          109 SMAARYYKEIAELYESEHNI---EQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       109 ~~~a~~l~~lg~~~~~~g~~---~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                      .-...+..+.|.++....+.   .+++.+++.-+.   .  .+....+|+..+|.-+.++|+|++|..+.+..+...+++
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~---~--~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n  110 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK---E--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN  110 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH---H--CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh---c--CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence            34566778888888877544   467777766444   2  233556899999999999999999999999998887776


Q ss_pred             c
Q 024043          186 N  186 (273)
Q Consensus       186 ~  186 (273)
                      .
T Consensus       111 ~  111 (144)
T 1y8m_A          111 K  111 (144)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=92.99  E-value=2.3  Score=37.04  Aligned_cols=93  Identities=10%  Similarity=-0.035  Sum_probs=64.7

Q ss_pred             cCCHHHHHHHHHHHHHHHhcc---C--CcccH-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchh
Q 024043          125 EHNIEQTIVFFEKAADMFQNE---E--VTTSA-----------NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLL  188 (273)
Q Consensus       125 ~g~~~~A~~~y~~Al~~~~~~---~--~~~~~-----------~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~  188 (273)
                      .|+++.|+..+.+|+++++..   +  ...+.           ..++..++..+...|++.+|+..+++.+...+-+.  
T Consensus       128 ~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E--  205 (388)
T 2ff4_A          128 AGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYRE--  205 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--
Confidence            478888888888888887642   1  11111           13455666777889999999999988865433221  


Q ss_pred             hhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 024043          189 KYGVKGHLLNAGICQLCKGDVVAITNALERYQDIAA  224 (273)
Q Consensus       189 ~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~  224 (273)
                           ..+..+..++...|+...|.+.|+++...+.
T Consensus       206 -----~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~  236 (388)
T 2ff4_A          206 -----PLWTQLITAYYLSDRQSDALGAYRRVKTTLA  236 (388)
T ss_dssp             -----HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence                 1334556778899999999999999886543

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=92.88  E-value=1.3  Score=32.37  Aligned_cols=71  Identities=8%  Similarity=0.049  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccc
Q 024043          111 AARYYKEIAELYESEHN---IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNN  186 (273)
Q Consensus       111 ~a~~l~~lg~~~~~~g~---~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~  186 (273)
                      ...+..+.|.++....+   ..+++..++..+.   ..  +....+|+.-+|.-+.++|+|++|..+.+.++...+++.
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~---~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~  112 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK---EA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK  112 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH---HC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh---cC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence            34567777777777644   4467777765443   22  345679999999999999999999999999987777764

>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*

Probab=92.31  E-value=1.7  Score=38.49  Aligned_cols=95  Identities=12%  Similarity=0.094  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----c-----C----------------------------CHHHH
Q 024043           30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLK----L-----E----------------------------SKHEA   72 (273)
Q Consensus        30 ~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~----~-----~----------------------------~~~~a   72 (273)
                      +-=..++.+.+..+...++|.+|+-|+..++.+.-+    .     +                            ...+.
T Consensus         8 dl~~~wl~~La~~h~~~~n~~EAa~cl~~~aaliae~L~~~~~~~~~~~~f~~i~p~~~ee~~~~~d~g~~~~~fte~~l   87 (428)
T 2wm9_A            8 ELRKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGVFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVL   87 (428)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHTTSSSCCGGGGTTTCGGGGGGC---------CCSSSHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhcCCCccchhccccccCCCccccCHHHH
Confidence            344567778889999999999999998866654322    0     0                            11122


Q ss_pred             HHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh
Q 024043           73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES  124 (273)
Q Consensus        73 a~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~  124 (273)
                      ...+..+...+.+. .++.|+..|+..+.+|....|+...+.++..++.+|..
T Consensus        88 ~~ll~~ai~~f~kg~~~E~ai~~~k~L~~~ye~~~dy~~Ls~~~~~~a~~y~~  140 (428)
T 2wm9_A           88 MELLEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSK  140 (428)
T ss_dssp             HHHHHHHHHHHHHTTCGGGHHHHHTTTHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            23455566666655 67777777777777777777777777777777666654

>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A

Probab=92.20  E-value=4.4  Score=35.92  Aligned_cols=128  Identities=16%  Similarity=0.093  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCChhHHHHH
Q 024043           35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARY  114 (273)
Q Consensus        35 ~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~  114 (273)
                      +.-+..+.|+..++.+-=+.+..+.++.+.+.+|..+||.++...+.++.-.+ ..-+...... ..+...-.+......
T Consensus        17 ~~~~l~~~y~~~~~~el~i~~l~~L~~~h~~~~ny~EAa~~l~lhA~l~~w~~-~~~~~~~~~~-~~~~~qt~~~~ke~L   94 (436)
T 2yin_A           17 CTVNLLNFYKDNNREEMYIRYLYKLRDLHLDCDNYTEAAYTLLLHTWLLKWSD-EQCASQVMQT-GQQHPQTHRQLKETL   94 (436)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSC-CC---------------CHHHHHHHH
T ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHhCCCc-cccCcccccC-CCCccccHHHHHHHH
Confidence            44566778888888888888888888888888888888888866665543221 1101100000 001111111222345


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-CCcccHHHHHHHHHHHHHH
Q 024043          115 YKEIAELYESEHNIEQTIVFFEKAADMFQNE-EVTTSANQCKQKVAQYAAE  164 (273)
Q Consensus       115 l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~-~~~~~~~~~~~~~a~~~~~  164 (273)
                      +..+...+..-+.++.|+..|+..+..|+.. .+....+.++..++.+|..
T Consensus        95 ~~~~i~~f~kg~~~E~ai~l~k~L~~~yE~~~~Dy~~Ls~~~~~~a~~y~~  145 (436)
T 2yin_A           95 YETIIGYFDKGKMWEEAISLCKELAEQYEMEIFDYELLSQNLIQQAKFYES  145 (436)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6677777777788888899998888888875 6656666777777766653

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=92.17  E-value=3.6  Score=39.14  Aligned_cols=58  Identities=9%  Similarity=0.099  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 024043          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEE  177 (273)
Q Consensus       114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~  177 (273)
                      .|..=+.-+...|+|+-|+++.++|+.+..      +...+|..++.+|+.+|+|+.|+-.+.-
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aP------seF~tW~~La~vYi~l~d~e~ALLtLNS  396 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELAL------DSFESWYNLARCHIKKEEYEKALFAINS  396 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCS------SCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCc------hhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence            444445555566999999999999999864      4578999999999999999999975544

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=92.14  E-value=3.2  Score=31.93  Aligned_cols=95  Identities=5%  Similarity=0.036  Sum_probs=55.5

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHH
Q 024043           95 LEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEI  174 (273)
Q Consensus        95 ~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~  174 (273)
                      ++.|.++....++    ...|..+|..-...|+++-|.++|.++-++              ..+-.+|.-.|+-++=..+
T Consensus        21 l~~A~e~a~~l~~----~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~--------------~~L~~Ly~~tg~~e~L~kl   82 (177)
T 3mkq_B           21 LDAALDEAKKLND----SITWERLIQEALAQGNASLAEMIYQTQHSF--------------DKLSFLYLVTGDVNKLSKM   82 (177)
T ss_dssp             HHHHHHHHHHHCC----HHHHHHHHHHHHHTTCHHHHHHHHHHTTCH--------------HHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHhCC----HHHHHHHHHHHHHcCChHHHHHHHHHhCCH--------------HHHHHHHHHhCCHHHHHHH
Confidence            3444444444333    447999999999999999999999764333              2334455556665443333


Q ss_pred             HHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043          175 YEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY  219 (273)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~  219 (273)
                      -+.+.  ..+          .+..+..+++..||++++.+.+.+.
T Consensus        83 a~iA~--~~g----------~~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           83 QNIAQ--TRE----------DFGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHHH--HTT----------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHH--HCc----------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence            22221  111          1233456677778887777776653

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=92.13  E-value=0.31  Score=44.12  Aligned_cols=62  Identities=18%  Similarity=0.256  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043           74 QAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADM  141 (273)
Q Consensus        74 ~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~  141 (273)
                      +++..+|++.+-. .+..|..+|.+|+.+.+..|.      .++.+|.+....|+.-+|+=+|.+++..
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~------~~nqLavla~~~~~~l~a~y~y~rsl~~  215 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQ------PYNQLAILASSKGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSH------HHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCc------hHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence            4677899998766 899999999999999999997      8999999999999999999999998753

>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens}

Probab=92.10  E-value=4.7  Score=33.74  Aligned_cols=120  Identities=13%  Similarity=-0.030  Sum_probs=87.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHH
Q 024043           27 SKYEDAADLFDKAANSFKLAKS---WDKAGATYVKLANCHLK-LESKHEAAQAYVDAAHCYKKT---SSNEAISCLEQAV   99 (273)
Q Consensus        27 ~~~~~A~~~~~~a~~~~~~~~~---~~~A~~~~~~a~~~~~~-~~~~~~aa~~~~~~~~~~~~~---~~~eA~~~~~~Al   99 (273)
                      +..+.+..+|-+++.+-...+-   -+-|-++|.+|..+|++ ..+...+..+...+.......   ..+.-...-.++.
T Consensus        93 ~~~elalrL~Lq~A~~ad~~~~~~~e~iaYEFf~qAf~iYEe~IsdSk~Q~~al~~ii~tL~~~~~f~~enye~L~tk~t  172 (298)
T 2r17_C           93 ELAELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCA  172 (298)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHccCCCHhhHHHHHHHHH
Confidence            3457788888888877777766   67778899999999986 777777777777666666555   4444444445555


Q ss_pred             HHHHhcCChhHHHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHHHHhccC
Q 024043          100 NMFCDIGRLSMAARYYKEIAELYES----------EHNIEQTIVFFEKAADMFQNEE  146 (273)
Q Consensus       100 ~~~~~~g~~~~~a~~l~~lg~~~~~----------~g~~~~A~~~y~~Al~~~~~~~  146 (273)
                      ....+.=+...++++....+.+++.          ..+.+..++|++||+.+....-
T Consensus       173 ~~askLLKK~dQcraV~~cshLfW~~~~~~~~~~~~rd~krVleCLqkaLkiA~~~~  229 (298)
T 2r17_C          173 LAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCM  229 (298)
T ss_dssp             HHHHTCSSHHHHHHHHHHTHHHHHTCBCTTTTTCBCCCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHhccCcHHHHHHHHHHHHHhcCCCccccchhhccchHHHHHHHHHHHHHHHHHh
Confidence            5555666667778888888998874          1478899999999999887653

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=92.07  E-value=1.8  Score=31.69  Aligned_cols=63  Identities=11%  Similarity=0.009  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          152 NQCKQKVAQYAAELEQ---YHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       152 ~~~~~~~a~~~~~~g~---y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      ..+..++|+++++..+   ..++|.+++......+      ...+++++.+++.+...||+..|+++.+...
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~------~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL  105 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE------SRRRECLYYLTIGCYKLGEYSMAKRYVDTLF  105 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG------GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc------chhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            4789999999998764   4689999988765332      1356788888999999999999999998864

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=91.65  E-value=3.3  Score=31.08  Aligned_cols=49  Identities=16%  Similarity=0.183  Sum_probs=24.1

Q ss_pred             CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADM  141 (273)
Q Consensus        87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~  141 (273)
                      |+++|.+.|+.|+.+   ...+   |+++..-|+--..+|+.+.|...+.+|+.+
T Consensus        75 D~d~aR~vy~~a~~~---hKkF---AKiwi~~AqFEiRqgnl~kARkILg~AiG~  123 (161)
T 4h7y_A           75 EPDDARDYFQMARAN---CKKF---AFVHISFAQFELSQGNVKKSKQLLQKAVER  123 (161)
T ss_dssp             CGGGCHHHHHHHHHH---CTTB---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHH---hHHH---HHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence            555555555555544   2222   455555555444445555555555555543

>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}

Probab=91.22  E-value=3.2  Score=37.07  Aligned_cols=130  Identities=9%  Similarity=-0.009  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---cC--CcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-Hhccc
Q 024043          113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQN---EE--VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ-SLNNN  186 (273)
Q Consensus       113 ~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~---~~--~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~-~~~~~  186 (273)
                      -..+++-.+|.+.+++.-+...+ ++++-...   ..  ........+.-+|.++.-.++|.+|-+.+..+... ++.+.
T Consensus       177 ~l~n~L~kiYFkl~~~~lckni~-k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~  255 (455)
T 3t5v_B          177 YLVNKLNNIYFRIESPQLCSNIF-KNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPL  255 (455)
T ss_dssp             HHHHHHHHHHHHSSCCTTHHHHH-HTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHH-HHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccc
Confidence            34456667788888877766655 44433211   11  12344566788999999999999999999999877 66431


Q ss_pred             h---hhhchhhHHHHHHHHHHhcCCHHHH----H---HHHHH-HHHHHHHHhhcCHhHHHHHHHhhhc
Q 024043          187 L---LKYGVKGHLLNAGICQLCKGDVVAI----T---NALER-YQDIAASMDEEDIAKFTDVVKEFDS  243 (273)
Q Consensus       187 ~---~~~~~~~~~~~~gl~~l~~gd~~~A----~---~~~~~-~~~ll~a~~~~d~~~~~~~~~~~~~  243 (273)
                      .   .......++.-+..+.+..|+...-    +   ..+.. |..++.|+..||...|.+++..+..
T Consensus       256 ~~~~~~~n~~~ILkyLIpv~LLlG~~P~~~ll~k~~~~~L~~~y~~L~~AVr~Gdl~~F~~~L~~~~~  323 (455)
T 3t5v_B          256 TNQAITRNGTRILNYMIPTGLILGKMVKWGPLRPFLSQETIDNWSVLYKHVRYGNIQGVSLWLRQNER  323 (455)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCBCHHHHGGGSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred             cchhhhhHHHHHHHHHHHHHHHcCCCCCHHHHcccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHhHH
Confidence            0   0111122333345566777864221    1   23544 8899999999999999999998764

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.84  E-value=2.3  Score=37.18  Aligned_cols=155  Identities=10%  Similarity=0.097  Sum_probs=91.2

Q ss_pred             CHHHHHHHHHHHHHHHHhc-----------CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCc--ccHHH
Q 024043           87 SSNEAISCLEQAVNMFCDI-----------GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT--TSANQ  153 (273)
Q Consensus        87 ~~~eA~~~~~~Al~~~~~~-----------g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~--~~~~~  153 (273)
                      ++.+|++++.+........           ........+...++..|...|+.++|..+.+++-......++.  ...+.
T Consensus        91 d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~  170 (393)
T 4b4t_O           91 DFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNS  170 (393)
T ss_dssp             CHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHH
Confidence            7888888887653322211           1123344566788888888899999999999999888776543  23345


