Citrus Sinensis ID: 024046

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270---
Protein Sequence
MGSLSEYQKLAQKKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKVGNFENYQSHI
Secondary Structure (PSIPRED)
cccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHcccccHHHHHHHHcccccccccHHHHHHHHHHHcccEEEEcccccccEEcHHHccccccccccccHHHHHHccccHHHHHHHHHHHHHHHccccHHHHcccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEccccHHHHHHHHHHccccEEEEcccHHHHHHcccccccEEEccccccccccccEEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHHcccHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHcccEcHHHHHcccccccccHHHHHHHHHHHHHHcccEEEEEcccEEEEEEcHHHccccccEccEccHHHHHHHccHHHHHHHccHHHHHHHcccHHHHHHcccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEccccccHHHHHHcccccccEEEEEcHHHHccccccccEEEEEcccccccccccEEEccEEEcccccccc
Coil and Loop (DISEMBL)
MGSLSEYQKLAQKKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEcsvsggerlyalnpvskyfvsnkdgaslghfmalpldKVFMESWLGLKDAVMeggipfnrvhGMHIfeyasgnprfnetyHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITskypqikavnfdlphvvqdapsyagvehvggnmfesvpeGDAILMKVgnfenyqshi
Flexible Loop (DISEMBL)
MGSLSEYQKLAQKKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKVGNFENYQSHI
Low Complexity Region (SEG)
MGSLSEYQKLAQKKHeeeeeeeeSYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKVGNFENYQSHI
Disordered region (IsUnstruct)
*****************************QLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKVGNF*******
Disordered Region (DISOPRED)
*************************SHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKVGNFENYQSHI
Disordered Region (DISEMBL)
***************************AMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKVGNFENYQSHI
Disordered Region (DISPRO)
*******************EEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKVGNFENY****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSxxxxxxxxxxxxxxxxxxxxxYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKVGNFENYQSHI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	273	2.2.26 [Sep-21-2011]
A9X7L0	364	Anthranilate N-methyltran	N/A	no	0.959	0.719	0.789	1e-114
Q8W013	363	Caffeic acid 3-O-methyltr	N/A	no	0.919	0.691	0.552	1e-79
Q9XGV9	361	Caffeic acid 3-O-methyltr	N/A	no	0.890	0.673	0.557	2e-77
Q9FK25	363	Flavone 3'-O-methyltransf	yes	no	0.941	0.707	0.526	3e-77
Q8LL87	350	Caffeic acid 3-O-methyltr	N/A	no	0.886	0.691	0.556	7e-77
Q9XGW0	361	Caffeic acid 3-O-methyltr	N/A	no	0.890	0.673	0.545	8e-76
Q6T1F5	365	Caffeic acid 3-O-methyltr	N/A	no	0.893	0.668	0.539	1e-75
P46484	366	Caffeic acid 3-O-methyltr	N/A	no	0.886	0.661	0.552	2e-75
Q43046	365	Caffeic acid 3-O-methyltr	N/A	no	0.941	0.704	0.518	6e-75
Q00763	365	Caffeic acid 3-O-methyltr	N/A	no	0.941	0.704	0.514	8e-75

>sp|A9X7L0|ANMT_RUTGR Anthranilate N-methyltransferase OS=Ruta graveolens PE=1 SV=1

 Score =  412 bits (1059), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 210/266 (78%), Positives = 232/266 (87%), Gaps = 4/266 (1%)

Query: 1   MGSLSEYQKLAQKKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA--GE 58
           MGSLSE     +   E EE+EEESYS AMQL+M +VLPMATQ+AIQLGVFEIIAKA  G 
Sbjct: 1   MGSLSESHTQYKHGVEVEEDEEESYSRAMQLSMAIVLPMATQSAIQLGVFEIIAKAPGGR 60

Query: 59  LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG--GERLYALNPVSKYFVSNK 116
           LSA EIA  LQAQN KAP+MLDRMLRLLVSHRVL+CSVSG  GERLY L  VSKYFV ++
Sbjct: 61  LSASEIATILQAQNPKAPVMLDRMLRLLVSHRVLDCSVSGPAGERLYGLTSVSKYFVPDQ 120

Query: 117 DGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEA 176
           DGASLG+FMALPLDKVFMESW+G+K AVMEGGIPFNRVHGMHIFEYAS N +F++TYH A
Sbjct: 121 DGASLGNFMALPLDKVFMESWMGVKGAVMEGGIPFNRVHGMHIFEYASSNSKFSDTYHRA 180

Query: 177 MFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDA 236
           MFNHSTIA++RILEHY+GF+NV +LVDVGGG GVTLSMI SKYP I+A+NFDLPHVVQDA
Sbjct: 181 MFNHSTIALKRILEHYKGFENVTKLVDVGGGLGVTLSMIASKYPHIQAINFDLPHVVQDA 240

Query: 237 PSYAGVEHVGGNMFESVPEGDAILMK 262
            SY GVEHVGGNMFESVPEGDAILMK
Sbjct: 241 ASYPGVEHVGGNMFESVPEGDAILMK 266

Involved in the biosynthesis of acridine alkaloids. N-methyltransferase with a strict substrate specificity for anthranilate. No activity with anthranilic acid methyl ester, anthraniloyl CoA, 3- or 4-amino-benzoic acid, salicylic acid, catechol, eugenol, caffeic acid, quercetin, theobromin, theophyllin, putrescine and nicotinic acid among others.
Ruta graveolens (taxid: 37565)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1EC: 1

>sp|Q8W013|COMT1_CATRO Caffeic acid 3-O-methyltransferase OS=Catharanthus roseus GN=COMT1 PE=2 SV=1

 Score =  296 bits (758), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 143/259 (55%), Positives = 187/259 (72%), Gaps = 8/259 (3%)

Query: 12  QKKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE---LSAPEIAAQL 68
             K+   +EEEE+   AM+LA   VLPM  ++AI+L + E+I K+G    +S  E+AAQL
Sbjct: 7   DNKNSMTKEEEEACLSAMRLASASVLPMVLKSAIELDLLELIKKSGPGAYVSPSELAAQL 66

Query: 69  QAQNVKAPMMLDRMLRLLVSHRVLECSVS-----GGERLYALNPVSKYFVSNKDGASLGH 123
             QN  AP+MLDR+LRLL S+ VL C++      G ERLY+L PV K+   N+DG S+  
Sbjct: 67  PTQNPDAPVMLDRILRLLASYSVLNCTLKDLPDGGIERLYSLAPVCKFLTKNEDGVSMAA 126

Query: 124 FMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTI 183
            + +  DKV MESW  LKDAV+EGGIPFN+ +GM  FEY   +PRFN+ +++ M NHSTI
Sbjct: 127 LLLMNQDKVLMESWYHLKDAVLEGGIPFNKAYGMTAFEYHGKDPRFNKVFNQGMSNHSTI 186

Query: 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVE 243
            M++ILE Y+GFQ ++ +VDVGGG G TL+MI SKYP IK +NFDLPHV++DAPSY GV+
Sbjct: 187 IMKKILEIYQGFQGLKTVVDVGGGTGATLNMIVSKYPSIKGINFDLPHVIEDAPSYPGVD 246

Query: 244 HVGGNMFESVPEGDAILMK 262
           HVGG+MF SVP+GDAI MK
Sbjct: 247 HVGGDMFVSVPKGDAIFMK 265

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Catharanthus roseus (taxid: 4058)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q9XGV9|COMT2_OCIBA Caffeic acid 3-O-methyltransferase 2 OS=Ocimum basilicum GN=COMT2 PE=2 SV=1

 Score =  288 bits (738), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 140/251 (55%), Positives = 180/251 (71%), Gaps = 8/251 (3%)

Query: 20  EEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE---LSAPEIAAQLQAQNVKAP 76
           +EEE++  AMQLA   VLPM  ++AI+L + E+I KAG    +S  E+AAQL   N +A 
Sbjct: 13  DEEENFLFAMQLASASVLPMVLKSAIELDLLELIKKAGAGAFVSPAELAAQLLTTNAEAH 72

Query: 77  MMLDRMLRLLVSHRVLECSVS-----GGERLYALNPVSKYFVSNKDGASLGHFMALPLDK 131
           +MLDR+LRLL S+ +LEC +      G +RLY L PV K+   N+DG S+     +  DK
Sbjct: 73  VMLDRILRLLTSYAILECRLKTLPDGGVQRLYGLAPVCKFLTKNEDGVSMAPLALMNQDK 132

Query: 132 VFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEH 191
           V MESW  LKDAV++GGIPFN+ +GM  FEY   +PRFN+ +++ M NHSTI M++ILE 
Sbjct: 133 VLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNQGMSNHSTITMKKILET 192

Query: 192 YEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFE 251
           Y GF  ++ +VDVGGG G TL+MI SKYP IK +NFDLPHVV+DAPSY GVEHVGG+MF 
Sbjct: 193 YTGFDGLKTVVDVGGGTGATLNMIISKYPSIKGINFDLPHVVEDAPSYPGVEHVGGDMFV 252

Query: 252 SVPEGDAILMK 262
           SVP+GDAI MK
Sbjct: 253 SVPKGDAIFMK 263

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Ocimum basilicum (taxid: 39350)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q9FK25|OMT1_ARATH Flavone 3'-O-methyltransferase 1 OS=Arabidopsis thaliana GN=OMT1 PE=1 SV=1

 Score =  288 bits (737), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 141/268 (52%), Positives = 186/268 (69%), Gaps = 11/268 (4%)

Query: 1   MGSLSEYQKLAQKKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELS 60
           MGS +E Q         +  ++E+   AMQLA   VLPMA ++A++L + EI+AK G   
Sbjct: 1   MGSTAETQLTPV-----QVTDDEAALFAMQLASASVLPMALKSALELDLLEIMAKNGSPM 55

Query: 61  AP-EIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV-----SGGERLYALNPVSKYFVS 114
           +P EIA++L  +N +AP+MLDR+LRLL S+ VL CS       G ER+Y L PV KY   
Sbjct: 56  SPTEIASKLPTKNPEAPVMLDRILRLLTSYSVLTCSNRKLSGDGVERIYGLGPVCKYLTK 115

Query: 115 NKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYH 174
           N+DG S+     +  DKV MESW  LKDA+++GGIPFN+ +GM  FEY   +PRFN+ ++
Sbjct: 116 NEDGVSIAALCLMNQDKVLMESWYHLKDAILDGGIPFNKAYGMSAFEYHGTDPRFNKVFN 175

Query: 175 EAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQ 234
             M NHSTI M++ILE Y+GF+ +  LVDVGGG G TL MI SKYP +K +NFDLPHV++
Sbjct: 176 NGMSNHSTITMKKILETYKGFEGLTSLVDVGGGIGATLKMIVSKYPNLKGINFDLPHVIE 235

Query: 235 DAPSYAGVEHVGGNMFESVPEGDAILMK 262
           DAPS+ G+EHVGG+MF SVP+GDAI MK
Sbjct: 236 DAPSHPGIEHVGGDMFVSVPKGDAIFMK 263

Methylates OH residues of flavonoid compounds. Substrate preference is quercetin > myricetin >> luteolin. Dihydroquercetin is not a substrate.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 6

>sp|Q8LL87|COMT1_COFCA Caffeic acid 3-O-methyltransferase OS=Coffea canephora PE=2 SV=1

 Score =  287 bits (734), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 139/250 (55%), Positives = 182/250 (72%), Gaps = 8/250 (3%)

Query: 21  EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE---LSAPEIAAQLQAQNVKAPM 77
           EEE+   AM LA   VLPM  ++AI+L + E+IAKAG    +S  E+AAQL   N +AP+
Sbjct: 3   EEEACLFAMSLASASVLPMVLKSAIELDLLELIAKAGPGAYVSPSELAAQLPTHNPEAPI 62

Query: 78  MLDRMLRLLVSHRVLECSVS-----GGERLYALNPVSKYFVSNKDGASLGHFMALPLDKV 132
           MLDR+LRLL ++ VL+C ++     G ERLY L PV K+   N DG S+   + +  DKV
Sbjct: 63  MLDRILRLLATYSVLDCKLNNLADGGVERLYGLAPVCKFLTKNADGVSMAPLLLMNQDKV 122

Query: 133 FMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHY 192
            MESW  LKDAV++GGIPFN+ +GM  FEY   +PRFN+ +++ M NHSTI M++ILE Y
Sbjct: 123 LMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNQGMSNHSTITMKKILEVY 182

Query: 193 EGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFES 252
            GF+ ++ +VDVGGG G TL+MI SKYP IK +NF+LPHVV+DAPS++GVEHVGG+MF S
Sbjct: 183 RGFEGLKTVVDVGGGTGATLNMIISKYPTIKGINFELPHVVEDAPSHSGVEHVGGDMFVS 242

Query: 253 VPEGDAILMK 262
           VP+GDAI MK
Sbjct: 243 VPKGDAIFMK 252

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Coffea canephora (taxid: 49390)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q9XGW0|COMT1_OCIBA Caffeic acid 3-O-methyltransferase 1 OS=Ocimum basilicum GN=COMT1 PE=2 SV=1

 Score =  283 bits (725), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 137/251 (54%), Positives = 178/251 (70%), Gaps = 8/251 (3%)

Query: 20  EEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE---LSAPEIAAQLQAQNVKAP 76
           +EEE++  AMQLA   VLPM  ++AI+L + E+I K+G    +S  ++AAQL   N  A 
Sbjct: 13  DEEENFLFAMQLASASVLPMVLKSAIELDLLELIKKSGAGAFVSPVDLAAQLPTTNPDAH 72

Query: 77  MMLDRMLRLLVSHRVLECSVS-----GGERLYALNPVSKYFVSNKDGASLGHFMALPLDK 131
           +MLDR+LRLL S+ +LEC +      G ERLY L PV K+   N+DG S+     +  DK
Sbjct: 73  VMLDRILRLLTSYAILECRLKTLPDGGVERLYGLAPVCKFLTKNEDGVSMAPLTLMNQDK 132

Query: 132 VFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEH 191
           V MESW  L DAV++GGIPFN+ +GM  FEY   +PRFN+ +++ M NHSTI M++ILE 
Sbjct: 133 VLMESWYHLSDAVVDGGIPFNKAYGMTAFEYHGTDPRFNKVFNQGMSNHSTITMKKILET 192

Query: 192 YEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFE 251
           Y GF  ++ +VDVGGG G TL+MI SKYP IK +NFDLPHV++DAPSY GVEHVGG+MF 
Sbjct: 193 YTGFDGLKTVVDVGGGTGATLNMIVSKYPSIKGINFDLPHVIEDAPSYPGVEHVGGDMFV 252

Query: 252 SVPEGDAILMK 262
           SVP+GDAI MK
Sbjct: 253 SVPKGDAIFMK 263

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Ocimum basilicum (taxid: 39350)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q6T1F5|COMT1_AMMMJ Caffeic acid 3-O-methyltransferase OS=Ammi majus GN=COMT PE=1 SV=1

 Score =  283 bits (723), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 136/252 (53%), Positives = 179/252 (71%), Gaps = 8/252 (3%)

Query: 19  EEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE---LSAPEIAAQLQAQNVKA 75
           ++EEE+   AMQLA   VLPM  ++AI+L + E IAKAG    +S  ++AA L +     
Sbjct: 16  DDEEEACMFAMQLASASVLPMVLKSAIELNLLESIAKAGPGAYVSPSQLAAALPSSQPDT 75

Query: 76  PMMLDRMLRLLVSHRVLECSV-----SGGERLYALNPVSKYFVSNKDGASLGHFMALPLD 130
           P+MLDR+LRLL S+ VL C +     +  ERLY L PV K+   N DG S+   + +  D
Sbjct: 76  PVMLDRILRLLASYSVLNCKLRDLPDARVERLYGLAPVCKFLTKNSDGVSMAPLLLMNQD 135

Query: 131 KVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILE 190
           K+ MESW  LKDAV++GGIPFN+ +GM  FEY   +PRFN+ +++ M NHSTI M++IL+
Sbjct: 136 KILMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGKDPRFNKVFNQGMSNHSTITMKKILQ 195

Query: 191 HYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMF 250
            Y+GF  ++ +VDVGGG G TL+MI SKYP +K +NFDLPHVV+DAPSYAGVEHVGG+MF
Sbjct: 196 TYDGFGGLKTVVDVGGGTGATLNMIISKYPNLKGINFDLPHVVEDAPSYAGVEHVGGDMF 255

Query: 251 ESVPEGDAILMK 262
            SVP+GDAI MK
Sbjct: 256 VSVPKGDAIFMK 267

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Ammi majus (taxid: 48026)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|P46484|COMT1_EUCGU Caffeic acid 3-O-methyltransferase OS=Eucalyptus gunnii GN=OMT PE=2 SV=1

 Score =  282 bits (721), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 138/250 (55%), Positives = 178/250 (71%), Gaps = 8/250 (3%)

Query: 21  EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE---LSAPEIAAQLQAQNVKAPM 77
           +EE+   AMQLA   VLPM  +AAI+L + EI+AKAG    LS  E+AAQL  QN +AP+
Sbjct: 17  DEEANLFAMQLASASVLPMVLKAAIELDLLEIMAKAGPGAFLSPGEVAAQLPTQNPEAPV 76

Query: 78  MLDRMLRLLVSHRVLECSVSG-----GERLYALNPVSKYFVSNKDGASLGHFMALPLDKV 132
           MLDR+ RLL S+ VL C++        ERLY L PV K+ V N+DG S+     +  DK+
Sbjct: 77  MLDRIFRLLASYSVLTCTLRNLPDGKVERLYGLAPVCKFLVKNEDGVSIAALNLMNQDKI 136

Query: 133 FMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHY 192
            MESW  LKDAV+EGGIPFN+ +GM  FEY   +PRFN+ ++  M +HSTI M++ILE Y
Sbjct: 137 LMESWYYLKDAVLEGGIPFNKAYGMTAFEYHGTDPRFNKIFNRGMSDHSTITMKKILETY 196

Query: 193 EGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFES 252
           +GF+ +E +VDVGGG G  LSMI +KYP +K +NFDLPHV++DAP   GV+HVGG+MF S
Sbjct: 197 KGFEGLETVVDVGGGTGAVLSMIVAKYPSMKGINFDLPHVIEDAPPLPGVKHVGGDMFVS 256

Query: 253 VPEGDAILMK 262
           VP+GDAI MK
Sbjct: 257 VPKGDAIFMK 266

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Eucalyptus gunnii (taxid: 3933)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q43046|COMT1_POPKI Caffeic acid 3-O-methyltransferase 1 OS=Populus kitakamiensis GN=HOMT1 PE=3 SV=1

 Score =  280 bits (717), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 140/270 (51%), Positives = 181/270 (67%), Gaps = 13/270 (4%)

Query: 1   MGSLSEYQKLAQKKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE-- 58
           MGS  E Q         +  +EE++  AMQLA   VLPM  + AI+L + EI+AKAG   
Sbjct: 1   MGSTGETQMTPT-----QVSDEEAHLFAMQLASASVLPMILKTAIELDLLEIMAKAGPGA 55

Query: 59  -LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG-----GERLYALNPVSKYF 112
            LS  EIA+ L  +N  AP+MLDR+LRLL S+ +L CS+        ERLY L PV K+ 
Sbjct: 56  FLSTSEIASHLPTKNPDAPVMLDRILRLLASYSILTCSLKDLPDGKVERLYGLAPVCKFL 115

Query: 113 VSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNET 172
             N+DG S+     +  DKV MESW  LKDA++EGGIPFN+ +GM  FEY   +PRFN+ 
Sbjct: 116 TKNEDGVSVSPLCLMNQDKVLMESWYYLKDAILEGGIPFNKAYGMTAFEYHGTDPRFNKV 175

Query: 173 YHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHV 232
           +++ M +HSTI M++ILE Y+GF+ +  LVDVGGG G  ++ I SKYP IK +NFDLPHV
Sbjct: 176 FNKGMSDHSTITMKKILETYKGFEGLTSLVDVGGGTGAVVNTIVSKYPSIKGINFDLPHV 235

Query: 233 VQDAPSYAGVEHVGGNMFESVPEGDAILMK 262
           ++DAPSY GVEHVGG+MF SVP  DA+ MK
Sbjct: 236 IEDAPSYPGVEHVGGDMFVSVPNADAVFMK 265

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Populus kitakamiensis (taxid: 34292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q00763|COMT1_POPTM Caffeic acid 3-O-methyltransferase 1 OS=Populus tremuloides GN=OMT1 PE=1 SV=1

 Score =  280 bits (716), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 139/270 (51%), Positives = 182/270 (67%), Gaps = 13/270 (4%)

Query: 1   MGSLSEYQKLAQKKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE-- 58
           MGS  E Q         +  +EE++  AMQLA   VLPM  + AI+L + EI+AKAG   
Sbjct: 1   MGSTGETQMTPT-----QVSDEEAHLFAMQLASASVLPMILKTAIELDLLEIMAKAGPGA 55

Query: 59  -LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG-----GERLYALNPVSKYF 112
            LS  EIA+ L  +N  AP+MLDR+LRLL S+ +L CS+        ERLY L PV K+ 
Sbjct: 56  FLSTSEIASHLPTKNPDAPVMLDRILRLLASYSILTCSLKDLPDGKVERLYGLAPVCKFL 115

Query: 113 VSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNET 172
             N+DG S+     +  DKV MESW  LKDA+++GGIPFN+ +GM  FEY   +PRFN+ 
Sbjct: 116 TKNEDGVSVSPLCLMNQDKVLMESWYYLKDAILDGGIPFNKAYGMTAFEYHGTDPRFNKV 175

Query: 173 YHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHV 232
           +++ M +HSTI M++ILE Y+GF+ +  LVDVGGG G  ++ I SKYP IK +NFDLPHV
Sbjct: 176 FNKGMSDHSTITMKKILETYKGFEGLTSLVDVGGGTGAVVNTIVSKYPSIKGINFDLPHV 235

Query: 233 VQDAPSYAGVEHVGGNMFESVPEGDAILMK 262
           ++DAPSY GVEHVGG+MF SVP+ DA+ MK
Sbjct: 236 IEDAPSYPGVEHVGGDMFVSVPKADAVFMK 265

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Populus tremuloides (taxid: 3693)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	273
342161927	364	RecName: Full=Anthranilate N-methyltrans	0.959	0.719	0.789	1e-113
225453640	359	PREDICTED: quercetin 3-O-methyltransfera	0.952	0.724	0.593	1e-87
224128073	358	catechol o-methyltransferase related [Po	0.897	0.684	0.612	2e-86
147785075	382	hypothetical protein VITISV_028012 [Viti	0.893	0.638	0.589	4e-82
225453636	358	PREDICTED: quercetin 3-O-methyltransfera	0.893	0.681	0.589	5e-82
255548061	359	o-methyltransferase, putative [Ricinus c	0.915	0.696	0.590	6e-82
224068173	359	catechol o-methyltransferase [Populus tr	0.897	0.682	0.580	1e-81
145695037	353	O-methyltransferase [Citrus sinensis x C	0.890	0.688	0.564	1e-80
357512657	362	Caffeic acid 3-O-methyltransferase [Medi	0.904	0.682	0.564	2e-80
388494808	362	unknown [Medicago truncatula]	0.904	0.682	0.564	3e-80

>gi|342161927|sp|A9X7L0.1|ANMT_RUTGR RecName: Full=Anthranilate N-methyltransferase; Short=RgANMT gi|115315700|gb|ABI93949.1| anthranilate N-methyltransferase [Ruta graveolens]

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 210/266 (78%), Positives = 232/266 (87%), Gaps = 4/266 (1%)

Query: 1   MGSLSEYQKLAQKKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA--GE 58
           MGSLSE     +   E EE+EEESYS AMQL+M +VLPMATQ+AIQLGVFEIIAKA  G 
Sbjct: 1   MGSLSESHTQYKHGVEVEEDEEESYSRAMQLSMAIVLPMATQSAIQLGVFEIIAKAPGGR 60

Query: 59  LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG--GERLYALNPVSKYFVSNK 116
           LSA EIA  LQAQN KAP+MLDRMLRLLVSHRVL+CSVSG  GERLY L  VSKYFV ++
Sbjct: 61  LSASEIATILQAQNPKAPVMLDRMLRLLVSHRVLDCSVSGPAGERLYGLTSVSKYFVPDQ 120

Query: 117 DGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEA 176
           DGASLG+FMALPLDKVFMESW+G+K AVMEGGIPFNRVHGMHIFEYAS N +F++TYH A
Sbjct: 121 DGASLGNFMALPLDKVFMESWMGVKGAVMEGGIPFNRVHGMHIFEYASSNSKFSDTYHRA 180

Query: 177 MFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDA 236
           MFNHSTIA++RILEHY+GF+NV +LVDVGGG GVTLSMI SKYP I+A+NFDLPHVVQDA
Sbjct: 181 MFNHSTIALKRILEHYKGFENVTKLVDVGGGLGVTLSMIASKYPHIQAINFDLPHVVQDA 240

Query: 237 PSYAGVEHVGGNMFESVPEGDAILMK 262
            SY GVEHVGGNMFESVPEGDAILMK
Sbjct: 241 ASYPGVEHVGGNMFESVPEGDAILMK 266

Source: Ruta graveolens

Species: Ruta graveolens

Genus: Ruta

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453640|ref|XP_002267179.1| PREDICTED: quercetin 3-O-methyltransferase 1 isoform 1 [Vitis vinifera] gi|147785074|emb|CAN75449.1| hypothetical protein VITISV_028011 [Vitis vinifera]

 Score =  328 bits (842), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 156/263 (59%), Positives = 204/263 (77%), Gaps = 3/263 (1%)

Query: 1   MGSLSEYQKLAQKKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELS 60
           MGS +E ++ ++  HE+ + E  SY  AMQL    VLPM  Q +I+LG+F+IIAK G+ S
Sbjct: 1   MGSSAEEKQSSRLCHEDGDVEPCSY--AMQLVTSSVLPMVMQTSIELGLFDIIAKLGQAS 58

Query: 61  APEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS-VSGGERLYALNPVSKYFVSNKDGA 119
           A EIA++L  +N +AP+MLDRML LL +H VL CS + G ER+YAL PVSKYF SN+DG 
Sbjct: 59  ASEIASRLPTKNPEAPIMLDRMLYLLTTHSVLSCSAIDGDERVYALTPVSKYFASNQDGV 118

Query: 120 SLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFN 179
           S G  +AL  DKVFM+SW  LK+A++EGGIPFNRVHG H FEY   +PRFN+ ++ AMFN
Sbjct: 119 SFGPLLALIQDKVFMDSWSQLKNAIIEGGIPFNRVHGSHAFEYPGKDPRFNQVFNTAMFN 178

Query: 180 HSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY 239
           H+TI + +ILE Y+GF+++ R+VDVGGG G TLS+ITSKYP I+A+NFDLPHV++ A ++
Sbjct: 179 HTTIIVNKILESYKGFEHLTRVVDVGGGLGTTLSIITSKYPHIEAINFDLPHVIEHAVAF 238

Query: 240 AGVEHVGGNMFESVPEGDAILMK 262
            GVEH+GG+MFESVP+GDAI MK
Sbjct: 239 PGVEHIGGDMFESVPKGDAIFMK 261

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128073|ref|XP_002320237.1| catechol o-methyltransferase related [Populus trichocarpa] gi|118481911|gb|ABK92890.1| unknown [Populus trichocarpa] gi|222861010|gb|EEE98552.1| catechol o-methyltransferase related [Populus trichocarpa]

 Score =  325 bits (832), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 152/248 (61%), Positives = 196/248 (79%), Gaps = 3/248 (1%)

Query: 18  EEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAG---ELSAPEIAAQLQAQNVK 74
           +E ++E++ +AMQLA+  VLPM   +AIQLG+FEIIAKAG   +LSA ++AAQL  +N  
Sbjct: 13  DEAKDENFGYAMQLALSSVLPMTMYSAIQLGIFEIIAKAGPDAKLSASDVAAQLPTKNPD 72

Query: 75  APMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFM 134
           APMMLDR+LRLL SH VL CSV G ERLY+L PVSK++V NKDG SLG FMAL  D VF+
Sbjct: 73  APMMLDRILRLLASHDVLGCSVDGSERLYSLAPVSKHYVRNKDGVSLGPFMALIQDNVFL 132

Query: 135 ESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEG 194
           +SW  LKDAV+EGG+ F+RVHG H FEY   +PRFN+ ++ AM+N +T+ +E +LE Y G
Sbjct: 133 QSWSQLKDAVLEGGVAFDRVHGAHAFEYPGLDPRFNQVFNTAMYNQTTVVLENMLEAYTG 192

Query: 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVP 254
           F+N+++LV++GGG G T+  I SKYPQIK +NFDLPHV++ APS  GVEHVGG+MFESVP
Sbjct: 193 FKNLKQLVEIGGGMGHTIKAIISKYPQIKGINFDLPHVIEHAPSCPGVEHVGGDMFESVP 252

Query: 255 EGDAILMK 262
           +GDAI +K
Sbjct: 253 KGDAIFLK 260

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147785075|emb|CAN75450.1| hypothetical protein VITISV_028012 [Vitis vinifera]

 Score =  310 bits (794), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 145/246 (58%), Positives = 191/246 (77%), Gaps = 2/246 (0%)

Query: 18  EEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPM 77
           E+ + E  S+AMQL    VLPM  Q +I+LG+F+IIA  G+ SA EIA++L  +N +AP+
Sbjct: 16  EDGDVEPCSYAMQLVTSSVLPMVMQTSIELGLFDIIANLGQASASEIASRLPTKNQEAPI 75

Query: 78  MLDRMLRLLVSHRVLECS-VSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMES 136
           +LDRML LL +H VL CS + G ER+YAL PVSKYF SN+ G S G  +AL  DKVFM+S
Sbjct: 76  ILDRMLYLLTTHSVLSCSAIDGDERVYALTPVSKYFASNQ-GVSFGPLLALIQDKVFMDS 134

Query: 137 WLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQ 196
           W  LK+A++EGGIPFNRVHG H FEY   +PRFN+ ++ AMFNH+T+ + +ILE Y+GF+
Sbjct: 135 WSQLKNAIIEGGIPFNRVHGSHAFEYPGKDPRFNQVFNTAMFNHTTVIVNKILESYKGFE 194

Query: 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEG 256
           ++ R+VDVGGG G TLS+ITSKYP I+A+NFDLPHV++ A +Y GV+H+GG+MF SVP+G
Sbjct: 195 HLTRVVDVGGGLGTTLSIITSKYPHIEAINFDLPHVIEHAVAYPGVKHIGGDMFVSVPKG 254

Query: 257 DAILMK 262
           DAI MK
Sbjct: 255 DAIFMK 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453636|ref|XP_002266899.1| PREDICTED: quercetin 3-O-methyltransferase 1 isoform 1 [Vitis vinifera]

 Score =  310 bits (794), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 145/246 (58%), Positives = 191/246 (77%), Gaps = 2/246 (0%)

Query: 18  EEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPM 77
           E+ + E  S+AMQL    VLPM  Q +I+LG+F+IIA  G+ SA EIA++L  +N +AP+
Sbjct: 16  EDGDVEPCSYAMQLVTSSVLPMVMQTSIELGLFDIIANLGQASASEIASRLPTKNQEAPI 75

Query: 78  MLDRMLRLLVSHRVLECS-VSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMES 136
           +LDRML LL +H VL CS + G ER+YAL PVSKYF SN+ G S G  +AL  DKVFM+S
Sbjct: 76  ILDRMLYLLTTHSVLSCSAIDGDERVYALTPVSKYFASNQ-GVSFGPLLALIQDKVFMDS 134

Query: 137 WLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQ 196
           W  LK+A++EGGIPFNRVHG H FEY   +PRFN+ ++ AMFNH+T+ + +ILE Y+GF+
Sbjct: 135 WSQLKNAIIEGGIPFNRVHGSHAFEYPGKDPRFNQVFNTAMFNHTTVIVNKILESYKGFE 194

Query: 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEG 256
           ++ R+VDVGGG G TLS+ITSKYP I+A+NFDLPHV++ A +Y GV+H+GG+MF SVP+G
Sbjct: 195 HLTRVVDVGGGLGTTLSIITSKYPHIEAINFDLPHVIEHAVAYPGVKHIGGDMFVSVPKG 254

Query: 257 DAILMK 262
           DAI MK
Sbjct: 255 DAIFMK 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548061|ref|XP_002515087.1| o-methyltransferase, putative [Ricinus communis] gi|223545567|gb|EEF47071.1| o-methyltransferase, putative [Ricinus communis]

 Score =  310 bits (793), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 150/254 (59%), Positives = 194/254 (76%), Gaps = 4/254 (1%)

Query: 13  KKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAG---ELSAPEIAAQL- 68
           + H  +EE +E++ +AMQLA+G  LPM+  AAI+LGVFEIIAKAG   +LSA EI A++ 
Sbjct: 8   RLHPIDEEHDENFGYAMQLALGSALPMSLHAAIELGVFEIIAKAGPESKLSASEITAEIP 67

Query: 69  QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALP 128
             QN  A + LDR+LRLL SH VL CS++G ERLY+LNPVSKYFV N+DG SLG FMAL 
Sbjct: 68  DVQNPDAAITLDRVLRLLASHNVLGCSLNGLERLYSLNPVSKYFVPNQDGISLGPFMALI 127

Query: 129 LDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERI 188
            DKVF++SW  LKDAV+EGG PFN+ HG H F Y+  + RFN  ++ AMF+H+ + + +I
Sbjct: 128 QDKVFLDSWTKLKDAVLEGGSPFNKFHGTHCFGYSGLDSRFNHVFNTAMFHHTNLVITKI 187

Query: 189 LEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGN 248
           LE Y+GF+ +++L+DVGGG G TL  I SKYP +K +NFDLPHVV+ AP+  GVEHV G+
Sbjct: 188 LETYKGFKQLKQLIDVGGGLGHTLKAIISKYPHLKGINFDLPHVVKYAPAIPGVEHVAGD 247

Query: 249 MFESVPEGDAILMK 262
           MFESVP+G+AI MK
Sbjct: 248 MFESVPKGEAIFMK 261

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068173|ref|XP_002302676.1| catechol o-methyltransferase [Populus trichocarpa] gi|222844402|gb|EEE81949.1| catechol o-methyltransferase [Populus trichocarpa]

 Score =  308 bits (790), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 144/248 (58%), Positives = 189/248 (76%), Gaps = 3/248 (1%)

Query: 18  EEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAG---ELSAPEIAAQLQAQNVK 74
           +E ++E++ +AMQLA+  VLPM    AIQLG+FEIIAKAG   +LSA +IAA+L   N  
Sbjct: 13  DEAKDENFGYAMQLALSSVLPMTLHTAIQLGIFEIIAKAGPDVKLSAADIAAKLPTDNPD 72

Query: 75  APMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFM 134
            P MLDR+LRLL SH+VL C V G ER Y+L PVS YFV N++G SL  FMAL  + V +
Sbjct: 73  TPKMLDRILRLLASHQVLCCFVDGSERFYSLAPVSMYFVRNQNGVSLAPFMALIHENVIL 132

Query: 135 ESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEG 194
           +SW  LKDAV+EGG+ F+RVHG+H FEY   +PRFN+ ++ AM+N +T+    +LE Y G
Sbjct: 133 QSWSQLKDAVLEGGVAFHRVHGVHAFEYNGLDPRFNQVFNTAMYNQTTVVNGNMLEKYNG 192

Query: 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVP 254
           F+N+++LVD+GGG G T+  +TSKYPQIK +NFDLPHV++ AP+Y GVEHVGG+MFESVP
Sbjct: 193 FKNLKQLVDIGGGLGHTMKAVTSKYPQIKGINFDLPHVIEHAPAYPGVEHVGGDMFESVP 252

Query: 255 EGDAILMK 262
           +GDAI +K
Sbjct: 253 KGDAIFLK 260

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145695037|gb|ABP94018.1| O-methyltransferase [Citrus sinensis x Citrus reticulata]

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 140/248 (56%), Positives = 189/248 (76%), Gaps = 5/248 (2%)

Query: 20  EEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAG---ELSAPEIAAQLQAQNVKAP 76
           E ++S+++A QLAMG +LPMA Q   +LG+FEI+ K G   +L A +IAAQL  +N  AP
Sbjct: 8   ERDQSFAYANQLAMGTMLPMAIQTVYELGIFEILDKVGPGAKLCASDIAAQLLTKNKDAP 67

Query: 77  MMLDRMLRLLVSHRVLECSV--SGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFM 134
           MMLDR+LRLL S+ V+ECS+  SG  RLY+LN VSKY+V NKDG  LG  + +  DKVF+
Sbjct: 68  MMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVLLGPLIQIVQDKVFL 127

Query: 135 ESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEG 194
           +SW  LKDA++EGGIPFNR HG+H+FEY   +P+FN+ ++ AM+N++++ M  ILE Y+G
Sbjct: 128 KSWSQLKDAILEGGIPFNRAHGVHVFEYTGLDPKFNKHFNTAMYNYTSLVMSNILESYKG 187

Query: 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVP 254
           F N+++LVDVGG  G+TL  IT+KYP IK +NFD PHV+  AP +  +EHVGG+MF+SVP
Sbjct: 188 FDNIKQLVDVGGSLGITLQAITTKYPYIKGINFDQPHVIDHAPPHPRIEHVGGDMFQSVP 247

Query: 255 EGDAILMK 262
           +GDAI MK
Sbjct: 248 KGDAIFMK 255

Source: Citrus sinensis x Citrus reticulata

Species: Citrus sinensis x Citrus reticulata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357512657|ref|XP_003626617.1| Caffeic acid 3-O-methyltransferase [Medicago truncatula] gi|87240860|gb|ABD32718.1| O-methyltransferase, family 2; Dimerisation [Medicago truncatula] gi|355501632|gb|AES82835.1| Caffeic acid 3-O-methyltransferase [Medicago truncatula]

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 145/257 (56%), Positives = 194/257 (75%), Gaps = 10/257 (3%)

Query: 16  EEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE---LSAPEIAAQLQAQN 72
           ++E E+EES+S+A+QL+  +VL MA Q+AI+LGVFE++ KAG    LS+ EIA++L   N
Sbjct: 8   KQELEDEESFSYAVQLSNSIVLSMALQSAIELGVFEVLQKAGRDTPLSSDEIASRLSCTN 67

Query: 73  VKAPMMLDRMLRLLVSHRVLECSVSGGE-------RLYALNPVSKYFVSNKDGASLGHFM 125
             AP MLDR+L LL SH VL CSV   +       RLYA+  V+K+F  N DG SLG  +
Sbjct: 68  PDAPKMLDRILALLASHSVLNCSVHPDQHNLGSFHRLYAMTSVAKFFAPNSDGVSLGPLI 127

Query: 126 ALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAM 185
           AL  DK++++SW  LKDA+ EGGIPFNRV+G + FEYAS + RFN+ ++ AM NH+TI M
Sbjct: 128 ALHQDKIYLQSWSQLKDAIREGGIPFNRVYGTNDFEYASIDSRFNQVFNTAMINHTTIVM 187

Query: 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHV 245
            ++L+ Y+GF++V+RLVDVGGG GV +++ITSK+P I  +NFDLPHV+Q APSY GVEHV
Sbjct: 188 NKVLQSYKGFEDVKRLVDVGGGLGVNINLITSKHPHIHGINFDLPHVIQHAPSYPGVEHV 247

Query: 246 GGNMFESVPEGDAILMK 262
           GG+MFE+VP+ DAI MK
Sbjct: 248 GGDMFETVPKADAIFMK 264

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388494808|gb|AFK35470.1| unknown [Medicago truncatula]

 Score =  304 bits (778), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 145/257 (56%), Positives = 194/257 (75%), Gaps = 10/257 (3%)

Query: 16  EEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE---LSAPEIAAQLQAQN 72
           ++E E+EES+S+A+QL+  +VL MA Q+AI+LGVFE++ KAG    LS+ EIA++L   N
Sbjct: 8   KQELEDEESFSYAVQLSNSIVLSMALQSAIELGVFEVLQKAGRDTPLSSDEIASRLSCTN 67

Query: 73  VKAPMMLDRMLRLLVSHRVLECSVSGGE-------RLYALNPVSKYFVSNKDGASLGHFM 125
             AP MLDR+L LL SH VL CSV   +       RLYA+  V+K+F  N DG SLG  +
Sbjct: 68  PDAPKMLDRILALLASHSVLNCSVHPDQHNLGSFHRLYAMTSVAKFFAPNSDGVSLGPLI 127

Query: 126 ALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAM 185
           AL  DK++++SW  LKDA+ EGGIPFNRV+G + FEYAS + RFN+ ++ AM NH+TI M
Sbjct: 128 ALHQDKIYLQSWSQLKDAIREGGIPFNRVYGTNDFEYASIDSRFNQVFNTAMINHTTIVM 187

Query: 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHV 245
            ++L+ Y+GF++V+RLVDVGGG GV +++ITSK+P I  +NFDLPHV+Q APSY GVEHV
Sbjct: 188 NKVLQSYKGFEDVKRLVDVGGGLGVNVNLITSKHPHIHGINFDLPHVIQHAPSYPGVEHV 247

Query: 246 GGNMFESVPEGDAILMK 262
           GG+MFE+VP+ DAI MK
Sbjct: 248 GGDMFETVPKADAIFMK 264

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	273
TAIR|locus:2153423	363	OMT1 "AT5G54160" [Arabidopsis	0.860	0.647	0.564	2.4e-69
UNIPROTKB|Q84N28	360	OMT1 "Flavone O-methyltransfer	0.864	0.655	0.487	2.5e-58
UNIPROTKB|Q6ZD89	368	ROMT-9 "Flavone 3'-O-methyltra	0.864	0.641	0.460	3.4e-54
TAIR|locus:2204695	381	AT1G77530 [Arabidopsis thalian	0.860	0.616	0.468	1.5e-53
TAIR|locus:2204680	381	AT1G77520 [Arabidopsis thalian	0.835	0.598	0.485	7.2e-52
TAIR|locus:2164087	378	AT5G53810 [Arabidopsis thalian	0.857	0.619	0.452	4.6e-50
TAIR|locus:2199607	373	IGMT1 "indole glucosinolate O-	0.849	0.621	0.449	5.2e-49
TAIR|locus:2199587	373	IGMT2 "indole glucosinolate O-	0.849	0.621	0.449	6.7e-49
TAIR|locus:2199582	373	IGMT4 "indole glucosinolate O-	0.849	0.621	0.453	3.7e-48
TAIR|locus:2199597	373	IGMT3 "indole glucosinolate O-	0.849	0.621	0.437	6.9e-47

TAIR|locus:2153423 OMT1 "AT5G54160" [Arabidopsis thaliana (taxid:3702)]

 Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
 Identities = 136/241 (56%), Positives = 177/241 (73%)

Query:    28 AMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAP-EIAAQLQAQNVKAPMMLDRMLRLL 86
             AMQLA   VLPMA ++A++L + EI+AK G   +P EIA++L  +N +AP+MLDR+LRLL
Sbjct:    23 AMQLASASVLPMALKSALELDLLEIMAKNGSPMSPTEIASKLPTKNPEAPVMLDRILRLL 82

Query:    87 VSHRVLECS---VSGG--ERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLK 141
              S+ VL CS   +SG   ER+Y L PV KY   N+DG S+     +  DKV MESW  LK
Sbjct:    83 TSYSVLTCSNRKLSGDGVERIYGLGPVCKYLTKNEDGVSIAALCLMNQDKVLMESWYHLK 142

Query:   142 DAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERL 201
             DA+++GGIPFN+ +GM  FEY   +PRFN+ ++  M NHSTI M++ILE Y+GF+ +  L
Sbjct:   143 DAILDGGIPFNKAYGMSAFEYHGTDPRFNKVFNNGMSNHSTITMKKILETYKGFEGLTSL 202

Query:   202 VDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILM 261
             VDVGGG G TL MI SKYP +K +NFDLPHV++DAPS+ G+EHVGG+MF SVP+GDAI M
Sbjct:   203 VDVGGGIGATLKMIVSKYPNLKGINFDLPHVIEDAPSHPGIEHVGGDMFVSVPKGDAIFM 262

Query:   262 K 262
             K
Sbjct:   263 K 263

GO:0030744 "luteolin O-methyltransferase activity" evidence=IDA

GO:0030755 "quercetin 3-O-methyltransferase activity" evidence=IDA

GO:0033799 "myricetin 3'-O-methyltransferase activity" evidence=IDA

GO:0047763 "caffeate O-methyltransferase activity" evidence=ISS;IMP

GO:0051555 "flavonol biosynthetic process" evidence=IDA

GO:0009809 "lignin biosynthetic process" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|Q84N28 OMT1 "Flavone O-methyltransferase 1" [Triticum aestivum (taxid:4565)]

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 119/244 (48%), Positives = 163/244 (66%)

Query:    27 HAMQLAMGVVLPMATQAAIQLGVFE-IIAKAGELSAP-EIAAQLQAQ-NVKAPMMLDRML 83
             +A+QL    +LPM  + AI+LG+ E ++A  G+L  P E+AA+L +  N  A  M+DRML
Sbjct:    19 YALQLVSSSILPMTLKNAIELGLLETLVAAGGKLLTPAEVAAKLPSTANPAAADMVDRML 78

Query:    84 RLLVSHRVLECSVSGGE-----RLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWL 138
             RLL S+ V+ C++  G+     R Y   PV K+   N+DG S+     +  DKV MESW 
Sbjct:    79 RLLASYNVVSCTMEEGKDGRLSRRYRAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWY 138

Query:   139 GLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNV 198
              LKDAV++GGIPFN+ +GM  FEY   +PRFN  ++E M NHS I  +++LE Y+GF+ +
Sbjct:   139 YLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLEVYKGFEGL 198

Query:   199 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDA 258
               +VDVGGG G T+  IT+ YP IK +NFDLPHV+ +A  + GV HVGG+MF+ VP GDA
Sbjct:   199 GTIVDVGGGVGATVGAITAAYPAIKGINFDLPHVISEAQPFPGVTHVGGDMFQKVPSGDA 258

Query:   259 ILMK 262
             ILMK
Sbjct:   259 ILMK 262

GO:0009611 "response to wounding" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IDA

GO:0009751 "response to salicylic acid stimulus" evidence=IDA

GO:0042542 "response to hydrogen peroxide" evidence=IDA

UNIPROTKB|Q6ZD89 ROMT-9 "Flavone 3'-O-methyltransferase 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
 Identities = 116/252 (46%), Positives = 160/252 (63%)

Query:    27 HAMQLAMGVVLPMATQAAIQLGVFEII---------AKAGELSAPEIAAQLQAQ-NVKAP 76
             +A+QLA   +LPM  + AI+LG+ E +          KA  L+  E+A +L ++ N  A 
Sbjct:    19 YALQLASSSILPMTLKNAIELGLLETLQSAAVAGGGGKAALLTPAEVADKLPSKANPAAA 78

Query:    77 MMLDRMLRLLVSHRVLECSVSGG-----ERLYALNPVSKYFVSNKDGASLGHFMALPLDK 131
              M+DRMLRLL S+ V+ C +  G      R YA  PV K+   N+DG S+     +  DK
Sbjct:    79 DMVDRMLRLLASYNVVRCEMEEGADGKLSRRYAAAPVCKWLTPNEDGVSMAALALMNQDK 138

Query:   132 VFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEH 191
             V MESW  LKDAV++GGIPFN+ +GM  FEY   + RFN  ++E M NHS I  +++L+ 
Sbjct:   139 VLMESWYYLKDAVLDGGIPFNKAYGMTAFEYHGTDARFNRVFNEGMKNHSVIITKKLLDL 198

Query:   192 YEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFE 251
             Y GF     +VDVGGG G T++ + S++P I+ +N+DLPHV+ +AP + GVEHVGG+MF 
Sbjct:   199 YTGFDAASTVVDVGGGVGATVAAVVSRHPHIRGINYDLPHVISEAPPFPGVEHVGGDMFA 258

Query:   252 SVPEG-DAILMK 262
             SVP G DAILMK
Sbjct:   259 SVPRGGDAILMK 270

GO:0030744 "luteolin O-methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

TAIR|locus:2204695 AT1G77530 [Arabidopsis thaliana (taxid:3702)]

 Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
 Identities = 117/250 (46%), Positives = 158/250 (63%)

Query:    28 AMQLAMGVVLPMATQAAIQLGVFEIIAKAGE---LSAPEIAAQL--QAQNVKAPMMLDRM 82
             A  +   V  PM  +AA++LGV + IA A     LS  EIA  L  +  N +AP++LDRM
Sbjct:    33 AESIVNAVAFPMVLKAALELGVIDTIAAASNGTWLSPSEIAVSLPNKPTNPEAPVLLDRM 92

Query:    83 LRLLVSHRVLEC----SVSGG-----ERLYALNPVSKYFVSNKDGA-SLGHFMALPLDKV 132
             LRLLVSH +L+C    S   G     ER+YA  P+ KYF+ + DG+ SL   + L   +V
Sbjct:    93 LRLLVSHSILKCCMVESRENGQTGKIERVYAAEPICKYFLKDSDGSGSLSSLLLLLHSQV 152

Query:   133 FMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHY 192
              +++W  LKD ++EG   F+  H M +FEY S + +F++ +H AM   ST+ M+++LE Y
Sbjct:   153 ILKTWTNLKDVILEGKDAFSSAHDMRLFEYISSDDQFSKLFHRAMSESSTMVMKKVLEEY 212

Query:   193 EGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFES 252
              GF++V  LVDVGGG G  L +ITSKYP IK VNFDL  V+  AP Y GV+HV G+MF  
Sbjct:   213 RGFEDVNTLVDVGGGIGTILGLITSKYPHIKGVNFDLAQVLTQAPFYPGVKHVSGDMFIE 272

Query:   253 VPEGDAILMK 262
             VP+GDAI MK
Sbjct:   273 VPKGDAIFMK 282

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2204680 AT1G77520 [Arabidopsis thaliana (taxid:3702)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 118/243 (48%), Positives = 154/243 (63%)

Query:    35 VVLPMATQAAIQLGVFEIIAKAGE---LSAPEIAAQLQAQ--NVKAPMMLDRMLRLLVSH 89
             V  PM  +AA +LGV + IA AG    LS  EIA  L  +  N +AP++LDRML LLVSH
Sbjct:    40 VAFPMVLKAAFELGVIDTIAAAGNDTWLSPCEIACSLPTKPTNPEAPVLLDRMLSLLVSH 99

Query:    90 RVLECSV--SG--G-----ERLYALNPVSKYFVSNKDGA-SLGHFMALPLDKVFMESWLG 139
              +L+C +  +G  G     ER+YA  PV KYF+ + DG  SL     L   +VF ++W  
Sbjct:   100 SILKCRMIETGENGRTGKIERVYAAEPVCKYFLRDSDGTGSLVPLFMLLHTQVFFKTWTN 159

Query:   140 LKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVE 199
             LKD ++EG   FN  HGM IFEY + +  F E ++ AM   ST+ M+++L+ Y GF++V 
Sbjct:   160 LKDVILEGRDAFNSAHGMKIFEYINSDQPFAELFNRAMSEPSTMIMKKVLDVYRGFEDVN 219

Query:   200 RLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAI 259
              LVDVGGG G  L ++TSKYP IK VNFDL  V+  AP Y GVEHV G+MF  VP+GDA+
Sbjct:   220 TLVDVGGGNGTVLGLVTSKYPHIKGVNFDLAQVLTQAPFYPGVEHVSGDMFVEVPKGDAV 279

Query:   260 LMK 262
              MK
Sbjct:   280 FMK 282

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2164087 AT5G53810 [Arabidopsis thaliana (taxid:3702)]

 Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
 Identities = 114/252 (45%), Positives = 156/252 (61%)

Query:    28 AMQLAMGVVLPMATQAAIQLGVFEIIAKAGE----LSAPEIAAQLQAQ--NVKAPMMLDR 81
             A +LA     PM  +AA++LGV + I   G     LS  EIA +L  +  N++AP +LDR
Sbjct:    29 ARRLANAAASPMVLKAALELGVIDTITTVGGGDLWLSPSEIALRLPTKPCNLEAPALLDR 88

Query:    82 MLRLLVSHRVLECSV---SGG-----ERLYALNPVSKYFVSNKDGASLGHFMAL---PLD 130
             MLR LVSH VL+C       G     ER+YA  PV KY ++  D  S G F +L    L 
Sbjct:    89 MLRFLVSHSVLKCRTVIEENGQTGKVERVYAAEPVCKYLLNKSDDVS-GSFASLFMLDLS 147

Query:   131 KVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILE 190
              VF+++W  L+D ++EG   F+  HGM +FEY   + RF + ++ AM   ST+  E++L+
Sbjct:   148 DVFIKTWTHLEDVILEGRDAFSSAHGMKLFEYIQADERFGKVFNRAMLESSTMVTEKVLK 207

Query:   191 HYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMF 250
              YEGF++V+ LVDVGGG G TL +ITSKYP +  +NFDL  V+ +A SY GV HV G+MF
Sbjct:   208 FYEGFKDVKTLVDVGGGLGNTLGLITSKYPHLIGINFDLAPVLANAHSYPGVNHVAGDMF 267

Query:   251 ESVPEGDAILMK 262
               +P+GDAI MK
Sbjct:   268 IKIPKGDAIFMK 279

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2199607 IGMT1 "indole glucosinolate O-methyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 112/249 (44%), Positives = 164/249 (65%)

Query:    28 AMQLAMGVVLPMATQAAIQLGVFEIIAKAGE-----LSAPEIAAQLQA--QNVKAPMMLD 80
             A++LA     PM  +AA++LGVF+ +  A       LS  EIA++L    +N +AP++LD
Sbjct:    29 AVRLANAAAFPMVLKAALELGVFDTLYAAASRTDSFLSPYEIASKLPTTPRNPEAPVLLD 88

Query:    81 RMLRLLVSHRVLEC--SVSG-GERLYALNPVSKYFVSN--KDGASLGHFMALPLDKVFME 135
             RMLRLL S+ +++C  ++SG GER+Y   P+ ++F+ +  +D  SL   + +  D VF+ 
Sbjct:    89 RMLRLLASYSMVKCGKALSGKGERVYRAEPICRFFLKDNIQDIGSLASQVIVNFDSVFLN 148

Query:   136 SWLGLKDAVMEGGIPFNRVHG-MHIFEYASGNPRFNETYHEAMFNHSTIAM-ERILEHYE 193
             +W  LKD V+EGG  F R HG M +F+Y   + RF++ +++  F   TIA+ ++ LE YE
Sbjct:   149 TWAQLKDVVLEGGDAFGRAHGGMKLFDYMGTDERFSKLFNQTGF---TIAVVKKALEVYE 205

Query:   194 GFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESV 253
             GF+ V+ LVDVGGG G TL ++TSKYP IK +NFDL   +  APSY GVEHV G+MF  V
Sbjct:   206 GFKGVKVLVDVGGGVGNTLGVVTSKYPNIKGINFDLTCALAQAPSYPGVEHVAGDMFVDV 265

Query:   254 PEGDAILMK 262
             P GDA+++K
Sbjct:   266 PTGDAMILK 274

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA;IDA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0042343 "indole glucosinolate metabolic process" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2199587 IGMT2 "indole glucosinolate O-methyltransferase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 112/249 (44%), Positives = 162/249 (65%)

Query:    28 AMQLAMGVVLPMATQAAIQLGVFEII-AKAGE----LSAPEIAAQLQA--QNVKAPMMLD 80
             A++LA     PM  +A+++LGVF+ + A+A      LS  EIA++L    +N  AP++LD
Sbjct:    29 AVRLANAAAFPMVLKASLELGVFDTLYAEASRTDSFLSPSEIASKLPTTPRNPGAPVLLD 88

Query:    81 RMLRLLVSHRVLEC---SVSGGERLYALNPVSKYFVSN--KDGASLGHFMALPLDKVFME 135
             RMLRLL S+ +++C   SV  GER+Y   P+ ++F+ N  +D  SL   + +  D VF+ 
Sbjct:    89 RMLRLLASYSMVKCEKVSVGKGERVYRAEPICRFFLKNNIQDIGSLASQVIVNFDSVFLN 148

Query:   136 SWLGLKDAVMEGGIPFNRVHG-MHIFEYASGNPRFNETYHEAMFNHSTIAM-ERILEHYE 193
             +W  LKD V+EGG  F R HG M +F+Y   + RF++ +++  F   TIA+ ++ LE Y+
Sbjct:   149 TWAQLKDVVLEGGDAFGRAHGGMKLFDYMGTDERFSKLFNQTGF---TIAVVKKALEVYQ 205

Query:   194 GFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESV 253
             GF+ V  LVDVGGG G TL ++TSKYP IK +NFDL   +  APSY GVEHV G+MF  V
Sbjct:   206 GFKGVNVLVDVGGGVGNTLGVVTSKYPNIKGINFDLTCALAQAPSYPGVEHVAGDMFVDV 265

Query:   254 PEGDAILMK 262
             P GDA+++K
Sbjct:   266 PTGDAMILK 274

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA;IDA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0042343 "indole glucosinolate metabolic process" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2199582 IGMT4 "indole glucosinolate O-methyltransferase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 113/249 (45%), Positives = 163/249 (65%)

Query:    28 AMQLAMGVVLPMATQAAIQLGVFEII-AKAGE----LSAPEIAAQLQA--QNVKAPMMLD 80
             A++LA     PM  +AA++LGVF+ + A+A      LS  EIA++L    +N +AP++LD
Sbjct:    29 AVRLANAAAFPMVLKAALELGVFDTLYAEASRSDSFLSPSEIASKLPTTPRNPEAPVLLD 88

Query:    81 RMLRLLVSHRVLECS-VS-G-GERLYALNPVSKYFVSN--KDGASLGHFMALPLDKVFME 135
             RMLRLL S+ V++C  VS G GER+Y   P+ ++F+ +  +D  SL   + +  D VF+ 
Sbjct:    89 RMLRLLASYSVVKCGKVSEGKGERVYRAEPICRFFLKDNIQDIGSLASQVIVNFDSVFLN 148

Query:   136 SWLGLKDAVMEGGIPFNRVHG-MHIFEYASGNPRFNETYHEAMFNHSTIAM-ERILEHYE 193
             +W  LKD V+EGG  F R HG M +F+Y   + RF++ +++  F   TIA+ ++ LE Y+
Sbjct:   149 TWAQLKDVVLEGGDAFGRAHGGMKLFDYMGTDERFSKLFNQTGF---TIAVVKKALEVYQ 205

Query:   194 GFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESV 253
             GF+ V  LVDVGGG G TL ++ SKYP IK +NFDL   +  APSY GVEHV G+MF  V
Sbjct:   206 GFKGVNVLVDVGGGVGNTLGVVASKYPNIKGINFDLTCALAQAPSYPGVEHVAGDMFVDV 265

Query:   254 PEGDAILMK 262
             P GDA+++K
Sbjct:   266 PTGDAMILK 274

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2199597 IGMT3 "indole glucosinolate O-methyltransferase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 109/249 (43%), Positives = 162/249 (65%)

Query:    28 AMQLAMGVVLPMATQAAIQLGVFEII-AKAGE----LSAPEIAAQLQA--QNVKAPMMLD 80
             A++LA     PM  +A+++LGVF+ + A+A      LS  EIA++L    +N  AP++LD
Sbjct:    29 AVRLANAAAFPMVLKASLELGVFDTLYAEASRTDSFLSPSEIASKLPTTPRNPGAPVLLD 88

Query:    81 RMLRLLVSHRVLECS-VSGG--ERLYALNPVSKYFVSN--KDGASLGHFMALPLDKVFME 135
             RMLRLL S+ +++C  VS G  +R+Y   P+ ++F+ N  +D  SL   + +  D VF+ 
Sbjct:    89 RMLRLLASYSMVKCEKVSVGKEQRVYRAEPICRFFLKNNIQDIGSLASQVIVNFDSVFLN 148

Query:   136 SWLGLKDAVMEGGIPFNRVHG-MHIFEYASGNPRFNETYHEAMFNHSTIAM-ERILEHYE 193
             +W  LKD V+EGG  F R HG M +F+Y   + RF++ +++  F   TIA+ ++ LE Y+
Sbjct:   149 TWAQLKDVVLEGGDAFGRAHGGMKLFDYMGTDERFSKLFNQTGF---TIAVVKKALEVYQ 205

Query:   194 GFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESV 253
             GF+ V  LVDVGGG G TL ++TSKYP IK +NFDL   +  AP+Y GVEHV G+MF  V
Sbjct:   206 GFKGVNVLVDVGGGVGNTLGVVTSKYPNIKGINFDLTCALAQAPTYPGVEHVAGDMFVDV 265

Query:   254 PEGDAILMK 262
             P G+A+++K
Sbjct:   266 PTGNAMILK 274

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A9X7L0	ANMT_RUTGR	2, ., 1, ., 1, ., 1, 1, 1	0.7894	0.9597	0.7197	N/A	no
Q9FK25	OMT1_ARATH	2, ., 1, ., 1, ., 7, 6	0.5261	0.9413	0.7079	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	273
pfam00891	239	pfam00891, Methyltransf_2, O-methyltransferase	1e-73
pfam08100	50	pfam08100, Dimerisation, Dimerisation domain	2e-15
TIGR02716	306	TIGR02716, C20_methyl_CrtF, C-20 methyltransferase	5e-05
PRK00137	147	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	4e-04

>gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase

 Score =  224 bits (574), Expect = 1e-73
 Identities = 81/164 (49%), Positives = 97/164 (59%)

Query: 99  GERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMH 158
           G   Y L P SK  V  +D  SL   + +  D   +ESW  LKDAV EGG PF R  GM 
Sbjct: 3   GGEDYGLTPASKLLVKGEDSPSLAPLLLMYADPTLLESWAHLKDAVREGGPPFERAFGMP 62

Query: 159 IFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSK 218
            FEY   +P FN  ++ AM  HS + M++ILE    F  +  LVDVGGG G   + I   
Sbjct: 63  FFEYLGADPEFNRVFNRAMAAHSRLVMKKILETAFDFSGLSSLVDVGGGTGALAAAIVRA 122

Query: 219 YPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMK 262
           YP IK + FDLPHV+ DAPS   VE VGG+ FESVPE DAIL+K
Sbjct: 123 YPHIKGIVFDLPHVIADAPSADRVEFVGGDFFESVPEADAILLK 166

This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239

>gnl|CDD|219719 pfam08100, Dimerisation, Dimerisation domain

 Score = 68.4 bits (168), Expect = 2e-15
 Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 1/50 (2%)

Query: 39 MATQAAIQLGVFEIIAKAGE-LSAPEIAAQLQAQNVKAPMMLDRMLRLLV 87
          M  + AI+LG+ +IIAK G+ LS  E+A++L   N +AP+MLDR+LRLL 
Sbjct: 1  MVLKCAIELGIPDIIAKHGKPLSPSELASKLPTVNPEAPVMLDRLLRLLA 50

This domain is found at the N-terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins. Length = 50

>gnl|CDD|131763 TIGR02716, C20_methyl_CrtF, C-20 methyltransferase BchU

 Score = 43.5 bits (102), Expect = 5e-05
 Identities = 44/236 (18%), Positives = 88/236 (37%), Gaps = 38/236 (16%)

Query: 42  QAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER 101
           +AAI+L +F  +A       P+  A L A     P    R+  LL + R +        +
Sbjct: 8   KAAIELDLFSHMA-----EGPKDLATLAADTGSVP---PRLEMLLETLRQMRVINLEDGK 59

Query: 102 LYALNPVSKYFVSNKD---GASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRV--HG 156
            ++L   + Y  S                    +  + ++GL    + G   F     + 
Sbjct: 60  -WSLTEFADYMFSPTPKEPNLHQTPVAKAMAF-LADDFYMGLSQ-AVRGQKNFKGQVPYP 116

Query: 157 MHIFEYASGNPRFNETYHEA---MFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLS 213
               E    +  + E  H +         +   ++         V++++DVGGG G   +
Sbjct: 117 PVTRE----DNLYFEEIHRSNAKFAIQLLLEEAKL-------DGVKKMIDVGGGIGDISA 165

Query: 214 MITSKYPQIKAVNFDLPH---VVQDAPSYAG----VEHVGGNMF-ESVPEGDAILM 261
            +   +P++ +   +LP    +V +  +  G    +  +  +++ ES PE DA+L 
Sbjct: 166 AMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLF 221

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306

>gnl|CDD|234659 PRK00137, rplI, 50S ribosomal protein L9; Reviewed

 Score = 39.7 bits (94), Expect = 4e-04
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 17/73 (23%)

Query: 9   KLAQKKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE-------LSA 61
           +L  ++ E E +  E  + A  LA            ++     I AKAGE       ++ 
Sbjct: 46  QLEARRAELEAKAAEELAEAEALA----------EKLEGLTVTIKAKAGEDGKLFGSVTT 95

Query: 62  PEIAAQLQAQNVK 74
            +IA  L+ Q ++
Sbjct: 96  KDIAEALKKQGIE 108