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHh-ccchhhhchhhHHHHHHHHHHhcCCHHHHHHH--------------HHH
Q 024043          154 CKQKVAQYAAELEQYHKSIEIYEEIARQSL-NNNLLKYGVKGHLLNAGICQLCKGDVVAITNA--------------LER  218 (273)
Q Consensus       154 ~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~--------------~~~  218 (273)
                      .+...+..+...++|..+....-....... ....+........+.++.+-+...+.....+.              +..
T Consensus       171 ~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~all~~~i~~f~eLL~~p~i~~L~~~~~~~~  250 (393)
T 4b4t_O          171 FYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPSTSITLAERQQLAYDLSISALLGDKIYNFGELLHHPIMETIVNDSNYDW  250 (393)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSSCSHHHHHHHHHHHHHHHHHCCSSCSTHHHHHSCCTTSSCSSSSTTH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHcCCCCCChHHHhCChHHHHhhcCCchHH
Confidence            556667777788898887776666543221 11111111112223444443332211111111              112


Q ss_pred             HHHHHHHHhhcCHhHHHHHHHhh
Q 024043          219 YQDIAASMDEEDIAKFTDVVKEF  241 (273)
Q Consensus       219 ~~~ll~a~~~~d~~~~~~~~~~~  241 (273)
                      +.+++.++..|+...|...+..+
T Consensus       251 l~~Ll~~f~~g~~~~f~~~~~~~  273 (393)
T 4b4t_O          251 LFQLLNALTVGDFDKFDSLIKVQ  273 (393)
T ss_dssp             HHHHHHHHHHTCHHHHHHHCCHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHh
Confidence            34788999999999998876544

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=90.78  E-value=1  Score=39.22  Aligned_cols=60  Identities=8%  Similarity=-0.057  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA  179 (273)
Q Consensus       114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~  179 (273)
                      ++..++..+...|++.+++..+.+++....-.      -..+..+-.++...|+..+|++.|++.-
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~------E~~~~~lm~al~~~Gr~~~Al~~y~~~r  232 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFEHPYR------EPLWTQLITAYYLSDRQSDALGAYRRVK  232 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            55567777888899999999999988775422      2457777788999999999999999874

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=90.58  E-value=0.69  Score=33.57  Aligned_cols=81  Identities=6%  Similarity=-0.017  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHh
Q 024043          129 EQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHK---SIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC  205 (273)
Q Consensus       129 ~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~---A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~  205 (273)
                      ..+...|.+++..    +.  ....+..++|+++++..+...   +|.+++......  .+   ...+++++.+++.+..
T Consensus        18 ~~~~~~y~~e~~~----~~--~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~--~p---~~~Rd~lY~LAvg~yk   86 (126)
T 1nzn_A           18 LKFEKKFQSEKAA----GS--VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SK---EEQRDYVFYLAVGNYR   86 (126)
T ss_dssp             HHHHHHHHHHHHH----SC--CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CH---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc----CC--CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--Cc---chHHHHHHHHHHHHHH
Confidence            3444555555432    22  224788999999999876655   999999876421  11   1356788889999999


Q ss_pred             cCCHHHHHHHHHHHH
Q 024043          206 KGDVVAITNALERYQ  220 (273)
Q Consensus       206 ~gd~~~A~~~~~~~~  220 (273)
                      .||+..|+++++...
T Consensus        87 lg~Y~~A~~~~~~lL  101 (126)
T 1nzn_A           87 LKEYEKALKYVRGLL  101 (126)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHH
Confidence            999999999998864

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=90.34  E-value=2.7  Score=42.02  Aligned_cols=128  Identities=8%  Similarity=-0.029  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC----CH-------------HHHHHHHHHHHHHHhcc-CHHHHHHHHH
Q 024043           35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLE----SK-------------HEAAQAYVDAAHCYKKT-SSNEAISCLE   96 (273)
Q Consensus        35 ~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~-------------~~aa~~~~~~~~~~~~~-~~~eA~~~~~   96 (273)
                      .|. .|.+|-..|++++|.++|.+|+.......    ..             .....-|..+..++.+. .++.++++.+
T Consensus       845 ~yl-~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~  923 (1139)
T 4fhn_B          845 VYL-KALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL  923 (1139)
T ss_dssp             HHH-HHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHH-HHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            354 38899999999999999999864331110    00             11224566677777665 7888888888


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHH
Q 024043           97 QAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS  171 (273)
Q Consensus        97 ~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A  171 (273)
                      .|++.. ..++.......|.++=..+...|+|++|......-    ...   .....|+.++-..+++.|..++=
T Consensus       924 lAi~~~-~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~----pd~---~~r~~cLr~LV~~lce~~~~~~L  990 (1139)
T 4fhn_B          924 LADASK-ETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL----STT---PLKKSCLLDFVNQLTKQGKINQL  990 (1139)
T ss_dssp             HHHHHC-CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH----HHS---SSCHHHHHHHHHHHHHHCCHHHH
T ss_pred             HHHHhc-cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC----CCH---HHHHHHHHHHHHHHHhCCChhhh
Confidence            888753 33555555667888888888889999887665322    111   12247788887777776665443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=90.13  E-value=3.2  Score=30.69  Aligned_cols=63  Identities=11%  Similarity=0.024  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          152 NQCKQKVAQYAAELEQ---YHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       152 ~~~~~~~a~~~~~~g~---y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      .++.+++|+++++..+   ..+++.+++......+.      ..+++++.+.+.+...||+..|+++.+...
T Consensus        39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~------~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL  104 (144)
T 1y8m_A           39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES------RRRECLYYLTIGCYKLGEYSMAKRYVDTLF  104 (144)
T ss_dssp             HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCS------THHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc------chhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            5788999999998764   46899999988653221      356788888999999999999999998864

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=90.00  E-value=0.81  Score=30.98  Aligned_cols=39  Identities=15%  Similarity=0.056  Sum_probs=31.4

Q ss_pred             ChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 024043          107 RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE  145 (273)
Q Consensus       107 ~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~  145 (273)
                      .+...|..+...++.+...|+|++||++.++|+.+..+.
T Consensus        10 spLn~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eA   48 (97)
T 2crb_A           10 GPLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEA   48 (97)
T ss_dssp             THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            345567788888888888899999999999998877643

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=88.74  E-value=1  Score=30.04  Aligned_cols=30  Identities=27%  Similarity=0.344  Sum_probs=21.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043          115 YKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (273)
Q Consensus       115 l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~  144 (273)
                      +..-|.-....|+|++|+.+|.+|++.+..
T Consensus        22 lv~~Ave~D~~g~y~eAl~lY~~aie~l~~   51 (83)
T 2w2u_A           22 YAINAVKADKEGNAEEAITNYKKAIEVLAQ   51 (83)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            333445556679999999999999988753

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.61  E-value=1.6  Score=39.54  Aligned_cols=142  Identities=9%  Similarity=0.107  Sum_probs=89.3

Q ss_pred             CHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc-CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 024043           68 SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI-GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE  145 (273)
Q Consensus        68 ~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~-g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~  145 (273)
                      |..+.+..++.+...|... .+++|..+..++.  +... ....+.++.+.-+|.++.-.++|.+|.+++..|+......
T Consensus       226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          226 DNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN  303 (523)
T ss_dssp             SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred             CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            4567888888888999877 8999999988885  4433 4556678999999999999999999999999999766543


Q ss_pred             CCc-ccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043          146 EVT-TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDI  222 (273)
Q Consensus       146 ~~~-~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~l  222 (273)
                      ... ...-.++..+-.+-.-+|++++ ...|.+-     .   .+. .-..|+.+..+ ...||.......++.+...
T Consensus       304 ~~a~gfr~~a~K~lI~V~LLlG~iP~-r~lf~q~-----~---l~~-~L~pY~~Lv~A-vr~GdL~~F~~~L~~h~~~  370 (523)
T 4b4t_S          304 SKSLGFLQQSNKLHCCIQLLMGDIPE-LSFFHQS-----N---MQK-SLLPYYHLTKA-VKLGDLKKFTSTITKYKQL  370 (523)
T ss_dssp             SSCSHHHHHHHHHHHHHHHHHTCCCC-HHHHTTT-----S---CHH-HHHHHHHHHHH-HHHTCHHHHHHHHHHTHHH
T ss_pred             hhhhhHHHHHHHHHHhHHhhcCCCCC-hHHhhch-----h---HHH-HHHHHHHHHHH-HHcCCHHHHHHHHHHhcce
Confidence            321 1222333333444444676543 1112110     0   000 00112222222 3568888887777776633

>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A

Probab=88.27  E-value=4.4  Score=35.90  Aligned_cols=98  Identities=14%  Similarity=0.052  Sum_probs=73.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC----------------HH-HHHHHHHHHHHHHhcc-CH
Q 024043           27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLES----------------KH-EAAQAYVDAAHCYKKT-SS   88 (273)
Q Consensus        27 ~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----------------~~-~aa~~~~~~~~~~~~~-~~   88 (273)
                      +..+--+.+..+.+..+...++|.+|+-|+...++++.=..+                .. ..-..|..+...+.++ .+
T Consensus        29 ~~~el~i~~l~~L~~~h~~~~ny~EAa~~l~lhA~l~~w~~~~~~~~~~~~~~~~~qt~~~~ke~L~~~~i~~f~kg~~~  108 (436)
T 2yin_A           29 NREEMYIRYLYKLRDLHLDCDNYTEAAYTLLLHTWLLKWSDEQCASQVMQTGQQHPQTHRQLKETLYETIIGYFDKGKMW  108 (436)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSCCC--------------CHHHHHHHHHHHHHHHHHHHTCH
T ss_pred             CChHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHhCCCccccCcccccCCCCccccHHHHHHHHHHHHHHHHHhcCcH
Confidence            566778888899999999999999999999766655421000                00 1112466667777666 88


Q ss_pred             HHHHHHHHHHHHHHHhc-CChhHHHHHHHHHHHHHHh
Q 024043           89 NEAISCLEQAVNMFCDI-GRLSMAARYYKEIAELYES  124 (273)
Q Consensus        89 ~eA~~~~~~Al~~~~~~-g~~~~~a~~l~~lg~~~~~  124 (273)
                      +.|+.+|+..+..|... -|+...+.++..++.+|..
T Consensus       109 E~ai~l~k~L~~~yE~~~~Dy~~Ls~~~~~~a~~y~~  145 (436)
T 2yin_A          109 EEAISLCKELAEQYEMEIFDYELLSQNLIQQAKFYES  145 (436)
T ss_dssp             HHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999875 8899999999999888875

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=87.94  E-value=1.4  Score=29.44  Aligned_cols=34  Identities=9%  Similarity=0.006  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (273)
Q Consensus       111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~  144 (273)
                      .|..+...|.-....|+|++|+.+|..|++++..
T Consensus        12 ~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~   45 (85)
T 2v6x_A           12 KGIELVQKAIDLDTATQYEEAYTAYYNGLDYLML   45 (85)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            3444444455556668999999999999888753

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=87.48  E-value=1.4  Score=29.40  Aligned_cols=29  Identities=21%  Similarity=0.430  Sum_probs=21.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043          116 KEIAELYESEHNIEQTIVFFEKAADMFQN  144 (273)
Q Consensus       116 ~~lg~~~~~~g~~~~A~~~y~~Al~~~~~  144 (273)
                      ..-|.-....|+|.+|+.+|.+|++.+..
T Consensus        15 v~~Ave~D~~g~y~eAl~lY~~aie~l~~   43 (83)
T 2v6y_A           15 AILAVKADKEGKVEDAITYYKKAIEVLSQ   43 (83)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            33345556669999999999999988754

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=87.46  E-value=1.4  Score=29.66  Aligned_cols=34  Identities=24%  Similarity=0.276  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (273)
Q Consensus       111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~  144 (273)
                      .|..+..-|.-....|+|++|+.+|..|++++-.
T Consensus        15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~   48 (86)
T 4a5x_A           15 AAATVLKRAVELDSESRYPQALVCYQEGIDLLLQ   48 (86)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            3444445555556679999999999999988764

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=87.01  E-value=0.92  Score=32.44  Aligned_cols=31  Identities=16%  Similarity=0.259  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (273)
Q Consensus       114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~  144 (273)
                      .+...|.-....|+|++|+.+|..|+++|..
T Consensus        20 ~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~   50 (117)
T 2cpt_A           20 DLASKAAQEDKAGNYEEALQLYQHAVQYFLH   50 (117)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            3334444445558899999999998888754

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=86.35  E-value=1.9  Score=29.35  Aligned_cols=33  Identities=21%  Similarity=0.269  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (273)
Q Consensus       112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~  144 (273)
                      |..+...|.-....|+|++|+.+|..|++++..
T Consensus        15 Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~   47 (93)
T 1wfd_A           15 AVAVLKRAVELDAESRYQQALVCYQEGIDMLLQ   47 (93)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            344444555556679999999999999998864

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=84.39  E-value=4.3  Score=40.57  Aligned_cols=100  Identities=11%  Similarity=0.102  Sum_probs=71.9

Q ss_pred             HHHHHHHhcc-CHHHHHHHHHHHHHHH-----------------HhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043           77 VDAAHCYKKT-SSNEAISCLEQAVNMF-----------------CDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKA  138 (273)
Q Consensus        77 ~~~~~~~~~~-~~~eA~~~~~~Al~~~-----------------~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~A  138 (273)
                      .-.|.++... ++++|.++|++|..-.                 ............|..+..+++..+.++.++++.+.|
T Consensus       846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA  925 (1139)
T 4fhn_B          846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA  925 (1139)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4567888766 9999999998873211                 111112223567889999999999999999999999


Q ss_pred             HHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 024043          139 ADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEE  177 (273)
Q Consensus       139 l~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~  177 (273)
                      ++..... +.......+.++=..+..+|+|++|...+..
T Consensus       926 i~~~~~~-~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~  963 (1139)
T 4fhn_B          926 DASKETD-DEDLSIAITHETLKTACAAGKFDAAHVALMV  963 (1139)
T ss_dssp             HHHCCSC-CHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred             HHhccCC-ChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence            9875433 2222334677777888999999999876643

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=80.73  E-value=27  Score=34.63  Aligned_cols=102  Identities=9%  Similarity=-0.034  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhh
Q 024043          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY  190 (273)
Q Consensus       111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~  190 (273)
                      .-.+++.+=..|.+.|+.++|...+.+-.++-.. |-... ..+|+.+-..+++.|+.++|.++|++.......     .
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~k-G~~Pd-vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~-----P  198 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQK-RKLLT-LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT-----P  198 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHH-HTTCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC-----C
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc-CCCCC-HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-----C
Confidence            3446777778888889999999999765544322 11122 357888889999999999999999988533221     1


Q ss_pred             chhhHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 024043          191 GVKGHLLNAGICQLCKGD-VVAITNALERYQ  220 (273)
Q Consensus       191 ~~~~~~~~~gl~~l~~gd-~~~A~~~~~~~~  220 (273)
                      .. ..|..+..++...|. .+.|.+.|++..
T Consensus       199 Dv-vTYntLI~glcK~G~~~e~A~~Ll~EM~  228 (1134)
T 3spa_A          199 DL-LSYAAALQCMGRQDQDAGTIERCLEQMS  228 (1134)
T ss_dssp             CH-HHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             cH-HHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            11 123334445555665 467788888754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	273
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	1e-42

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  145 bits (365), Expect = 1e-42
 Identities = 81/288 (28%), Positives = 144/288 (50%), Gaps = 26/288 (9%)

Query: 5   IARAEEFEKKAEKKLNGWGLFGS--------KYEDAADLFDKAANSFKLAKSWDKAGATY 56
           I+   E  K+AEKK      F          K+E+AADL  +AA  ++L K  + AG ++
Sbjct: 1   ISDPVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSF 60

Query: 57  VKLANCHLKLESKHEAAQAYVDAAHCYKKTSS-NEAISCLEQAVNMFCDIGRLSMAARYY 115
           +K A+   K  ++ EA   YV+A  C+K   +   A+  LE A+ +F   G+    A + 
Sbjct: 61  LKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFK 120

Query: 116 KEIAELYESE-HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEI 174
            E+ E+ E++ H+  + I  +E A + +  ++    +N+C  K A   A   QY ++ +I
Sbjct: 121 FELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180

Query: 175 YEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY--------------- 219
           Y ++ + S+ N L ++ +K + L  G+CQL   D VA    L+                 
Sbjct: 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNF 240

Query: 220 -QDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKE 266
            + +  +++E D  + ++  KEFD+   LD WK T+L ++KE ++ +E
Sbjct: 241 LKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESIQQQE 288

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	273
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	100.0
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.77
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.62
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.54
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.49
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.49
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.48
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.47
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.45
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.44
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.4
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.38
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.37
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.33
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.33
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.29
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.24
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.24
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.22
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.22
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.2
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.19
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.19
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.15
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.15
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.14
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.12
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.11
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.11
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.09
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.08
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.07
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.03
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.03
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.93
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.88
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.8
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.76
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.75
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.63
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.63
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.6
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.56
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.48
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.45
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.4
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.39
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.31
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.16
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.86
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.82
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.5
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.23
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.21
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.16
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	96.43
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	94.28
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	89.48
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	89.15
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	83.94
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	80.57
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	80.44

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-41  Score=289.33  Aligned_cols=262  Identities=32%  Similarity=0.532  Sum_probs=241.4

Q ss_pred             HhhHHHHHHHHHHhhc-ccc----CC---CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024043            5 IARAEEFEKKAEKKLN-GWG----LF---GSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAY   76 (273)
Q Consensus         5 ~~~a~~l~~~Aek~~k-~~~----~~---~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~   76 (273)
                      ++||++||++|||+++ +-+    ++   +++|++|+++|.++|++|+..++|++|+++|.+|++++.+.+++.+++.+|
T Consensus         1 ~~~~~~~l~~aek~~~~~~~~~~~~~~~~~~~~~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~   80 (290)
T d1qqea_           1 ISDPVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTY   80 (290)
T ss_dssp             CCCHHHHHHHHHHHSSCCCTHHHHHSCCSHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhcCcchhHHHHhcCCccccHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            3689999999999998 322    22   258999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhccCCcccHHHH
Q 024043           77 VDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES-EHNIEQTIVFFEKAADMFQNEEVTTSANQC  154 (273)
Q Consensus        77 ~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~-~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~  154 (273)
                      .++|.||... ++++|+++|+++++++...|++..++.++.++|.++.. .|++++|+++|++|+++++..+++.....+
T Consensus        81 ~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~  160 (290)
T d1qqea_          81 VEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKC  160 (290)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhH
Confidence            9999999888 99999999999999999999999999999999999965 599999999999999999999988888899


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH--------------
Q 024043          155 KQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ--------------  220 (273)
Q Consensus       155 ~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~--------------  220 (273)
                      +.++|.++..+|+|++|+++|++++...+..+..+++....+++++++++..||+..|..+++++.              
T Consensus       161 ~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~  240 (290)
T d1qqea_         161 FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNF  240 (290)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHH
T ss_pred             HHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHH
Confidence            999999999999999999999999877777666677788888999999999999999999988753              


Q ss_pred             --HHHHHHhhcCHhHHHHHHHhhhccCCCchhHHHHHHHHHHhccccc
Q 024043          221 --DIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKE  266 (273)
Q Consensus       221 --~ll~a~~~~d~~~~~~~~~~~~~~~~ld~~~~~~l~~~~~~~~~~~  266 (273)
                        +++.++..+|.+.|+++|..|+++.+||||++.+|.+||+.++..+
T Consensus       241 l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~~~~~~L~~~k~~le~~e  288 (290)
T d1qqea_         241 LKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESIQQQE  288 (290)
T ss_dssp             HHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhcccC
Confidence              6788999999999999999999999999999999999999998433

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=1.2e-16  Score=134.38  Aligned_cols=176  Identities=11%  Similarity=0.066  Sum_probs=151.9

Q ss_pred             HhhHHHHHHHHHHhhccccCC----------------CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 024043            5 IARAEEFEKKAEKKLNGWGLF----------------GSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLES   68 (273)
Q Consensus         5 ~~~a~~l~~~Aek~~k~~~~~----------------~~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~   68 (273)
                      .++|.+++.+|-..++..+-|                .++...++..|..+|.+|...|++++|+++|.++++++...++
T Consensus        33 ~~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~  112 (290)
T d1qqea_          33 FEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ  112 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhccc
Confidence            578888888888877621111                1344555556667788999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhc-c-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q 024043           69 KHEAAQAYVDAAHCYKK-T-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE  146 (273)
Q Consensus        69 ~~~aa~~~~~~~~~~~~-~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~  146 (273)
                      +..++.++.++|.+|.. . ++++|+++|++|++++...+++...+.++.++|.++..+|+|++|+.+|++++.+....+
T Consensus       113 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~  192 (290)
T d1qqea_         113 FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             chhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccch
Confidence            99999999999999854 4 999999999999999999999999999999999999999999999999999999988765


Q ss_pred             C-cccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 024043          147 V-TTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR  180 (273)
Q Consensus       147 ~-~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~  180 (273)
                      . .......+...+.++...|+++.|...++++..
T Consensus       193 ~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~  227 (290)
T d1qqea_         193 LSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS  227 (290)
T ss_dssp             TTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred             hhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            4 456667788999999999999999999999853

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=5.3e-14  Score=118.64  Aligned_cols=187  Identities=12%  Similarity=0.061  Sum_probs=136.4

Q ss_pred             HHHHHHHhhccccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024043           11 FEKKAEKKLNGWGLFGSKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAY   76 (273)
Q Consensus        11 l~~~Aek~~k~~~~~~~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~   76 (273)
                      .+.+|..+++     .|++++|..+|+++              |.++...|++++|+.+|.+++++...      -...+
T Consensus        22 ~~~~g~~~~~-----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~   90 (323)
T d1fcha_          22 PFEEGLRRLQ-----EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD------NQTAL   90 (323)
T ss_dssp             HHHHHHHHHH-----TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHH
T ss_pred             HHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc------ccccc
Confidence            3455555444     24777777777764              67888899999999999998876421      12455


Q ss_pred             HHHHHHHhcc-CHHHHHHHHHHHHHHHHhc---------------------------------------------CChhH
Q 024043           77 VDAAHCYKKT-SSNEAISCLEQAVNMFCDI---------------------------------------------GRLSM  110 (273)
Q Consensus        77 ~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~---------------------------------------------g~~~~  110 (273)
                      ..+|.+|... ++++|++++++++.+....                                             .....
T Consensus        91 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~  170 (323)
T d1fcha_          91 MALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSI  170 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSC
T ss_pred             ccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhccc
Confidence            6666666555 6666666666654322110                                             00011


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhh
Q 024043          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY  190 (273)
Q Consensus       111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~  190 (273)
                      .+.++..+|.++...|++++|+.+|++++.+.+.      ...++..+|.++..+|++++|+++|++++...+++     
T Consensus       171 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----  239 (323)
T d1fcha_         171 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN------DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY-----  239 (323)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred             ccccchhhHHHHHHHHHHhhhhcccccccccccc------cccchhhhhhcccccccchhHHHHHHHHHHHhhcc-----
Confidence            2456788999999999999999999999987543      24689999999999999999999999998654443     


Q ss_pred             chhhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 024043          191 GVKGHLLNAGICQLCKGDVVAITNALERYQD  221 (273)
Q Consensus       191 ~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~  221 (273)
                        ...++++|.++...|++..|...|++...
T Consensus       240 --~~a~~~lg~~~~~~g~~~~A~~~~~~al~  268 (323)
T d1fcha_         240 --IRSRYNLGISCINLGAHREAVEHFLEALN  268 (323)
T ss_dssp             --HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence              34678899999999999999999998764

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.1e-12  Score=111.42  Aligned_cols=245  Identities=13%  Similarity=0.105  Sum_probs=132.3

Q ss_pred             HhhHHHHHHHHHHhhcc----c---c--CC-CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHH
Q 024043            5 IARAEEFEKKAEKKLNG----W---G--LF-GSKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLA   60 (273)
Q Consensus         5 ~~~a~~l~~~Aek~~k~----~---~--~~-~~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~   60 (273)
                      .++|.+++.++-+.-..    +   +  .+ .++|++|...|.++              |.+|...|++++|+..+.++.
T Consensus        15 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~   94 (388)
T d1w3ba_          15 FEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHAL   94 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccccccccc
Confidence            56788888877665431    1   1  12 38999999988875              567888899999999888877


Q ss_pred             HHHHHcCC------------------------------------------------HH--------------HHHHHHHH
Q 024043           61 NCHLKLES------------------------------------------------KH--------------EAAQAYVD   78 (273)
Q Consensus        61 ~~~~~~~~------------------------------------------------~~--------------~aa~~~~~   78 (273)
                      ........                                                ..              ..+..+..
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (388)
T d1w3ba_          95 RLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN  174 (388)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHh
Confidence            64211000                                                00              01344555


Q ss_pred             HHHHHhcc-CHHHHHHHHHHHHHHHHh--------------cCChhHH--------------HHHHHHHHHHHHhcCCHH
Q 024043           79 AAHCYKKT-SSNEAISCLEQAVNMFCD--------------IGRLSMA--------------ARYYKEIAELYESEHNIE  129 (273)
Q Consensus        79 ~~~~~~~~-~~~eA~~~~~~Al~~~~~--------------~g~~~~~--------------a~~l~~lg~~~~~~g~~~  129 (273)
                      +|.++... ++++|+.++++++.+.+.              .|++..+              +..+..+|.++...|+++
T Consensus       175 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  254 (388)
T d1w3ba_         175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLID  254 (388)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             hcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHH
Confidence            66666555 777788888777664321              2222221              223444555555555555


Q ss_pred             HHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCH
Q 024043          130 QTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDV  209 (273)
Q Consensus       130 ~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~  209 (273)
                      +|+.+|++|+++.+..      ..++..+|.++...|++++|++.|+++....+..       ...+..++.++...|++
T Consensus       255 ~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~  321 (388)
T d1w3ba_         255 LAIDTYRRAIELQPHF------PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH-------ADSLNNLANIKREQGNI  321 (388)
T ss_dssp             HHHHHHHHHHHTCSSC------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHTTTCH
T ss_pred             HHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCcc-------chhhhHHHHHHHHCCCH
Confidence            5555555555543211      2345555555555555555555555554332221       12334455556666666


Q ss_pred             HHHHHHHHHHH-------HHH--HHHhhcCHhHHHHHHHhhhccCCCchhHHHHHHHHHHhc
Q 024043          210 VAITNALERYQ-------DIA--ASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKL  262 (273)
Q Consensus       210 ~~A~~~~~~~~-------~ll--~a~~~~d~~~~~~~~~~~~~~~~ld~~~~~~l~~~~~~~  262 (273)
                      ++|...+++..       ...  -+........+.+++..|.++..+||-....+..+...+
T Consensus       322 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~  383 (388)
T d1w3ba_         322 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL  383 (388)
T ss_dssp             HHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            66666655532       000  011112233455566666666666666555555555444

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.7e-13  Score=114.24  Aligned_cols=197  Identities=11%  Similarity=0.033  Sum_probs=146.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHH
Q 024043           34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAA  112 (273)
Q Consensus        34 ~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a  112 (273)
                      ..|.+ |..+...|++++|+.+|+++++....      -+.++..+|.++... ++++|+.+|.+|+++.+..      .
T Consensus        21 ~~~~~-g~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~   87 (323)
T d1fcha_          21 QPFEE-GLRRLQEGDLPNAVLLFEAAVQQDPK------HMEAWQYLGTTQAENEQELLAISALRRCLELKPDN------Q   87 (323)
T ss_dssp             SHHHH-HHHHHHTTCHHHHHHHHHHHHHSCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------H
T ss_pred             HHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccc------c
Confidence            34544 88888999999999999999876432      256788999999887 9999999999999885432      4


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC---------------------------------------------C
Q 024043          113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE---------------------------------------------V  147 (273)
Q Consensus       113 ~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~---------------------------------------------~  147 (273)
                      ..+..+|.++...|++++|++.+++++.+.+...                                             .
T Consensus        88 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p  167 (323)
T d1fcha_          88 TALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDP  167 (323)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred             cccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhh
Confidence            6899999999999999999999998876543210                                             0


Q ss_pred             cccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----
Q 024043          148 TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDI-----  222 (273)
Q Consensus       148 ~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~l-----  222 (273)
                      ....+.++..+|.++...|++++|+.+|++++...+.+       ...+..+|.++...|++.+|.+++++...+     
T Consensus       168 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  240 (323)
T d1fcha_         168 TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND-------YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI  240 (323)
T ss_dssp             TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cccccccchhhHHHHHHHHHHhhhhccccccccccccc-------ccchhhhhhcccccccchhHHHHHHHHHHHhhccH
Confidence            01113567788999999999999999999998655443       346788999999999999999999986511     