Length = 147

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	273
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	100.0
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	100.0
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	100.0
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.02
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.02
PRK06922	677	hypothetical protein; Provisional	98.99
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	98.95
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	98.89
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.85
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	98.84
PF08100	51	Dimerisation: Dimerisation domain; InterPro: IPR01	98.82
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.82
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	98.81
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	98.8
PLN02233	261	ubiquinone biosynthesis methyltransferase	98.79
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	98.79
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	98.73
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.71
PLN02244	340	tocopherol O-methyltransferase	98.71
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	98.71
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.7
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	98.7
PRK06202	232	hypothetical protein; Provisional	98.7
PRK11207	197	tellurite resistance protein TehB; Provisional	98.67
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.66
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.65
PLN03075	296	nicotianamine synthase; Provisional	98.64
PLN02490	340	MPBQ/MSBQ methyltransferase	98.63
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.61
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.61
PRK08317	241	hypothetical protein; Provisional	98.61
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	98.61
PLN02336	475	phosphoethanolamine N-methyltransferase	98.58
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.57
PRK05785	226	hypothetical protein; Provisional	98.56
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.56
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.55
PRK10258	251	biotin biosynthesis protein BioC; Provisional	98.52
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	98.49
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.46
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	98.44
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	98.43
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	98.41
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	98.41
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	98.41
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.39
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.38
COG2890	280	HemK Methylase of polypeptide chain release factor	98.37
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	98.37
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.36
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.36
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	98.34
PRK04457	262	spermidine synthase; Provisional	98.33
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	98.31
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.3
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	98.29
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	98.29
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	98.28
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	98.28
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	98.27
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	98.26
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	98.26
PLN02336	475	phosphoethanolamine N-methyltransferase	98.26
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	98.24
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.24
COG4123	248	Predicted O-methyltransferase [General function pr	98.24
PRK12335	287	tellurite resistance protein TehB; Provisional	98.23
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.22
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	98.21
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	98.2
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.2
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.2
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	98.19
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.17
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	98.16
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.15
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.15
TIGR03438	301	probable methyltransferase. This model represents	98.15
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.12
PRK07402	196	precorrin-6B methylase; Provisional	98.11
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	98.08
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.07
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.07
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	98.06
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.06
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.03
PHA03411	279	putative methyltransferase; Provisional	98.03
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	97.99
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	97.98
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	97.96
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	97.94
PLN02366	308	spermidine synthase	97.94
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	97.93
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	97.92
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	97.91
PRK04266	226	fibrillarin; Provisional	97.9
PRK00811	283	spermidine synthase; Provisional	97.85
PRK14968	188	putative methyltransferase; Provisional	97.83
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	97.82
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	97.81
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	97.81
PHA03412	241	putative methyltransferase; Provisional	97.8
PRK14967	223	putative methyltransferase; Provisional	97.79
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	97.78
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	97.78
PRK01581	374	speE spermidine synthase; Validated	97.78
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	97.75
PRK04148	134	hypothetical protein; Provisional	97.72
PLN02672	1082	methionine S-methyltransferase	97.69
KOG2904	328	consensus Predicted methyltransferase [General fun	97.68
KOG1271	227	consensus Methyltransferases [General function pre	97.66
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	97.66
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	97.65
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	97.65
TIGR00438	188	rrmJ cell division protein FtsJ.	97.64
PRK13255	218	thiopurine S-methyltransferase; Reviewed	97.62
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	97.6
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.59
PRK03612	521	spermidine synthase; Provisional	97.59
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	97.52
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	97.52
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	97.51
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	97.5
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	97.48
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	97.46
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	97.45
smart00550	68	Zalpha Z-DNA-binding domain in adenosine deaminase	97.44
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	97.41
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	97.4
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	97.39
PLN02823	336	spermine synthase	97.36
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	97.34
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	97.34
KOG2899	288	consensus Predicted methyltransferase [General fun	97.33
smart00346	91	HTH_ICLR helix_turn_helix isocitrate lyase regulat	97.3
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	97.3
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	97.27
PRK10141	117	DNA-binding transcriptional repressor ArsR; Provis	97.26
PF12840	61	HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_	97.25
PRK14902	444	16S rRNA methyltransferase B; Provisional	97.25
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	97.24
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	97.24
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	97.23
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	97.23
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	97.2
PTZ00146	293	fibrillarin; Provisional	97.16
PF09339	52	HTH_IclR: IclR helix-turn-helix domain; InterPro:	97.15
PRK10901	427	16S rRNA methyltransferase B; Provisional	97.11
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.11
PF01022	47	HTH_5: Bacterial regulatory protein, arsR family;	97.08
PRK13256	226	thiopurine S-methyltransferase; Reviewed	97.07
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	97.02
PF01978	68	TrmB: Sugar-specific transcriptional regulator Trm	96.99
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	96.99
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	96.96
KOG3010	261	consensus Methyltransferase [General function pred	96.95
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	96.91
PRK00536	262	speE spermidine synthase; Provisional	96.91
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	96.9
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	96.88
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	96.86
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	96.86
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	96.85
PF13412	48	HTH_24: Winged helix-turn-helix DNA-binding; PDB:	96.84
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	96.84
PRK15090	257	DNA-binding transcriptional regulator KdgR; Provis	96.81
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	96.79
KOG3115	249	consensus Methyltransferase-like protein [General	96.77
PF14947	77	HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_	96.77
PHA00738	108	putative HTH transcription regulator	96.74
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	96.73
PF13679	141	Methyltransf_32: Methyltransferase domain	96.71
PRK14904	445	16S rRNA methyltransferase B; Provisional	96.69
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	96.69
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	96.69
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	96.67
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	96.66
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	96.65
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	96.64
KOG2361	264	consensus Predicted methyltransferase [General fun	96.64
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	96.6
PRK11569	274	transcriptional repressor IclR; Provisional	96.6
PF13463	68	HTH_27: Winged helix DNA-binding domain; PDB: 3GFL	96.57
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	96.55
PF13601	80	HTH_34: Winged helix DNA-binding domain; PDB: 1UB9	96.55
PRK10163	271	DNA-binding transcriptional repressor AllR; Provis	96.52
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	96.51
COG1414	246	IclR Transcriptional regulator [Transcription]	96.48
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	96.45
PLN02476	278	O-methyltransferase	96.43
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	96.43
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	96.42
PRK09834	263	DNA-binding transcriptional activator MhpR; Provis	96.41
TIGR02337	118	HpaR homoprotocatechuate degradation operon regula	96.41
TIGR02431	248	pcaR_pcaU beta-ketoadipate pathway transcriptional	96.4
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	96.37
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	96.35
PRK14901	434	16S rRNA methyltransferase B; Provisional	96.34
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	96.27
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	96.25
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	96.25
PRK14903	431	16S rRNA methyltransferase B; Provisional	96.19
smart00347	101	HTH_MARR helix_turn_helix multiple antibiotic resi	96.18
PF04703	62	FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.	96.08
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	96.07
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.02
COG4262	508	Predicted spermidine synthase with an N-terminal m	96.01
COG2345	218	Predicted transcriptional regulator [Transcription	96.0
PRK03902	142	manganese transport transcriptional regulator; Pro	95.98
PF09012	69	FeoC: FeoC like transcriptional regulator; InterPr	95.97
TIGR02702	203	SufR_cyano iron-sulfur cluster biosynthesis transc	95.93
smart00419	48	HTH_CRP helix_turn_helix, cAMP Regulatory protein.	95.92
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	95.92
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	95.92
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	95.9
PF02082	83	Rrf2: Transcriptional regulator; InterPro: IPR0009	95.81
smart00418	66	HTH_ARSR helix_turn_helix, Arsenical Resistance Op	95.81
cd00092	67	HTH_CRP helix_turn_helix, cAMP Regulatory protein	95.78
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	95.76
PF12802	62	MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP	95.76
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	95.76
PRK10857	164	DNA-binding transcriptional regulator IscR; Provis	95.7
COG4742	260	Predicted transcriptional regulator [Transcription	95.69
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	95.69
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	95.61
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	95.6
PLN02589	247	caffeoyl-CoA O-methyltransferase	95.6
PRK11050	152	manganese transport regulator MntR; Provisional	95.54
COG4122	219	Predicted O-methyltransferase [General function pr	95.54
cd00090	78	HTH_ARSR Arsenical Resistance Operon Repressor and	95.49
COG4190	144	Predicted transcriptional regulator [Transcription	95.48
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	95.46
COG4189	308	Predicted transcriptional regulator [Transcription	95.46
PF01638	90	HxlR: HxlR-like helix-turn-helix; InterPro: IPR002	95.45
PF01047	59	MarR: MarR family; InterPro: IPR000835 The MarR-ty	95.43
TIGR02010	135	IscR iron-sulfur cluster assembly transcription fa	95.42
TIGR01884	203	cas_HTH CRISPR locus-related DNA-binding protein.	95.4
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	95.34
PF08220	57	HTH_DeoR: DeoR-like helix-turn-helix domain; Inter	95.32
smart00420	53	HTH_DEOR helix_turn_helix, Deoxyribose operon repr	95.26
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	95.19
PRK06266	178	transcription initiation factor E subunit alpha; V	95.04
PRK11512	144	DNA-binding transcriptional repressor MarR; Provis	95.04
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	95.0
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	95.0
COG2384	226	Predicted SAM-dependent methyltransferase [General	94.98
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	94.98
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	94.98
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	94.96
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	94.93
COG3355	126	Predicted transcriptional regulator [Transcription	94.92
COG1321	154	TroR Mn-dependent transcriptional regulator [Trans	94.88
TIGR00738	132	rrf2_super rrf2 family protein (putative transcrip	94.87
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	94.87
smart00344	108	HTH_ASNC helix_turn_helix ASNC type. AsnC: an auto	94.82
TIGR01889	109	Staph_reg_Sar staphylococcal accessory regulator f	94.8
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	94.6
TIGR02944	130	suf_reg_Xantho FeS assembly SUF system regulator,	94.6
KOG2730	263	consensus Methylase [General function prediction o	94.45
PF07381	90	DUF1495: Winged helix DNA-binding domain (DUF1495)	94.44
TIGR00122	69	birA_repr_reg BirA biotin operon repressor domain.	94.44
PRK11920	153	rirA iron-responsive transcriptional regulator; Re	94.44
COG4076	252	Predicted RNA methylase [General function predicti	94.34
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	94.33
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	94.31
COG1959	150	Predicted transcriptional regulator [Transcription	94.28
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	94.2
PF10007	92	DUF2250: Uncharacterized protein conserved in arch	94.18
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	94.17
PF06163	127	DUF977: Bacterial protein of unknown function (DUF	94.15
PF08461	66	HTH_12: Ribonuclease R winged-helix domain; InterP	94.09
KOG1331	293	consensus Predicted methyltransferase [General fun	93.97
PF04967	53	HTH_10: HTH DNA binding domain; InterPro: IPR00705	93.78
PF01726	65	LexA_DNA_bind: LexA DNA binding domain; InterPro:	93.78
COG3432	95	Predicted transcriptional regulator [Transcription	93.71
PRK14165	217	winged helix-turn-helix domain-containing protein/	93.7
PF07789	155	DUF1627: Protein of unknown function (DUF1627); In	93.55
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	93.48
PRK15431	78	ferrous iron transport protein FeoC; Provisional	93.29
PRK11014	141	transcriptional repressor NsrR; Provisional	93.27
smart00529	96	HTH_DTXR Helix-turn-helix diphteria tox regulatory	93.22
KOG4300	252	consensus Predicted methyltransferase [General fun	93.15
PF01325	60	Fe_dep_repress: Iron dependent repressor, N-termin	92.86
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	92.85
PRK04172	489	pheS phenylalanyl-tRNA synthetase subunit alpha; P	92.74
PHA02943	165	hypothetical protein; Provisional	92.71
PRK06474	178	hypothetical protein; Provisional	92.67
COG1378	247	Predicted transcriptional regulators [Transcriptio	92.63
PRK11179	153	DNA-binding transcriptional regulator AsnC; Provis	92.54
PRK03573	144	transcriptional regulator SlyA; Provisional	92.48
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	92.38
PRK11169	164	leucine-responsive transcriptional regulator; Prov	92.36
cd07377	66	WHTH_GntR Winged helix-turn-helix (WHTH) DNA-bindi	92.16
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	92.15
cd07153	116	Fur_like Ferric uptake regulator(Fur) and related	92.14
smart00345	60	HTH_GNTR helix_turn_helix gluconate operon transcr	92.11
TIGR01610	95	phage_O_Nterm phage replication protein O, N-termi	91.98
PRK13777	185	transcriptional regulator Hpr; Provisional	91.94
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	91.85
PF02002	105	TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024	91.66
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	91.62
COG1522	154	Lrp Transcriptional regulators [Transcription]	91.48
PF14394	171	DUF4423: Domain of unknown function (DUF4423)	91.42
PLN02668	386	indole-3-acetate carboxyl methyltransferase	91.41
COG1846	126	MarR Transcriptional regulators [Transcription]	91.18
PF00325	32	Crp: Bacterial regulatory proteins, crp family; In	91.15
PRK05638	442	threonine synthase; Validated	91.1
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	90.83
PF08279	55	HTH_11: HTH domain; InterPro: IPR013196 Winged hel	90.73
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	90.69
PRK10870	176	transcriptional repressor MprA; Provisional	90.6
PRK10742	250	putative methyltransferase; Provisional	90.17
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	90.11
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	90.04
PF08221	62	HTH_9: RNA polymerase III subunit RPC82 helix-turn	90.02
PLN02853	492	Probable phenylalanyl-tRNA synthetase alpha chain	89.99
COG5631	199	Predicted transcription regulator, contains HTH do	89.89
PF13404	42	HTH_AsnC-type: AsnC-type helix-turn-helix domain;	89.85
PF04182	75	B-block_TFIIIC: B-block binding subunit of TFIIIC;	89.61
COG2265	432	TrmA SAM-dependent methyltransferases related to t	89.37
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	89.24
COG3897	218	Predicted methyltransferase [General function pred	88.97
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	88.91
PRK13509	251	transcriptional repressor UlaR; Provisional	88.75
COG1733	120	Predicted transcriptional regulators [Transcriptio	88.75
TIGR02787	251	codY_Gpos GTP-sensing transcriptional pleiotropic	88.66
PF13545	76	HTH_Crp_2: Crp-like helix-turn-helix domain; PDB:	88.65
COG2512	258	Predicted membrane-associated trancriptional regul	88.32
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	88.28
TIGR00498	199	lexA SOS regulatory protein LexA. LexA acts as a h	88.27
COG1497	260	Predicted transcriptional regulator [Transcription	88.26
COG4565	224	CitB Response regulator of citrate/malate metaboli	87.31
PF03444	78	HrcA_DNA-bdg: Winged helix-turn-helix transcriptio	87.01
COG1675	176	TFA1 Transcription initiation factor IIE, alpha su	86.59
PRK10906	252	DNA-binding transcriptional repressor GlpR; Provis	86.48
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	86.36
PF02295	66	z-alpha: Adenosine deaminase z-alpha domain; Inter	86.32
PRK10434	256	srlR DNA-bindng transcriptional repressor SrlR; Pr	86.19
smart00531	147	TFIIE Transcription initiation factor IIE.	85.82
PTZ00326	494	phenylalanyl-tRNA synthetase alpha chain; Provisio	85.55
PF13730	55	HTH_36: Helix-turn-helix domain	85.43
TIGR02147	271	Fsuc_second hypothetical protein, TIGR02147. This	85.41
COG1565	370	Uncharacterized conserved protein [Function unknow	85.36
PRK09802	269	DNA-binding transcriptional regulator AgaR; Provis	85.35
PF05732	165	RepL: Firmicute plasmid replication protein (RepL)	85.34
PF04072	183	LCM: Leucine carboxyl methyltransferase; InterPro:	85.24
PRK10411	240	DNA-binding transcriptional activator FucR; Provis	85.1
KOG3924	419	consensus Putative protein methyltransferase invol	84.58
KOG4058	199	consensus Uncharacterized conserved protein [Funct	84.44
PRK01381	99	Trp operon repressor; Provisional	83.98
PRK11886	319	bifunctional biotin--[acetyl-CoA-carboxylase] synt	83.97
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	83.81
PRK09775	442	putative DNA-binding transcriptional regulator; Pr	83.73
PF05584	72	Sulfolobus_pRN: Sulfolobus plasmid regulatory prot	83.72
COG0640	110	ArsR Predicted transcriptional regulators [Transcr	83.68
PF12324	77	HTH_15: Helix-turn-helix domain of alkylmercury ly	83.65
TIGR01321	94	TrpR trp operon repressor, proteobacterial. This m	83.61
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	83.56
PHA02701	183	ORF020 dsRNA-binding PKR inhibitor; Provisional	83.48
PF08784	102	RPA_C: Replication protein A C terminal; InterPro:	83.48
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	83.46
PF00392	64	GntR: Bacterial regulatory proteins, gntR family;	83.24
PF13518	52	HTH_28: Helix-turn-helix domain	83.2
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	82.95
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	82.35
COG1349	253	GlpR Transcriptional regulators of sugar metabolis	82.25
PF02796	45	HTH_7: Helix-turn-helix domain of resolvase; Inter	81.66
PRK04214	412	rbn ribonuclease BN/unknown domain fusion protein;	81.64
PRK00135	188	scpB segregation and condensation protein B; Revie	81.0
PF13384	50	HTH_23: Homeodomain-like domain; PDB: 2X48_C.	80.73
PF00126	60	HTH_1: Bacterial regulatory helix-turn-helix prote	80.66
TIGR02698	130	CopY_TcrY copper transport repressor, CopY/TcrY fa	80.4
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	80.37
PRK04424	185	fatty acid biosynthesis transcriptional regulator;	80.33

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=100.00  E-value=1.6e-36  Score=266.71  Aligned_cols=249  Identities=47%  Similarity=0.789  Sum_probs=223.3

Q ss_pred             hhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCc-CCCCCcchHHHHHHHHhcCCceeccccCC
Q 024046           21 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQA-QNVKAPMMLDRMLRLLVSHRVLECSVSGG   99 (273)
Q Consensus        21 ~~~~~~~l~~~~~g~~~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~-~~~~~~~~l~rlL~~L~~~gll~~~~~~~   99 (273)
                      +..+..+++++++++..++++.+|+|||+||+|.+.++  ..|+|-.+-. .++.++..+.|+||.|++.+++...-.+.
T Consensus         3 e~~~~l~~~~l~~~~~~~~~lk~A~eL~v~d~l~~~~~--p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~~~~   80 (342)
T KOG3178|consen    3 ENEASLRAMRLANGFALPMVLKAACELGVFDILANAGS--PSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRLVGG   80 (342)
T ss_pred             hhHHHHHHHHHHhhhhhHHHHHHHHHcChHHHHHhCCC--HHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeeeecc
Confidence            45677899999999999999999999999999999644  8888888874 35568889999999999999999742112


Q ss_pred             CcceecChhchHhhcCCCCCccchhhcccCChhHHHHhhhHHHHHhcCCCcchhccCCchhhhhhcCcchHHHHHHHHHh
Q 024046          100 ERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFN  179 (273)
Q Consensus       100 ~~~y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~am~~  179 (273)
                      . .|.++|+++.+.++.+..++..+....+++..++.|..+.++++.++.+|..++|+..|+|...++.....|+.+|..
T Consensus        81 ~-~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~  159 (342)
T KOG3178|consen   81 E-VYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSF  159 (342)
T ss_pred             e-eeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHHHHHH
Confidence            2 799999999888776656778888777788889999999999999999999999988999998888888899999999


Q ss_pred             cchhhHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCC-CCceEEEcccCCCCCCCCE
Q 024046          180 HSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-AGVEHVGGNMFESVPEGDA  258 (273)
Q Consensus       180 ~~~~~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~-~ri~~~~gD~f~~~p~~D~  258 (273)
                      .+....+.+++.+..|++....||||||.|..+..++..||+++++.+|+|.|++.+... ++|+.+.||+|.+.|++|+
T Consensus       160 l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~da  239 (342)
T KOG3178|consen  160 LSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKGDA  239 (342)
T ss_pred             HHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccccCCCcCe
Confidence            999888888898887889999999999999999999999999999999999999999988 9999999999999999999


Q ss_pred             EEecccccccCCCC
Q 024046          259 ILMKVGNFENYQSH  272 (273)
Q Consensus       259 ~~l~~vLHd~~~~~  272 (273)
                      |++.+|||||+|++
T Consensus       240 I~mkWiLhdwtDed  253 (342)
T KOG3178|consen  240 IWMKWILHDWTDED  253 (342)
T ss_pred             EEEEeecccCChHH
Confidence            99999999999985

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=100.00  E-value=3.2e-35  Score=254.23  Aligned_cols=173  Identities=28%  Similarity=0.565  Sum_probs=153.1

Q ss_pred             CCcceecChhchHhhcCCCCCccchhhcccCChhHHHHhhhHHHHHhcCCCcchhccCCchhhhhhcCcchHHHHHHHHH
Q 024046           99 GERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMF  178 (273)
Q Consensus        99 ~~~~y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~am~  178 (273)
                      +++.|++|+.|+.|+.+.+..++..++.++..+..+..|.+|++++++|+++|+..+|.++|+|+.++|+..+.|+.+|.
T Consensus         2 ~~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~   81 (241)
T PF00891_consen    2 EGDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGKPPFEKAFGTPFFEYLEEDPELAKRFNAAMA   81 (241)
T ss_dssp             STEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS-HHHHHHSS-HHHHHHCSHHHHHHHHHHHH
T ss_pred             CCCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCCCHHHHhcCCcHHHhhhhChHHHHHHHHHHH
Confidence            56899999999998888775577777777667889999999999999999999999998899999999999999999999


Q ss_pred             hcchhhH-HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCCCCceEEEcccCCCCCCCC
Q 024046          179 NHSTIAM-ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGD  257 (273)
Q Consensus       179 ~~~~~~~-~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~~ri~~~~gD~f~~~p~~D  257 (273)
                      ..+.... +.++..++ |++..+|||||||+|.++.+++++||+++++++|+|+|++.+++.+||++++||||+++|.+|
T Consensus        82 ~~~~~~~~~~~~~~~d-~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~D  160 (241)
T PF00891_consen   82 EYSRLNAFDILLEAFD-FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPVAD  160 (241)
T ss_dssp             HHHHHHHHHHHHHHST-TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSSES
T ss_pred             hhhhcchhhhhhcccc-ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhhcccc
Confidence            9888877 77888888 999999999999999999999999999999999999999998888999999999999999999


Q ss_pred             EEEecccccccCCCC
Q 024046          258 AILMKVGNFENYQSH  272 (273)
Q Consensus       258 ~~~l~~vLHd~~~~~  272 (273)
                      +|++++|||+|+|++
T Consensus       161 ~~~l~~vLh~~~d~~  175 (241)
T PF00891_consen  161 VYLLRHVLHDWSDED  175 (241)
T ss_dssp             EEEEESSGGGS-HHH
T ss_pred             ceeeehhhhhcchHH
Confidence            999999999999874

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=100.00  E-value=2.4e-33  Score=250.68  Aligned_cols=219  Identities=21%  Similarity=0.350  Sum_probs=167.8

Q ss_pred             hHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhhcC
Q 024046           36 VLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSN  115 (273)
Q Consensus        36 ~~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~~~  115 (273)
                      ...++|++|++|||||+|.+ ||+|++|||+++|+    +++.++|+||+|+++|+|++    .++.|++|+.+..++.+
T Consensus         2 ~~~~~l~aa~~Lglfd~L~~-gp~t~~eLA~~~~~----~~~~~~~lL~~L~~lgll~~----~~~~y~~t~~~~~~l~~   72 (306)
T TIGR02716         2 IEFSCMKAAIELDLFSHMAE-GPKDLATLAADTGS----VPPRLEMLLETLRQMRVINL----EDGKWSLTEFADYMFSP   72 (306)
T ss_pred             chHHHHHHHHHcCcHHHHhc-CCCCHHHHHHHcCC----ChHHHHHHHHHHHhCCCeEe----cCCcEecchhHHhhccC
Confidence            35789999999999999987 89999999999999    99999999999999999997    46899999999877665


Q ss_pred             CCCC---ccchhhcccCChhHHHHhhhHHHHHhcCCCcchhccCCchhhhhhcCcchHHHHHHHHH-hcchhhHHHHHhh
Q 024046          116 KDGA---SLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMF-NHSTIAMERILEH  191 (273)
Q Consensus       116 ~~~~---~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~am~-~~~~~~~~~il~~  191 (273)
                      .++.   +...+..+. .......|.+|++++|+ +++|...     +++....++.. .|...|. .......+.+++.
T Consensus        73 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~r~-~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~  144 (306)
T TIGR02716        73 TPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRG-QKNFKGQ-----VPYPPVTREDN-LYFEEIHRSNAKFAIQLLLEE  144 (306)
T ss_pred             CccchhhhcCchHHHH-HHHHHHHHHhHHHHhcC-Ccccccc-----cCCCCCCHHHH-HhHHHHHHhcchhHHHHHHHH
Confidence            4421   112222221 11123568999999974 4444322     22222222222 3444444 4444445667777


Q ss_pred             cccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCC-------CCceEEEcccCC-CCCCCCEEEecc
Q 024046          192 YEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPEGDAILMKV  263 (273)
Q Consensus       192 ~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~-------~ri~~~~gD~f~-~~p~~D~~~l~~  263 (273)
                      .+ +++..+|||||||+|.+++.+++++|+++++++|+|.+++.++++       +||+++++|+|+ ++|.+|+|++++
T Consensus       145 ~~-~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~  223 (306)
T TIGR02716       145 AK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCR  223 (306)
T ss_pred             cC-CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEh
Confidence            76 888899999999999999999999999999999999999877542       789999999997 677789999999


Q ss_pred             cccccCCCC
Q 024046          264 GNFENYQSH  272 (273)
Q Consensus       264 vLHd~~~~~  272 (273)
                      +||+|+++.
T Consensus       224 ~lh~~~~~~  232 (306)
T TIGR02716       224 ILYSANEQL  232 (306)
T ss_pred             hhhcCChHH
Confidence            999998763

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.02  E-value=6.9e-10  Score=83.96  Aligned_cols=71  Identities=21%  Similarity=0.330  Sum_probs=59.8

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-------CCCceEEEccc-CC-CCCCC-CEEEecc-cc
Q 024046          198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNM-FE-SVPEG-DAILMKV-GN  265 (273)
Q Consensus       198 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gD~-f~-~~p~~-D~~~l~~-vL  265 (273)
                      ..+|||||||+|.++..+++++|..+++++|. |.+++.|++       .+||+++.+|+ +. +.++. |++++.. .+
T Consensus         2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~   81 (112)
T PF12847_consen    2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTL   81 (112)
T ss_dssp             TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSG
T ss_pred             CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCcc
Confidence            47899999999999999999999999999998 888887754       28999999999 43 34444 9999999 56


Q ss_pred             ccc
Q 024046          266 FEN  268 (273)
Q Consensus       266 Hd~  268 (273)
                      |++
T Consensus        82 ~~~   84 (112)
T PF12847_consen   82 HFL   84 (112)
T ss_dssp             GGC
T ss_pred             ccc
Confidence            644

...

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.02  E-value=8.5e-10  Score=93.04  Aligned_cols=77  Identities=14%  Similarity=0.343  Sum_probs=67.6

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-CCCceEEEcccCCCCCCC--CEEEecccccccCC
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFESVPEG--DAILMKVGNFENYQ  270 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-~~ri~~~~gD~f~~~p~~--D~~~l~~vLHd~~~  270 (273)
                      .++..+|||||||+|..+..+++..|..+++++|+ |++++.|+. .+++++..+|++++++.+  |+|++..+||+.++
T Consensus        41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p  120 (204)
T TIGR03587        41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINP  120 (204)
T ss_pred             cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCH
Confidence            44668999999999999999999999999999998 889998876 378999999999877653  99999999998875


Q ss_pred             C
Q 024046          271 S  271 (273)
Q Consensus       271 ~  271 (273)
                      +
T Consensus       121 ~  121 (204)
T TIGR03587       121 D  121 (204)
T ss_pred             H
Confidence            4

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK06922 hypothetical protein; Provisional

Probab=98.99  E-value=1.3e-09  Score=104.71  Aligned_cols=112  Identities=17%  Similarity=0.274  Sum_probs=83.9

Q ss_pred             CchhhhhhcCcchHHHHHHHHHhcchhh--HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHH
Q 024046          157 MHIFEYASGNPRFNETYHEAMFNHSTIA--MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVV  233 (273)
Q Consensus       157 ~~~~~~~~~~~~~~~~f~~am~~~~~~~--~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~  233 (273)
                      ..+|+++..+++..++|...|.......  .......++ +.+..+|||||||+|.++..+++.+|+.+++++|+ +.++
T Consensus       377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d-~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~ML  455 (677)
T PRK06922        377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD-YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVI  455 (677)
T ss_pred             hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh-hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHH
Confidence            4678888887777788876665433221  111222344 55678999999999999999999999999999999 6678


Q ss_pred             HhCCCC-----CCceEEEcccCC-C--CCCC--CEEEecccccccC
Q 024046          234 QDAPSY-----AGVEHVGGNMFE-S--VPEG--DAILMKVGNFENY  269 (273)
Q Consensus       234 ~~a~~~-----~ri~~~~gD~f~-~--~p~~--D~~~l~~vLHd~~  269 (273)
                      +.|+..     .+++++.+|..+ +  ++.+  |+|+++.++|+|.
T Consensus       456 e~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~  501 (677)
T PRK06922        456 DTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELF  501 (677)
T ss_pred             HHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhh
Confidence            776542     468889999876 3  4543  9999999999873

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=98.95  E-value=4e-09  Score=91.94  Aligned_cols=83  Identities=20%  Similarity=0.302  Sum_probs=70.0

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCCCCceEEEcccCCCCCC--CCEEEec
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVPE--GDAILMK  262 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gD~f~~~p~--~D~~~l~  262 (273)
                      ..+++.++ .....+|||||||+|.++..+++++|+.+++++|+ |.+++.|++ .+++++.+|+.+..+.  .|+|++.
T Consensus        19 ~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~~~~~fD~v~~~   96 (255)
T PRK14103         19 YDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-RGVDARTGDVRDWKPKPDTDVVVSN   96 (255)
T ss_pred             HHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-cCCcEEEcChhhCCCCCCceEEEEe
Confidence            45667666 66779999999999999999999999999999999 889988875 4699999998753333  3999999


Q ss_pred             ccccccCC
Q 024046          263 VGNFENYQ  270 (273)
Q Consensus       263 ~vLHd~~~  270 (273)
                      .+||..+|
T Consensus        97 ~~l~~~~d  104 (255)
T PRK14103         97 AALQWVPE  104 (255)
T ss_pred             hhhhhCCC
Confidence            99998765

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=98.89  E-value=3.6e-09  Score=84.87  Aligned_cols=75  Identities=19%  Similarity=0.317  Sum_probs=63.3

Q ss_pred             CcceEEEecCCccHHHHHHH-HHCCCCeEEEeec-hHHHHhCCC------CCCceEEEcccCC-C--CCCC-CEEEeccc
Q 024046          197 NVERLVDVGGGFGVTLSMIT-SKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE-S--VPEG-DAILMKVG  264 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~-~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gD~f~-~--~p~~-D~~~l~~v  264 (273)
                      ...+|||||||+|.++..++ +.+|..+++++|+ |.+++.|+.      .++++|..+|+++ +  ++.. |+++...+
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~   82 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV   82 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence            56799999999999999999 5689999999998 889988875      2789999999999 4  3333 99999999


Q ss_pred             ccccCCC
Q 024046          265 NFENYQS  271 (273)
Q Consensus       265 LHd~~~~  271 (273)
                      +|+..+.
T Consensus        83 l~~~~~~   89 (152)
T PF13847_consen   83 LHHFPDP   89 (152)
T ss_dssp             GGGTSHH
T ss_pred             hhhccCH
Confidence            9887653

...

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.85  E-value=1.3e-08  Score=88.78  Aligned_cols=85  Identities=19%  Similarity=0.299  Sum_probs=70.9

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-CCceEEEcccCCCCC-C-CCEEE
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFESVP-E-GDAIL  260 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-~ri~~~~gD~f~~~p-~-~D~~~  260 (273)
                      ...++..++ ..+..+|||||||+|.++..+++.+|..+++++|. |.+++.++.. ++++++.+|+.+..+ . .|+++
T Consensus        20 ~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~   98 (258)
T PRK01683         20 ARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIF   98 (258)
T ss_pred             HHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEE
Confidence            345667666 66788999999999999999999999999999998 8888888764 789999999976333 2 39999


Q ss_pred             ecccccccCC
Q 024046          261 MKVGNFENYQ  270 (273)
Q Consensus       261 l~~vLHd~~~  270 (273)
                      +..+||..+|
T Consensus        99 ~~~~l~~~~d  108 (258)
T PRK01683         99 ANASLQWLPD  108 (258)
T ss_pred             EccChhhCCC
Confidence            9999997654

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=98.84  E-value=1.3e-08  Score=87.22  Aligned_cols=76  Identities=20%  Similarity=0.280  Sum_probs=68.1

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCC-CCCCC--CEEEecccc
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG--DAILMKVGN  265 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~~p~~--D~~~l~~vL  265 (273)
                      .++.+|||||||+|.++..+++..+..+++++|. +.+++.+++.      ..|+|+.||..+ |+|..  |+|+++..|
T Consensus        50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fgl  129 (238)
T COG2226          50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL  129 (238)
T ss_pred             CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehh
Confidence            3679999999999999999999999999999998 8899988763      229999999999 89964  999999999


Q ss_pred             cccCCC
Q 024046          266 FENYQS  271 (273)
Q Consensus       266 Hd~~~~  271 (273)
                      |+.+|.
T Consensus       130 rnv~d~  135 (238)
T COG2226         130 RNVTDI  135 (238)
T ss_pred             hcCCCH
Confidence            999874

>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases

Probab=98.82  E-value=4.3e-09  Score=68.10  Aligned_cols=49  Identities=55%  Similarity=0.792  Sum_probs=41.9

Q ss_pred             HHHHHHHHhChhHHHHhCC--CCCHHHHHHHhCcCCCCCcchHHHHHHHHh
Q 024046           39 MATQAAIQLGVFEIIAKAG--ELSAPEIAAQLQAQNVKAPMMLDRMLRLLV   87 (273)
Q Consensus        39 ~aL~~a~elglfd~L~~~g--~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~   87 (273)
                      ++|++|++|||||.|.+.|  +.|++||+..+...|+.++..+.|+||+|+
T Consensus         1 MaLk~aveLgI~dii~~~g~~~ls~~eia~~l~~~~p~~~~~L~RimR~L~   51 (51)
T PF08100_consen    1 MALKCAVELGIPDIIHNAGGGPLSLSEIAARLPTSNPSAPPMLDRIMRLLV   51 (51)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTS-BEHHHHHHTSTCT-TTHHHHHHHHHHHHH
T ss_pred             CcHHHHHHcCcHHHHHHcCCCCCCHHHHHHHcCCCCcchHHHHHHHHHHhC
Confidence            5899999999999999986  999999999999435557889999999985

It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....

>TIGR00740 methyltransferase, putative

Probab=98.82  E-value=5.6e-09  Score=90.10  Aligned_cols=76  Identities=12%  Similarity=0.134  Sum_probs=65.0

Q ss_pred             CCcceEEEecCCccHHHHHHHHH--CCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC-CCCCCCEEEeccc
Q 024046          196 QNVERLVDVGGGFGVTLSMITSK--YPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEGDAILMKVG  264 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~--~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~p~~D~~~l~~v  264 (273)
                      .+..+|||||||+|.++..++++  +|+.+++++|+ |.+++.|+..       .+++++.+|+.+ +.+..|++++..+
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~  131 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT  131 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence            45678999999999999999997  48899999999 8898887642       479999999987 5666799999999


Q ss_pred             ccccCCC
Q 024046          265 NFENYQS  271 (273)
Q Consensus       265 LHd~~~~  271 (273)
                      ||.++++
T Consensus       132 l~~~~~~  138 (239)
T TIGR00740       132 LQFLPPE  138 (239)
T ss_pred             hhhCCHH
Confidence            9998754

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=98.81  E-value=5.6e-09  Score=86.80  Aligned_cols=85  Identities=15%  Similarity=0.241  Sum_probs=73.0

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-CCceEEEcccCCCCC--CCCEEE
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFESVP--EGDAIL  260 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-~ri~~~~gD~f~~~p--~~D~~~  260 (273)
                      +..++...+ .....+|+|+|||.|.....|++++|+...+++|. |++++.|+.. +.++|..+|+-+=.|  ..|+++
T Consensus        19 a~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dllf   97 (257)
T COG4106          19 ARDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLLF   97 (257)
T ss_pred             HHHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchhh
Confidence            356777777 77899999999999999999999999999999997 9999998765 899999999987455  459999


Q ss_pred             ecccccccCC
Q 024046          261 MKVGNFENYQ  270 (273)
Q Consensus       261 l~~vLHd~~~  270 (273)
                      .+-+||--+|
T Consensus        98 aNAvlqWlpd  107 (257)
T COG4106          98 ANAVLQWLPD  107 (257)
T ss_pred             hhhhhhhccc
Confidence            8888875443

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=98.80  E-value=1.7e-08  Score=86.38  Aligned_cols=83  Identities=17%  Similarity=0.203  Sum_probs=67.2

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhCCC------CCCceEEEcccCC-CCCCC-
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE-SVPEG-  256 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gD~f~-~~p~~-  256 (273)
                      .++..++ .....+|||||||+|.++..+++.+ |+.+++++|+ |.+++.++.      .++++++.+|..+ ++|.+ 
T Consensus        36 ~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~  114 (231)
T TIGR02752        36 DTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNS  114 (231)
T ss_pred             HHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCC
Confidence            3455555 5667899999999999999999986 6789999998 788776653      2689999999987 56653 


Q ss_pred             -CEEEecccccccCC
Q 024046          257 -DAILMKVGNFENYQ  270 (273)
Q Consensus       257 -D~~~l~~vLHd~~~  270 (273)
                       |+|++...+|+.++
T Consensus       115 fD~V~~~~~l~~~~~  129 (231)
T TIGR02752       115 FDYVTIGFGLRNVPD  129 (231)
T ss_pred             ccEEEEecccccCCC
Confidence             99999999988765

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=98.79  E-value=4.4e-08  Score=85.75  Aligned_cols=77  Identities=22%  Similarity=0.297  Sum_probs=65.0

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhCCC---------CCCceEEEcccCC-CCCCC--CEEE
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS---------YAGVEHVGGNMFE-SVPEG--DAIL  260 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~---------~~ri~~~~gD~f~-~~p~~--D~~~  260 (273)
                      ..+..+|||||||+|.++..+++.+ |+.+++++|. |++++.|++         .++|+++.+|..+ |+|.+  |+++
T Consensus        71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~  150 (261)
T PLN02233         71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT  150 (261)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence            4567899999999999999999885 6789999998 888887753         1579999999987 77754  9999


Q ss_pred             ecccccccCCC
Q 024046          261 MKVGNFENYQS  271 (273)
Q Consensus       261 l~~vLHd~~~~  271 (273)
                      +..+||+++|.
T Consensus       151 ~~~~l~~~~d~  161 (261)
T PLN02233        151 MGYGLRNVVDR  161 (261)
T ss_pred             EecccccCCCH
Confidence            99999998764

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=98.79  E-value=6.5e-09  Score=90.24  Aligned_cols=76  Identities=13%  Similarity=0.221  Sum_probs=64.8

Q ss_pred             CCcceEEEecCCccHHHHHHHH--HCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC-CCCCCCEEEeccc
Q 024046          196 QNVERLVDVGGGFGVTLSMITS--KYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEGDAILMKVG  264 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~--~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~p~~D~~~l~~v  264 (273)
                      ++..+|||||||+|..+..+++  .+|+.+++++|. |.+++.|+..       ++|+++.+|+.+ +.+..|++++..+
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~  134 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT  134 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence            4568999999999999999988  479999999998 9999888642       489999999987 5556699999999


Q ss_pred             ccccCCC
Q 024046          265 NFENYQS  271 (273)
Q Consensus       265 LHd~~~~  271 (273)
                      ||..+++
T Consensus       135 l~~l~~~  141 (247)
T PRK15451        135 LQFLEPS  141 (247)
T ss_pred             HHhCCHH
Confidence            9988754

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=98.73  E-value=2e-08  Score=86.36  Aligned_cols=77  Identities=23%  Similarity=0.365  Sum_probs=56.2

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhCCCC------CCceEEEcccCC-CCCCC--CEEEecc
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG--DAILMKV  263 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~~p~~--D~~~l~~  263 (273)
                      .....+|||||||+|.++..++++. |+.+++++|. |.+++.|++.      .+|+++.+|..+ |+|..  |+++++.
T Consensus        45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f  124 (233)
T PF01209_consen   45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF  124 (233)
T ss_dssp             --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence            4567899999999999999999885 6789999998 8999988742      589999999988 88864  9999999


Q ss_pred             cccccCCC
Q 024046          264 GNFENYQS  271 (273)
Q Consensus       264 vLHd~~~~  271 (273)
                      .||+.+|.
T Consensus       125 glrn~~d~  132 (233)
T PF01209_consen  125 GLRNFPDR  132 (233)
T ss_dssp             -GGG-SSH
T ss_pred             hHHhhCCH
Confidence            99998873

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.71  E-value=3.4e-09  Score=78.56  Aligned_cols=68  Identities=19%  Similarity=0.306  Sum_probs=46.3

Q ss_pred             EEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC---------CCceEEEcccCCCCC-CC-CEEEecccccccC
Q 024046          202 VDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------AGVEHVGGNMFESVP-EG-DAILMKVGNFENY  269 (273)
Q Consensus       202 vDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~---------~ri~~~~gD~f~~~p-~~-D~~~l~~vLHd~~  269 (273)
                      ||||||+|.++..+++++|..+.+++|. |.+++.+++.         .++++...|.+...+ +. |+|++.++||.+.
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~   80 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE   80 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence            7999999999999999999999999998 8889777764         234555555555444 23 9999999999984

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PLN02244 tocopherol O-methyltransferase

Probab=98.71  E-value=4.9e-08  Score=88.70  Aligned_cols=75  Identities=20%  Similarity=0.276  Sum_probs=63.1

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcccCC-CCCCC--CEEEeccc
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFE-SVPEG--DAILMKVG  264 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gD~f~-~~p~~--D~~~l~~v  264 (273)
                      ....+|||||||+|.++..+++++ +.+++++|+ |.+++.++.       .++|+++.+|+.+ +++.+  |+|++..+
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~  195 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES  195 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence            456899999999999999999998 678999998 777776543       1589999999987 67654  99999999


Q ss_pred             ccccCCC
Q 024046          265 NFENYQS  271 (273)
Q Consensus       265 LHd~~~~  271 (273)
                      +|+++|.
T Consensus       196 ~~h~~d~  202 (340)
T PLN02244        196 GEHMPDK  202 (340)
T ss_pred             hhccCCH
Confidence            9998763

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=98.71  E-value=5e-08  Score=81.02  Aligned_cols=77  Identities=19%  Similarity=0.363  Sum_probs=62.3

Q ss_pred             HhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCCCCCC-CEEE
Q 024046          189 LEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPEG-DAIL  260 (273)
Q Consensus       189 l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~p~~-D~~~  260 (273)
                      +..++ .....+|||||||+|.++..+++++|+.+++++|. |.+++.++++      ++|+++.+|...+++.. |+++
T Consensus        24 ~~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~  102 (187)
T PRK08287         24 LSKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIF  102 (187)
T ss_pred             HHhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEE
Confidence            34444 56778999999999999999999999999999999 8888777542      57999999987666654 9999


Q ss_pred             eccccc
Q 024046          261 MKVGNF  266 (273)
Q Consensus       261 l~~vLH  266 (273)
                      +....+
T Consensus       103 ~~~~~~  108 (187)
T PRK08287        103 IGGSGG  108 (187)
T ss_pred             ECCCcc
Confidence            876543

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.70  E-value=1.2e-07  Score=83.11  Aligned_cols=85  Identities=15%  Similarity=0.198  Sum_probs=65.0

Q ss_pred             HHHHhhcccCCCcceEEEecCCccH----HHHHHHHHCC-----CCeEEEeec-hHHHHhCCCC----------------
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGV----TLSMITSKYP-----QIKAVNFDL-PHVVQDAPSY----------------  239 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~----~~~~l~~~~P-----~l~~~~~Dl-p~v~~~a~~~----------------  239 (273)
                      +.+++... ..+..+|+|+|||+|.    +++.+++.+|     +.++++.|+ |.+++.|+..                
T Consensus        89 p~l~~~~~-~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~  167 (264)
T smart00138       89 PLLIASRR-HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLA  167 (264)
T ss_pred             HHHHHhcC-CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHh
Confidence            44444322 3456799999999997    6777777766     578999998 8888877651                


Q ss_pred             -----------------CCceEEEcccCCC-CCCC--CEEEecccccccCCC
Q 024046          240 -----------------AGVEHVGGNMFES-VPEG--DAILMKVGNFENYQS  271 (273)
Q Consensus       240 -----------------~ri~~~~gD~f~~-~p~~--D~~~l~~vLHd~~~~  271 (273)
                                       .+|+|..+|+.++ .|.+  |+|+++++||.++++
T Consensus       168 ~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~  219 (264)
T smart00138      168 RYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEP  219 (264)
T ss_pred             hhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHH
Confidence                             3799999999984 4443  999999999999754

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=98.70  E-value=7.3e-09  Score=77.23  Aligned_cols=72  Identities=17%  Similarity=0.382  Sum_probs=55.4

Q ss_pred             EEEecCCccHHHHHHHHHC---CCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCC-CCCCC--CEEEec-ccccc
Q 024046          201 LVDVGGGFGVTLSMITSKY---PQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG--DAILMK-VGNFE  267 (273)
Q Consensus       201 vvDVGGG~G~~~~~l~~~~---P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~-~~p~~--D~~~l~-~vLHd  267 (273)
                      |||+|||+|..+..+++.+   |+.+.+++|+ |++++.+++.     .+++++.+|+.+ +++.+  |+|++. .++|.
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~   80 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH   80 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence            7999999999999999998   6789999998 8888877642     589999999987 44443  999995 54888


Q ss_pred             cCCCC
Q 024046          268 NYQSH  272 (273)
Q Consensus       268 ~~~~~  272 (273)
                      +++++
T Consensus        81 ~~~~~   85 (101)
T PF13649_consen   81 LSPEE   85 (101)
T ss_dssp             SSHHH
T ss_pred             CCHHH
Confidence            87654

>PRK06202 hypothetical protein; Provisional

Probab=98.70  E-value=8.8e-08  Score=82.26  Aligned_cols=77  Identities=17%  Similarity=0.069  Sum_probs=59.8

Q ss_pred             CCcceEEEecCCccHHHHHHHHH----CCCCeEEEeec-hHHHHhCCCC---CCceEEEcccCC-CCCC-C-CEEEeccc
Q 024046          196 QNVERLVDVGGGFGVTLSMITSK----YPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPE-G-DAILMKVG  264 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~----~P~l~~~~~Dl-p~v~~~a~~~---~ri~~~~gD~f~-~~p~-~-D~~~l~~v  264 (273)
                      .+..+|||||||+|.++..|++.    .|+.+++++|+ |.+++.|+..   +++++..+|.-. +.+. . |+|+++.+
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~  138 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF  138 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence            46689999999999999888764    56789999998 8999887754   557766665432 3333 3 99999999


Q ss_pred             ccccCCCC
Q 024046          265 NFENYQSH  272 (273)
Q Consensus       265 LHd~~~~~  272 (273)
                      ||+.+|++
T Consensus       139 lhh~~d~~  146 (232)
T PRK06202        139 LHHLDDAE  146 (232)
T ss_pred             eecCChHH
Confidence            99998753

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.67  E-value=5.5e-08  Score=81.56  Aligned_cols=83  Identities=14%  Similarity=0.167  Sum_probs=65.2

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCC-CCCCC-
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG-  256 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~~p~~-  256 (273)
                      +.+++.++ .....+|||||||+|..+..|+++  ..+++++|+ |.+++.++..      .+|+++.+|+.+ +++.. 
T Consensus        20 ~~l~~~l~-~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~f   96 (197)
T PRK11207         20 SEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEY   96 (197)
T ss_pred             HHHHHhcc-cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCc
Confidence            45666665 455689999999999999999987  457999999 7777766542      458899999987 45544 


Q ss_pred             CEEEecccccccCCC
Q 024046          257 DAILMKVGNFENYQS  271 (273)
Q Consensus       257 D~~~l~~vLHd~~~~  271 (273)
                      |+|++..++|..+++
T Consensus        97 D~I~~~~~~~~~~~~  111 (197)
T PRK11207         97 DFILSTVVLMFLEAK  111 (197)
T ss_pred             CEEEEecchhhCCHH
Confidence            999999999977643

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.66  E-value=5.9e-08  Score=85.06  Aligned_cols=83  Identities=22%  Similarity=0.369  Sum_probs=67.3

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----CCCceEEEcccCC-CCCCC--
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE-SVPEG--  256 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~ri~~~~gD~f~-~~p~~--  256 (273)
                      ...+++.+. +.+..+|||||||+|..+..+++.+ ..+++++|+ |.+++.|+.    .++|+++.+|+.+ ++|.+  
T Consensus        41 ~~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~F  118 (263)
T PTZ00098         41 TTKILSDIE-LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTF  118 (263)
T ss_pred             HHHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCe
Confidence            345667666 7778899999999999999998876 578999998 777776654    2689999999987 67754  


Q ss_pred             CEEEecccccccC
Q 024046          257 DAILMKVGNFENY  269 (273)
Q Consensus       257 D~~~l~~vLHd~~  269 (273)
                      |+|+...++|+++
T Consensus       119 D~V~s~~~l~h~~  131 (263)
T PTZ00098        119 DMIYSRDAILHLS  131 (263)
T ss_pred             EEEEEhhhHHhCC
Confidence            9999988877665

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.65  E-value=9.1e-08  Score=81.41  Aligned_cols=99  Identities=15%  Similarity=0.123  Sum_probs=69.0

Q ss_pred             HHHHHHHHhcchhhHHHHHhhccc-CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CC
Q 024046          171 ETYHEAMFNHSTIAMERILEHYEG-FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AG  241 (273)
Q Consensus       171 ~~f~~am~~~~~~~~~~il~~~~~-~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~r  241 (273)
                      ..+...|..........++..+.. ..+..+|||||||+|.++..+++..  .+++++|. |+++..|++.       ++
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~v~gvD~s~~~i~~a~~~~~~~~~~~~  105 (219)
T TIGR02021        28 SRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRG--AIVKAVDISEQMVQMARNRAQGRDVAGN  105 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCCCCc
Confidence            344444432222223344444331 3457899999999999999998863  47899998 8888877642       48


Q ss_pred             ceEEEcccCCCCCCCCEEEecccccccCCC
Q 024046          242 VEHVGGNMFESVPEGDAILMKVGNFENYQS  271 (273)
Q Consensus       242 i~~~~gD~f~~~p~~D~~~l~~vLHd~~~~  271 (273)
                      +++..+|+.+.....|++++..++|.++++
T Consensus       106 i~~~~~d~~~~~~~fD~ii~~~~l~~~~~~  135 (219)
T TIGR02021       106 VEFEVNDLLSLCGEFDIVVCMDVLIHYPAS  135 (219)
T ss_pred             eEEEECChhhCCCCcCEEEEhhHHHhCCHH
Confidence            999999987633334999999999887653

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PLN03075 nicotianamine synthase; Provisional

Probab=98.64  E-value=9.8e-08  Score=84.29  Aligned_cols=76  Identities=13%  Similarity=0.143  Sum_probs=60.0

Q ss_pred             CCCcceEEEecCCccHH--HHHHHHHCCCCeEEEeec-hHHHHhCCC--------CCCceEEEcccCCCCC--CC-CEEE
Q 024046          195 FQNVERLVDVGGGFGVT--LSMITSKYPQIKAVNFDL-PHVVQDAPS--------YAGVEHVGGNMFESVP--EG-DAIL  260 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~--~~~l~~~~P~l~~~~~Dl-p~v~~~a~~--------~~ri~~~~gD~f~~~p--~~-D~~~  260 (273)
                      ..++++|+|||||.|-+  ...+++.+|+.+++++|. |+.++.|+.        .+||+|..+|..+..+  .. |+|+
T Consensus       121 ~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF  200 (296)
T PLN03075        121 NGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVF  200 (296)
T ss_pred             cCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEE
Confidence            34789999999998844  444556799999999998 888877654        1689999999988433  23 9999


Q ss_pred             ecccccccCCC
Q 024046          261 MKVGNFENYQS  271 (273)
Q Consensus       261 l~~vLHd~~~~  271 (273)
                      +. +||+|..+
T Consensus       201 ~~-ALi~~dk~  210 (296)
T PLN03075        201 LA-ALVGMDKE  210 (296)
T ss_pred             Ee-cccccccc
Confidence            99 99999643

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.63  E-value=9e-08  Score=86.48  Aligned_cols=75  Identities=21%  Similarity=0.224  Sum_probs=64.9

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC---CCceEEEcccCC-CCCCC--CEEEecccccccC
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPEG--DAILMKVGNFENY  269 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~---~ri~~~~gD~f~-~~p~~--D~~~l~~vLHd~~  269 (273)
                      ...+|||||||+|.++..+++.+|..+++++|. |.+++.|++.   .+++++.+|+.+ +++.+  |+|++..+||.|+
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~  192 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP  192 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence            457999999999999999999999899999998 8888877653   679999999987 56653  9999999999998


Q ss_pred             CC
Q 024046          270 QS  271 (273)
Q Consensus       270 ~~  271 (273)
                      +.
T Consensus       193 d~  194 (340)
T PLN02490        193 DP  194 (340)
T ss_pred             CH
Confidence            74

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.61  E-value=6.6e-08  Score=82.41  Aligned_cols=72  Identities=14%  Similarity=0.264  Sum_probs=60.8

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcccCC-CCCCC-CEEEeccccccc
Q 024046          199 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFE-SVPEG-DAILMKVGNFEN  268 (273)
Q Consensus       199 ~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gD~f~-~~p~~-D~~~l~~vLHd~  268 (273)
                      ++|||||||.|.++..+++.+|+.+++++|+ |..++.++.       .++|+++.+|+.+ +.+.. |+|+...++|+.
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~   80 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI   80 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence            4799999999999999999999999999998 777666654       2689999999976 45544 999999999987


Q ss_pred             CC
Q 024046          269 YQ  270 (273)
Q Consensus       269 ~~  270 (273)
                      .+
T Consensus        81 ~~   82 (224)
T smart00828       81 KD   82 (224)
T ss_pred             CC
Confidence            65

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.61  E-value=3.6e-07  Score=78.17  Aligned_cols=83  Identities=16%  Similarity=0.236  Sum_probs=66.0

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC-CCCCC
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG  256 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~p~~  256 (273)
                      .++..+. ..+..+|+|||||.|.++..+++.+| +.+++++|. |.+++.++..       ++++++.+|+.. +.+.+
T Consensus        42 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  120 (239)
T PRK00216         42 KTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDN  120 (239)
T ss_pred             HHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCC
Confidence            3444444 44567999999999999999999998 789999998 6776666542       579999999987 44433


Q ss_pred             --CEEEecccccccCC
Q 024046          257 --DAILMKVGNFENYQ  270 (273)
Q Consensus       257 --D~~~l~~vLHd~~~  270 (273)
                        |+|++.+++|.+++
T Consensus       121 ~~D~I~~~~~l~~~~~  136 (239)
T PRK00216        121 SFDAVTIAFGLRNVPD  136 (239)
T ss_pred             CccEEEEecccccCCC
Confidence              99999999998765

>PRK08317 hypothetical protein; Provisional

Probab=98.61  E-value=1.6e-07  Score=80.16  Aligned_cols=83  Identities=24%  Similarity=0.272  Sum_probs=67.4

Q ss_pred             HHhhcccCCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhCCC-----CCCceEEEcccCC-CCCCC--C
Q 024046          188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS-----YAGVEHVGGNMFE-SVPEG--D  257 (273)
Q Consensus       188 il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~-----~~ri~~~~gD~f~-~~p~~--D  257 (273)
                      ++..++ +....+|||||||+|.++..+++.+ |..+++++|+ |..++.++.     .++++++.+|+.. +++.+  |
T Consensus        11 ~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D   89 (241)
T PRK08317         11 TFELLA-VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFD   89 (241)
T ss_pred             HHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCce
Confidence            445555 6677899999999999999999998 8889999998 776666643     2679999999886 56543  9


Q ss_pred             EEEecccccccCCC
Q 024046          258 AILMKVGNFENYQS  271 (273)
Q Consensus       258 ~~~l~~vLHd~~~~  271 (273)
                      ++++.+++|++++.
T Consensus        90 ~v~~~~~~~~~~~~  103 (241)
T PRK08317         90 AVRSDRVLQHLEDP  103 (241)
T ss_pred             EEEEechhhccCCH
Confidence            99999999988763

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.61  E-value=7.7e-08  Score=69.90  Aligned_cols=67  Identities=16%  Similarity=0.298  Sum_probs=56.3

Q ss_pred             EEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC---CCceEEEcccCC-CCCCC--CEEEecccccccC
Q 024046          202 VDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPEG--DAILMKVGNFENY  269 (273)
Q Consensus       202 vDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~---~ri~~~~gD~f~-~~p~~--D~~~l~~vLHd~~  269 (273)
                      ||||||+|..+..++++ |..+.+++|. +..++.+++.   .+++++.+|+.+ |+|.+  |++++.+++|.+.
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~   74 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLE   74 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSS
T ss_pred             CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeecc
Confidence            79999999999999999 9999999998 7777777652   567899999988 77764  9999999999883

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.58  E-value=1.9e-07  Score=88.60  Aligned_cols=84  Identities=17%  Similarity=0.302  Sum_probs=68.1

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCC-CCCCC--
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG--  256 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~-~~p~~--  256 (273)
                      ..+++.+. +++..+|||||||+|..+..+++.+ +.+++++|+ |.+++.|+..     .+++++.+|+++ ++|.+  
T Consensus       256 e~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~f  333 (475)
T PLN02336        256 KEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSF  333 (475)
T ss_pred             HHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCE
Confidence            44566665 6667899999999999999998877 779999999 7777766432     589999999998 56753  


Q ss_pred             CEEEecccccccCCC
Q 024046          257 DAILMKVGNFENYQS  271 (273)
Q Consensus       257 D~~~l~~vLHd~~~~  271 (273)
                      |+|++..+++++++.
T Consensus       334 D~I~s~~~l~h~~d~  348 (475)
T PLN02336        334 DVIYSRDTILHIQDK  348 (475)
T ss_pred             EEEEECCcccccCCH
Confidence            999999999888763

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.57  E-value=1.4e-07  Score=82.19  Aligned_cols=80  Identities=21%  Similarity=0.192  Sum_probs=63.5

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC--CCCC-
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE--SVPE-  255 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~--~~p~-  255 (273)
                      .+++.++  +...+|||||||+|.++..+++..  .+++++|+ |++++.|++.       ++++++.+|+.+  +.+. 
T Consensus        36 ~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~g--~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~  111 (255)
T PRK11036         36 RLLAELP--PRPLRVLDAGGGEGQTAIKLAELG--HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLET  111 (255)
T ss_pred             HHHHhcC--CCCCEEEEeCCCchHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCC
Confidence            4455544  456799999999999999999974  57899998 8888877642       578999999975  3443 


Q ss_pred             -CCEEEecccccccCC
Q 024046          256 -GDAILMKVGNFENYQ  270 (273)
Q Consensus       256 -~D~~~l~~vLHd~~~  270 (273)
                       .|+|++..+||..++
T Consensus       112 ~fD~V~~~~vl~~~~~  127 (255)
T PRK11036        112 PVDLILFHAVLEWVAD  127 (255)
T ss_pred             CCCEEEehhHHHhhCC
Confidence             399999999998765

>PRK05785 hypothetical protein; Provisional

Probab=98.56  E-value=1.7e-07  Score=80.38  Aligned_cols=72  Identities=13%  Similarity=0.175  Sum_probs=61.0

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCCCCceEEEcccCC-CCCCC--CEEEecccccccCCC
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILMKVGNFENYQS  271 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gD~f~-~~p~~--D~~~l~~vLHd~~~~  271 (273)
                      ...+|||||||+|.++..+++++ +.+++++|. |++++.|+..  ..++.+|+.+ |++.+  |++++...||+++|.
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~  126 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDNI  126 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCCH
Confidence            46799999999999999999998 578999998 9999988753  3567889877 67654  999999999988764

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.56  E-value=2.3e-07  Score=79.29  Aligned_cols=74  Identities=16%  Similarity=0.299  Sum_probs=62.0

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC--CCceEEEcccCC-CCCCC--CEEEecccccccCC
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFE-SVPEG--DAILMKVGNFENYQ  270 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~--~ri~~~~gD~f~-~~p~~--D~~~l~~vLHd~~~  270 (273)
                      ...+|||||||+|.++..+++.+|+.+++++|. |.++..++..  ++++++.+|+.. +++..  |+++..+++|...+
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~  113 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD  113 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence            457899999999999999999999999999998 7777666543  589999999987 55543  99999999997644

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.55  E-value=2e-07  Score=79.56  Aligned_cols=74  Identities=22%  Similarity=0.225  Sum_probs=59.1

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCCC-CCEEEecccc
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE-GDAILMKVGN  265 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p~-~D~~~l~~vL  265 (273)
                      ..+..+|||||||+|.++..++++.+  +++++|+ +.+++.|+..       ++|+++.+| +...+. .|++++..++
T Consensus        61 ~~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d-~~~~~~~fD~v~~~~~l  137 (230)
T PRK07580         61 DLTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPEAGLAGNITFEVGD-LESLLGRFDTVVCLDVL  137 (230)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC-chhccCCcCEEEEcchh
Confidence            34567999999999999999998865  4899998 7788777642       489999999 433333 4999999999


Q ss_pred             cccCCC
Q 024046          266 FENYQS  271 (273)
Q Consensus       266 Hd~~~~  271 (273)
                      |.++++
T Consensus       138 ~~~~~~  143 (230)
T PRK07580        138 IHYPQE  143 (230)
T ss_pred             hcCCHH
Confidence            888765

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=98.52  E-value=6.8e-07  Score=77.59  Aligned_cols=83  Identities=14%  Similarity=0.180  Sum_probs=64.0

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-CCceEEEcccCC-CCCCC--CEE
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG--DAI  259 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-~ri~~~~gD~f~-~~p~~--D~~  259 (273)
                      +..+++.++ .....+|||||||+|.++..+.+.  ..+++++|+ |.+++.++.. ..++++.+|+.. +++.+  |+|
T Consensus        31 a~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V  107 (251)
T PRK10258         31 ADALLAMLP-QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLA  107 (251)
T ss_pred             HHHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEE
Confidence            445556555 345689999999999999888775  467999999 8888888764 456889999977 66653  999


Q ss_pred             EecccccccCC
Q 024046          260 LMKVGNFENYQ  270 (273)
Q Consensus       260 ~l~~vLHd~~~  270 (273)
                      +....+|..+|
T Consensus       108 ~s~~~l~~~~d  118 (251)
T PRK10258        108 WSNLAVQWCGN  118 (251)
T ss_pred             EECchhhhcCC
Confidence            99988885443

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=98.49  E-value=2.5e-07  Score=75.78  Aligned_cols=66  Identities=29%  Similarity=0.492  Sum_probs=56.4

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCCCCC-C-CEEEec
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE-G-DAILMK  262 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~p~-~-D~~~l~  262 (273)
                      ...+|||+|||+|.++..+++++|+.+++.+|. |.+++.++.+      +.++++..|++++.+. . |+|++.
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~N  105 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSN  105 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE-
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEc
Confidence            668899999999999999999999999999998 8888777542      3399999999998774 3 999875

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.46  E-value=6.4e-07  Score=75.77  Aligned_cols=83  Identities=16%  Similarity=0.206  Sum_probs=66.3

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhCCC----CCCceEEEcccCC-CCCCC--C
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE-SVPEG--D  257 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~----~~ri~~~~gD~f~-~~p~~--D  257 (273)
                      .++.... ..+..+|||+|||.|.++..+++.+|. .+++++|. |.+++.++.    .++++++.+|+.+ +.+.+  |
T Consensus        30 ~~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D  108 (223)
T TIGR01934        30 RAVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFD  108 (223)
T ss_pred             HHHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEE
Confidence            3444444 446789999999999999999999997 78999998 777776654    2579999999987 45543  9


Q ss_pred             EEEecccccccCC
Q 024046          258 AILMKVGNFENYQ  270 (273)
Q Consensus       258 ~~~l~~vLHd~~~  270 (273)
                      ++++..++|+.++
T Consensus       109 ~i~~~~~~~~~~~  121 (223)
T TIGR01934       109 AVTIAFGLRNVTD  121 (223)
T ss_pred             EEEEeeeeCCccc
Confidence            9999999987765

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=98.44  E-value=5.5e-07  Score=82.54  Aligned_cols=78  Identities=26%  Similarity=0.273  Sum_probs=61.7

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC---------CCceEEEcccCCCCCC
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------AGVEHVGGNMFESVPE  255 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~---------~ri~~~~gD~f~~~p~  255 (273)
                      .-+++.++ .....+|||||||+|.++..+++++|+.+++.+|. +.+++.++.+         ++++++.+|.++.++.
T Consensus       218 rllL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~  296 (378)
T PRK15001        218 RFFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEP  296 (378)
T ss_pred             HHHHHhCC-cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCC
Confidence            34566665 33346999999999999999999999999999998 6777766531         3789999999987654


Q ss_pred             -C-CEEEeccc
Q 024046          256 -G-DAILMKVG  264 (273)
Q Consensus       256 -~-D~~~l~~v  264 (273)
                       . |+|++.=-
T Consensus       297 ~~fDlIlsNPP  307 (378)
T PRK15001        297 FRFNAVLCNPP  307 (378)
T ss_pred             CCEEEEEECcC
Confidence             3 99999533

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=98.43  E-value=1.1e-06  Score=67.11  Aligned_cols=78  Identities=15%  Similarity=0.179  Sum_probs=59.6

Q ss_pred             HHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC------CCCceEEEcccCC---CCCC-C
Q 024046          188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE---SVPE-G  256 (273)
Q Consensus       188 il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gD~f~---~~p~-~  256 (273)
                      ++..+. .....+|+|||||+|.++..+++++|+.+++++|. +..++.++.      .++++++.+|...   ..+. .
T Consensus        11 ~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (124)
T TIGR02469        11 TLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEP   89 (124)
T ss_pred             HHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCC
Confidence            445554 55567999999999999999999999999999998 777766543      2679999998764   2233 3


Q ss_pred             CEEEeccccc
Q 024046          257 DAILMKVGNF  266 (273)
Q Consensus       257 D~~~l~~vLH  266 (273)
                      |++++....+
T Consensus        90 D~v~~~~~~~   99 (124)
T TIGR02469        90 DRVFIGGSGG   99 (124)
T ss_pred             CEEEECCcch
Confidence            9999876543

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=98.41  E-value=2.9e-07  Score=76.15  Aligned_cols=70  Identities=20%  Similarity=0.183  Sum_probs=54.9

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC------CCCceEEEcccCCC-CCC-CCEEEeccccccc
Q 024046          198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFES-VPE-GDAILMKVGNFEN  268 (273)
Q Consensus       198 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gD~f~~-~p~-~D~~~l~~vLHd~  268 (273)
                      ..+|+|||||+|..+..++..+|+.+++++|. |.+++.++.      .++|+++.+|+.+- ... .|+|++.. +|+.
T Consensus        43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~~  121 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LASL  121 (181)
T ss_pred             CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhCH
Confidence            57999999999999999999999999999998 666655432      25799999999762 222 39988765 5543

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=98.41  E-value=5.3e-07  Score=79.91  Aligned_cols=66  Identities=21%  Similarity=0.387  Sum_probs=56.9

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCCC-C-CEEEec
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE-G-DAILMK  262 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p~-~-D~~~l~  262 (273)
                      +..+|+|+|||+|.++..+++++|+.+++++|+ |.+++.|+.+       ++|+++.+|+++++|. . |++++.
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~N  196 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSN  196 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEEC
Confidence            457899999999999999999999999999998 8888877642       5799999999987765 3 999874

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=98.41  E-value=4.3e-07  Score=75.09  Aligned_cols=77  Identities=21%  Similarity=0.315  Sum_probs=60.2

Q ss_pred             hcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----CCCceEEEcccCCCCCCC--CEEEecc
Q 024046          191 HYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFESVPEG--DAILMKV  263 (273)
Q Consensus       191 ~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~ri~~~~gD~f~~~p~~--D~~~l~~  263 (273)
                      .++ -....+++|||||.|.+...|+.++-  +.+++|. |..++.|++    .++|+++.+|+-...|.+  |+++++-
T Consensus        38 aLp-~~ry~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SE  114 (201)
T PF05401_consen   38 ALP-RRRYRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSE  114 (201)
T ss_dssp             HHT-TSSEEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES
T ss_pred             hcC-ccccceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEeh
Confidence            455 56778999999999999999999974  5799998 888888865    388999999998878865  9999999


Q ss_pred             cccccCC
Q 024046          264 GNFENYQ  270 (273)
Q Consensus       264 vLHd~~~  270 (273)
                      |+|++++
T Consensus       115 VlYYL~~  121 (201)
T PF05401_consen  115 VLYYLDD  121 (201)
T ss_dssp             -GGGSSS
T ss_pred             HhHcCCC
Confidence            9999986

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.39  E-value=8.1e-07  Score=80.11  Aligned_cols=83  Identities=13%  Similarity=0.133  Sum_probs=61.2

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCC-------CCCCceEEEcccCC-CCCCC-
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP-------SYAGVEHVGGNMFE-SVPEG-  256 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~-------~~~ri~~~~gD~f~-~~p~~-  256 (273)
                      .++..++.+ ...+|||||||+|.++..+++..|. +++++|. +..+..++       ...+|+++.+|+.+ +.+.. 
T Consensus       113 ~l~~~l~~l-~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~F  190 (322)
T PRK15068        113 RVLPHLSPL-KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAF  190 (322)
T ss_pred             HHHHhhCCC-CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCc
Confidence            334454423 4589999999999999999999887 5999997 43333211       13579999999876 45444 


Q ss_pred             CEEEecccccccCCC
Q 024046          257 DAILMKVGNFENYQS  271 (273)
Q Consensus       257 D~~~l~~vLHd~~~~  271 (273)
                      |+|++..+||+..+.
T Consensus       191 D~V~s~~vl~H~~dp  205 (322)
T PRK15068        191 DTVFSMGVLYHRRSP  205 (322)
T ss_pred             CEEEECChhhccCCH
Confidence            999999999987653

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.38  E-value=4.5e-07  Score=81.59  Aligned_cols=73  Identities=15%  Similarity=0.031  Sum_probs=59.3

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC-CCCC--CCEEEecccc
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPE--GDAILMKVGN  265 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~p~--~D~~~l~~vL  265 (273)
                      ...+|||||||+|.++..+++  +..+++++|. +..++.|+.+       .+|+++.+|+.+ +.+.  .|+|++..+|
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL  208 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI  208 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence            346899999999999998886  4678999998 8888877642       479999999865 4443  3999999999


Q ss_pred             cccCCC
Q 024046          266 FENYQS  271 (273)
Q Consensus       266 Hd~~~~  271 (273)
                      |+..|.
T Consensus       209 eHv~d~  214 (322)
T PLN02396        209 EHVANP  214 (322)
T ss_pred             HhcCCH
Confidence            998774

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.37  E-value=8.2e-07  Score=78.46  Aligned_cols=63  Identities=24%  Similarity=0.413  Sum_probs=54.6

Q ss_pred             eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCCCCCC-CEEEec
Q 024046          200 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPEG-DAILMK  262 (273)
Q Consensus       200 ~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~p~~-D~~~l~  262 (273)
                      +|+|||||+|..++.+++++|++++++.|+ |..++.|+.+      .++.++.+|+|.+.+.. |+++.+
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsN  183 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSN  183 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeC
Confidence            899999999999999999999999999998 8888887653      56777888999987754 988753

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.37  E-value=5.7e-07  Score=80.56  Aligned_cols=64  Identities=20%  Similarity=0.361  Sum_probs=56.1

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCCC--CCEEEec
Q 024046          199 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE--GDAILMK  262 (273)
Q Consensus       199 ~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p~--~D~~~l~  262 (273)
                      .+|+|+|||+|.++..+++++|+.+++++|+ |.+++.|+.+       +||+++.+|+++++|.  .|+|++.
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsN  208 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSN  208 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEEC
Confidence            6899999999999999999999999999999 8888877642       5799999999987764  3999874

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.36  E-value=1.1e-06  Score=77.36  Aligned_cols=76  Identities=21%  Similarity=0.311  Sum_probs=62.7

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhCCCC------CCceEEEcccCC-CCCCC--CEEEecc
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG--DAILMKV  263 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~~p~~--D~~~l~~  263 (273)
                      +....+|||||||+|..+..+++.+ |+.+++++|+ |.+++.|+++      ++++++.+|+.. +++.+  |+++...
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~  154 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC  154 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence            5677899999999999888877764 6678999998 8888877642      689999999877 66653  9999999


Q ss_pred             cccccCC
Q 024046          264 GNFENYQ  270 (273)
Q Consensus       264 vLHd~~~  270 (273)
                      ++|.+++
T Consensus       155 v~~~~~d  161 (272)
T PRK11873        155 VINLSPD  161 (272)
T ss_pred             cccCCCC
Confidence            9998765

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.36  E-value=1e-06  Score=73.72  Aligned_cols=82  Identities=13%  Similarity=0.095  Sum_probs=61.4

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCC-CCCCC-CE
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-DA  258 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~-~~p~~-D~  258 (273)
                      .+++.++ .....+|||||||+|..+..++++  ..+++++|. |.+++.++..     -++++..+|+.. +.+.. |+
T Consensus        21 ~l~~~~~-~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~   97 (195)
T TIGR00477        21 AVREAVK-TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDF   97 (195)
T ss_pred             HHHHHhc-cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCE
Confidence            4555555 445679999999999999999986  468999998 7777766432     137778888765 34444 99


Q ss_pred             EEecccccccCCC
Q 024046          259 ILMKVGNFENYQS  271 (273)
Q Consensus       259 ~~l~~vLHd~~~~  271 (273)
                      |++..++|..+++
T Consensus        98 I~~~~~~~~~~~~  110 (195)
T TIGR00477        98 IFSTVVFMFLQAG  110 (195)
T ss_pred             EEEecccccCCHH
Confidence            9999999987643

Part of a tellurite-reducing operon tehA and tehB

>TIGR00536 hemK_fam HemK family putative methylases

Probab=98.34  E-value=1.4e-06  Score=77.12  Aligned_cols=64  Identities=23%  Similarity=0.466  Sum_probs=55.6

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCCC-C-CEEEec
Q 024046          199 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE-G-DAILMK  262 (273)
Q Consensus       199 ~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p~-~-D~~~l~  262 (273)
                      .+|+|+|||+|.++..+++.+|+.+++++|+ |.+++.|+.+       +|++++.+|++++++. . |+++..
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsN  189 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSN  189 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEEC
Confidence            6899999999999999999999999999998 8788777642       4699999999998775 3 998874

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK04457 spermidine synthase; Provisional

Probab=98.33  E-value=8.2e-07  Score=77.78  Aligned_cols=67  Identities=19%  Similarity=0.304  Sum_probs=57.2

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcccCC---CCCCC-CEEEec
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFE---SVPEG-DAILMK  262 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gD~f~---~~p~~-D~~~l~  262 (273)
                      +.+++|||||||.|.++..+++.+|+.+++++|+ |.|++.|++       .+|++++.+|..+   ..++. |+|++-
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D  143 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD  143 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence            4568999999999999999999999999999999 999988764       2789999999865   34444 999874

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=98.31  E-value=2.5e-06  Score=70.96  Aligned_cols=68  Identities=24%  Similarity=0.235  Sum_probs=55.7

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCC-CCCC-CCEEEecc
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPE-GDAILMKV  263 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~~p~-~D~~~l~~  263 (273)
                      +...+|||||||+|..+..+++++|..+++++|. +.+++.|+..      ++|+++.+|..+ +..+ .|++++..
T Consensus        44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~  120 (187)
T PRK00107         44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRA  120 (187)
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEcc
Confidence            3478999999999999999999999999999998 7777766542      459999999977 2322 39999864

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.30  E-value=1.9e-06  Score=71.90  Aligned_cols=73  Identities=19%  Similarity=0.338  Sum_probs=57.9

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCCCCceEEEcccCC---CCCC--CCEEEecccccccC
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE---SVPE--GDAILMKVGNFENY  269 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gD~f~---~~p~--~D~~~l~~vLHd~~  269 (273)
                      +...+|||||||+|.++..+++.. ..+++++|. ++.++.++. .+++++.+|+..   +++.  .|+|++.++||+..
T Consensus        12 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~   89 (194)
T TIGR02081        12 PPGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR   89 (194)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc
Confidence            355799999999999998887764 567899998 777776653 468999999875   3443  39999999999876


Q ss_pred             C
Q 024046          270 Q  270 (273)
Q Consensus       270 ~  270 (273)
                      |
T Consensus        90 d   90 (194)
T TIGR02081        90 N   90 (194)
T ss_pred             C
Confidence            5

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=98.29  E-value=2.4e-06  Score=77.55  Aligned_cols=80  Identities=19%  Similarity=0.304  Sum_probs=62.7

Q ss_pred             HHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCCCCCCC-CEEE
Q 024046          188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPEG-DAIL  260 (273)
Q Consensus       188 il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~~~p~~-D~~~  260 (273)
                      +++.++ .....+|||+|||+|.++..+++++|+.+++++|. +.+++.++..     -..+++.+|.+.+.++. |+|+
T Consensus       188 Ll~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlIv  266 (342)
T PRK09489        188 LLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMII  266 (342)
T ss_pred             HHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEEE
Confidence            444444 23345899999999999999999999999999998 7777777542     23578889998866554 9999


Q ss_pred             eccccccc
Q 024046          261 MKVGNFEN  268 (273)
Q Consensus       261 l~~vLHd~  268 (273)
                      +.--+|+.
T Consensus       267 sNPPFH~g  274 (342)
T PRK09489        267 SNPPFHDG  274 (342)
T ss_pred             ECCCccCC
Confidence            98888864

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=98.29  E-value=2.1e-06  Score=74.23  Aligned_cols=65  Identities=25%  Similarity=0.460  Sum_probs=55.5

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCCCCCC--CEEEe
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPEG--DAILM  261 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~p~~--D~~~l  261 (273)
                      ...+|+|+|||+|.++..+++.+|+.+++++|. |.+++.++..      ++++++.+|++++++..  |++++
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~  160 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVS  160 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEE
Confidence            446899999999999999999999999999998 8777766542      57999999999877643  99887

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=98.28  E-value=2.5e-06  Score=69.92  Aligned_cols=73  Identities=22%  Similarity=0.292  Sum_probs=59.9

Q ss_pred             HhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCC---CCCCCE
Q 024046          189 LEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES---VPEGDA  258 (273)
Q Consensus       189 l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~---~p~~D~  258 (273)
                      +..+. +.+..+++|||||+|..+++++...|..+++.+|. ++.++..+.+      ++++++.||.-+.   .|+.|+
T Consensus        27 ls~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~da  105 (187)
T COG2242          27 LSKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDA  105 (187)
T ss_pred             HHhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCE
Confidence            45555 67788999999999999999999999999999997 6666655432      8999999999874   444599


Q ss_pred             EEec
Q 024046          259 ILMK  262 (273)
Q Consensus       259 ~~l~  262 (273)
                      +|+.
T Consensus       106 iFIG  109 (187)
T COG2242         106 IFIG  109 (187)
T ss_pred             EEEC
Confidence            9875

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=98.28  E-value=1.4e-06  Score=72.93  Aligned_cols=66  Identities=17%  Similarity=0.348  Sum_probs=53.5

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC------CCCceEEEcccCC-C---CCCC--CEEEec
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE-S---VPEG--DAILMK  262 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gD~f~-~---~p~~--D~~~l~  262 (273)
                      ...++||||||+|.++..+++++|+.+++++|+ +.+++.|..      .++|+++.+|+.+ +   .|.+  |.+++.
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~   94 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN   94 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence            456999999999999999999999999999998 777776643      2689999999975 1   4443  766654

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.27  E-value=2.9e-06  Score=71.58  Aligned_cols=82  Identities=17%  Similarity=0.140  Sum_probs=62.8

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCCC--
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE--  255 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p~--  255 (273)
                      .+++.++ ..+..+|||||||+|..+..+++..+ ..+++.+|. |.+++.|+++       ++++++.+|+.+.+|.  
T Consensus        63 ~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~  141 (205)
T PRK13944         63 MMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHA  141 (205)
T ss_pred             HHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCC
Confidence            3445554 55668999999999999999998875 557899998 7777766542       4689999999875542  


Q ss_pred             -CCEEEecccccccC
Q 024046          256 -GDAILMKVGNFENY  269 (273)
Q Consensus       256 -~D~~~l~~vLHd~~  269 (273)
                       .|++++...++..+
T Consensus       142 ~fD~Ii~~~~~~~~~  156 (205)
T PRK13944        142 PFDAIIVTAAASTIP  156 (205)
T ss_pred             CccEEEEccCcchhh
Confidence             39999988876554

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.26  E-value=4.5e-06  Score=70.79  Aligned_cols=82  Identities=16%  Similarity=0.242  Sum_probs=64.0

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCCCC-CC
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP-EG  256 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~p-~~  256 (273)
                      ..++..++ .++..+|||||||+|..+..+++.. ++.+++.+|. |.+++.+++.      ++|+++.+|.+...+ .+
T Consensus        66 ~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~  144 (212)
T PRK13942         66 AIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENA  144 (212)
T ss_pred             HHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCC
Confidence            34556665 6778999999999999999998886 4568999998 8888777642      679999999987544 33


Q ss_pred             --CEEEeccccccc
Q 024046          257 --DAILMKVGNFEN  268 (273)
Q Consensus       257 --D~~~l~~vLHd~  268 (273)
                        |+|++....++.
T Consensus       145 ~fD~I~~~~~~~~~  158 (212)
T PRK13942        145 PYDRIYVTAAGPDI  158 (212)
T ss_pred             CcCEEEECCCcccc
Confidence              999987766554

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=98.26  E-value=2.1e-06  Score=72.26  Aligned_cols=75  Identities=20%  Similarity=0.333  Sum_probs=58.5

Q ss_pred             HHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC------CCCceEEEcccCC--C--CCCC
Q 024046          188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE--S--VPEG  256 (273)
Q Consensus       188 il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gD~f~--~--~p~~  256 (273)
                      +.+.+.  ....+|||||||+|.++..+++.+|+.+++++|. |.+++.++.      .++++++.+|+.+  +  ++.+
T Consensus        33 ~~~~~~--~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~  110 (202)
T PRK00121         33 WAELFG--NDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDG  110 (202)
T ss_pred             HHHHcC--CCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCcc
Confidence            344444  2568999999999999999999999999999998 888877653      2679999999933  3  5443


Q ss_pred             --CEEEeccc
Q 024046          257 --DAILMKVG  264 (273)
Q Consensus       257 --D~~~l~~v  264 (273)
                        |++++...
T Consensus       111 ~~D~V~~~~~  120 (202)
T PRK00121        111 SLDRIYLNFP  120 (202)
T ss_pred             ccceEEEECC
Confidence              98887543

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.26  E-value=1.9e-06  Score=81.75  Aligned_cols=84  Identities=17%  Similarity=0.265  Sum_probs=65.9

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----CCCceEEEcccCC---CCCCC
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE---SVPEG  256 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~ri~~~~gD~f~---~~p~~  256 (273)
                      .+.+++.++ ..+..+|||||||+|.++..+++.+.  +++++|. |.+++.+..    .++++++.+|+..   ++|.+
T Consensus        26 ~~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~  102 (475)
T PLN02336         26 RPEILSLLP-PYEGKSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDG  102 (475)
T ss_pred             hhHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCC
Confidence            345566665 44567999999999999999999865  5799998 777776542    2679999999964   45643


Q ss_pred             --CEEEecccccccCCC
Q 024046          257 --DAILMKVGNFENYQS  271 (273)
Q Consensus       257 --D~~~l~~vLHd~~~~  271 (273)
                        |+|++..++|..+++
T Consensus       103 ~fD~I~~~~~l~~l~~~  119 (475)
T PLN02336        103 SVDLIFSNWLLMYLSDK  119 (475)
T ss_pred             CEEEEehhhhHHhCCHH
Confidence              999999999998874

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=98.24  E-value=3.2e-06  Score=72.21  Aligned_cols=76  Identities=22%  Similarity=0.287  Sum_probs=66.3

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCC------CeEEEeec-hHHHHhCCCC---------CCceEEEcccCC-CCCCC--C
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQ------IKAVNFDL-PHVVQDAPSY---------AGVEHVGGNMFE-SVPEG--D  257 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~------l~~~~~Dl-p~v~~~a~~~---------~ri~~~~gD~f~-~~p~~--D  257 (273)
                      +.-++|||+||+|..+..+++.-++      .+++++|. |.+++.+.+.         .|+.++.||.-. |+|..  |
T Consensus       100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D  179 (296)
T KOG1540|consen  100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFD  179 (296)
T ss_pred             CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcce
Confidence            4579999999999999999999998      78999998 9988877542         569999999988 88865  9


Q ss_pred             EEEecccccccCCCC
Q 024046          258 AILMKVGNFENYQSH  272 (273)
Q Consensus       258 ~~~l~~vLHd~~~~~  272 (273)
                      .|++.--+-+|++.+
T Consensus       180 ~yTiafGIRN~th~~  194 (296)
T KOG1540|consen  180 AYTIAFGIRNVTHIQ  194 (296)
T ss_pred             eEEEecceecCCCHH
Confidence            999999999998753

>TIGR00452 methyltransferase, putative

Probab=98.24  E-value=3e-06  Score=75.94  Aligned_cols=83  Identities=13%  Similarity=0.060  Sum_probs=60.7

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhC-------CCCCCceEEEcccCC-CCCCC-
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDA-------PSYAGVEHVGGNMFE-SVPEG-  256 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a-------~~~~ri~~~~gD~f~-~~p~~-  256 (273)
                      .++..++ .....+|+|||||+|.++..++...+. +++++|. +.++..+       ....++.+.++|+-+ +.+.. 
T Consensus       112 ~~l~~l~-~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~F  189 (314)
T TIGR00452       112 RVLPHLS-PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAF  189 (314)
T ss_pred             HHHHhcC-CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCc
Confidence            4555554 344589999999999999999998875 6899997 5454322       123678888888754 22233 


Q ss_pred             CEEEecccccccCCC
Q 024046          257 DAILMKVGNFENYQS  271 (273)
Q Consensus       257 D~~~l~~vLHd~~~~  271 (273)
                      |+|++..+||++.+.
T Consensus       190 D~V~s~gvL~H~~dp  204 (314)
T TIGR00452       190 DTVFSMGVLYHRKSP  204 (314)
T ss_pred             CEEEEcchhhccCCH
Confidence            999999999988764

Known examples to date are restricted to the proteobacteria.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=98.24  E-value=1.5e-06  Score=74.72  Aligned_cols=75  Identities=16%  Similarity=0.309  Sum_probs=59.3

Q ss_pred             HHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC---CCCCC
Q 024046          188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE---SVPEG  256 (273)
Q Consensus       188 il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~---~~p~~  256 (273)
                      ++..+...+...+|+|+|+|+|..+..+++++|+.+.+++|+ +...+.|+..       +||+++.+|+-.   ..+.+
T Consensus        35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~  114 (248)
T COG4123          35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFA  114 (248)
T ss_pred             HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccccc
Confidence            344443244589999999999999999999999999999999 7777777642       899999999976   23333


Q ss_pred             --CEEEec
Q 024046          257 --DAILMK  262 (273)
Q Consensus       257 --D~~~l~  262 (273)
                        |+|++.
T Consensus       115 ~fD~Ii~N  122 (248)
T COG4123         115 SFDLIICN  122 (248)
T ss_pred             ccCEEEeC
Confidence              888874

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.23  E-value=1.8e-06  Score=76.61  Aligned_cols=81  Identities=15%  Similarity=0.148  Sum_probs=61.0

Q ss_pred             HHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCCC-CCCC-CEE
Q 024046          188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFES-VPEG-DAI  259 (273)
Q Consensus       188 il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~~-~p~~-D~~  259 (273)
                      ++..++ .....+|||||||+|..+..+++.  ..+++++|. |.+++.++..     -++++..+|+... +++. |+|
T Consensus       112 ~~~~~~-~~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I  188 (287)
T PRK12335        112 VLEAVQ-TVKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFI  188 (287)
T ss_pred             HHHHhh-ccCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEE
Confidence            344444 334569999999999999999886  578999998 7777766432     3688889998773 4444 999


Q ss_pred             EecccccccCCC
Q 024046          260 LMKVGNFENYQS  271 (273)
Q Consensus       260 ~l~~vLHd~~~~  271 (273)
                      ++..+||..+++
T Consensus       189 ~~~~vl~~l~~~  200 (287)
T PRK12335        189 LSTVVLMFLNRE  200 (287)
T ss_pred             EEcchhhhCCHH
Confidence            999999976643

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.22  E-value=3.3e-06  Score=77.36  Aligned_cols=75  Identities=13%  Similarity=0.245  Sum_probs=57.3

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC------CCCceEEEcccC---CCCCCC
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMF---ESVPEG  256 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gD~f---~~~p~~  256 (273)
                      .+++.+. -.....+||||||+|.++..+++++|+..++++|+ +.++..+..      .++|.++.+|..   ..+|.+
T Consensus       113 ~~~~~~~-~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~  191 (390)
T PRK14121        113 NFLDFIS-KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN  191 (390)
T ss_pred             HHHHHhc-CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence            3445544 33456899999999999999999999999999998 555555432      267999999984   356754


Q ss_pred             --CEEEec
Q 024046          257 --DAILMK  262 (273)
Q Consensus       257 --D~~~l~  262 (273)
                        |.+++.
T Consensus       192 s~D~I~ln  199 (390)
T PRK14121        192 SVEKIFVH  199 (390)
T ss_pred             ceeEEEEe
Confidence              888764

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=98.21  E-value=5.7e-06  Score=70.27  Aligned_cols=80  Identities=15%  Similarity=0.195  Sum_probs=62.0

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCCC------CCceEEEcccCCCCC--C-
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP--E-  255 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~p--~-  255 (273)
                      .+++.++ ..+..+|||||||+|.++..+++..+ +.+++.+|. |++++.|+.+      ++++++.+|.....+  . 
T Consensus        68 ~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~  146 (215)
T TIGR00080        68 MMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAP  146 (215)
T ss_pred             HHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCC
Confidence            4455555 66778999999999999999999875 467899997 8888877642      679999999987443  2 


Q ss_pred             CCEEEecccccc
Q 024046          256 GDAILMKVGNFE  267 (273)
Q Consensus       256 ~D~~~l~~vLHd  267 (273)
                      .|++++....+.
T Consensus       147 fD~Ii~~~~~~~  158 (215)
T TIGR00080       147 YDRIYVTAAGPK  158 (215)
T ss_pred             CCEEEEcCCccc
Confidence            399998765443

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=98.20  E-value=3.8e-06  Score=77.53  Aligned_cols=67  Identities=27%  Similarity=0.410  Sum_probs=56.1

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCCC-CC-C--CCEEEec
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFES-VP-E--GDAILMK  262 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~~-~p-~--~D~~~l~  262 (273)
                      ++..+|+|||||+|.++..+++++|+.+++++|. |.+++.|+++     .+|+++.+|++++ .| .  .|++++.
T Consensus       250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSN  326 (423)
T PRK14966        250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSN  326 (423)
T ss_pred             CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEEC
Confidence            3456899999999999999999999999999999 8888877653     4799999999874 44 2  2988873

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.20  E-value=5.3e-06  Score=67.71  Aligned_cols=77  Identities=9%  Similarity=0.291  Sum_probs=58.1

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----CCCceEEEcccCC-CCCCC--C
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE-SVPEG--D  257 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~ri~~~~gD~f~-~~p~~--D  257 (273)
                      +.+++.++ +.+..+++|||||+|.++..++++  ..+++++|. +.+++.+++    .++++++.+|+.+ +.+..  |
T Consensus         3 ~~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d   79 (169)
T smart00650        3 DKIVRAAN-LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPY   79 (169)
T ss_pred             HHHHHhcC-CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCC
Confidence            45566666 667789999999999999999998  467899998 667766553    3689999999998 55543  7


Q ss_pred             EEEeccccc
Q 024046          258 AILMKVGNF  266 (273)
Q Consensus       258 ~~~l~~vLH  266 (273)
                      .++ .+.-+
T Consensus        80 ~vi-~n~Py   87 (169)
T smart00650       80 KVV-GNLPY   87 (169)
T ss_pred             EEE-ECCCc
Confidence            664 44433

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.20  E-value=2.2e-06  Score=81.82  Aligned_cols=64  Identities=19%  Similarity=0.328  Sum_probs=55.6

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCCC--CCEEEe
Q 024046          198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE--GDAILM  261 (273)
Q Consensus       198 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p~--~D~~~l  261 (273)
                      ..+|||||||+|.++..+++++|+.+++++|+ |.+++.|+.+       ++|+++.+|++++++.  .|++++
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvs  212 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVS  212 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEE
Confidence            46899999999999999999999999999998 8888877642       5899999999987664  399887

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.19  E-value=5.6e-06  Score=72.68  Aligned_cols=68  Identities=26%  Similarity=0.472  Sum_probs=56.7

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCCCCC-C-CEEEec
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE-G-DAILMK  262 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~p~-~-D~~~l~  262 (273)
                      ..+..+|+|+|||+|..+..+++.+|+.+++++|. |..++.++.+      .+++++.+|++.+.+. . |+++..
T Consensus       106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~n  182 (275)
T PRK09328        106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSN  182 (275)
T ss_pred             ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEEC
Confidence            34567899999999999999999999999999998 7777766542      5899999999987663 3 998773

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.17  E-value=2.5e-06  Score=76.51  Aligned_cols=72  Identities=13%  Similarity=0.028  Sum_probs=57.6

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----------CCceEEEcccCCCCCC-CCEEEecc
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----------AGVEHVGGNMFESVPE-GDAILMKV  263 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----------~ri~~~~gD~f~~~p~-~D~~~l~~  263 (273)
                      +..+|||||||+|.++..++++  ..+++++|+ |.+++.++++           .++++..+|+.. ++. .|+|++..
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~-l~~~fD~Vv~~~  220 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES-LSGKYDTVTCLD  220 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh-cCCCcCEEEEcC
Confidence            3579999999999999999986  568999998 7788766542           257888888754 343 39999999


Q ss_pred             cccccCCC
Q 024046          264 GNFENYQS  271 (273)
Q Consensus       264 vLHd~~~~  271 (273)
                      +||+++++
T Consensus       221 vL~H~p~~  228 (315)
T PLN02585        221 VLIHYPQD  228 (315)
T ss_pred             EEEecCHH
Confidence            99888765

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=98.16  E-value=5.7e-06  Score=68.11  Aligned_cols=72  Identities=19%  Similarity=0.321  Sum_probs=57.8

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCCCCCC-CCEEEecccccccC
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPE-GDAILMKVGNFENY  269 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~~~p~-~D~~~l~~vLHd~~  269 (273)
                      +..+|+|+|||+|.++..+++..+  +++++|+ |.+++.++.+     .+++++.+|+++..+. .|++++.-..|..+
T Consensus        19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~   96 (179)
T TIGR00537        19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLE   96 (179)
T ss_pred             CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCc
Confidence            446899999999999999999987  7999998 8888776642     3588999999874443 49999887776554


Q ss_pred             C
Q 024046          270 Q  270 (273)
Q Consensus       270 ~  270 (273)
                      +
T Consensus        97 ~   97 (179)
T TIGR00537        97 D   97 (179)
T ss_pred             c
Confidence            3

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.15  E-value=7.6e-06  Score=72.04  Aligned_cols=66  Identities=20%  Similarity=0.315  Sum_probs=55.0

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCC---eEEEeec-hHHHHhCCCC-CCceEEEcccCC-CCCCC--CEEEec
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQI---KAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG--DAILMK  262 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l---~~~~~Dl-p~v~~~a~~~-~ri~~~~gD~f~-~~p~~--D~~~l~  262 (273)
                      ...+|||||||+|.++..+++.+|+.   +++++|+ |.+++.|.+. ++++++.+|..+ |++.+  |+|+..
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~  158 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRI  158 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEe
Confidence            45789999999999999999998864   5799998 8888887654 789999999987 66653  998864

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.15  E-value=7.1e-06  Score=71.43  Aligned_cols=66  Identities=21%  Similarity=0.315  Sum_probs=54.4

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC---CCceEEEcccCCCCC----CC-CEEEec
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFESVP----EG-DAILMK  262 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~---~ri~~~~gD~f~~~p----~~-D~~~l~  262 (273)
                      ...+|||+|||+|.++..+++++|..+++++|. |.+++.|+.+   .+++++.+|+++.++    .. |++++.
T Consensus        86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~N  160 (251)
T TIGR03704        86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAAN  160 (251)
T ss_pred             CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEEC
Confidence            345899999999999999999999999999998 8888877753   447899999987544    22 887754

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>TIGR03438 probable methyltransferase

Probab=98.15  E-value=4.4e-06  Score=74.64  Aligned_cols=76  Identities=11%  Similarity=0.142  Sum_probs=58.2

Q ss_pred             CcceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCCC-----C--CceEEEcccCCC--CCC-----C-CEE
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-----A--GVEHVGGNMFES--VPE-----G-DAI  259 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~~-----~--ri~~~~gD~f~~--~p~-----~-D~~  259 (273)
                      ...+|||+|||+|..+..|+++.+ ..+.+++|+ +++++.+...     +  +|.++.|||.+.  ++.     . .++
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~  142 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF  142 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence            457899999999999999999998 588999999 7777666432     3  467789999873  332     1 356


Q ss_pred             EecccccccCCCC
Q 024046          260 LMKVGNFENYQSH  272 (273)
Q Consensus       260 ~l~~vLHd~~~~~  272 (273)
                      ++.+.+|++++++
T Consensus       143 ~~gs~~~~~~~~e  155 (301)
T TIGR03438       143 FPGSTIGNFTPEE  155 (301)
T ss_pred             EecccccCCCHHH
Confidence            6778888887653

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.12  E-value=4.5e-06  Score=68.90  Aligned_cols=71  Identities=21%  Similarity=0.375  Sum_probs=55.7

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCCCCceEEEcccCC---CCCCC--CEEEeccccccc
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE---SVPEG--DAILMKVGNFEN  268 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gD~f~---~~p~~--D~~~l~~vLHd~  268 (273)
                      ++..+|||+|||.|.++..|.+. .++++.++|+ ++-+..+. ..+++++.+|+-+   .+|..  |.++|++.|-..
T Consensus        12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv-~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~   88 (193)
T PF07021_consen   12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACV-ARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAV   88 (193)
T ss_pred             CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHH-HcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhH
Confidence            46699999999999999877775 6999999998 44343333 3679999999987   46753  999999987543

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK07402 precorrin-6B methylase; Provisional

Probab=98.11  E-value=8.6e-06  Score=68.08  Aligned_cols=73  Identities=18%  Similarity=0.250  Sum_probs=56.7

Q ss_pred             HHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCC---CCCC-C
Q 024046          188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE---SVPE-G  256 (273)
Q Consensus       188 il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~---~~p~-~  256 (273)
                      ++..++ .....+|||||||+|.++..+++..|+.+++++|+ |.+++.++++      ++|+++.+|...   .++. .
T Consensus        32 l~~~l~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~  110 (196)
T PRK07402         32 LISQLR-LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAP  110 (196)
T ss_pred             HHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCC
Confidence            445554 55678999999999999999999999999999998 8888877542      579999999865   2322 3


Q ss_pred             CEEEe
Q 024046          257 DAILM  261 (273)
Q Consensus       257 D~~~l  261 (273)
                      |.+++
T Consensus       111 d~v~~  115 (196)
T PRK07402        111 DRVCI  115 (196)
T ss_pred             CEEEE
Confidence            66554

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=98.08  E-value=5.4e-06  Score=62.95  Aligned_cols=68  Identities=25%  Similarity=0.349  Sum_probs=54.4

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcccCC-C--CCCC--CEEEecccc
Q 024046          199 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFE-S--VPEG--DAILMKVGN  265 (273)
Q Consensus       199 ~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gD~f~-~--~p~~--D~~~l~~vL  265 (273)
                      .+|||+|||+|.++..+++.. ..+++++|+ |..++.++.       .+|++++.+|+++ .  .+.+  |+|++.--.
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~   80 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY   80 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred             CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence            589999999999999999999 889999999 888776654       2789999999987 2  4543  999886544


Q ss_pred             cc
Q 024046          266 FE  267 (273)
Q Consensus       266 Hd  267 (273)
                      +.
T Consensus        81 ~~   82 (117)
T PF13659_consen   81 GP   82 (117)
T ss_dssp             TS
T ss_pred             cc
Confidence            43

...

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.07  E-value=1.8e-05  Score=63.24  Aligned_cols=70  Identities=19%  Similarity=0.289  Sum_probs=50.9

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCCCCceEEEcccCC-CCCCC--CEEEecccccccCC
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILMKVGNFENYQ  270 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gD~f~-~~p~~--D~~~l~~vLHd~~~  270 (273)
                      .....+|||||||.|.++..+.+..+  +++++|. |.+++.    ..+.....+.-. +.|.+  |+|++.++||+.+|
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d   93 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD   93 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhccc
Confidence            45678999999999999999966644  8999998 777776    223333222223 23433  99999999999875

...

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.07  E-value=1.4e-05  Score=69.79  Aligned_cols=80  Identities=19%  Similarity=0.335  Sum_probs=59.5

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----CCCceEEEcccCC-CCCCCCE
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE-SVPEGDA  258 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~ri~~~~gD~f~-~~p~~D~  258 (273)
                      +..+++..+ ..+..+|||||||.|.++..++++.  .+++++|+ +.+++.++.    .++++++.+|+++ ++|..|.
T Consensus        18 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~   94 (258)
T PRK14896         18 VDRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNK   94 (258)
T ss_pred             HHHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceE
Confidence            345566555 5667899999999999999999994  46899998 667766543    3789999999998 5665575


Q ss_pred             EEeccccccc
Q 024046          259 ILMKVGNFEN  268 (273)
Q Consensus       259 ~~l~~vLHd~  268 (273)
                      ++ +|.-++.
T Consensus        95 Vv-~NlPy~i  103 (258)
T PRK14896         95 VV-SNLPYQI  103 (258)
T ss_pred             EE-EcCCccc
Confidence            54 3444443

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=98.06  E-value=1.3e-05  Score=70.34  Aligned_cols=85  Identities=19%  Similarity=0.138  Sum_probs=65.9

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC------C-CCceEEEcccCCCCCCC
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------Y-AGVEHVGGNMFESVPEG  256 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~-~ri~~~~gD~f~~~p~~  256 (273)
                      .+.+++.+. +++..+|||||||-|.+++-.+++| +.+++++++ ++..+.+++      . ++|++...|+-...+.-
T Consensus        61 ~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~f  138 (283)
T COG2230          61 LDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPF  138 (283)
T ss_pred             HHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccccc
Confidence            456778887 9999999999999999999999999 999999999 555555543      1 58999898887633335


Q ss_pred             CEEEecccccccCCC
Q 024046          257 DAILMKVGNFENYQS  271 (273)
Q Consensus       257 D~~~l~~vLHd~~~~  271 (273)
                      |-|+-.-++++...+
T Consensus       139 DrIvSvgmfEhvg~~  153 (283)
T COG2230         139 DRIVSVGMFEHVGKE  153 (283)
T ss_pred             ceeeehhhHHHhCcc
Confidence            777776666655443

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.06  E-value=1.2e-05  Score=70.71  Aligned_cols=63  Identities=11%  Similarity=0.276  Sum_probs=52.1

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC---CCceEEEcccCC
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE  251 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~---~ri~~~~gD~f~  251 (273)
                      ..+++.++ .....+|||||||+|.++..++++.+  +++++|. |.+++.+++.   ++++++.+|+.+
T Consensus        32 ~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~   98 (272)
T PRK00274         32 DKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALK   98 (272)
T ss_pred             HHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhc
Confidence            44556555 66678999999999999999999987  6899998 7777776542   689999999987

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.03  E-value=2.2e-05  Score=69.09  Aligned_cols=80  Identities=25%  Similarity=0.307  Sum_probs=62.3

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCCCCC-CC
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE-GD  257 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~p~-~D  257 (273)
                      +-+++.++ .....+|+|+|||.|.+++.+++.+|+.+.+.+|. ...++.|+.+      ++..+...|.|++.+. -|
T Consensus       148 ~lLl~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd  226 (300)
T COG2813         148 RLLLETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKFD  226 (300)
T ss_pred             HHHHHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccccccc
Confidence            34667776 44445999999999999999999999999999998 6667777653      3336888999998765 49


Q ss_pred             EEEeccccc
Q 024046          258 AILMKVGNF  266 (273)
Q Consensus       258 ~~~l~~vLH  266 (273)
                      .|++.==+|
T Consensus       227 ~IisNPPfh  235 (300)
T COG2813         227 LIISNPPFH  235 (300)
T ss_pred             EEEeCCCcc
Confidence            988765444

>PHA03411 putative methyltransferase; Provisional

Probab=98.03  E-value=1.4e-05  Score=69.93  Aligned_cols=71  Identities=17%  Similarity=0.203  Sum_probs=58.2

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-CCceEEEcccCCCCC-C-CCEEEecccccc
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFESVP-E-GDAILMKVGNFE  267 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-~ri~~~~gD~f~~~p-~-~D~~~l~~vLHd  267 (273)
                      ...+|||+|||+|.++..++++.+..+++++|+ |.+++.++.. ++++++.+|+++... . .|+|+..--.+.
T Consensus        64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~  138 (279)
T PHA03411         64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGK  138 (279)
T ss_pred             cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccc
Confidence            346899999999999999999998889999998 8888887754 789999999998433 3 399998554443

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=97.99  E-value=5.5e-06  Score=70.47  Aligned_cols=74  Identities=14%  Similarity=-0.011  Sum_probs=56.8

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCCCCce-----EEEcccCC-CCC--CCCEEEecccccc
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVE-----HVGGNMFE-SVP--EGDAILMKVGNFE  267 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~-----~~~gD~f~-~~p--~~D~~~l~~vLHd  267 (273)
                      ...+|||||||.|.++..+++.-  .++++.|+ +..|+.|+.+...+     +.+..... ...  ..|+|++..||++
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH  136 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH  136 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence            45899999999999999999996  78999998 88899888663333     33333333 222  2399999999999


Q ss_pred             cCCCC
Q 024046          268 NYQSH  272 (273)
Q Consensus       268 ~~~~~  272 (273)
                      .+|++
T Consensus       137 v~dp~  141 (243)
T COG2227         137 VPDPE  141 (243)
T ss_pred             cCCHH
Confidence            99874

>TIGR00755 ksgA dimethyladenosine transferase

Probab=97.98  E-value=1e-05  Score=70.50  Aligned_cols=82  Identities=12%  Similarity=0.309  Sum_probs=60.9

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----CCCceEEEcccCC-CCCCCC-
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE-SVPEGD-  257 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~ri~~~~gD~f~-~~p~~D-  257 (273)
                      ...+++..+ ..+..+|+|||||+|.++..++++++.  ++++|. +.+++.++.    .++++++.+|+.+ +++..| 
T Consensus        18 ~~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~~--v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d~   94 (253)
T TIGR00755        18 IQKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAKK--VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFPK   94 (253)
T ss_pred             HHHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCCc--EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcCC
Confidence            345666665 667789999999999999999999975  788887 666665543    3789999999988 555433 


Q ss_pred             -EEEecccccccC
Q 024046          258 -AILMKVGNFENY  269 (273)
Q Consensus       258 -~~~l~~vLHd~~  269 (273)
                       .++++|.-++++
T Consensus        95 ~~~vvsNlPy~i~  107 (253)
T TIGR00755        95 QLKVVSNLPYNIS  107 (253)
T ss_pred             cceEEEcCChhhH
Confidence             456666554443

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=97.96  E-value=4.8e-05  Score=64.39  Aligned_cols=77  Identities=14%  Similarity=0.218  Sum_probs=56.6

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeechHHHHhCCCCCCceEEEcccCCC---------CCC-
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFES---------VPE-  255 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dlp~v~~~a~~~~ri~~~~gD~f~~---------~p~-  255 (273)
                      .+.+.+..+++..+|||||||+|.++..++++. |..+++++|+-++    ...++|+++.+|+.++         .+. 
T Consensus        41 ~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~----~~~~~v~~i~~D~~~~~~~~~i~~~~~~~  116 (209)
T PRK11188         41 EIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM----DPIVGVDFLQGDFRDELVLKALLERVGDS  116 (209)
T ss_pred             HHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc----cCCCCcEEEecCCCChHHHHHHHHHhCCC
Confidence            344445434567899999999999999999987 4568999999442    2236799999999873         443 


Q ss_pred             C-CEEEecccccc
Q 024046          256 G-DAILMKVGNFE  267 (273)
Q Consensus       256 ~-D~~~l~~vLHd  267 (273)
                      . |+|+.....|.
T Consensus       117 ~~D~V~S~~~~~~  129 (209)
T PRK11188        117 KVQVVMSDMAPNM  129 (209)
T ss_pred             CCCEEecCCCCcc
Confidence            3 99998655443

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=97.94  E-value=4.2e-05  Score=64.69  Aligned_cols=79  Identities=19%  Similarity=0.302  Sum_probs=59.4

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCCCCC-C--
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE-G--  256 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~p~-~--  256 (273)
                      .++..+. ..+..+|||||||+|.++..+++...  +++.+|. |.+++.+++.      ++++++.+|.++.++. +  
T Consensus        69 ~l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  145 (212)
T PRK00312         69 RMTELLE-LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPF  145 (212)
T ss_pred             HHHHhcC-CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCc
Confidence            3444444 56778999999999999988887764  6888887 7777766542      5699999999886553 3  


Q ss_pred             CEEEeccccccc
Q 024046          257 DAILMKVGNFEN  268 (273)
Q Consensus       257 D~~~l~~vLHd~  268 (273)
                      |++++...+++.
T Consensus       146 D~I~~~~~~~~~  157 (212)
T PRK00312        146 DRILVTAAAPEI  157 (212)
T ss_pred             CEEEEccCchhh
Confidence            999988766544

>PLN02366 spermidine synthase

Probab=97.94  E-value=1.7e-05  Score=70.94  Aligned_cols=67  Identities=25%  Similarity=0.293  Sum_probs=52.7

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcccCC---CCCC--CCE
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFE---SVPE--GDA  258 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------~~ri~~~~gD~f~---~~p~--~D~  258 (273)
                      .+++++||+||||.|..+..+++..+-.+++++|+ |.|++.+++          .+|++++.+|.+.   ..+.  -|+
T Consensus        89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv  168 (308)
T PLN02366         89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA  168 (308)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence            35689999999999999999987633457899998 778887654          2699999999865   3443  399


Q ss_pred             EEe
Q 024046          259 ILM  261 (273)
Q Consensus       259 ~~l  261 (273)
                      |++
T Consensus       169 Ii~  171 (308)
T PLN02366        169 IIV  171 (308)
T ss_pred             EEE
Confidence            987

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=97.93  E-value=3e-05  Score=71.62  Aligned_cols=82  Identities=16%  Similarity=0.106  Sum_probs=63.0

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC---CCceEEEcccCCCCCC-CCEEE
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFESVPE-GDAIL  260 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~---~ri~~~~gD~f~~~p~-~D~~~  260 (273)
                      ..+++.++ .++..+|||||||.|.++..+++.+ +.+++++|+ |..++.|++.   ..+++..+|+.. .+. .|+|+
T Consensus       157 ~~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~-l~~~fD~Iv  233 (383)
T PRK11705        157 DLICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRD-LNGQFDRIV  233 (383)
T ss_pred             HHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhh-cCCCCCEEE
Confidence            34556655 6677899999999999999999876 578999998 7888776642   347888888764 343 39999


Q ss_pred             ecccccccCC
Q 024046          261 MKVGNFENYQ  270 (273)
Q Consensus       261 l~~vLHd~~~  270 (273)
                      ...++++..+
T Consensus       234 s~~~~ehvg~  243 (383)
T PRK11705        234 SVGMFEHVGP  243 (383)
T ss_pred             EeCchhhCCh
Confidence            8888877654

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=97.92  E-value=2e-05  Score=69.47  Aligned_cols=82  Identities=17%  Similarity=0.181  Sum_probs=56.0

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcccCCCCCCC
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFESVPEG  256 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gD~f~~~p~~  256 (273)
                      ...+++.++ +++..+|||||||-|.+++.++++| +++++++.+ ++-.+.+++       .++|++..+|+.+ ++..
T Consensus        51 ~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~-~~~~  127 (273)
T PF02353_consen   51 LDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD-LPGK  127 (273)
T ss_dssp             HHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----S
T ss_pred             HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc-cCCC
Confidence            356677777 8889999999999999999999999 899999998 444444432       2789999999875 5544


Q ss_pred             -CEEEecccccccC
Q 024046          257 -DAILMKVGNFENY  269 (273)
Q Consensus       257 -D~~~l~~vLHd~~  269 (273)
                       |.|+..-++-+..
T Consensus       128 fD~IvSi~~~Ehvg  141 (273)
T PF02353_consen  128 FDRIVSIEMFEHVG  141 (273)
T ss_dssp             -SEEEEESEGGGTC
T ss_pred             CCEEEEEechhhcC
Confidence             8887776665543

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=97.91  E-value=2.8e-05  Score=65.97  Aligned_cols=74  Identities=14%  Similarity=0.141  Sum_probs=57.4

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC------------------CCCceEEEcccCCCCC--
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------------------YAGVEHVGGNMFESVP--  254 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------------------~~ri~~~~gD~f~~~p--  254 (273)
                      +...++||+|||.|..+.-|+++  ..+++++|+ |..++.+..                  ..+|+++.+|+|+..+  
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~  110 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD  110 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence            45679999999999999999986  678999998 777775311                  2479999999998322  


Q ss_pred             --CCCEEEecccccccCCC
Q 024046          255 --EGDAILMKVGNFENYQS  271 (273)
Q Consensus       255 --~~D~~~l~~vLHd~~~~  271 (273)
                        .-|+++-+.++|..+++
T Consensus       111 ~~~fD~i~D~~~~~~l~~~  129 (213)
T TIGR03840       111 LGPVDAVYDRAALIALPEE  129 (213)
T ss_pred             CCCcCEEEechhhccCCHH
Confidence              23999988888766543

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK04266 fibrillarin; Provisional

Probab=97.90  E-value=7.9e-05  Score=63.84  Aligned_cols=69  Identities=14%  Similarity=0.216  Sum_probs=54.0

Q ss_pred             cccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHH----hCCCCCCceEEEcccCCC-----CCCC-CEEE
Q 024046          192 YEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQ----DAPSYAGVEHVGGNMFES-----VPEG-DAIL  260 (273)
Q Consensus       192 ~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~----~a~~~~ri~~~~gD~f~~-----~p~~-D~~~  260 (273)
                      ++ ..+..+|+|+|||+|.++..+++..+.-+++++|. |.+++    .++..++|.++.+|...+     +++. |+++
T Consensus        68 l~-i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~  146 (226)
T PRK04266         68 FP-IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIY  146 (226)
T ss_pred             CC-CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEE
Confidence            44 66778999999999999999999998768899998 75554    444457899999998753     2333 8887


Q ss_pred             e
Q 024046          261 M  261 (273)
Q Consensus       261 l  261 (273)
                      .
T Consensus       147 ~  147 (226)
T PRK04266        147 Q  147 (226)
T ss_pred             E
Confidence            3

>PRK00811 spermidine synthase; Provisional

Probab=97.85  E-value=2.3e-05  Score=69.38  Aligned_cols=67  Identities=27%  Similarity=0.303  Sum_probs=54.4

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-----------CCCceEEEcccCCC--CCC-C-CEE
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFES--VPE-G-DAI  259 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----------~~ri~~~~gD~f~~--~p~-~-D~~  259 (273)
                      +++++||+||||.|..+..+++..+..+++++|+ |.|++.|++           .+|++++.+|...-  .+. . |+|
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  154 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI  154 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence            4678999999999999999998656668999999 888887754           37899999999873  233 2 999


Q ss_pred             Eec
Q 024046          260 LMK  262 (273)
Q Consensus       260 ~l~  262 (273)
                      ++-
T Consensus       155 i~D  157 (283)
T PRK00811        155 IVD  157 (283)
T ss_pred             EEC
Confidence            874

>PRK14968 putative methyltransferase; Provisional

Probab=97.83  E-value=5.3e-05  Score=62.34  Aligned_cols=68  Identities=26%  Similarity=0.399  Sum_probs=54.0

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CC-ceEEEcccCCCCCC--CCEEEeccc
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AG-VEHVGGNMFESVPE--GDAILMKVG  264 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~r-i~~~~gD~f~~~p~--~D~~~l~~v  264 (273)
                      .+..+|||+|||+|.++..++++  ..+++++|+ |.+++.+++.       ++ ++++.+|+++++++  .|++++...
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p   99 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP   99 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence            45578999999999999999998  578999998 7787776431       23 89999999987665  399987544


Q ss_pred             c
Q 024046          265 N  265 (273)
Q Consensus       265 L  265 (273)
                      .
T Consensus       100 ~  100 (188)
T PRK14968        100 Y  100 (188)
T ss_pred             c
Confidence            3

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=97.82  E-value=5.2e-05  Score=54.74  Aligned_cols=68  Identities=25%  Similarity=0.298  Sum_probs=54.2

Q ss_pred             eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCC------CCCCceEEEcccCCCC---CCC-CEEEeccccccc
Q 024046          200 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP------SYAGVEHVGGNMFESV---PEG-DAILMKVGNFEN  268 (273)
Q Consensus       200 ~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~------~~~ri~~~~gD~f~~~---p~~-D~~~l~~vLHd~  268 (273)
                      +++|+|||.|.++..+++ .+..+.+++|+ +..+..++      ...+++++.+|+....   +.. |++++...++.+
T Consensus         1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~   79 (107)
T cd02440           1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL   79 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence            589999999999999998 77889999998 55555443      1378999999999843   233 999999988863

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=97.81  E-value=5e-05  Score=63.20  Aligned_cols=82  Identities=17%  Similarity=0.232  Sum_probs=57.2

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-----CCCceEEEcccCC-CCCCC-CE
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----YAGVEHVGGNMFE-SVPEG-DA  258 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~ri~~~~gD~f~-~~p~~-D~  258 (273)
                      .++...+ .-+..++||||||.|..+.-|+++  ...++.+|. +..++.+..     .-.|+....|+.+ ++|+. |+
T Consensus        21 ~v~~a~~-~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD~   97 (192)
T PF03848_consen   21 EVLEAVP-LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYDF   97 (192)
T ss_dssp             HHHHHCT-TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEEE
T ss_pred             HHHHHHh-hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcCE
Confidence            4555566 446789999999999999999999  677999998 555554432     1238999999987 46655 99


Q ss_pred             EEecccccccCCC
Q 024046          259 ILMKVGNFENYQS  271 (273)
Q Consensus       259 ~~l~~vLHd~~~~  271 (273)
                      |+..-|++.-+.+
T Consensus        98 I~st~v~~fL~~~  110 (192)
T PF03848_consen   98 IVSTVVFMFLQRE  110 (192)
T ss_dssp             EEEESSGGGS-GG
T ss_pred             EEEEEEeccCCHH
Confidence            9887788776654

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=97.81  E-value=9.4e-06  Score=69.74  Aligned_cols=72  Identities=15%  Similarity=0.060  Sum_probs=58.4

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC--------C----CceEEEcccCCCCCCCCEEEeccc
Q 024046          198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------A----GVEHVGGNMFESVPEGDAILMKVG  264 (273)
Q Consensus       198 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~--------~----ri~~~~gD~f~~~p~~D~~~l~~v  264 (273)
                      ..+|||||||.|.++..|++.-  ..++++|. +.+++.|+.+        .    |+++...|.-...+..|+|++..|
T Consensus        90 g~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev  167 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV  167 (282)
T ss_pred             CceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence            3679999999999999999996  56899998 8889888764        2    467776766655555799999999


Q ss_pred             ccccCCC
Q 024046          265 NFENYQS  271 (273)
Q Consensus       265 LHd~~~~  271 (273)
                      |++.-|.
T Consensus       168 leHV~dp  174 (282)
T KOG1270|consen  168 LEHVKDP  174 (282)
T ss_pred             HHHHhCH
Confidence            9988654

>PHA03412 putative methyltransferase; Provisional

Probab=97.80  E-value=5.3e-05  Score=64.86  Aligned_cols=65  Identities=11%  Similarity=0.090  Sum_probs=53.3

Q ss_pred             cceEEEecCCccHHHHHHHHHC---CCCeEEEeec-hHHHHhCCCC-CCceEEEcccCC-CCCC-CCEEEec
Q 024046          198 VERLVDVGGGFGVTLSMITSKY---PQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPE-GDAILMK  262 (273)
Q Consensus       198 ~~~vvDVGGG~G~~~~~l~~~~---P~l~~~~~Dl-p~v~~~a~~~-~ri~~~~gD~f~-~~p~-~D~~~l~  262 (273)
                      ..+|||+|||+|.++..++++.   +..+++++|+ |.+++.|+.. +++.++.+|++. +.+. .|+|+..
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsN  121 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISN  121 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEEC
Confidence            5799999999999999999986   4678999999 8888888764 789999999986 3333 3888763

>PRK14967 putative methyltransferase; Provisional

Probab=97.79  E-value=5e-05  Score=64.82  Aligned_cols=67  Identities=16%  Similarity=0.176  Sum_probs=52.3

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCCCCCC-C-CEEEec
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPE-G-DAILMK  262 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~~~p~-~-D~~~l~  262 (273)
                      ..+..+|||+|||+|.++..+++. +..+++++|+ |..++.++.+     .+++++.+|++..++. . |+|++.
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~n  108 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSN  108 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEEC
Confidence            455679999999999999999886 3347899998 7777765542     3588999999886664 3 999875

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.78  E-value=6.5e-05  Score=67.66  Aligned_cols=80  Identities=24%  Similarity=0.351  Sum_probs=60.2

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhCCC------CCCceEEEcccCCCCCC---
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFESVPE---  255 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~------~~ri~~~~gD~f~~~p~---  255 (273)
                      .+++..+ .++..+|||||||+|.++..+++..+. -+++++|. |++++.|++      .++++++.+|..+..+.   
T Consensus        71 ~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~  149 (322)
T PRK13943         71 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAP  149 (322)
T ss_pred             HHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCC
Confidence            3445444 566789999999999999999999875 46889998 777776654      26799999998774432   


Q ss_pred             CCEEEecccccc
Q 024046          256 GDAILMKVGNFE  267 (273)
Q Consensus       256 ~D~~~l~~vLHd  267 (273)
                      .|++++...+++
T Consensus       150 fD~Ii~~~g~~~  161 (322)
T PRK13943        150 YDVIFVTVGVDE  161 (322)
T ss_pred             ccEEEECCchHH
Confidence            399998755544

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=97.78  E-value=7.9e-05  Score=62.39  Aligned_cols=72  Identities=15%  Similarity=0.181  Sum_probs=55.7

Q ss_pred             hhcccCCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhCCC-------CCCceEEEcccCCC---CCC-C
Q 024046          190 EHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFES---VPE-G  256 (273)
Q Consensus       190 ~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gD~f~~---~p~-~  256 (273)
                      ..++ .....+|+|+|||+|.++..+++.. |..+++.+|. |..++.+++       .++++++.+|+.+.   .+. .
T Consensus        34 ~~l~-~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~  112 (198)
T PRK00377         34 SKLR-LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKF  112 (198)
T ss_pred             HHcC-CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCC
Confidence            3444 6677899999999999999998874 6789999998 888876643       25789999999762   223 3


Q ss_pred             CEEEec
Q 024046          257 DAILMK  262 (273)
Q Consensus       257 D~~~l~  262 (273)
                      |++++.
T Consensus       113 D~V~~~  118 (198)
T PRK00377        113 DRIFIG  118 (198)
T ss_pred             CEEEEC
Confidence            999873

>PRK01581 speE spermidine synthase; Validated

Probab=97.78  E-value=4.5e-05  Score=69.22  Aligned_cols=68  Identities=19%  Similarity=0.197  Sum_probs=55.4

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-------------CCCceEEEcccCCCC---CCC-
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------------YAGVEHVGGNMFESV---PEG-  256 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------------~~ri~~~~gD~f~~~---p~~-  256 (273)
                      ..++.+||+||||.|..+..+++..|..+++++|+ |+|++.|+.             .+|++++.+|.++-+   +.. 
T Consensus       148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y  227 (374)
T PRK01581        148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY  227 (374)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence            34678999999999999999998666678999999 888887773             279999999998732   223 


Q ss_pred             CEEEec
Q 024046          257 DAILMK  262 (273)
Q Consensus       257 D~~~l~  262 (273)
                      |+|++-
T Consensus       228 DVIIvD  233 (374)
T PRK01581        228 DVIIID  233 (374)
T ss_pred             cEEEEc
Confidence            999875

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=97.75  E-value=9.5e-05  Score=65.82  Aligned_cols=81  Identities=15%  Similarity=0.324  Sum_probs=59.1

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcccCC-CCCC
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFE-SVPE  255 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gD~f~-~~p~  255 (273)
                      ...+++..+ .....+|+|||||.|.++..++++..  +++++|+ +..++.+++       .++++++.+|+.+ +.+.
T Consensus        25 ~~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~  101 (294)
T PTZ00338         25 LDKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPY  101 (294)
T ss_pred             HHHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhCC--cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccc
Confidence            345666555 66678999999999999999999864  5899998 667765543       3689999999987 5555


Q ss_pred             CCEEEecccccccC
Q 024046          256 GDAILMKVGNFENY  269 (273)
Q Consensus       256 ~D~~~l~~vLHd~~  269 (273)
                      .|+++ .|.=++++
T Consensus       102 ~d~Vv-aNlPY~Is  114 (294)
T PTZ00338        102 FDVCV-ANVPYQIS  114 (294)
T ss_pred             cCEEE-ecCCcccC
Confidence            57554 44444433

>PRK04148 hypothetical protein; Provisional

Probab=97.72  E-value=0.00016  Score=56.63  Aligned_cols=72  Identities=19%  Similarity=0.328  Sum_probs=53.5

Q ss_pred             HHhhcccCCCcceEEEecCCccH-HHHHHHHHCCCCeEEEeec-hHHHHhCCCCCCceEEEcccCCCCC---CC-CEEEe
Q 024046          188 ILEHYEGFQNVERLVDVGGGFGV-TLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVP---EG-DAILM  261 (273)
Q Consensus       188 il~~~~~~~~~~~vvDVGGG~G~-~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gD~f~~~p---~~-D~~~l  261 (273)
                      +.+.++ -.+..+++|||+|.|. ++..|.+.  ...++++|. |..++.++. ..++++.+|+|+|-+   ++ |+++-
T Consensus         8 l~~~~~-~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~-~~~~~v~dDlf~p~~~~y~~a~liys   83 (134)
T PRK04148          8 IAENYE-KGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKK-LGLNAFVDDLFNPNLEIYKNAKLIYS   83 (134)
T ss_pred             HHHhcc-cccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHH-hCCeEEECcCCCCCHHHHhcCCEEEE
Confidence            444444 2345789999999996 77777765  467999998 887877764 457999999999644   34 88876


Q ss_pred             cc
Q 024046          262 KV  263 (273)
Q Consensus       262 ~~  263 (273)
                      .+
T Consensus        84 ir   85 (134)
T PRK04148         84 IR   85 (134)
T ss_pred             eC
Confidence            54

>PLN02672 methionine S-methyltransferase

Probab=97.69  E-value=8.1e-05  Score=76.26  Aligned_cols=64  Identities=22%  Similarity=0.252  Sum_probs=53.1

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC----------------------CCceEEEcccCCCCC
Q 024046          198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------------------AGVEHVGGNMFESVP  254 (273)
Q Consensus       198 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~----------------------~ri~~~~gD~f~~~p  254 (273)
                      ..+|+|||||+|..++.+++++|..+++++|+ |.+++.|+.+                      +||+++.+|++++.+
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            36899999999999999999999999999998 8888766321                      479999999998664


Q ss_pred             C----CCEEEe
Q 024046          255 E----GDAILM  261 (273)
Q Consensus       255 ~----~D~~~l  261 (273)
                      .    -|+|+.
T Consensus       199 ~~~~~fDlIVS  209 (1082)
T PLN02672        199 DNNIELDRIVG  209 (1082)
T ss_pred             ccCCceEEEEE
Confidence            2    287764

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=97.68  E-value=0.00011  Score=63.50  Aligned_cols=67  Identities=18%  Similarity=0.291  Sum_probs=51.8

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEE----EcccCCCC--CCC--CE
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHV----GGNMFESV--PEG--DA  258 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~----~gD~f~~~--p~~--D~  258 (273)
                      +.+...|+|+|||+|..+..++...|..+++.+|. +.++..|.++       +||.++    ..|.+.+-  +.+  |+
T Consensus       146 ~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dl  225 (328)
T KOG2904|consen  146 HSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDL  225 (328)
T ss_pred             hcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeE
Confidence            45567999999999999999999999999999998 6666655442       888887    56667654  345  66


Q ss_pred             EEe
Q 024046          259 ILM  261 (273)
Q Consensus       259 ~~l  261 (273)
                      ++.
T Consensus       226 lvs  228 (328)
T KOG2904|consen  226 LVS  228 (328)
T ss_pred             Eec
Confidence            543

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=97.66  E-value=9.5e-05  Score=60.34  Aligned_cols=65  Identities=20%  Similarity=0.271  Sum_probs=45.3

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC------C-CCceEEEcccCCC-C-CCC-CEEEe
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------Y-AGVEHVGGNMFES-V-PEG-DAILM  261 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~-~ri~~~~gD~f~~-~-p~~-D~~~l  261 (273)
                      ...+|||+|||+|+++..|++.-=.-+.+++|- +..++.|+.      . +.|+|++.|+++| + +.. |+|+=
T Consensus        67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlD  142 (227)
T KOG1271|consen   67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLD  142 (227)
T ss_pred             cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEee
Confidence            344999999999999999998743333577775 555554432      1 4599999999995 2 222 66653

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=97.66  E-value=6.8e-05  Score=62.78  Aligned_cols=53  Identities=21%  Similarity=0.370  Sum_probs=42.9

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC------CCCceEEEcccCC
Q 024046          199 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE  251 (273)
Q Consensus       199 ~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gD~f~  251 (273)
                      ..+||||||.|.++..+++++|+..++++|. ...+..+..      .+++.++.+|...
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~   78 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARE   78 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTT
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHH
Confidence            4999999999999999999999999999998 444444322      3899999999876

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=97.65  E-value=0.00014  Score=62.27  Aligned_cols=73  Identities=14%  Similarity=0.016  Sum_probs=54.9

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCC-C-CC-CC-CEEEecccc
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-S-VP-EG-DAILMKVGN  265 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~-~-~p-~~-D~~~l~~vL  265 (273)
                      .+..+|||||||+|.++..+++.  ..+++++|. +..++.++..     .+++++.+|+.. + .+ .. |+|++.+++
T Consensus        47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l  124 (233)
T PRK05134         47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML  124 (233)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence            35678999999999999999886  457899998 6666655431     357888888765 2 22 23 999999999


Q ss_pred             cccCC
Q 024046          266 FENYQ  270 (273)
Q Consensus       266 Hd~~~  270 (273)
                      +...+
T Consensus       125 ~~~~~  129 (233)
T PRK05134        125 EHVPD  129 (233)
T ss_pred             hccCC
Confidence            98765

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=97.65  E-value=0.00012  Score=65.06  Aligned_cols=66  Identities=17%  Similarity=0.193  Sum_probs=56.0

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCCC----CCceEEEcccCC
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE  251 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~~----~ri~~~~gD~f~  251 (273)
                      ..++++.+. ..+...+||.+||.|.++..+++.+| +.+++++|. |++++.+++.    +|++++.+||-+
T Consensus         8 l~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~   79 (296)
T PRK00050          8 LDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSN   79 (296)
T ss_pred             HHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHH
Confidence            456777775 55667999999999999999999997 789999998 8888887642    589999999986

>TIGR00438 rrmJ cell division protein FtsJ

Probab=97.64  E-value=0.00025  Score=58.84  Aligned_cols=72  Identities=13%  Similarity=0.275  Sum_probs=53.7

Q ss_pred             HHhhcccCCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeechHHHHhCCCCCCceEEEcccCCC---------CCC-C
Q 024046          188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFES---------VPE-G  256 (273)
Q Consensus       188 il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dlp~v~~~a~~~~ri~~~~gD~f~~---------~p~-~  256 (273)
                      +.+.+....+..+|||||||+|.++..+++++ +..+++++|+....    ..++++++.+|+.++         .+. +
T Consensus        23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~   98 (188)
T TIGR00438        23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDDK   98 (188)
T ss_pred             HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCCC
Confidence            33444445677899999999999999999987 66789999994322    246799999998762         343 3


Q ss_pred             -CEEEecc
Q 024046          257 -DAILMKV  263 (273)
Q Consensus       257 -D~~~l~~  263 (273)
                       |+++...
T Consensus        99 ~D~V~~~~  106 (188)
T TIGR00438        99 VDVVMSDA  106 (188)
T ss_pred             ccEEEcCC
Confidence             9999743

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=97.62  E-value=0.00017  Score=61.49  Aligned_cols=75  Identities=11%  Similarity=0.107  Sum_probs=57.7

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC------------------CCCceEEEcccCCCCCC
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------------------YAGVEHVGGNMFESVPE  255 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------------------~~ri~~~~gD~f~~~p~  255 (273)
                      .....+|||+|||.|..+.-|+++  ..+++++|+ |..++.+..                  ..+|++..+|+|+..+.
T Consensus        35 ~~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~  112 (218)
T PRK13255         35 LPAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA  112 (218)
T ss_pred             CCCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence            345579999999999999999985  678999998 776775411                  25799999999984332


Q ss_pred             ----CCEEEecccccccCCC
Q 024046          256 ----GDAILMKVGNFENYQS  271 (273)
Q Consensus       256 ----~D~~~l~~vLHd~~~~  271 (273)
                          .|+++-+-++|..+++
T Consensus       113 ~~~~fd~v~D~~~~~~l~~~  132 (218)
T PRK13255        113 DLADVDAVYDRAALIALPEE  132 (218)
T ss_pred             cCCCeeEEEehHhHhhCCHH
Confidence                2999988888776543

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=97.60  E-value=0.0001  Score=62.57  Aligned_cols=72  Identities=14%  Similarity=0.015  Sum_probs=55.6

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCC-C--CCCC-CEEEecccc
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S--VPEG-DAILMKVGN  265 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~--~p~~-D~~~l~~vL  265 (273)
                      ...+|||||||+|.++..+++..+  +++++|+ |.+++.++..      .+++++.+|+.+ +  .+.. |++++.+++
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l  122 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL  122 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence            467999999999999999988765  4899998 6676666542      258888888765 2  2233 999999999


Q ss_pred             cccCC
Q 024046          266 FENYQ  270 (273)
Q Consensus       266 Hd~~~  270 (273)
                      |...+
T Consensus       123 ~~~~~  127 (224)
T TIGR01983       123 EHVPD  127 (224)
T ss_pred             HhCCC
Confidence            98765

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.59  E-value=8.7e-05  Score=62.55  Aligned_cols=80  Identities=19%  Similarity=0.361  Sum_probs=50.7

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC---------------CCCceEEEcccC
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS---------------YAGVEHVGGNMF  250 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---------------~~ri~~~~gD~f  250 (273)
                      .+++.+. +.+...++|||+|.|....+.+-.++--+++++++ |.....|..               ..++++..|||.
T Consensus        33 ~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl  111 (205)
T PF08123_consen   33 KILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFL  111 (205)
T ss_dssp             HHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TT
T ss_pred             HHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcc
Confidence            4555555 66778999999999999999988887555999997 665544432               167899999999


Q ss_pred             C-C-----CCCCCEEEecccccc
Q 024046          251 E-S-----VPEGDAILMKVGNFE  267 (273)
Q Consensus       251 ~-~-----~p~~D~~~l~~vLHd  267 (273)
                      + +     +.++|++++.+.+.+
T Consensus       112 ~~~~~~~~~s~AdvVf~Nn~~F~  134 (205)
T PF08123_consen  112 DPDFVKDIWSDADVVFVNNTCFD  134 (205)
T ss_dssp             THHHHHHHGHC-SEEEE--TTT-
T ss_pred             ccHhHhhhhcCCCEEEEeccccC
Confidence            7 2     245799999988643

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PRK03612 spermidine synthase; Provisional

Probab=97.59  E-value=0.00013  Score=70.06  Aligned_cols=66  Identities=27%  Similarity=0.456  Sum_probs=54.5

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhCCC-------------CCCceEEEcccCCC---CCCC-
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPS-------------YAGVEHVGGNMFES---VPEG-  256 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~-------------~~ri~~~~gD~f~~---~p~~-  256 (273)
                      +++++|+|||||+|..+..+++ +|. .+++++|+ |+|++.+++             ++|++++.+|.++-   .++. 
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f  374 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF  374 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence            4678999999999999999997 566 78999999 999998765             16899999998872   3344 


Q ss_pred             CEEEec
Q 024046          257 DAILMK  262 (273)
Q Consensus       257 D~~~l~  262 (273)
                      |+|++.
T Consensus       375 DvIi~D  380 (521)
T PRK03612        375 DVIIVD  380 (521)
T ss_pred             CEEEEe
Confidence            999875

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=97.52  E-value=0.00018  Score=60.33  Aligned_cols=64  Identities=17%  Similarity=0.160  Sum_probs=48.9

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCCCC--C--CCEEEe
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP--E--GDAILM  261 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~p--~--~D~~~l  261 (273)
                      ...++||+|||+|.++..++.+.. .+++.+|. |.+++.++.+      ++++++.+|+++.++  .  .|+|++
T Consensus        53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~  127 (199)
T PRK10909         53 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFV  127 (199)
T ss_pred             CCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEE
Confidence            446999999999999998766664 58999998 7777766542      579999999987332  2  388875

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=97.52  E-value=9.4e-05  Score=62.12  Aligned_cols=75  Identities=20%  Similarity=0.340  Sum_probs=53.0

Q ss_pred             HHHhhcccCCC--cceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCCCCc--eEEEcccCC--CCCCC--C
Q 024046          187 RILEHYEGFQN--VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGV--EHVGGNMFE--SVPEG--D  257 (273)
Q Consensus       187 ~il~~~~~~~~--~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri--~~~~gD~f~--~~p~~--D  257 (273)
                      .-++.++ +++  ...|||||||+|..+..|...  ....+++|+ |++++.|.+ ..+  .++-+||=+  |++.|  |
T Consensus        39 RaLELLa-lp~~~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~-~e~egdlil~DMG~GlpfrpGtFD  114 (270)
T KOG1541|consen   39 RALELLA-LPGPKSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVE-RELEGDLILCDMGEGLPFRPGTFD  114 (270)
T ss_pred             HHHHHhh-CCCCCCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHH-hhhhcCeeeeecCCCCCCCCCccc
Confidence            3344444 554  789999999999988877665  466899998 999998875 223  467778877  44455  7


Q ss_pred             EEEecccc
Q 024046          258 AILMKVGN  265 (273)
Q Consensus       258 ~~~l~~vL  265 (273)
                      .++....+
T Consensus       115 g~ISISAv  122 (270)
T KOG1541|consen  115 GVISISAV  122 (270)
T ss_pred             eEEEeeee
Confidence            66554433

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.51  E-value=0.00026  Score=58.18  Aligned_cols=64  Identities=19%  Similarity=0.272  Sum_probs=49.9

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCCCCCCCCEEEe
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPEGDAILM  261 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~~~p~~D~~~l  261 (273)
                      ..++|+|+|||+|.+++..+-.-|. +++.+|+ |+.++.++.+     .+|.|+..|.-.--+.-|.+++
T Consensus        45 ~g~~V~DlG~GTG~La~ga~~lGa~-~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvim  114 (198)
T COG2263          45 EGKTVLDLGAGTGILAIGAALLGAS-RVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIM  114 (198)
T ss_pred             CCCEEEEcCCCcCHHHHHHHhcCCc-EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEE
Confidence            4578999999999999999888876 6899998 8888887764     6799999998652222344443

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=97.50  E-value=0.00024  Score=66.96  Aligned_cols=73  Identities=22%  Similarity=0.212  Sum_probs=55.1

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCC-----C
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES-----V  253 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~-----~  253 (273)
                      ..+++.++ ..+..+|||+|||+|.++..+++..  .+++++|. +++++.|+.+      ++++++.+|+.+.     +
T Consensus       287 ~~vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~  363 (443)
T PRK13168        287 ARALEWLD-PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPW  363 (443)
T ss_pred             HHHHHHhc-CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhh
Confidence            34444444 4456799999999999999999986  47899998 8888877642      5799999999753     2


Q ss_pred             CC--CCEEEe
Q 024046          254 PE--GDAILM  261 (273)
Q Consensus       254 p~--~D~~~l  261 (273)
                      +.  .|++++
T Consensus       364 ~~~~fD~Vi~  373 (443)
T PRK13168        364 ALGGFDKVLL  373 (443)
T ss_pred             hcCCCCEEEE
Confidence            22  288876

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=97.48  E-value=0.00026  Score=59.88  Aligned_cols=81  Identities=25%  Similarity=0.390  Sum_probs=59.5

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhCCCC------CCceEEEcccCCCCCC-C
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE-G  256 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~p~-~  256 (273)
                      ..+++.++ +++..+|||||+|+|.++..+++..-. -+++.+|. |.+++.|+..      ++|+++.||....+|. +
T Consensus        62 a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~a  140 (209)
T PF01135_consen   62 ARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEA  140 (209)
T ss_dssp             HHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-
T ss_pred             HHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCC
Confidence            34566666 788899999999999999999988543 35788887 8888877653      6899999999887664 3


Q ss_pred             --CEEEecccccc
Q 024046          257 --DAILMKVGNFE  267 (273)
Q Consensus       257 --D~~~l~~vLHd  267 (273)
                        |.|++.-....
T Consensus       141 pfD~I~v~~a~~~  153 (209)
T PF01135_consen  141 PFDRIIVTAAVPE  153 (209)
T ss_dssp             SEEEEEESSBBSS
T ss_pred             CcCEEEEeeccch
Confidence              99988765543

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=97.46  E-value=0.00023  Score=62.87  Aligned_cols=67  Identities=27%  Similarity=0.356  Sum_probs=57.2

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcccCC---CCCC-CCEE
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFE---SVPE-GDAI  259 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------~~ri~~~~gD~f~---~~p~-~D~~  259 (273)
                      .+.+++||=||||.|..+.++++..|--+.+++|+ |+|++.+++          ++|++++.+|-++   ..+. .|+|
T Consensus        74 h~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvI  153 (282)
T COG0421          74 HPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVI  153 (282)
T ss_pred             CCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEE
Confidence            34567999999999999999999999999999999 999998865          2899999999987   3444 3988


Q ss_pred             Ee
Q 024046          260 LM  261 (273)
Q Consensus       260 ~l  261 (273)
                      ++
T Consensus       154 i~  155 (282)
T COG0421         154 IV  155 (282)
T ss_pred             EE
Confidence            75

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=97.45  E-value=0.00024  Score=63.04  Aligned_cols=66  Identities=20%  Similarity=0.248  Sum_probs=47.7

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCCCC-CEEEecc
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEG-DAILMKV  263 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p~~-D~~~l~~  263 (273)
                      ...+|+|||||+|.++..+++. +..+++++|+ |.+++.|+.+       +++.+..+|.....+.. |++++.-
T Consensus       159 ~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~  233 (288)
T TIGR00406       159 KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANI  233 (288)
T ss_pred             CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEec
Confidence            4589999999999999888765 4458999998 7777776542       46777777643323333 9998743

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases

Probab=97.44  E-value=0.00038  Score=47.99  Aligned_cols=60  Identities=18%  Similarity=0.273  Sum_probs=50.2

Q ss_pred             HHHHhChhHHHHhCCC--CCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecCh
Q 024046           43 AAIQLGVFEIIAKAGE--LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP  107 (273)
Q Consensus        43 ~a~elglfd~L~~~g~--~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~  107 (273)
                      ...+-.|+..|.+.|+  .|+.|||+.+|+    +...++|+|.-|...|+++... ..++.|.++.
T Consensus         5 ~~~~~~IL~~L~~~g~~~~ta~eLa~~lgl----~~~~v~r~L~~L~~~G~V~~~~-~~~~~W~i~~   66 (68)
T smart00550        5 DSLEEKILEFLENSGDETSTALQLAKNLGL----PKKEVNRVLYSLEKKGKVCKQG-GTPPLWKLTD   66 (68)
T ss_pred             hHHHHHHHHHHHHCCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecC-CCCCceEeec
Confidence            3456678999999876  999999999999    9999999999999999999742 1337787764

Helix-turn-helix-containing domain. Also known as Zab.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=97.41  E-value=0.00032  Score=63.10  Aligned_cols=64  Identities=13%  Similarity=0.089  Sum_probs=50.0

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCC---CCC-CCEEEec
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES---VPE-GDAILMK  262 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~---~p~-~D~~~l~  262 (273)
                      ...+|||+|||+|.++..+++.  ..+++++|. |.+++.|+++      ++++++.+|+.+-   ... .|++++.
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d  247 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN  247 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence            3479999999999999999985  467999998 8888777542      5799999999762   222 3888754

>TIGR00417 speE spermidine synthase

Probab=97.40  E-value=0.0003  Score=61.91  Aligned_cols=69  Identities=20%  Similarity=0.259  Sum_probs=54.2

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcccCC--C-CCCC-CEEE
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFE--S-VPEG-DAIL  260 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------~~ri~~~~gD~f~--~-~p~~-D~~~  260 (273)
                      +++.+||+||||.|..+..+++..|..+.+++|+ |.+++.+++          .+|++++.+|.++  . .++. |+|+
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi  150 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII  150 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence            4567999999999999999998876778999998 777776654          2689999999876  2 2333 9998


Q ss_pred             eccc
Q 024046          261 MKVG  264 (273)
Q Consensus       261 l~~v  264 (273)
                      +...
T Consensus       151 ~D~~  154 (270)
T TIGR00417       151 VDST  154 (270)
T ss_pred             EeCC
Confidence            7543

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=97.39  E-value=0.00029  Score=62.42  Aligned_cols=63  Identities=21%  Similarity=0.347  Sum_probs=44.8

Q ss_pred             HHHHHHhcchhhHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC
Q 024046          173 YHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY  239 (273)
Q Consensus       173 f~~am~~~~~~~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~  239 (273)
                      |-...+..++... .+++.+.  .+..+++|||||+|.++++.++--.. +++++|+ |..++.|+++
T Consensus       141 FGTG~HpTT~lcL-~~Le~~~--~~g~~vlDvGcGSGILaIAa~kLGA~-~v~g~DiDp~AV~aa~eN  204 (300)
T COG2264         141 FGTGTHPTTSLCL-EALEKLL--KKGKTVLDVGCGSGILAIAAAKLGAK-KVVGVDIDPQAVEAAREN  204 (300)
T ss_pred             cCCCCChhHHHHH-HHHHHhh--cCCCEEEEecCChhHHHHHHHHcCCc-eEEEecCCHHHHHHHHHH
Confidence            4433344444433 2345544  47899999999999999999888653 6899999 7778877754

>PLN02823 spermine synthase

Probab=97.36  E-value=0.00031  Score=63.63  Aligned_cols=67  Identities=22%  Similarity=0.213  Sum_probs=55.6

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcccCCCC---CCC-CEEE
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFESV---PEG-DAIL  260 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------~~ri~~~~gD~f~~~---p~~-D~~~  260 (273)
                      +++++||-||||.|..+..+++..+..+++++|+ |.|++.+++          .+|++++.+|.+.-+   ++. |+|+
T Consensus       102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi  181 (336)
T PLN02823        102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII  181 (336)
T ss_pred             CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence            4678999999999999999999777778999999 889888764          279999999998732   233 9988


Q ss_pred             ec
Q 024046          261 MK  262 (273)
Q Consensus       261 l~  262 (273)
                      +-
T Consensus       182 ~D  183 (336)
T PLN02823        182 GD  183 (336)
T ss_pred             ec
Confidence            75

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=97.34  E-value=0.0004  Score=62.43  Aligned_cols=66  Identities=20%  Similarity=0.292  Sum_probs=50.5

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC--------CCceEEE----cccCCCC--CCC--CEE
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVG----GNMFESV--PEG--DAI  259 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~--------~ri~~~~----gD~f~~~--p~~--D~~  259 (273)
                      ...++||||||+|.....++.+.|+.++++.|+ |..++.|+.+        +||++..    .++|..+  +..  |++
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli  193 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT  193 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence            457999999999999988999999999999998 7777777542        4787753    4556543  332  888


Q ss_pred             Eec
Q 024046          260 LMK  262 (273)
Q Consensus       260 ~l~  262 (273)
                      ++.
T Consensus       194 vcN  196 (321)
T PRK11727        194 LCN  196 (321)
T ss_pred             EeC
Confidence            765

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=0.001  Score=55.90  Aligned_cols=74  Identities=20%  Similarity=0.373  Sum_probs=60.2

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCCCCC-C--
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE-G--  256 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~p~-~--  256 (273)
                      .++..+. +++..+||+||||+|..+..+++.--  +++.+|+ ++..+.|+.+      .+|.++.||-..-+|+ +  
T Consensus        63 ~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPy  139 (209)
T COG2518          63 RMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPY  139 (209)
T ss_pred             HHHHHhC-CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCc
Confidence            4566666 88889999999999999998888866  6888887 7777777652      6799999999998775 4  


Q ss_pred             CEEEecc
Q 024046          257 DAILMKV  263 (273)
Q Consensus       257 D~~~l~~  263 (273)
                      |.|+..-
T Consensus       140 D~I~Vta  146 (209)
T COG2518         140 DRIIVTA  146 (209)
T ss_pred             CEEEEee
Confidence            9888654

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=97.33  E-value=0.00045  Score=58.91  Aligned_cols=53  Identities=19%  Similarity=0.332  Sum_probs=44.1

Q ss_pred             HHHHhhcc-cCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC
Q 024046          186 ERILEHYE-GFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS  238 (273)
Q Consensus       186 ~~il~~~~-~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~  238 (273)
                      +..++.++ .|-....+|||||++|.++..+++.|-....+++|+ |..|+.|+.
T Consensus        46 D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark  100 (288)
T KOG2899|consen   46 DPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARK  100 (288)
T ss_pred             ChhhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHH
Confidence            34455553 366789999999999999999999999999999999 777888865

>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation

Probab=97.30  E-value=0.00052  Score=49.72  Aligned_cols=58  Identities=28%  Similarity=0.390  Sum_probs=49.3

Q ss_pred             HhChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhc
Q 024046           46 QLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS  109 (273)
Q Consensus        46 elglfd~L~~~-g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s  109 (273)
                      -+.|++.|... ++.|+.|||+.+|+    +...+.|+|..|...|++...  ...+.|.+++..
T Consensus         7 ~~~Il~~l~~~~~~~t~~~ia~~l~i----~~~tv~r~l~~L~~~g~l~~~--~~~~~y~l~~~~   65 (91)
T smart00346        7 GLAVLRALAEEPGGLTLAELAERLGL----SKSTAHRLLNTLQELGYVEQD--GQNGRYRLGPKV   65 (91)
T ss_pred             HHHHHHHHHhCCCCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCeeec--CCCCceeecHHH
Confidence            35678888876 68999999999999    999999999999999999974  235678888754

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=97.30  E-value=0.0006  Score=58.73  Aligned_cols=68  Identities=12%  Similarity=0.234  Sum_probs=54.0

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCC-------C-C-C
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESV-------P-E-G  256 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~-------p-~-~  256 (273)
                      ..++++|||||+|+|..+..+++..| +.+++.+|. |+.++.|+++       ++|+++.||..+-+       + + -
T Consensus        66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f  145 (234)
T PLN02781         66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF  145 (234)
T ss_pred             HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence            45789999999999999999998865 678999998 7777776542       78999999998621       1 2 3


Q ss_pred             CEEEec
Q 024046          257 DAILMK  262 (273)
Q Consensus       257 D~~~l~  262 (273)
                      |++++-
T Consensus       146 D~VfiD  151 (234)
T PLN02781        146 DFAFVD  151 (234)
T ss_pred             CEEEEC
Confidence            888764

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=97.27  E-value=0.00084  Score=58.18  Aligned_cols=73  Identities=18%  Similarity=0.387  Sum_probs=57.8

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC-CCCC
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPE  255 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~p~  255 (273)
                      +..|+..-+ ......||+||.|+|.+...++++-  .+++.+++ |.+++.....       .+.+++.||+++ ++|-
T Consensus        47 ~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~~--kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P~  123 (315)
T KOG0820|consen   47 IDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEAG--KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPR  123 (315)
T ss_pred             HHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHhc--CeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCcc
Confidence            456666666 7788999999999999999999994  45788887 7776655432       679999999998 7887


Q ss_pred             CCEEE
Q 024046          256 GDAIL  260 (273)
Q Consensus       256 ~D~~~  260 (273)
                      .|.++
T Consensus       124 fd~cV  128 (315)
T KOG0820|consen  124 FDGCV  128 (315)
T ss_pred             cceee
Confidence            66554

>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional

Probab=97.26  E-value=0.00049  Score=52.64  Aligned_cols=69  Identities=23%  Similarity=0.301  Sum_probs=56.6

Q ss_pred             hHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChh
Q 024046           36 VLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV  108 (273)
Q Consensus        36 ~~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~  108 (273)
                      -.+.+|.-..++.|+..|...|+.++.||++.+++    ++..+.+.|+.|...|+++....+..-.|++++.
T Consensus         8 ~~fkaLadptRl~IL~~L~~~~~~~v~ela~~l~l----sqstvS~HL~~L~~AGLV~~~r~Gr~~~Y~l~~~   76 (117)
T PRK10141          8 QLFKILSDETRLGIVLLLRESGELCVCDLCTALDQ----SQPKISRHLALLRESGLLLDRKQGKWVHYRLSPH   76 (117)
T ss_pred             HHHHHhCCHHHHHHHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEEEcCEEEEEECch
Confidence            45678888899999999987579999999999999    9999999999999999998642112224777653

>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B

Probab=97.25  E-value=0.00038  Score=46.78  Aligned_cols=54  Identities=19%  Similarity=0.301  Sum_probs=47.2

Q ss_pred             HHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        38 ~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      +.+|..-.++.|+..|...+|.|+.+||+.+|+    ++..+.+.|+.|...|+++..
T Consensus         4 ~~aL~~p~R~~Il~~L~~~~~~t~~ela~~l~~----~~~t~s~hL~~L~~aGli~~~   57 (61)
T PF12840_consen    4 FKALSDPTRLRILRLLASNGPMTVSELAEELGI----SQSTVSYHLKKLEEAGLIEVE   57 (61)
T ss_dssp             HHHHTSHHHHHHHHHHHHCSTBEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHhCCHHHHHHHHHHhcCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence            456677789999999955579999999999999    999999999999999999863

...