Q ss_pred             ---H-HHHhhcCHhHHHHHHHhhhccCCCchh
Q 024043          223 ---A-ASMDEEDIAKFTDVVKEFDSMTPLDPW  250 (273)
Q Consensus       223 ---l-~a~~~~d~~~~~~~~~~~~~~~~ld~~  250 (273)
                         . -+........+.+++..|.....++|-
T Consensus       241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  272 (323)
T d1fcha_         241 RSRYNLGISCINLGAHREAVEHFLEALNMQRK  272 (323)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence               0 011112233456666666665555553

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=8.7e-13  Score=112.13  Aligned_cols=169  Identities=15%  Similarity=0.146  Sum_probs=134.8

Q ss_pred             CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHH
Q 024043           27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA   91 (273)
Q Consensus        27 ~~~~~A~~~~~~a--------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA   91 (273)
                      +++++|...+.++              |.++...|++++|+..|.++......      .+..+..+|.++... ++++|
T Consensus       183 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A  256 (388)
T d1w3ba_         183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN------HAVVHGNLACVYYEQGLIDLA  256 (388)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHH
T ss_pred             CcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh------HHHHHHHHHHHHHHCCCHHHH
Confidence            6777777766654              55677778888888888877665321      245677889998777 99999


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHH
Q 024043           92 ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS  171 (273)
Q Consensus        92 ~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A  171 (273)
                      +.+|++++++.+..      ..++..+|.++...|++++|+..|++++...+.      ...++..+|.++...|+|++|
T Consensus       257 ~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A  324 (388)
T d1w3ba_         257 IDTYRRAIELQPHF------PDAYCNLANALKEKGSVAEAEDCYNTALRLCPT------HADSLNNLANIKREQGNIEEA  324 (388)
T ss_dssp             HHHHHHHHHTCSSC------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCc------cchhhhHHHHHHHHCCCHHHH
Confidence            99999999875432      458899999999999999999999999887543      246788999999999999999


Q ss_pred             HHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          172 IEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      +++|++++...+++       ...++++|.++...|++.+|...+++..
T Consensus       325 ~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al  366 (388)
T d1w3ba_         325 VRLYRKALEVFPEF-------AAAHSNLASVLQQQGKLQEALMHYKEAI  366 (388)
T ss_dssp             HHHHHHHTTSCTTC-------HHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999997544332       3467889999999999999999998863

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.48  E-value=3.1e-12  Score=97.17  Aligned_cols=127  Identities=16%  Similarity=0.128  Sum_probs=104.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCCh----
Q 024043           40 ANSFKLAKSWDKAGATYVKLANCHLKLES------KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL----  108 (273)
Q Consensus        40 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~----  108 (273)
                      |+.+...|+|++|+..|.+|+++.+..++      ....+.+|.++|.+|... ++++|+.++++++.++.+.+..    
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence            77888889999999999999999987664      445688999999999888 9999999999999999876553    


Q ss_pred             -hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCc-ccHHHHHHHHHHHHHHhc
Q 024043          109 -SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT-TSANQCKQKVAQYAAELE  166 (273)
Q Consensus       109 -~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~-~~~~~~~~~~a~~~~~~g  166 (273)
                       ...+.++.++|.+|..+|++++|+++|++|++++++.... ......+..++.-+..+|
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~~~~~~~~~~~~~~l~~lg  155 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQLG  155 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchHHHHHHHHHHHHHHHHHcC
Confidence             3456789999999999999999999999999999977553 444445555555554443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.4e-13  Score=107.23  Aligned_cols=137  Identities=16%  Similarity=0.177  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCC
Q 024043           29 YEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR  107 (273)
Q Consensus        29 ~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~  107 (273)
                      +-+|+.+|++ |..+...|+|++|++.|.++       .++.  +.++.++|.+|... ++++|+++|++|+++.+..  
T Consensus         2 ~~~~~~l~~~-g~~~~~~~d~~~Al~~~~~i-------~~~~--~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~--   69 (192)
T d1hh8a_           2 LVEAISLWNE-GVLAADKKDWKGALDAFSAV-------QDPH--SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL--   69 (192)
T ss_dssp             HHHHHHHHHH-HHHHHHTTCHHHHHHHHHTS-------SSCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--
T ss_pred             HHHHHHHHHH-HHHHHHCCCHHHHHHHHHhc-------CCCC--HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhh--
Confidence            4578899988 99999999999999988753       2221  35788999999888 9999999999999985433  


Q ss_pred             hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC----------cccHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 024043          108 LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV----------TTSANQCKQKVAQYAAELEQYHKSIEIYEE  177 (273)
Q Consensus       108 ~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~----------~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~  177 (273)
                          +.++.++|.++..+|++++|+..|++|+...+....          ......++.++|.++..+|++++|++.|++
T Consensus        70 ----~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~  145 (192)
T d1hh8a_          70 ----AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL  145 (192)
T ss_dssp             ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ----hhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence                569999999999999999999999999987654321          234568899999999999999999999999


Q ss_pred             HHHH
Q 024043          178 IARQ  181 (273)
Q Consensus       178 ~~~~  181 (273)
                      ++..
T Consensus       146 A~~~  149 (192)
T d1hh8a_         146 ATSM  149 (192)
T ss_dssp             HHTT
T ss_pred             HHhc
Confidence            8643

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=1.2e-10  Score=97.36  Aligned_cols=145  Identities=9%  Similarity=0.026  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCC--hhHH
Q 024043           35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR--LSMA  111 (273)
Q Consensus        35 ~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~--~~~~  111 (273)
                      .+...|.+|...|++++|+..|.++..+....++....+..+..++.++... ++..|+..+.+++.+....+.  ....
T Consensus        53 a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~  132 (366)
T d1hz4a_          53 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH  132 (366)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHH
Confidence            4444578999999999999999999999999999999999999999999887 999999999999999987654  4556


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 024043          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR  180 (273)
Q Consensus       112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~  180 (273)
                      +.++..+|.++...|+++.+..++.+++...+..+.... ..++...+.++...+.+.++...+.++..
T Consensus       133 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~a~~  200 (366)
T d1hz4a_         133 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ-LQCLAMLIQCSLARGDLDNARSQLNRLEN  200 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG-HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            778889999999999999999999999999987766443 46788889999999999999998888753

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=5e-11  Score=99.66  Aligned_cols=183  Identities=11%  Similarity=-0.050  Sum_probs=149.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHH
Q 024043           35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAAR  113 (273)
Q Consensus        35 ~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~  113 (273)
                      +..--+.++...|++++|+..|.++++.... +++...+.++..+|.+|... ++++|+.+|++++.+....++....+.
T Consensus        14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~-~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   92 (366)
T d1hz4a_          14 FNALRAQVAINDGNPDEAERLAKLALEELPP-GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW   92 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC-CCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence            3444578889999999999999999987643 45556677899999999877 999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhc
Q 024043          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV--TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG  191 (273)
Q Consensus       114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~--~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~  191 (273)
                      ++.+++.++...|++..|...+.+++.+......  ......++..+|.++...|+++.|...++++.........  ..
T Consensus        93 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~  170 (366)
T d1hz4a_          93 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP--QQ  170 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG--GG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhh--hh
Confidence            9999999999999999999999999999987643  2445567888999999999999999999999755433321  22


Q ss_pred             hhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          192 VKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       192 ~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      ....+...+.++...|++..+...+.+..
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~  199 (366)
T d1hz4a_         171 QLQCLAMLIQCSLARGDLDNARSQLNRLE  199 (366)
T ss_dssp             GHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            23345566777888888888877776644

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.40  E-value=9.3e-12  Score=94.48  Aligned_cols=114  Identities=12%  Similarity=0.068  Sum_probs=92.4

Q ss_pred             HHHHHHHH--HHHHhcc-CHHHHHHHHHHHHHHHHhcCC------hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 024043           72 AAQAYVDA--AHCYKKT-SSNEAISCLEQAVNMFCDIGR------LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMF  142 (273)
Q Consensus        72 aa~~~~~~--~~~~~~~-~~~eA~~~~~~Al~~~~~~g~------~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~  142 (273)
                      .+.++..+  |..+... +|++|+..|++|+++.+..++      ....+.++.++|.+|..+|++++|+..|++|+.++
T Consensus         6 ~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~   85 (156)
T d2hr2a1           6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF   85 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcc
Confidence            34455555  5555444 999999999999999998765      33468899999999999999999999999999999


Q ss_pred             hccCCc-----ccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          143 QNEEVT-----TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       143 ~~~~~~-----~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                      +.....     .....++.++|.+|..+|++++|++.|++++...+..
T Consensus        86 ~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          86 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             cccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            865432     2334678999999999999999999999998655443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.5e-12  Score=108.99  Aligned_cols=151  Identities=9%  Similarity=0.040  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHHhcCChhH
Q 024043           33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT--SSNEAISCLEQAVNMFCDIGRLSM  110 (273)
Q Consensus        33 ~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~--~~~eA~~~~~~Al~~~~~~g~~~~  110 (273)
                      .+.|...|.++...+.+++|+.++.+|+++..      .-..++...|.++...  ++++|+.++++++.+.++.     
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP------~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~-----  111 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNA------ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN-----  111 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC-----
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCC------CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhh-----
Confidence            44555668899999999999999999999842      2246788899998775  7999999999999987655     


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhh
Q 024043          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY  190 (273)
Q Consensus       111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~  190 (273)
                       ..++.++|.++..+|++++|+.++.+|+++.+..      ..++..+|.++..+|++++|++.|++++...+.+.    
T Consensus       112 -~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n------~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~----  180 (315)
T d2h6fa1         112 -YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN------YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNN----  180 (315)
T ss_dssp             -HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH----
T ss_pred             -hhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcc------hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccH----
Confidence             4599999999999999999999999999985432      47899999999999999999999999987665542    


Q ss_pred             chhhHHHHHHHHHHhcCC
Q 024043          191 GVKGHLLNAGICQLCKGD  208 (273)
Q Consensus       191 ~~~~~~~~~gl~~l~~gd  208 (273)
                         ..+.+.|.++...+.
T Consensus       181 ---~a~~~r~~~l~~~~~  195 (315)
T d2h6fa1         181 ---SVWNQRYFVISNTTG  195 (315)
T ss_dssp             ---HHHHHHHHHHHHTTC
T ss_pred             ---HHHHHHHHHHHHccc
Confidence               245666666555443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.7e-11  Score=96.33  Aligned_cols=155  Identities=14%  Similarity=0.075  Sum_probs=115.3

Q ss_pred             HHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHH
Q 024043           78 DAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQ  156 (273)
Q Consensus        78 ~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~  156 (273)
                      +-|.++... ++++|+++|.++       .++.  +.++.++|.+|..+|++++|+.+|++|+++.+.      -+.++.
T Consensus        10 ~~g~~~~~~~d~~~Al~~~~~i-------~~~~--~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~------~~~a~~   74 (192)
T d1hh8a_          10 NEGVLAADKKDWKGALDAFSAV-------QDPH--SRICFNIGCMYTILKNMTEAEKAFTRSINRDKH------LAVAYF   74 (192)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTS-------SSCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHhc-------CCCC--HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh------hhhhHH
Confidence            346666555 899998888753       2322  468999999999999999999999999998532      257899


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHhccchh---------hhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Q 024043          157 KVAQYAAELEQYHKSIEIYEEIARQSLNNNLL---------KYGVKGHLLNAGICQLCKGDVVAITNALERYQDIAASMD  227 (273)
Q Consensus       157 ~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~a~~  227 (273)
                      ++|.++.++|+|++|++.|++++....+++..         .....+.++++|+++...|++..|.+.++....+   -.
T Consensus        75 ~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~---~~  151 (192)
T d1hh8a_          75 QRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM---KS  151 (192)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CC
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CC
Confidence            99999999999999999999997543322110         1123467889999999999999999988775321   12


Q ss_pred             hcCHhHHHHHHHhhhccCCCchh
Q 024043          228 EEDIAKFTDVVKEFDSMTPLDPW  250 (273)
Q Consensus       228 ~~d~~~~~~~~~~~~~~~~ld~~  250 (273)
                      ..+...+..++..+.....++|.
T Consensus       152 ~~~~~~~~~Al~~~~~~~~~~~~  174 (192)
T d1hh8a_         152 EPRHSKIDKAMECVWKQKLYEPV  174 (192)
T ss_dssp             SGGGGHHHHHHHHHHTTCCCCCC
T ss_pred             CcchHHHHHHHHHHHhhhhCCcc
Confidence            23445677777777776666664

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=4e-11  Score=97.36  Aligned_cols=101  Identities=5%  Similarity=-0.119  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhH
Q 024043           32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM  110 (273)
Q Consensus        32 A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~  110 (273)
                      -+..|...|.+|...|++++|+.+|.+++.+...  +    +.++.++|.+|... ++++|+.+|++++.+.+...    
T Consensus        36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~--~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----  105 (259)
T d1xnfa_          36 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPD--M----PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN----  105 (259)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT----
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC--C----HHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhh----
Confidence            3445556699999999999999999999988422  2    46789999999888 99999999999999876543    


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (273)
Q Consensus       111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~  144 (273)
                        .++.++|.++..+|++++|+..|++++++...
T Consensus       106 --~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  137 (259)
T d1xnfa_         106 --YAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN  137 (259)
T ss_dssp             --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             --hhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc
Confidence              48999999999999999999999999988653

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.7e-11  Score=103.73  Aligned_cols=211  Identities=8%  Similarity=0.013  Sum_probs=150.3

Q ss_pred             CCHHHHHHHHHHH--------------HHHHHHcC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHH
Q 024043           27 SKYEDAADLFDKA--------------ANSFKLAK-SWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNE   90 (273)
Q Consensus        27 ~~~~~A~~~~~~a--------------~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~e   90 (273)
                      +.+++|..+|.+|              |.++...| ++++|+.++.+++++..+.      ..++...|.++... ++++
T Consensus        57 e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~------~~a~~~~~~~~~~l~~~~e  130 (315)
T d2h6fa1          57 ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN------YQVWHHRRVLVEWLRDPSQ  130 (315)
T ss_dssp             CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCCTT
T ss_pred             CchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhh------hhHHHHHhHHHHhhccHHH
Confidence            4566777777665              56677765 5999999999999885432      46888899999877 9999