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=97.25  E-value=0.00065  Score=64.02  Aligned_cols=71  Identities=17%  Similarity=0.149  Sum_probs=55.2

Q ss_pred             hhcccCCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCC---CCC-CC
Q 024046          190 EHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES---VPE-GD  257 (273)
Q Consensus       190 ~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~---~p~-~D  257 (273)
                      ..++ ..+..+|+|+|||+|..+..+++.. |+.+++.+|+ +..++.++++      +.|+++.+|+.+.   ++. .|
T Consensus       244 ~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD  322 (444)
T PRK14902        244 PALD-PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFD  322 (444)
T ss_pred             HHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCC
Confidence            3444 5566899999999999999999986 6788999999 7777666432      4599999999762   343 39


Q ss_pred             EEEe
Q 024046          258 AILM  261 (273)
Q Consensus       258 ~~~l  261 (273)
                      +|++
T Consensus       323 ~Vl~  326 (444)
T PRK14902        323 KILV  326 (444)
T ss_pred             EEEE
Confidence            9886

>TIGR00478 tly hemolysin TlyA family protein

Probab=97.24  E-value=0.0016  Score=55.85  Aligned_cols=79  Identities=14%  Similarity=0.109  Sum_probs=50.8

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-h-HHHHhCCCCCCceEEE-cccCC--------CC
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-P-HVVQDAPSYAGVEHVG-GNMFE--------SV  253 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p-~v~~~a~~~~ri~~~~-gD~f~--------~~  253 (273)
                      ...+++.++......+++|||||+|.++..++++ +--+++++|. + .+....+.++|+.... -|+..        ++
T Consensus        63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~  141 (228)
T TIGR00478        63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDF  141 (228)
T ss_pred             HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCc
Confidence            3455565541225679999999999999999987 4457999998 4 3444555566654222 23331        22


Q ss_pred             CCCCEEEeccc
Q 024046          254 PEGDAILMKVG  264 (273)
Q Consensus       254 p~~D~~~l~~v  264 (273)
                      +..|+.+++..
T Consensus       142 ~~~DvsfiS~~  152 (228)
T TIGR00478       142 ATFDVSFISLI  152 (228)
T ss_pred             eeeeEEEeehH
Confidence            23488887654

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=97.24  E-value=0.0004  Score=61.75  Aligned_cols=82  Identities=26%  Similarity=0.400  Sum_probs=52.0

Q ss_pred             HHHHHHhcchhhHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceE
Q 024046          173 YHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEH  244 (273)
Q Consensus       173 f~~am~~~~~~~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~  244 (273)
                      |-..-+..++..... +..+.  .+..+|+|||||+|.++++.++.-.. +++.+|. |..++.|+.+       +++.+
T Consensus       140 FGTG~H~TT~lcl~~-l~~~~--~~g~~vLDvG~GSGILaiaA~klGA~-~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v  215 (295)
T PF06325_consen  140 FGTGHHPTTRLCLEL-LEKYV--KPGKRVLDVGCGSGILAIAAAKLGAK-KVVAIDIDPLAVEAARENAELNGVEDRIEV  215 (295)
T ss_dssp             S-SSHCHHHHHHHHH-HHHHS--STTSEEEEES-TTSHHHHHHHHTTBS-EEEEEESSCHHHHHHHHHHHHTT-TTCEEE
T ss_pred             ccCCCCHHHHHHHHH-HHHhc--cCCCEEEEeCCcHHHHHHHHHHcCCC-eEEEecCCHHHHHHHHHHHHHcCCCeeEEE
Confidence            444444455554433 34443  35579999999999999999998553 7899999 7777777653       45544


Q ss_pred             EEcccCCCCCCC--CEEEe
Q 024046          245 VGGNMFESVPEG--DAILM  261 (273)
Q Consensus       245 ~~gD~f~~~p~~--D~~~l  261 (273)
                      .   ...+.+.+  |+|+.
T Consensus       216 ~---~~~~~~~~~~dlvvA  231 (295)
T PF06325_consen  216 S---LSEDLVEGKFDLVVA  231 (295)
T ss_dssp             S---CTSCTCCS-EEEEEE
T ss_pred             E---EecccccccCCEEEE
Confidence            2   22344433  88763

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=97.23  E-value=0.00038  Score=59.54  Aligned_cols=53  Identities=19%  Similarity=0.307  Sum_probs=42.9

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC------CCCceEEEcccCC
Q 024046          199 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE  251 (273)
Q Consensus       199 ~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gD~f~  251 (273)
                      ..+||||||.|.++..+++++|+..++++|. ..++..+..      .++|.++.+|.-.
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~  109 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVE  109 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHH
Confidence            5899999999999999999999999999998 333333321      2588999888765

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=97.23  E-value=0.001  Score=60.25  Aligned_cols=72  Identities=18%  Similarity=0.134  Sum_probs=53.7

Q ss_pred             HHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCC-CCCC-C-C
Q 024046          188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPE-G-D  257 (273)
Q Consensus       188 il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~~p~-~-D  257 (273)
                      ++.... +++..+|+|+|||+|.++.+.+..  ..++++.|. +.++..++.+      +.+.++.+|+.+ +.+. . |
T Consensus       174 ~~~l~~-~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D  250 (329)
T TIGR01177       174 MVNLAR-VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVD  250 (329)
T ss_pred             HHHHhC-CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCC
Confidence            333334 667789999999999999887654  567899998 7777765532      448899999987 5543 3 9


Q ss_pred             EEEec
Q 024046          258 AILMK  262 (273)
Q Consensus       258 ~~~l~  262 (273)
                      ++++.
T Consensus       251 ~Iv~d  255 (329)
T TIGR01177       251 AIATD  255 (329)
T ss_pred             EEEEC
Confidence            98873

This family is found exclusively in the Archaea.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=97.20  E-value=0.00046  Score=60.00  Aligned_cols=42  Identities=24%  Similarity=0.346  Sum_probs=34.3

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS  238 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~  238 (273)
                      ....+|+|||||+|.+++.+++..+. +++++|. |..++.|++
T Consensus       118 ~~~~~VLDiGcGsG~l~i~~~~~g~~-~v~giDis~~~l~~A~~  160 (250)
T PRK00517        118 LPGKTVLDVGCGSGILAIAAAKLGAK-KVLAVDIDPQAVEAARE  160 (250)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHcCCC-eEEEEECCHHHHHHHHH
Confidence            46689999999999999987776554 6899998 778877764

>PTZ00146 fibrillarin; Provisional

Probab=97.16  E-value=0.0017  Score=57.49  Aligned_cols=70  Identities=11%  Similarity=0.099  Sum_probs=54.1

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hH----HHHhCCCCCCceEEEcccCCCC----C-C-CCEEEec
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PH----VVQDAPSYAGVEHVGGNMFESV----P-E-GDAILMK  262 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~----v~~~a~~~~ri~~~~gD~f~~~----p-~-~D~~~l~  262 (273)
                      +.+..+|||+|||+|.++..+++... +=+++.+|. |.    +++.+...++|.++.+|...+.    + + .|+|++.
T Consensus       130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D  209 (293)
T PTZ00146        130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD  209 (293)
T ss_pred             cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence            55678999999999999999999874 457899997 43    5566665688999999987642    2 2 3999876


Q ss_pred             cc
Q 024046          263 VG  264 (273)
Q Consensus       263 ~v  264 (273)
                      ..
T Consensus       210 va  211 (293)
T PTZ00146        210 VA  211 (293)
T ss_pred             CC
Confidence            54

>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities

Probab=97.15  E-value=0.00027  Score=45.91  Aligned_cols=44  Identities=32%  Similarity=0.462  Sum_probs=38.9

Q ss_pred             hChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           47 LGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        47 lglfd~L~~~g-~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      +.|+++|.+.+ +.|+.|||+.+|+    +..-+.|+|..|+..|++++
T Consensus         6 l~iL~~l~~~~~~~t~~eia~~~gl----~~stv~r~L~tL~~~g~v~~   50 (52)
T PF09339_consen    6 LRILEALAESGGPLTLSEIARALGL----PKSTVHRLLQTLVEEGYVER   50 (52)
T ss_dssp             HHHHHCHHCTBSCEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHHcCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCcCeec
Confidence            45788888865 6899999999999    99999999999999999986

One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=97.11  E-value=0.0014  Score=61.46  Aligned_cols=72  Identities=21%  Similarity=0.208  Sum_probs=55.7

Q ss_pred             HhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCCC---CC-C-CC
Q 024046          189 LEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFES---VP-E-GD  257 (273)
Q Consensus       189 l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~~---~p-~-~D  257 (273)
                      +..++ ..+..+|||+|||+|..+..+++..++.+++.+|. |..++.++.+     -+++++.+|..+.   .+ . .|
T Consensus       237 ~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD  315 (427)
T PRK10901        237 ATLLA-PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFD  315 (427)
T ss_pred             HHHcC-CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCC
Confidence            33444 45678999999999999999999998888999998 7777776542     2478999999863   22 2 39


Q ss_pred             EEEe
Q 024046          258 AILM  261 (273)
Q Consensus       258 ~~~l  261 (273)
                      .|++
T Consensus       316 ~Vl~  319 (427)
T PRK10901        316 RILL  319 (427)
T ss_pred             EEEE
Confidence            8884

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.11  E-value=0.0013  Score=57.63  Aligned_cols=68  Identities=12%  Similarity=0.390  Sum_probs=53.5

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----CCCceEEEcccCC-CCCC
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE-SVPE  255 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~ri~~~~gD~f~-~~p~  255 (273)
                      ++.+++..+ ..+...|+|||.|.|.++..|++..  -+.+++|. |..++..++    .++++++.+|+++ +.+.
T Consensus        19 ~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~   92 (262)
T PF00398_consen   19 ADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYD   92 (262)
T ss_dssp             HHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGG
T ss_pred             HHHHHHhcC-CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHH
Confidence            456777776 7788999999999999999999998  56888887 555554433    5899999999998 4444

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities

Probab=97.08  E-value=0.0006  Score=43.31  Aligned_cols=44  Identities=20%  Similarity=0.419  Sum_probs=39.9

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCcee
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLE   93 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~   93 (273)
                      .++.|...|.+ ||.++.||++.+|+    +...+.+.|+.|...|+++
T Consensus         3 ~R~~Il~~L~~-~~~~~~el~~~l~~----s~~~vs~hL~~L~~~glV~   46 (47)
T PF01022_consen    3 TRLRILKLLSE-GPLTVSELAEELGL----SQSTVSHHLKKLREAGLVE   46 (47)
T ss_dssp             HHHHHHHHHTT-SSEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEE
T ss_pred             HHHHHHHHHHh-CCCchhhHHHhccc----cchHHHHHHHHHHHCcCee
Confidence            46778889988 89999999999999    9999999999999999986

One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=97.07  E-value=0.0023  Score=54.70  Aligned_cols=74  Identities=14%  Similarity=0.074  Sum_probs=57.5

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC------------------CCCceEEEcccCCC-C-C
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------------------YAGVEHVGGNMFES-V-P  254 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------------------~~ri~~~~gD~f~~-~-p  254 (273)
                      .+..+|++.|||.|.-+.-|++.  ..+++++|+ |..++.+.+                  ..+|+++.||||+- . +
T Consensus        42 ~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~  119 (226)
T PRK13256         42 NDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA  119 (226)
T ss_pred             CCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence            34579999999999999999987  667999999 666766411                  15899999999982 2 1


Q ss_pred             --CC--CEEEecccccccCCC
Q 024046          255 --EG--DAILMKVGNFENYQS  271 (273)
Q Consensus       255 --~~--D~~~l~~vLHd~~~~  271 (273)
                        .+  |+|+=+.+|+-.+++
T Consensus       120 ~~~~~fD~VyDra~~~Alpp~  140 (226)
T PRK13256        120 NNLPVFDIWYDRGAYIALPND  140 (226)
T ss_pred             cccCCcCeeeeehhHhcCCHH
Confidence              12  999988888877653

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=97.02  E-value=0.00038  Score=56.38  Aligned_cols=62  Identities=16%  Similarity=0.369  Sum_probs=46.1

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCC---CC--C-CCEEEec
Q 024046          199 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---VP--E-GDAILMK  262 (273)
Q Consensus       199 ~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~---~p--~-~D~~~l~  262 (273)
                      .+|+|+-||.|.-++++++.++.  ++.+|+ |.-++.++.+       +||+++.||+++-   +.  . .|+|+++
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~~~--Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS   76 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTFDR--VIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS   76 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT-E--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred             CEEEEeccCcCHHHHHHHHhCCe--EEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence            47999999999999999999875  789998 7777766542       7999999999983   22  2 3888875

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis

Probab=96.99  E-value=0.00055  Score=47.04  Aligned_cols=56  Identities=23%  Similarity=0.291  Sum_probs=45.2

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceec
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYAL  105 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~l  105 (273)
                      .|..++..|...|+.|++|||+.+|+    +...+.+.|+-|...|+++...+ .+..|+.
T Consensus         9 ~E~~vy~~Ll~~~~~t~~eIa~~l~i----~~~~v~~~L~~L~~~GlV~~~~~-~~~~Y~a   64 (68)
T PF01978_consen    9 NEAKVYLALLKNGPATAEEIAEELGI----SRSTVYRALKSLEEKGLVEREEG-RPKVYRA   64 (68)
T ss_dssp             HHHHHHHHHHHHCHEEHHHHHHHHTS----SHHHHHHHHHHHHHTTSEEEEEE-CCEEEEE
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEcC-ceEEEEE
Confidence            45567777766689999999999999    99999999999999999998532 3334543

TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.99  E-value=0.0036  Score=55.39  Aligned_cols=83  Identities=16%  Similarity=0.232  Sum_probs=54.1

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hH------HHHhCCCC-CCceEEEcccCCCCC--C
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PH------VVQDAPSY-AGVEHVGGNMFESVP--E  255 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~------v~~~a~~~-~ri~~~~gD~f~~~p--~  255 (273)
                      +.+...++.+ ..++|+|||||+|.++-..+++-|. .++++|- +.      .++..... .++.+++ ...+.+|  .
T Consensus       105 ~rl~p~l~~L-~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lp-lgvE~Lp~~~  181 (315)
T PF08003_consen  105 DRLLPHLPDL-KGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELP-LGVEDLPNLG  181 (315)
T ss_pred             HHHHhhhCCc-CCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcC-cchhhccccC
Confidence            4455555425 4589999999999999999999886 4788985 22      22222211 3334443 2333444  3


Q ss_pred             C-CEEEecccccccCCC
Q 024046          256 G-DAILMKVGNFENYQS  271 (273)
Q Consensus       256 ~-D~~~l~~vLHd~~~~  271 (273)
                      . |+|++.-||++-.++
T Consensus       182 ~FDtVF~MGVLYHrr~P  198 (315)
T PF08003_consen  182 AFDTVFSMGVLYHRRSP  198 (315)
T ss_pred             CcCEEEEeeehhccCCH
Confidence            3 999999999986653

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=96.96  E-value=0.0026  Score=56.71  Aligned_cols=72  Identities=25%  Similarity=0.355  Sum_probs=54.1

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCC-------CCCceEEEcccCC-CCCCC-C
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVGGNMFE-SVPEG-D  257 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~-------~~ri~~~~gD~f~-~~p~~-D  257 (273)
                      .++.....|+ .+.|||||||+|.++.-.+.+-. -++..++-.++.+.|+.       .+||++++|-+-+ ++|+. |
T Consensus       168 Ail~N~sDF~-~kiVlDVGaGSGILS~FAaqAGA-~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~D  245 (517)
T KOG1500|consen  168 AILENHSDFQ-DKIVLDVGAGSGILSFFAAQAGA-KKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVD  245 (517)
T ss_pred             HHHhcccccC-CcEEEEecCCccHHHHHHHHhCc-ceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhcc
Confidence            4555443353 48899999999998886666643 35788888777777664       2899999999988 89975 9


Q ss_pred             EEE
Q 024046          258 AIL  260 (273)
Q Consensus       258 ~~~  260 (273)
                      +++
T Consensus       246 viI  248 (517)
T KOG1500|consen  246 VII  248 (517)
T ss_pred             EEE
Confidence            876

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=96.95  E-value=0.001  Score=56.71  Aligned_cols=72  Identities=19%  Similarity=0.159  Sum_probs=52.9

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCCCCceEE-------EcccCCCC--CCC-CEEEeccccc
Q 024046          198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHV-------GGNMFESV--PEG-DAILMKVGNF  266 (273)
Q Consensus       198 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~-------~gD~f~~~--p~~-D~~~l~~vLH  266 (273)
                      .+.++|||||+|..++.++..|.+  +|+.|. +.+++.|.++++++..       .-++..=.  ++. |+|+....+|
T Consensus        34 h~~a~DvG~G~Gqa~~~iae~~k~--VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~H  111 (261)
T KOG3010|consen   34 HRLAWDVGTGNGQAARGIAEHYKE--VIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVH  111 (261)
T ss_pred             cceEEEeccCCCcchHHHHHhhhh--heeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHH
Confidence            349999999999888888888776  699998 8899999887544322       22222211  334 9999999999


Q ss_pred             ccCCC
Q 024046          267 ENYQS  271 (273)
Q Consensus       267 d~~~~  271 (273)
                      -+..|
T Consensus       112 WFdle  116 (261)
T KOG3010|consen  112 WFDLE  116 (261)
T ss_pred             hhchH
Confidence            87654

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.91  E-value=0.0011  Score=52.16  Aligned_cols=71  Identities=20%  Similarity=0.413  Sum_probs=51.7

Q ss_pred             HHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCe-EEEeec-hHHHHhCCCC-----CCceEEEcccCCCCCCC---C
Q 024046          188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIK-AVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPEG---D  257 (273)
Q Consensus       188 il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~-~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~~~p~~---D  257 (273)
                      |-..|+.+ ....+.|+|||.|.+.  ++-.+|..+ ++++|+ |+.++.++.+     =.|.++..|+.++.+.+   |
T Consensus        40 Ih~Tygdi-Egkkl~DLgcgcGmLs--~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fD  116 (185)
T KOG3420|consen   40 IHNTYGDI-EGKKLKDLGCGCGMLS--IAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFD  116 (185)
T ss_pred             HHhhhccc-cCcchhhhcCchhhhH--HHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEe
Confidence            33444423 4589999999999998  555666665 799999 8888887764     35788889988866643   6


Q ss_pred             EEEe
Q 024046          258 AILM  261 (273)
Q Consensus       258 ~~~l  261 (273)
                      ..++
T Consensus       117 tavi  120 (185)
T KOG3420|consen  117 TAVI  120 (185)
T ss_pred             eEEe
Confidence            6554

>PRK00536 speE spermidine synthase; Provisional

Probab=96.91  E-value=0.0019  Score=56.49  Aligned_cols=64  Identities=9%  Similarity=-0.015  Sum_probs=50.4

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcccCCCCC-C-CCEEEe
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFESVP-E-GDAILM  261 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------~~ri~~~~gD~f~~~p-~-~D~~~l  261 (273)
                      -+++++||=||||.|..+++++|. |+ +++.+|+ ++|++.+++          ++|++++.  ++.... + -|+|++
T Consensus        70 h~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~--~~~~~~~~~fDVIIv  145 (262)
T PRK00536         70 KKELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK--QLLDLDIKKYDLIIC  145 (262)
T ss_pred             CCCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee--hhhhccCCcCCEEEE
Confidence            357899999999999999999998 55 8999999 888887766          28999886  343323 3 398876


Q ss_pred             c
Q 024046          262 K  262 (273)
Q Consensus       262 ~  262 (273)
                      =
T Consensus       146 D  146 (262)
T PRK00536        146 L  146 (262)
T ss_pred             c
Confidence            4

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=96.90  E-value=0.0014  Score=53.66  Aligned_cols=74  Identities=15%  Similarity=0.124  Sum_probs=47.2

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCC---------CCCceEEEcccCCCC-----C-C-CCE
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS---------YAGVEHVGGNMFESV-----P-E-GDA  258 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~---------~~ri~~~~gD~f~~~-----p-~-~D~  258 (273)
                      .....+||++|||.|..++.+++.++..++++=|.+++++..+.         .+++++.+.|+-++.     . . .|+
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~  122 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV  122 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred             hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence            34678999999999999999999988888999999777664432         267899999887632     2 2 399


Q ss_pred             EEeccccccc
Q 024046          259 ILMKVGNFEN  268 (273)
Q Consensus       259 ~~l~~vLHd~  268 (273)
                      |+.+-|+++.
T Consensus       123 IlasDv~Y~~  132 (173)
T PF10294_consen  123 ILASDVLYDE  132 (173)
T ss_dssp             EEEES--S-G
T ss_pred             EEEecccchH
Confidence            9999999874

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=96.88  E-value=0.001  Score=62.39  Aligned_cols=71  Identities=28%  Similarity=0.406  Sum_probs=53.4

Q ss_pred             HHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCC---CC---
Q 024046          188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES---VP---  254 (273)
Q Consensus       188 il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~---~p---  254 (273)
                      +.+.+. ..+..+|+|+|||+|.++..+++...  +++++|. |++++.|+.+      ++|+++.+|+.+.   ++   
T Consensus       284 ~~~~l~-~~~~~~vLDl~cG~G~~sl~la~~~~--~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~  360 (431)
T TIGR00479       284 ALEALE-LQGEELVVDAYCGVGTFTLPLAKQAK--SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAG  360 (431)
T ss_pred             HHHHhc-cCCCCEEEEcCCCcCHHHHHHHHhCC--EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcC
Confidence            334333 55668999999999999999998853  6899998 8888877652      6899999998652   21   


Q ss_pred             C-CCEEEe
Q 024046          255 E-GDAILM  261 (273)
Q Consensus       255 ~-~D~~~l  261 (273)
                      . .|++++
T Consensus       361 ~~~D~vi~  368 (431)
T TIGR00479       361 QIPDVLLL  368 (431)
T ss_pred             CCCCEEEE
Confidence            1 288775

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=96.86  E-value=0.0016  Score=51.16  Aligned_cols=52  Identities=17%  Similarity=0.234  Sum_probs=41.9

Q ss_pred             eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCC
Q 024046          200 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE  251 (273)
Q Consensus       200 ~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~  251 (273)
                      +++|||||.|.++..+++.+|..+++.+|. |...+.++..      ++++++...+..
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence            589999999999999999999999999997 7777655431      457777766654

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=96.86  E-value=0.0011  Score=57.54  Aligned_cols=67  Identities=25%  Similarity=0.316  Sum_probs=53.6

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcccCC---CCCC-C-CE
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFE---SVPE-G-DA  258 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------~~ri~~~~gD~f~---~~p~-~-D~  258 (273)
                      .+++++||=||||.|..+..+++..|-.+.+++|+ |.|++.++.          ++|++++.+|-+.   ..++ . |+
T Consensus        74 ~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv  153 (246)
T PF01564_consen   74 HPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV  153 (246)
T ss_dssp             SSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred             CCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence            34789999999999999999998877788999999 888888764          2799999999976   3444 4 88


Q ss_pred             EEe
Q 024046          259 ILM  261 (273)
Q Consensus       259 ~~l  261 (273)
                      +++
T Consensus       154 Ii~  156 (246)
T PF01564_consen  154 IIV  156 (246)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            865

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.85  E-value=0.0038  Score=52.29  Aligned_cols=75  Identities=15%  Similarity=0.131  Sum_probs=48.4

Q ss_pred             CcceEEEecCCccH----HHHHHHHHC---C--CCeEEEeec-hHHHHhCCCC---------------------------
Q 024046          197 NVERLVDVGGGFGV----TLSMITSKY---P--QIKAVNFDL-PHVVQDAPSY---------------------------  239 (273)
Q Consensus       197 ~~~~vvDVGGG~G~----~~~~l~~~~---P--~l~~~~~Dl-p~v~~~a~~~---------------------------  239 (273)
                      +.-+|...||++|.    +++.+.+..   .  +.+.++-|+ +.+++.|+.-                           
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            56899999999998    444444421   2  356788898 8888877530                           


Q ss_pred             -------CCceEEEcccCC-CCCC-C-CEEEecccccccCCC
Q 024046          240 -------AGVEHVGGNMFE-SVPE-G-DAILMKVGNFENYQS  271 (273)
Q Consensus       240 -------~ri~~~~gD~f~-~~p~-~-D~~~l~~vLHd~~~~  271 (273)
                             .+|+|..+|+.+ +.+. . |+|+++|||-.++++
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~  152 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPE  152 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HH
T ss_pred             eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHH
Confidence                   679999999999 3333 3 999999999888654

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A

Probab=96.84  E-value=0.0021  Score=40.84  Aligned_cols=45  Identities=18%  Similarity=0.323  Sum_probs=39.2

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCcee
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLE   93 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~   93 (273)
                      .+..|+..|.+.++.|..|||+.+|+    +...+.+.++-|...|+++
T Consensus         4 ~~~~Il~~l~~~~~~t~~ela~~~~i----s~~tv~~~l~~L~~~g~I~   48 (48)
T PF13412_consen    4 TQRKILNYLRENPRITQKELAEKLGI----SRSTVNRYLKKLEEKGLIE   48 (48)
T ss_dssp             HHHHHHHHHHHCTTS-HHHHHHHHTS-----HHHHHHHHHHHHHTTSEE
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHhCC----CHHHHHHHHHHHHHCcCcC
Confidence            45678899999888999999999999    9999999999999999985

...

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=96.84  E-value=0.0069  Score=52.68  Aligned_cols=68  Identities=12%  Similarity=0.394  Sum_probs=52.0

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCC----CCCCceEEEcccCC-CCCC
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP----SYAGVEHVGGNMFE-SVPE  255 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~----~~~ri~~~~gD~f~-~~p~  255 (273)
                      .+.+++..+ ..+..+|++||+|.|++...|+++...  .+++++ +..++..+    ..++++++.||+.+ ++|+
T Consensus        19 ~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~~~--v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~   92 (259)
T COG0030          19 IDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERAAR--VTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPS   92 (259)
T ss_pred             HHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhcCe--EEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchh
Confidence            466777766 556789999999999999999999877  455555 33333332    34899999999998 7774

>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional

Probab=96.81  E-value=0.0023  Score=55.86  Aligned_cols=58  Identities=14%  Similarity=0.275  Sum_probs=49.3

Q ss_pred             hChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhch
Q 024046           47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK  110 (273)
Q Consensus        47 lglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~  110 (273)
                      +.|+++|...++.|+.|||+.+|+    +...+.|+|+-|+..|+++.+  ...+.|++++..-
T Consensus        17 l~IL~~l~~~~~l~l~eia~~lgl----~kstv~Rll~tL~~~G~l~~~--~~~~~Y~lG~~~~   74 (257)
T PRK15090         17 FGILQALGEEREIGITELSQRVMM----SKSTVYRFLQTMKTLGYVAQE--GESEKYSLTLKLF   74 (257)
T ss_pred             HHHHHHhhcCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEc--CCCCcEEecHHHH
Confidence            456777776568999999999999    999999999999999999874  2468899998653

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=96.79  E-value=0.0015  Score=60.27  Aligned_cols=63  Identities=10%  Similarity=0.084  Sum_probs=48.3

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCCCC---C-CCEEEe
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP---E-GDAILM  261 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~p---~-~D~~~l  261 (273)
                      ...+|+|+|||+|.++..++..  ..+++++|. |..++.|+.+      ++++++.+|+.+..+   . .|++++
T Consensus       233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~  306 (374)
T TIGR02085       233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLV  306 (374)
T ss_pred             CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEE
Confidence            3478999999999999999965  457899998 8878776642      579999999965222   2 387765

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=96.77  E-value=0.00074  Score=56.08  Aligned_cols=58  Identities=19%  Similarity=0.425  Sum_probs=42.5

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHHh----C---CC------CCCceEEEcccCCCCC
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLP-HVVQD----A---PS------YAGVEHVGGNMFESVP  254 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp-~v~~~----a---~~------~~ri~~~~gD~f~~~p  254 (273)
                      ....++|||||.|.+++.|...||+.-.+++++- .|.+-    +   +.      ..+|.++..+-+.-+|
T Consensus        60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lp  131 (249)
T KOG3115|consen   60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLP  131 (249)
T ss_pred             ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhcc
Confidence            4467999999999999999999999999999873 33221    1   11      1567777766666455

>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A

Probab=96.77  E-value=0.0016  Score=46.03  Aligned_cols=57  Identities=21%  Similarity=0.320  Sum_probs=44.2

Q ss_pred             ChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhh
Q 024046           48 GVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV  113 (273)
Q Consensus        48 glfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~  113 (273)
                      .|+..|.. |+.+..+|+..+++    +...+.+.|..|...|+++.    .++.|.+|+.+..++
T Consensus        10 ~IL~~l~~-~~~~~t~i~~~~~L----~~~~~~~yL~~L~~~gLI~~----~~~~Y~lTekG~~~l   66 (77)
T PF14947_consen   10 DILKILSK-GGAKKTEIMYKANL----NYSTLKKYLKELEEKGLIKK----KDGKYRLTEKGKEFL   66 (77)
T ss_dssp             HHHHHH-T-T-B-HHHHHTTST------HHHHHHHHHHHHHTTSEEE----ETTEEEE-HHHHHHH
T ss_pred             HHHHHHHc-CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCcCeeC----CCCEEEECccHHHHH
Confidence            35566654 79999999999999    99999999999999999974    678999999997665

>PHA00738 putative HTH transcription regulator

Probab=96.74  E-value=0.0028  Score=47.25  Aligned_cols=62  Identities=23%  Similarity=0.203  Sum_probs=49.8

Q ss_pred             HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhc
Q 024046           44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS  109 (273)
Q Consensus        44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s  109 (273)
                      ..++.|++.|...++.++.+|++.+++    +.+.+.+.|+.|...|+|.....+..-.|++++..
T Consensus        12 ptRr~IL~lL~~~e~~~V~eLae~l~l----SQptVS~HLKvLreAGLV~srK~Gr~vyY~Ln~~~   73 (108)
T PHA00738         12 ILRRKILELIAENYILSASLISHTLLL----SYTTVLRHLKILNEQGYIELYKEGRTLYAKIRENS   73 (108)
T ss_pred             HHHHHHHHHHHHcCCccHHHHHHhhCC----CHHHHHHHHHHHHHCCceEEEEECCEEEEEECCCc
Confidence            478889999988447999999999999    99999999999999999997421122356666543

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=96.73  E-value=0.0038  Score=58.77  Aligned_cols=96  Identities=21%  Similarity=0.276  Sum_probs=59.7

Q ss_pred             chhhhhhcCcchHHHHHHHHHhcchhhHHHHHhhcccCC---CcceEEEecCCccHHHHHHHHHC----CCCeEEEeec-
Q 024046          158 HIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQ---NVERLVDVGGGFGVTLSMITSKY----PQIKAVNFDL-  229 (273)
Q Consensus       158 ~~~~~~~~~~~~~~~f~~am~~~~~~~~~~il~~~~~~~---~~~~vvDVGGG~G~~~~~l~~~~----P~l~~~~~Dl-  229 (273)
                      ..|+.+++|+.+-+.|.+|+..       .+.+....-+   +...|+|||+|+|-++...+++.    -..++..++- 
T Consensus       151 ~tYe~fE~D~vKY~~Ye~AI~~-------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn  223 (448)
T PF05185_consen  151 QTYEVFEKDPVKYDQYERAIEE-------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKN  223 (448)
T ss_dssp             HHHHHHCC-HHHHHHHHHHHHH-------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESS
T ss_pred             ccHhhHhcCHHHHHHHHHHHHH-------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence            4677788887766666666521       2222222011   35789999999999987666654    4567888886 


Q ss_pred             hHHHHhC----CC---CCCceEEEcccCC-CCCC-CCEEE
Q 024046          230 PHVVQDA----PS---YAGVEHVGGNMFE-SVPE-GDAIL  260 (273)
Q Consensus       230 p~v~~~a----~~---~~ri~~~~gD~f~-~~p~-~D~~~  260 (273)
                      |..+...    +.   .++|+++.+|+.+ ..|+ .|+++
T Consensus       224 ~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIV  263 (448)
T PF05185_consen  224 PNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIV  263 (448)
T ss_dssp             THHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEE
T ss_pred             HhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEE
Confidence            5433222    11   2899999999998 6776 49875

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=96.71  E-value=0.0018  Score=51.21  Aligned_cols=70  Identities=16%  Similarity=0.299  Sum_probs=48.6

Q ss_pred             CCCcceEEEecCCccHHHHHHHHH----CCCCeEEEeec-hHHHHhCCCC---------CCceEEEcccCCC-CCCC-CE
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSK----YPQIKAVNFDL-PHVVQDAPSY---------AGVEHVGGNMFES-VPEG-DA  258 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~----~P~l~~~~~Dl-p~v~~~a~~~---------~ri~~~~gD~f~~-~p~~-D~  258 (273)
                      -.+..+|||+|||.|.++..|+..    .|+++++++|. +..++.+...         .++++..+++... .+.. ++
T Consensus        23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (141)
T PF13679_consen   23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI  102 (141)
T ss_pred             cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence            457889999999999999999992    28899999997 5555555431         5667777766542 2222 55


Q ss_pred             EEeccc
Q 024046          259 ILMKVG  264 (273)
Q Consensus       259 ~~l~~v  264 (273)
                      ++--|.
T Consensus       103 ~vgLHa  108 (141)
T PF13679_consen  103 LVGLHA  108 (141)
T ss_pred             EEEeec
Confidence            554443

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=96.69  E-value=0.0049  Score=58.16  Aligned_cols=67  Identities=21%  Similarity=0.242  Sum_probs=51.7

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCCC------CCceEEEcccCCCCCC--CCEEEe
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE--GDAILM  261 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~p~--~D~~~l  261 (273)
                      .....+|||+|||+|..+..+++..+ ..+++.+|+ +..++.++++      ++|+++.+|..+..+.  .|+|++
T Consensus       248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~  324 (445)
T PRK14904        248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILL  324 (445)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEE
Confidence            44567999999999999998888764 457899998 7777766542      5689999999873343  399886

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=96.69  E-value=0.0012  Score=55.65  Aligned_cols=68  Identities=21%  Similarity=0.423  Sum_probs=52.7

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCC-------CC--
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVP-------EG--  256 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p-------~~--  256 (273)
                      ..++++||+||++.|..++.+++..| +.+.+.+|. |+..+.|++.       +||+++.||..+-+|       .+  
T Consensus        43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f  122 (205)
T PF01596_consen   43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF  122 (205)
T ss_dssp             HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred             hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence            45789999999999999999999988 588999998 7777766542       799999999976211       12  


Q ss_pred             CEEEec
Q 024046          257 DAILMK  262 (273)
Q Consensus       257 D~~~l~  262 (273)
                      |.||+-
T Consensus       123 D~VFiD  128 (205)
T PF01596_consen  123 DFVFID  128 (205)
T ss_dssp             EEEEEE
T ss_pred             eEEEEc
Confidence            888874

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=96.69  E-value=0.006  Score=55.02  Aligned_cols=68  Identities=19%  Similarity=0.191  Sum_probs=55.6

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCCCCceEEEcccCCCCC-C-C-CEEEeccc
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVP-E-G-DAILMKVG  264 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~~ri~~~~gD~f~~~p-~-~-D~~~l~~v  264 (273)
                      +....++||||+++|.++-.++++  +.+++.+|.-++.+.....+||+++.+|-|...| . . |++++-.+
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv  279 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV  279 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecc
Confidence            346789999999999999999998  5689999987776666777999999999998554 3 2 88776544

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=96.67  E-value=0.011  Score=49.57  Aligned_cols=113  Identities=14%  Similarity=0.219  Sum_probs=60.9

Q ss_pred             HHhhhHHHHHhcCCCcchhccCCchhhhhhcCcchHHHHHHHHH----hcchhhHHHHHhhcccCCCcceEEEecCCccH
Q 024046          135 ESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMF----NHSTIAMERILEHYEGFQNVERLVDVGGGFGV  210 (273)
Q Consensus       135 ~~~~~L~e~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~am~----~~~~~~~~~il~~~~~~~~~~~vvDVGGG~G~  210 (273)
                      ..++.|.|.+.+..+       ...++.+..+|+....|++..+    .+-....+.+++.+...++...|.|.|||.+.
T Consensus        13 srFR~lNE~LYT~~s-------~~A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~   85 (219)
T PF05148_consen   13 SRFRWLNEQLYTTSS-------EEALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAK   85 (219)
T ss_dssp             HHHHHHHHHHHHS-H-------HHHHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-H
T ss_pred             CchHHHHHhHhcCCH-------HHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHH
Confidence            456778888776432       2445556677776555554433    23333455666665534456799999999999


Q ss_pred             HHHHHHHHCCCCeEEEeechHHHHhCCCCCCceEEEcccCC-CCCCC--CEEEecccc
Q 024046          211 TLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILMKVGN  265 (273)
Q Consensus       211 ~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~~ri~~~~gD~f~-~~p~~--D~~~l~~vL  265 (273)
                      ++..+.+   ..++.-+||-.     . ++  .+++.|+-+ |++.+  |+++++-.|
T Consensus        86 la~~~~~---~~~V~SfDLva-----~-n~--~Vtacdia~vPL~~~svDv~VfcLSL  132 (219)
T PF05148_consen   86 LAKAVPN---KHKVHSFDLVA-----P-NP--RVTACDIANVPLEDESVDVAVFCLSL  132 (219)
T ss_dssp             HHHH--S------EEEEESS------S-ST--TEEES-TTS-S--TT-EEEEEEES--
T ss_pred             HHHhccc---CceEEEeeccC-----C-CC--CEEEecCccCcCCCCceeEEEEEhhh
Confidence            9866532   34688899822     1 23  367899966 77765  988776544

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=96.66  E-value=0.0025  Score=61.11  Aligned_cols=65  Identities=14%  Similarity=0.201  Sum_probs=48.1

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec--hHHHHhCCC-----CCCceEEEcccCC---CCCCC--CEEEe
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL--PHVVQDAPS-----YAGVEHVGGNMFE---SVPEG--DAILM  261 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl--p~v~~~a~~-----~~ri~~~~gD~f~---~~p~~--D~~~l  261 (273)
                      +...+||||||.|.++..+++++|+..++++|.  +.+...++.     ..++.++.+|+-.   .+|.+  |.+++
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i  423 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYI  423 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEE
Confidence            467899999999999999999999999999998  444332222     2677788887632   36654  55554

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=96.65  E-value=0.0059  Score=53.66  Aligned_cols=75  Identities=16%  Similarity=0.149  Sum_probs=57.9

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCC--CeEEEeec-hHHHHhCCC------CCC-ceEEEcccCCC------CCCCCEE
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQ--IKAVNFDL-PHVVQDAPS------YAG-VEHVGGNMFES------VPEGDAI  259 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~--l~~~~~Dl-p~v~~~a~~------~~r-i~~~~gD~f~~------~p~~D~~  259 (273)
                      ..+.+||||.||+|.+....+..+|.  .++.+.|. |..++..++      ... ++|..+|.|..      .|.-+++
T Consensus       134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~  213 (311)
T PF12147_consen  134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA  213 (311)
T ss_pred             CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence            36789999999999999999999998  77888897 666665543      244 49999999982      2233888


Q ss_pred             EecccccccCC
Q 024046          260 LMKVGNFENYQ  270 (273)
Q Consensus       260 ~l~~vLHd~~~  270 (273)
                      +.+-+.-.++|
T Consensus       214 iVsGL~ElF~D  224 (311)
T PF12147_consen  214 IVSGLYELFPD  224 (311)
T ss_pred             EEecchhhCCc
Confidence            88776666655

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=96.64  E-value=0.0022  Score=54.07  Aligned_cols=63  Identities=21%  Similarity=0.256  Sum_probs=48.7

Q ss_pred             EEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcccCCCCCC---CCEEEecc
Q 024046          201 LVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFESVPE---GDAILMKV  263 (273)
Q Consensus       201 vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gD~f~~~p~---~D~~~l~~  263 (273)
                      |.||||-+|.+.+.|++...--+++..|+ |.-++.|+.       .++|++.-||-+++++.   .|+++++-
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAG   74 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAG   74 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEE
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEec
Confidence            68999999999999999999989999998 776776654       28999999999997764   37777653

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=96.64  E-value=0.0031  Score=53.81  Aligned_cols=73  Identities=22%  Similarity=0.267  Sum_probs=57.5

Q ss_pred             ceEEEecCCccHHHHHHHHHCCC--CeEEEeec-hHHHHhCCCC-----CCceEEEcccCC-----CCCCC--CEEEecc
Q 024046          199 ERLVDVGGGFGVTLSMITSKYPQ--IKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-----SVPEG--DAILMKV  263 (273)
Q Consensus       199 ~~vvDVGGG~G~~~~~l~~~~P~--l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~-----~~p~~--D~~~l~~  263 (273)
                      .+|++||||.|...-.|++.+|+  ++....|- |..++..+.+     .|+..-..|+-.     +.+++  |++++.-
T Consensus        73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF  152 (264)
T KOG2361|consen   73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF  152 (264)
T ss_pred             hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence            48999999999999999999999  88999996 8888876653     566666667655     23344  9999888


Q ss_pred             cccccCCC
Q 024046          264 GNFENYQS  271 (273)
Q Consensus       264 vLHd~~~~  271 (273)
                      ||--.+++
T Consensus       153 vLSAi~pe  160 (264)
T KOG2361|consen  153 VLSAIHPE  160 (264)
T ss_pred             EEeccChH
Confidence            88766554

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=96.60  E-value=0.0093  Score=50.81  Aligned_cols=74  Identities=22%  Similarity=0.268  Sum_probs=55.4

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCC---C---------------CCCceEEEcccCCCCC-
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP---S---------------YAGVEHVGGNMFESVP-  254 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~---~---------------~~ri~~~~gD~f~~~p-  254 (273)
                      .+...+|++.|||.|.-+.-|+++  ..+++++|+ |..++.+.   .               .++|++..||||+--+ 
T Consensus        35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~  112 (218)
T PF05724_consen   35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE  112 (218)
T ss_dssp             TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred             CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence            456679999999999999999988  568999999 77777651   0               1578999999999222 


Q ss_pred             -CC--CEEEecccccccCC
Q 024046          255 -EG--DAILMKVGNFENYQ  270 (273)
Q Consensus       255 -~~--D~~~l~~vLHd~~~  270 (273)
                       .|  |+|+=+-.|+-.++
T Consensus       113 ~~g~fD~iyDr~~l~Alpp  131 (218)
T PF05724_consen  113 DVGKFDLIYDRTFLCALPP  131 (218)
T ss_dssp             CHHSEEEEEECSSTTTS-G
T ss_pred             hcCCceEEEEecccccCCH
Confidence             12  99887777765554

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK11569 transcriptional repressor IclR; Provisional

Probab=96.60  E-value=0.0041  Score=54.83  Aligned_cols=58  Identities=21%  Similarity=0.270  Sum_probs=49.2

Q ss_pred             hChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhch
Q 024046           47 LGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK  110 (273)
Q Consensus        47 lglfd~L~~~-g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~  110 (273)
                      +.|+++|.+. ++.|+.|||+.+|+    +..-+.|+|.-|+..|+++.+  ...+.|++.+..-
T Consensus        31 l~IL~~l~~~~~~~~lseia~~lgl----pksTv~RlL~tL~~~G~l~~~--~~~~~Y~lG~~l~   89 (274)
T PRK11569         31 LKLLEWIAESNGSVALTELAQQAGL----PNSTTHRLLTTMQQQGFVRQV--GELGHWAIGAHAF   89 (274)
T ss_pred             HHHHHHHHhCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEc--CCCCeEecCHHHH
Confidence            4577788764 48999999999999    999999999999999999874  3568999988653

>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A

Probab=96.57  E-value=0.004  Score=42.35  Aligned_cols=59  Identities=19%  Similarity=0.367  Sum_probs=41.7

Q ss_pred             hChhHHHH-hCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccC---CCcceecChhc
Q 024046           47 LGVFEIIA-KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVS  109 (273)
Q Consensus        47 lglfd~L~-~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~---~~~~y~lt~~s  109 (273)
                      .-++..|. ..++.|..+|++.+++    +...+.+.++-|...|++++....   +...|++|+.+
T Consensus         6 ~~vL~~l~~~~~~~t~~~l~~~~~~----~~~~vs~~i~~L~~~glv~~~~~~~d~R~~~~~LT~~G   68 (68)
T PF13463_consen    6 WQVLRALAHSDGPMTQSDLAERLGI----SKSTVSRIIKKLEEKGLVEKERDPHDKRSKRYRLTPAG   68 (68)
T ss_dssp             HHHHHHHT--TS-BEHHHHHHHTT------HHHHHHHHHHHHHTTSEEEEEESSCTTSEEEEE-HHH
T ss_pred             HHHHHHHHccCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecCCCCcCCeeEEEeCCCC
Confidence            34555666 4469999999999999    999999999999999999764321   22468888754

>TIGR00095 RNA methyltransferase, RsmD family

Probab=96.55  E-value=0.0033  Score=52.29  Aligned_cols=54  Identities=19%  Similarity=0.055  Sum_probs=44.1

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE  251 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~  251 (273)
                      ...++||++||+|.++.+++++... +++.+|. +..++.++.+       ++++++.+|.++
T Consensus        49 ~g~~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~  110 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALR  110 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHH
Confidence            3478999999999999999999874 7899998 6666655432       578999999966

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A

Probab=96.55  E-value=0.0031  Score=44.93  Aligned_cols=64  Identities=16%  Similarity=0.196  Sum_probs=49.9

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC----cceecChhchHh
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE----RLYALNPVSKYF  112 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~----~~y~lt~~s~~l  112 (273)
                      ++++|...|...+..++.+|.+.+|+    +...+.+.|..|...|+++......+    ..|++|+.++..
T Consensus         1 vRl~Il~~L~~~~~~~f~~L~~~l~l----t~g~Ls~hL~~Le~~GyV~~~k~~~~~~p~t~~~lT~~Gr~~   68 (80)
T PF13601_consen    1 VRLAILALLYANEEATFSELKEELGL----TDGNLSKHLKKLEEAGYVEVEKEFEGRRPRTWYSLTDKGREA   68 (80)
T ss_dssp             HHHHHHHHHHHHSEEEHHHHHHHTT------HHHHHHHHHHHHHTTSEEEEEE-SSS--EEEEEE-HHHHHH
T ss_pred             CHHHHHHHHhhcCCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEEEeccCCCCeEEEEECHHHHHH
Confidence            57888999988779999999999999    99999999999999999996432111    258899888643

>PRK10163 DNA-binding transcriptional repressor AllR; Provisional

Probab=96.52  E-value=0.0049  Score=54.22  Aligned_cols=58  Identities=14%  Similarity=0.188  Sum_probs=49.4

Q ss_pred             hChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhch
Q 024046           47 LGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK  110 (273)
Q Consensus        47 lglfd~L~~~g-~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~  110 (273)
                      +.|+++|...+ +.|+.|||+.+|+    +...+.|+|.-|+..|+++.+  ...+.|.+++..-
T Consensus        28 l~IL~~~~~~~~~~tl~eIa~~lgl----pkStv~RlL~tL~~~G~l~~~--~~~~~Y~lG~~l~   86 (271)
T PRK10163         28 IAILQYLEKSGGSSSVSDISLNLDL----PLSTTFRLLKVLQAADFVYQD--SQLGWWHIGLGVF   86 (271)
T ss_pred             HHHHHHHHhCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEc--CCCCeEEecHHHH
Confidence            56788887654 7999999999999    999999999999999999875  3567899998643

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=96.51  E-value=0.0038  Score=52.32  Aligned_cols=75  Identities=13%  Similarity=0.143  Sum_probs=49.5

Q ss_pred             CCCcc-eEEEecCCccHHHHHHHHHCCCCeEEEeechHHH-HhC----CC--CCC-ceEEEcccCCC-CC---------C
Q 024046          195 FQNVE-RLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVV-QDA----PS--YAG-VEHVGGNMFES-VP---------E  255 (273)
Q Consensus       195 ~~~~~-~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~-~~a----~~--~~r-i~~~~gD~f~~-~p---------~  255 (273)
                      ++... +||+||+|+|.++.-+++++|+++.--=|..... ..+    ..  .++ ..-+.-|.-++ +|         .
T Consensus        22 l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~  101 (204)
T PF06080_consen   22 LPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPE  101 (204)
T ss_pred             hCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCC
Confidence            44444 5999999999999999999999987555653222 111    11  122 23344555552 22         2


Q ss_pred             C-CEEEecccccccC
Q 024046          256 G-DAILMKVGNFENY  269 (273)
Q Consensus       256 ~-D~~~l~~vLHd~~  269 (273)
                      . |++++.|++|-.+
T Consensus       102 ~~D~i~~~N~lHI~p  116 (204)
T PF06080_consen  102 SFDAIFCINMLHISP  116 (204)
T ss_pred             CcceeeehhHHHhcC
Confidence            3 9999999999765

The function of this family is unknown.

>COG1414 IclR Transcriptional regulator [Transcription]

Probab=96.48  E-value=0.0051  Score=53.38  Aligned_cols=58  Identities=26%  Similarity=0.379  Sum_probs=48.8

Q ss_pred             hChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhch
Q 024046           47 LGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK  110 (273)
Q Consensus        47 lglfd~L~~~g-~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~  110 (273)
                      +.|+++|...+ +.++.|||+.+|+    +...+.|+|.-|+..|+++.+  ...++|++++..-
T Consensus         7 l~iL~~l~~~~~~l~l~ela~~~gl----pksT~~RlL~tL~~~G~v~~d--~~~g~Y~Lg~~~~   65 (246)
T COG1414           7 LAILDLLAEGPGGLSLAELAERLGL----PKSTVHRLLQTLVELGYVEQD--PEDGRYRLGPRLL   65 (246)
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEc--CCCCcEeehHHHH
Confidence            56888888732 3469999999999    999999999999999999985  2457899999654

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=96.45  E-value=0.0042  Score=55.75  Aligned_cols=64  Identities=19%  Similarity=0.256  Sum_probs=51.6

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCC-------CCCceEEEcccCC-CCC-CC-CEEEe
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVGGNMFE-SVP-EG-DAILM  261 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~-------~~ri~~~~gD~f~-~~p-~~-D~~~l  261 (273)
                      ..++|+|||||+|.+++-.+++. --++.++|-.++++.|.+       .+.|+++.|..-+ .+| +. |+++-
T Consensus        60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvS  133 (346)
T KOG1499|consen   60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVS  133 (346)
T ss_pred             CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEee
Confidence            56899999999999999999988 457899998887776654       1679999998887 677 45 88764

>PLN02476 O-methyltransferase

Probab=96.43  E-value=0.0038  Score=55.01  Aligned_cols=57  Identities=21%  Similarity=0.173  Sum_probs=47.8

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE  251 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~  251 (273)
                      ..++++|||||+++|..++.+++..| +-+.+.+|. |+..+.|+++       ++|+++.||..+
T Consensus       116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e  181 (278)
T PLN02476        116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAE  181 (278)
T ss_pred             hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence            56789999999999999999999876 557889998 7667766542       799999999876

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=96.43  E-value=0.007  Score=49.91  Aligned_cols=74  Identities=22%  Similarity=0.288  Sum_probs=52.7

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCe---------EEEeec-hHHHHhCCCC-------CCceEEEccc
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIK---------AVNFDL-PHVVQDAPSY-------AGVEHVGGNM  249 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~---------~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~  249 (273)
                      .++.... |.+...|+|-=||+|.++++.+...++..         +++.|. +.++..|+.+       ..|.+..+|+
T Consensus        19 ~ll~la~-~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~   97 (179)
T PF01170_consen   19 ALLNLAG-WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDA   97 (179)
T ss_dssp             HHHHHTT---TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--G
T ss_pred             HHHHHhC-CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecch
Confidence            3444444 77788999999999999999988888877         899998 7887766542       5689999999


Q ss_pred             CC-CCCCC--CEEEe
Q 024046          250 FE-SVPEG--DAILM  261 (273)
Q Consensus       250 f~-~~p~~--D~~~l  261 (273)
                      ++ +.+.+  |+++.
T Consensus        98 ~~l~~~~~~~d~Ivt  112 (179)
T PF01170_consen   98 RELPLPDGSVDAIVT  112 (179)
T ss_dssp             GGGGGTTSBSCEEEE
T ss_pred             hhcccccCCCCEEEE
Confidence            98 54443  87765

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=96.42  E-value=0.0041  Score=61.99  Aligned_cols=65  Identities=9%  Similarity=0.017  Sum_probs=51.2

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC--------CCceEEEcccCCC---CCC-CCEEEe
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFES---VPE-GDAILM  261 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~--------~ri~~~~gD~f~~---~p~-~D~~~l  261 (273)
                      .+.++|||+|||+|.++..+++. ...+++.+|+ +..++.|+.+        ++++++.+|.++.   .+. .|+|++
T Consensus       537 ~~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIil  614 (702)
T PRK11783        537 AKGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFI  614 (702)
T ss_pred             cCCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEE
Confidence            35689999999999999999986 3346999998 7777776642        4899999999873   233 399987

>PRK09834 DNA-binding transcriptional activator MhpR; Provisional

Probab=96.41  E-value=0.0062  Score=53.31  Aligned_cols=62  Identities=13%  Similarity=0.121  Sum_probs=51.3

Q ss_pred             HHhChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHh
Q 024046           45 IQLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYF  112 (273)
Q Consensus        45 ~elglfd~L~~~g-~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l  112 (273)
                      --+.|+++|...+ +.|+.|||+.+|+    +...+.|+|..|...|+++++  ..++.|++++....+
T Consensus        12 ral~iL~~l~~~~~~ls~~eia~~lgl----~kstv~RlL~tL~~~g~v~~~--~~~~~Y~Lg~~~~~l   74 (263)
T PRK09834         12 RGLMVLRALNRLDGGATVGLLAELTGL----HRTTVRRLLETLQEEGYVRRS--ASDDSFRLTLKVRQL   74 (263)
T ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe--cCCCcEEEcHHHHHH
Confidence            3456788887654 6999999999999    999999999999999999975  246789999876544

>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR

Probab=96.41  E-value=0.016  Score=44.18  Aligned_cols=68  Identities=16%  Similarity=0.211  Sum_probs=54.3

Q ss_pred             HHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhhc
Q 024046           43 AAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFVS  114 (273)
Q Consensus        43 ~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~~  114 (273)
                      +..+..++..|...++.|..+||+.+++    +...+.++++-|...|+++......+   -.+.+|+.+..+..
T Consensus        27 t~~q~~iL~~l~~~~~~t~~ela~~~~~----~~~tvs~~l~~Le~~GlI~r~~~~~D~R~~~v~LT~~G~~~~~   97 (118)
T TIGR02337        27 TEQQWRILRILAEQGSMEFTQLANQACI----LRPSLTGILARLERDGLVTRLKASNDQRRVYISLTPKGQALYA   97 (118)
T ss_pred             CHHHHHHHHHHHHcCCcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence            3455568888887789999999999999    99999999999999999997421112   36889998876653

This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.