Q ss_pred             HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcC---
Q 024043           91 AISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQ---  167 (273)
Q Consensus        91 A~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~---  167 (273)
                      |++++.+++.+....      ..++.++|.++...|++++|+.+|++|+++-...      ..++.++|.++..++.   
T Consensus       131 Al~~~~kal~~dp~n------~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n------~~a~~~r~~~l~~~~~~~~  198 (315)
T d2h6fa1         131 ELEFIADILNQDAKN------YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN------NSVWNQRYFVISNTTGYND  198 (315)
T ss_dssp             HHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCSCS
T ss_pred             HHHHHhhhhhhhhcc------hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCcc------HHHHHHHHHHHHHccccch
Confidence            999999999986654      4599999999999999999999999999985322      3578899999887765   


Q ss_pred             ---HHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH-------------HHHHHHh----
Q 024043          168 ---YHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ-------------DIAASMD----  227 (273)
Q Consensus       168 ---y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~-------------~ll~a~~----  227 (273)
                         +++|++.+.+++...+++.       ..++.++.++...| ...+...++.+.             .+.+.+.    
T Consensus       199 ~~~~~~ai~~~~~al~~~P~~~-------~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~  270 (315)
T d2h6fa1         199 RAVLEREVQYTLEMIKLVPHNE-------SAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLE  270 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCH-------HHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHhHHHHHHHHHhCCCch-------HHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHh
Confidence               6899999999987766652       23455555543333 445555555443             1111111    


Q ss_pred             ---hcCHhHHHHHHHhhhc-cCCCchhHHHHHHHHHHhcc
Q 024043          228 ---EEDIAKFTDVVKEFDS-MTPLDPWKTTLLLRVKEKLK  263 (273)
Q Consensus       228 ---~~d~~~~~~~~~~~~~-~~~ld~~~~~~l~~~~~~~~  263 (273)
                         ....+.+..++.-+.. ...+||.....+.-+.+.|+
T Consensus       271 ~~~~~~~~~~~ka~~l~~~l~~~~DpiR~~yw~~~~~~l~  310 (315)
T d2h6fa1         271 NQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ  310 (315)
T ss_dssp             TTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence               1123446666665554 34688877777777766664

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.5e-11  Score=90.22  Aligned_cols=103  Identities=14%  Similarity=0.139  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC-cc
Q 024043           72 AAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV-TT  149 (273)
Q Consensus        72 aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~-~~  149 (273)
                      .|..+.++|+++... +|++|+.+|.+|+++.+..      +.++.++|.+|..+|++++|++.|++|+++.+.... ..
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~   76 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR   76 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------HHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHH
Confidence            356677889888776 9999999999999885432      458999999999999999999999999999887655 35


Q ss_pred             cHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 024043          150 SANQCKQKVAQYAAELEQYHKSIEIYEEIAR  180 (273)
Q Consensus       150 ~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~  180 (273)
                      ..+.++..+|.++..++++++|+++|++++.
T Consensus        77 ~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence            5678899999999999999999999999864

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=2.5e-10  Score=92.47  Aligned_cols=106  Identities=11%  Similarity=0.049  Sum_probs=92.0

Q ss_pred             CHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q 024043           68 SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE  146 (273)
Q Consensus        68 ~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~  146 (273)
                      .....+.++.++|.+|... ++++|+++|++|+.+.+..      +.++.++|.++..+|++++|+.+|++|+++.+.. 
T Consensus        32 ~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-  104 (259)
T d1xnfa_          32 TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM------PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-  104 (259)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC------HHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhh-
Confidence            4566788999999999888 9999999999999985433      5689999999999999999999999999986543 


Q ss_pred             CcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          147 VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       147 ~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                           ..++.++|.++..+|++++|++.|++++...+.+
T Consensus       105 -----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  138 (259)
T d1xnfa_         105 -----NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND  138 (259)
T ss_dssp             -----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             -----hhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccc
Confidence                 3578999999999999999999999998765544

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=9.5e-11  Score=88.88  Aligned_cols=103  Identities=17%  Similarity=0.165  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcc
Q 024043           71 EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT  149 (273)
Q Consensus        71 ~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~  149 (273)
                      ..|..+...|+.|... +|++|+.+|++++.+.+..      +.++.++|.++..+|++++|+.+|++|+++...     
T Consensus         8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-----   76 (159)
T d1a17a_           8 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN------AIYYGNRSLAYLRTECYGYALGDATRAIELDKK-----   76 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhh------hhhhhhhHHHHHhccccchHHHHHHHHHHHccc-----
Confidence            3455666677777555 8899999999988875543      568889999999999999999999999988532     


Q ss_pred             cHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          150 SANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       150 ~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                       ...++..+|.++..+|+|++|+..|++++...+.+
T Consensus        77 -~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~  111 (159)
T d1a17a_          77 -YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD  111 (159)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             -chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence             23678889999999999999999999987665554

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=3.1e-10  Score=87.12  Aligned_cols=68  Identities=10%  Similarity=0.062  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccc
Q 024043          113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNN  186 (273)
Q Consensus       113 ~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~  186 (273)
                      .++.++|.+|..+|++++|+.++++|+++.+.      ...++..+|.++..+|+|++|+..|++++...++++
T Consensus        63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~  130 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSN------NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK  130 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH
T ss_pred             HHHHHHHHHHHhhhhcccccchhhhhhhcccc------chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH
Confidence            46778999999999999999999999988432      246789999999999999999999999987666553

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2e-10  Score=84.01  Aligned_cols=104  Identities=13%  Similarity=0.063  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhh
Q 024043          110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLK  189 (273)
Q Consensus       110 ~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~  189 (273)
                      ..|..+.++|..+...|+|++|+.+|.+|+++.+.      ...++.++|.+|..+|+|++|+..|++++...+..+...
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~   75 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPT------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY   75 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHH
Confidence            35678889999999999999999999999998542      246899999999999999999999999987766665444


Q ss_pred             hchhhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043          190 YGVKGHLLNAGICQLCKGDVVAITNALERY  219 (273)
Q Consensus       190 ~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~  219 (273)
                      ......+.++|.++...+++..|...+++.
T Consensus        76 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~ka  105 (128)
T d1elra_          76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKS  105 (128)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            455667888999999999999999988876

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2.5e-10  Score=87.71  Aligned_cols=128  Identities=13%  Similarity=0.147  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHH
Q 024043           32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLES---------KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNM  101 (273)
Q Consensus        32 A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~  101 (273)
                      .+..+..-|+.+...|+|++|+.+|.+|+.+......         ..-...+|.++|.||.+. ++++|+.++++|+.+
T Consensus        12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence            4556666788888999999999999999988654332         223456788999999888 999999999999998


Q ss_pred             HHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHH
Q 024043          102 FCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS  171 (273)
Q Consensus       102 ~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A  171 (273)
                      .+..      ..++..+|.++..+|++++|+.+|++|+++.+..      ..+...++.+....+++.+.
T Consensus        92 ~p~~------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n------~~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1          92 DSNN------EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN------KAAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             CTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC------HHHHHHHHHHHHHHHHHHHH
T ss_pred             cccc------hhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHH
Confidence            5432      5689999999999999999999999999986532      34566777777666655543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=6.7e-11  Score=92.44  Aligned_cols=96  Identities=18%  Similarity=0.178  Sum_probs=52.4

Q ss_pred             HHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHH
Q 024043           75 AYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ  153 (273)
Q Consensus        75 ~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~  153 (273)
                      .+.+.|+.+... ++++|+.+|++|+.+.+..      +.++.++|.+|...|++++|+.+|++|+++.+.      -..
T Consensus         6 ~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~------~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~------~~~   73 (201)
T d2c2la1           6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLV------AVYYTNRALCYLKMQQPEQALADCRRALELDGQ------SVK   73 (201)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT------CHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC------cHH
Confidence            344555555444 5566666666655553322      345666666666666666666666666555321      123


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 024043          154 CKQKVAQYAAELEQYHKSIEIYEEIARQS  182 (273)
Q Consensus       154 ~~~~~a~~~~~~g~y~~A~~~~~~~~~~~  182 (273)
                      ++.++|.++..+|+|++|+..|++++...
T Consensus        74 a~~~lg~~~~~l~~~~~A~~~~~~al~l~  102 (201)
T d2c2la1          74 AHFFLGQCQLEMESYDEAIANLQRAYSLA  102 (201)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            45566666666666666666666655433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.19  E-value=3.5e-10  Score=86.62  Aligned_cols=126  Identities=14%  Similarity=0.156  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHH
Q 024043           32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLE---------SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNM  101 (273)
Q Consensus        32 A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~  101 (273)
                      .++.+...|+.+...|+|.+|+.+|.+|+.+.....         .....+.+|.++|.||... ++++|+.++++++.+
T Consensus        14 ~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l   93 (168)
T d1kt1a1          14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL   93 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc
Confidence            455666778888888999999999999888764221         1223456677888888777 888888888888877


Q ss_pred             HHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHH
Q 024043          102 FCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYH  169 (273)
Q Consensus       102 ~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~  169 (273)
                      .+..      ..++.++|.++..+|++++|+.+|++|+.+.+..      ..+...++.+....+.+.
T Consensus        94 ~p~~------~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n------~~~~~~l~~~~~~~~~~~  149 (168)
T d1kt1a1          94 DSAN------EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN------KAARLQIFMCQKKAKEHN  149 (168)
T ss_dssp             CTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC------HHHHHHHHHHHHHHHHHH
T ss_pred             ccch------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHhHH
Confidence            4432      4578888888888888888888888888775432      245666666666665554

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=7.9e-11  Score=84.83  Aligned_cols=100  Identities=14%  Similarity=0.170  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHH
Q 024043           74 QAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSAN  152 (273)
Q Consensus        74 ~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~  152 (273)
                      .-+.+-|+.+... ++++|+.+|++++.+.+..      +.++.++|.+|..+|++++|+..|.+|+.+.+..      .
T Consensus         4 ~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~   71 (117)
T d1elwa_           4 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHN------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW------G   71 (117)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------H
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc------hhhhhcccccccccccccccchhhhhHHHhccch------h
Confidence            3455667766555 8999999999998875443      4589999999999999999999999999886432      3


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          153 QCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       153 ~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                      .++.++|.++..+|+|++|+..|++++...+.+
T Consensus        72 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~  104 (117)
T d1elwa_          72 KGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN  104 (117)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred             hHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence            578999999999999999999999998655554

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=3.6e-10  Score=85.57  Aligned_cols=130  Identities=16%  Similarity=0.169  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCC
Q 024043           29 YEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR  107 (273)
Q Consensus        29 ~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~  107 (273)
                      .+.|-.+. .-|+.|...|+|++|+.+|.+++.+...      -+.++.++|.||... ++++|+.+|++|+++....  
T Consensus         7 l~~a~~l~-~~gn~~~~~~~y~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~--   77 (159)
T d1a17a_           7 LKRAEELK-TQANDYFKAKDYENAIKFYSQAIELNPS------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY--   77 (159)
T ss_dssp             HHHHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--
T ss_pred             HHHHHHHH-HHHHHHHHcCCHHHHHHHhhhccccchh------hhhhhhhhHHHHHhccccchHHHHHHHHHHHcccc--
Confidence            34444444 5588899999999999999999988532      357889999999888 9999999999999986543  


Q ss_pred             hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHH--HHHhcCHHHHHHHHHH
Q 024043          108 LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQY--AAELEQYHKSIEIYEE  177 (273)
Q Consensus       108 ~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~--~~~~g~y~~A~~~~~~  177 (273)
                          ..++.++|.++..+|++++|+.+|++++.+.....      .++..++.+  ....+.+++|+...+.
T Consensus        78 ----~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~------~~~~~l~~~~~~~~~~~~~~a~~~~~~  139 (159)
T d1a17a_          78 ----IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK------DAKMKYQECNKIVKQKAFERAIAGDEH  139 (159)
T ss_dssp             ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence                35899999999999999999999999999865332      334444444  3344567777765433

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.14  E-value=5e-10  Score=84.43  Aligned_cols=120  Identities=13%  Similarity=0.088  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCChhHH
Q 024043           32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMA  111 (273)
Q Consensus        32 A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~eA~~~~~~Al~~~~~~g~~~~~  111 (273)
                      .+.-+..-|+.+...|+|.+|+.+|.+|+.+.......                  .+.........           ..
T Consensus        16 ~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~------------------~~~~~~~~~~~-----------~~   66 (153)
T d2fbna1          16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW------------------DDQILLDKKKN-----------IE   66 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTC------------------CCHHHHHHHHH-----------HH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhh------------------hhHHHHHhhhh-----------HH
Confidence            33445556777777777777777777776554222211                  11111111111           12


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccc
Q 024043          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNN  186 (273)
Q Consensus       112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~  186 (273)
                      ..++.++|.+|..+|++++|+++|++|+++.+.     . ..++.++|.++..+|+|++|+..|++++...+++.
T Consensus        67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-----~-~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  135 (153)
T d2fbna1          67 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-----N-VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL  135 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----C-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHhhHHHHHHHhcccchhhhhhhccccccch-----h-hhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            347889999999999999999999999988532     2 47899999999999999999999999987776653

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.12  E-value=2e-09  Score=82.27  Aligned_cols=109  Identities=12%  Similarity=0.079  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCC---------hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 024043           71 EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR---------LSMAARYYKEIAELYESEHNIEQTIVFFEKAAD  140 (273)
Q Consensus        71 ~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~---------~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~  140 (273)
                      ..+..+.+.|+.+... ++.+|+.+|.+|+.+....-.         ....+.++.++|.+|..+|++++|+.++++|+.
T Consensus        13 ~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~   92 (168)
T d1kt1a1          13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG   92 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhh
Confidence            4566777888888766 999999999999987744322         223466788999999999999999999999998


Q ss_pred             HHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          141 MFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                      +.+.      -..++.++|.++..+|+|++|++.|++++...+++
T Consensus        93 l~p~------~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n  131 (168)
T d1kt1a1          93 LDSA------NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN  131 (168)
T ss_dssp             HCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC
T ss_pred             cccc------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            8432      24789999999999999999999999998655554

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.11  E-value=5.5e-10  Score=85.47  Aligned_cols=33  Identities=18%  Similarity=0.326  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 024043           32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHL   64 (273)
Q Consensus        32 A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~   64 (273)
                      .++.+...|+.+...|+|.+|++.|.+++.+..
T Consensus        26 ~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~   58 (169)
T d1ihga1          26 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVE   58 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Confidence            344556668888888889988888888887653