>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family

Probab=96.40  E-value=0.0058  Score=52.96  Aligned_cols=58  Identities=22%  Similarity=0.267  Sum_probs=49.3

Q ss_pred             hChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHh
Q 024046           47 LGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYF  112 (273)
Q Consensus        47 lglfd~L~~~-g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l  112 (273)
                      +.|+++|... ++.|+.|||+.+|+    +...+.|+|.-|+..|+++.    ..+.|++++....+
T Consensus        12 l~IL~~l~~~~~~~~l~eia~~lgl----pksT~~RlL~tL~~~G~l~~----~~~~Y~lG~~~~~l   70 (248)
T TIGR02431        12 LAVIEAFGAERPRLTLTDVAEATGL----TRAAARRFLLTLVELGYVTS----DGRLFWLTPRVLRL   70 (248)
T ss_pred             HHHHHHHhcCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEe----CCCEEEecHHHHHH
Confidence            5678888763 48999999999999    99999999999999999996    35789999865433

Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=96.37  E-value=0.0043  Score=57.56  Aligned_cols=66  Identities=18%  Similarity=0.123  Sum_probs=49.5

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC--------CCceEEEcccCCCC------CC-CCEE
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFESV------PE-GDAI  259 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~--------~ri~~~~gD~f~~~------p~-~D~~  259 (273)
                      .+..+|||+|||+|.++...+.. +..+++.+|+ +..++.|+++        ++++++.+|.|+.+      .. .|+|
T Consensus       219 ~~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV  297 (396)
T PRK15128        219 VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI  297 (396)
T ss_pred             cCCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence            35689999999999998876653 4457999998 7777766542        37899999999732      12 3998


Q ss_pred             Eec
Q 024046          260 LMK  262 (273)
Q Consensus       260 ~l~  262 (273)
                      ++-
T Consensus       298 ilD  300 (396)
T PRK15128        298 VMD  300 (396)
T ss_pred             EEC
Confidence            864

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=96.35  E-value=0.011  Score=55.48  Aligned_cols=73  Identities=22%  Similarity=0.222  Sum_probs=53.2

Q ss_pred             HHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------C-CceEEEcccCCC-C--CC-
Q 024046          188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A-GVEHVGGNMFES-V--PE-  255 (273)
Q Consensus       188 il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~-ri~~~~gD~f~~-~--p~-  255 (273)
                      +...++ ..+..+|+|+|||+|..+..+++..|+.+.+.+|. +..++.++.+      + +++++.+|.... .  +. 
T Consensus       230 ~~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~  308 (426)
T TIGR00563       230 VATWLA-PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENE  308 (426)
T ss_pred             HHHHhC-CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccccc
Confidence            334444 55668999999999999999999998888999998 7777666532      2 344477887652 2  22 


Q ss_pred             -CCEEEe
Q 024046          256 -GDAILM  261 (273)
Q Consensus       256 -~D~~~l  261 (273)
                       .|.|++
T Consensus       309 ~fD~Vll  315 (426)
T TIGR00563       309 QFDRILL  315 (426)
T ss_pred             ccCEEEE
Confidence             399886

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=96.34  E-value=0.0089  Score=56.23  Aligned_cols=71  Identities=14%  Similarity=0.035  Sum_probs=53.3

Q ss_pred             hhcccCCCcceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCCC------CCceEEEcccCC-C----CCC-
Q 024046          190 EHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S----VPE-  255 (273)
Q Consensus       190 ~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~----~p~-  255 (273)
                      ..++ ..+..+|+|+|||+|..+..+++..+ ..+++.+|. +..++.++.+      ++|+++.+|..+ +    .+. 
T Consensus       246 ~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~  324 (434)
T PRK14901        246 PLLD-PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRG  324 (434)
T ss_pred             HHhC-CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccc
Confidence            3344 45668999999999999999999864 468899998 7777666432      568999999876 2    222 


Q ss_pred             -CCEEEe
Q 024046          256 -GDAILM  261 (273)
Q Consensus       256 -~D~~~l  261 (273)
                       .|.|++
T Consensus       325 ~fD~Vl~  331 (434)
T PRK14901        325 YFDRILL  331 (434)
T ss_pred             cCCEEEE
Confidence             399987

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=96.27  E-value=0.017  Score=49.79  Aligned_cols=85  Identities=18%  Similarity=0.273  Sum_probs=65.1

Q ss_pred             HHHhcchhh----HHHHHhhcccCCCcceEEEecCCccHHHHHHHH-HCCCCeEEEeec-hHHHHhCCCC-------CCc
Q 024046          176 AMFNHSTIA----MERILEHYEGFQNVERLVDVGGGFGVTLSMITS-KYPQIKAVNFDL-PHVVQDAPSY-------AGV  242 (273)
Q Consensus       176 am~~~~~~~----~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~-~~P~l~~~~~Dl-p~v~~~a~~~-------~ri  242 (273)
                      .|...++..    +..|+...+ ..+..+|+|.|-|+|.++..|+. -.|.-+.+.+|. ++-.+.|.++       ++|
T Consensus        70 ~~~R~tQiIyPKD~~~I~~~~g-i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v  148 (256)
T COG2519          70 SMKRRTQIIYPKDAGYIVARLG-ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRV  148 (256)
T ss_pred             hCcCCCceecCCCHHHHHHHcC-CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccce
Confidence            365555532    334566665 88899999999999999999997 678888999997 7777777653       779


Q ss_pred             eEEEcccCCC-CCCC-CEEEe
Q 024046          243 EHVGGNMFES-VPEG-DAILM  261 (273)
Q Consensus       243 ~~~~gD~f~~-~p~~-D~~~l  261 (273)
                      ++..+|..+. .+.. |++++
T Consensus       149 ~~~~~Dv~~~~~~~~vDav~L  169 (256)
T COG2519         149 TLKLGDVREGIDEEDVDAVFL  169 (256)
T ss_pred             EEEeccccccccccccCEEEE
Confidence            9999999984 3333 88876

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=96.25  E-value=0.017  Score=49.75  Aligned_cols=72  Identities=13%  Similarity=0.149  Sum_probs=53.8

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-----CCCceEEEcccCCCCCCC--CEEEecccccc
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----YAGVEHVGGNMFESVPEG--DAILMKVGNFE  267 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~ri~~~~gD~f~~~p~~--D~~~l~~vLHd  267 (273)
                      +.+.+|+|||||---++.-.....|+++.++.|+ ++.++....     ..+.++...|.....|+.  |+.++..++|.
T Consensus       104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp~  183 (251)
T PF07091_consen  104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLPC  183 (251)
T ss_dssp             ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HHH
T ss_pred             CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHHH
Confidence            3589999999999999999999999999999999 555554433     267888889999987753  99999998875

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=96.25  E-value=0.0048  Score=56.40  Aligned_cols=51  Identities=14%  Similarity=0.144  Sum_probs=43.3

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCC
Q 024046          199 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE  251 (273)
Q Consensus       199 ~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~  251 (273)
                      .++||++||+|.++..+++...  +++++|. +.+++.|+++      ++++++.+|..+
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~  256 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE  256 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence            4699999999999999999874  7999998 7788777653      579999999876

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=96.19  E-value=0.011  Score=55.43  Aligned_cols=67  Identities=18%  Similarity=0.132  Sum_probs=51.9

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhCCCC------CCceEEEcccCC-C-C-CC-CCEEEe
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S-V-PE-GDAILM  261 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~-~-p~-~D~~~l  261 (273)
                      ..+..+|||+|||+|..+..+++.. +..+++.+|+ +..++.++++      +.|+++.+|... + . ++ .|.|++
T Consensus       235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~  313 (431)
T PRK14903        235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILV  313 (431)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEE
Confidence            5567899999999999999999886 5678999998 7777666542      468999999875 2 2 23 398886

>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein

Probab=96.18  E-value=0.014  Score=42.57  Aligned_cols=65  Identities=25%  Similarity=0.327  Sum_probs=50.7

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccC---CCcceecChhchHhh
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFV  113 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~---~~~~y~lt~~s~~l~  113 (273)
                      .++.++..|...++.|..+||+.+++    ++..+.+.++-|...|+++.....   ....|.+|+.+..+.
T Consensus        11 ~~~~il~~l~~~~~~~~~~la~~~~~----s~~~i~~~l~~L~~~g~v~~~~~~~~~r~~~~~lT~~g~~~~   78 (101)
T smart00347       11 TQFLVLRILYEEGPLSVSELAKRLGV----SPSTVTRVLDRLEKKGLIRRLPSPEDRRSVLVSLTEEGRELI   78 (101)
T ss_pred             HHHHHHHHHHHcCCcCHHHHHHHHCC----CchhHHHHHHHHHHCCCeEecCCCCCCCeEEEEECHhHHHHH
Confidence            35667888887678999999999999    999999999999999999864210   112577787776544

>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A

Probab=96.08  E-value=0.014  Score=39.33  Aligned_cols=43  Identities=26%  Similarity=0.248  Sum_probs=36.8

Q ss_pred             ChhHHHHh-CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           48 GVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        48 glfd~L~~-~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      .|.+.|.. .+|.+..|||+.+|+    +....+++|..|...|.++.
T Consensus         4 ~Il~~i~~~~~p~~T~eiA~~~gl----s~~~aR~yL~~Le~eG~V~~   47 (62)
T PF04703_consen    4 KILEYIKEQNGPLKTREIADALGL----SIYQARYYLEKLEKEGKVER   47 (62)
T ss_dssp             CHHHHHHHHTS-EEHHHHHHHHTS-----HHHHHHHHHHHHHCTSEEE
T ss_pred             HHHHHHHHcCCCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEE
Confidence            46677777 579999999999999    99999999999999999986

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=96.07  E-value=0.052  Score=47.66  Aligned_cols=74  Identities=14%  Similarity=0.081  Sum_probs=59.1

Q ss_pred             CcceEEEecCCccH----HHHHHHHHCC-----CCeEEEeec-hHHHHhCCCC---------------------------
Q 024046          197 NVERLVDVGGGFGV----TLSMITSKYP-----QIKAVNFDL-PHVVQDAPSY---------------------------  239 (273)
Q Consensus       197 ~~~~vvDVGGG~G~----~~~~l~~~~P-----~l~~~~~Dl-p~v~~~a~~~---------------------------  239 (273)
                      +.-+|.-.||++|.    +++.|.+.+|     ..+.++-|+ ..+++.|+.-                           
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~  175 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS  175 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence            47799999999998    7778888887     467788998 7788877530                           


Q ss_pred             --------CCceEEEcccCCCC--CCC-CEEEecccccccCC
Q 024046          240 --------AGVEHVGGNMFESV--PEG-DAILMKVGNFENYQ  270 (273)
Q Consensus       240 --------~ri~~~~gD~f~~~--p~~-D~~~l~~vLHd~~~  270 (273)
                              ..|.|-.+|.+++.  +.. |+|+|+|||=.++.
T Consensus       176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~  217 (268)
T COG1352         176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDE  217 (268)
T ss_pred             EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCH
Confidence                    45899999999954  344 99999999977653

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.02  E-value=0.0059  Score=51.84  Aligned_cols=68  Identities=13%  Similarity=0.323  Sum_probs=47.0

Q ss_pred             hHHHHHHHHHhcchhhHH----HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC
Q 024046          169 FNETYHEAMFNHSTIAME----RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY  239 (273)
Q Consensus       169 ~~~~f~~am~~~~~~~~~----~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~  239 (273)
                      ..++|.+.....-.+..|    .++...+ ....+++||+|||+|..+..|-..--.  .+++|+ ..+++.|.+.
T Consensus        94 ~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a~~--ltGvDiS~nMl~kA~eK  166 (287)
T COG4976          94 YAERFDHILVDKLGYSVPELLAEMIGKAD-LGPFRRMLDLGCGTGLTGEALRDMADR--LTGVDISENMLAKAHEK  166 (287)
T ss_pred             HHHHHHHHHHHHhcCccHHHHHHHHHhcc-CCccceeeecccCcCcccHhHHHHHhh--ccCCchhHHHHHHHHhc
Confidence            345677666543333333    3344444 455899999999999999988877655  488998 6688888764

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=96.01  E-value=0.011  Score=53.48  Aligned_cols=56  Identities=27%  Similarity=0.474  Sum_probs=47.9

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhCCC-------------CCCceEEEcccCC
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPS-------------YAGVEHVGGNMFE  251 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~-------------~~ri~~~~gD~f~  251 (273)
                      .++..+++-+|||.|.-+++++| ||+ -+.+.+|+ |.|++.++.             ++|++++.-|.|+
T Consensus       287 ~~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~  357 (508)
T COG4262         287 VRGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQ  357 (508)
T ss_pred             ccccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHH
Confidence            45788999999999999999874 784 56899999 999998873             2899999999998

>COG2345 Predicted transcriptional regulator [Transcription]

Probab=96.00  E-value=0.013  Score=49.58  Aligned_cols=63  Identities=29%  Similarity=0.441  Sum_probs=50.3

Q ss_pred             hChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecccc----CCC-cceecChhchHhh
Q 024046           47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS----GGE-RLYALNPVSKYFV  113 (273)
Q Consensus        47 lglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~----~~~-~~y~lt~~s~~l~  113 (273)
                      -.|...|..+||.|+.|||+.+|+    ++..+++.|..|+..|+++....    +++ -.|++|..+...+
T Consensus        14 ~~il~lL~~~g~~sa~elA~~Lgi----s~~avR~HL~~Le~~Glv~~~~~~~g~GRP~~~y~Lt~~g~~~f   81 (218)
T COG2345          14 ERILELLKKSGPVSADELAEELGI----SPMAVRRHLDDLEAEGLVEVERQQGGRGRPAKLYRLTEKGREQF   81 (218)
T ss_pred             HHHHHHHhccCCccHHHHHHHhCC----CHHHHHHHHHHHHhCcceeeeeccCCCCCCceeeeecccchhhc
Confidence            346677887799999999999999    99999999999999999986422    111 2699998876533

>PRK03902 manganese transport transcriptional regulator; Provisional

Probab=95.98  E-value=0.018  Score=45.54  Aligned_cols=55  Identities=24%  Similarity=0.280  Sum_probs=46.5

Q ss_pred             HHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhh
Q 024046           52 IIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV  113 (273)
Q Consensus        52 ~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~  113 (273)
                      .+...|+.++.+||+.+++    ++..+.+.++.|...|++...   ..+.|.+|+.+..+.
T Consensus        16 l~~~~~~~~~~ela~~l~v----s~~svs~~l~~L~~~Gli~~~---~~~~i~LT~~G~~~a   70 (142)
T PRK03902         16 LIEEKGYARVSDIAEALSV----HPSSVTKMVQKLDKDEYLIYE---KYRGLVLTPKGKKIG   70 (142)
T ss_pred             HHhcCCCcCHHHHHHHhCC----ChhHHHHHHHHHHHCCCEEEe---cCceEEECHHHHHHH
Confidence            4455578999999999999    999999999999999999862   446799999987553

>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif

Probab=95.97  E-value=0.0089  Score=41.16  Aligned_cols=44  Identities=18%  Similarity=0.349  Sum_probs=37.6

Q ss_pred             ChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           48 GVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        48 glfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      .|-+.|.+.|..|+.|||..+++    +++.++.+|..|+..|.+++.
T Consensus         4 ~i~~~l~~~~~~S~~eLa~~~~~----s~~~ve~mL~~l~~kG~I~~~   47 (69)
T PF09012_consen    4 EIRDYLRERGRVSLAELAREFGI----SPEAVEAMLEQLIRKGYIRKV   47 (69)
T ss_dssp             HHHHHHHHS-SEEHHHHHHHTT------HHHHHHHHHHHHCCTSCEEE
T ss_pred             HHHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEe
Confidence            36678888889999999999999    999999999999999999974

FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.

>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR

Probab=95.93  E-value=0.016  Score=48.66  Aligned_cols=64  Identities=20%  Similarity=0.317  Sum_probs=50.6

Q ss_pred             HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecccc-CCCc----ceecChhchHhh
Q 024046           46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS-GGER----LYALNPVSKYFV  113 (273)
Q Consensus        46 elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~-~~~~----~y~lt~~s~~l~  113 (273)
                      +..|+..|...|+.|+.+||+.+|+    ++..+.+.|+.|...|+++.... .+.|    .|.+|+.+..+.
T Consensus         3 r~~IL~~L~~~~~~t~~eLA~~lgi----s~~tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~~G~~~~   71 (203)
T TIGR02702         3 KEDILSYLLKQGQATAAALAEALAI----SPQAVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSRQGREQF   71 (203)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEeecccCCCCCceEEEECcchhhhc
Confidence            4457788877789999999999999    99999999999999999986410 0122    478888876554

All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.

>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein

Probab=95.92  E-value=0.016  Score=36.35  Aligned_cols=41  Identities=20%  Similarity=0.173  Sum_probs=36.0

Q ss_pred             CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecC
Q 024046           58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN  106 (273)
Q Consensus        58 ~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt  106 (273)
                      +.|..+||+.+|+    +...+.+.|+.|...|+++.    ..+.|.++
T Consensus         8 ~~s~~~la~~l~~----s~~tv~~~l~~L~~~g~l~~----~~~~~~i~   48 (48)
T smart00419        8 PLTRQEIAELLGL----TRETVSRTLKRLEKEGLISR----EGGRIVIL   48 (48)
T ss_pred             ccCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE----eCCEEEEC
Confidence            7899999999999    99999999999999999986    34666653

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=95.92  E-value=0.019  Score=50.36  Aligned_cols=67  Identities=18%  Similarity=0.099  Sum_probs=50.4

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhCCCC------CCceEEEcccCC-CC--CCCCEEEe
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SV--PEGDAILM  261 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~~--p~~D~~~l  261 (273)
                      ..+..+|||+|||+|..+..+++..++ -.++.+|+ +..++.++++      ++|+++.+|... +.  +..|+|++
T Consensus        69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~  146 (264)
T TIGR00446        69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILL  146 (264)
T ss_pred             CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEE
Confidence            456689999999999999999998754 57899998 7777655432      568899999754 22  23488876

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=95.92  E-value=0.021  Score=51.03  Aligned_cols=66  Identities=21%  Similarity=0.238  Sum_probs=51.1

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCC
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE  251 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~  251 (273)
                      ..++++.+. ..+...+||.=-|.|.++.++++++|+.+.+++|. |.+++.|.+.     +|+.++.++|-+
T Consensus         9 l~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~   80 (310)
T PF01795_consen    9 LKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN   80 (310)
T ss_dssp             HHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred             HHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence            456777776 66778999999999999999999999999999999 8888777643     899999999865

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=95.90  E-value=0.0075  Score=55.35  Aligned_cols=51  Identities=14%  Similarity=0.141  Sum_probs=43.0

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCC
Q 024046          199 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE  251 (273)
Q Consensus       199 ~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~  251 (273)
                      .++||++||+|.++..+++...  +++++|. +..++.++++      ++++++.+|.++
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~  265 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE  265 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence            5799999999999999999875  6899998 7777766542      589999999875

>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp

Probab=95.81  E-value=0.013  Score=41.85  Aligned_cols=46  Identities=30%  Similarity=0.391  Sum_probs=37.8

Q ss_pred             CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChh
Q 024046           58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV  108 (273)
Q Consensus        58 ~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~  108 (273)
                      +.|.++||+.+++    +++.+++++..|...|+++... +..|.|.++..
T Consensus        25 ~~s~~eiA~~~~i----~~~~l~kil~~L~~~Gli~s~~-G~~GGy~L~~~   70 (83)
T PF02082_consen   25 PVSSKEIAERLGI----SPSYLRKILQKLKKAGLIESSR-GRGGGYRLARP   70 (83)
T ss_dssp             -BEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEET-STTSEEEESS-
T ss_pred             CCCHHHHHHHHCc----CHHHHHHHHHHHhhCCeeEecC-CCCCceeecCC
Confidence            5999999999999    9999999999999999998653 24577888764

(strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.

>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor

Probab=95.81  E-value=0.029  Score=36.99  Aligned_cols=54  Identities=24%  Similarity=0.382  Sum_probs=42.2

Q ss_pred             hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecCh
Q 024046           49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP  107 (273)
Q Consensus        49 lfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~  107 (273)
                      |+..|. .++.|..+|++.+++    +...+.+.|+.|...|++..........|.+|.
T Consensus         2 il~~l~-~~~~~~~~i~~~l~i----s~~~v~~~l~~L~~~g~i~~~~~~~~~~~~~~~   55 (66)
T smart00418        2 ILKLLA-EGELCVCELAEILGL----SQSTVSHHLKKLREAGLVESRREGKRVYYSLTD   55 (66)
T ss_pred             HHHHhh-cCCccHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeeeecCCEEEEEEch
Confidence            456666 479999999999999    999999999999999999964212224565555

>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family

Probab=95.78  E-value=0.02  Score=38.60  Aligned_cols=44  Identities=27%  Similarity=0.345  Sum_probs=38.6

Q ss_pred             CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecCh
Q 024046           57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP  107 (273)
Q Consensus        57 g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~  107 (273)
                      ++.|..+||+.+|+    +...+.++|+.|...|++...   ..+.|.++|
T Consensus        24 ~~~s~~ela~~~g~----s~~tv~r~l~~L~~~g~i~~~---~~~~~~l~~   67 (67)
T cd00092          24 LPLTRQEIADYLGL----TRETVSRTLKELEEEGLISRR---GRGKYRVNP   67 (67)
T ss_pred             CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec---CCCeEEeCC
Confidence            58999999999999    999999999999999999973   336787764

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=95.76  E-value=0.012  Score=43.98  Aligned_cols=44  Identities=23%  Similarity=0.331  Sum_probs=31.5

Q ss_pred             hhHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 024046          183 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL  229 (273)
Q Consensus       183 ~~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl  229 (273)
                      +.+.-|-..+. -.....+||||||+|.+.--|.+.  .-+|.++|.
T Consensus        45 yLi~LW~~~~~-~~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~   88 (112)
T PF07757_consen   45 YLIELWRDMYG-EQKFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA   88 (112)
T ss_pred             HHHHHHhcccC-CCCCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence            33334444443 345788999999999998888776  456789986

; GO: 0008168 methyltransferase activity

>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B

Probab=95.76  E-value=0.016  Score=38.55  Aligned_cols=47  Identities=21%  Similarity=0.318  Sum_probs=39.9

Q ss_pred             HHhChhHHHHhCCC--CCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           45 IQLGVFEIIAKAGE--LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        45 ~elglfd~L~~~g~--~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      .+..++-.|...++  .|+.+||+.+++    ++..+.++++.|...|++++.
T Consensus         6 ~q~~vL~~l~~~~~~~~t~~~la~~l~~----~~~~vs~~v~~L~~~Glv~r~   54 (62)
T PF12802_consen    6 SQFRVLMALARHPGEELTQSELAERLGI----SKSTVSRIVKRLEKKGLVERE   54 (62)
T ss_dssp             HHHHHHHHHHHSTTSGEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence            34556777777665  899999999999    999999999999999999974

...

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=95.76  E-value=0.029  Score=50.13  Aligned_cols=66  Identities=17%  Similarity=0.228  Sum_probs=55.4

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCC
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE  251 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~  251 (273)
                      .+++++.+. ..+...+||.=+|.|.++..++++.|+.+.+++|. |.+++.+++.     +|++++.++|-+
T Consensus         9 l~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~   80 (305)
T TIGR00006         9 LDEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN   80 (305)
T ss_pred             HHHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence            456677765 55667999999999999999999998889999998 8888877642     589999999975

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PRK10857 DNA-binding transcriptional regulator IscR; Provisional

Probab=95.70  E-value=0.023  Score=46.13  Aligned_cols=62  Identities=16%  Similarity=0.240  Sum_probs=46.2

Q ss_pred             HHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChh
Q 024046           39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV  108 (273)
Q Consensus        39 ~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~  108 (273)
                      .||.+.+.+. |  -...++.|+++||+.+++    ++..+.++|..|...|++.... +.+|.|.+..-
T Consensus         9 yAl~~l~~lA-~--~~~~~~vs~~eIA~~~~i----p~~~l~kIl~~L~~aGLv~s~r-G~~GGy~Lar~   70 (164)
T PRK10857          9 YAVTAMLDVA-L--NSEAGPVPLADISERQGI----SLSYLEQLFSRLRKNGLVSSVR-GPGGGYLLGKD   70 (164)
T ss_pred             HHHHHHHHHH-h--CCCCCcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeCC-CCCCCeeccCC
Confidence            4455555554 1  122248999999999999    9999999999999999999643 24566877653

>COG4742 Predicted transcriptional regulator [Transcription]

Probab=95.69  E-value=0.027  Score=48.87  Aligned_cols=68  Identities=13%  Similarity=0.212  Sum_probs=60.3

Q ss_pred             HHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhhcC
Q 024046           39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSN  115 (273)
Q Consensus        39 ~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~~~  115 (273)
                      ..+...-|.+|+=.|.+ ||+|.+||-..+++    ++..+..-++-|...|++.+    .++.|++|+.+..++..
T Consensus         8 ~if~SekRk~lLllL~e-gPkti~EI~~~l~v----s~~ai~pqiKkL~~~~LV~~----~~~~Y~LS~~G~iiv~k   75 (260)
T COG4742           8 LLFLSEKRKDLLLLLKE-GPKTIEEIKNELNV----SSSAILPQIKKLKDKGLVVQ----EGDRYSLSSLGKIIVEK   75 (260)
T ss_pred             HHHccHHHHHHHHHHHh-CCCCHHHHHHHhCC----CcHHHHHHHHHHhhCCCEEe----cCCEEEecchHHHHHHH
Confidence            34455678899999988 89999999999999    99999999999999999996    67999999999887754

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=95.69  E-value=0.024  Score=50.01  Aligned_cols=74  Identities=18%  Similarity=0.245  Sum_probs=51.3

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCe-EEEeec-hHHHHhCCCC----CCceE--EEcccCC---CCCCCCEEEecccc
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIK-AVNFDL-PHVVQDAPSY----AGVEH--VGGNMFE---SVPEGDAILMKVGN  265 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~-~~~~Dl-p~v~~~a~~~----~ri~~--~~gD~f~---~~p~~D~~~l~~vL  265 (273)
                      .+.+|||+|+|.|..+-++...+|++. .+.+|. +.+++.++..    +....  ...++..   +++..|+++++++|
T Consensus        33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~L  112 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYVL  112 (274)
T ss_pred             CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehhh
Confidence            467999999999999999999999654 688897 6666654431    11111  1222332   34455999999999


Q ss_pred             cccCC
Q 024046          266 FENYQ  270 (273)
Q Consensus       266 Hd~~~  270 (273)
                      -.-++
T Consensus       113 ~EL~~  117 (274)
T PF09243_consen  113 NELPS  117 (274)
T ss_pred             hcCCc
Confidence            87665

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=95.61  E-value=0.021  Score=50.59  Aligned_cols=75  Identities=16%  Similarity=0.088  Sum_probs=56.5

Q ss_pred             CcceEEEecCCccH----HHHHHHHHCC----CCeEEEeec-hHHHHhCCCC----------------------------
Q 024046          197 NVERLVDVGGGFGV----TLSMITSKYP----QIKAVNFDL-PHVVQDAPSY----------------------------  239 (273)
Q Consensus       197 ~~~~vvDVGGG~G~----~~~~l~~~~P----~l~~~~~Dl-p~v~~~a~~~----------------------------  239 (273)
                      +.-+|...||++|.    +++.+.+..|    +++.++-|+ +.+++.|+.-                            
T Consensus       115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~  194 (287)
T PRK10611        115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG  194 (287)
T ss_pred             CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence            34799999999998    5555666543    367899998 7777766420                            


Q ss_pred             ---------CCceEEEcccCC-CCC--CC-CEEEecccccccCCC
Q 024046          240 ---------AGVEHVGGNMFE-SVP--EG-DAILMKVGNFENYQS  271 (273)
Q Consensus       240 ---------~ri~~~~gD~f~-~~p--~~-D~~~l~~vLHd~~~~  271 (273)
                               .+|+|..+|.++ ++|  .. |+|+++|||.+++++
T Consensus       195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~  239 (287)
T PRK10611        195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKT  239 (287)
T ss_pred             eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHH
Confidence                     467999999998 454  33 999999999988764

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=95.60  E-value=0.0083  Score=49.24  Aligned_cols=63  Identities=19%  Similarity=0.288  Sum_probs=43.9

Q ss_pred             HHHHHhhcccCC--CcceEEEecCCccHHHHHHHHHC-CCCeEEEeechHHHHhCCCCCCceEEEcccCC
Q 024046          185 MERILEHYEGFQ--NVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFE  251 (273)
Q Consensus       185 ~~~il~~~~~~~--~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dlp~v~~~a~~~~ri~~~~gD~f~  251 (273)
                      ..++.+.++.++  +..++||+||+.|.++..++++. +..+++++|+...    ...+.+.++.||+++
T Consensus         9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----~~~~~~~~i~~d~~~   74 (181)
T PF01728_consen    9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----DPLQNVSFIQGDITN   74 (181)
T ss_dssp             HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----GS-TTEEBTTGGGEE
T ss_pred             HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc----ccccceeeeecccch
Confidence            345566665343  45899999999999999999998 7788999999544    122445555666654

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=95.60  E-value=0.012  Score=51.16  Aligned_cols=57  Identities=14%  Similarity=0.173  Sum_probs=47.4

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCC-------CCCceEEEcccCC
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFE  251 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gD~f~  251 (273)
                      ..++++||+||.+.|.-++.+++..| +.+.+-+|. |+..+.|+.       .++|+++.||..+
T Consensus        77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e  142 (247)
T PLN02589         77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP  142 (247)
T ss_pred             HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHH
Confidence            45789999999999999999999875 678899998 666666654       2899999999876

>PRK11050 manganese transport regulator MntR; Provisional

Probab=95.54  E-value=0.12  Score=41.32  Aligned_cols=58  Identities=26%  Similarity=0.355  Sum_probs=48.1

Q ss_pred             hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhh
Q 024046           49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV  113 (273)
Q Consensus        49 lfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~  113 (273)
                      |..++...++.+..+||+.+++    ++..+.++++-|...|++...   ....+.+|+.+..+.
T Consensus        42 I~~~l~~~~~~t~~eLA~~l~i----s~stVsr~l~~Le~~GlI~r~---~~~~v~LT~~G~~l~   99 (152)
T PRK11050         42 IADLIAEVGEARQVDIAARLGV----SQPTVAKMLKRLARDGLVEMR---PYRGVFLTPEGEKLA   99 (152)
T ss_pred             HHHHHHhcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe---cCCceEECchHHHHH
Confidence            5567766568999999999999    999999999999999999863   335678888776654

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=95.54  E-value=0.019  Score=48.74  Aligned_cols=67  Identities=12%  Similarity=0.254  Sum_probs=54.2

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCCC-------CCceEEE-cccCC---CC-CC-CCEE
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVG-GNMFE---SV-PE-GDAI  259 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~-gD~f~---~~-p~-~D~~  259 (273)
                      ..++++||+||.+.|..++.++..-| +.+.+-+|. |+.++.|+.+       ++|+++. ||-.+   .. .+ -|++
T Consensus        57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli  136 (219)
T COG4122          57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV  136 (219)
T ss_pred             hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence            66899999999999999999999999 788899998 8888877653       7898888 57765   21 12 2887


Q ss_pred             Ee
Q 024046          260 LM  261 (273)
Q Consensus       260 ~l  261 (273)
                      |+
T Consensus       137 FI  138 (219)
T COG4122         137 FI  138 (219)
T ss_pred             EE
Confidence            76

>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors

Probab=95.49  E-value=0.036  Score=37.72  Aligned_cols=57  Identities=21%  Similarity=0.384  Sum_probs=44.8

Q ss_pred             HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecCh
Q 024046           46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP  107 (273)
Q Consensus        46 elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~  107 (273)
                      +..|+..+... +.+..||++.+++    +...+.+.|+.|...|++..........|.+|+
T Consensus         9 ~~~il~~l~~~-~~~~~ei~~~~~i----~~~~i~~~l~~L~~~g~i~~~~~~~~~~~~~~~   65 (78)
T cd00090           9 RLRILRLLLEG-PLTVSELAERLGL----SQSTVSRHLKKLEEAGLVESRREGRRVYYSLTD   65 (78)
T ss_pred             HHHHHHHHHHC-CcCHHHHHHHHCc----CHhHHHHHHHHHHHCCCeEEEEeccEEEEEeCC
Confidence            44567777774 5999999999999    999999999999999999964222235677775

ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.

>COG4190 Predicted transcriptional regulator [Transcription]

Probab=95.48  E-value=0.024  Score=43.69  Aligned_cols=58  Identities=17%  Similarity=0.114  Sum_probs=50.7

Q ss_pred             hhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           34 GVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        34 g~~~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      .|-..+.+-+--.+.|++.|+..+|.|+.|+|+.+|.    +...+.|-|+.|...|++...
T Consensus        54 Sye~la~vLsp~nleLl~~Ia~~~P~Si~ElAe~vgR----dv~nvhr~Ls~l~~~GlI~fe  111 (144)
T COG4190          54 SYEDLARVLSPRNLELLELIAQEEPASINELAELVGR----DVKNVHRTLSTLADLGLIFFE  111 (144)
T ss_pred             cHHHHHHHhChhHHHHHHHHHhcCcccHHHHHHHhCc----chHHHHHHHHHHHhcCeEEEe
Confidence            4445555666778889999999889999999999999    999999999999999999863

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=95.46  E-value=0.03  Score=46.38  Aligned_cols=65  Identities=17%  Similarity=0.311  Sum_probs=46.6

Q ss_pred             eEEEecCCccHHHHHHHHHCCCCeEEEeec-hH---HHHhCCC---CCCceEEEcccCC-CCCCC-CEEEeccc
Q 024046          200 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PH---VVQDAPS---YAGVEHVGGNMFE-SVPEG-DAILMKVG  264 (273)
Q Consensus       200 ~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~---v~~~a~~---~~ri~~~~gD~f~-~~p~~-D~~~l~~v  264 (273)
                      +++|||.|.|.=++.|+=.+|+++++++|- ..   .++.+..   .++++++.+..-+ ..+.. |+++.+-+
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv  124 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAV  124 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESS
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehh
Confidence            899999999999999999999999999997 22   2222221   3778888888877 23333 88887654

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>COG4189 Predicted transcriptional regulator [Transcription]

Probab=95.46  E-value=0.028  Score=47.63  Aligned_cols=55  Identities=15%  Similarity=0.324  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           37 LPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        37 ~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      ...||...++..|++.|++.||+.+.|||+++|+    +..-+..-+..|...|+++..
T Consensus        16 v~kalaS~vRv~Il~lL~~k~plNvneiAe~lgL----pqst~s~~ik~Le~aGlirT~   70 (308)
T COG4189          16 VLKALASKVRVAILQLLHRKGPLNVNEIAEALGL----PQSTMSANIKVLEKAGLIRTE   70 (308)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhCC----chhhhhhhHHHHHhcCceeee
Confidence            4568888999999999999999999999999999    999999999999999999853

>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure

Probab=95.45  E-value=0.028  Score=40.79  Aligned_cols=61  Identities=20%  Similarity=0.270  Sum_probs=47.7

Q ss_pred             ChhHHHHhCCCCCHHHHHHHh-CcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           48 GVFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        48 glfd~L~~~g~~t~~eLA~~~-g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      -|+..|.. |+....||.+.+ |+    ++..|.+-|+-|...|++++......   -.|++|+.+..|.
T Consensus         9 ~IL~~l~~-g~~rf~el~~~l~~i----s~~~L~~~L~~L~~~GLv~r~~~~~~p~~v~Y~LT~~G~~l~   73 (90)
T PF01638_consen    9 LILRALFQ-GPMRFSELQRRLPGI----SPKVLSQRLKELEEAGLVERRVYPEVPPRVEYSLTEKGKELL   73 (90)
T ss_dssp             HHHHHHTT-SSEEHHHHHHHSTTS-----HHHHHHHHHHHHHTTSEEEEEESSSSSEEEEEE-HHHHHHH
T ss_pred             HHHHHHHh-CCCcHHHHHHhcchh----HHHHHHHHHHHHHHcchhhcccccCCCCCCccCCCcCHHHHH
Confidence            35667777 899999999999 89    99999999999999999987432111   2599999998765

The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.

>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance

Probab=95.43  E-value=0.015  Score=38.35  Aligned_cols=47  Identities=19%  Similarity=0.386  Sum_probs=40.5

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      .++.++..|.+.|+.|..+||+.+++    +...+.++++-|...|++++.
T Consensus         4 ~q~~iL~~l~~~~~~~~~~la~~~~~----~~~~~t~~i~~L~~~g~I~r~   50 (59)
T PF01047_consen    4 SQFRILRILYENGGITQSELAEKLGI----SRSTVTRIIKRLEKKGLIERE   50 (59)
T ss_dssp             HHHHHHHHHHHHSSEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEec
Confidence            34556677777789999999999999    999999999999999999974

This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....

>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR

Probab=95.42  E-value=0.036  Score=43.46  Aligned_cols=47  Identities=15%  Similarity=0.230  Sum_probs=39.6

Q ss_pred             CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChh
Q 024046           57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV  108 (273)
Q Consensus        57 g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~  108 (273)
                      ++.|.++||+.+++    ++..++++|..|...|++.... +..|.|.++..
T Consensus        24 ~~~s~~~ia~~~~i----p~~~l~kil~~L~~~glv~s~~-G~~Ggy~l~~~   70 (135)
T TIGR02010        24 GPVTLADISERQGI----SLSYLEQLFAKLRKAGLVKSVR-GPGGGYQLGRP   70 (135)
T ss_pred             CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEe-CCCCCEeccCC
Confidence            38999999999999    9999999999999999998643 24456877653

This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.

>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein

Probab=95.40  E-value=0.03  Score=47.04  Aligned_cols=60  Identities=27%  Similarity=0.351  Sum_probs=49.5

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhc
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS  109 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s  109 (273)
                      .+..++..|.+.|+.+..+||+.+++    ++..+.+.|..|...|++++... +...|.+|+.+
T Consensus       144 ~~~~IL~~l~~~g~~s~~eia~~l~i----s~stv~r~L~~Le~~GlI~r~~~-r~~~~~lT~~G  203 (203)
T TIGR01884       144 EELKVLEVLKAEGEKSVKNIAKKLGK----SLSTISRHLRELEKKGLVEQKGR-KGKRYSLTKLG  203 (203)
T ss_pred             HHHHHHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEcC-CccEEEeCCCC
Confidence            45567788877678999999999999    99999999999999999998521 44678888753

Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=95.34  E-value=0.048  Score=44.20  Aligned_cols=86  Identities=19%  Similarity=0.327  Sum_probs=62.9

Q ss_pred             HHhcchhhHHHHHhhcccCCCcceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhCCC-CCCceEEEcccCC--
Q 024046          177 MFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFE--  251 (273)
Q Consensus       177 m~~~~~~~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~~~Dl-p~v~~~a~~-~~ri~~~~gD~f~--  251 (273)
                      ....+++.++.++...+ ++...-|+++|.|+|.+..+++++ .++-..+..+- |+......+ .+.++++.||.|.  
T Consensus        29 I~PsSs~lA~~M~s~I~-pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~  107 (194)
T COG3963          29 ILPSSSILARKMASVID-PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLR  107 (194)
T ss_pred             ecCCcHHHHHHHHhccC-cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHH
Confidence            34455566777778787 888889999999999999999887 45556677765 776655544 4888999999987  


Q ss_pred             ----CCCC--CCEEEecc
Q 024046          252 ----SVPE--GDAILMKV  263 (273)
Q Consensus       252 ----~~p~--~D~~~l~~  263 (273)
                          +++.  -|+++..-
T Consensus       108 ~~l~e~~gq~~D~viS~l  125 (194)
T COG3963         108 TTLGEHKGQFFDSVISGL  125 (194)
T ss_pred             HHHhhcCCCeeeeEEecc
Confidence                2232  28877653

>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism

Probab=95.32  E-value=0.037  Score=36.58  Aligned_cols=44  Identities=20%  Similarity=0.416  Sum_probs=40.6

Q ss_pred             ChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           48 GVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        48 glfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      .|.+.|.+.|..|++|||+.+|+    ++.-++|=|..|...|++.+.
T Consensus         4 ~Il~~l~~~~~~s~~ela~~~~V----S~~TiRRDl~~L~~~g~i~r~   47 (57)
T PF08220_consen    4 QILELLKEKGKVSVKELAEEFGV----SEMTIRRDLNKLEKQGLIKRT   47 (57)
T ss_pred             HHHHHHHHcCCEEHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence            46788888889999999999999    999999999999999999873

This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular

>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor

Probab=95.26  E-value=0.046  Score=34.71  Aligned_cols=43  Identities=28%  Similarity=0.431  Sum_probs=38.2

Q ss_pred             hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        49 lfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      +++.|.+.++.++.+|++.+++    ++..+.+.|..|...|++...
T Consensus         5 il~~l~~~~~~s~~~l~~~l~~----s~~tv~~~l~~L~~~g~i~~~   47 (53)
T smart00420        5 ILELLAQQGKVSVEELAELLGV----SEMTIRRDLNKLEEQGLLTRV   47 (53)
T ss_pred             HHHHHHHcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence            5666666678999999999999    999999999999999999863

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=95.19  E-value=0.088  Score=45.67  Aligned_cols=75  Identities=16%  Similarity=0.266  Sum_probs=52.5

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCC-CC-
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES-VP-  254 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~-~p-  254 (273)
                      ..|+..++ ..+..+||+.|.|+|.++..|++. .|+-+..-+|. ++-.+.|+++       ++|++..+|.-++ ++ 
T Consensus        30 ~~I~~~l~-i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~  108 (247)
T PF08704_consen   30 SYILMRLD-IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE  108 (247)
T ss_dssp             HHHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST
T ss_pred             HHHHHHcC-CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc
Confidence            44666666 888899999999999999999975 68888999997 6666666542       6899999999752 43 


Q ss_pred             ---CC-CEEEe
Q 024046          255 ---EG-DAILM  261 (273)
Q Consensus       255 ---~~-D~~~l  261 (273)
                         .. |+++|
T Consensus       109 ~~~~~~DavfL  119 (247)
T PF08704_consen  109 ELESDFDAVFL  119 (247)
T ss_dssp             T-TTSEEEEEE
T ss_pred             cccCcccEEEE
Confidence               22 88886

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=95.04  E-value=0.067  Score=44.06  Aligned_cols=45  Identities=24%  Similarity=0.331  Sum_probs=41.3

Q ss_pred             HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        46 elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      ...|+++|...|++|.++||+.+|+    +...++++|..|...|++..
T Consensus        24 ~~~Vl~~L~~~g~~tdeeLA~~Lgi----~~~~VRk~L~~L~e~gLv~~   68 (178)
T PRK06266         24 GFEVLKALIKKGEVTDEEIAEQTGI----KLNTVRKILYKLYDARLADY   68 (178)
T ss_pred             HhHHHHHHHHcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEE
Confidence            3448899988889999999999999    99999999999999999984

>PRK11512 DNA-binding transcriptional repressor MarR; Provisional

Probab=95.04  E-value=0.058  Score=42.60  Aligned_cols=65  Identities=23%  Similarity=0.166  Sum_probs=50.1

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      .+..++-.|...++.|..+||+.+++    ++..+.++++-|...|++++.....+   -...+|+.+..+.
T Consensus        41 ~q~~vL~~l~~~~~~t~~eLa~~l~i----~~~tvsr~l~~Le~~GlI~R~~~~~DrR~~~l~LT~~G~~~~  108 (144)
T PRK11512         41 AQFKVLCSIRCAACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTSGAAIC  108 (144)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCcccCCeeEeEEChhHHHHH
Confidence            34456777776678999999999999    99999999999999999997422122   2467788776554

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=95.00  E-value=0.072  Score=53.23  Aligned_cols=78  Identities=19%  Similarity=0.178  Sum_probs=55.6

Q ss_pred             hHHHHHhhcccC-CCcceEEEecCCccHHHHHHHHH------------C------------------------------C
Q 024046          184 AMERILEHYEGF-QNVERLVDVGGGFGVTLSMITSK------------Y------------------------------P  220 (273)
Q Consensus       184 ~~~~il~~~~~~-~~~~~vvDVGGG~G~~~~~l~~~------------~------------------------------P  220 (273)
                      .+..++.... | .+...++|-.||+|.++++.+..            |                              +
T Consensus       177 lAaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~  255 (702)
T PRK11783        177 LAAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAEL  255 (702)
T ss_pred             HHHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccccc
Confidence            3445555544 7 45689999999999999988763            1                              1


Q ss_pred             CCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC-CCC--C--CCEEEec
Q 024046          221 QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVP--E--GDAILMK  262 (273)
Q Consensus       221 ~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~p--~--~D~~~l~  262 (273)
                      ..+++++|+ |.+++.|+.+       ++|++..+|+++ +.|  .  .|+++..
T Consensus       256 ~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtN  310 (702)
T PRK11783        256 PSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISN  310 (702)
T ss_pred             CceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEEC
Confidence            236899998 8888877653       679999999987 333  1  2776653

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=95.00  E-value=0.11  Score=45.52  Aligned_cols=76  Identities=21%  Similarity=0.340  Sum_probs=45.9

Q ss_pred             CcceEEEecCCccH--HHH-HHHHHCCCCeEEEeec-hHHHHhCCC----CCC--ceEEEcccCCC-----CCC--C--C
Q 024046          197 NVERLVDVGGGFGV--TLS-MITSKYPQIKAVNFDL-PHVVQDAPS----YAG--VEHVGGNMFES-----VPE--G--D  257 (273)
Q Consensus       197 ~~~~vvDVGGG~G~--~~~-~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~r--i~~~~gD~f~~-----~p~--~--D  257 (273)
                      +...+||||||.=.  ..- ...+..|+.+++=+|. |-|+..++.    .++  ..++.+|+..|     -|+  +  |
T Consensus        68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD  147 (267)
T PF04672_consen   68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD  147 (267)
T ss_dssp             ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred             CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence            88999999999643  233 3355699999999998 888887764    244  89999999983     232  2  4


Q ss_pred             -----EEEecccccccCCCC
Q 024046          258 -----AILMKVGNFENYQSH  272 (273)
Q Consensus       258 -----~~~l~~vLHd~~~~~  272 (273)
                           +++|..|||..+|++
T Consensus       148 ~~rPVavll~~vLh~v~D~~  167 (267)
T PF04672_consen  148 FDRPVAVLLVAVLHFVPDDD  167 (267)
T ss_dssp             TTS--EEEECT-GGGS-CGC
T ss_pred             CCCCeeeeeeeeeccCCCcc
Confidence                 799999999999853

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=94.98  E-value=0.04  Score=46.55  Aligned_cols=66  Identities=18%  Similarity=0.264  Sum_probs=52.8

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcccCCCCC-C-C-CEEEec
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFESVP-E-G-DAILMK  262 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gD~f~~~p-~-~-D~~~l~  262 (273)
                      ....+.||||-+|.+.+.|.+.+|..+++.-|. |...+.|..       .+||++-.||-|.++- . . |++++.
T Consensus        16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIA   92 (226)
T COG2384          16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIA   92 (226)
T ss_pred             cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEe
Confidence            334599999999999999999999999999997 555554432       2899999999998754 3 2 777765

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=94.98  E-value=0.068  Score=45.33  Aligned_cols=66  Identities=20%  Similarity=0.338  Sum_probs=48.3

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCeEEEeec-h---HHHHhCCC---CCCceEEEcccCC--CCCC-CCEEEecc
Q 024046          198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-P---HVVQDAPS---YAGVEHVGGNMFE--SVPE-GDAILMKV  263 (273)
Q Consensus       198 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p---~v~~~a~~---~~ri~~~~gD~f~--~~p~-~D~~~l~~  263 (273)
                      ..+++|||.|.|.=++-++=.+|+++++++|. .   .-++.+..   .++++++.+..-+  +.+. .|+++.+-
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRA  143 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRA  143 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeeh
Confidence            68999999999999999999999999999996 2   12222221   3678887777654  2334 68777654

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=94.98  E-value=0.09  Score=45.60  Aligned_cols=94  Identities=17%  Similarity=0.229  Sum_probs=57.9

Q ss_pred             chhhhhhcCcchHHHHHHHHHh----cchhhHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHH
Q 024046          158 HIFEYASGNPRFNETYHEAMFN----HSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVV  233 (273)
Q Consensus       158 ~~~~~~~~~~~~~~~f~~am~~----~~~~~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~  233 (273)
                      ..+..+..||...+.|+...+.    +-....+.|++.+..-++...|-|+|||.+.++.    .-+ -++.-|||-.+ 
T Consensus       137 ~A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~----~~~-~kV~SfDL~a~-  210 (325)
T KOG3045|consen  137 EAFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS----SER-HKVHSFDLVAV-  210 (325)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhh----ccc-cceeeeeeecC-
Confidence            3455566777765555554432    2222345666666545577899999999998876    222 24678888221 


Q ss_pred             HhCCCCCCceEEEcccCC-CCCCC--CEEEeccc
Q 024046          234 QDAPSYAGVEHVGGNMFE-SVPEG--DAILMKVG  264 (273)
Q Consensus       234 ~~a~~~~ri~~~~gD~f~-~~p~~--D~~~l~~v  264 (273)
                             +-.+++.|+-+ |++..  |+++++-.
T Consensus       211 -------~~~V~~cDm~~vPl~d~svDvaV~CLS  237 (325)
T KOG3045|consen  211 -------NERVIACDMRNVPLEDESVDVAVFCLS  237 (325)
T ss_pred             -------CCceeeccccCCcCccCcccEEEeeHh
Confidence                   22567889988 66643  87665543

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=94.96  E-value=0.039  Score=46.33  Aligned_cols=68  Identities=24%  Similarity=0.286  Sum_probs=48.3

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcccCCCCCC--CCEEEec
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFESVPE--GDAILMK  262 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gD~f~~~p~--~D~~~l~  262 (273)
                      ..+..+|+|.-||.|.+++.+++..+..+++..|+ |..++..++       .++|..+.+|..+-.+.  .|-++|.
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~  176 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMN  176 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE-
T ss_pred             CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEEC
Confidence            45678999999999999999999888888999999 787765543       27899999999873333  3877664

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=94.93  E-value=0.029  Score=51.81  Aligned_cols=64  Identities=13%  Similarity=0.024  Sum_probs=49.5

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCCCC---CCCEEEe
Q 024046          198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP---EGDAILM  261 (273)
Q Consensus       198 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~p---~~D~~~l  261 (273)
                      ..+|+|++||+|.+++.++++.+-.++++.|. |..++.++.+      +.+++..+|...-++   ..|+|++
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~l  131 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDI  131 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEE
Confidence            46899999999999999999988667999998 8888776542      456788888765222   2488776

>COG3355 Predicted transcriptional regulator [Transcription]

Probab=94.92  E-value=0.045  Score=42.21  Aligned_cols=47  Identities=21%  Similarity=0.360  Sum_probs=40.5

Q ss_pred             HHhChhHHHH-hCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           45 IQLGVFEIIA-KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        45 ~elglfd~L~-~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      .+..++-+|- ..||.|+++||+.++.    +...+.|-|.-|...|++.+.
T Consensus        28 ~Dv~v~~~LL~~~~~~tvdelae~lnr----~rStv~rsl~~L~~~GlV~Re   75 (126)
T COG3355          28 LDVEVYKALLEENGPLTVDELAEILNR----SRSTVYRSLQNLLEAGLVERE   75 (126)
T ss_pred             HHHHHHHHHHhhcCCcCHHHHHHHHCc----cHHHHHHHHHHHHHcCCeeee
Confidence            3455666666 4689999999999999    999999999999999999974

>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]

Probab=94.88  E-value=0.069  Score=42.90  Aligned_cols=57  Identities=19%  Similarity=0.257  Sum_probs=48.5

Q ss_pred             hHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhh
Q 024046           50 FEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV  113 (273)
Q Consensus        50 fd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~  113 (273)
                      ++.+...|+.+..+||+.+++    +++.+..+++-|...|+++..   ..+.+.+|+.+....
T Consensus        16 y~l~~~~~~~~~~diA~~L~V----sp~sVt~ml~rL~~~GlV~~~---~y~gi~LT~~G~~~a   72 (154)
T COG1321          16 YELLEEKGFARTKDIAERLKV----SPPSVTEMLKRLERLGLVEYE---PYGGVTLTEKGREKA   72 (154)
T ss_pred             HHHHhccCcccHHHHHHHhCC----CcHHHHHHHHHHHHCCCeEEe---cCCCeEEChhhHHHH
Confidence            334445579999999999999    999999999999999999983   567899999887654

>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator)

Probab=94.87  E-value=0.07  Score=41.34  Aligned_cols=48  Identities=27%  Similarity=0.330  Sum_probs=39.4

Q ss_pred             CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhc
Q 024046           57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS  109 (273)
Q Consensus        57 g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s  109 (273)
                      ++.|.++||+.+++    ++..++++|+.|...|++.... +..|.|.++...
T Consensus        24 ~~~s~~eia~~~~i----~~~~v~~il~~L~~~gli~~~~-g~~ggy~l~~~~   71 (132)
T TIGR00738        24 GPVSVKEIAERQGI----SRSYLEKILRTLRRAGLVESVR-GPGGGYRLARPP   71 (132)
T ss_pred             CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEecc-CCCCCccCCCCH
Confidence            38999999999999    9999999999999999998632 134567776543

This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.87  E-value=0.047  Score=45.82  Aligned_cols=69  Identities=20%  Similarity=0.220  Sum_probs=50.5

Q ss_pred             cCCCcceEEEecCCccHHHHHHHHHCC--CCeEEEeec-hHHHHhCCCC----------------CCceEEEcccCCCCC
Q 024046          194 GFQNVERLVDVGGGFGVTLSMITSKYP--QIKAVNFDL-PHVVQDAPSY----------------AGVEHVGGNMFESVP  254 (273)
Q Consensus       194 ~~~~~~~vvDVGGG~G~~~~~l~~~~P--~l~~~~~Dl-p~v~~~a~~~----------------~ri~~~~gD~f~~~p  254 (273)
                      .+.+..++||||+|+|-+...++..--  ....+++|+ |++++.+.++                .+++++.||-..-.+
T Consensus        79 ~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~  158 (237)
T KOG1661|consen   79 HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA  158 (237)
T ss_pred             hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC
Confidence            367789999999999998887775532  222378887 9988866531                678999999988444


Q ss_pred             C-C--CEEEec
Q 024046          255 E-G--DAILMK  262 (273)
Q Consensus       255 ~-~--D~~~l~  262 (273)
                      + +  |.|++.
T Consensus       159 e~a~YDaIhvG  169 (237)
T KOG1661|consen  159 EQAPYDAIHVG  169 (237)
T ss_pred             ccCCcceEEEc
Confidence            3 3  877764

>smart00344 HTH_ASNC helix_turn_helix ASNC type

Probab=94.82  E-value=0.049  Score=40.63  Aligned_cols=46  Identities=20%  Similarity=0.324  Sum_probs=42.3

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      .+..|+.+|...++.|..+||+.+|+    ++..+.+.++.|...|++..
T Consensus         4 ~D~~il~~L~~~~~~~~~~la~~l~~----s~~tv~~~l~~L~~~g~i~~   49 (108)
T smart00344        4 IDRKILEELQKDARISLAELAKKVGL----SPSTVHNRVKRLEEEGVIKG   49 (108)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeec
Confidence            46778899988789999999999999    99999999999999999984

AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli

>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family

Probab=94.80  E-value=0.084  Score=39.69  Aligned_cols=67  Identities=15%  Similarity=0.227  Sum_probs=50.6

Q ss_pred             HHHHhChhHHHH----hCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCc---ceecChhchHhh
Q 024046           43 AAIQLGVFEIIA----KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV  113 (273)
Q Consensus        43 ~a~elglfd~L~----~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~---~y~lt~~s~~l~  113 (273)
                      +..+..++..|.    ..|+.|..+||+.+++    ++..+.++++-|...|++.+.....+.   .+.+|+.+..+.
T Consensus        24 s~~q~~vL~~l~~~~~~~~~~t~~eL~~~l~~----~~stvs~~i~~Le~kg~I~r~~~~~D~R~~~i~lT~~G~~~~   97 (109)
T TIGR01889        24 SLEELLILYYLGKLENNEGKLTLKEIIKEILI----KQSALVKIIKKLSKKGYLSKERSEDDERKVIISINKEQRSKI   97 (109)
T ss_pred             CHHHHHHHHHHHhhhccCCcCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeccCCcccCCeEEEEECHHHHHHH
Confidence            344555666666    4468999999999999    999999999999999999974322222   466788776544

This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=94.60  E-value=0.031  Score=52.67  Aligned_cols=74  Identities=18%  Similarity=0.099  Sum_probs=48.3

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEe-ec-hHHHHhCCCCCCceEEEccc---CCCCCCC--CEEEecccccccC
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNF-DL-PHVVQDAPSYAGVEHVGGNM---FESVPEG--DAILMKVGNFENY  269 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~-Dl-p~v~~~a~~~~ri~~~~gD~---f~~~p~~--D~~~l~~vLHd~~  269 (273)
                      ..+++||||||.|.|+..+++++=-+=.+.. |- +..++.|.+. +|-.+-+-+   .-|+|..  |++.+++++..|.
T Consensus       117 ~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleR-Gvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~  195 (506)
T PF03141_consen  117 GIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALER-GVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWH  195 (506)
T ss_pred             ceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhc-CcchhhhhhccccccCCccchhhhhcccccccch
Confidence            5688999999999999999999532211222 22 3344444432 132232333   2388864  9999999999998


Q ss_pred             CC
Q 024046          270 QS  271 (273)
Q Consensus       270 ~~  271 (273)
                      +.
T Consensus       196 ~~  197 (506)
T PF03141_consen  196 PN  197 (506)
T ss_pred             hc
Confidence            75

; GO: 0008168 methyltransferase activity

>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial

Probab=94.60  E-value=0.055  Score=41.97  Aligned_cols=46  Identities=26%  Similarity=0.270  Sum_probs=37.4

Q ss_pred             CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecCh
Q 024046           57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP  107 (273)
Q Consensus        57 g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~  107 (273)
                      ++.|+.|||+.+++    ++..+.++|+.|...|++.... +..+.|.+..
T Consensus        24 ~~~s~~eia~~l~i----s~~~v~~~l~~L~~~Gli~~~~-g~~ggy~l~~   69 (130)
T TIGR02944        24 QPYSAAEIAEQTGL----NAPTVSKILKQLSLAGIVTSKR-GVEGGYTLAR   69 (130)
T ss_pred             CCccHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEecC-CCCCChhhcC
Confidence            48999999999999    9999999999999999998532 1235565543

The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.

>KOG2730 consensus Methylase [General function prediction only]

Probab=94.45  E-value=0.033  Score=47.09  Aligned_cols=53  Identities=21%  Similarity=0.324  Sum_probs=46.1

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE  251 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~  251 (273)
                      ....|||.-||-|...++++.++|.  ++.+|. |.-|..|+.+       +||+|+.||++.
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~~~--VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld  154 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQGPY--VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD  154 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhCCe--EEEEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence            6678999999999999999999997  678888 7768777653       899999999986

>PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length

Probab=94.44  E-value=0.1  Score=37.86  Aligned_cols=67  Identities=22%  Similarity=0.227  Sum_probs=51.8

Q ss_pred             HHHHhChhHHHHhC-C-CCCHHHHHHHhCcCCCCCcchHHHHHHH----------HhcCCce-eccccCCCcceecChhc
Q 024046           43 AAIQLGVFEIIAKA-G-ELSAPEIAAQLQAQNVKAPMMLDRMLRL----------LVSHRVL-ECSVSGGERLYALNPVS  109 (273)
Q Consensus        43 ~a~elglfd~L~~~-g-~~t~~eLA~~~g~~~~~~~~~l~rlL~~----------L~~~gll-~~~~~~~~~~y~lt~~s  109 (273)
                      .=++..|+..|... + +.++.|||..++.    ++..+...|+-          |+.+|++ ++....+...|++|+.+
T Consensus         8 S~~R~~vl~~L~~~yp~~~~~~eIar~v~~----~~snV~GaL~G~g~rY~~e~SLv~lGLV~~~~~~~g~k~Y~lT~~G   83 (90)
T PF07381_consen    8 SKVRKKVLEYLCSIYPEPAYPSEIARSVGS----DYSNVLGALRGDGKRYNKEDSLVGLGLVEEEEEKGGFKYYRLTEKG   83 (90)
T ss_pred             HHHHHHHHHHHHHcCCCcCCHHHHHHHHCC----CHHHHHHHHhcCCCCcCcchhHHHcCCeeEeeecCCeeEEEeChhh
Confidence            45778889999886 3 8999999999999    99988888765          8899999 43321233579999988


Q ss_pred             hHhh
Q 024046          110 KYFV  113 (273)
Q Consensus       110 ~~l~  113 (273)
                      ..++
T Consensus        84 ~~~~   87 (90)
T PF07381_consen   84 KRIA   87 (90)
T ss_pred             hhHH
Confidence            6553

The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator.

>TIGR00122 birA_repr_reg BirA biotin operon repressor domain

Probab=94.44  E-value=0.081  Score=36.20  Aligned_cols=54  Identities=17%  Similarity=0.268  Sum_probs=43.3

Q ss_pred             HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecCh
Q 024046           46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP  107 (273)
Q Consensus        46 elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~  107 (273)
                      ++.++..|.+ ++.+..+||+.+|+    +...+.+.++.|...|+....   ....|.+.+
T Consensus         2 ~~~il~~L~~-~~~~~~eLa~~l~v----S~~tv~~~l~~L~~~g~~i~~---~~~g~~l~~   55 (69)
T TIGR00122         2 PLRLLALLAD-NPFSGEKLGEALGM----SRTAVNKHIQTLREWGVDVLT---VGKGYRLPP   55 (69)
T ss_pred             hHHHHHHHHc-CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe---cCCceEecC
Confidence            3567788886 68999999999999    999999999999999996542   234565544

This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.

>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed

Probab=94.44  E-value=0.11  Score=41.57  Aligned_cols=61  Identities=18%  Similarity=0.155  Sum_probs=46.4

Q ss_pred             HHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChh
Q 024046           39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV  108 (273)
Q Consensus        39 ~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~  108 (273)
                      .|+++.+.|-.    ...++.|.++||+..++    ++..|+++|..|...|+++-..+ ..|.|+++..
T Consensus         9 YAlr~L~~LA~----~~~~~~s~~eIA~~~~i----s~~~L~kIl~~L~~aGlv~S~rG-~~GGy~La~~   69 (153)
T PRK11920          9 YAIRMLMYCAA----NDGKLSRIPEIARAYGV----SELFLFKILQPLVEAGLVETVRG-RNGGVRLGRP   69 (153)
T ss_pred             HHHHHHHHHHh----CCCCcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeecC-CCCCeeecCC
Confidence            45555554432    12237899999999999    99999999999999999997653 4567888654

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=94.34  E-value=0.081  Score=43.71  Aligned_cols=61  Identities=16%  Similarity=0.304  Sum_probs=48.5

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCC-CCCCCCEEEe
Q 024046          199 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEGDAILM  261 (273)
Q Consensus       199 ~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~~p~~D~~~l  261 (273)
                      .++.|+|.|+|.++.-.+++  --+++.+++ |.....|.++      .+++++.||..+ ++..+|++++
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvic  102 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVIC  102 (252)
T ss_pred             hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHH
Confidence            57899999999998877776  346888887 7777777653      789999999998 6756688765

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=94.33  E-value=0.11  Score=42.78  Aligned_cols=65  Identities=20%  Similarity=0.394  Sum_probs=48.5

Q ss_pred             cceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhCCC----C-CCceEEEcccCCCCC-CC-CEEEec
Q 024046          198 VERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS----Y-AGVEHVGGNMFESVP-EG-DAILMK  262 (273)
Q Consensus       198 ~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~----~-~ri~~~~gD~f~~~p-~~-D~~~l~  262 (273)
                      ...+++||||+|..+..|.+.. |+.....-|+ |..++...+    + -++..+..|++..+- +. |+.+++
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfN  117 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFN  117 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEEC
Confidence            7889999999999888877764 6677788898 777665332    2 457889999998543 34 887765

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=94.31  E-value=0.067  Score=43.19  Aligned_cols=44  Identities=18%  Similarity=0.138  Sum_probs=40.2

Q ss_pred             hChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        47 lglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      ..|+++|...|.+|-+|||+.+|+    +...++++|..|...|++..
T Consensus        17 v~Vl~aL~~~~~~tdEeLa~~Lgi----~~~~VRk~L~~L~e~~Lv~~   60 (158)
T TIGR00373        17 GLVLFSLGIKGEFTDEEISLELGI----KLNEVRKALYALYDAGLADY   60 (158)
T ss_pred             HHHHHHHhccCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCcee
Confidence            457888887789999999999999    99999999999999999964

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>COG1959 Predicted transcriptional regulator [Transcription]

Probab=94.28  E-value=0.069  Score=42.73  Aligned_cols=47  Identities=21%  Similarity=0.268  Sum_probs=40.8

Q ss_pred             CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhc
Q 024046           58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS  109 (273)
Q Consensus        58 ~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s  109 (273)
                      +.|+++||+..++    ++..|.++|..|...|+++-..+ ..|.|++..-.
T Consensus        25 ~~s~~~IA~~~~i----s~~~L~kil~~L~kaGlV~S~rG-~~GGy~Lar~~   71 (150)
T COG1959          25 PVSSAEIAERQGI----SPSYLEKILSKLRKAGLVKSVRG-KGGGYRLARPP   71 (150)
T ss_pred             cccHHHHHHHhCc----CHHHHHHHHHHHHHcCCEEeecC-CCCCccCCCCh
Confidence            7899999999999    99999999999999999997642 45778887644

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=94.20  E-value=0.12  Score=45.69  Aligned_cols=66  Identities=21%  Similarity=0.247  Sum_probs=56.7

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCe-EEEeec-hHHHHhCCCC-----CCceEEEcccCC
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIK-AVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE  251 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~-~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~  251 (273)
                      ..++++.+. ..+....||.-=|.|.++..+++++|+.. .+++|. |++++.|++.     +|++++.++|-.
T Consensus        12 l~E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~   84 (314)
T COG0275          12 LNEVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN   84 (314)
T ss_pred             HHHHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence            456677776 56679999999999999999999999877 899998 9999988763     799999999865

>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function

Probab=94.18  E-value=0.15  Score=37.15  Aligned_cols=47  Identities=26%  Similarity=0.265  Sum_probs=43.3

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      ..+.|+..|...||-.+.-+|..+++    +...+...++-|..+|++++.
T Consensus         8 l~~~IL~hl~~~~~Dy~k~ia~~l~~----~~~~v~~~l~~Le~~GLler~   54 (92)
T PF10007_consen    8 LDLKILQHLKKAGPDYAKSIARRLKI----PLEEVREALEKLEEMGLLERV   54 (92)
T ss_pred             hHHHHHHHHHHHCCCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence            45678889988899999999999999    999999999999999999985

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=94.17  E-value=0.13  Score=46.52  Aligned_cols=72  Identities=15%  Similarity=0.207  Sum_probs=50.2

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------------C----CceEEEcccCCC-----CC
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------------A----GVEHVGGNMFES-----VP  254 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------------~----ri~~~~gD~f~~-----~p  254 (273)
                      +..+|||+|||.|.-+....+..+. ..+++|+ ++.++.|+.+            .    ...++.+|-|..     ++
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~-~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~  140 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIK-HYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP  140 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-S-EEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCC-EEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence            6789999999999999999888554 4799999 5567666531            1    246788888861     22


Q ss_pred             -C--C-CEEEecccccccC
Q 024046          255 -E--G-DAILMKVGNFENY  269 (273)
Q Consensus       255 -~--~-D~~~l~~vLHd~~  269 (273)
                       .  . |+|-+--.||.--
T Consensus       141 ~~~~~FDvVScQFalHY~F  159 (331)
T PF03291_consen  141 PRSRKFDVVSCQFALHYAF  159 (331)
T ss_dssp             STTS-EEEEEEES-GGGGG
T ss_pred             ccCCCcceeehHHHHHHhc
Confidence             2  2 9999999999753

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=94.15  E-value=0.13  Score=39.43  Aligned_cols=49  Identities=20%  Similarity=0.335  Sum_probs=45.0

Q ss_pred             HHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           42 QAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        42 ~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      +..+...|.+.+.++|..|+.+++..+|+    +-..++++++.|++.|-|..
T Consensus        10 r~eLk~rIvElVRe~GRiTi~ql~~~TGa----sR~Tvk~~lreLVa~G~l~~   58 (127)
T PF06163_consen   10 REELKARIVELVREHGRITIKQLVAKTGA----SRNTVKRYLRELVARGDLYR   58 (127)
T ss_pred             HHHHHHHHHHHHHHcCCccHHHHHHHHCC----CHHHHHHHHHHHHHcCCeEe
Confidence            45567789999999999999999999999    99999999999999999986

>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea

Probab=94.09  E-value=0.13  Score=35.07  Aligned_cols=59  Identities=15%  Similarity=0.220  Sum_probs=44.5

Q ss_pred             hhHHHHhCC-CCCHHHHHHHhCcCC-CCCcchHHHHHHHHhcCCceeccccCCCcceecChhch
Q 024046           49 VFEIIAKAG-ELSAPEIAAQLQAQN-VKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK  110 (273)
Q Consensus        49 lfd~L~~~g-~~t~~eLA~~~g~~~-~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~  110 (273)
                      |+++|.+.+ |++..+|++.+..+. ..++..++|.|+.|...|++...   +.+.+.+|+.+.
T Consensus         3 IL~~L~~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~Glt~~~---g~~G~~iT~~G~   63 (66)
T PF08461_consen    3 ILRILAESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDGLTRKV---GRQGRIITEKGL   63 (66)
T ss_pred             HHHHHHHcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCCCcccc---CCcccccCHHHH
Confidence            567787765 999999999987521 12468999999999999988753   344567888764

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=93.97  E-value=0.037  Score=48.51  Aligned_cols=73  Identities=21%  Similarity=0.137  Sum_probs=56.0

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCCCCceEEEcccCC-CCCC--CCEEEecccccccCC
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPE--GDAILMKVGNFENYQ  270 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gD~f~-~~p~--~D~~~l~~vLHd~~~  270 (273)
                      .+....++|+|||.|.++..    +|.+..++.|+ -..+..++..+.......|..+ |.++  .|..+-..++|.++.
T Consensus        43 ~~~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT  118 (293)
T KOG1331|consen   43 QPTGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLST  118 (293)
T ss_pred             cCCcceeeecccCCcccCcC----CCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhh
Confidence            33478899999999997654    49999999999 4455556544444678889988 6664  399999999999875


Q ss_pred             C
Q 024046          271 S  271 (273)
Q Consensus       271 ~  271 (273)
                      .
T Consensus       119 ~  119 (293)
T KOG1331|consen  119 R  119 (293)
T ss_pred             H
Confidence            4

>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif

Probab=93.78  E-value=0.078  Score=34.52  Aligned_cols=43  Identities=23%  Similarity=0.317  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHH
Q 024046           37 LPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLL   86 (273)
Q Consensus        37 ~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L   86 (273)
                      .-.+|.+|.++|-||.=.   ..|+.|||+.+|+    ++..+...||-.
T Consensus         5 Q~e~L~~A~~~GYfd~PR---~~tl~elA~~lgi----s~st~~~~LRra   47 (53)
T PF04967_consen    5 QREILKAAYELGYFDVPR---RITLEELAEELGI----SKSTVSEHLRRA   47 (53)
T ss_pred             HHHHHHHHHHcCCCCCCC---cCCHHHHHHHhCC----CHHHHHHHHHHH
Confidence            346899999999997543   5899999999999    888887777754

This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.

>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria

Probab=93.78  E-value=0.11  Score=35.30  Aligned_cols=38  Identities=21%  Similarity=0.275  Sum_probs=30.9

Q ss_pred             hCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           55 KAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        55 ~~g-~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      +.| |=|+.|||+.+|++   ++..+.+.|+.|...|++...
T Consensus        21 ~~G~~Pt~rEIa~~~g~~---S~~tv~~~L~~Le~kG~I~r~   59 (65)
T PF01726_consen   21 ENGYPPTVREIAEALGLK---STSTVQRHLKALERKGYIRRD   59 (65)
T ss_dssp             HHSS---HHHHHHHHTSS---SHHHHHHHHHHHHHTTSEEEG
T ss_pred             HcCCCCCHHHHHHHhCCC---ChHHHHHHHHHHHHCcCccCC
Confidence            346 77999999999992   489999999999999999974

The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.

>COG3432 Predicted transcriptional regulator [Transcription]

Probab=93.71  E-value=0.065  Score=39.18  Aligned_cols=62  Identities=18%  Similarity=0.345  Sum_probs=48.0

Q ss_pred             hhHHHH--hCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhhc
Q 024046           49 VFEIIA--KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS  114 (273)
Q Consensus        49 lfd~L~--~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~~  114 (273)
                      +||.|.  ..|+....-|.-.+++    +-......++.|+..|++.....++...|.+|+.+..|+.
T Consensus        20 i~dIL~~~~~~~~~~Tri~y~aNl----ny~~~~~yi~~L~~~Gli~~~~~~~~~~y~lT~KG~~fle   83 (95)
T COG3432          20 IFDILKAISEGGIGITRIIYGANL----NYKRAQKYIEMLVEKGLIIKQDNGRRKVYELTEKGKRFLE   83 (95)
T ss_pred             HHHHHHHhcCCCCCceeeeeecCc----CHHHHHHHHHHHHhCCCEEeccCCccceEEEChhHHHHHH
Confidence            345555  3468889999999999    9999999999999999777642212237999999987753

>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional

Probab=93.70  E-value=0.15  Score=43.33  Aligned_cols=59  Identities=12%  Similarity=0.166  Sum_probs=47.6

Q ss_pred             HHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhh
Q 024046           51 EIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV  113 (273)
Q Consensus        51 d~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~  113 (273)
                      .++.+....|..+||+.+++    ++..+.|.|+-|...|++++....+...+.+|+.+..+.
T Consensus        14 g~l~~~~~IS~~eLA~~L~i----S~~Tvsr~Lk~LEe~GlI~R~~~~r~~~v~LTekG~~ll   72 (217)
T PRK14165         14 GAVNNTVKISSSEFANHTGT----SSKTAARILKQLEDEGYITRTIVPRGQLITITEKGLDVL   72 (217)
T ss_pred             hccCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEEcCCceEEEECHHHHHHH
Confidence            34544346899999999999    999999999999999999875322456789999887554

>PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species

Probab=93.55  E-value=0.1  Score=41.09  Aligned_cols=46  Identities=15%  Similarity=0.206  Sum_probs=39.3

Q ss_pred             hCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCc--ceecC
Q 024046           55 KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER--LYALN  106 (273)
Q Consensus        55 ~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~--~y~lt  106 (273)
                      ..|++|.+|||...|+    +.+.+..-|.++.+.|-+.+..  .+|  +|.++
T Consensus         3 q~Ga~T~eELA~~FGv----ttRkvaStLa~~ta~Grl~Rv~--q~gkfRy~iP   50 (155)
T PF07789_consen    3 QEGAKTAEELAGKFGV----TTRKVASTLAMVTATGRLIRVN--QNGKFRYCIP   50 (155)
T ss_pred             ccCcccHHHHHHHhCc----chhhhHHHHHHHHhcceeEEec--CCCceEEeCC
Confidence            4589999999999999    9999999999999999999874  444  45553

The region in question is approximately 150 amino acid residues long.

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=93.48  E-value=0.24  Score=41.63  Aligned_cols=69  Identities=19%  Similarity=0.243  Sum_probs=52.4

Q ss_pred             hcchhhHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCC-CeEEEeechHHHHhCCCCCCceEEEcccCC
Q 024046          179 NHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDLPHVVQDAPSYAGVEHVGGNMFE  251 (273)
Q Consensus       179 ~~~~~~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~~~Dlp~v~~~a~~~~ri~~~~gD~f~  251 (273)
                      +.+.+....+.+.+..+++...|+|+|+-.|..+-.+++.-.. .+++++|+-.+-    ..++|.++.+||+.
T Consensus        27 SRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~----~~~~V~~iq~d~~~   96 (205)
T COG0293          27 SRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK----PIPGVIFLQGDITD   96 (205)
T ss_pred             chHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc----cCCCceEEeeeccC
Confidence            3444445567777766888999999999999999988777654 457999984432    24569999999987

>PRK15431 ferrous iron transport protein FeoC; Provisional

Probab=93.29  E-value=0.19  Score=35.38  Aligned_cols=43  Identities=26%  Similarity=0.316  Sum_probs=39.6

Q ss_pred             hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        49 lfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      |=|+|...|..++.+||..++.    +++.++.+|..++..|-+++.
T Consensus         7 lRd~l~~~gr~s~~~Ls~~~~~----p~~~VeaMLe~l~~kGkverv   49 (78)
T PRK15431          7 VRDLLALRGRMEAAQISQTLNT----PQPMINAMLQQLESMGKAVRI   49 (78)
T ss_pred             HHHHHHHcCcccHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEee
Confidence            4478888889999999999999    999999999999999999974

>PRK11014 transcriptional repressor NsrR; Provisional

Probab=93.27  E-value=0.15  Score=40.11  Aligned_cols=61  Identities=10%  Similarity=0.070  Sum_probs=44.4

Q ss_pred             HHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecCh
Q 024046           39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP  107 (273)
Q Consensus        39 ~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~  107 (273)
                      .|+++.+.++.+   ....+.+.++||+..|+    ++..++++|..|...|+++...+ .+|.|.+..
T Consensus         9 YAl~~~i~la~~---~~g~~~s~~~ia~~~~i----s~~~vrk~l~~L~~~Glv~s~~G-~~GG~~l~~   69 (141)
T PRK11014          9 YGLRALIYMASL---PEGRMTSISEVTEVYGV----SRNHMVKIINQLSRAGYVTAVRG-KNGGIRLGK   69 (141)
T ss_pred             HHHHHHHHHhcC---CCCCccCHHHHHHHHCc----CHHHHHHHHHHHHhCCEEEEecC-CCCCeeecC
Confidence            344454444432   22127899999999999    99999999999999999997542 345676654

>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element

Probab=93.22  E-value=0.18  Score=36.59  Aligned_cols=46  Identities=24%  Similarity=0.330  Sum_probs=39.8

Q ss_pred             HHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhh
Q 024046           61 APEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV  113 (273)
Q Consensus        61 ~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~  113 (273)
                      +.+||+.+++    ++..+.+.++-|...|++...   ....|.+|+.+..+.
T Consensus         2 ~~ela~~l~i----s~stvs~~l~~L~~~glI~r~---~~~~~~lT~~g~~~~   47 (96)
T smart00529        2 TSEIAERLNV----SPPTVTQMLKKLEKDGLVEYE---PYRGITLTEKGRRLA   47 (96)
T ss_pred             HHHHHHHhCC----ChHHHHHHHHHHHHCCCEEEc---CCCceEechhHHHHH
Confidence            5799999999    999999999999999999983   445799999887654

iron dependent repressor

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=93.15  E-value=0.21  Score=41.93  Aligned_cols=73  Identities=16%  Similarity=0.160  Sum_probs=49.2

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC------CCCce-EEEcccCC-C-CCCC--CEEEeccc
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVE-HVGGNMFE-S-VPEG--DAILMKVG  264 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~-~~~gD~f~-~-~p~~--D~~~l~~v  264 (273)
                      +...||+||||+|..-. ...--|..++|.+|- |.+-+.+.+      ...+. |+.++--+ + ++.+  |+|+..-+
T Consensus        76 ~K~~vLEvgcGtG~Nfk-fy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv  154 (252)
T KOG4300|consen   76 GKGDVLEVGCGTGANFK-FYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV  154 (252)
T ss_pred             CccceEEecccCCCCcc-cccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence            45678999999998532 223335677899996 666554432      25566 88888776 3 5555  99998888


Q ss_pred             ccccCC
Q 024046          265 NFENYQ  270 (273)
Q Consensus       265 LHd~~~  270 (273)
                      |.-..|
T Consensus       155 LCSve~  160 (252)
T KOG4300|consen  155 LCSVED  160 (252)
T ss_pred             EeccCC
Confidence            765544

>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family

Probab=92.86  E-value=0.2  Score=33.43  Aligned_cols=38  Identities=24%  Similarity=0.445  Sum_probs=33.4

Q ss_pred             HhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           54 AKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        54 ~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      .+.++.+..+||+.+|+    ++..+..+++-|...|+++..
T Consensus        18 ~~~~~v~~~~iA~~L~v----s~~tvt~ml~~L~~~GlV~~~   55 (60)
T PF01325_consen   18 EEGGPVRTKDIAERLGV----SPPTVTEMLKRLAEKGLVEYE   55 (60)
T ss_dssp             HCTSSBBHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred             cCCCCccHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEec
Confidence            34359999999999999    999999999999999999963

The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=92.85  E-value=0.21  Score=45.08  Aligned_cols=84  Identities=11%  Similarity=0.125  Sum_probs=56.2

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCC----CCeEEEeec-hHHHHhCC------CCCCceE--EEcccCCC
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP----QIKAVNFDL-PHVVQDAP------SYAGVEH--VGGNMFES  252 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P----~l~~~~~Dl-p~v~~~a~------~~~ri~~--~~gD~f~~  252 (273)
                      +.|.+.+   +....|||+|||+|.=...|+++..    ..+.+.+|+ .+.++.+.      ..+.|++  +.|||..+
T Consensus        68 ~~Ia~~i---~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~  144 (319)
T TIGR03439        68 SDIAASI---PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG  144 (319)
T ss_pred             HHHHHhc---CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence            4455554   3456899999999997776666553    467899998 34444332      2366666  78999763


Q ss_pred             ---CC-----C-C-CEEEecccccccCCCC
Q 024046          253 ---VP-----E-G-DAILMKVGNFENYQSH  272 (273)
Q Consensus       253 ---~p-----~-~-D~~~l~~vLHd~~~~~  272 (273)
                         +|     . . -++++.+.+.++++++
T Consensus       145 l~~l~~~~~~~~~r~~~flGSsiGNf~~~e  174 (319)
T TIGR03439       145 LAWLKRPENRSRPTTILWLGSSIGNFSRPE  174 (319)
T ss_pred             HhhcccccccCCccEEEEeCccccCCCHHH
Confidence               22     2 2 5677778999988764

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional

Probab=92.74  E-value=0.17  Score=48.39  Aligned_cols=69  Identities=17%  Similarity=0.210  Sum_probs=57.0

Q ss_pred             HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhhcCCC
Q 024046           44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKD  117 (273)
Q Consensus        44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~~~~~  117 (273)
                      ..+..++..|...++.|..+||+.+++    ++..+.++++-|.+.|+++... .....|.+|+.++.++.+..
T Consensus         6 ~~e~~vL~~L~~~~~~s~~eLA~~l~l----~~~tVt~~i~~Le~kGlV~~~~-~~~~~i~LTeeG~~~~~~g~   74 (489)
T PRK04172          6 PNEKKVLKALKELKEATLEELAEKLGL----PPEAVMRAAEWLEEKGLVKVEE-RVEEVYVLTEEGKKYAEEGL   74 (489)
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCCEEEEe-eeEEEEEECHHHHHHHHhcC
Confidence            345667788877679999999999999    9999999999999999999743 12357999999987776643

>PHA02943 hypothetical protein; Provisional

Probab=92.71  E-value=0.26  Score=39.13  Aligned_cols=43  Identities=16%  Similarity=0.183  Sum_probs=38.8

Q ss_pred             ChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           48 GVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        48 glfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      .|++.| ..|.+|..+||+.+|+    +-...+-.|..|...|.+.+.
T Consensus        15 eILE~L-k~G~~TtseIAkaLGl----S~~qa~~~LyvLErEG~VkrV   57 (165)
T PHA02943         15 KTLRLL-ADGCKTTSRIANKLGV----SHSMARNALYQLAKEGMVLKV   57 (165)
T ss_pred             HHHHHH-hcCCccHHHHHHHHCC----CHHHHHHHHHHHHHcCceEEE
Confidence            477788 4489999999999999    999999999999999999985

>PRK06474 hypothetical protein; Provisional

Probab=92.67  E-value=0.21  Score=41.17  Aligned_cols=69  Identities=17%  Similarity=0.299  Sum_probs=54.0

Q ss_pred             HHHHHHHHHhChhHHHHhCC-CCCHHHHHHHh-CcCCCCCcchHHHHHHHHhcCCceeccccC-----CCcceecChhch
Q 024046           38 PMATQAAIQLGVFEIIAKAG-ELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSG-----GERLYALNPVSK  110 (273)
Q Consensus        38 ~~aL~~a~elglfd~L~~~g-~~t~~eLA~~~-g~~~~~~~~~l~rlL~~L~~~gll~~~~~~-----~~~~y~lt~~s~  110 (273)
                      ..+|.-..++.|++.|...+ +.|+.+|++.+ ++    +..-+.|.|+.|...|+++.....     ....|++++.+-
T Consensus         5 ~~~La~p~R~~Il~~L~~~~~~~ta~el~~~l~~i----s~aTvYrhL~~L~e~GLI~~~~~~~~~~~~ek~y~~~~~~~   80 (178)
T PRK06474          5 AEILMHPVRMKICQVLMRNKEGLTPLELVKILKDV----PQATLYRHLQTMVDSGILHVVKEKKVRSVSEKYYAINEEDA   80 (178)
T ss_pred             HHhhCCHHHHHHHHHHHhCCCCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEeecccccCceeEEEEecccee
Confidence            45667778999999998865 49999999999 57    888999999999999999974311     113577877653

>COG1378 Predicted transcriptional regulators [Transcription]

Probab=92.63  E-value=0.25  Score=42.85  Aligned_cols=62  Identities=21%  Similarity=0.245  Sum_probs=50.7

Q ss_pred             HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHh
Q 024046           46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYF  112 (273)
Q Consensus        46 elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l  112 (273)
                      |..++-+|-..|+.|+.|||+.+|+    +..++..+|+-|...|+++... +.+..|+.-+-...+
T Consensus        18 Ea~vY~aLl~~g~~tA~eis~~sgv----P~~kvY~vl~sLe~kG~v~~~~-g~P~~y~av~p~~~i   79 (247)
T COG1378          18 EAKVYLALLCLGEATAKEISEASGV----PRPKVYDVLRSLEKKGLVEVIE-GRPKKYRAVPPEELI   79 (247)
T ss_pred             HHHHHHHHHHhCCccHHHHHHHcCC----CchhHHHHHHHHHHCCCEEeeC-CCCceEEeCCHHHHH
Confidence            4445666666689999999999999    9999999999999999999753 366788887765543

>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional

Probab=92.54  E-value=0.22  Score=39.87  Aligned_cols=47  Identities=13%  Similarity=0.261  Sum_probs=43.4

Q ss_pred             HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      ..+..|+++|..+|..|..+||+.+|+    ++..+.+=++-|...|++..
T Consensus         9 ~~D~~Il~~Lq~d~R~s~~eiA~~lgl----S~~tV~~Ri~rL~~~GvI~~   55 (153)
T PRK11179          9 NLDRGILEALMENARTPYAELAKQFGV----SPGTIHVRVEKMKQAGIITG   55 (153)
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeee
Confidence            367789999999889999999999999    99999999999999999984

>PRK03573 transcriptional regulator SlyA; Provisional

Probab=92.48  E-value=0.36  Score=37.94  Aligned_cols=61  Identities=15%  Similarity=0.154  Sum_probs=47.2

Q ss_pred             hhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           49 VFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        49 lfd~L~~~g-~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      ++..|...+ +.|..+||+.+++    ++..+.++++-|...|++++.....+   -...+|+.+..+.
T Consensus        36 vL~~l~~~~~~~t~~eLa~~l~~----~~~tvt~~v~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~  100 (144)
T PRK03573         36 TLHNIHQLPPEQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLI  100 (144)
T ss_pred             HHHHHHHcCCCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeecCCCCcCeeeeEEChHHHHHH
Confidence            566666543 6899999999999    99999999999999999997421111   2577888887654

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=92.38  E-value=0.052  Score=49.00  Aligned_cols=70  Identities=23%  Similarity=0.337  Sum_probs=45.6

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCe-EEEeec-hHH---HHhCCCC-------CCceEEEcccCCCCCCCCEEEeccc
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIK-AVNFDL-PHV---VQDAPSY-------AGVEHVGGNMFESVPEGDAILMKVG  264 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~-~~~~Dl-p~v---~~~a~~~-------~ri~~~~gD~f~~~p~~D~~~l~~v  264 (273)
                      .+++|||||.|.|..+.++-.-+|+++ +++++. |.+   +.....+       -|-+-+.-|-. ++|.+|.|.+.-+
T Consensus       113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl-~lp~ad~ytl~i~  191 (484)
T COG5459         113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRL-SLPAADLYTLAIV  191 (484)
T ss_pred             CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhcc-CCCccceeehhhh
Confidence            357799999999999999999999998 577776 443   2222211       22333333311 5777787777666


Q ss_pred             ccc
Q 024046          265 NFE  267 (273)
Q Consensus       265 LHd  267 (273)
                      +|.
T Consensus       192 ~~e  194 (484)
T COG5459         192 LDE  194 (484)
T ss_pred             hhh
Confidence            554

>PRK11169 leucine-responsive transcriptional regulator; Provisional

Probab=92.36  E-value=0.21  Score=40.50  Aligned_cols=48  Identities=17%  Similarity=0.259  Sum_probs=44.3

Q ss_pred             HHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           43 AAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        43 ~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      ...+..|+.+|.++|..|..+||+++|+    ++..+.+=++-|...|++..
T Consensus        13 D~~D~~IL~~Lq~d~R~s~~eiA~~lgl----S~~tv~~Ri~rL~~~GvI~~   60 (164)
T PRK11169         13 DRIDRNILNELQKDGRISNVELSKRVGL----SPTPCLERVRRLERQGFIQG   60 (164)
T ss_pred             HHHHHHHHHHhccCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEE
Confidence            4468889999999899999999999999    99999999999999999984

>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators

Probab=92.16  E-value=0.44  Score=31.55  Aligned_cols=32  Identities=25%  Similarity=0.276  Sum_probs=29.9

Q ss_pred             CCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           59 LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        59 ~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      .|..+||+.+++    +...+.+.|..|...|+++.
T Consensus        26 ~~~~~la~~~~i----s~~~v~~~l~~L~~~G~i~~   57 (66)
T cd07377          26 PSERELAEELGV----SRTTVREALRELEAEGLVER   57 (66)
T ss_pred             CCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEe
Confidence            359999999999    99999999999999999986

This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=92.15  E-value=0.45  Score=41.40  Aligned_cols=71  Identities=13%  Similarity=0.106  Sum_probs=51.1

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCCCCceEEEcccCCCCCCC-CEEEecccccccCC
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVPEG-DAILMKVGNFENYQ  270 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gD~f~~~p~~-D~~~l~~vLHd~~~  270 (273)
                      ...++||||.|.|.....++..|.++  .+=+. +.+....++ .+++++..|=+..-+.. |+|.+.|+|.-..+
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~~v--~aTE~S~~Mr~rL~~-kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~  166 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFKEV--YATEASPPMRWRLSK-KGFTVLDIDDWQQTDFKFDVISCLNVLDRCDR  166 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcceE--EeecCCHHHHHHHHh-CCCeEEehhhhhccCCceEEEeehhhhhccCC
Confidence            45789999999999999999999984  33344 444443332 56777776666544433 99999999976544

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators

Probab=92.14  E-value=0.38  Score=36.26  Aligned_cols=61  Identities=28%  Similarity=0.432  Sum_probs=43.9

Q ss_pred             HhChhHHHHhC-CCCCHHHHHHHhCcCC-CCCcchHHHHHHHHhcCCceeccccC-CCcceecC
Q 024046           46 QLGVFEIIAKA-GELSAPEIAAQLQAQN-VKAPMMLDRMLRLLVSHRVLECSVSG-GERLYALN  106 (273)
Q Consensus        46 elglfd~L~~~-g~~t~~eLA~~~g~~~-~~~~~~l~rlL~~L~~~gll~~~~~~-~~~~y~lt  106 (273)
                      +.-|++.|... ++.|++||.+.+.-.. ..+..-+.|.|+.|+..|++.+.... +...|.++
T Consensus         3 R~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~~~~~~~~~~y~~~   66 (116)
T cd07153           3 RLAILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVREIELGDGKARYELN   66 (116)
T ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEEEEeCCCceEEEeC
Confidence            45678888764 4899999999984211 12888999999999999999975321 11356543

Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.

>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor

Probab=92.11  E-value=0.25  Score=32.13  Aligned_cols=34  Identities=26%  Similarity=0.303  Sum_probs=31.3

Q ss_pred             CC-CHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           58 EL-SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        58 ~~-t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      .. |..+||+.+|+    +...+++.+..|...|++...
T Consensus        19 ~l~s~~~la~~~~v----s~~tv~~~l~~L~~~g~i~~~   53 (60)
T smart00345       19 KLPSERELAAQLGV----SRTTVREALSRLEAEGLVQRR   53 (60)
T ss_pred             cCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence            45 89999999999    999999999999999999863

>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain

Probab=91.98  E-value=0.48  Score=34.72  Aligned_cols=44  Identities=16%  Similarity=0.197  Sum_probs=37.9

Q ss_pred             CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecC
Q 024046           57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN  106 (273)
Q Consensus        57 g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt  106 (273)
                      .++|..|||+.+|+    +...+.|.|..|...|++...  .+.+.|..|
T Consensus        46 ~~is~~eLa~~~g~----sr~tVsr~L~~Le~~GlI~r~--~~~~~~~~n   89 (95)
T TIGR01610        46 DRVTATVIAELTGL----SRTHVSDAIKSLARRRIIFRQ--GMMGIVGVN   89 (95)
T ss_pred             CccCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeee--cCCceeecC
Confidence            48999999999999    999999999999999999974  233667666

This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.

>PRK13777 transcriptional regulator Hpr; Provisional

Probab=91.94  E-value=1.7  Score=35.93  Aligned_cols=63  Identities=14%  Similarity=-0.010  Sum_probs=50.0

Q ss_pred             hChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        47 lglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      ..++-.|...++.|..+||+.+++    +...+.+++.-|...|++.+.....+   -...+|+.+..+.
T Consensus        48 ~~iL~~L~~~~~itq~eLa~~l~l----~~sTvtr~l~rLE~kGlI~R~~~~~DrR~~~I~LTekG~~l~  113 (185)
T PRK13777         48 HHILWIAYHLKGASISEIAKFGVM----HVSTAFNFSKKLEERGYLTFSKKEDDKRNTYIELTEKGEELL  113 (185)
T ss_pred             HHHHHHHHhCCCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence            356777777679999999999999    98999999999999999997422122   2577888887665

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=91.85  E-value=0.47  Score=43.56  Aligned_cols=76  Identities=20%  Similarity=0.185  Sum_probs=58.1

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCe---------------------------------------EE
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIK---------------------------------------AV  225 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~---------------------------------------~~  225 (273)
                      +..++..-. |.+...++|==||+|.++++.+-..+++-                                       .+
T Consensus       180 AaAil~lag-w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~  258 (381)
T COG0116         180 AAAILLLAG-WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIY  258 (381)
T ss_pred             HHHHHHHcC-CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEE
Confidence            445555444 88778999999999999999999887532                                       67


Q ss_pred             Eeec-hHHHHhCCCC-------CCceEEEcccCC-CCC-C-CCEEEe
Q 024046          226 NFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVP-E-GDAILM  261 (273)
Q Consensus       226 ~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~p-~-~D~~~l  261 (273)
                      +.|. |.+++.|+.+       +.|+|..+|+-. +-| + .|++++
T Consensus       259 G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~  305 (381)
T COG0116         259 GSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVIS  305 (381)
T ss_pred             EecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEe
Confidence            9998 8888887653       789999999975 222 3 377765

>PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors

Probab=91.66  E-value=0.15  Score=38.03  Aligned_cols=42  Identities=19%  Similarity=0.422  Sum_probs=33.4

Q ss_pred             hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        49 lfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      |+++|...|.++-++||+.+|+    ++..++++|..|...|++..
T Consensus        18 Il~~L~~~~~l~de~la~~~~l----~~~~vRkiL~~L~~~~lv~~   59 (105)
T PF02002_consen   18 ILDALLRKGELTDEDLAKKLGL----KPKEVRKILYKLYEDGLVSY   59 (105)
T ss_dssp             HHHHHHHH--B-HHHHHHTT-S-----HHHHHHHHHHHHHHSS-EE
T ss_pred             HHHHHHHcCCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCeEE
Confidence            6888887789999999999999    99999999999999999975

Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A.

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=91.62  E-value=0.4  Score=42.77  Aligned_cols=68  Identities=18%  Similarity=0.239  Sum_probs=46.8

Q ss_pred             CCCcceEEEecCCccHHHHHHHHH-------CCCCeEEEeec-hHHHHhCCC--------CCCceEEEcccCC-C-CC--
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSK-------YPQIKAVNFDL-PHVVQDAPS--------YAGVEHVGGNMFE-S-VP--  254 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~-------~P~l~~~~~Dl-p~v~~~a~~--------~~ri~~~~gD~f~-~-~p--  254 (273)
                      .....+|+|-.||+|.++.++.+.       .+..+..++|. |.++..+..        ...+.+..+|.|. + ..  
T Consensus        44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~  123 (311)
T PF02384_consen   44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN  123 (311)
T ss_dssp             T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred             ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence            456678999999999999999885       58889999998 666654432        1335688999987 2 22  


Q ss_pred             CC-CEEEec
Q 024046          255 EG-DAILMK  262 (273)
Q Consensus       255 ~~-D~~~l~  262 (273)
                      .. |+|+..
T Consensus       124 ~~~D~ii~N  132 (311)
T PF02384_consen  124 QKFDVIIGN  132 (311)
T ss_dssp             --EEEEEEE
T ss_pred             cccccccCC
Confidence            22 888753

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>COG1522 Lrp Transcriptional regulators [Transcription]

Probab=91.48  E-value=0.33  Score=38.46  Aligned_cols=47  Identities=17%  Similarity=0.334  Sum_probs=43.3

Q ss_pred             HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      ..+..|+..|...++.+..+||+.+|+    ++..+.+-++-|...|++..
T Consensus         8 ~~D~~IL~~L~~d~r~~~~eia~~lgl----S~~~v~~Ri~~L~~~GiI~~   54 (154)
T COG1522           8 DIDRRILRLLQEDARISNAELAERVGL----SPSTVLRRIKRLEEEGVIKG   54 (154)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCceee
Confidence            356778999999889999999999999    99999999999999999985

>PF14394 DUF4423: Domain of unknown function (DUF4423)

Probab=91.42  E-value=0.43  Score=39.01  Aligned_cols=44  Identities=18%  Similarity=0.192  Sum_probs=39.7

Q ss_pred             CCHHHHHHHh--CcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhc
Q 024046           59 LSAPEIAAQL--QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS  109 (273)
Q Consensus        59 ~t~~eLA~~~--g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s  109 (273)
                      .++++||+.+  ++    +...++.-|..|..+|++++.   ++|.|..|..+
T Consensus        40 ~d~~~iak~l~p~i----s~~ev~~sL~~L~~~gli~k~---~~g~y~~t~~~   85 (171)
T PF14394_consen   40 PDPEWIAKRLRPKI----SAEEVRDSLEFLEKLGLIKKD---GDGKYVQTDKS   85 (171)
T ss_pred             CCHHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEEC---CCCcEEEecce
Confidence            3899999999  88    999999999999999999984   66899998765

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=91.41  E-value=0.58  Score=43.22  Aligned_cols=73  Identities=21%  Similarity=0.206  Sum_probs=48.8

Q ss_pred             CcceEEEecCCccHHHHH--------HHHH-------CCCCeEEEeechH-----HHHhCCC---------------CCC
Q 024046          197 NVERLVDVGGGFGVTLSM--------ITSK-------YPQIKAVNFDLPH-----VVQDAPS---------------YAG  241 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~--------l~~~-------~P~l~~~~~Dlp~-----v~~~a~~---------------~~r  241 (273)
                      +.-+|+|+|||+|..+..        +.++       -|++++..=|+|.     +......               ..+
T Consensus        63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~  142 (386)
T PLN02668         63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR  142 (386)
T ss_pred             cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence            456899999999975532        2332       3678888889975     1111110               012


Q ss_pred             ---ceEEEcccCCC-CCCC--CEEEecccccccC
Q 024046          242 ---VEHVGGNMFES-VPEG--DAILMKVGNFENY  269 (273)
Q Consensus       242 ---i~~~~gD~f~~-~p~~--D~~~l~~vLHd~~  269 (273)
                         +..++|+||.. +|..  ++++.+..||=-+
T Consensus       143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS  176 (386)
T PLN02668        143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLS  176 (386)
T ss_pred             ceEEEecCccccccccCCCceEEEEeeccceecc
Confidence               46778999995 8875  9999999998433

>COG1846 MarR Transcriptional regulators [Transcription]

Probab=91.18  E-value=0.52  Score=35.23  Aligned_cols=70  Identities=19%  Similarity=0.237  Sum_probs=53.3

Q ss_pred             HHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhhcC
Q 024046           42 QAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFVSN  115 (273)
Q Consensus        42 ~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~~~  115 (273)
                      -+..+..++..|...++.+..+||+.+++    ++..+.++++-|...|++.+.....+   -.+.+|+.+..+...
T Consensus        20 lt~~q~~~L~~l~~~~~~~~~~la~~l~i----~~~~vt~~l~~Le~~glv~r~~~~~DrR~~~l~lT~~G~~~~~~   92 (126)
T COG1846          20 LTPPQYQVLLALYEAGGITVKELAERLGL----DRSTVTRLLKRLEDKGLIERLRDPEDRRAVLVRLTEKGRELLEQ   92 (126)
T ss_pred             CCHHHHHHHHHHHHhCCCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeecCCccccceeeEEECccHHHHHHH
Confidence            34566777778887655555999999999    99999999999999999997532111   257888887765543

>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif

Probab=91.15  E-value=0.3  Score=28.26  Aligned_cols=31  Identities=19%  Similarity=0.322  Sum_probs=25.9

Q ss_pred             CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCce
Q 024046           58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVL   92 (273)
Q Consensus        58 ~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll   92 (273)
                      |+|-.|||..+|+    ...-+.|+|..|...|++
T Consensus         2 ~mtr~diA~~lG~----t~ETVSR~l~~l~~~glI   32 (32)
T PF00325_consen    2 PMTRQDIADYLGL----TRETVSRILKKLERQGLI   32 (32)
T ss_dssp             E--HHHHHHHHTS-----HHHHHHHHHHHHHTTSE
T ss_pred             CcCHHHHHHHhCC----cHHHHHHHHHHHHHcCCC
Confidence            5788999999999    999999999999998875

These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....

>PRK05638 threonine synthase; Validated

Probab=91.10  E-value=0.42  Score=45.10  Aligned_cols=63  Identities=17%  Similarity=0.242  Sum_probs=49.1

Q ss_pred             HhChhHHHHhCCCCCHHHHHHHhC--cCCCCCcchHHHHHHHHhcCCceecc-ccCCCcceecChhchHhh
Q 024046           46 QLGVFEIIAKAGELSAPEIAAQLQ--AQNVKAPMMLDRMLRLLVSHRVLECS-VSGGERLYALNPVSKYFV  113 (273)
Q Consensus        46 elglfd~L~~~g~~t~~eLA~~~g--~~~~~~~~~l~rlL~~L~~~gll~~~-~~~~~~~y~lt~~s~~l~  113 (273)
                      ++.|+..|.+ ++.++.||++.++  +    +...+.+.|+.|...|+++.. .....-.|++|+.+..++
T Consensus       373 r~~IL~~L~~-~~~~~~el~~~l~~~~----s~~~v~~hL~~Le~~GLV~~~~~~g~~~~Y~Lt~~g~~~l  438 (442)
T PRK05638        373 KLEILKILSE-REMYGYEIWKALGKPL----KYQAVYQHIKELEELGLIEEAYRKGRRVYYKLTEKGRRLL  438 (442)
T ss_pred             HHHHHHHHhh-CCccHHHHHHHHcccC----CcchHHHHHHHHHHCCCEEEeecCCCcEEEEECcHHHHHH
Confidence            3447778876 6999999999998  7    888999999999999999752 101223599999887554

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=90.83  E-value=0.2  Score=41.43  Aligned_cols=64  Identities=17%  Similarity=0.206  Sum_probs=46.6

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCC---C---CCC-CEEEe
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---V---PEG-DAILM  261 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~---~---p~~-D~~~l  261 (273)
                      ...++||+=+|+|.++.+.+.+--. +++.+|. +..+..++++       ++++++.+|.+..   .   ... |+|++
T Consensus        42 ~g~~vLDLFaGSGalGlEALSRGA~-~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl  120 (183)
T PF03602_consen   42 EGARVLDLFAGSGALGLEALSRGAK-SVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL  120 (183)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHTT-S-EEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred             CCCeEEEcCCccCccHHHHHhcCCC-eEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence            4589999999999999999998643 6889998 6766665542       5799999998762   2   233 98886

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets

Probab=90.73  E-value=0.38  Score=31.05  Aligned_cols=39  Identities=15%  Similarity=0.294  Sum_probs=32.9

Q ss_pred             ChhHHH-HhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCC
Q 024046           48 GVFEII-AKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHR   90 (273)
Q Consensus        48 glfd~L-~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~g   90 (273)
                      .|+..| ...++.|.++||+.+++    +.+-+.+-+..|...|
T Consensus         4 ~il~~L~~~~~~it~~eLa~~l~v----S~rTi~~~i~~L~~~~   43 (55)
T PF08279_consen    4 QILKLLLESKEPITAKELAEELGV----SRRTIRRDIKELREWG   43 (55)
T ss_dssp             HHHHHHHHTTTSBEHHHHHHHCTS-----HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCcCHHHHHHHhCC----CHHHHHHHHHHHHHCC
Confidence            466677 34347999999999999    9999999999999999

The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=90.69  E-value=0.25  Score=46.79  Aligned_cols=55  Identities=20%  Similarity=0.382  Sum_probs=44.6

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEc---ccCC
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGG---NMFE  251 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~g---D~f~  251 (273)
                      ++..+.++||-||+|.++.++++..-  +++++++ |+.++.|+.+      .+.+|++|   |.|.
T Consensus       381 l~~~k~llDv~CGTG~iglala~~~~--~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~  445 (534)
T KOG2187|consen  381 LPADKTLLDVCCGTGTIGLALARGVK--RVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFP  445 (534)
T ss_pred             CCCCcEEEEEeecCCceehhhhcccc--ceeeeecChhhcchhhhcchhcCccceeeeecchhhccc
Confidence            55668999999999999999998864  4788887 8888888753      57789998   5554

>PRK10870 transcriptional repressor MprA; Provisional

Probab=90.60  E-value=0.96  Score=37.06  Aligned_cols=65  Identities=12%  Similarity=0.123  Sum_probs=49.6

Q ss_pred             HhChhHHHHhC--CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhhc
Q 024046           46 QLGVFEIIAKA--GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFVS  114 (273)
Q Consensus        46 elglfd~L~~~--g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~~  114 (273)
                      +..++-.|...  ++.|..|||+.+++    +...+.+++.-|...|++++.....+   -...+|+.+..++.
T Consensus        57 q~~iL~~L~~~~~~~it~~eLa~~l~l----~~~tvsr~v~rLe~kGlV~R~~~~~DrR~~~v~LT~~G~~~~~  126 (176)
T PRK10870         57 LFMALITLESQENHSIQPSELSCALGS----SRTNATRIADELEKRGWIERRESDNDRRCLHLQLTEKGHEFLR  126 (176)
T ss_pred             HHHHHHHHhcCCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence            34466666532  47899999999999    99999999999999999997432122   25778888876653

>PRK10742 putative methyltransferase; Provisional

Probab=90.17  E-value=0.74  Score=39.90  Aligned_cols=73  Identities=11%  Similarity=0.189  Sum_probs=52.8

Q ss_pred             HHHHhhcccCCCcc--eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC--------------C-CCceEEEc
Q 024046          186 ERILEHYEGFQNVE--RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS--------------Y-AGVEHVGG  247 (273)
Q Consensus       186 ~~il~~~~~~~~~~--~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~--------------~-~ri~~~~g  247 (273)
                      +.++++.. +++..  +|||.=+|.|..+..++.+  ..+++.+|. |.+....+.              . .||+++.+
T Consensus        76 ~~l~kAvg-lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~  152 (250)
T PRK10742         76 EAVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA  152 (250)
T ss_pred             cHHHHHhC-CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence            45566665 66554  9999999999999999999  677999998 544332211              1 57999999


Q ss_pred             ccCCC---CCCC-CEEEe
Q 024046          248 NMFES---VPEG-DAILM  261 (273)
Q Consensus       248 D~f~~---~p~~-D~~~l  261 (273)
                      |..+-   .+.. |+|++
T Consensus       153 da~~~L~~~~~~fDVVYl  170 (250)
T PRK10742        153 SSLTALTDITPRPQVVYL  170 (250)
T ss_pred             cHHHHHhhCCCCCcEEEE
Confidence            98872   3333 99886

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=90.11  E-value=0.47  Score=43.79  Aligned_cols=63  Identities=11%  Similarity=0.130  Sum_probs=47.9

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHHHhCCCC------CCceEEEcccCCCCC---C-CCEEEe
Q 024046          199 ERLVDVGGGFGVTLSMITSKYPQI-KAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP---E-GDAILM  261 (273)
Q Consensus       199 ~~vvDVGGG~G~~~~~l~~~~P~l-~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~p---~-~D~~~l  261 (273)
                      -+|||.-+|+|..++..+++.++. +++..|+ |..++.++.+      ..+++..+|.+.-+.   . .|+|.+
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdl  120 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDI  120 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEe
Confidence            589999999999999999997654 5788998 8888776542      357888888876221   2 377765

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=90.04  E-value=0.29  Score=44.81  Aligned_cols=58  Identities=22%  Similarity=0.361  Sum_probs=40.4

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcc
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGN  248 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD  248 (273)
                      .+++.++ .++. .|+|+=||.|.++..|++..-  +++++|. ++.++.|+.+      ++++|+.++
T Consensus       188 ~~~~~l~-~~~~-~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~  252 (352)
T PF05958_consen  188 QALEWLD-LSKG-DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGD  252 (352)
T ss_dssp             HHHHHCT-T-TT-EEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--
T ss_pred             HHHHHhh-cCCC-cEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEee
Confidence            3444444 3333 799999999999999999976  4788887 7788877642      678998764

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF08221 HTH_9: RNA polymerase III subunit RPC82 helix-turn-helix domain; InterPro: IPR013197 DNA-directed RNA polymerases 2

Probab=90.02  E-value=0.47  Score=31.88  Aligned_cols=42  Identities=24%  Similarity=0.432  Sum_probs=35.6

Q ss_pred             hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        49 lfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      |++.|-..|+.|+.+|++.+++    +++.++.-|-.|...|++..
T Consensus        18 V~~~Ll~~G~ltl~~i~~~t~l----~~~~Vk~~L~~LiQh~~v~y   59 (62)
T PF08221_consen   18 VGEVLLSRGRLTLREIVRRTGL----SPKQVKKALVVLIQHNLVQY   59 (62)
T ss_dssp             HHHHHHHC-SEEHHHHHHHHT------HHHHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHcCCcCHHHHHHHhCC----CHHHHHHHHHHHHHcCCeee
Confidence            6677777799999999999999    99999999999999999974

7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae (Baker's yeast) RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In S. cerevisiae, the enzyme is composed of 15 subunits, ranging from 10 kDa to about 160 kDa []. This region is probably a DNA-binding helix-turn-helix.; PDB: 2XV4_S 2XUB_A.

>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain

Probab=89.99  E-value=0.51  Score=44.79  Aligned_cols=71  Identities=11%  Similarity=0.112  Sum_probs=58.8

Q ss_pred             HHHHhChhHHHHhCCC-CCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhhcCCCC
Q 024046           43 AAIQLGVFEIIAKAGE-LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDG  118 (273)
Q Consensus        43 ~a~elglfd~L~~~g~-~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~~~~~~  118 (273)
                      ++.+..|+..|...++ .+.++||+.+|+    +...+.+.+..|.+.|+++... .....|.+|+.++..+.+..+
T Consensus         2 ~~~e~~iL~~l~~~~~~~~~~~la~~~g~----~~~~v~~~~~~L~~kg~v~~~~-~~~~~~~LT~eG~~~l~~G~P   73 (492)
T PLN02853          2 AMAEEALLGALSNNEEISDSGQFAASHGL----DHNEVVGVIKSLHGFRYVDAQD-IKRETWVLTEEGKKYAAEGSP   73 (492)
T ss_pred             chHHHHHHHHHHhcCCCCCHHHHHHHcCC----CHHHHHHHHHHHHhCCCEEEEE-EEEEEEEECHHHHHHHHcCCH
Confidence            3567788889987665 899999999999    9999999999999999998643 244689999999887776543

>COG5631 Predicted transcription regulator, contains HTH domain (MarR family) [Transcription]

Probab=89.89  E-value=1.1  Score=36.04  Aligned_cols=78  Identities=21%  Similarity=0.219  Sum_probs=57.4

Q ss_pred             HhhhhHHHHHHHHHHhC-------hhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcce
Q 024046           32 AMGVVLPMATQAAIQLG-------VFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLY  103 (273)
Q Consensus        32 ~~g~~~~~aL~~a~elg-------lfd~L~~~g-~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y  103 (273)
                      +++-|...|+.++.+.+       |+-.+.-.+ |+++.||+..++..   |-..+..-||.|...|+++.-.....-.|
T Consensus        64 Af~rW~vrCmAaag~~~ls~~e~l~lH~irhrdR~K~laDic~~ln~e---Dth~itYslrKL~k~gLit~t~~gkevTy  140 (199)
T COG5631          64 AFGRWQVRCMAAAGEFSLSGPENLLLHIIRHRDRPKSLADICQMLNRE---DTHNITYSLRKLLKGGLITRTGSGKEVTY  140 (199)
T ss_pred             HHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCchhhHHHHHHHhccc---cchhHHHHHHHHHhccceecCCCCceEEE
Confidence            55668888888887666       344444444 99999999999983   56677888999999999997422222368


Q ss_pred             ecChhchHh
Q 024046          104 ALNPVSKYF  112 (273)
Q Consensus       104 ~lt~~s~~l  112 (273)
                      ..|+.+..-
T Consensus       141 ~vTa~G~~a  149 (199)
T COG5631         141 EVTALGHRA  149 (199)
T ss_pred             EEecchHHH
Confidence            888877543

>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B

Probab=89.85  E-value=0.64  Score=28.61  Aligned_cols=37  Identities=19%  Similarity=0.344  Sum_probs=27.3

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHH
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRL   85 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~   85 (273)
                      ++..|+..|...+..+..+||+.+|+    ++..+.+=++.
T Consensus         4 ~D~~Il~~Lq~d~r~s~~~la~~lgl----S~~~v~~Ri~r   40 (42)
T PF13404_consen    4 LDRKILRLLQEDGRRSYAELAEELGL----SESTVRRRIRR   40 (42)
T ss_dssp             HHHHHHHHHHH-TTS-HHHHHHHHTS-----HHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCccHHHHHHHHCc----CHHHHHHHHHH
Confidence            45678899999889999999999999    88766554443

...

>PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks

Probab=89.61  E-value=0.48  Score=33.08  Aligned_cols=46  Identities=20%  Similarity=0.253  Sum_probs=41.2

Q ss_pred             HHhChhHHHHhCC--CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           45 IQLGVFEIIAKAG--ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        45 ~elglfd~L~~~g--~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      .+..+++.|..++  +.+-.||++.+|.    |++.+-..++.|...|++.+
T Consensus         3 ~~~~~Le~I~rsR~~Gi~q~~L~~~~~~----D~r~i~~~~k~L~~~gLI~k   50 (75)
T PF04182_consen    3 IQYCLLERIARSRYNGITQSDLSKLLGI----DPRSIFYRLKKLEKKGLIVK   50 (75)
T ss_pred             hHHHHHHHHHhcCCCCEehhHHHHHhCC----CchHHHHHHHHHHHCCCEEE
Confidence            4566788888765  8999999999999    99999999999999999996

This family represents the subunit within TFIIIC involved in B-block binding []. Although defined as a yeast protein, it is also found in a number of other organisms.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=89.37  E-value=0.61  Score=43.84  Aligned_cols=55  Identities=24%  Similarity=0.341  Sum_probs=44.7

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCC
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE  251 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~  251 (273)
                      ..+..+++|+=||.|.++..|+++.  .+++++|+ |+.++.|+.+      ++++|+.+|..+
T Consensus       291 ~~~~~~vlDlYCGvG~f~l~lA~~~--~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~  352 (432)
T COG2265         291 LAGGERVLDLYCGVGTFGLPLAKRV--KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEE  352 (432)
T ss_pred             hcCCCEEEEeccCCChhhhhhcccC--CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHH
Confidence            4566899999999999999999664  45788897 7777776542      569999999876

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=89.24  E-value=0.72  Score=41.39  Aligned_cols=91  Identities=13%  Similarity=0.227  Sum_probs=63.2

Q ss_pred             HHHHHHHHHhcchhhHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHH-HHhCCCC--------C
Q 024046          170 NETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHV-VQDAPSY--------A  240 (273)
Q Consensus       170 ~~~f~~am~~~~~~~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v-~~~a~~~--------~  240 (273)
                      .++|++++.+       .++..|.  +....++|+|||-|.-++..-++-=+ ..++.|+.+| |+.|+.+        +
T Consensus        99 lRnfNNwIKs-------~LI~~y~--~~~~~~~~LgCGKGGDLlKw~kAgI~-~~igiDIAevSI~qa~~RYrdm~~r~~  168 (389)
T KOG1975|consen   99 LRNFNNWIKS-------VLINLYT--KRGDDVLDLGCGKGGDLLKWDKAGIG-EYIGIDIAEVSINQARKRYRDMKNRFK  168 (389)
T ss_pred             hhhhhHHHHH-------HHHHHHh--ccccccceeccCCcccHhHhhhhccc-ceEeeehhhccHHHHHHHHHHHHhhhh
Confidence            4456665532       3455553  56678999999999999888877322 3699999665 7777652        2


Q ss_pred             ----CceEEEcccCC---------CCCCCCEEEecccccccCC
Q 024046          241 ----GVEHVGGNMFE---------SVPEGDAILMKVGNFENYQ  270 (273)
Q Consensus       241 ----ri~~~~gD~f~---------~~p~~D~~~l~~vLHd~~~  270 (273)
                          .+.|+.+|=|.         +.|..|++-+--++|.-..
T Consensus       169 ~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFe  211 (389)
T KOG1975|consen  169 KFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFE  211 (389)
T ss_pred             cccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeec
Confidence                36888998875         1233599999999997543

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=88.97  E-value=1.5  Score=36.67  Aligned_cols=76  Identities=16%  Similarity=0.175  Sum_probs=52.3

Q ss_pred             cccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCCCCCC-CCEEEeccc
Q 024046          192 YEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPE-GDAILMKVG  264 (273)
Q Consensus       192 ~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~~~p~-~D~~~l~~v  264 (273)
                      .+++-..++|||.|.|+|..+++.++.--. ..+.-|. |-.++.++-+     -.|.++..|.-. .|. .|++++.-+
T Consensus        74 ~PetVrgkrVLd~gagsgLvaIAaa~aGA~-~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g-~~~~~Dl~LagDl  151 (218)
T COG3897          74 HPETVRGKRVLDLGAGSGLVAIAAARAGAA-EVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG-SPPAFDLLLAGDL  151 (218)
T ss_pred             CccccccceeeecccccChHHHHHHHhhhH-HHHhcCCChHHHHHhhcchhhccceeEEeeccccC-CCcceeEEEeece
Confidence            344667899999999999999988877432 2344454 4444443322     347888888776 554 499999988


Q ss_pred             ccccC
Q 024046          265 NFENY  269 (273)
Q Consensus       265 LHd~~  269 (273)
                      .++.+
T Consensus       152 fy~~~  156 (218)
T COG3897         152 FYNHT  156 (218)
T ss_pred             ecCch
Confidence            88764

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=88.91  E-value=0.37  Score=40.84  Aligned_cols=75  Identities=13%  Similarity=0.076  Sum_probs=44.2

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-----CCCc-eEEEcccCC--CCCCC-CEEEeccccc
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----YAGV-EHVGGNMFE--SVPEG-DAILMKVGNF  266 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~ri-~~~~gD~f~--~~p~~-D~~~l~~vLH  266 (273)
                      +..+.||.|+|.|.++..++..+=+ ++-++|- +..++.|++     .+++ ++...-+-+  |.+.. |+|++-+++-
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~-~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg  133 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFD-EVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG  133 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-S-EEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred             CcceEEecccccchhHHHHHHHhcC-EeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence            4689999999999999988665422 3555554 777777763     2332 333333322  33333 9999999998


Q ss_pred             ccCCCC
Q 024046          267 ENYQSH  272 (273)
Q Consensus       267 d~~~~~  272 (273)
                      +-+|++
T Consensus       134 hLTD~d  139 (218)
T PF05891_consen  134 HLTDED  139 (218)
T ss_dssp             GS-HHH
T ss_pred             cCCHHH
Confidence            887753

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PRK13509 transcriptional repressor UlaR; Provisional

Probab=88.75  E-value=0.71  Score=40.12  Aligned_cols=46  Identities=17%  Similarity=0.234  Sum_probs=41.8

Q ss_pred             HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        46 elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      +..|.+.|.+.|..++.|||+.+|+    ++.-++|-|+.|...|++.+.
T Consensus         7 ~~~Il~~l~~~~~~~~~ela~~l~v----S~~TirRdL~~Le~~g~i~r~   52 (251)
T PRK13509          7 HQILLELLAQLGFVTVEKVIERLGI----SPATARRDINKLDESGKLKKV   52 (251)
T ss_pred             HHHHHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence            3457889998889999999999999    999999999999999999873

>COG1733 Predicted transcriptional regulators [Transcription]

Probab=88.75  E-value=1.1  Score=34.44  Aligned_cols=76  Identities=18%  Similarity=0.217  Sum_probs=57.4

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhC-cCCCCCcchHHHHHHHHhcCCceeccccC---C
Q 024046           24 SYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQ-AQNVKAPMMLDRMLRLLVSHRVLECSVSG---G   99 (273)
Q Consensus        24 ~~~~l~~~~~g~~~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g-~~~~~~~~~l~rlL~~L~~~gll~~~~~~---~   99 (273)
                      +.....+++-+-|..-.|+.         |.. |+....||-..++ +    ++.-|.+-|+.|...|++++....   .
T Consensus        12 ~~~~~l~~ig~kW~~lIl~~---------L~~-g~~RF~eL~r~i~~I----s~k~Ls~~Lk~Le~~Glv~R~~~~~~Pp   77 (120)
T COG1733          12 PVEEALEVIGGKWTLLILRD---------LFD-GPKRFNELRRSIGGI----SPKMLSRRLKELEEDGLVERVVYPEEPP   77 (120)
T ss_pred             CHHHHHHHHcCccHHHHHHH---------Hhc-CCCcHHHHHHHcccc----CHHHHHHHHHHHHHCCCEEeeecCCCCc
Confidence            45666666667666665553         444 7999999999999 8    999999999999999999975320   0


Q ss_pred             CcceecChhchHhh
Q 024046          100 ERLYALNPVSKYFV  113 (273)
Q Consensus       100 ~~~y~lt~~s~~l~  113 (273)
                      .-.|++|+.++.|.
T Consensus        78 rveY~LT~~G~~L~   91 (120)
T COG1733          78 RVEYRLTEKGRDLL   91 (120)
T ss_pred             eeEEEEhhhHHHHH
Confidence            13699999887664

>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY

Probab=88.66  E-value=2.8  Score=36.04  Aligned_cols=63  Identities=27%  Similarity=0.305  Sum_probs=48.6

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHhChhHHHHh-CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           26 SHAMQLAMGVVLPMATQAAIQLGVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        26 ~~l~~~~~g~~~~~aL~~a~elglfd~L~~-~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      ..+.+++.+.....=+.+.-  .|++.|.. .|-.+..+||+++|+    +...+++-++.|...|+++.
T Consensus       167 ka~Vq~Ai~tLSySEleAv~--~IL~~L~~~egrlse~eLAerlGV----SRs~ireAlrkLE~aGvIe~  230 (251)
T TIGR02787       167 KAAVQMAINTLSYSELEAVE--HIFEELDGNEGLLVASKIADRVGI----TRSVIVNALRKLESAGVIES  230 (251)
T ss_pred             HHHHHHHHHhccHhHHHHHH--HHHHHhccccccccHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEe
Confidence            34455555554444344332  47888987 479999999999999    99999999999999999996

This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.

>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A

Probab=88.65  E-value=0.7  Score=31.83  Aligned_cols=42  Identities=21%  Similarity=0.265  Sum_probs=36.3

Q ss_pred             CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecCh
Q 024046           58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP  107 (273)
Q Consensus        58 ~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~  107 (273)
                      +.|-++||..+|+    +...+.|+|+.|...|+++.    ..+.+.+..
T Consensus        28 ~lt~~~iA~~~g~----sr~tv~r~l~~l~~~g~I~~----~~~~i~I~d   69 (76)
T PF13545_consen   28 PLTQEEIADMLGV----SRETVSRILKRLKDEGIIEV----KRGKIIILD   69 (76)
T ss_dssp             ESSHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE----ETTEEEESS
T ss_pred             cCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE----cCCEEEECC
Confidence            7899999999999    99999999999999999996    345555544

...

>COG2512 Predicted membrane-associated trancriptional regulator [Transcription]

Probab=88.32  E-value=0.62  Score=40.69  Aligned_cols=47  Identities=19%  Similarity=0.374  Sum_probs=42.1

Q ss_pred             HhChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccc
Q 024046           46 QLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV   96 (273)
Q Consensus        46 elglfd~L~~~g-~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~   96 (273)
                      |..+.++|.+.| ..+=+||.+++|+    +...+.|+|+-|...|++++..
T Consensus       197 e~~il~~i~~~GGri~Q~eL~r~lgl----sktTvsR~L~~LEk~GlIe~~K  244 (258)
T COG2512         197 EKEILDLIRERGGRITQAELRRALGL----SKTTVSRILRRLEKRGLIEKEK  244 (258)
T ss_pred             HHHHHHHHHHhCCEEeHHHHHHhhCC----ChHHHHHHHHHHHhCCceEEEE
Confidence            456788888877 6999999999999    9999999999999999999853

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=88.28  E-value=1.1  Score=40.69  Aligned_cols=75  Identities=19%  Similarity=0.250  Sum_probs=44.9

Q ss_pred             CCCcceEEEecCCccHHHHHHH--------HHC--------CCCeEEEeechH-----HHHhCCC-------CCC--ceE
Q 024046          195 FQNVERLVDVGGGFGVTLSMIT--------SKY--------PQIKAVNFDLPH-----VVQDAPS-------YAG--VEH  244 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~--------~~~--------P~l~~~~~Dlp~-----v~~~a~~-------~~r--i~~  244 (273)
                      .++.-+|+|+||.+|..+..+.        +++        |++.++.=|+|.     +......       .+.  +.-
T Consensus        14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g   93 (334)
T PF03492_consen   14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG   93 (334)
T ss_dssp             TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred             CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence            4567899999999999766433        233        456677778976     1111111       123  577


Q ss_pred             EEcccCCC-CCCC--CEEEecccccccC
Q 024046          245 VGGNMFES-VPEG--DAILMKVGNFENY  269 (273)
Q Consensus       245 ~~gD~f~~-~p~~--D~~~l~~vLHd~~  269 (273)
                      ++|.||.. +|.+  |+++.+..||--+
T Consensus        94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS  121 (334)
T PF03492_consen   94 VPGSFYGRLFPSNSVHFGHSSYALHWLS  121 (334)
T ss_dssp             EES-TTS--S-TT-EEEEEEES-TTB-S
T ss_pred             cCchhhhccCCCCceEEEEEechhhhcc
Confidence            89999996 8876  9999999999655

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>TIGR00498 lexA SOS regulatory protein LexA

Probab=88.27  E-value=0.94  Score=37.69  Aligned_cols=46  Identities=26%  Similarity=0.299  Sum_probs=37.7

Q ss_pred             HHhChhHHHHh----CC-CCCHHHHHHHhCcCCCCC-cchHHHHHHHHhcCCceec
Q 024046           45 IQLGVFEIIAK----AG-ELSAPEIAAQLQAQNVKA-PMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        45 ~elglfd~L~~----~g-~~t~~eLA~~~g~~~~~~-~~~l~rlL~~L~~~gll~~   94 (273)
                      .+..|++.|.+    .| +.|+.|||+.+|+    + +..+.+.|+.|...|+++.
T Consensus         7 ~q~~iL~~l~~~~~~~~~~~~~~ela~~~~~----~s~~tv~~~l~~L~~~g~i~~   58 (199)
T TIGR00498         7 RQQEVLDLIRAHIESTGYPPSIREIARAVGL----RSPSAAEEHLKALERKGYIER   58 (199)
T ss_pred             HHHHHHHHHHHHHHhcCCCCcHHHHHHHhCC----CChHHHHHHHHHHHHCCCEec
Confidence            34455566653    23 7889999999999    8 8899999999999999996

LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.

>COG1497 Predicted transcriptional regulator [Transcription]

Probab=88.26  E-value=0.73  Score=39.46  Aligned_cols=95  Identities=18%  Similarity=0.283  Sum_probs=61.7

Q ss_pred             hhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhhcCCCCCccchhhcc
Q 024046           49 VFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMAL  127 (273)
Q Consensus        49 lfd~L~~~-g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~~~~~~~~~~~~~~~  127 (273)
                      |+-.|... +.....|||+.+|+    .+.++...++-|+..|++++   .+.+.|.+|..+...+.+.- ..++.+...
T Consensus        15 IL~ei~~~qp~v~q~eIA~~lgi----T~QaVsehiK~Lv~eG~i~~---~gR~~Y~iTkkG~e~l~~~~-~dlr~f~~e   86 (260)
T COG1497          15 ILSEIAVRQPRVKQKEIAKKLGI----TLQAVSEHIKELVKEGLIEK---EGRGEYEITKKGAEWLLEQL-SDLRRFSEE   86 (260)
T ss_pred             HHHHHHHhCCCCCHHHHHHHcCC----CHHHHHHHHHHHHhccceee---cCCeeEEEehhHHHHHHHHH-HHHHHHHHH
Confidence            33344433 57899999999999    99999999999999999997   35679999999864433321 123333322


Q ss_pred             c-CChhHHHHhhhHHHH-HhcCCCcc
Q 024046          128 P-LDKVFMESWLGLKDA-VMEGGIPF  151 (273)
Q Consensus       128 ~-~~~~~~~~~~~L~e~-l~~g~~~~  151 (273)
                      . ..-.+...|..++.. +++|...+
T Consensus        87 v~~~l~~~~vw~AIA~edI~~Gd~V~  112 (260)
T COG1497          87 VELVLDYVMVWTAIAKEDIKEGDTVY  112 (260)
T ss_pred             HHHHHhhHHHHHHhhHhhhccCCEEE
Confidence            1 011123466665543 55555443

>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]

Probab=87.31  E-value=0.92  Score=38.26  Aligned_cols=42  Identities=36%  Similarity=0.454  Sum_probs=35.5

Q ss_pred             hhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           49 VFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        49 lfd~L~~~-g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      |.+.|... .+.|++|+|+++|+    +.--.+|.|.+|++.|+++.
T Consensus       163 i~~~~~~~~~~~Taeela~~~gi----SRvTaRRYLeyl~~~~~l~a  205 (224)
T COG4565         163 VREALKEPDQELTAEELAQALGI----SRVTARRYLEYLVSNGILEA  205 (224)
T ss_pred             HHHHHhCcCCccCHHHHHHHhCc----cHHHHHHHHHHHHhcCeeeE
Confidence            44455532 39999999999999    88899999999999999985

>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress

Probab=87.01  E-value=2.6  Score=29.70  Aligned_cols=52  Identities=12%  Similarity=0.034  Sum_probs=41.4

Q ss_pred             CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhh
Q 024046           57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV  113 (273)
Q Consensus        57 g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~  113 (273)
                      .|....+||+.+++    ++.-++-.|..|..+|+++..- ...+.|..|..+..++
T Consensus        22 ~PVgSk~ia~~l~~----s~aTIRN~M~~Le~lGlve~~p-~~s~GriPT~~aYr~~   73 (78)
T PF03444_consen   22 EPVGSKTIAEELGR----SPATIRNEMADLEELGLVESQP-HPSGGRIPTDKAYRAL   73 (78)
T ss_pred             CCcCHHHHHHHHCC----ChHHHHHHHHHHHHCCCccCCC-CCCCCCCcCHHHHHHH
Confidence            39999999999999    9999999999999999998410 1235677888775443

Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent

>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]

Probab=86.59  E-value=1.1  Score=36.64  Aligned_cols=44  Identities=23%  Similarity=0.311  Sum_probs=40.3

Q ss_pred             hChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        47 lglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      ..|+++|.+.|.+|=++||..+|+    ...-++++|.+|...|++..
T Consensus        21 ~~v~~~l~~kge~tDeela~~l~i----~~~~vrriL~~L~e~~li~~   64 (176)
T COG1675          21 VLVVDALLEKGELTDEELAELLGI----KKNEVRRILYALYEDGLISY   64 (176)
T ss_pred             hHHHHHHHhcCCcChHHHHHHhCc----cHHHHHHHHHHHHhCCceEE
Confidence            457888888778999999999999    99999999999999999985

>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional

Probab=86.48  E-value=0.94  Score=39.41  Aligned_cols=47  Identities=17%  Similarity=0.293  Sum_probs=42.4

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      .+..|.+.|.+.|..++.|||+.+++    ++.-++|-|..|...|++.+.
T Consensus         6 R~~~Il~~l~~~~~~~~~ela~~l~v----S~~TiRRdL~~Le~~g~l~r~   52 (252)
T PRK10906          6 RHDAIIELVKQQGYVSTEELVEHFSV----SPQTIRRDLNDLAEQNKILRH   52 (252)
T ss_pred             HHHHHHHHHHHcCCEeHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe
Confidence            34557889988889999999999999    999999999999999999873

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=86.36  E-value=0.56  Score=45.25  Aligned_cols=55  Identities=15%  Similarity=0.217  Sum_probs=40.5

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCC--------CeEEEeec-hHHHHhCCCC----C--CceEEEcccCC
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQ--------IKAVNFDL-PHVVQDAPSY----A--GVEHVGGNMFE  251 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~--------l~~~~~Dl-p~v~~~a~~~----~--ri~~~~gD~f~  251 (273)
                      ...+|+|.|||+|.++.+++++.+.        +..+++|+ |.++..+...    .  .+++..+|+..
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~  100 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLS  100 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccc
Confidence            4569999999999999999998863        45688898 6666655421    2  46667777664

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF02295 z-alpha: Adenosine deaminase z-alpha domain; InterPro: IPR000607 Double-stranded RNA-specific adenosine deaminase (3

Probab=86.32  E-value=0.59  Score=31.87  Aligned_cols=60  Identities=17%  Similarity=0.207  Sum_probs=44.8

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecCh
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP  107 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~  107 (273)
                      .+-.|++.|...|+.++-.+|...|++  ++...+.+.|.-|...|.+...+ +.+-.|++++
T Consensus         5 ~ee~Il~~L~~~g~~~a~~ia~~~~L~--~~kk~VN~~LY~L~k~g~v~k~~-~~PP~W~l~~   64 (66)
T PF02295_consen    5 LEEKILDFLKELGGSTATAIAKALGLS--VPKKEVNRVLYRLEKQGKVCKEG-GTPPKWSLTE   64 (66)
T ss_dssp             HHHHHHHHHHHHTSSEEEHHHHHHHHT--S-HHHHHHHHHHHHHTTSEEEEC-SSSTEEEE-H
T ss_pred             HHHHHHHHHHhcCCccHHHHHHHhCcc--hhHHHHHHHHHHHHHCCCEeeCC-CCCCceEecc
Confidence            566788899988877888888888871  13789999999999999998753 2445676664

5 from EC) converts multiple adenosines to inosines and creates I/U mismatched base pairs in double-helical RNA substrates without apparent sequence specificity. DRADA has been found to modify adenosines in AU-rich regions more frequently, probably due to the relative ease of melting A/U base pairs compared to G/C base pairs. The protein functions to modify viral RNA genomes, and may be responsible for hypermutation of certain negative-stranded viruses. DRADA edits the mRNAs for the glutamate receptor subunits by site-selective adenosine deamination. The DRADA repeat is also found in viral E3 proteins, which contain a double-stranded RNA-binding domain.; GO: 0003723 RNA binding, 0003726 double-stranded RNA adenosine deaminase activity; PDB: 1OYI_A 3EYI_A 2L4M_A 2HEO_D 1J75_A 1SFU_B 3IRR_B 2ACJ_C 3F22_B 2L54_A ....

>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional

Probab=86.19  E-value=0.96  Score=39.42  Aligned_cols=47  Identities=19%  Similarity=0.251  Sum_probs=42.5

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      -+..|.+.|.+.|..++.|||+.+++    ++.-++|=|..|...|++.+.
T Consensus         6 R~~~Il~~L~~~~~v~v~eLa~~l~V----S~~TIRRDL~~Le~~g~l~r~   52 (256)
T PRK10434          6 RQAAILEYLQKQGKTSVEELAQYFDT----TGTTIRKDLVILEHAGTVIRT   52 (256)
T ss_pred             HHHHHHHHHHHcCCEEHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEE
Confidence            34568899999889999999999999    999999999999999999873

>smart00531 TFIIE Transcription initiation factor IIE

Probab=85.82  E-value=1.1  Score=35.53  Aligned_cols=42  Identities=19%  Similarity=0.378  Sum_probs=36.9

Q ss_pred             hChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCce
Q 024046           47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVL   92 (273)
Q Consensus        47 lglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll   92 (273)
                      .-|+++|...|.+|-++||+.+|+    +...++++|..|..-+++
T Consensus         4 ~~v~d~L~~~~~~~dedLa~~l~i----~~n~vRkiL~~L~ed~~~   45 (147)
T smart00531        4 FLVLDALMRNGCVTEEDLAELLGI----KQKQLRKILYLLYDEKLI   45 (147)
T ss_pred             EeehHHHHhcCCcCHHHHHHHhCC----CHHHHHHHHHHHHhhhcc
Confidence            347888887789999999999999    999999999999995554

>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional

Probab=85.55  E-value=1.4  Score=41.94  Aligned_cols=70  Identities=9%  Similarity=0.105  Sum_probs=57.2

Q ss_pred             HHHhChhHHHHh-CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhhcCCCC
Q 024046           44 AIQLGVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDG  118 (273)
Q Consensus        44 a~elglfd~L~~-~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~~~~~~  118 (273)
                      ..+..|+..|.. .+..+.++||+.+|+    +...+.+.+..|.+.|+++... .....|.+|+.++..+.+..+
T Consensus         6 ~~e~~iL~~l~~~~~~~~~~~la~~~~~----~~~~v~~~~~~L~~kg~v~~~~-~~~~~~~LT~eG~~~~~~G~P   76 (494)
T PTZ00326          6 LEENTILSKLESENEIVNSLALAESLNI----DHQKVVGAIKSLESANYITTEM-KKSNTWTLTEEGEDYLKNGSP   76 (494)
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHcCC----CHHHHHHHHHHHHhCCCEEEEE-EEEEEEEECHHHHHHHHcCCH
Confidence            455667788876 358999999999999    9999999999999999998643 244689999999887777543

>PF13730 HTH_36: Helix-turn-helix domain

Probab=85.43  E-value=1.1  Score=28.85  Aligned_cols=29  Identities=17%  Similarity=0.278  Sum_probs=27.6

Q ss_pred             CHHHHHHHhCcCCCCCcchHHHHHHHHhcCCce
Q 024046           60 SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVL   92 (273)
Q Consensus        60 t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll   92 (273)
                      |.+.||+.+|+    +.+.+.+.++.|+..|++
T Consensus        27 S~~~la~~~g~----s~~Tv~~~i~~L~~~G~I   55 (55)
T PF13730_consen   27 SQETLAKDLGV----SRRTVQRAIKELEEKGLI   55 (55)
T ss_pred             CHHHHHHHHCc----CHHHHHHHHHHHHHCcCC
Confidence            89999999999    999999999999999985

>TIGR02147 Fsuc_second hypothetical protein, TIGR02147

Probab=85.41  E-value=1.7  Score=38.33  Aligned_cols=47  Identities=13%  Similarity=0.118  Sum_probs=39.3

Q ss_pred             CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhc
Q 024046           58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS  109 (273)
Q Consensus        58 ~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s  109 (273)
                      ..++++||+.|+-  +++...++.-|..|...|++++   .++|.|..|..+
T Consensus       137 ~~~~~~ia~~l~p--~is~~ev~~sL~~L~~~glikk---~~~g~y~~t~~~  183 (271)
T TIGR02147       137 ADDPEELAKRCFP--KISAEQVKESLDLLERLGLIKK---NEDGFYKQTDKA  183 (271)
T ss_pred             CCCHHHHHHHhCC--CCCHHHHHHHHHHHHHCCCeeE---CCCCcEEeecce
Confidence            4479999999991  2288999999999999999998   467899988764

This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=85.36  E-value=2  Score=39.19  Aligned_cols=97  Identities=16%  Similarity=0.280  Sum_probs=55.2

Q ss_pred             CcchHHHHHHHHHhcchhhHHHHHhhcccCCCcceEEEecCCccHHHHHHHHH----CC----CCeEEEeec-hHHHHhC
Q 024046          166 NPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSK----YP----QIKAVNFDL-PHVVQDA  236 (273)
Q Consensus       166 ~~~~~~~f~~am~~~~~~~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~----~P----~l~~~~~Dl-p~v~~~a  236 (273)
                      .|+..+.|-+..+-+-.   +.| ..+. .+.+-.+|++|.|+|.++.-+++.    +|    .++..+++. |...+.-
T Consensus        51 Apels~lFGella~~~~---~~w-q~~g-~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Q  125 (370)
T COG1565          51 APELSQLFGELLAEQFL---QLW-QELG-RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQ  125 (370)
T ss_pred             chhHHHHHHHHHHHHHH---HHH-HHhc-CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHH
Confidence            46777778876643321   122 2222 445678999999999988776655    56    467777776 6554432


Q ss_pred             CCC-CCc-eEEE-cccCCCCCCC-CEEEecccccc
Q 024046          237 PSY-AGV-EHVG-GNMFESVPEG-DAILMKVGNFE  267 (273)
Q Consensus       237 ~~~-~ri-~~~~-gD~f~~~p~~-D~~~l~~vLHd  267 (273)
                      ++. ..+ ..+. ..+++..|+. +.++++|=|-|
T Consensus       126 k~~L~~~~~~~~~~~~~e~~p~~~~~i~~~NElfD  160 (370)
T COG1565         126 KETLKATEDLIRWVEWVEDLPKKFPGIVVSNELFD  160 (370)
T ss_pred             HHHHhccccchhHHHHHHhccccCceEEEechhhc
Confidence            211 111 1222 2333456665 66666665544

>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional

Probab=85.35  E-value=1.2  Score=39.19  Aligned_cols=47  Identities=9%  Similarity=0.182  Sum_probs=42.7

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      ....|.+.|...|..++.|||+.+|+    +++-++|=|..|...|++.+.
T Consensus        18 R~~~Il~~L~~~~~vtv~eLa~~l~V----S~~TIRRDL~~Le~~G~l~r~   64 (269)
T PRK09802         18 RREQIIQRLRQQGSVQVNDLSALYGV----STVTIRNDLAFLEKQGIAVRA   64 (269)
T ss_pred             HHHHHHHHHHHcCCEeHHHHHHHHCC----CHHHHHHHHHHHHhCCCeEEE
Confidence            44568889998889999999999999    999999999999999999974

>PF05732 RepL: Firmicute plasmid replication protein (RepL); InterPro: IPR008813 This entry consists of proteins thought to be involved in plasmid replication

Probab=85.34  E-value=1.2  Score=36.20  Aligned_cols=44  Identities=20%  Similarity=0.286  Sum_probs=39.9

Q ss_pred             CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChh
Q 024046           58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV  108 (273)
Q Consensus        58 ~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~  108 (273)
                      -.|..+||+.+|+    +.+-+.|.+..|...+++.+   ...|.|.++|.
T Consensus        75 ~~t~~~ia~~l~i----S~~Tv~r~ik~L~e~~iI~k---~~~G~Y~iNP~  118 (165)
T PF05732_consen   75 VATQKEIAEKLGI----SKPTVSRAIKELEEKNIIKK---IRNGAYMINPN  118 (165)
T ss_pred             EeeHHHHHHHhCC----CHHHHHHHHHHHHhCCcEEE---ccCCeEEECcH
Confidence            5689999999999    99999999999999999998   36689999985

; GO: 0006260 DNA replication, 0006276 plasmid maintenance

>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues

Probab=85.24  E-value=1.8  Score=35.53  Aligned_cols=56  Identities=16%  Similarity=0.287  Sum_probs=41.8

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCC---------CCceEEEcccCC
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY---------AGVEHVGGNMFE  251 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~---------~ri~~~~gD~f~  251 (273)
                      ++...||-+|||-=...-.+...+|+++.+=+|+|+|++.-++.         .+.++++.|+.+
T Consensus        77 ~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~  141 (183)
T PF04072_consen   77 PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRD  141 (183)
T ss_dssp             TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTS
T ss_pred             CCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccc
Confidence            45669999999999999999999999999999999998754431         236789999996

It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....