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=2.1e-10  Score=82.57  Aligned_cols=111  Identities=17%  Similarity=0.132  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhH
Q 024043           32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM  110 (273)
Q Consensus        32 A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~  110 (273)
                      +-++. .-|+.+...|+|++|+.+|.+++.....      -+.++.++|.+|... ++++|+.+|.+++.+.+..     
T Consensus         3 ~~~l~-~~g~~~~~~g~~~eAi~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----   70 (117)
T d1elwa_           3 VNELK-EKGNKALSVGNIDDALQCYSEAIKLDPH------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-----   70 (117)
T ss_dssp             HHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----
T ss_pred             HHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCc------chhhhhcccccccccccccccchhhhhHHHhccch-----
Confidence            44444 4589999999999999999999987422      246899999999888 9999999999999886543     


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHH
Q 024043          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQY  161 (273)
Q Consensus       111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~  161 (273)
                       ..++.++|.++..+|++++|+.+|++|+++.+..      ..++..++.+
T Consensus        71 -~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~l~~l  114 (117)
T d1elwa_          71 -GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN------PQLKEGLQNM  114 (117)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC------HHHHHHHHHH
T ss_pred             -hhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHH
Confidence             3489999999999999999999999999886543      2445555544

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.09  E-value=3e-10  Score=88.57  Aligned_cols=100  Identities=14%  Similarity=0.221  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHH
Q 024043           36 FDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARY  114 (273)
Q Consensus        36 ~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~  114 (273)
                      +...|+.|...|+|++|+..|.+|+++...      -+.++.++|.||... ++++|+.+|++|+.+.+..      +.+
T Consensus         7 l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~------~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~------~~a   74 (201)
T d2c2la1           7 LKEQGNRLFVGRKYPEAAACYGRAITRNPL------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQS------VKA   74 (201)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC------HHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCc------HHH
Confidence            446699999999999999999999988432      257899999999888 9999999999999874432      458


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC
Q 024043          115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEV  147 (273)
Q Consensus       115 l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~  147 (273)
                      +.++|.+|..+|++++|+.+|++|+++.+....
T Consensus        75 ~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~~  107 (201)
T d2c2la1          75 HFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL  107 (201)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH
Confidence            999999999999999999999999999876543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.08  E-value=4.6e-10  Score=84.63  Aligned_cols=133  Identities=14%  Similarity=0.158  Sum_probs=97.0

Q ss_pred             HhhHHHHHHHHHHhhccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 024043            5 IARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGA-TYVKLANCHLKLESKHEAAQAYVDAAHCY   83 (273)
Q Consensus         5 ~~~a~~l~~~Aek~~k~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~A~~-~~~~a~~~~~~~~~~~~aa~~~~~~~~~~   83 (273)
                      +.+|..+-.++.++++     .++|.+|+..|.++..++.....+..... .....           ....++.++|.||
T Consensus        14 ~~~a~~~~~~G~~~f~-----~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~Nla~~~   77 (153)
T d2fbna1          14 VQSAFDIKEEGNEFFK-----KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKN-----------IEISCNLNLATCY   77 (153)
T ss_dssp             HHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHH-----------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhh-----------HHHHHHhhHHHHH
Confidence            5566666666666555     36999999999999877655544332221 11111           2345788999999


Q ss_pred             hcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHH
Q 024043           84 KKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYA  162 (273)
Q Consensus        84 ~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~  162 (273)
                      .+. ++++|+++|++|+++.+..      .+++.++|.++..+|++++|+.+|++|+++.+..      ..+...++.+.
T Consensus        78 ~~l~~~~~Al~~~~~al~~~p~~------~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n------~~~~~~l~~~~  145 (153)
T d2fbna1          78 NKNKDYPKAIDHASKVLKIDKNN------VKALYKLGVANMYFGFLEEAKENLYKAASLNPNN------LDIRNSYELCV  145 (153)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHH
T ss_pred             HHhcccchhhhhhhccccccchh------hhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHH
Confidence            888 9999999999999885433      4699999999999999999999999999997533      23455555555


Q ss_pred             HHh
Q 024043          163 AEL  165 (273)
Q Consensus       163 ~~~  165 (273)
                      .++
T Consensus       146 ~kl  148 (153)
T d2fbna1         146 NKL  148 (153)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.07  E-value=2.2e-09  Score=81.98  Aligned_cols=107  Identities=10%  Similarity=0.049  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcC----------ChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024043           73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIG----------RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADM  141 (273)
Q Consensus        73 a~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g----------~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~  141 (273)
                      +..+...|..+... ++.+|+.+|.+|+.+.....          -....+.++.++|.++..+|++++|+..|.+|+++
T Consensus        27 a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  106 (169)
T d1ihga1          27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  106 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh
Confidence            33455667776555 99999999999988664221          12345778999999999999999999999999988


Q ss_pred             HhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          142 FQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       142 ~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                      .+      .-..++.++|.++..+|+|++|+..|++++...+++
T Consensus       107 ~p------~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n  144 (169)
T d1ihga1         107 DP------SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED  144 (169)
T ss_dssp             CT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hh------hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence            53      224789999999999999999999999998776655

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.03  E-value=5.2e-10  Score=79.77  Aligned_cols=92  Identities=8%  Similarity=0.012  Sum_probs=76.9

Q ss_pred             HHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHH
Q 024043           76 YVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQC  154 (273)
Q Consensus        76 ~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~  154 (273)
                      ..+.|.++... ++++|+.+|++++.+.+..      +.++..+|.++...|++++|+.+|++|+++.+..      ..+
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~a   86 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPER------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD------IAV   86 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhccccccc------chhhhhhhhhhhhhhhHHHhhccccccccccccc------ccc
Confidence            34567776555 8999999999998876543      5789999999999999999999999999986432      478


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043          155 KQKVAQYAAELEQYHKSIEIYEEIA  179 (273)
Q Consensus       155 ~~~~a~~~~~~g~y~~A~~~~~~~~  179 (273)
                      +..+|.++..+|++++|++++++.+
T Consensus        87 ~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          87 HAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            8999999999999999999999874

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.03  E-value=1.5e-09  Score=77.31  Aligned_cols=93  Identities=11%  Similarity=0.012  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhchh
Q 024043          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK  193 (273)
Q Consensus       114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~  193 (273)
                      ...++|.++...|++++|+.+|++++.+.+..      ..++..+|.++...|++++|+.+|++++...+.+       .
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------~   84 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-------I   84 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------H
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhccccccc------chhhhhhhhhhhhhhhHHHhhccccccccccccc-------c
Confidence            45678999999999999999999999986432      5789999999999999999999999998765554       3


Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHH
Q 024043          194 GHLLNAGICQLCKGDVVAITNALERY  219 (273)
Q Consensus       194 ~~~~~~gl~~l~~gd~~~A~~~~~~~  219 (273)
                      ..+..+|.++...|++.+|.++++++
T Consensus        85 ~a~~~la~~y~~~g~~~~A~~~l~~~  110 (112)
T d1hxia_          85 AVHAALAVSHTNEHNANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHCCCHHHHHHHHHHH
Confidence            47788999999999999999999987

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=8.3e-09  Score=71.06  Aligned_cols=74  Identities=12%  Similarity=0.129  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC-cccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV-TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~-~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                      +.-..++|.++...|+|++|+.+|++|+.+.+.... ....+.++.++|.++.++|+|++|+.+|++++...+++
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~   79 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH   79 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCC
Confidence            345678999999999999999999999999987644 35667899999999999999999999999998776665

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.88  E-value=5.4e-10  Score=94.49  Aligned_cols=205  Identities=6%  Similarity=-0.090  Sum_probs=134.6

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 024043           42 SFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT---SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI  118 (273)
Q Consensus        42 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~---~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~l  118 (273)
                      .+...|++++|+.++.+++....+.      ..++...|.++...   ++++|+.++.+++.+...     .....+..+
T Consensus        82 ~~~~~~~~~~al~~~~~~l~~~pk~------~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-----~~~~~~~~~  150 (334)
T d1dcea1          82 PEESAALVKAELGFLESCLRVNPKS------YGTWHHRCWLLSRLPEPNWARELELCARFLEADER-----NFHCWDYRR  150 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-----CHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCCCc------HHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-----hhhhhhhHH
Confidence            3444566788888888888764322      24566677766554   689999999999998432     233345678


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccc--------hhhh
Q 024043          119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNN--------LLKY  190 (273)
Q Consensus       119 g~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~--------~~~~  190 (273)
                      |.++...+.+++|+.++++++.+...      -..++..+|.++..+|+|++|+..++++....+...        ....
T Consensus       151 ~~~~~~~~~~~~Al~~~~~~i~~~p~------~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~  224 (334)
T d1dcea1         151 FVAAQAAVAPAEELAFTDSLITRNFS------NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN  224 (334)
T ss_dssp             HHHHHTCCCHHHHHHHHHTTTTTTCC------CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHhccccHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcch
Confidence            89999999999999999999888542      246789999999999998877654443321111100        0000


Q ss_pred             -chhh--------------HHHHHHHHHHhcCCHHHHHHHHHHHH--------H-HHHHHhhcCHhHHHHHHHhhhccCC
Q 024043          191 -GVKG--------------HLLNAGICQLCKGDVVAITNALERYQ--------D-IAASMDEEDIAKFTDVVKEFDSMTP  246 (273)
Q Consensus       191 -~~~~--------------~~~~~gl~~l~~gd~~~A~~~~~~~~--------~-ll~a~~~~d~~~~~~~~~~~~~~~~  246 (273)
                       ....              .+..++.++...|+...|...+.+..        . +.-+......+.+.+++..|+.++.
T Consensus       225 ~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~  304 (334)
T d1dcea1         225 DQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA  304 (334)
T ss_dssp             CSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence             0000              11123445555667777777666532        0 1112233567889999999999999


Q ss_pred             CchhHHHHHHHHHHhcc
Q 024043          247 LDPWKTTLLLRVKEKLK  263 (273)
Q Consensus       247 ld~~~~~~l~~~~~~~~  263 (273)
                      +||.....+..++..+.
T Consensus       305 ldP~~~~y~~~L~~~~~  321 (334)
T d1dcea1         305 VDPMRAAYLDDLRSKFL  321 (334)
T ss_dssp             HCGGGHHHHHHHHHHHH
T ss_pred             HCcccHHHHHHHHHHHh
Confidence            99998888887776554

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=2.6e-08  Score=68.48  Aligned_cols=86  Identities=5%  Similarity=0.033  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccH
Q 024043           74 QAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR-LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSA  151 (273)
Q Consensus        74 ~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~-~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~  151 (273)
                      ..+.++|.++.+. ++.+|+.+|++|+.+...... ....+.++.++|.++...|++++|+.+|++|+++.+..      
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~------   79 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH------   79 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCC------
Confidence            4456888888777 999999999999999886543 34567899999999999999999999999999996433      


Q ss_pred             HHHHHHHHHHHHHh
Q 024043          152 NQCKQKVAQYAAEL  165 (273)
Q Consensus       152 ~~~~~~~a~~~~~~  165 (273)
                      ..++.+++.+...+
T Consensus        80 ~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          80 QRANGNLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            35677776554433

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=2.1e-08  Score=89.61  Aligned_cols=117  Identities=11%  Similarity=0.131  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCC
Q 024043           50 DKAGATYVKLANCHL-KLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHN  127 (273)
Q Consensus        50 ~~A~~~~~~a~~~~~-~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~  127 (273)
                      .+|...|..++..+. ..+-...-...+.++|.++... ++.+|+..+.+++.+.+        .+++.++|.++...|+
T Consensus        96 ~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--------~~~~~~LG~l~~~~~~  167 (497)
T d1ya0a1          96 EAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--------QHCLVHLGDIARYRNQ  167 (497)
T ss_dssp             HHHHHHHHHHHHHHTC-------------------------------CCHHHHHHH--------HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--------HHHHHHHHHHHHHccc
Confidence            445555555555443 2222334455677788888776 88999999999887654        3589999999999999


Q ss_pred             HHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 024043          128 IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR  180 (273)
Q Consensus       128 ~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~  180 (273)
                      +++|+.+|.+|+++.+..+      ..++++|.++...|++.+|+.+|.+++.
T Consensus       168 ~~~A~~~y~~A~~l~P~~~------~~~~~Lg~~~~~~~~~~~A~~~y~ral~  214 (497)
T d1ya0a1         168 TSQAESYYRHAAQLVPSNG------QPYNQLAILASSKGDHLTTIFYYCRSIA  214 (497)
T ss_dssp             HHHHHHHHHHHHHHCTTBS------HHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHCCCch------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            9999999999999987665      5789999999999999999999999973

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=5.1e-09  Score=75.70  Aligned_cols=99  Identities=11%  Similarity=-0.014  Sum_probs=71.3

Q ss_pred             HHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHhccCCcccHH
Q 024043           77 VDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE---HNIEQTIVFFEKAADMFQNEEVTTSAN  152 (273)
Q Consensus        77 ~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~---g~~~~A~~~y~~Al~~~~~~~~~~~~~  152 (273)
                      .++++.+... ++++|.+.|++++.+....      ..++.++|.++...   +++++|+..|++++..-.    .....
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~------~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~----~~~~~   72 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVS------KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS----KEEQR   72 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCC------HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC----HHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccC----CchHH
Confidence            3455555555 8888899999888865443      34888889888754   455678888887775421    12334


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          153 QCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       153 ~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                      .++..+|.+|..+|+|++|+++|++++...+++
T Consensus        73 ~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~  105 (122)
T d1nzna_          73 DYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN  105 (122)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCC
Confidence            688899999999999999999999998776665

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=1.1e-07  Score=68.43  Aligned_cols=97  Identities=12%  Similarity=0.072  Sum_probs=77.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc----CHHHHHHHHHHHHHHHHhcCChhHHHH
Q 024043           38 KAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT----SSNEAISCLEQAVNMFCDIGRLSMAAR  113 (273)
Q Consensus        38 ~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~----~~~eA~~~~~~Al~~~~~~g~~~~~a~  113 (273)
                      ..++.+...+++++|.+.|.+++.+...      -..++.+.|.++...    ++.+|+..|++++..    +.....+.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~------~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~----~~~~~~~~   73 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSV------SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK----GSKEEQRD   73 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCC------CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT----SCHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc----cCCchHHH
Confidence            4566777888999999999999987432      245888999998654    566788888887742    23344567


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (273)
Q Consensus       114 ~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~  144 (273)
                      ++.++|.+|..+|++++|+.+|++|+++-+.
T Consensus        74 ~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~  104 (122)
T d1nzna_          74 YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ  104 (122)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhCcC
Confidence            9999999999999999999999999998643