>PRK10411 DNA-binding transcriptional activator FucR; Provisional

Probab=85.10  E-value=1.7  Score=37.50  Aligned_cols=45  Identities=18%  Similarity=0.248  Sum_probs=40.7

Q ss_pred             HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        46 elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      +..|.+.|.+.+..+++|||+.+|+    +++-++|-|..|...|.+.+
T Consensus         6 ~~~Il~~l~~~~~~~~~eLa~~l~V----S~~TiRRdL~~L~~~~~l~r   50 (240)
T PRK10411          6 QQAIVDLLLNHTSLTTEALAEQLNV----SKETIRRDLNELQTQGKILR   50 (240)
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence            3457888888789999999999999    99999999999999999986

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=84.58  E-value=1.1  Score=41.33  Aligned_cols=79  Identities=18%  Similarity=0.408  Sum_probs=53.1

Q ss_pred             HHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec---hHHHHhCCC-------------CCCceEEEcccCC
Q 024046          188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL---PHVVQDAPS-------------YAGVEHVGGNMFE  251 (273)
Q Consensus       188 il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl---p~v~~~a~~-------------~~ri~~~~gD~f~  251 (273)
                      +.+.+. ......++|+|+|.|.....++...-.-..+++++   |.-++....             ...++++.|+|..
T Consensus       184 i~dEl~-~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~  262 (419)
T KOG3924|consen  184 IVDELK-LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLD  262 (419)
T ss_pred             HHHHhc-cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCC
Confidence            334433 55678999999999997776665544444455554   554443321             1458999999997


Q ss_pred             C------CCCCCEEEecccccc
Q 024046          252 S------VPEGDAILMKVGNFE  267 (273)
Q Consensus       252 ~------~p~~D~~~l~~vLHd  267 (273)
                      +      +++++++++.++..+
T Consensus       263 ~~~v~eI~~eatvi~vNN~~Fd  284 (419)
T KOG3924|consen  263 PKRVTEIQTEATVIFVNNVAFD  284 (419)
T ss_pred             HHHHHHHhhcceEEEEecccCC
Confidence            3      456799999998765

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.44  E-value=1.1  Score=35.65  Aligned_cols=64  Identities=20%  Similarity=0.224  Sum_probs=41.8

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcccCC
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFE  251 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gD~f~  251 (273)
                      +.++..++ -.+..+++|+|.|.|....+.++.. -...++++| |=.+.-++-       ..+.+|..-|+|+
T Consensus        62 ~nVLSll~-~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK  133 (199)
T KOG4058|consen   62 ENVLSLLR-GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWK  133 (199)
T ss_pred             HHHHHHcc-CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhh
Confidence            34555554 3345899999999999888877765 345788998 444443331       1456666666665

>PRK01381 Trp operon repressor; Provisional

Probab=83.98  E-value=5.1  Score=29.57  Aligned_cols=39  Identities=26%  Similarity=0.319  Sum_probs=30.5

Q ss_pred             HHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHH
Q 024046           43 AAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLL   86 (273)
Q Consensus        43 ~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L   86 (273)
                      .+.+++|+..|.. |++|-.|||+.+|+    +-..+.|.-+.|
T Consensus        41 l~~R~~I~~~L~~-g~~sQREIa~~lGv----SiaTITRgsn~L   79 (99)
T PRK01381         41 LGTRVRIVEELLR-GELSQREIKQELGV----GIATITRGSNSL   79 (99)
T ss_pred             HHHHHHHHHHHHc-CCcCHHHHHHHhCC----ceeeehhhHHHh
Confidence            3678999999987 79999999999999    555555544444

>PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional

Probab=83.97  E-value=1.7  Score=39.04  Aligned_cols=56  Identities=13%  Similarity=0.160  Sum_probs=43.9

Q ss_pred             HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCc-eeccccCCCcceecChh
Q 024046           46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRV-LECSVSGGERLYALNPV  108 (273)
Q Consensus        46 elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gl-l~~~~~~~~~~y~lt~~  108 (273)
                      ...|.+.|.+..+.+.++||+.+|+    +...+.+.++.|...|+ +...   ....|.+.+.
T Consensus         6 ~~~il~~L~~~~~~s~~~LA~~lgv----sr~tV~~~l~~L~~~G~~i~~~---~~~Gy~L~~~   62 (319)
T PRK11886          6 MLQLLSLLADGDFHSGEQLGEELGI----SRAAIWKHIQTLEEWGLDIFSV---KGKGYRLAEP   62 (319)
T ss_pred             HHHHHHHHHcCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCceEEe---cCCeEEecCc
Confidence            4567788887458999999999999    99999999999999999 5431   2235776543

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=83.81  E-value=4.7  Score=34.30  Aligned_cols=65  Identities=22%  Similarity=0.359  Sum_probs=51.5

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCC-----CCceEEEcccCC---CCCCC--CEEE
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-----AGVEHVGGNMFE---SVPEG--DAIL  260 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~-----~ri~~~~gD~f~---~~p~~--D~~~  260 (273)
                      .+..+||.||-|-|.....+.++.|+.+.|+---|.|.+..+..     ++|-.+.|-+-.   .+|.+  |-|+
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~  174 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIY  174 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeE
Confidence            67899999999999999999999999999999999999987653     566666654443   46643  5544

>PRK09775 putative DNA-binding transcriptional regulator; Provisional

Probab=83.73  E-value=1.6  Score=41.21  Aligned_cols=54  Identities=28%  Similarity=0.285  Sum_probs=40.6

Q ss_pred             hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhc
Q 024046           49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS  109 (273)
Q Consensus        49 lfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s  109 (273)
                      |...|.+ ||.|+.||++.+|+    +...+.+.|+.|  .|+|........-.|++....
T Consensus         5 ~~~~L~~-g~~~~~eL~~~l~~----sq~~~s~~L~~L--~~~V~~~~~gr~~~Y~l~~~~   58 (442)
T PRK09775          5 LTTLLLQ-GPLSAAELAARLGV----SQATLSRLLAAL--GDQVVRFGKARATRYALLRPL   58 (442)
T ss_pred             HHHHHhc-CCCCHHHHHHHhCC----CHHHHHHHHHHh--hcceeEeccCceEEEEecccc
Confidence            5566776 89999999999999    999999999999  777765322222356665543

>PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus

Probab=83.72  E-value=2.9  Score=28.96  Aligned_cols=42  Identities=17%  Similarity=0.158  Sum_probs=37.7

Q ss_pred             ChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           48 GVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        48 glfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      .|...|+. +..|.++|-+.+|+    +...+...|.-|...|++++
T Consensus         9 ~IL~~ls~-~c~TLeeL~ekTgi----~k~~LlV~LsrL~k~GiI~R   50 (72)
T PF05584_consen    9 KILIILSK-RCCTLEELEEKTGI----SKNTLLVYLSRLAKRGIIER   50 (72)
T ss_pred             HHHHHHHh-ccCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeee
Confidence            45667776 49999999999999    99999999999999999996

>COG0640 ArsR Predicted transcriptional regulators [Transcription]

Probab=83.68  E-value=3  Score=29.59  Aligned_cols=54  Identities=22%  Similarity=0.346  Sum_probs=46.4

Q ss_pred             HHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        38 ~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      ..++....++.++..|.+.++.++.+|+..+++    +...+.+.|..|...|+++..
T Consensus        19 ~~~l~~~~r~~il~~l~~~~~~~~~~l~~~~~~----~~~~v~~hL~~L~~~glv~~~   72 (110)
T COG0640          19 LKALADPTRLEILSLLAEGGELTVGELAEALGL----SQSTVSHHLKVLREAGLVELR   72 (110)
T ss_pred             HHHhCCHHHHHHHHHHHhcCCccHHHHHHHHCC----ChhHHHHHHHHHHHCCCeEEE
Confidence            445556688889989987348899999999999    999999999999999999973

>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4

Probab=83.65  E-value=1.4  Score=30.89  Aligned_cols=35  Identities=17%  Similarity=0.227  Sum_probs=24.2

Q ss_pred             hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHh
Q 024046           49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLV   87 (273)
Q Consensus        49 lfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~   87 (273)
                      ++..|+...|.|+++||.++|.    +...+...|..+-
T Consensus        29 LLr~LA~G~PVt~~~LA~a~g~----~~e~v~~~L~~~p   63 (77)
T PF12324_consen   29 LLRLLAKGQPVTVEQLAAALGW----PVEEVRAALAAMP   63 (77)
T ss_dssp             HHHHHTTTS-B-HHHHHHHHT------HHHHHHHHHH-T
T ss_pred             HHHHHHcCCCcCHHHHHHHHCC----CHHHHHHHHHhCC
Confidence            7788988449999999999999    7777777666654

99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.

>TIGR01321 TrpR trp operon repressor, proteobacterial

Probab=83.61  E-value=4.9  Score=29.38  Aligned_cols=41  Identities=20%  Similarity=0.240  Sum_probs=33.5

Q ss_pred             HHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHh
Q 024046           42 QAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLV   87 (273)
Q Consensus        42 ~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~   87 (273)
                      ..+.+.+|+..|.. +++|-.|||+.+|+    +...+.|+=+.|.
T Consensus        40 ~l~~R~~i~~~Ll~-~~~tQrEIa~~lGi----S~atIsR~sn~lk   80 (94)
T TIGR01321        40 DLGDRIRIVNELLN-GNMSQREIASKLGV----SIATITRGSNNLK   80 (94)
T ss_pred             HHHHHHHHHHHHHh-CCCCHHHHHHHhCC----ChhhhhHHHhhcc
Confidence            34678999998877 68999999999999    8877777666554

This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=83.56  E-value=0.86  Score=38.57  Aligned_cols=63  Identities=17%  Similarity=0.121  Sum_probs=45.4

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCCCCceEEEcccCC-CCCC---C--CEEEecccccccCCC
Q 024046          198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFE-SVPE---G--DAILMKVGNFENYQS  271 (273)
Q Consensus       198 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~~ri~~~~gD~f~-~~p~---~--D~~~l~~vLHd~~~~  271 (273)
                      .-++||||+=+.....   +.++-+.++-+||-.      .++  .+...||++ |+|.   .  |+|.++-||-..|+.
T Consensus        52 ~lrlLEVGals~~N~~---s~~~~fdvt~IDLns------~~~--~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p  120 (219)
T PF11968_consen   52 KLRLLEVGALSTDNAC---STSGWFDVTRIDLNS------QHP--GILQQDFMERPLPKNESEKFDVISLSLVLNFVPDP  120 (219)
T ss_pred             cceEEeecccCCCCcc---cccCceeeEEeecCC------CCC--CceeeccccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence            3689999987554333   245666788888833      123  456899999 8883   2  999999999988864

>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional

Probab=83.48  E-value=2  Score=35.33  Aligned_cols=48  Identities=21%  Similarity=0.351  Sum_probs=43.0

Q ss_pred             HHHhChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           44 AIQLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        44 a~elglfd~L~~~g-~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      -++..|.|.|...| ..|+-+||+++|+    +.+.+.|.|.-|...|.|...
T Consensus         4 ~~~~~i~~~l~~~~~~~~a~~i~k~l~i----~k~~vNr~LY~L~~~~~v~~~   52 (183)
T PHA02701          4 DCASLILTLLSSSGDKLPAKRIAKELGI----SKHEANRCLYRLLESDAVSCE   52 (183)
T ss_pred             hHHHHHHHHHHhcCCCCcHHHHHHHhCc----cHHHHHHHHHHHhhcCcEecC
Confidence            35678999999988 7999999999999    999999999999999999753

>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A)

Probab=83.48  E-value=1.5  Score=32.34  Aligned_cols=47  Identities=21%  Similarity=0.246  Sum_probs=38.9

Q ss_pred             HHHhChhHHHHh----CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           44 AIQLGVFEIIAK----AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        44 a~elglfd~L~~----~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      .+.-.|++.|..    ..++++++|++.+++    ++..++..++.|...|.+..
T Consensus        47 ~~~~~Vl~~i~~~~~~~~Gv~v~~I~~~l~~----~~~~v~~al~~L~~eG~IYs   97 (102)
T PF08784_consen   47 PLQDKVLNFIKQQPNSEEGVHVDEIAQQLGM----SENEVRKALDFLSNEGHIYS   97 (102)
T ss_dssp             HHHHHHHHHHHC----TTTEEHHHHHHHSTS-----HHHHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHHHHHhcCCCCCcccHHHHHHHhCc----CHHHHHHHHHHHHhCCeEec
Confidence            345667778776    137999999999999    99999999999999999964

RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=83.46  E-value=3.1  Score=34.59  Aligned_cols=42  Identities=19%  Similarity=0.310  Sum_probs=34.0

Q ss_pred             HHhhcccCCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeec
Q 024046          188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL  229 (273)
Q Consensus       188 il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl  229 (273)
                      |-+.|.-+.+..+|+|+|+-.|..+-...++. |+-.+.++|+
T Consensus        60 indKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDl  102 (232)
T KOG4589|consen   60 INDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDL  102 (232)
T ss_pred             ehhhccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEee
Confidence            33455446678999999999999998777665 9988999998

>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities

Probab=83.24  E-value=2.1  Score=28.61  Aligned_cols=34  Identities=24%  Similarity=0.298  Sum_probs=30.0

Q ss_pred             CC-CHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           58 EL-SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        58 ~~-t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      .+ |..+||+..|+    +..-+++.|+.|.+.|+++..
T Consensus        23 ~lps~~~la~~~~v----sr~tvr~al~~L~~~g~i~~~   57 (64)
T PF00392_consen   23 RLPSERELAERYGV----SRTTVREALRRLEAEGLIERR   57 (64)
T ss_dssp             BE--HHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred             EeCCHHHHHHHhcc----CCcHHHHHHHHHHHCCcEEEE
Confidence            66 89999999999    999999999999999999874

The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....

>PF13518 HTH_28: Helix-turn-helix domain

Probab=83.20  E-value=2.2  Score=26.79  Aligned_cols=38  Identities=21%  Similarity=0.299  Sum_probs=31.4

Q ss_pred             ChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCc
Q 024046           48 GVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRV   91 (273)
Q Consensus        48 glfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gl   91 (273)
                      .+...+.+ |. |+.++|+.+|+    +...+.+|++.....|+
T Consensus         4 ~iv~~~~~-g~-s~~~~a~~~gi----s~~tv~~w~~~y~~~G~   41 (52)
T PF13518_consen    4 QIVELYLE-GE-SVREIAREFGI----SRSTVYRWIKRYREGGI   41 (52)
T ss_pred             HHHHHHHc-CC-CHHHHHHHHCC----CHhHHHHHHHHHHhcCH
Confidence            34555554 44 99999999999    99999999999998885

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=82.95  E-value=1.5  Score=36.92  Aligned_cols=55  Identities=13%  Similarity=0.235  Sum_probs=32.1

Q ss_pred             CcceEEEecCCccHHH---HHHHHHC-CCCeEEEeec--hHHHHhCCCC----CCceEEEcccCC
Q 024046          197 NVERLVDVGGGFGVTL---SMITSKY-PQIKAVNFDL--PHVVQDAPSY----AGVEHVGGNMFE  251 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~---~~l~~~~-P~l~~~~~Dl--p~v~~~a~~~----~ri~~~~gD~f~  251 (273)
                      ++.+|+++|--+|.-+   ..+++.+ ++.+++++|+  +..-..+.+.    +||+++.||--.
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d   96 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSID   96 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSS
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCC
Confidence            5689999997666644   4556666 8889999998  3332333333    899999999875

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=82.35  E-value=4.9  Score=29.91  Aligned_cols=66  Identities=21%  Similarity=0.331  Sum_probs=40.9

Q ss_pred             EEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhCCCC---CC---ceEEEcccCC---CCCC--C-CEEEeccccc
Q 024046          201 LVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY---AG---VEHVGGNMFE---SVPE--G-DAILMKVGNF  266 (273)
Q Consensus       201 vvDVGGG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~~---~r---i~~~~gD~f~---~~p~--~-D~~~l~~vLH  266 (273)
                      ++|+|||.|... .+....+. ...+++|. +..+..+...   ..   +.+..+|...   +++.  . |++ .....+
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~  129 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL  129 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence            999999999977 44444443 36677887 5445443221   11   6788888775   4443  3 888 555544


Q ss_pred             cc
Q 024046          267 EN  268 (273)
Q Consensus       267 d~  268 (273)
                      .+
T Consensus       130 ~~  131 (257)
T COG0500         130 HL  131 (257)
T ss_pred             hc
Confidence            43

>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]

Probab=82.25  E-value=1.9  Score=37.55  Aligned_cols=46  Identities=22%  Similarity=0.329  Sum_probs=42.5

Q ss_pred             HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        46 elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      +-.|.+.|.+.|..+++|||+.+++    ++.-++|=|+.|...|++.+.
T Consensus         7 ~~~Il~~l~~~g~v~v~eLa~~~~V----S~~TIRRDL~~Le~~g~l~R~   52 (253)
T COG1349           7 HQKILELLKEKGKVSVEELAELFGV----SEMTIRRDLNELEEQGLLLRV   52 (253)
T ss_pred             HHHHHHHHHHcCcEEHHHHHHHhCC----CHHHHHHhHHHHHHCCcEEEE
Confidence            3458889999899999999999999    999999999999999999984

>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms

Probab=81.66  E-value=1.6  Score=27.10  Aligned_cols=30  Identities=33%  Similarity=0.441  Sum_probs=20.4

Q ss_pred             hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHH
Q 024046           49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLR   84 (273)
Q Consensus        49 lfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~   84 (273)
                      +...+.+ | .|+.+||+.+|+    +..-+.|+|+
T Consensus        14 i~~l~~~-G-~si~~IA~~~gv----sr~TvyR~l~   43 (45)
T PF02796_consen   14 IKELYAE-G-MSIAEIAKQFGV----SRSTVYRYLN   43 (45)
T ss_dssp             HHHHHHT-T---HHHHHHHTTS-----HHHHHHHHC
T ss_pred             HHHHHHC-C-CCHHHHHHHHCc----CHHHHHHHHh
Confidence            4445544 5 999999999999    8888877763

Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....

>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed

Probab=81.64  E-value=2.9  Score=39.12  Aligned_cols=44  Identities=20%  Similarity=0.138  Sum_probs=37.7

Q ss_pred             CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecCh
Q 024046           57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP  107 (273)
Q Consensus        57 g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~  107 (273)
                      .|.|.++|++.+++    +++.++++|+.|...|++.+   .+++.|.+..
T Consensus       309 ~~~t~~~La~~l~~----~~~~v~~iL~~L~~agLI~~---~~~g~~~l~r  352 (412)
T PRK04214        309 KALDVDEIRRLEPM----GYDELGELLCELARIGLLRR---GERGQWVLAR  352 (412)
T ss_pred             CCCCHHHHHHHhCC----CHHHHHHHHHHHHhCCCeEe---cCCCceEecC
Confidence            38999999999999    99999999999999999986   3445675553

>PRK00135 scpB segregation and condensation protein B; Reviewed

Probab=81.00  E-value=3.7  Score=34.06  Aligned_cols=57  Identities=23%  Similarity=0.219  Sum_probs=42.1

Q ss_pred             hChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecccc----CCCcceecChhch
Q 024046           47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS----GGERLYALNPVSK  110 (273)
Q Consensus        47 lglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~----~~~~~y~lt~~s~  110 (273)
                      +.++..|+..+|.|-.||++..|+    +.   ..+++-|...|++.+.+.    +.+-.|.+|+...
T Consensus        93 LEtLaiIay~qPiTr~eI~~irGv----~~---~~ii~~L~~~gLI~e~gr~~~~Grp~ly~tT~~F~  153 (188)
T PRK00135         93 LEVLAIIAYKQPITRIEIDEIRGV----NS---DGALQTLLAKGLIKEVGRKEVPGRPILYGTTDEFL  153 (188)
T ss_pred             HHHHHHHHHcCCcCHHHHHHHHCC----CH---HHHHHHHHHCCCeEEcCcCCCCCCCeeeehhHHHH
Confidence            346777877789999999999999    65   789999999999986321    1223466666543

>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C

Probab=80.73  E-value=1.9  Score=27.02  Aligned_cols=41  Identities=15%  Similarity=0.200  Sum_probs=24.0

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCc
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRV   91 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gl   91 (273)
                      .++.+...+.+  +.|..+||+.+|+    +..-+.++++.....|+
T Consensus         6 ~R~~ii~l~~~--G~s~~~ia~~lgv----s~~Tv~~w~kr~~~~G~   46 (50)
T PF13384_consen    6 RRAQIIRLLRE--GWSIREIAKRLGV----SRSTVYRWIKRYREEGL   46 (50)
T ss_dssp             ----HHHHHHH--T--HHHHHHHHTS-----HHHHHHHHT-------
T ss_pred             HHHHHHHHHHC--CCCHHHHHHHHCc----CHHHHHHHHHHcccccc
Confidence            45566767766  6999999999999    99999999988776663

>PF00126 HTH_1: Bacterial regulatory helix-turn-helix protein, lysR family; InterPro: IPR000847 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif

Probab=80.66  E-value=3.8  Score=26.95  Aligned_cols=55  Identities=22%  Similarity=0.224  Sum_probs=42.0

Q ss_pred             HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHh---cCCceeccccCCCcceecChhch
Q 024046           46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLV---SHRVLECSVSGGERLYALNPVSK  110 (273)
Q Consensus        46 elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~---~~gll~~~~~~~~~~y~lt~~s~  110 (273)
                      ++.+|.++.+.  .++..-|+.+++    ++..+.+.++.|.   ..-+|++    ..+.+.+|+.++
T Consensus         3 ~l~~f~~v~~~--gs~~~AA~~l~i----s~~~vs~~i~~LE~~lg~~Lf~r----~~~~~~lT~~G~   60 (60)
T PF00126_consen    3 QLRYFLAVAET--GSISAAAEELGI----SQSAVSRQIKQLEEELGVPLFER----SGRGLRLTEAGE   60 (60)
T ss_dssp             HHHHHHHHHHH--SSHHHHHHHCTS----SHHHHHHHHHHHHHHHTS-SEEE----CSSSEEE-HHHH
T ss_pred             HHHHHHHHHHh--CCHHHHHHHhhc----cchHHHHHHHHHHHHhCCeEEEE----CCCCeeEChhhC
Confidence            45678888884  599999999999    9999999988887   4667876    344588888753

These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family, the lysR family, groups together a range of proteins, including ampR, catM, catR, cynR, cysB, gltC, iciA, ilvY, irgB, lysR, metR, mkaC, mleR, nahR, nhaR, nodD, nolR, oxyR, pssR, rbcR, syrM, tcbR, tfdS and trpI [, , , , ]. The majority of these proteins appear to be transcription activators and most are known to negatively regulate their own expression. All possess a potential HTH DNA-binding motif towards their N-termini.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3T1B_D 3SZP_A 1O7L_C 1B9N_A 1B9M_A 3FZJ_J 3FXR_B 3FXQ_A 3FXU_A 2IJL_B ....

>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family

Probab=80.40  E-value=4.1  Score=31.63  Aligned_cols=48  Identities=19%  Similarity=0.262  Sum_probs=39.3

Q ss_pred             HHHhChhHHHHhCCCCCHHHHHHHh----CcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           44 AIQLGVFEIIAKAGELSAPEIAAQL----QAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        44 a~elglfd~L~~~g~~t~~eLA~~~----g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      ..|+.|...|=..|+.|+.||.+.+    ++    +..-+..+|+-|...|++...
T Consensus         4 ~~E~~VM~vlW~~~~~t~~eI~~~l~~~~~~----~~tTv~T~L~rL~~KG~v~~~   55 (130)
T TIGR02698         4 DAEWEVMRVVWTLGETTSRDIIRILAEKKDW----SDSTIKTLLGRLVDKGCLTTE   55 (130)
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHhhccCC----cHHHHHHHHHHHHHCCceeee
Confidence            3566777787666899999977776    56    788999999999999999863

This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferble copper resistance) of an Enterocuccus faecium plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this model are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI.

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=80.37  E-value=10  Score=33.46  Aligned_cols=89  Identities=17%  Similarity=0.250  Sum_probs=60.8

Q ss_pred             HHHHHHHhcchh----hHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeec-----hHHHHhCCCC--
Q 024046          172 TYHEAMFNHSTI----AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-----PHVVQDAPSY--  239 (273)
Q Consensus       172 ~f~~am~~~~~~----~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-----p~v~~~a~~~--  239 (273)
                      .|..+|--.+++    .+.-|+..++ .....+|++-|.|+|.++..++++- |.=+..-||.     .++.+..+++  
T Consensus        77 LWTl~LphRTQI~Yt~Dia~I~~~L~-i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi  155 (314)
T KOG2915|consen   77 LWTLALPHRTQILYTPDIAMILSMLE-IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI  155 (314)
T ss_pred             HhhhhccCcceEEecccHHHHHHHhc-CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC
Confidence            344455555553    2455677777 7788999999999999999999996 5556677776     2233333333  


Q ss_pred             -CCceEEEcccCCC-CC--C--CCEEEe
Q 024046          240 -AGVEHVGGNMFES-VP--E--GDAILM  261 (273)
Q Consensus       240 -~ri~~~~gD~f~~-~p--~--~D~~~l  261 (273)
                       +.+++..-|.-.. ++  +  +|+|+|
T Consensus       156 ~~~vt~~hrDVc~~GF~~ks~~aDaVFL  183 (314)
T KOG2915|consen  156 GDNVTVTHRDVCGSGFLIKSLKADAVFL  183 (314)
T ss_pred             CcceEEEEeecccCCccccccccceEEE
Confidence             6788888887662 33  2  388876

>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional

Probab=80.33  E-value=1.5  Score=36.32  Aligned_cols=46  Identities=15%  Similarity=0.041  Sum_probs=41.7

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      -+..|.+.|...|..++.+||+.+|+    ++.-++|=|..|...|++.+
T Consensus         8 R~~~Il~~l~~~~~~~~~~La~~~~v----S~~TiRRDl~~L~~~g~~~r   53 (185)
T PRK04424          8 RQKALQELIEENPFITDEELAEKFGV----SIQTIRLDRMELGIPELRER   53 (185)
T ss_pred             HHHHHHHHHHHCCCEEHHHHHHHHCc----CHHHHHHHHHHHhcchHHHH
Confidence            34457888998889999999999999    99999999999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	273
1kyw_A	365	Crystal Structure Analysis Of Caffeic Acid5-Hydroxy		2e-74
3reo_A	368	Monolignol O-Methyltransferase (Momt) Length = 368		8e-73
3p9c_A	364	Crystal Structure Of Perennial Ryegrass Lpomt1 Boun		3e-66
1fp1_D	372	Crystal Structure Analysis Of Chalcone O-Methyltran		3e-50
1fpq_A	372	Crystal Structure Analysis Of Selenomethionine Subs		5e-41
1fp2_A	352	Crystal Structure Analysis Of Isoflavone O-Methyltr		2e-20
2qyo_A	357	Crystal Structure Of Isoflavone O-Methyltransferase		2e-19
1fpx_A	352	Crystal Structure Analysis Of Selenomethionine Subs		1e-17
1zgj_A	354	Crystal Structure Of Isoflavanone 4'-O-Methyltransf		1e-12
1zg3_A	358	Crystal Structure Of The Isoflavanone 4'-O-Methyltr		1e-12
1zga_A	357	Crystal Structure Of Isoflavanone 4'-o-methyltransf		1e-12
4a6d_A	353	Crystal Structure Of Human N-Acetylserotonin Methyl		1e-06
3gwz_A	369	Structure Of The Mitomycin 7-O-Methyltransferase Mm		1e-06
1x19_A	359	Crystal Structure Of Bchu Involved In Bacteriochlor		3e-05
2ip2_A	334	Structure Of The Pyocyanin Biosynthetic Protein Phz		1e-04
1tw2_A	360	Crystal Structure Of Carminomycin-4-O-Methyltransfe		2e-04

>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In Complex With 5- Hydroxyconiferaldehyde Length = 365

Iteration: 1
 Score =  275 bits (703), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 133/243 (54%), Positives = 173/243 (71%), Gaps = 8/243 (3%)
Query: 28  AMQLAMGVVLPMATQAAIQLGVFEIIAKAG---ELSAPEIAAQLQAQNVKAPMMLDRMLR 84
           AMQLA   VLPM  ++A++L + EIIAKAG   ++S  EIA+QL   N  AP+MLDRMLR
Sbjct: 23  AMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLR 82
Query: 85  LLVSHRVLECSVSGGE-----RLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLG 139
           LL  + +L CSV   +     RLY L  V+KY V N+DG S+     +  DKV MESW  
Sbjct: 83  LLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNEDGVSISALNLMNQDKVLMESWYH 142
Query: 140 LKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVE 199
           LKDAV++GGIPFN+ +GM  FEY   +PRFN+ +++ M +HSTI M++ILE Y GF+ ++
Sbjct: 143 LKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEGLK 202
Query: 200 RLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAI 259
            LVDVGGG G  ++ I SKYP IK +NFDLPHV++DAPSY GVEHVGG+MF S+P+ DA+
Sbjct: 203 SLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAV 262
Query: 260 LMK 262
            MK
Sbjct: 263 FMK 265

>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt) Length = 368

Iteration: 1
 Score =  270 bits (689), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 132/244 (54%), Positives = 177/244 (72%), Gaps = 9/244 (3%)
Query: 28  AMQLAMGVVLPMATQAAIQLGVFEIIAKA----GELSAPEIAAQLQAQNVKAPMMLDRML 83
           AMQLA   VLPMA +AAI+L V EI+AK+    G +S  EIAAQL   N +AP+MLDR+L
Sbjct: 25  AMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVL 84
Query: 84  RLLVSHRVLECSV----SGG-ERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWL 138
           RLL S+ V+  ++    SG  ERLY L PV K+   N+DG SL  F+ L  DKV +E W 
Sbjct: 85  RLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWF 144
Query: 139 GLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNV 198
            LKDA++EGGIPFN+ +GM+IF+Y   + R N+ +++ M ++STI M++ILE Y GF+ +
Sbjct: 145 YLKDAILEGGIPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYNGFEGL 204
Query: 199 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDA 258
             +VDVGGG G   SMI +KYP I A+NFDLPHV+QDAP+++GVEH+GG+MF+ VP+GDA
Sbjct: 205 TTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFDGVPKGDA 264
Query: 259 ILMK 262
           I +K
Sbjct: 265 IFIK 268

>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To Sah Length = 364

Iteration: 1
 Score =  248 bits (633), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 124/243 (51%), Positives = 162/243 (66%), Gaps = 8/243 (3%)
Query: 28  AMQLAMGVVLPMATQAAIQLGVFEIIAKAG--ELSAPEIAAQL-QAQNVKAPMMLDRMLR 84
           A+QLA   VLPM  + AI+LG+ EI+  AG   L+  E+AA+L  A N +AP M+DR+LR
Sbjct: 24  ALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILR 83
Query: 85  LLVSHRVLECSVSGGE-----RLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLG 139
           LL S+ V+ C V  G+     R Y   PV K+   N+DG S+     +  DKV MESW  
Sbjct: 84  LLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYY 143
Query: 140 LKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVE 199
           LKDAV++GGIPFN+ +GM  FEY   +PRFN  ++E M NHS I  +++LE Y GF+ + 
Sbjct: 144 LKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELYHGFEGLG 203
Query: 200 RLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAI 259
            LVDVGGG G T++ I + YP IK VNFDLPHV+ +AP + GV HVGG+MF+ VP GD I
Sbjct: 204 TLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFKEVPSGDTI 263
Query: 260 LMK 262
           LMK
Sbjct: 264 LMK 266

>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase Length = 372

Iteration: 1
 Score =  194 bits (494), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 104/247 (42%), Positives = 149/247 (60%), Gaps = 12/247 (4%)
Query: 28  AMQLAMGVVLPMATQAAIQLGVFEIIAKAGE----LSAPEIAAQLQA--QNVKAPMMLDR 81
           AM L   +V P    AAI L +FEIIAKA      +S  EIA++L A  Q+   P  LDR
Sbjct: 28  AMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDR 87
Query: 82  MLRLLVSHRVLECSVS-----GGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMES 136
           MLRLL S+ VL  +       G ER+Y L+ V KY V ++    L  F         ++ 
Sbjct: 88  MLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQV 147
Query: 137 WLGLKDAVMEGGIP-FNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGF 195
           W+  K+AV++  I  F  VHG+  +E+   + + N+ ++++M +     M+R+LE Y GF
Sbjct: 148 WMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGF 207
Query: 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPE 255
           + +  LVDVGGG G  L +I SKYP IK +NFDLP V+++AP  +G+EHVGG+MF SVP+
Sbjct: 208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQ 267
Query: 256 GDAILMK 262
           GDA+++K
Sbjct: 268 GDAMILK 274

>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Chalcone O- Methyltransferase Length = 372

Iteration: 1
 Score =  164 bits (415), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 100/247 (40%), Positives = 142/247 (57%), Gaps = 12/247 (4%)
Query: 28  AMQLAMGVVLPMATQAAIQLGVFEIIAKA---GELSAP-EIAAQLQA--QNVKAPMMLDR 81
           A  L   +V P    AAI L +FEIIAKA   G   +P EIA++L A  Q+   P  LDR
Sbjct: 28  AXVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFXSPSEIASKLPASTQHSDLPNRLDR 87
Query: 82  MLRLLVSHRVLECSVS-----GGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMES 136
            LRLL S+ VL  +       G ER+Y L+ V KY V ++    L  F         ++ 
Sbjct: 88  XLRLLASYSVLTSTTRTIEDGGAERVYGLSXVGKYLVPDESRGYLASFTTFLCYPALLQV 147
Query: 137 WLGLKDAVMEGGIP-FNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGF 195
           W   K+AV++  I  F  VHG+  +E+   + + N+ ++++  +      +R LE Y GF
Sbjct: 148 WXNFKEAVVDEDIDLFKNVHGVTKYEFXGKDKKXNQIFNKSXVDVCATEXKRXLEIYTGF 207
Query: 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPE 255
           + +  LVDVGGG G  L +I SKYP IK +NFDLP V+++AP  +G+EHVGG+ F SVP+
Sbjct: 208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDXFASVPQ 267
Query: 256 GDAILMK 262
           GDA ++K
Sbjct: 268 GDAXILK 274

>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone O-Methyltransferase Length = 352

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 113/226 (50%), Gaps = 5/226 (2%)
Query: 39  MATQAAIQLGVFEIIAKAGE-LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS 97
           M+ + A+++ +  II   G+ +S   + + LQ  + K   +  R++R L  +   E  ++
Sbjct: 31  MSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNV-RRLMRYLAHNGFFEI-IT 88
Query: 98  GGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIP-FNRVHG 156
             E  YAL   S+  V   D   L   +   LD     S+  LK  + E  +  F    G
Sbjct: 89  KEEESYALTVASELLVRGSD-LCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLG 147
Query: 157 MHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMIT 216
              +++   NP +N ++++AM + S +    + +    F  +E +VDVGGG G T  +I 
Sbjct: 148 SGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIIC 207
Query: 217 SKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMK 262
             +P++K + FD P VV++      + +VGG+MF S+P  DA+L+K
Sbjct: 208 ETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLK 253

>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase Homolog In Complex With Biochanin A And Sah Length = 357

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 115/230 (50%), Gaps = 8/230 (3%)
Query: 39  MATQAAIQLGVFEIIAKAGE-LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC--- 94
           M+ + +I++ +  II   G+ ++   + + LQ  + K    + R++R L  +   E    
Sbjct: 31  MSLKWSIEMNIPNIIHNHGKPITLSNLVSILQIPSTKVDN-VQRLMRYLAHNGFFEIITN 89
Query: 95  -SVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNR 153
             +   E  YAL   S+  V   +   L   +   LD     S+  LK  V E  +    
Sbjct: 90  QELENEEEAYALTVASELLVKGTE-LCLAPMVECVLDPTLSTSFHNLKKWVYEEDLTLFA 148
Query: 154 VH-GMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTL 212
           V+ G  ++E+ + NP +N  Y++A+ + S +    + +    F+ +E +VDVGGG G T 
Sbjct: 149 VNLGCDLWEFLNKNPEYNTLYNDALASDSKMINLAMKDCNLVFEGLESIVDVGGGNGTTG 208
Query: 213 SMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMK 262
            +I   +P++  V FD P VV++      + +VGG+MF SVP+ DA+L+K
Sbjct: 209 KIICETFPKLTCVVFDRPKVVENLCGSNNLTYVGGDMFISVPKADAVLLK 258

>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Isoflavone O-Methyltransferase Length = 352

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 107/223 (47%), Gaps = 5/223 (2%)
Query: 42  QAAIQLGVFEIIAKAGE-LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE 100
           + A++  +  II   G+ +S   + + LQ  + K   +  R+ R L  +   E  ++  E
Sbjct: 34  KWAVEXNIPNIIQNHGKPISLSNLVSILQVPSSKIGNV-RRLXRYLAHNGFFEI-ITKEE 91
Query: 101 RLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIP-FNRVHGMHI 159
             YAL   S+  V   D   L   +   LD     S+  LK  + E  +  F    G   
Sbjct: 92  ESYALTVASELLVRGSD-LCLAPXVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGF 150
Query: 160 FEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY 219
           +++   NP +N ++++A  + S +    + +    F  +E +VDVGGG G T  +I   +
Sbjct: 151 WDFLDKNPEYNTSFNDAXASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETF 210
Query: 220 PQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMK 262
           P++K + FD P VV++      + +VGG+ F S+P  DA+L+K
Sbjct: 211 PKLKCIVFDRPQVVENLSGSNNLTYVGGDXFTSIPNADAVLLK 253

>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase Complexed With (+)-Pisatin Length = 354

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 116/255 (45%), Gaps = 28/255 (10%)
Query: 27  HAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE-LSAPEIAAQLQAQNVKAPMMLDRMLRL 85
           H  +     V  MA ++A++LG+ + I   G+ ++  E+A+ L+    K  + L R LRL
Sbjct: 9   HLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNI-LHRFLRL 67
Query: 86  LVSHRVLECSVSGGERL-------YALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWL 138
           L  +     ++  G+         Y+L P SK  +S K    L   +   L    ++ W 
Sbjct: 68  LTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGK-PTCLSSIVKGALHPSSLDMWS 126
Query: 139 GLKDAVMEGGIPFNRVHGMHIFEYASGNPRFN------ETYHEAMFNHSTIAMERIL--- 189
             K         FN      +FE A+G   ++      E+   +MF  +  +  R+    
Sbjct: 127 SSKKW-------FNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLV 179
Query: 190 --EHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGG 247
             E+   F+ +E LVDVGGG G    +I   +P +K   FD P VV +      +  VGG
Sbjct: 180 LQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGG 239
Query: 248 NMFESVPEGDAILMK 262
           +MF+S+P  DA+L+K
Sbjct: 240 DMFKSIPSADAVLLK 254

>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone 4'-O-Methyltransferase Complexed With Sah And 2,7,4'-Trihydroxyisoflavanone Length = 358

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 116/255 (45%), Gaps = 28/255 (10%)
Query: 27  HAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE-LSAPEIAAQLQAQNVKAPMMLDRMLRL 85
           H  +     V  MA ++A++LG+ + I   G+ ++  E+A+ L+    K  + L R LRL
Sbjct: 13  HLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNI-LHRFLRL 71
Query: 86  LVSHRVLECSVSGGERL-------YALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWL 138
           L  +     ++  G+         Y+L P SK  +S K    L   +   L    ++ W 
Sbjct: 72  LTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGK-PTCLSSIVKGALHPSSLDMWS 130
Query: 139 GLKDAVMEGGIPFNRVHGMHIFEYASGNPRFN------ETYHEAMFNHSTIAMERIL--- 189
             K         FN      +FE A+G   ++      E+   +MF  +  +  R+    
Sbjct: 131 SSKKW-------FNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLV 183
Query: 190 --EHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGG 247
             E+   F+ +E LVDVGGG G    +I   +P +K   FD P VV +      +  VGG
Sbjct: 184 LQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGG 243
Query: 248 NMFESVPEGDAILMK 262
           +MF+S+P  DA+L+K
Sbjct: 244 DMFKSIPSADAVLLK 258

>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase Complexed With (+)-6a-hydroxymaackiain Length = 357

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 116/255 (45%), Gaps = 28/255 (10%)
Query: 27  HAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE-LSAPEIAAQLQAQNVKAPMMLDRMLRL 85
           H  +     V  MA ++A++LG+ + I   G+ ++  E+A+ L+    K  + L R LRL
Sbjct: 12  HLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNI-LHRFLRL 70
Query: 86  LVSHRVLECSVSGGERL-------YALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWL 138
           L  +     ++  G+         Y+L P SK  +S K    L   +   L    ++ W 
Sbjct: 71  LTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGK-PTCLSSIVKGALHPSSLDMWS 129
Query: 139 GLKDAVMEGGIPFNRVHGMHIFEYASGNPRFN------ETYHEAMFNHSTIAMERIL--- 189
             K         FN      +FE A+G   ++      E+   +MF  +  +  R+    
Sbjct: 130 SSKKW-------FNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLV 182
Query: 190 --EHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGG 247
             E+   F+ +E LVDVGGG G    +I   +P +K   FD P VV +      +  VGG
Sbjct: 183 LQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGG 242
Query: 248 NMFESVPEGDAILMK 262
           +MF+S+P  DA+L+K
Sbjct: 243 DMFKSIPSADAVLLK 257

>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin Methyltransferase (Asmt) In Complex With Sam Length = 353

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 108/249 (43%), Gaps = 28/249 (11%)
Query: 32  AMGVVLPMATQAAIQLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHR 90
           A G ++     AA +LGVF+++A+A G L    +AA ++A      ++LD    + VS +
Sbjct: 16  ANGFMVSQVLFAACELGVFDLLAEAPGPLDVAAVAAGVRASAHGTELLLD----ICVSLK 71
Query: 91  VLECSVSGGERLYALNPVSKYF---VSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEG 147
           +L+    GG+  Y    +S  +   VS     S+  +M     +     W  L DAV EG
Sbjct: 72  LLKVETRGGKAFYRNTELSSDYLTTVSPTSQCSMLKYMG----RTSYRCWGHLADAVREG 127
Query: 148 GIPFNRVHGMHIFE-----YASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLV 202
              +    G+   E     Y S   R    + +A+    ++    +L  ++       + 
Sbjct: 128 RNQYLETFGVPAEELFTAIYRSEGERLQ--FMQALQEVWSVNGRSVLTAFD-LSVFPLMC 184
Query: 203 DVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAP---SYAGVEHVG---GNMFES-VPE 255
           D+GGG G       S YP  K   FD+P VV  A    S+   E +    G+ F+  +PE
Sbjct: 185 DLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPE 244
Query: 256 GDA-ILMKV 263
            D  IL +V
Sbjct: 245 ADLYILARV 253

>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr Length = 369

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 75/175 (42%), Gaps = 14/175 (8%)
Query: 98  GGERLYALNPVSKYFVSNKDG--ASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVH 155
           G + L+A N +S   + +     A+   F A P       +W  L  +V  G   F+  +
Sbjct: 105 GHDDLFAQNALSAVLLPDPASPVATDARFQAAPW---HWRAWEQLTHSVRTGEASFDVAN 161
Query: 156 GMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMI 215
           G   ++    +P+  E ++ A  + S     ++   Y+ F      VD+GGG G   + +
Sbjct: 162 GTSFWQLTHEDPKARELFNRAXGSVSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLXAAV 220
Query: 216 TSKYPQIKAVNFDLPHVVQDAPSYAG-------VEHVGGNMFESVPEG-DAILMK 262
              +P ++    + P V ++A             E + G+ FE++P+G D  L+K
Sbjct: 221 LDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIK 275

>pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll C Biosynthesis Length = 359

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 106/259 (40%), Gaps = 51/259 (19%)
Query: 25  YSHAMQLAM-GVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRML 83
           Y  A +L   G++     +AAI+L +F  +A+      P+  A L A     P  L+ +L
Sbjct: 31  YHRANELVFKGLIEFSCMKAAIELDLFSHMAEG-----PKDLATLAADTGSVPPRLEMLL 85
Query: 84  RLLVSHRVLECSVSGGERLYALNPVSKYFVS------NKDGASLGHFMALPLDKVFMESW 137
             L   RV+  ++  G+  ++L   + Y  S      N     +   MA   D  +M   
Sbjct: 86  ETLRQMRVI--NLEDGK--WSLTEFADYMFSPTPKEPNLHQTPVAKAMAFLADDFYM--- 138
Query: 138 LGLKDAV-----MEGGIPF---NRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERIL 189
            GL  AV      +G +P+    R   ++  E    N +F              A++ +L
Sbjct: 139 -GLSQAVRGQKNFKGQVPYPPVTREDNLYFEEIHRSNAKF--------------AIQLLL 183
Query: 190 EHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNM 249
           E  +    V++++DVGGG G   + +   +P++ +   +LP  +      A  + V   M
Sbjct: 184 EEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRM 242
Query: 250 F--------ESVPEGDAIL 260
                    ES PE DA+L
Sbjct: 243 RGIAVDIYKESYPEADAVL 261

>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm Length = 334

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 106/255 (41%), Gaps = 28/255 (10%)
Query: 29  MQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVS 88
           +Q+  G         A +LG+ ++I ++G  S   +AA + +   +    + R++RLLV+
Sbjct: 13  IQVVTGEWKSRCVYVATRLGLADLI-ESGIDSDETLAAAVGSDAER----IHRLMRLLVA 67
Query: 89  HRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGG 148
             + +     G   YA  P S + + + +G+     M L   + F  +W    +A++ G 
Sbjct: 68  FEIFQGDTRDG---YANTPTS-HLLRDVEGSF--RDMVLFYGEEFHAAWTPACEALLSGT 121
Query: 149 IPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERI--LEHYEGFQNVERLVDVGG 206
             F    G   + Y    P     +  AM   S +A   I  L  + G       VDVGG
Sbjct: 122 PGFELAFGEDFYSYLKRCPDAGRRFLLAM-KASNLAFHEIPRLLDFRG----RSFVDVGG 176
Query: 207 GFGVTLSMITSKYPQIKAVNFDLP---HVVQDAPS--YAG--VEHVGGNMFESVPE-GDA 258
           G G     I    P  + V  D      V +D  S   AG  V  VGG+M + VP  GD 
Sbjct: 177 GSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDI 236
Query: 259 ILMK--VGNFENYQS 271
            L+   +G+ +   S
Sbjct: 237 YLLSRIIGDLDEAAS 251

>pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase (Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah) And 4-Methoxy-E-Rhodomycin T (M-Et) Length = 360

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 101/234 (43%), Gaps = 21/234 (8%)
Query: 38  PMATQAAIQLGVFE-IIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV 96
           PM  + A  L + + I+A A  + A      L A+    P  L R++R LV+  +LE   
Sbjct: 33  PMVVRTAATLRLVDHILAGARTVKA------LAARTDTRPEALLRLIRHLVAIGLLEEDA 86
Query: 97  SGGERLYALNPVSKYFVSNKDGASLG-HFMALPLDKVFMESWLGLKDAVMEGGIPFNRVH 155
            G    +    V +    +   A    H +   + +  + S+  L DA+  G   +  ++
Sbjct: 87  PGE---FVPTEVGELLADDHPAAQRAWHDLTQAVARADI-SFTRLPDAIRTGRPTYESIY 142
Query: 156 GMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMI 215
           G   +E  +G P    ++   +     +A +     Y+ + NV  ++DVGGG G   + I
Sbjct: 143 GKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAI 201
Query: 216 TSKYPQIKAVNFDLPHVVQDAPSYAG-------VEHVGGNMFESVP-EGDAILM 261
             + P + A   ++   V  A SY         V+ V G+ FE +P + DAI++
Sbjct: 202 ARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIIL 255

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	273
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	1e-102
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	5e-98
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	1e-97
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	2e-92
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	1e-90
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	8e-88
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	4e-87
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	1e-86
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	1e-86
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	9e-86
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	1e-81
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	1e-66
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	2e-63
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	2e-60
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	5e-58

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368

 Score =  301 bits (773), Expect = e-102
 Identities = 135/271 (49%), Positives = 184/271 (67%), Gaps = 12/271 (4%)

Query: 1   MGSLSEYQKLAQKKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA---- 56
           MGS    +    +       +EE+   AMQLA   VLPMA +AAI+L V EI+AK+    
Sbjct: 1   MGSTGNAE---IQIIPTHSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPS 57

Query: 57  GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV-----SGGERLYALNPVSKY 111
           G +S  EIAAQL   N +AP+MLDR+LRLL S+ V+  ++        ERLY L PV K+
Sbjct: 58  GYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKF 117

Query: 112 FVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNE 171
              N+DG SL  F+ L  DKV +E W  LKDA++EGGIPFN+ +GM+IF+Y   + R N+
Sbjct: 118 LTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDHRINK 177

Query: 172 TYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPH 231
            +++ M ++STI M++ILE Y GF+ +  +VDVGGG G   SMI +KYP I A+NFDLPH
Sbjct: 178 VFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPH 237

Query: 232 VVQDAPSYAGVEHVGGNMFESVPEGDAILMK 262
           V+QDAP+++GVEH+GG+MF+ VP+GDAI +K
Sbjct: 238 VIQDAPAFSGVEHLGGDMFDGVPKGDAIFIK 268

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364

 Score =  290 bits (744), Expect = 5e-98
 Identities = 123/260 (47%), Positives = 165/260 (63%), Gaps = 8/260 (3%)

Query: 11  AQKKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE--LSAPEIAAQL 68
           +         +E++   A+QLA   VLPM  + AI+LG+ EI+  AG   L+  E+AA+L
Sbjct: 7   STAADMAASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKL 66

Query: 69  QAQ-NVKAPMMLDRMLRLLVSHRVLECSV-----SGGERLYALNPVSKYFVSNKDGASLG 122
            +  N +AP M+DR+LRLL S+ V+ C V         R Y   PV K+   N+DG S+ 
Sbjct: 67  PSAANPEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMA 126

Query: 123 HFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHST 182
               +  DKV MESW  LKDAV++GGIPFN+ +GM  FEY   +PRFN  ++E M NHS 
Sbjct: 127 ALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSI 186

Query: 183 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGV 242
           I  +++LE Y GF+ +  LVDVGGG G T++ I + YP IK VNFDLPHV+ +AP + GV
Sbjct: 187 IITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGV 246

Query: 243 EHVGGNMFESVPEGDAILMK 262
            HVGG+MF+ VP GD ILMK
Sbjct: 247 THVGGDMFKEVPSGDTILMK 266

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372

 Score =  290 bits (743), Expect = 1e-97
 Identities = 109/274 (39%), Positives = 160/274 (58%), Gaps = 12/274 (4%)

Query: 1   MGSLSEYQKLAQKKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE-- 58
           MG+    ++  Q     E+ E+ +   AM L   +V P    AAI L +FEIIAKA    
Sbjct: 1   MGNSYITKEDNQISATSEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPG 60

Query: 59  --LSAPEIAAQLQA--QNVKAPMMLDRMLRLLVSHRVLECSVS-----GGERLYALNPVS 109
             +S  EIA++L A  Q+   P  LDRMLRLL S+ VL  +       G ER+Y L+ V 
Sbjct: 61  AFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVG 120

Query: 110 KYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGI-PFNRVHGMHIFEYASGNPR 168
           KY V ++    L  F         ++ W+  K+AV++  I  F  VHG+  +E+   + +
Sbjct: 121 KYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKK 180

Query: 169 FNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFD 228
            N+ ++++M +     M+R+LE Y GF+ +  LVDVGGG G  L +I SKYP IK +NFD
Sbjct: 181 MNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFD 240

Query: 229 LPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMK 262
           LP V+++AP  +G+EHVGG+MF SVP+GDA+++K
Sbjct: 241 LPQVIENAPPLSGIEHVGGDMFASVPQGDAMILK 274

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352

 Score =  275 bits (706), Expect = 2e-92
 Identities = 65/249 (26%), Positives = 120/249 (48%), Gaps = 5/249 (2%)

Query: 16  EEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE-LSAPEIAAQLQAQNVK 74
            +  E  ++ +   +     +  M+ + A+++ +  II   G+ +S   + + LQ  + K
Sbjct: 8   RKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSK 67

Query: 75  APMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFM 134
               + R++R L  +   E  ++  E  YAL   S+  V   D   L   +   LD    
Sbjct: 68  IGN-VRRLMRYLAHNGFFEI-ITKEEESYALTVASELLVRGSDL-CLAPMVECVLDPTLS 124

Query: 135 ESWLGLKDAVMEGGI-PFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYE 193
            S+  LK  + E  +  F    G   +++   NP +N ++++AM + S +    + +   
Sbjct: 125 GSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDF 184

Query: 194 GFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESV 253
            F  +E +VDVGGG G T  +I   +P++K + FD P VV++      + +VGG+MF S+
Sbjct: 185 VFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSI 244

Query: 254 PEGDAILMK 262
           P  DA+L+K
Sbjct: 245 PNADAVLLK 253

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348

 Score =  271 bits (695), Expect = 1e-90
 Identities = 59/254 (23%), Positives = 95/254 (37%), Gaps = 16/254 (6%)

Query: 14  KHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNV 73
           +   + +  +S     + AMG     A +AA  +GV + +   G  +  E+AA       
Sbjct: 12  RAGGDMDRLQSALALYEEAMGYTYAAALRAAAAVGVADHLV-DGPRTPAELAAATGTD-- 68

Query: 74  KAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVF 133
                L R+LRLL    V+  S    +  +AL        S+         + +  D +F
Sbjct: 69  --ADALRRVLRLLAVRDVVRES----DGRFALTDKGAALRSD-SPVPARAGILMFTDTMF 121

Query: 134 MESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYE 193
                 +  A+      F  + G  +  Y  G+      Y+E M   S      +     
Sbjct: 122 WTMSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEALYYEGMETVSAAEHLILARAG- 180

Query: 194 GFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVV----QDAPSYAG-VEHVGGN 248
            F     + DVGGG G  L  +  ++P ++ V  D   VV     DAP  AG  + V G+
Sbjct: 181 DFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGD 240

Query: 249 MFESVPEGDAILMK 262
               VP  D  ++K
Sbjct: 241 FLREVPHADVHVLK 254

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369

 Score =  264 bits (678), Expect = 8e-88
 Identities = 55/256 (21%), Positives = 104/256 (40%), Gaps = 17/256 (6%)

Query: 15  HEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVK 74
           +        +      +  G     A   A++LGV E++ + G  +A  +A    A    
Sbjct: 29  NPGTAARAAAEETVNDILQGAWKARAIHVAVELGVPELLQE-GPRTATALAEATGAH--- 84

Query: 75  APMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFM 134
               L R+LRLL +  V +    G + L+A N +S   + +   + +             
Sbjct: 85  -EQTLRRLLRLLATVGVFDDL--GHDDLFAQNALSAVLLPD-PASPVATDARFQAAPWHW 140

Query: 135 ESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEG 194
            +W  L  +V  G   F+  +G   ++    +P+  E ++ AM + S     ++   Y  
Sbjct: 141 RAWEQLTHSVRTGEASFDVANGTSFWQLTHEDPKARELFNRAMGSVSLTEAGQVAAAY-D 199

Query: 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYA-------GVEHVGG 247
           F      VD+GGG G  ++ +   +P ++    + P V ++A             E + G
Sbjct: 200 FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPG 259

Query: 248 NMFESVPEG-DAILMK 262
           + FE++P+G D  L+K
Sbjct: 260 DFFETIPDGADVYLIK 275

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358

 Score =  262 bits (672), Expect = 4e-87
 Identities = 70/259 (27%), Positives = 117/259 (45%), Gaps = 14/259 (5%)

Query: 16  EEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE-LSAPEIAAQLQAQNVK 74
            EE E   +  H  +     V  MA ++A++LG+ + I   G+ ++  E+A+ L+    K
Sbjct: 2   SEESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSK 61

Query: 75  APMMLDRMLRLLVSHRVLECSVS-------GGERLYALNPVSKYFVSNKDGASLGHFMAL 127
             + L R LRLL  +     ++          E  Y+L P SK  +S K    L   +  
Sbjct: 62  VNI-LHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPT-CLSSIVKG 119

Query: 128 PLDKVFMESWLGLKDAVMEGG--IPFNRVHGMHIFEYASGNPRFN--ETYHEAMFNHSTI 183
            L    ++ W   K    E      F    G   +++ + +   +    + +AM + S +
Sbjct: 120 ALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRM 179

Query: 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVE 243
               + E+   F+ +E LVDVGGG G    +I   +P +K   FD P VV +      + 
Sbjct: 180 FKLVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLN 239

Query: 244 HVGGNMFESVPEGDAILMK 262
            VGG+MF+S+P  DA+L+K
Sbjct: 240 FVGGDMFKSIPSADAVLLK 258

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360

 Score =  261 bits (670), Expect = 1e-86
 Identities = 54/254 (21%), Positives = 97/254 (38%), Gaps = 17/254 (6%)

Query: 17  EEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAP 76
               ++      +     +  PM  + A  L + + I  AG  +   +AA+   +    P
Sbjct: 12  AARPQQIDALRTLIRLGSLHTPMVVRTAATLRLVDHIL-AGARTVKALAARTDTR----P 66

Query: 77  MMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMES 136
             L R++R LV+  +LE         +    V +    +   A                S
Sbjct: 67  EALLRLIRHLVAIGLLEED---APGEFVPTEVGELLADDHPAAQRAWHDLTQAVARADIS 123

Query: 137 WLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQ 196
           +  L DA+  G   +  ++G   +E  +G P    ++   +     +A +     Y  + 
Sbjct: 124 FTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAY-DWT 182

Query: 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYA-------GVEHVGGNM 249
           NV  ++DVGGG G   + I  + P + A   ++   V  A SY         V+ V G+ 
Sbjct: 183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDF 242

Query: 250 FESVPEG-DAILMK 262
           FE +P   DAI++ 
Sbjct: 243 FEPLPRKADAIILS 256

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374

 Score =  261 bits (670), Expect = 1e-86
 Identities = 51/256 (19%), Positives = 91/256 (35%), Gaps = 15/256 (5%)

Query: 15  HEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVK 74
            E  E  ++     ++    +V PMA + A  L + + +  AG  +   +A +       
Sbjct: 7   GEPLEPTDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLL-AGADTLAGLADRTDT---- 61

Query: 75  APMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFM 134
            P  L R++R L    VLE     G R      +                          
Sbjct: 62  HPQALSRLVRHLTVVGVLEGGEKQG-RPLRPTRLGMLLADGHPAQQRAWLDLNGAVSHAD 120

Query: 135 ESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEG 194
            ++ GL D V  G   +   +G   +E  S +    +++   M     +A E   + Y  
Sbjct: 121 LAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAY-D 179

Query: 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYA-------GVEHVGG 247
           +  V  ++DVGGG G  L+ I  + P ++    +L    + A            V    G
Sbjct: 180 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEG 239

Query: 248 NMFESVPEG-DAILMK 262
           + F+ +P   D +L+ 
Sbjct: 240 DFFKPLPVTADVVLLS 255

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332

 Score =  258 bits (661), Expect = 9e-86
 Identities = 51/249 (20%), Positives = 93/249 (37%), Gaps = 17/249 (6%)

Query: 22  EESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDR 81
           + +    ++    +  PMA + A  L V + IA AG  +A EIA+   A        LDR
Sbjct: 3   KRAAHIGLRALADLATPMAVRVAATLRVADHIA-AGHRTAAEIASAAGAH----ADSLDR 57

Query: 82  MLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLK 141
           +LR LV+  +       G+ +Y L    +    +                     ++ L 
Sbjct: 58  LLRHLVAVGLFTRD---GQGVYGLTEFGEQLRDDHAAGKRKWLDMNSAVGRGDLGFVELA 114

Query: 142 DAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERL 201
            ++  G   +   +G   +E    +P  + ++   M +H  +    I   Y  +  +  +
Sbjct: 115 HSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKY-DWAALGHV 173

Query: 202 VDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFESVP 254
           VDVGGG G  LS + + +  +     DL      A             + V G+ F+ +P
Sbjct: 174 VDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLP 233

Query: 255 EG-DAILMK 262
            G    ++ 
Sbjct: 234 AGAGGYVLS 242

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334

 Score =  248 bits (635), Expect = 1e-81
 Identities = 57/253 (22%), Positives = 90/253 (35%), Gaps = 22/253 (8%)

Query: 18  EEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPM 77
                 +  + +Q+  G         A +LG+ ++I   G  S   +AA + +       
Sbjct: 2   NNSNLAAARNLIQVVTGEWKSRCVYVATRLGLADLIES-GIDSDETLAAAVGSD----AE 56

Query: 78  MLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESW 137
            + R++RLLV+  + +         YA  P S      +   S    M L   + F  +W
Sbjct: 57  RIHRLMRLLVAFEIFQGD---TRDGYANTPTSHLLRDVEG--SFRD-MVLFYGEEFHAAW 110

Query: 138 LGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQN 197
               +A++ G   F    G   + Y    P     +  AM   S +A   I    + F+ 
Sbjct: 111 TPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAM-KASNLAFHEIPRLLD-FRG 168

Query: 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYA-------GVEHVGGNMF 250
               VDVGGG G     I    P  + V  D    +  A            V  VGG+M 
Sbjct: 169 -RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDML 227

Query: 251 ESVPEG-DAILMK 262
           + VP   D  L+ 
Sbjct: 228 QEVPSNGDIYLLS 240

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359

 Score =  210 bits (537), Expect = 1e-66
 Identities = 52/257 (20%), Positives = 102/257 (39%), Gaps = 27/257 (10%)

Query: 17  EEEEEEESYSHAMQLAM-GVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKA 75
              +    Y  A +L   G++     +AAI+L +F  +A+ G      +AA   +     
Sbjct: 23  SNNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE-GPKDLATLAADTGS----V 77

Query: 76  PMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHF--MALPLDKVF 133
           P  L+ +L  L   RV+       +  ++L   + Y  S        H   +A  +  + 
Sbjct: 78  PPRLEMLLETLRQMRVINLE----DGKWSLTEFADYMFSPTPKEPNLHQTPVAKAMAFLA 133

Query: 134 MESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYE 193
            + ++GL  AV          +      Y       N  + E   +++  A++ +LE   
Sbjct: 134 DDFYMGLSQAVRGQK------NFKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEA- 186

Query: 194 GFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAG-------VEHVG 246
               V++++DVGGG G   + +   +P++ +   +LP  +      A        +  + 
Sbjct: 187 KLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIA 246

Query: 247 GNMF-ESVPEGDAILMK 262
            +++ ES PE DA+L  
Sbjct: 247 VDIYKESYPEADAVLFC 263

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335

 Score =  201 bits (512), Expect = 2e-63
 Identities = 40/243 (16%), Positives = 82/243 (33%), Gaps = 23/243 (9%)

Query: 29  MQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVS 88
                      A +AA++L VF  I++ G  S+  +A + Q         +  +   LV 
Sbjct: 11  FNTVNAYQRSAAIKAAVELNVFTAISQ-GIESSQSLAQKCQTS----ERGMRMLCDYLVI 65

Query: 89  HRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGG 148
              +          Y L   S  F+  +    +G  +   L  +    +  L  AV++GG
Sbjct: 66  IGFMTKQ----AEGYRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVLKGG 121

Query: 149 IPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGF 208
              +    +          +F +     M N + +  + + E+        +++D+    
Sbjct: 122 TAISSEGTL--SPEHPVWVQFAKAMSPMMANPAQLIAQLVNENKIE---PLKVLDISASH 176

Query: 209 GVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAG-------VEHVGGNMFESV--PEGDAI 259
           G+    +    P  +    D   V++ A   A           + G+ FE     + D +
Sbjct: 177 GLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLV 236

Query: 260 LMK 262
           L+ 
Sbjct: 237 LLP 239

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363

 Score =  194 bits (496), Expect = 2e-60
 Identities = 46/268 (17%), Positives = 103/268 (38%), Gaps = 28/268 (10%)

Query: 10  LAQKKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE-LSAPEIAAQL 68
           ++ +  +E+    E+   A ++A G V+   ++  ++ G+F++++   E  +  EI+ + 
Sbjct: 1   MSLRYTKEQCTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRT 60

Query: 69  QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALP 128
                        +L   ++   +       E  Y L     + +++K       F    
Sbjct: 61  GLT----RYAAQVLLEASLTIGTILLE----EDRYVLAKAGWFLLNDKMARVNMEF---- 108

Query: 129 LDKVFMESWLGLKDAVMEGGIPFNRVHGMH--IFEYASGNP-RFNETYHEAMFNHSTIAM 185
              V  +    L++A++ G     +V G    I+E  S  P +  +++      +S  + 
Sbjct: 109 NHDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYSDQSF 168

Query: 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAG---- 241
            + LE      + +RL+D+GG  G   +       +++    DLP  ++           
Sbjct: 169 GKALEIV-FSHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSG 227

Query: 242 ---VEHVGGNMFE---SVPEG-DAILMK 262
              +   G N+ +     P G DA+ M 
Sbjct: 228 SERIHGHGANLLDRDVPFPTGFDAVWMS 255

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352

 Score =  187 bits (478), Expect = 5e-58
 Identities = 35/257 (13%), Positives = 88/257 (34%), Gaps = 29/257 (11%)

Query: 17  EEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAP 76
           E++    S    ++L+           A+   +F++       +  E+AA          
Sbjct: 17  EDKAALTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQTG--RTPAEVAASFGMV----E 70

Query: 77  MMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMES 136
                +L  L +  +L          +    +++ +++      +G    +    +  ++
Sbjct: 71  GKAAILLHALAALGLLTKE----GDAFRNTALTERYLTTTSADYIGPI--VEHQYLQWDN 124

Query: 137 WLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQ 196
           W  L + +        +          + + R  + +++AM   S   ++ + E    F 
Sbjct: 125 WPRLGEILRSE-----KPLAFQQESRFAHDTRARDAFNDAMVRLSQPMVDVVSELG-VFA 178

Query: 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAG-------VEHVGGNM 249
               ++D+ GG G  L+ +  ++PQ+    +DLP     A            VE    N+
Sbjct: 179 RARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNL 238