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=9.7e-08  Score=85.14  Aligned_cols=117  Identities=12%  Similarity=0.085  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHHHhc-CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcC
Q 024043           89 NEAISCLEQAVNMFCDI-GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQ  167 (273)
Q Consensus        89 ~eA~~~~~~Al~~~~~~-g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~  167 (273)
                      .+|...|+.++..+... +-....+..+.++|.++...|++++|+..+.+++.+..        ..++..+|+++...|+
T Consensus        96 ~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--------~~~~~~LG~l~~~~~~  167 (497)
T d1ya0a1          96 EAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--------QHCLVHLGDIARYRNQ  167 (497)
T ss_dssp             HHHHHHHHHHHHHHTC-------------------------------CCHHHHHHH--------HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--------HHHHHHHHHHHHHccc
Confidence            34455555555544322 11233456788999999999999999999999987653        3678999999999999


Q ss_pred             HHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          168 YHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       168 y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      |++|+.+|++++...+++.       ..++++|.++...||...|..++.+..
T Consensus       168 ~~~A~~~y~~A~~l~P~~~-------~~~~~Lg~~~~~~~~~~~A~~~y~ral  213 (497)
T d1ya0a1         168 TSQAESYYRHAAQLVPSNG-------QPYNQLAILASSKGDHLTTIFYYCRSI  213 (497)
T ss_dssp             HHHHHHHHHHHHHHCTTBS-------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCch-------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999999999987766553       467889999999999999999888765

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.60  E-value=4.3e-08  Score=82.40  Aligned_cols=202  Identities=6%  Similarity=-0.028  Sum_probs=133.7

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH----H---HHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHH
Q 024043           42 SFKLAKSWDKAGATYVKLANCHLKLESKHEA----A---QAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAAR  113 (273)
Q Consensus        42 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~a----a---~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~  113 (273)
                      .....+..++|++++.+++.+...   ...+    .   ..+...+.++... ++.+|+.++++++...++..      .
T Consensus        38 ~~~~~~~~~~al~~~~~~l~~~P~---~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~------~  108 (334)
T d1dcea1          38 KRQAGELDESVLELTSQILGANPD---FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY------G  108 (334)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH------H
T ss_pred             HHhcccccHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcH------H
Confidence            333344458999999999876432   2111    1   1112222223222 57899999999988765543      4


Q ss_pred             HHHHHHHHHHhcC--CHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhc
Q 024043          114 YYKEIAELYESEH--NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG  191 (273)
Q Consensus       114 ~l~~lg~~~~~~g--~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~  191 (273)
                      ++..+|.++...+  ++++|+.++.+++++..     ......+...|.++...|.+++|+..+++++...+.+      
T Consensus       109 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-----~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~------  177 (334)
T d1dcea1         109 TWHHRCWLLSRLPEPNWARELELCARFLEADE-----RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN------  177 (334)
T ss_dssp             HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC------
T ss_pred             HHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-----hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCC------
Confidence            7888888888775  58999999999999844     2333446778899999999999999999987654443      


Q ss_pred             hhhHHHHHHHHHHhcCCHHHHHHHHH-------H----HHH-------------HHHH---------------HhhcCHh
Q 024043          192 VKGHLLNAGICQLCKGDVVAITNALE-------R----YQD-------------IAAS---------------MDEEDIA  232 (273)
Q Consensus       192 ~~~~~~~~gl~~l~~gd~~~A~~~~~-------~----~~~-------------ll~a---------------~~~~d~~  232 (273)
                       ...+.++|.++...|++..|...++       .    +..             ...+               .......
T Consensus       178 -~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~  256 (334)
T d1dcea1         178 -YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQ  256 (334)
T ss_dssp             -HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHh
Confidence             2356777888888877655422111       1    110             0000               1112246


Q ss_pred             HHHHHHHhhhccCCCchhHHHHHHHHHHhccc
Q 024043          233 KFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKA  264 (273)
Q Consensus       233 ~~~~~~~~~~~~~~ld~~~~~~l~~~~~~~~~  264 (273)
                      ...+++..|....+.+|+....+..+...+..
T Consensus       257 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  288 (334)
T d1dcea1         257 SELESCKELQELEPENKWCLLTIILLMRALDP  288 (334)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHHHhhCchHHHHHHHHHHHHHH
Confidence            78888999999999999999888887776653

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.56  E-value=1.9e-06  Score=71.42  Aligned_cols=185  Identities=11%  Similarity=0.067  Sum_probs=127.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHH
Q 024043           35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAAR  113 (273)
Q Consensus        35 ~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~  113 (273)
                      +....+.+....|+++.|...|.+++.....  +   ...++...+.+.... ++++|.+.|++++.......      .
T Consensus       101 l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~--~---~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~------~  169 (308)
T d2onda1         101 LYFAYADYEESRMKYEKVHSIYNRLLAIEDI--D---PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH------H  169 (308)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS--C---THHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCT------H
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHhcC--C---hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH------H
Confidence            3444567788899999999999998864211  1   223455666666655 89999999999987554332      3


Q ss_pred             HHHHHHHHH-HhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccchhhhch
Q 024043          114 YYKEIAELY-ESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGV  192 (273)
Q Consensus       114 ~l~~lg~~~-~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~  192 (273)
                      .+...+... ...|+++.|...|++++..+...      ...+..++......|++++|..+|++++...+.++.   ..
T Consensus       170 ~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~------~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~---~~  240 (308)
T d2onda1         170 VYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI------PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE---KS  240 (308)
T ss_dssp             HHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG---GC
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhh------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH---HH
Confidence            566666654 34589999999999999987543      467889999999999999999999999865443321   11


Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCHhHHHHHHHhh
Q 024043          193 KGHLLNAGICQLCKGDVVAITNALERYQDIAASMDEEDIAKFTDVVKEF  241 (273)
Q Consensus       193 ~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~a~~~~d~~~~~~~~~~~  241 (273)
                      ...+.....--...||...++.+.+++..++..  ....+.....+..|
T Consensus       241 ~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~ry  287 (308)
T d2onda1         241 GEIWARFLAFESNIGDLASILKVEKRRFTAFRE--EYEGKETALLVDRY  287 (308)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT--TTSSCHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcc--ccccchHHHHHHHH
Confidence            222333333334569999999998888655432  22234555666666

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.48  E-value=5.9e-08  Score=72.07  Aligned_cols=90  Identities=16%  Similarity=0.068  Sum_probs=65.7

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-----------CHHHHHHHHHHHHHHHHhcCChhH
Q 024043           42 SFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-----------SSNEAISCLEQAVNMFCDIGRLSM  110 (273)
Q Consensus        42 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-----------~~~eA~~~~~~Al~~~~~~g~~~~  110 (273)
                      -|...+.|++|+.+|++++.+...      -+.++.++|.++...           .+++|+.+|++|+++-+..     
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~------~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~-----   74 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPL------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK-----   74 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-----
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCc------chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchh-----
Confidence            356677899999999999988532      246777888877543           4578999999999875543     


Q ss_pred             HHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHHHh
Q 024043          111 AARYYKEIAELYESEHN-----------IEQTIVFFEKAADMFQ  143 (273)
Q Consensus       111 ~a~~l~~lg~~~~~~g~-----------~~~A~~~y~~Al~~~~  143 (273)
                       +.++.++|.+|..+|+           +++|+++|++|+++.+
T Consensus        75 -~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P  117 (145)
T d1zu2a1          75 -DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP  117 (145)
T ss_dssp             -HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             -hHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCC
Confidence             4488899999877643           5667777777776654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.45  E-value=1.7e-07  Score=69.47  Aligned_cols=87  Identities=9%  Similarity=0.035  Sum_probs=68.4

Q ss_pred             CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHHHhccCCcccHHHHHH
Q 024043           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE----------HNIEQTIVFFEKAADMFQNEEVTTSANQCKQ  156 (273)
Q Consensus        87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~----------g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~  156 (273)
                      .+++|+.+|++|+.+.+..      +.++.++|.++...          +.+++|+..|++|+++-+..      ..++.
T Consensus        12 ~fe~A~~~~e~al~~~P~~------~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~------~~a~~   79 (145)
T d1zu2a1          12 LFEQIRQDAENTYKSNPLD------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK------DEAVW   79 (145)
T ss_dssp             HHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC------HHHHH
T ss_pred             cHHHHHHHHHHHHhhCCcc------hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchh------hHHHh
Confidence            6899999999999987655      35888888888643          45678999999999885322      46789


Q ss_pred             HHHHHHHHhcC-----------HHHHHHHHHHHHHHHhcc
Q 024043          157 KVAQYAAELEQ-----------YHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       157 ~~a~~~~~~g~-----------y~~A~~~~~~~~~~~~~~  185 (273)
                      ++|.+|..+|+           |.+|+++|++++...+++
T Consensus        80 ~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~  119 (145)
T d1zu2a1          80 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN  119 (145)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             hHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCH
Confidence            99999987754           688999999998766655

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.40  E-value=2.5e-06  Score=65.33  Aligned_cols=105  Identities=10%  Similarity=-0.065  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC-----Cc-----------ccHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 024043          113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE-----VT-----------TSANQCKQKVAQYAAELEQYHKSIEIYE  176 (273)
Q Consensus       113 ~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~-----~~-----------~~~~~~~~~~a~~~~~~g~y~~A~~~~~  176 (273)
                      ..+.+.|......|++++|++.|.+|+++++..-     ..           .....++.+++.++..+|+|++|+.+++
T Consensus        12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~   91 (179)
T d2ff4a2          12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE   91 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence            4566777777777888888888888888876331     00           1123677889999999999999999999


Q ss_pred             HHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 024043          177 EIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDIAA  224 (273)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~~ll~  224 (273)
                      +++...+.+.       ..+..++.++...|+..+|.++|+++...+.
T Consensus        92 ~al~~~P~~e-------~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~  132 (179)
T d2ff4a2          92 ALTFEHPYRE-------PLWTQLITAYYLSDRQSDALGAYRRVKTTLA  132 (179)
T ss_dssp             HHHHHSTTCH-------HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCccH-------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            9987666542       3567788899999999999999999876553

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.39  E-value=1.5e-06  Score=66.56  Aligned_cols=62  Identities=8%  Similarity=-0.066  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024043          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA  179 (273)
Q Consensus       112 a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~  179 (273)
                      ..++.+++.++...|++++|+.++++++.+....      ..++..++.++..+|++.+|++.|+++.
T Consensus        67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~------e~~~~~l~~al~~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2          67 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYR------EPLWTQLITAYYLSDRQSDALGAYRRVK  128 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            3578899999999999999999999999987533      3679999999999999999999999984

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.31  E-value=6.1e-05  Score=61.93  Aligned_cols=195  Identities=13%  Similarity=0.047  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhc
Q 024043           29 YEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKL-E-SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI  105 (273)
Q Consensus        29 ~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~~~-~-~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~  105 (273)
                      |-..+++...-++.....+....+...+.++..++.+. . ..+.....+...+.+.... ++++|...|++++....  
T Consensus        53 W~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~--  130 (308)
T d2onda1          53 WYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED--  130 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSS--
T ss_pred             HHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhc--
Confidence            34555555555555554544444444444444444321 0 0111223455666666655 99999999999986422  


Q ss_pred             CChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHhc
Q 024043          106 GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAA-ELEQYHKSIEIYEEIARQSLN  184 (273)
Q Consensus       106 g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~-~~g~y~~A~~~~~~~~~~~~~  184 (273)
                         .....++...+......|+++.|...|.+|+......      ...+...|.+.. ..|+++.|..+|++++...+.
T Consensus       131 ---~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~------~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~  201 (308)
T d2onda1         131 ---IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD  201 (308)
T ss_dssp             ---SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT
T ss_pred             ---CChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh
Confidence               2233467777888888899999999999998765433      245666776544 468999999999999876554


Q ss_pred             cchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH-----------HHHH---HH--hhcCHhHHHHHHHhh
Q 024043          185 NNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ-----------DIAA---SM--DEEDIAKFTDVVKEF  241 (273)
Q Consensus       185 ~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~-----------~ll~---a~--~~~d~~~~~~~~~~~  241 (273)
                      ++       ..+...+......||+.+|+..|++..           .+..   .+  ..||.+.+.++.++.
T Consensus       202 ~~-------~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~  267 (308)
T d2onda1         202 IP-------EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  267 (308)
T ss_dssp             CH-------HHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             hH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            42       345555666678999999999999864           1211   12  458887776665543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.16  E-value=0.00044  Score=54.96  Aligned_cols=96  Identities=11%  Similarity=0.231  Sum_probs=59.1

Q ss_pred             HHHHHHHHHh----cCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHhccc
Q 024043          115 YKEIAELYES----EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAE----LEQYHKSIEIYEEIARQSLNNN  186 (273)
Q Consensus       115 l~~lg~~~~~----~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~----~g~y~~A~~~~~~~~~~~~~~~  186 (273)
                      +..+|.++..    ..+...+..+++++.+.    +    -..++.++|.++..    ..++++|+.+|+++...  ++ 
T Consensus       145 ~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~----g----~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~-  213 (265)
T d1ouva_         145 CTILGSLYDAGRGTPKDLKKALASYDKACDL----K----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--EN-  213 (265)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TC-
T ss_pred             hhhhhhhhccCCCcccccccchhhhhccccc----c----ccccccchhhhcccCcccccchhhhhhhHhhhhcc--cC-
Confidence            3455555554    23455555555555432    1    13567788888776    56889999999888532  22 


Q ss_pred             hhhhchhhHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHHhhcCHhH
Q 024043          187 LLKYGVKGHLLNAGICQLC----KGDVVAITNALERYQDIAASMDEEDIAK  233 (273)
Q Consensus       187 ~~~~~~~~~~~~~gl~~l~----~gd~~~A~~~~~~~~~ll~a~~~~d~~~  233 (273)
                            ...++++|.+|..    ..|+..|.+.|++.      .+.|+.+.
T Consensus       214 ------~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kA------a~~g~~~A  252 (265)
T d1ouva_         214 ------GGGCFNLGAMQYNGEGVTRNEKQAIENFKKG------CKLGAKGA  252 (265)
T ss_dssp             ------HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHH------HHHTCHHH
T ss_pred             ------HHHHHHHHHHHHcCCCCccCHHHHHHHHHHH------HHCcCHHH
Confidence                  2356778887764    33777788888774      45555543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.86  E-value=5e-05  Score=54.60  Aligned_cols=77  Identities=9%  Similarity=0.248  Sum_probs=42.4

Q ss_pred             CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHH
Q 024043           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES----EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYA  162 (273)
Q Consensus        87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~----~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~  162 (273)
                      ++++|+.+|++|.+    .|+    +.+...+|.+|..    ..++++|+++|++|++.-    +    ..+...+|.+|
T Consensus        38 ~~~~a~~~~~~aa~----~g~----~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g----~----~~a~~~Lg~~y  101 (133)
T d1klxa_          38 NKQKLFQYLSKACE----LNS----GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN----D----QDGCLILGYKQ  101 (133)
T ss_dssp             CHHHHHHHHHHHHH----TTC----HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----C----HHHHHHHHHHH
T ss_pred             CHHHHHHHHhhhhc----ccc----hhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC----c----chHHHHHHHHH
Confidence            55666666666543    233    2345555665554    245666666666666652    1    23455566666


Q ss_pred             HH----hcCHHHHHHHHHHHH
Q 024043          163 AE----LEQYHKSIEIYEEIA  179 (273)
Q Consensus       163 ~~----~g~y~~A~~~~~~~~  179 (273)
                      ..    ..++.+|+++|+++.
T Consensus       102 ~~G~gv~~d~~~A~~~~~~Aa  122 (133)
T d1klxa_         102 YAGKGVVKNEKQAVKTFEKAC  122 (133)
T ss_dssp             HHTSSSCCCHHHHHHHHHHHH
T ss_pred             HcCCccCCCHHHHHHHHHHHH
Confidence            54    556666666666654

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.82  E-value=0.00027  Score=50.56  Aligned_cols=114  Identities=12%  Similarity=0.141  Sum_probs=80.9

Q ss_pred             CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHH--
Q 024043           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAE--  164 (273)
Q Consensus        87 ~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~--  164 (273)
                      |+++|+.+|++|.+    .|++.    +...++.  ....++++|+.+|++|.+.    ++    ..+...+|.+|..  
T Consensus         8 d~~~A~~~~~kaa~----~g~~~----a~~~l~~--~~~~~~~~a~~~~~~aa~~----g~----~~a~~~Lg~~y~~g~   69 (133)
T d1klxa_           8 DLKKAIQYYVKACE----LNEMF----GCLSLVS--NSQINKQKLFQYLSKACEL----NS----GNGCRFLGDFYENGK   69 (133)
T ss_dssp             HHHHHHHHHHHHHH----TTCTT----HHHHHHT--CTTSCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHCS
T ss_pred             CHHHHHHHHHHHHH----CCChh----hhhhhcc--ccccCHHHHHHHHhhhhcc----cc----hhhhhhHHHhhhhcc
Confidence            78899999999975    45543    3444543  2347899999999999864    22    3567889998876  


Q ss_pred             --hcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHHhhcCHhH
Q 024043          165 --LEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC----KGDVVAITNALERYQDIAASMDEEDIAK  233 (273)
Q Consensus       165 --~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~----~gd~~~A~~~~~~~~~ll~a~~~~d~~~  233 (273)
                        ..++.+|+++|+++...  +       .....+++|.+|..    ..|..+|.+.+++.      .+.|+.+.
T Consensus        70 ~~~~d~~~A~~~~~~aa~~--g-------~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~A------a~~G~~~A  129 (133)
T d1klxa_          70 YVKKDLRKAAQYYSKACGL--N-------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA------CRLGSEDA  129 (133)
T ss_dssp             SSCCCHHHHHHHHHHHHHT--T-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH------HHTTCHHH
T ss_pred             ccchhhHHHHHHHhhhhcc--C-------cchHHHHHHHHHHcCCccCCCHHHHHHHHHHH------HHCCCHHH
Confidence              35799999999998642  2       23356778888765    45888888888774      45666554

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.50  E-value=3.5e-05  Score=62.45  Aligned_cols=120  Identities=10%  Similarity=0.025  Sum_probs=75.0

Q ss_pred             HhccCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHH
Q 024043           83 YKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYA  162 (273)
Q Consensus        83 ~~~~~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~  162 (273)
                      +...++++|+..|++++......      +.++..+|.++...|++++|+..|++++++....      ...+..++.++
T Consensus         7 L~~G~l~eAl~~l~~al~~~P~d------~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~------~~~~~~l~~ll   74 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKASPKD------ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY------LPGASQLRHLV   74 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG------HHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHH
Confidence            33447888888888888766544      3478888888888888888888888888875422      24455666666


Q ss_pred             HHhcCHHHHHHHHHHHHHHHhccchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 024043          163 AELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (273)
Q Consensus       163 ~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~  220 (273)
                      ...+...++...+.+..  .+..+    .....++..+.++...||.++|...+++..
T Consensus        75 ~a~~~~~~a~~~~~~~~--~~~~p----~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~  126 (264)
T d1zbpa1          75 KAAQARKDFAQGAATAK--VLGEN----EELTKSLVSFNLSMVSQDYEQVSELALQIE  126 (264)
T ss_dssp             HHHHHHHHHTTSCCCEE--CCCSC----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HhccccHHHHHHhhhhh--cccCc----hHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            55555554443322211  01111    111233445666777888888888877754

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.23  E-value=6e-05  Score=60.99  Aligned_cols=122  Identities=10%  Similarity=-0.007  Sum_probs=84.9

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 024043           44 KLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELY  122 (273)
Q Consensus        44 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~  122 (273)
                      ...|++++|+..|+++++....      -+..+..++.++... ++++|+..|++++++....      ......++.++
T Consensus         7 L~~G~l~eAl~~l~~al~~~P~------d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~------~~~~~~l~~ll   74 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKASPK------DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY------LPGASQLRHLV   74 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG------HHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHH
Confidence            3468999999999999877532      246788899999777 9999999999999886533      23555666665


Q ss_pred             HhcCCHHHHHHHHHHHHHHHhcc---CCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Q 024043          123 ESEHNIEQTIVFFEKAADMFQNE---EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (273)
Q Consensus       123 ~~~g~~~~A~~~y~~Al~~~~~~---~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~~  185 (273)
                      ...+..++       +.......   +.+ .....+...+.++...|++++|++.++++....+..
T Consensus        75 ~a~~~~~~-------a~~~~~~~~~~~~p-~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~  132 (264)
T d1zbpa1          75 KAAQARKD-------FAQGAATAKVLGEN-EELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK  132 (264)
T ss_dssp             HHHHHHHH-------HTTSCCCEECCCSC-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred             HhccccHH-------HHHHhhhhhcccCc-hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence            54343333       32222221   222 333556677888999999999999999987665544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.21  E-value=0.0094  Score=46.77  Aligned_cols=90  Identities=17%  Similarity=0.224  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHhccCCc
Q 024043           74 QAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES----EHNIEQTIVFFEKAADMFQNEEVT  148 (273)
Q Consensus        74 ~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~----~g~~~~A~~~y~~Al~~~~~~~~~  148 (273)
                      .++.++|..+... ++.+|+++|++|.+.        +-+.+..++|.+|..    ..++..|..+++++...-      
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--------g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~------   68 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDL--------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------   68 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc------
Confidence            4556666666555 777777777776532        666677777777665    346666666666655331      


Q ss_pred             ccHHHHHHHHHHHHHH----hcCHHHHHHHHHHHH
Q 024043          149 TSANQCKQKVAQYAAE----LEQYHKSIEIYEEIA  179 (273)
Q Consensus       149 ~~~~~~~~~~a~~~~~----~g~y~~A~~~~~~~~  179 (273)
                        .......+|.++..    .+++++|...|+++.
T Consensus        69 --~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~  101 (265)
T d1ouva_          69 --YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKAC  101 (265)
T ss_dssp             --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             --ccchhhccccccccccccchhhHHHHHHHhhhh
Confidence              12334555655543    246666666666654

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.16  E-value=0.0016  Score=45.71  Aligned_cols=74  Identities=8%  Similarity=0.034  Sum_probs=57.3

Q ss_pred             hhHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 024043          108 LSMAARYYKEIAELYESE---HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN  184 (273)
Q Consensus       108 ~~~~a~~l~~lg~~~~~~---g~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~  184 (273)
                      ..-...+..+.|.++...   .+.++++.++++.+..     ++....+|+..+|..|.++|+|++|.+++++++...++
T Consensus        31 ~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~-----~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~  105 (124)
T d2pqrb1          31 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN  105 (124)
T ss_dssp             GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             CCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            333356778888888765   4556888888876643     23345689999999999999999999999999988887


Q ss_pred             cc
Q 024043          185 NN  186 (273)
Q Consensus       185 ~~  186 (273)
                      +.
T Consensus       106 n~  107 (124)
T d2pqrb1         106 NK  107 (124)
T ss_dssp             CH
T ss_pred             cH
Confidence            74

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.43  E-value=0.0091  Score=41.73  Aligned_cols=68  Identities=9%  Similarity=-0.046  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHhcc----CHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 024043           73 AQAYVDAAHCYKKT----SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE  145 (273)
Q Consensus        73 a~~~~~~~~~~~~~----~~~eA~~~~~~Al~~~~~~g~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~  145 (273)
                      ..+-.+.|-+..+.    +..+++.++++++..     ++.....++..+|..|..+|+|++|..++++++++-+..
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~-----~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n  106 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN  106 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCc
Confidence            34555566655433    678899999887642     455667899999999999999999999999999996644

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.28  E-value=0.064  Score=33.88  Aligned_cols=39  Identities=15%  Similarity=0.056  Sum_probs=31.4

Q ss_pred             ChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 024043          107 RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE  145 (273)
Q Consensus       107 ~~~~~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~~  145 (273)
                      .|-..|..+..-++-+...|.|++||+|+++|++...+.
T Consensus         3 sPLN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~eA   41 (83)
T d2crba1           3 GPLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEA   41 (83)
T ss_dssp             THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            456677778888888888899999999999998887653

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.48  E-value=0.43  Score=31.01  Aligned_cols=34  Identities=24%  Similarity=0.285  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 024043          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (273)
Q Consensus       111 ~a~~l~~lg~~~~~~g~~~~A~~~y~~Al~~~~~  144 (273)
                      .|..+.+-|.-+...|+|++|+.+|.+|++++..
T Consensus        14 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~   47 (93)
T d1wfda_          14 AAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQ   47 (93)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            4445555666677779999999999999988764

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.15  E-value=0.39  Score=30.12  Aligned_cols=37  Identities=22%  Similarity=0.240  Sum_probs=22.5

Q ss_pred             CHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHh
Q 024043           68 SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCD  104 (273)
Q Consensus        68 ~~~~aa~~~~~~~~~~~~~-~~~eA~~~~~~Al~~~~~  104 (273)
                      .|...|..+..-++-+... .|++||+|+++|+....+
T Consensus         3 sPLN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~e   40 (83)
T d2crba1           3 GPLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSE   40 (83)
T ss_dssp             THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            3445555666556555444 777777777777665543

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.94  E-value=1.1  Score=28.90  Aligned_cols=37  Identities=16%  Similarity=0.191  Sum_probs=29.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 024043           27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHL   64 (273)
Q Consensus        27 ~~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~~   64 (273)
                      ++...|+.+..+ +.-+-..|+|++|+.+|.+|++.+.
T Consensus        10 ~~~~~A~~l~~~-Av~~D~~g~y~eA~~~Y~~aie~l~   46 (93)
T d1wfda_          10 SDSTAAVAVLKR-AVELDAESRYQQALVCYQEGIDMLL   46 (93)
T ss_dssp             CHHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            677788888766 5566778899999999999988875

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.57  E-value=1  Score=27.91  Aligned_cols=35  Identities=23%  Similarity=0.231  Sum_probs=18.3

Q ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 024043           28 KYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCH   63 (273)
Q Consensus        28 ~~~~A~~~~~~a~~~~~~~~~~~~A~~~~~~a~~~~   63 (273)
                      ..++|.++..+ +.-+-..|+|++|+.+|..|++.+
T Consensus         7 ~l~~A~~l~~~-Av~~D~~~~y~~A~~~Y~~a~~~l   41 (77)
T d1wr0a1           7 NLQKAIDLASK-AAQEDKAGNYEEALQLYQHAVQYF   41 (77)
T ss_dssp             HHHHHHHHHHH-HHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHH
Confidence            44455555544 234445555556666665555554

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=80.44  E-value=12  Score=29.73  Aligned_cols=124  Identities=11%  Similarity=0.091  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHH---------HHHHhccCCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 024043          114 YYKEIAELYESEHNIEQTIVFFEKA---------ADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN  184 (273)
Q Consensus       114 ~l~~lg~~~~~~g~~~~A~~~y~~A---------l~~~~~~~~~~~~~~~~~~~a~~~~~~g~y~~A~~~~~~~~~~~~~  184 (273)
                      ....++.+|.+ -++++-+++..+-         +.+.++.+       .+..+.-+|.+.|++++|+.+.-.-      
T Consensus       135 ~~~~L~~lyak-~~~~kl~e~l~~~s~~y~~~k~~~~c~~~~-------l~~elv~Ly~~~~~~~~A~~~~i~~------  200 (336)
T d1b89a_         135 MFTELAILYSK-FKPQKMREHLELFWSRVNIPKVLRAAEQAH-------LWAELVFLYDKYEEYDNAIITMMNH------  200 (336)
T ss_dssp             HHHHHHHHHHT-TCHHHHHHHHHHHSTTSCHHHHHHHHHTTT-------CHHHHHHHHHHTTCHHHHHHHHHHS------
T ss_pred             HHHHHHHHHHH-hChHHHHHHHHhccccCCHHHHHHHHHHcC-------ChHHHHHHHHhcCCHHHHHHHHHHc------
Confidence            45566776666 4455555555432         22221111       1234455666777777777654321      


Q ss_pred             cchhhhchhhHHHHHHHHHHhcCCHHHHHHHHHHHH--------HHHHHH-hhcCHhHHHHHHHhhhccCCCchhHHHHH
Q 024043          185 NNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ--------DIAASM-DEEDIAKFTDVVKEFDSMTPLDPWKTTLL  255 (273)
Q Consensus       185 ~~~~~~~~~~~~~~~gl~~l~~gd~~~A~~~~~~~~--------~ll~a~-~~~d~~~~~~~~~~~~~~~~ld~~~~~~l  255 (273)
                       +..-+..    .....++....+.+-.-+++..|.        +++..+ ..-|+.++-+.+.+.+.+.-+.||...+.
T Consensus       201 -~~~~~~~----~~f~e~~~k~~N~e~~~~~i~~yL~~~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~  275 (336)
T d1b89a_         201 -PTDAWKE----GQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQ  275 (336)
T ss_dssp             -TTTTCCH----HHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHH
T ss_pred             -chhhhhH----HHHHHHHHccCChHHHHHHHHHHHHcCHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence             0000000    011122233344444444444443        455555 44677788888888888888889888654


Q ss_pred             H
Q 024043          256 L  256 (273)
Q Consensus       256 ~  256 (273)
                      .
T Consensus       276 ~  276 (336)
T d1b89a_         276 N  276 (336)
T ss_dssp             T
T ss_pred             H
Confidence            3