Query: 250 FESVPEG----DAILMK 262
            ++        D +++ 
Sbjct: 239 LDARNFEGGAADVVMLN 255

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	273
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	100.0
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	100.0
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	100.0
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	100.0
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	100.0
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	100.0
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	100.0
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	100.0
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	100.0
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	100.0
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	100.0
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	100.0
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	100.0
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	100.0
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	100.0
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	100.0
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.39
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.04
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.02
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.98
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.97
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.96
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	98.93
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	98.93
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	98.89
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.88
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	98.86
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.86
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	98.86
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	98.85
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	98.85
1xxl_A	239	YCGJ protein; structural genomics, protein structu	98.83
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	98.83
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	98.83
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.83
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	98.82
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	98.82
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	98.81
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	98.8
3f4k_A	257	Putative methyltransferase; structural genomics, P	98.8
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.79
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.79
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	98.77
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.77
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	98.76
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.74
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.72
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.72
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	98.72
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	98.71
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.71
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	98.7
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.7
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.7
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.7
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	98.7
3ocj_A	305	Putative exported protein; structural genomics, PS	98.68
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	98.67
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.66
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	98.66
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.66
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.66
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	98.65
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	98.64
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	98.63
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.62
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	98.62
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	98.6
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.59
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.59
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.57
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	98.57
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.57
2b3t_A	276	Protein methyltransferase HEMK; translation termin	98.56
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	98.56
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	98.55
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	98.54
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.53
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.53
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	98.53
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	98.52
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	98.52
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	98.52
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.51
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.51
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	98.5
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	98.49
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.49
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.49
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	98.49
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.47
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.47
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.47
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.47
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	98.47
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.46
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.46
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	98.45
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.45
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.45
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	98.44
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	98.44
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.43
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	98.42
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.42
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	98.42
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	98.41
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.41
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	98.41
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.41
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.4
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.4
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	98.4
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.39
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.39
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	98.38
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	98.37
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	98.37
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	98.37
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	98.36
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	98.34
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.34
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	98.33
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	98.33
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	98.32
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.31
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.31
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	98.3
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	98.3
2h00_A	254	Methyltransferase 10 domain containing protein; st	98.29
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	98.29
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.29
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	98.29
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	98.28
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	98.28
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	98.28
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	98.27
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	98.27
2esr_A	177	Methyltransferase; structural genomics, hypothetic	98.26
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	98.26
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	98.26
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	98.26
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.26
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.25
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	98.25
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	98.25
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	98.25
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.25
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	98.25
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.24
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	98.23
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	98.23
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.23
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.22
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.21
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	98.2
3lpm_A	259	Putative methyltransferase; structural genomics, p	98.2
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	98.19
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.18
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	98.18
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	98.18
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	98.17
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	98.17
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	98.17
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	98.16
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.16
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	98.16
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	98.15
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.15
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	98.14
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.13
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	98.13
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	98.13
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.13
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	98.13
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.11
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	98.11
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.1
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.09
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	98.09
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.09
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.09
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	98.08
2b25_A	336	Hypothetical protein; structural genomics, methyl	98.07
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.06
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	98.06
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	98.05
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	98.05
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	98.05
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.04
2frn_A	278	Hypothetical protein PH0793; structural genomics,	98.04
1ws6_A	171	Methyltransferase; structural genomics, riken stru	98.04
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	98.03
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.03
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	98.02
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.02
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	98.02
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	98.02
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.02
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.0
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.0
2o07_A	304	Spermidine synthase; structural genomics, structur	98.0
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	97.99
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	97.99
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	97.98
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	97.98
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	97.97
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	97.97
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	97.97
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	97.96
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	97.96
2pt6_A	321	Spermidine synthase; transferase, structural genom	97.96
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	97.95
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	97.95
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	97.93
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	97.92
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	97.92
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	97.91
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	97.9
2i7c_A	283	Spermidine synthase; transferase, structural genom	97.9
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	97.9
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	97.89
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	97.87
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	97.87
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	97.86
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	97.82
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	97.82
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	97.82
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	97.8
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	97.79
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	97.79
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	97.77
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	97.72
3sso_A	419	Methyltransferase; macrolide, natural product, ros	97.72
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	97.71
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	97.68
3b73_A	111	PHIH1 repressor-like protein; winged-helix-turn-he	97.67
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	97.66
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	97.66
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	97.66
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	97.65
1xmk_A	79	Double-stranded RNA-specific adenosine deaminase;	97.65
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	97.59
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	97.57
3k6r_A	278	Putative transferase PH0793; structural genomics,	97.54
1y0u_A	96	Arsenical resistance operon repressor, putative; s	97.51
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	97.49
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	97.49
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	97.48
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	97.37
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	97.36
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	97.36
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	97.33
3pqk_A	102	Biofilm growth-associated repressor; helix-turn-he	97.29
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	97.28
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	97.27
2heo_A	67	Z-DNA binding protein 1; protein DLM1-Z-DNA comple	97.18
3jth_A	98	Transcription activator HLYU; transcription factor	97.18
1qbj_A	81	Protein (double-stranded RNA specific adenosine D	97.17
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	97.17
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	97.15
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	97.15
1u2w_A	122	CADC repressor, cadmium efflux system accessory pr	97.15
1ub9_A	100	Hypothetical protein PH1061; helix-turn-helix moti	97.09
3cuo_A	99	Uncharacterized HTH-type transcriptional regulato;	97.07
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	97.07
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	97.07
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	97.06
3f6o_A	118	Probable transcriptional regulator, ARSR family pr	97.06
3ll7_A	410	Putative methyltransferase; methytransferase, stru	97.06
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	97.05
1qgp_A	77	Protein (double stranded RNA adenosine deaminase);	97.02
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	97.02
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	97.01
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	97.01
3ech_A	142	MEXR, multidrug resistance operon repressor; winge	96.95
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	96.94
2htj_A	81	P fimbrial regulatory protein KS71A; winged helix-	96.9
3df8_A	111	Possible HXLR family transcriptional factor; APC89	96.88
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	96.87
3f6v_A	151	Possible transcriptional regulator, ARSR family pr	96.85
2oqg_A	114	Possible transcriptional regulator, ARSR family P;	96.84
2jsc_A	118	Transcriptional regulator RV1994C/MT2050; cadmium,	96.84
1r1u_A	106	CZRA, repressor protein; zinc, DNA binding, transc	96.83
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	96.8
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	96.77
2kko_A	108	Possible transcriptional regulatory protein (possi	96.75
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	96.74
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	96.65
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	96.65
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	96.64
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	96.64
1tbx_A	99	ORF F-93, hypothetical 11.0 kDa protein; sulfolobu	96.62
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	96.59
1on2_A	142	Transcriptional regulator MNTR; helix-turn-helix,	96.59
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	96.58
2hzt_A	107	Putative HTH-type transcriptional regulator YTCD;	96.57
1r1t_A	122	Transcriptional repressor SMTB; zinc, transcriptio	96.57
1r7j_A	95	Conserved hypothetical protein SSO10A; winged heli	96.56
1oyi_A	82	Double-stranded RNA-binding protein; (alpha+beta)	96.56
3bdd_A	142	Regulatory protein MARR; putative multiple antibio	96.55
3mq0_A	275	Transcriptional repressor of the blcabc operon; he	96.54
2wte_A	244	CSA3; antiviral protein, viral resistance, winged	96.53
1xn7_A	78	Hypothetical protein YHGG; alpha+beta, GFT structu	96.47
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	96.47
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	96.45
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	96.44
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	96.43
2k02_A	87	Ferrous iron transport protein C; FEOC, iron-sulfu	96.42
2nyx_A	168	Probable transcriptional regulatory protein, RV14;	96.33
2zkz_A	99	Transcriptional repressor PAGR; protein-DNA, HTH m	96.33
3g3z_A	145	NMB1585, transcriptional regulator, MARR family; t	96.28
4a5n_A	131	Uncharacterized HTH-type transcriptional regulato;	96.28
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	96.25
2xrn_A	241	HTH-type transcriptional regulator TTGV; DNA-bindi	96.21
1z7u_A	112	Hypothetical protein EF0647; winged-helix-turn-hel	96.19
1mkm_A	249	ICLR transcriptional regulator; structural genomic	96.18
3kp7_A	151	Transcriptional regulator TCAR; multiple drug resi	96.1
2gxg_A	146	146AA long hypothetical transcriptional regulator;	96.1
3bja_A	139	Transcriptional regulator, MARR family, putative;	96.07
3k0l_A	162	Repressor protein; helix-turn-helix, structural ge	96.07
1yyv_A	131	Putative transcriptional regulator; reductive meth	96.06
1jgs_A	138	Multiple antibiotic resistance protein MARR; trans	96.05
2jt1_A	77	PEFI protein; solution structure, winged helix-tur	96.04
3bpv_A	138	Transcriptional regulator; MARR, DNA binding, tran	96.03
2qww_A	154	Transcriptional regulator, MARR family; YP_013417.	96.02
2fu4_A	83	Ferric uptake regulation protein; DNA binding doma	96.01
3nrv_A	148	Putative transcriptional regulator (MARR/EMRR FAM;	95.99
2fsw_A	107	PG_0823 protein; alpha-beta structure, helix-turn-	95.99
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	95.98
2f2e_A	146	PA1607; transcription factor, helix-TRUN-helix, AP	95.98
3r4k_A	260	Transcriptional regulator, ICLR family; DNA/RNA-bi	95.97
2nnn_A	140	Probable transcriptional regulator; structural gen	95.96
3oop_A	143	LIN2960 protein; protein structure initiative, PSI	95.96
2fa5_A	162	Transcriptional regulator MARR/EMRR family; multip	95.94
3f3x_A	144	Transcriptional regulator, MARR family, putative;	95.93
2hr3_A	147	Probable transcriptional regulator; MCSG, structur	95.91
2rdp_A	150	Putative transcriptional regulator MARR; PFAM PF01	95.9
4hbl_A	149	Transcriptional regulator, MARR family; HTH, trans	95.84
1s3j_A	155	YUSO protein; structural genomics, MARR transcript	95.83
1lj9_A	144	Transcriptional regulator SLYA; HTH DNA binding pr	95.8
3e6m_A	161	MARR family transcriptional regulator; APC88769, s	95.79
3cdh_A	155	Transcriptional regulator, MARR family; helix-turn	95.76
2h09_A	155	Transcriptional regulator MNTR; transcription regu	95.72
2y75_A	129	HTH-type transcriptional regulator CYMR; DNA bindi	95.71
2fbh_A	146	Transcriptional regulator PA3341; MARR, transcript	95.7
2a61_A	145	Transcriptional regulator TM0710; APC4350, MCSG, m	95.66
2pg4_A	95	Uncharacterized protein; structural genomics, join	95.65
2lkp_A	119	Transcriptional regulator, ARSR family; symmetric	95.64
3bj6_A	152	Transcriptional regulator, MARR family; helix-turn	95.61
2g7u_A	257	Transcriptional regulator; ICLR family, structural	95.6
3hsr_A	140	HTH-type transcriptional regulator SARZ; helix-tur	95.59
1bja_A	95	Transcription regulatory protein MOTA; activation	95.59
2eth_A	154	Transcriptional regulator, putative, MAR family; M	95.58
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	95.57
2fbi_A	142	Probable transcriptional regulator; MARR, APC5816,	95.57
3eco_A	139	MEPR; mutlidrug efflux pump regulator winged helix	95.52
3cjn_A	162	Transcriptional regulator, MARR family; silicibact	95.5
2x4h_A	139	Hypothetical protein SSO2273; transcription; 2.30A	95.49
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	95.48
3s2w_A	159	Transcriptional regulator, MARR family; structural	95.48
2bv6_A	142	MGRA, HTH-type transcriptional regulator MGRA; mul	95.45
2o0y_A	260	Transcriptional regulator; ICLR-family, structural	95.44
3tgn_A	146	ADC operon repressor ADCR; helix-turn-helix, trans	95.43
2pex_A	153	Transcriptional regulator OHRR; transcription regu	95.42
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	95.39
1sfx_A	109	Conserved hypothetical protein AF2008; structural	95.29
2ia2_A	265	Putative transcriptional regulator; SAD, PSI-2, st	95.27
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	95.22
3bro_A	141	Transcriptional regulator; helix_TURN_helix, multi	95.22
1z91_A	147	Organic hydroperoxide resistance transcriptional;	95.17
3lwf_A	159	LIN1550 protein, putative transcriptional regulato	95.15
3deu_A	166	Transcriptional regulator SLYA; MARR, WING-helix,	95.13
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	95.11
3khk_A	544	Type I restriction-modification system methylation	95.08
2p4w_A	202	Transcriptional regulatory protein ARSR family; ar	95.07
3jw4_A	148	Transcriptional regulator, MARR/EMRR family; DNA-b	95.04
2obp_A	96	Putative DNA-binding protein; structural genomics,	94.99
2frh_A	127	SARA, staphylococcal accessory regulator A; winged	94.98
3boq_A	160	Transcriptional regulator, MARR family; MARR famil	94.94
3lkd_A	542	Type I restriction-modification system methyltrans	94.91
3fm5_A	150	Transcriptional regulator; MCSG, PF04017, PSI, MAR	94.9
3u2r_A	168	Regulatory protein MARR; structural genomics, PSI-	94.87
1p6r_A	82	Penicillinase repressor; transcription regulation,	94.83
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	94.8
2qvo_A	95	Uncharacterized protein AF_1382; PSI, structural g	94.78
3hrs_A	214	Metalloregulator SCAR; DTXR/MNTR family member, tr	94.73
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	94.72
3nqo_A	189	MARR-family transcriptional regulator; structural	94.64
2w25_A	150	Probable transcriptional regulatory protein; trans	94.62
2cfx_A	144	HTH-type transcriptional regulator LRPC; transcrip	94.58
2pn6_A	150	ST1022, 150AA long hypothetical transcriptional re	94.54
3t8r_A	143	Staphylococcus aureus CYMR; transcriptional regula	94.52
2lnb_A	80	Z-DNA-binding protein 1; structural genomics, nort	94.51
1ylf_A	149	RRF2 family protein; structural genomics, transcri	94.49
3r0a_A	123	Putative transcriptional regulator; structural gen	94.43
3u1d_A	151	Uncharacterized protein; GNTR-superfamily, structu	94.34
2p5v_A	162	Transcriptional regulator, LRP/ASNC family; NMB057	94.3
4g6q_A	182	Putative uncharacterized protein; structural genom	94.22
1q1h_A	110	TFE, transcription factor E, TFE; TFIIE, transcrip	94.21
4aik_A	151	Transcriptional regulator SLYA; transcription, tra	94.13
2fxa_A	207	Protease production regulatory protein HPR; protea	94.08
2qlz_A	232	Transcription factor PF0095; 2.50A {Pyrococcus fur	94.04
2cyy_A	151	Putative HTH-type transcriptional regulator PH151;	93.98
2cg4_A	152	Regulatory protein ASNC; DNA binding, FFRP, LRP fa	93.86
1okr_A	123	MECI, methicillin resistance regulatory protein ME	93.82
2e1c_A	171	Putative HTH-type transcriptional regulator PH151;	93.81
1uly_A	192	Hypothetical protein PH1932; helix-turn-helix, str	93.79
2ia0_A	171	Putative HTH-type transcriptional regulator PF086;	93.75
3i4p_A	162	Transcriptional regulator, ASNC family; PSI, struc	93.73
2dbb_A	151	Putative HTH-type transcriptional regulator PH006;	93.7
3k69_A	162	Putative transcription regulator; putative transcr	93.63
4b8x_A	147	SCO5413, possible MARR-transcriptional regulator;	93.63
2zig_A	297	TTHA0409, putative modification methylase; methylt	93.63
2k4b_A	99	Transcriptional regulator; DNA binding protein, wi	93.63
1i1g_A	141	Transcriptional regulator LRPA; helix-turn-helix,	93.63
2d1h_A	109	ST1889, 109AA long hypothetical transcriptional re	93.62
3cta_A	230	Riboflavin kinase; structural genomics, transferas	93.45
2fbk_A	181	Transcriptional regulator, MARR family; winged-hel	93.21
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	93.21
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	93.19
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	93.1
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	92.83
1hsj_A	487	Fusion protein consisting of staphylococcus access	92.79
4esf_A	117	PADR-like transcriptional regulator; PADR family,	92.73
1xd7_A	145	YWNA; structural genomics, protein structure initi	92.66
2esh_A	118	Conserved hypothetical protein TM0937; APC5794, st	92.58
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	92.36
1ku9_A	152	Hypothetical protein MJ223; putative transcription	92.27
4fx0_A	148	Probable transcriptional repressor protein; helix-	92.26
2o03_A	131	Probable zinc uptake regulation protein FURB; DNA-	91.9
2fe3_A	145	Peroxide operon regulator; oxidative stress regula	91.82
3k2z_A	196	LEXA repressor; winged helix-turn-helix, SOS syste	91.76
1sfu_A	75	34L protein; protein/Z-DNA complex, DNA binding pr	91.6
2qlz_A	232	Transcription factor PF0095; 2.50A {Pyrococcus fur	91.12
2dk5_A	91	DNA-directed RNA polymerase III 39 kDa polypeptide	91.0
3f8b_A	116	Transcriptional regulator, PADR-like family; winge	90.95
3l7w_A	108	Putative uncharacterized protein SMU.1704; PADR, t	90.73
3hhh_A	116	Transcriptional regulator, PADR family; PF03551, s	90.59
1j5y_A	187	Transcriptional regulator, biotin repressor famil;	90.41
2g9w_A	138	Conserved hypothetical protein; DNA-binding domain	90.4
3eyi_A	72	Z-DNA-binding protein 1; alternative splicing, DNA	90.39
2vn2_A	128	DNAD, chromosome replication initiation protein; D	90.27
1sd4_A	126	Penicillinase repressor; BLAI, MECI, methicillin,	90.21
1xma_A	145	Predicted transcriptional regulator; southea colla	89.91
1fx7_A	230	Iron-dependent repressor IDER; DTXR, iron-dependen	89.8
1p4x_A	250	Staphylococcal accessory regulator A homologue; wi	89.67
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	89.67
1v4r_A	102	Transcriptional repressor; helix-turn-helix, winge	89.52
2vxz_A	165	Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Py	89.36
3elk_A	117	Putative transcriptional regulator TA0346; structu	89.36
2qq9_A	226	Diphtheria toxin repressor; regulator, DTXR, helix	89.31
1yg2_A	179	Gene activator APHA; virulence factor, winged heli	89.25
3mwm_A	139	ZUR, putative metal uptake regulation protein; FUR	89.09
2xvc_A	59	ESCRT-III, SSO0910; cell cycle, cell division, cyt	89.02
2xig_A	150	Ferric uptake regulation protein; hpfur, transcrip	88.9
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	88.36
1mzb_A	136	Ferric uptake regulation protein; ferric uptake re	88.35
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	88.33
1bia_A	321	BIRA bifunctional protein; transcription regulatio	88.26
3i71_A	68	Ethanolamine utilization protein EUTK; helix-turn-	88.04
2hoe_A	380	N-acetylglucosamine kinase; TM1224, structural gen	87.95
2o0m_A	345	Transcriptional regulator, SORC family; structural	87.8
1jhg_A	101	Trp operon repressor; complex (regulatory protein-	87.38
1z6r_A	406	MLC protein; transcriptional repressor, ROK family	87.19
2p8t_A	200	Hypothetical protein PH0730; pyrococcus horikoshii	87.14
1z05_A	429	Transcriptional regulator, ROK family; structural	86.37
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	85.71
3cvo_A	202	Methyltransferase-like protein of unknown functio;	85.56
2p5k_A	64	Arginine repressor; DNA-binding domain, winged hel	85.19
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	84.79
4esb_A	115	Transcriptional regulator, PADR family; DNA bindin	84.74
3lmm_A	583	Uncharacterized protein; multi-domained alpha-beta	84.73
2v79_A	135	DNA replication protein DNAD; primosome, DNA-bindi	84.15
3eyy_A	145	Putative iron uptake regulatory protein; NUR, nick	83.55
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	83.21
3maj_A	382	DNA processing chain A; MCSG, PSI-2, structural ge	83.16
3cuq_B	218	Vacuolar protein-sorting-associated protein 36; ES	82.93
1p4x_A	250	Staphylococcal accessory regulator A homologue; wi	82.83
2w57_A	150	Ferric uptake regulation protein; gene regulation,	82.74
2b0l_A	102	GTP-sensing transcriptional pleiotropic repressor;	82.52
3ri2_A	123	Transcriptional regulator, PADR-like family; PSI-b	82.24
2w48_A	315	Sorbitol operon regulator; SORC, activator, repres	81.7
3eqx_A	373	FIC domain containing transcriptional regulator; F	81.46
3ufb_A	530	Type I restriction-modification system methyltran	81.01
2pjp_A	121	Selenocysteine-specific elongation factor; SELB, p	80.99
2yu3_A	95	DNA-directed RNA polymerase III 39 kDa polypeptide	80.18
3qph_A	342	TRMB, A global transcription regulator; transcript	80.12

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=100.00  E-value=1.3e-45  Score=334.64  Aligned_cols=246  Identities=23%  Similarity=0.374  Sum_probs=218.3

Q ss_pred             hhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCC
Q 024046           21 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGG   99 (273)
Q Consensus        21 ~~~~~~~l~~~~~g~~~~~aL~~a~elglfd~L~~~-g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~   99 (273)
                      ..++++.|+++++||+.+++|++|+||||||.|.+. ||+|++|||+.+|+    +++.++|+||+|++.|++++....+
T Consensus         5 e~~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~~~~~~~   80 (353)
T 4a6d_A            5 EDQAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAPGPLDVAAVAAGVRA----SAHGTELLLDICVSLKLLKVETRGG   80 (353)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSSSCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCCCCCCHHHHHHhhCc----CHHHHHHHHHHHHHCCCEEEeccCc
Confidence            347889999999999999999999999999999874 49999999999999    9999999999999999998642234


Q ss_pred             CcceecChhchHhhcCCCCCccchhhcccCChhHHHHhhhHHHHHhcCCCcchhccC---CchhhhhhcCcchHHHHHHH
Q 024046          100 ERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHG---MHIFEYASGNPRFNETYHEA  176 (273)
Q Consensus       100 ~~~y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~~~~~~g---~~~~~~~~~~~~~~~~f~~a  176 (273)
                      .+.|++|+.++.++....+.+++.++.+. .+..+..|..|+++++++++++...+|   .++|+++..+++....|+.+
T Consensus        81 ~~~y~~t~~s~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~vr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~a  159 (353)
T 4a6d_A           81 KAFYRNTELSSDYLTTVSPTSQCSMLKYM-GRTSYRCWGHLADAVREGRNQYLETFGVPAEELFTAIYRSEGERLQFMQA  159 (353)
T ss_dssp             EEEEEECHHHHHHHSTTSTTCCHHHHHHH-HHTHHHHHTTHHHHHHHTSCCHHHHHSCCCSSHHHHHTSSHHHHHHHHHH
T ss_pred             cceeeCCHHHHHHhhcCCchHHHHHHHHh-CHHHHHHHHHHHHHHhcCCChhHHhcCCChHHHHHHHhhCHHHHHHHHHH
Confidence            56899999998776666556788887764 355778999999999999999988887   46899999999999999999


Q ss_pred             HHhcchhhHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCC------CCCceEEEcccC
Q 024046          177 MFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS------YAGVEHVGGNMF  250 (273)
Q Consensus       177 m~~~~~~~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~------~~ri~~~~gD~f  250 (273)
                      |...+...++.+++.++ |++..+|||||||+|.++..++++||+++++++|+|+|++.|++      .+||++++||||
T Consensus       160 M~~~~~~~~~~~~~~~~-~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~  238 (353)
T 4a6d_A          160 LQEVWSVNGRSVLTAFD-LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFF  238 (353)
T ss_dssp             HHTTHHHHHHHHHHSSC-GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEESCTT
T ss_pred             HHHHHHHHHHHHHHhcC-cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeecCccc
Confidence            99998888889999998 99999999999999999999999999999999999999998764      289999999999


Q ss_pred             CC-CCCCCEEEecccccccCCCC
Q 024046          251 ES-VPEGDAILMKVGNFENYQSH  272 (273)
Q Consensus       251 ~~-~p~~D~~~l~~vLHd~~~~~  272 (273)
                      ++ .|.+|+|++++|||||+|++
T Consensus       239 ~~~~~~~D~~~~~~vlh~~~d~~  261 (353)
T 4a6d_A          239 KDPLPEADLYILARVLHDWADGK  261 (353)
T ss_dssp             TSCCCCCSEEEEESSGGGSCHHH
T ss_pred             cCCCCCceEEEeeeecccCCHHH
Confidence            85 55679999999999999874

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=100.00  E-value=3.4e-44  Score=326.67  Aligned_cols=256  Identities=48%  Similarity=0.842  Sum_probs=227.1

Q ss_pred             chhhhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhC--CCCCHHHHHHHhCc-CCCCCcchHHHHHHHHhcCCcee
Q 024046           17 EEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA--GELSAPEIAAQLQA-QNVKAPMMLDRMLRLLVSHRVLE   93 (273)
Q Consensus        17 ~~~~~~~~~~~l~~~~~g~~~~~aL~~a~elglfd~L~~~--g~~t~~eLA~~~g~-~~~~~~~~l~rlL~~L~~~gll~   93 (273)
                      .+.|+.+++..++++++|++.+++|++|++||||++|.+.  +|+|++|||+++|+ +++.++..++|+||+|++.|+|+
T Consensus        13 ~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~   92 (364)
T 3p9c_A           13 AASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVT   92 (364)
T ss_dssp             CHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEE
T ss_pred             cchHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEE
Confidence            5667889999999999999999999999999999999985  49999999999994 21112338999999999999999


Q ss_pred             cccc---CC--CcceecChhchHhhcCCCCCccchhhcccCChhHHHHhhhHHHHHhcCCCcchhccCCchhhhhhcCcc
Q 024046           94 CSVS---GG--ERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPR  168 (273)
Q Consensus        94 ~~~~---~~--~~~y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~~~~~~g~~~~~~~~~~~~  168 (273)
                      +...   .+  ++.|++|+.++.|+.+.++.++++++.+.+++.++..|.+|++++++|+++|+..+|.++|+|+..+|+
T Consensus        93 ~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~~~~~~~~g~~~~~~~~~~~~  172 (364)
T 3p9c_A           93 CLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPR  172 (364)
T ss_dssp             EEEEECSSSCEEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHHTTCHH
T ss_pred             EeccccCCCCcCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCCChHHHhcCCCHHHHHHhCHH
Confidence            8410   01  468999999998887765568888887666777889999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhcchhhHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCCCCceEEEcc
Q 024046          169 FNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGN  248 (273)
Q Consensus       169 ~~~~f~~am~~~~~~~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~~ri~~~~gD  248 (273)
                      ..+.|+.+|...+....+.+++.++.+++..+|||||||+|.++..+++++|+++++++|+|.+++.|+..+||+++.+|
T Consensus       173 ~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D  252 (364)
T 3p9c_A          173 FNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGD  252 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECC
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEEEeCC
Confidence            99999999999888777888888876788899999999999999999999999999999999999999988999999999


Q ss_pred             cCCCCCCCCEEEecccccccCCCC
Q 024046          249 MFESVPEGDAILMKVGNFENYQSH  272 (273)
Q Consensus       249 ~f~~~p~~D~~~l~~vLHd~~~~~  272 (273)
                      +|+++|.+|+|+++++||+|+|++
T Consensus       253 ~~~~~p~~D~v~~~~vlh~~~d~~  276 (364)
T 3p9c_A          253 MFKEVPSGDTILMKWILHDWSDQH  276 (364)
T ss_dssp             TTTCCCCCSEEEEESCGGGSCHHH
T ss_pred             cCCCCCCCCEEEehHHhccCCHHH
Confidence            999999889999999999998763

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=100.00  E-value=7e-44  Score=325.03  Aligned_cols=269  Identities=51%  Similarity=0.841  Sum_probs=224.3

Q ss_pred             CCchhHHHHhhccCCCchhhhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhC-C---CCCHHHHHHHhCcCCCCCc
Q 024046            1 MGSLSEYQKLAQKKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA-G---ELSAPEIAAQLQAQNVKAP   76 (273)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~aL~~a~elglfd~L~~~-g---~~t~~eLA~~~g~~~~~~~   76 (273)
                      |||.++-+-.  ... .+.+..+++..+++++.|++.+++|++|++|||||.|.+. |   |+|++|||+++|..++.++
T Consensus         1 ~~~~~~~~~~--~~~-~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~   77 (368)
T 3reo_A            1 MGSTGNAEIQ--IIP-THSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAP   77 (368)
T ss_dssp             -------------------CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHH
T ss_pred             CCCccccccc--ccC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcch
Confidence            7887766432  122 4446788899999999999999999999999999999984 4   6999999999983122223


Q ss_pred             chHHHHHHHHhcCCceecccc---CC--CcceecChhchHhhcCCCCCccchhhcccCChhHHHHhhhHHHHHhcCCCcc
Q 024046           77 MMLDRMLRLLVSHRVLECSVS---GG--ERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPF  151 (273)
Q Consensus        77 ~~l~rlL~~L~~~gll~~~~~---~~--~~~y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~~  151 (273)
                      +.++|+||+|++.|+|++...   .+  ++.|++|+.++.|+.+.++.+++.++.+.+++.++..|.+|++++++|+++|
T Consensus        78 ~~l~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~~~~  157 (368)
T 3reo_A           78 VMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPF  157 (368)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCSCHH
T ss_pred             hhHHHHHHHHHhCCCeEEecccCCCCcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCCCHH
Confidence            499999999999999997410   01  3689999999998877666788888877667778889999999999999999


Q ss_pred             hhccCCchhhhhhcCcchHHHHHHHHHhcchhhHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechH
Q 024046          152 NRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPH  231 (273)
Q Consensus       152 ~~~~g~~~~~~~~~~~~~~~~f~~am~~~~~~~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~  231 (273)
                      +..+|.++|+|+..+|+..+.|+.+|...+....+.+++.++.+++..+|||||||+|.++..+++++|+++++++|+|.
T Consensus       158 ~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~  237 (368)
T 3reo_A          158 NKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPH  237 (368)
T ss_dssp             HHHSSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH
T ss_pred             HHHhCCCHHHHHhhCHHHHHHHHHHHHhhhhhHHHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHH
Confidence            99999999999999999999999999998887778888888667888999999999999999999999999999999999


Q ss_pred             HHHhCCCCCCceEEEcccCCCCCCCCEEEecccccccCCCC
Q 024046          232 VVQDAPSYAGVEHVGGNMFESVPEGDAILMKVGNFENYQSH  272 (273)
Q Consensus       232 v~~~a~~~~ri~~~~gD~f~~~p~~D~~~l~~vLHd~~~~~  272 (273)
                      +++.++..+||+++.||+++++|.+|+|+++++||+|++++
T Consensus       238 ~~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~  278 (368)
T 3reo_A          238 VIQDAPAFSGVEHLGGDMFDGVPKGDAIFIKWICHDWSDEH  278 (368)
T ss_dssp             HHTTCCCCTTEEEEECCTTTCCCCCSEEEEESCGGGBCHHH
T ss_pred             HHHhhhhcCCCEEEecCCCCCCCCCCEEEEechhhcCCHHH
Confidence            99999988999999999999999889999999999999763

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=100.00  E-value=2.2e-40  Score=299.58  Aligned_cols=240  Identities=22%  Similarity=0.243  Sum_probs=216.6

Q ss_pred             hhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC
Q 024046           21 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE  100 (273)
Q Consensus        21 ~~~~~~~l~~~~~g~~~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~  100 (273)
                      ..++..+++++++|++.+++|++|+++|||++|.+ ||.|++|||+++|+    +++.++|+||+|++.|+|++    ++
T Consensus        19 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~-g~~t~~elA~~~g~----~~~~l~rlLr~l~~~g~l~~----~~   89 (348)
T 3lst_A           19 RLQSALALYEEAMGYTYAAALRAAAAVGVADHLVD-GPRTPAELAAATGT----DADALRRVLRLLAVRDVVRE----SD   89 (348)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT-SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE----ET
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC-CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCCEEe----cC
Confidence            45788899999999999999999999999999987 79999999999999    99999999999999999997    46


Q ss_pred             cceecChhchHhhcCCCCCccchhhcccCChhHHHHhhhHHHHHhcCCCcchhccCCchhhhhhcCcchHHHHHHHHHhc
Q 024046          101 RLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNH  180 (273)
Q Consensus       101 ~~y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~am~~~  180 (273)
                      +.|++|+.++.|..+.+ .++++++.+..++..+..|.+|++++++|+++|+..+|.++|+|+..+|+..+.|..+|...
T Consensus        90 ~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~  168 (348)
T 3lst_A           90 GRFALTDKGAALRSDSP-VPARAGILMFTDTMFWTMSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEALYYEGMETV  168 (348)
T ss_dssp             TEEEECTTTGGGSTTSS-SCSHHHHHHHTSHHHHHHHHTHHHHTCTTCCCHHHHHSSCHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CEEecCHHHHHHhcCCC-ccHHHHHHHhcCHHHHHHHHHHHHHHhcCCChhhHHhCCCHHHHHHhCHHHHHHHHHHHHHh
Confidence            89999999998865543 56788776655666789999999999999999999999899999999999999999999998


Q ss_pred             chhhHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCC-----CCCceEEEcccCCCCCC
Q 024046          181 STIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-----YAGVEHVGGNMFESVPE  255 (273)
Q Consensus       181 ~~~~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~-----~~ri~~~~gD~f~~~p~  255 (273)
                      +....+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.++..++.     .+||+++.+|++.++|.
T Consensus       169 ~~~~~~~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~p~  247 (348)
T 3lst_A          169 SAAEHLILARAGD-FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPH  247 (348)
T ss_dssp             HHTTHHHHHHHSC-CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTTTCCCC
T ss_pred             hhhhHHHHHHhCC-ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCCCCCCC
Confidence            8887888999998 98999999999999999999999999999999999998873321     26899999999988995


Q ss_pred             CCEEEecccccccCCC
Q 024046          256 GDAILMKVGNFENYQS  271 (273)
Q Consensus       256 ~D~~~l~~vLHd~~~~  271 (273)
                      .|+|+++++||+|+|+
T Consensus       248 ~D~v~~~~vlh~~~d~  263 (348)
T 3lst_A          248 ADVHVLKRILHNWGDE  263 (348)
T ss_dssp             CSEEEEESCGGGSCHH
T ss_pred             CcEEEEehhccCCCHH
Confidence            5999999999999986

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=100.00  E-value=3.5e-40  Score=299.29  Aligned_cols=251  Identities=26%  Similarity=0.430  Sum_probs=219.7

Q ss_pred             hhhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecccc
Q 024046           19 EEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS   97 (273)
Q Consensus        19 ~~~~~~~~~l~~~~~g~~~~~aL~~a~elglfd~L~~~-g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~   97 (273)
                      +++.++...+++++.|++.+++|++|+++|||++|... ||+|++|||+.+|+ ++.+++.++|+||+|++.|+|++...
T Consensus         5 ~~~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~eLA~~~g~-~~~~~~~l~rlLr~L~~~gll~~~~~   83 (358)
T 1zg3_A            5 SELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKL-HPSKVNILHRFLRLLTHNGFFAKTIV   83 (358)
T ss_dssp             SCCTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHTSCEEHHHHHHHTTC-CTTTHHHHHHHHHHHHHTTSEEEEEE
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcCCCcCHHHHHHhcCC-CCcchHHHHHHHHHHhhCCcEEEecc
Confidence            46778889999999999999999999999999999975 39999999999999 33358899999999999999997400


Q ss_pred             --CC-----CcceecChhchHhhcCCCCCccchhhcccCChhHHHHhhhHHHHHhcC--CCcchhccCCchhhhhhcCcc
Q 024046           98 --GG-----ERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEG--GIPFNRVHGMHIFEYASGNPR  168 (273)
Q Consensus        98 --~~-----~~~y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g--~~~~~~~~g~~~~~~~~~~~~  168 (273)
                        .+     ++.|++|+.++.|+.+.+ .+++.++.+..++.++..|.+|+++++++  +++|+..+|.++|+|+..+|+
T Consensus        84 ~~~~~~g~~~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~~p~  162 (358)
T 1zg3_A           84 KGKEGDEEEEIAYSLTPPSKLLISGKP-TCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSE  162 (358)
T ss_dssp             CCSSSSCCCEEEEEECHHHHTTCTTST-TCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHTSGGG
T ss_pred             cccccCCCCCCEEeCCHHHHHHhCCCC-ccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHhcChh
Confidence              01     479999999998876654 57888887766677788999999999998  678888889899999999999


Q ss_pred             hHH--HHHHHHHhcchhhHHHHHhhcc-cCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCCCCceEE
Q 024046          169 FNE--TYHEAMFNHSTIAMERILEHYE-GFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHV  245 (273)
Q Consensus       169 ~~~--~f~~am~~~~~~~~~~il~~~~-~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~~ri~~~  245 (273)
                      ..+  .|+.+|...+.... .+++.++ .+++..+|||||||+|.++..+++++|+++++++|+|.+++.++..++|+++
T Consensus       163 ~~~~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~  241 (358)
T 1zg3_A          163 SSTLSMFQDAMASDSRMFK-LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFV  241 (358)
T ss_dssp             HHHHHHHHHHHHHHHHTHH-HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEEE
T ss_pred             hhhHHHHHHHHhcccHHHH-HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEEE
Confidence            999  99999998877666 7888882 2778899999999999999999999999999999999999999877889999


Q ss_pred             EcccCCCCCCCCEEEecccccccCCCC
Q 024046          246 GGNMFESVPEGDAILMKVGNFENYQSH  272 (273)
Q Consensus       246 ~gD~f~~~p~~D~~~l~~vLHd~~~~~  272 (273)
                      .+|+++++|..|+|+++++||+|+|++
T Consensus       242 ~~d~~~~~~~~D~v~~~~vlh~~~d~~  268 (358)
T 1zg3_A          242 GGDMFKSIPSADAVLLKWVLHDWNDEQ  268 (358)
T ss_dssp             ECCTTTCCCCCSEEEEESCGGGSCHHH
T ss_pred             eCccCCCCCCceEEEEcccccCCCHHH
Confidence            999999888789999999999998753

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=100.00  E-value=1.3e-39  Score=294.91  Aligned_cols=251  Identities=25%  Similarity=0.402  Sum_probs=221.1

Q ss_pred             chhhhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           17 EEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        17 ~~~~~~~~~~~l~~~~~g~~~~~aL~~a~elglfd~L~~~-g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      +.++..++...+++++.|++.+++|++++++|||++|... ||.|++|||+++|+ ++.+++.++|+||+|++.|+|++.
T Consensus         9 ~~~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~ela~~~~~-~~~~~~~l~rlLr~L~~~gll~~~   87 (352)
T 1fp2_A            9 KPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQV-PSSKIGNVRRLMRYLAHNGFFEII   87 (352)
T ss_dssp             CSTHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTC-CGGGHHHHHHHHHHHHHTTSEEEE
T ss_pred             ChHHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcCCCccHHHHHHHhCc-CCCChHHHHHHHHHHHhCCeEEEe
Confidence            3467889999999999999999999999999999999975 49999999999999 222377999999999999999973


Q ss_pred             ccCCCcceecChhchHhhcCCCCCccchhhcccCChhHHHHhhhHHHHHh-cCCCcchhccCCchhhhhhcCcchHHHHH
Q 024046           96 VSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVM-EGGIPFNRVHGMHIFEYASGNPRFNETYH  174 (273)
Q Consensus        96 ~~~~~~~y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~-~g~~~~~~~~g~~~~~~~~~~~~~~~~f~  174 (273)
                      . .+++.|++|+.++.|+.+.+ .+++.++.+..++.++..|.+|+++++ +|+++|+..+|.++|+++..+|+..+.|.
T Consensus        88 ~-~~~~~y~~t~~s~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~  165 (352)
T 1fp2_A           88 T-KEEESYALTVASELLVRGSD-LCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFN  165 (352)
T ss_dssp             E-SSSEEEEECHHHHTTSTTSS-SCCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHH
T ss_pred             c-CCCCeEeCCHHHHHHhCCCC-ccHHHHHHHhcCchHHHHHHHHHHHHHhcCCChHHHHcCCCHHHHHHhChHHHHHHH
Confidence            1 03589999999998876654 578888877666777889999999999 88889998889999999999999999999


Q ss_pred             HHHHhcchhhHHHHHhhcc-cCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCCCCceEEEcccCCCC
Q 024046          175 EAMFNHSTIAMERILEHYE-GFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESV  253 (273)
Q Consensus       175 ~am~~~~~~~~~~il~~~~-~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~~ri~~~~gD~f~~~  253 (273)
                      .+|...+....+. ++.++ .+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.++|+++.+|+++++
T Consensus       166 ~~m~~~~~~~~~~-~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~  244 (352)
T 1fp2_A          166 DAMASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSI  244 (352)
T ss_dssp             HHHHHTHHHHHHH-HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCC
T ss_pred             HHHHhcchhhhhH-HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCCCcEEEeccccCCC
Confidence            9999888776666 77772 277889999999999999999999999999999999999999988788999999999988


Q ss_pred             CCCCEEEecccccccCCC
Q 024046          254 PEGDAILMKVGNFENYQS  271 (273)
Q Consensus       254 p~~D~~~l~~vLHd~~~~  271 (273)
                      |..|+|+++++||+|+|+
T Consensus       245 p~~D~v~~~~~lh~~~d~  262 (352)
T 1fp2_A          245 PNADAVLLKYILHNWTDK  262 (352)
T ss_dssp             CCCSEEEEESCGGGSCHH
T ss_pred             CCccEEEeehhhccCCHH
Confidence            878999999999999875

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=100.00  E-value=8.2e-40  Score=298.19  Aligned_cols=242  Identities=22%  Similarity=0.379  Sum_probs=218.4

Q ss_pred             hhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC
Q 024046           21 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE  100 (273)
Q Consensus        21 ~~~~~~~l~~~~~g~~~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~  100 (273)
                      ..+...++++++.|++.+++|++|+++|||++|.+ ||.|++|||+++|+    +++.++|+||+|++.|+|++.   ++
T Consensus        35 ~~~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~-g~~t~~eLA~~~g~----~~~~l~rlLr~L~~~g~l~~~---~~  106 (369)
T 3gwz_A           35 RAAAEETVNDILQGAWKARAIHVAVELGVPELLQE-GPRTATALAEATGA----HEQTLRRLLRLLATVGVFDDL---GH  106 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTT-SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSSEEC---SS
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcC-CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCCEEEe---CC
Confidence            34667889999999999999999999999999996 79999999999999    999999999999999999983   66


Q ss_pred             cc-eecChhchHhhcCCCCCccchhhcccCChhHHHHhhhHHHHHhcCCCcchhccCCchhhhhhcCcchHHHHHHHHHh
Q 024046          101 RL-YALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFN  179 (273)
Q Consensus       101 ~~-y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~am~~  179 (273)
                      +. |.+|+.++.|..+.+ .+++.++.+..++..+..|.+|++++++++++|...+|.++|+|+..+|+..+.|+.+|..
T Consensus       107 ~~~y~~t~~s~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~  185 (369)
T 3gwz_A          107 DDLFAQNALSAVLLPDPA-SPVATDARFQAAPWHWRAWEQLTHSVRTGEASFDVANGTSFWQLTHEDPKARELFNRAMGS  185 (369)
T ss_dssp             TTEEECCHHHHTTSCCTT-CHHHHHHHHHHSHHHHHHHHTHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CceEecCHHHHHHhcCCc-hhHHHHHHHcCCHHHHHHHHhHHHHHhCCCChhHhhcCCCHHHHHHhCHHHHHHHHHHHHH
Confidence            88 999999998765443 5677777765565577899999999999999999999989999999999999999999999


Q ss_pred             cchhhHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCC-------CCCceEEEcccCCC
Q 024046          180 HSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVGGNMFES  252 (273)
Q Consensus       180 ~~~~~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~-------~~ri~~~~gD~f~~  252 (273)
                      .+....+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.|++       .+||+++.+|++.+
T Consensus       186 ~~~~~~~~l~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~  264 (369)
T 3gwz_A          186 VSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFET  264 (369)
T ss_dssp             HHHHHHHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTTC
T ss_pred             HHhhhHHHHHHhCC-CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCCC
Confidence            88887888999988 88899999999999999999999999999999999999988874       27899999999988


Q ss_pred             CCC-CCEEEecccccccCCCC
Q 024046          253 VPE-GDAILMKVGNFENYQSH  272 (273)
Q Consensus       253 ~p~-~D~~~l~~vLHd~~~~~  272 (273)
                      +|. .|+|+++++||+|+|++
T Consensus       265 ~p~~~D~v~~~~vlh~~~d~~  285 (369)
T 3gwz_A          265 IPDGADVYLIKHVLHDWDDDD  285 (369)
T ss_dssp             CCSSCSEEEEESCGGGSCHHH
T ss_pred             CCCCceEEEhhhhhccCCHHH
Confidence            885 49999999999999763

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=100.00  E-value=1.3e-39  Score=297.10  Aligned_cols=259  Identities=40%  Similarity=0.686  Sum_probs=209.0

Q ss_pred             cCCCchhhhhHHHHHHH--HHHhhhhHHHHHHHHHHhChhHHHHhCC-C---CCHHHHHHHhCc--CCCCCcchHHHHHH
Q 024046           13 KKHEEEEEEEESYSHAM--QLAMGVVLPMATQAAIQLGVFEIIAKAG-E---LSAPEIAAQLQA--QNVKAPMMLDRMLR   84 (273)
Q Consensus        13 ~~~~~~~~~~~~~~~l~--~~~~g~~~~~aL~~a~elglfd~L~~~g-~---~t~~eLA~~~g~--~~~~~~~~l~rlL~   84 (273)
                      ..+...++..+++..++  +++.|++.+++|++|+++|||++|.+.| |   +|++|||+++|+  +++.+++.++|+||
T Consensus        11 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr   90 (372)
T 1fp1_D           11 NQISATSEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLR   90 (372)
T ss_dssp             --------CCHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHH
T ss_pred             cccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHH
Confidence            34455667778888888  9999999999999999999999999766 7   999999999997  24446889999999


Q ss_pred             HHhcCCceeccc---cCC--CcceecChhchHhhcCCCCCccchhhcccCChhHHHHhhhHHHHHhcC-CCcchhccCCc
Q 024046           85 LLVSHRVLECSV---SGG--ERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEG-GIPFNRVHGMH  158 (273)
Q Consensus        85 ~L~~~gll~~~~---~~~--~~~y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g-~~~~~~~~g~~  158 (273)
                      +|++.|+|++..   ..+  ++.|++|+.++.|+.+.+..++++++.+..++.++..|.+|+++++++ +++|+..+|.+
T Consensus        91 ~L~~~gll~~~~~~~~~g~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~  170 (372)
T 1fp1_D           91 LLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVT  170 (372)
T ss_dssp             HHHHTTSEEEEEEECTTSCEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC-----------
T ss_pred             HHhhCCceEecccccCCCCcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHhCCC
Confidence            999999999741   001  369999999998776643246788887766677788999999999998 88899888989


Q ss_pred             hhhhhhcCcchHHHHHHHHHhcchhhHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCC
Q 024046          159 IFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS  238 (273)
Q Consensus       159 ~~~~~~~~~~~~~~f~~am~~~~~~~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~  238 (273)
                      +|+++..+|+..+.|+.+|...+....+.+++.++.+++..+|||||||+|.++..+++++|+++++++|+|.+++.++.
T Consensus       171 ~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~  250 (372)
T 1fp1_D          171 KYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPP  250 (372)
T ss_dssp             ---CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC
T ss_pred             HHHHHHhCHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhh
Confidence            99999999999999999999888777788888886577889999999999999999999999999999999999999988


Q ss_pred             CCCceEEEcccCCCCCCCCEEEecccccccCCC
Q 024046          239 YAGVEHVGGNMFESVPEGDAILMKVGNFENYQS  271 (273)
Q Consensus       239 ~~ri~~~~gD~f~~~p~~D~~~l~~vLHd~~~~  271 (273)
                      .++|+++.+|+++++|.+|+|+++++||+|+|+
T Consensus       251 ~~~v~~~~~d~~~~~~~~D~v~~~~~lh~~~d~  283 (372)
T 1fp1_D          251 LSGIEHVGGDMFASVPQGDAMILKAVCHNWSDE  283 (372)
T ss_dssp             CTTEEEEECCTTTCCCCEEEEEEESSGGGSCHH
T ss_pred             cCCCEEEeCCcccCCCCCCEEEEecccccCCHH
Confidence            889999999999988878999999999999875

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=100.00  E-value=5.1e-40  Score=295.15  Aligned_cols=236  Identities=21%  Similarity=0.318  Sum_probs=211.8

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceec
Q 024046           26 SHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYAL  105 (273)
Q Consensus        26 ~~l~~~~~g~~~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~l  105 (273)
                      ..+++++.|++.+++|++|+++|||++|.+ ||.|++|||+++|+    +++.++|+||+|++.|++++.   +++.|.+
T Consensus         7 ~~l~~~~~g~~~~~~l~~a~~lglf~~l~~-g~~t~~elA~~~~~----~~~~l~rlLr~l~~~gl~~~~---~~~~y~~   78 (332)
T 3i53_A            7 HIGLRALADLATPMAVRVAATLRVADHIAA-GHRTAAEIASAAGA----HADSLDRLLRHLVAVGLFTRD---GQGVYGL   78 (332)
T ss_dssp             SSCHHHHTCCHHHHHHHHHHHHTHHHHHHT-TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC---TTSBEEE
T ss_pred             HHHHHHHHhhHHHHHHHHHHHcChHHHHhc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCcEEec---CCCeEEc
Confidence            457899999999999999999999999987 79999999999999    999999999999999999983   5789999


Q ss_pred             ChhchHhhcCCCCCccchhhcccCChhHH-HHhhhHHHHHhcCCCcchhccCCchhhhhhcCcchHHHHHHHHHhcchhh
Q 024046          106 NPVSKYFVSNKDGASLGHFMALPLDKVFM-ESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIA  184 (273)
Q Consensus       106 t~~s~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~e~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~am~~~~~~~  184 (273)
                      |+.++.|..+.. .+++.++.+..++..+ ..|.+|++++++++++|+..+|.++|+++..+|+..+.|..+|...+...
T Consensus        79 t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~  157 (332)
T 3i53_A           79 TEFGEQLRDDHA-AGKRKWLDMNSAVGRGDLGFVELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELD  157 (332)
T ss_dssp             CTTGGGGSTTCT-TCCHHHHCTTSHHHHHGGGGGGHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             CHhHHHHhcCCc-hhHHHHHHHcCCHhHHHHHHHHhHHHHhcCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHHHHhHHhh
Confidence            999998865543 5678888766544455 78999999999999999988998899999999999999999999887776


Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCC-------CCCceEEEcccCCCCCC-C
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVGGNMFESVPE-G  256 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~-------~~ri~~~~gD~f~~~p~-~  256 (273)
                      .+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.|++       .+||+++.+|++.++|. .
T Consensus       158 ~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~  236 (332)
T 3i53_A          158 YTGIAAKYD-WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGA  236 (332)
T ss_dssp             HTTGGGSSC-CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCSC
T ss_pred             HHHHHHhCC-CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCCCC
Confidence            777888887 88889999999999999999999999999999999999998864       27899999999988885 5


Q ss_pred             CEEEecccccccCCC
Q 024046          257 DAILMKVGNFENYQS  271 (273)
Q Consensus       257 D~~~l~~vLHd~~~~  271 (273)
                      |+|+++++||+|+|+
T Consensus       237 D~v~~~~vlh~~~~~  251 (332)
T 3i53_A          237 GGYVLSAVLHDWDDL  251 (332)
T ss_dssp             SEEEEESCGGGSCHH
T ss_pred             cEEEEehhhccCCHH
Confidence            999999999999985

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=100.00  E-value=1.3e-38  Score=286.01  Aligned_cols=235  Identities=23%  Similarity=0.346  Sum_probs=211.3

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcc
Q 024046           23 ESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL  102 (273)
Q Consensus        23 ~~~~~l~~~~~g~~~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~  102 (273)
                      .+...++++++|++.+++|++++++|||++|.+ ||.|++|||+.+|+    +++.++|+||+|++.|++++.   +++.
T Consensus         7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~-~~~t~~ela~~~~~----~~~~l~r~Lr~L~~~g~l~~~---~~~~   78 (334)
T 2ip2_A            7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIES-GIDSDETLAAAVGS----DAERIHRLMRLLVAFEIFQGD---TRDG   78 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT-TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---TTTE
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhC-CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCceEec---CCCe
Confidence            566899999999999999999999999999986 79999999999999    999999999999999999983   5689


Q ss_pred             eecChhchHhhcCCCCCccchhhcccCChhHHHHhhhHHHHHhcCCCcchhccCCchhhhhhcCcchHHHHHHHHHhcch
Q 024046          103 YALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHST  182 (273)
Q Consensus       103 y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~am~~~~~  182 (273)
                      |++|+.++.|. +.+ .+++.++.+..++.. ..|.+|++++++++++|+..+|.++|+++..+|+..+.|+.+| ..+.
T Consensus        79 y~~t~~s~~l~-~~~-~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m-~~~~  154 (334)
T 2ip2_A           79 YANTPTSHLLR-DVE-GSFRDMVLFYGEEFH-AAWTPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAM-KASN  154 (334)
T ss_dssp             EEECHHHHTTS-SST-TCSHHHHHHHTTHHH-HHTTTHHHHHHHCCCHHHHHHSSCHHHHHHHCHHHHHHHHHHH-GGGH
T ss_pred             EecCHHHHHHh-CCC-ccHHHHHHHhcCchh-hHHHHHHHHHhcCCChhhhhcCCCHHHHHhhChHHHHHHHHHH-HHHH
Confidence            99999998877 432 467887766655544 8999999999999999988889999999999999999999999 8877


Q ss_pred             hhHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCC-------CCceEEEcccCCCCCC
Q 024046          183 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFESVPE  255 (273)
Q Consensus       183 ~~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~-------~ri~~~~gD~f~~~p~  255 (273)
                      ...+.+++.++ +++ .+|||||||+|.++..+++++|+++++++|+|.+++.+++.       +||+++.+|+++++|.
T Consensus       155 ~~~~~~~~~~~-~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  232 (334)
T 2ip2_A          155 LAFHEIPRLLD-FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPS  232 (334)
T ss_dssp             HHHHHHHHHSC-CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTTCCCS
T ss_pred             HHHHHHHHhCC-CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCCCCCC
Confidence            77788888887 888 99999999999999999999999999999999888877642       6899999999998887


Q ss_pred             C-CEEEecccccccCCC
Q 024046          256 G-DAILMKVGNFENYQS  271 (273)
Q Consensus       256 ~-D~~~l~~vLHd~~~~  271 (273)
                      + |+|+++++||+|+++
T Consensus       233 ~~D~v~~~~vl~~~~~~  249 (334)
T 2ip2_A          233 NGDIYLLSRIIGDLDEA  249 (334)
T ss_dssp             SCSEEEEESCGGGCCHH
T ss_pred             CCCEEEEchhccCCCHH
Confidence            5 999999999999875

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=100.00  E-value=1.2e-37  Score=283.23  Aligned_cols=241  Identities=19%  Similarity=0.245  Sum_probs=202.1

Q ss_pred             CchhhhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHh-CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           16 EEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        16 ~~~~~~~~~~~~l~~~~~g~~~~~aL~~a~elglfd~L~~-~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      +++.++.++...+++++.|++.+++|++++++|||++|.+ .||+|++|||+++|+    +++.++|+||+|++.|+|++
T Consensus         7 ~~~~~~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~~~~t~~eLA~~~g~----~~~~l~rlLr~l~~~g~l~~   82 (363)
T 3dp7_A            7 KEQCTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGL----TRYAAQVLLEASLTIGTILL   82 (363)
T ss_dssp             CSCCCSTTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEE
T ss_pred             cCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcCCCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCeEe
Confidence            3456788899999999999999999999999999999997 469999999999999    99999999999999999987


Q ss_pred             cccCCCcceecChhchHhhcCCCCCccchhhcccCChhHHHHhhhHHHHHhcCCCcchhccC--CchhhhhhcCcchHH-
Q 024046           95 SVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHG--MHIFEYASGNPRFNE-  171 (273)
Q Consensus        95 ~~~~~~~~y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~~~~~~g--~~~~~~~~~~~~~~~-  171 (273)
                          .++.|++|+.++.|+.+++   ...++.+ ..+..++.|.+|++++++|++++...+|  .++|+++..+|+..+ 
T Consensus        83 ----~~~~y~~t~~s~~L~~~~~---~~~~~~~-~~~~~~~~~~~L~~~lr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~  154 (363)
T 3dp7_A           83 ----EEDRYVLAKAGWFLLNDKM---ARVNMEF-NHDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQK  154 (363)
T ss_dssp             ----ETTEEEECHHHHHHHHCHH---HHHHHHH-HHHTTHHHHTTHHHHHHHSSCGGGGGTCCCSSHHHHGGGSCHHHHH
T ss_pred             ----cCCEEecccchHHhhCCCc---ccchhee-ecHHhhhhHHHHHHHHhcCCCccccccCchHhHHHHHhhCHHHHHH
Confidence                4689999999988886543   1222222 2345678999999999999888888888  689999999988665 


Q ss_pred             ---HHHHHHHhcchhhHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCC-------CC
Q 024046          172 ---TYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AG  241 (273)
Q Consensus       172 ---~f~~am~~~~~~~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~-------~r  241 (273)
                         .|+.+|.....   ..+++.+. ..+..+|||||||+|.++..+++++|+++++++|+|.+++.|++.       +|
T Consensus       155 ~~~~f~~~~~~~~~---~~~l~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~  230 (363)
T 3dp7_A          155 SWFGFDHFYSDQSF---GKALEIVF-SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSER  230 (363)
T ss_dssp             HHHHHHHHTTCCCC---HHHHHHHG-GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGG
T ss_pred             HHHHHHHHhhhhhH---HHHHHHhc-ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccc
Confidence               36777765432   23444443 357789999999999999999999999999999999999887642       58


Q ss_pred             ceEEEcccCCC---CCCC-CEEEecccccccCCCC
Q 024046          242 VEHVGGNMFES---VPEG-DAILMKVGNFENYQSH  272 (273)
Q Consensus       242 i~~~~gD~f~~---~p~~-D~~~l~~vLHd~~~~~  272 (273)
                      |+++.+|++++   +|.+ |+|+++++||+|++++
T Consensus       231 v~~~~~d~~~~~~~~p~~~D~v~~~~vlh~~~~~~  265 (363)
T 3dp7_A          231 IHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEE  265 (363)
T ss_dssp             EEEEECCCCSSSCCCCCCCSEEEEESCSTTSCHHH
T ss_pred             eEEEEccccccCCCCCCCcCEEEEechhhhCCHHH
Confidence            99999999994   6754 9999999999999763

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=100.00  E-value=1.7e-36  Score=275.98  Aligned_cols=240  Identities=20%  Similarity=0.303  Sum_probs=213.1

Q ss_pred             hHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCc
Q 024046           22 EESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER  101 (273)
Q Consensus        22 ~~~~~~l~~~~~g~~~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~  101 (273)
                      .+....+++++.|++.+++|++++++|||+.|.. ||.|++|||+.+|+    +++.+.|+||+|++.|+|++.   +++
T Consensus        14 ~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~-~~~t~~eLA~~~g~----~~~~l~r~Lr~L~~~Gll~~~---~~~   85 (374)
T 1qzz_A           14 DQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA-GADTLAGLADRTDT----HPQALSRLVRHLTVVGVLEGG---EKQ   85 (374)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT-TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEECC---CC-
T ss_pred             chHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhC-CCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCEEEe---CCC
Confidence            4567789999999999999999999999999975 79999999999999    999999999999999999973   456


Q ss_pred             --ceecChhchHhhcCCCCCccchhhcccCChhHH-HHhhhHHHHHhcCCCcchhccCCchhhhhhcCcchHHHHHHHHH
Q 024046          102 --LYALNPVSKYFVSNKDGASLGHFMALPLDKVFM-ESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMF  178 (273)
Q Consensus       102 --~y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~e~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~am~  178 (273)
                        .|.+|+.+..|..+.+ .+++.++.+..++..+ ..|..|++.+++++++++..+|.++|++...+|+..+.|..+|.
T Consensus        86 ~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~  164 (374)
T 1qzz_A           86 GRPLRPTRLGMLLADGHP-AQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMS  164 (374)
T ss_dssp             CCCCEECTTGGGGSTTCT-TCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHHHHHHTCG
T ss_pred             CeEEEEChHHHhhcCCCc-ccHHHHHHHcCChhhHHHHHHHHHHHHhcCCChhhhhhCCCHHHHHhhChHHHHHHHHHHH
Confidence              8999999988876653 5778888776544456 78999999999999899888899999999889999999999999


Q ss_pred             hcchhhHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCC-------CCceEEEcccCC
Q 024046          179 NHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE  251 (273)
Q Consensus       179 ~~~~~~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~-------~ri~~~~gD~f~  251 (273)
                      ..+....+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.|++.       +||+++.+|+++
T Consensus       165 ~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  243 (374)
T 1qzz_A          165 CDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFK  243 (374)
T ss_dssp             GGSTTTTHHHHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred             HhhHhHHHHHHHhCC-CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCC
Confidence            887776778888887 888899999999999999999999999999999999999887642       489999999999


Q ss_pred             CCCCC-CEEEecccccccCCC
Q 024046          252 SVPEG-DAILMKVGNFENYQS  271 (273)
Q Consensus       252 ~~p~~-D~~~l~~vLHd~~~~  271 (273)
                      ++|.+ |+|+++++||+|+++
T Consensus       244 ~~~~~~D~v~~~~vl~~~~~~  264 (374)
T 1qzz_A          244 PLPVTADVVLLSFVLLNWSDE  264 (374)
T ss_dssp             CCSCCEEEEEEESCGGGSCHH
T ss_pred             cCCCCCCEEEEeccccCCCHH
Confidence            88875 999999999999875

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=100.00  E-value=9.3e-36  Score=269.94  Aligned_cols=239  Identities=23%  Similarity=0.356  Sum_probs=212.3

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcc
Q 024046           23 ESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL  102 (273)
Q Consensus        23 ~~~~~l~~~~~g~~~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~  102 (273)
                      ...+++++++.|++.+++|.+++++|||+.|.. ||.|++|||+.+|+    +++.+.|+||+|++.|+|.+.   +++.
T Consensus        18 ~~~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~-~~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~~~~~---~~g~   89 (360)
T 1tw3_A           18 IDALRTLIRLGSLHTPMVVRTAATLRLVDHILA-GARTVKALAARTDT----RPEALLRLIRHLVAIGLLEED---APGE   89 (360)
T ss_dssp             HHHHHHHHHHHCSHHHHHHHHHHHTTHHHHHHT-TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---ETTE
T ss_pred             cchHHHHHHHHhHHHHHHHHHHHHhCHHHHHhC-CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEec---CCCe
Confidence            446788999999999999999999999999975 79999999999999    999999999999999999973   5689


Q ss_pred             eecChhchHhhcCCCCCccchhhcccCChh-HHHHhhhHHHHHhcCCCcchhccCCchhhhhhcCcchHHHHHHHHHhcc
Q 024046          103 YALNPVSKYFVSNKDGASLGHFMALPLDKV-FMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHS  181 (273)
Q Consensus       103 y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~e~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~am~~~~  181 (273)
                      |++|+.+..|..+.+ .+++.++.+...+. .+..|..|.+.+++|+++++..+|.++|+++..+|+....|..+|...+
T Consensus        90 y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~p~~~~~f~~~~~~~~  168 (360)
T 1tw3_A           90 FVPTEVGELLADDHP-AAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQ  168 (360)
T ss_dssp             EEECTTGGGGSTTST-TCHHHHTCTTSHHHHHGGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTT
T ss_pred             EEeCHHHHHHhcCCc-hhHHHHHHHhcCchhHHHHHHHHHHHHHcCCCHHHHhcCCCHHHHHHhChHHHHHHHHHHHHHH
Confidence            999999988876653 57788777654443 5678999999999998888888899999999888999999999999887


Q ss_pred             hhhHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCC-------CCceEEEcccCCCCC
Q 024046          182 TIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFESVP  254 (273)
Q Consensus       182 ~~~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~-------~ri~~~~gD~f~~~p  254 (273)
                      ....+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.|++.       +||+++.+|+++++|
T Consensus       169 ~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  247 (360)
T 1tw3_A          169 DVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLP  247 (360)
T ss_dssp             TTTTHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCS
T ss_pred             HHhHHHHHHhCC-CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCCCC
Confidence            776778888887 888899999999999999999999999999999999998877642       489999999999888


Q ss_pred             CC-CEEEecccccccCCC
Q 024046          255 EG-DAILMKVGNFENYQS  271 (273)
Q Consensus       255 ~~-D~~~l~~vLHd~~~~  271 (273)
                      .+ |+|++.++||+|+++
T Consensus       248 ~~~D~v~~~~vl~~~~~~  265 (360)
T 1tw3_A          248 RKADAIILSFVLLNWPDH  265 (360)
T ss_dssp             SCEEEEEEESCGGGSCHH
T ss_pred             CCccEEEEcccccCCCHH
Confidence            75 999999999999875

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=100.00  E-value=2e-35  Score=268.05  Aligned_cols=233  Identities=21%  Similarity=0.354  Sum_probs=201.1

Q ss_pred             hhhhhHHHHHHHHHHh-hhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccc
Q 024046           18 EEEEEESYSHAMQLAM-GVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV   96 (273)
Q Consensus        18 ~~~~~~~~~~l~~~~~-g~~~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~   96 (273)
                      +++..++..++++++. |++.+++|++++++|||+.|.+ ||.|++|||+++|+    +++.++|+||+|++.|+|++. 
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~-~~~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~~~-   97 (359)
T 1x19_A           24 NNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE-GPKDLATLAADTGS----VPPRLEMLLETLRQMRVINLE-   97 (359)
T ss_dssp             CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT-CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-
T ss_pred             ccccCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC-CCCCHHHHHHHhCc----ChHHHHHHHHHHHhCCCeEee-
Confidence            4567778889999986 8999999999999999999987 89999999999999    999999999999999999973 


Q ss_pred             cCCCcceecChhchHhhcCCCC---CccchhhcccCChhHHHHhhhHHHHHhcCCCcchhccCCchhhhhhcCcc---hH
Q 024046           97 SGGERLYALNPVSKYFVSNKDG---ASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPR---FN  170 (273)
Q Consensus        97 ~~~~~~y~lt~~s~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~~~~~~g~~~~~~~~~~~~---~~  170 (273)
                         ++.|++|+.+..++.+..+   .++++++.+. ....+..|.+|+++++++++          |+++..+|+   ..
T Consensus        98 ---~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~l~~g~~----------~~~~~~~p~~~~~~  163 (359)
T 1x19_A           98 ---DGKWSLTEFADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQKN----------FKGQVPYPPVTRED  163 (359)
T ss_dssp             ---TTEEEECHHHHHHSSSSCSBTTBCCHHHHHHH-HHHHHHTGGGHHHHHTTSCC----------CCCSSCSSCCSHHH
T ss_pred             ---CCeEecCHHHHHHhcCCCCCccccHHHHHHHH-HHHHHHHHHHHHHHHhcCCC----------CcccccCchhhHHH
Confidence               4699999976544444333   4677777654 35577899999999988653          666777888   89


Q ss_pred             HHHHHHHHhcch-hhHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCC-------CCCc
Q 024046          171 ETYHEAMFNHST-IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGV  242 (273)
Q Consensus       171 ~~f~~am~~~~~-~~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~-------~~ri  242 (273)
                      +.|..+|...+. ...+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.|++       .+||
T Consensus       164 ~~f~~~m~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v  242 (359)
T 1x19_A          164 NLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRM  242 (359)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHCC-CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCTTTE
T ss_pred             HHHHHHHHHhccchhHHHHHHhcC-CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCCCE
Confidence            999999999887 77788899888 88889999999999999999999999999999999999988764       2579


Q ss_pred             eEEEcccCC-CCCCCCEEEecccccccCCC
Q 024046          243 EHVGGNMFE-SVPEGDAILMKVGNFENYQS  271 (273)
Q Consensus       243 ~~~~gD~f~-~~p~~D~~~l~~vLHd~~~~  271 (273)
                      +++.+|+++ ++|.+|+|++.++||+|+|+
T Consensus       243 ~~~~~d~~~~~~~~~D~v~~~~vlh~~~d~  272 (359)
T 1x19_A          243 RGIAVDIYKESYPEADAVLFCRILYSANEQ  272 (359)
T ss_dssp             EEEECCTTTSCCCCCSEEEEESCGGGSCHH
T ss_pred             EEEeCccccCCCCCCCEEEEechhccCCHH
Confidence            999999998 56667999999999999874

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=100.00  E-value=1.5e-34  Score=259.15  Aligned_cols=229  Identities=17%  Similarity=0.174  Sum_probs=201.1

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceec
Q 024046           26 SHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYAL  105 (273)
Q Consensus        26 ~~l~~~~~g~~~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~l  105 (273)
                      ..+++++.|++.+++|++++++|||++|.+ ||.|++|||+++|+    +++.++|+||+|++.|+|++    .++.|++
T Consensus         8 ~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~-~~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~l~~----~~~~y~~   78 (335)
T 2r3s_A            8 ALFFNTVNAYQRSAAIKAAVELNVFTAISQ-GIESSQSLAQKCQT----SERGMRMLCDYLVIIGFMTK----QAEGYRL   78 (335)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHTTHHHHHTT-SEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE----ETTEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcChHHHHhc-CCCCHHHHHHHhCC----CchHHHHHHHHHHhcCCeEe----cCCEEec
Confidence            678999999999999999999999999997 89999999999999    99999999999999999986    4689999


Q ss_pred             Chhc-hHhhcCCCCCccchhhcccCChhHHHHhhhHHHHHhcCCCcchhccCCchhhhhhcCcchHHHHHHHHHhcchhh
Q 024046          106 NPVS-KYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIA  184 (273)
Q Consensus       106 t~~s-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~am~~~~~~~  184 (273)
                      |+.+ ..+..+. +.+++.++.+..++..+..|.+|++.+++++++|+     + |+++..+++..+.|...|.......
T Consensus        79 t~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~  151 (335)
T 2r3s_A           79 TSDSAMFLDRQS-KFYVGDAIEFLLSPMITNGFNDLTAAVLKGGTAIS-----S-EGTLSPEHPVWVQFAKAMSPMMANP  151 (335)
T ss_dssp             CHHHHHHTCTTS-TTCCGGGHHHHTCHHHHGGGTTHHHHHHHTSCCST-----T-TGGGSTTCTHHHHHHHHSGGGGHHH
T ss_pred             CHHHHHHhccCC-cHHHHHHHHHhcchhhHHHHHhHHHHHhcCCCCCC-----C-cccccCCHHHHHHHHHHHHHHHhhh
Confidence            9999 4555443 35678888776555678899999999999887654     3 7777888889999999999888777


Q ss_pred             HHHHHhhcccC--CCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCC-------CCceEEEcccCC-CCC
Q 024046          185 MERILEHYEGF--QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVP  254 (273)
Q Consensus       185 ~~~il~~~~~~--~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~-------~ri~~~~gD~f~-~~p  254 (273)
                      ...+++.++ +  ++..+|||||||+|.++..+++++|+.+++++|++.+++.|++.       +||+++.+|+++ ++|
T Consensus       152 ~~~~~~~~~-~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  230 (335)
T 2r3s_A          152 AQLIAQLVN-ENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYG  230 (335)
T ss_dssp             HHHHHHHHT-C--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCC
T ss_pred             HHHHHHhcc-cccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCC
Confidence            778888887 7  78899999999999999999999999999999999888877652       579999999998 677


Q ss_pred             CC-CEEEecccccccCCC
Q 024046          255 EG-DAILMKVGNFENYQS  271 (273)
Q Consensus       255 ~~-D~~~l~~vLHd~~~~  271 (273)
                      .+ |+|+++++||+|+++
T Consensus       231 ~~~D~v~~~~~l~~~~~~  248 (335)
T 2r3s_A          231 NDYDLVLLPNFLHHFDVA  248 (335)
T ss_dssp             SCEEEEEEESCGGGSCHH
T ss_pred             CCCcEEEEcchhccCCHH
Confidence            65 999999999999765

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=100.00  E-value=6.6e-34  Score=257.05  Aligned_cols=228  Identities=15%  Similarity=0.227  Sum_probs=189.4

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcce
Q 024046           24 SYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLY  103 (273)
Q Consensus        24 ~~~~l~~~~~g~~~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y  103 (273)
                      ....+++++.|++.+++|++|+++|||++|..  |.|++|||+++|+    +++.++|+||+|++.|+|++.    ++.|
T Consensus        24 ~p~~l~~~~~~~~~~~~l~~a~~lgif~~l~~--~~t~~elA~~~~~----~~~~l~rlLr~L~~~gll~~~----~~~y   93 (352)
T 3mcz_A           24 SVVDLVKLSDQYRQSAILHYAVADKLFDLTQT--GRTPAEVAASFGM----VEGKAAILLHALAALGLLTKE----GDAF   93 (352)
T ss_dssp             SHHHHHHHHHTHHHHHHHHHHHHTTHHHHTTS--CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----TTEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCChHHHhCC--CCCHHHHHHHhCc----ChHHHHHHHHHHHHCCCeEec----CCee
Confidence            33449999999999999999999999999964  9999999999999    999999999999999999983    4789


Q ss_pred             ecChhchHhhcCCCCCccchhhcccCChhHHHHhhhHHHHHhcCCCc-chhccCCchhhhhhcCcchHHHHHHHHHhcch
Q 024046          104 ALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIP-FNRVHGMHIFEYASGNPRFNETYHEAMFNHST  182 (273)
Q Consensus       104 ~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~-~~~~~g~~~~~~~~~~~~~~~~f~~am~~~~~  182 (273)
                      .+|+.++.++.+..+.+++.++.+.  ...+..|.+|++++++|++. |+..      .++..+++..+.|..+|.....
T Consensus        94 ~~t~~s~~~l~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~~------~~~~~~~~~~~~f~~~m~~~~~  165 (352)
T 3mcz_A           94 RNTALTERYLTTTSADYIGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQE------SRFAHDTRARDAFNDAMVRLSQ  165 (352)
T ss_dssp             EECHHHHHHHSTTCTTCCHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSHH------HHTTTCHHHHHHHHHHHHHHHH
T ss_pred             ecCHHHHhhccCCChhhHHHHHHHh--HHHHHHHHHHHHHHhCCCCCCcccc------cccccCHHHHHHHHHHHHhhhh
Confidence            9999998666555556677666532  33567899999999988654 2211      1235678888999999987332


Q ss_pred             hhHHHHHhhcccCCC-cceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCC-------CCceEEEcccCCC--
Q 024046          183 IAMERILEHYEGFQN-VERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFES--  252 (273)
Q Consensus       183 ~~~~~il~~~~~~~~-~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~-------~ri~~~~gD~f~~--  252 (273)
                      . +..+++.++ +.+ ..+|||||||+|.++..+++++|+++++++|+|.+++.++..       +||+++.+|++++  
T Consensus       166 ~-~~~~l~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  243 (352)
T 3mcz_A          166 P-MVDVVSELG-VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARN  243 (352)
T ss_dssp             H-HHHHHHTCG-GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGG
T ss_pred             h-HHHHHHhCC-CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcc
Confidence            2 237888888 776 899999999999999999999999999999999988877642       6899999999995  


Q ss_pred             -CCCC-CEEEecccccccCCC
Q 024046          253 -VPEG-DAILMKVGNFENYQS  271 (273)
Q Consensus       253 -~p~~-D~~~l~~vLHd~~~~  271 (273)
                       .|.+ |+|+++++||+|+|+
T Consensus       244 ~~~~~~D~v~~~~vlh~~~~~  264 (352)
T 3mcz_A          244 FEGGAADVVMLNDCLHYFDAR  264 (352)
T ss_dssp             GTTCCEEEEEEESCGGGSCHH
T ss_pred             cCCCCccEEEEecccccCCHH
Confidence             5555 999999999999875

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.39  E-value=2.7e-12  Score=116.59  Aligned_cols=188  Identities=11%  Similarity=0.046  Sum_probs=119.6

Q ss_pred             ChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhhcCCCCCccchhh-c
Q 024046           48 GVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFM-A  126 (273)
Q Consensus        48 glfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~~~~~~~~~~~~~-~  126 (273)
                      ++|..| . +|.|+.|||..+|+    +++.++++|+.|.+.|+++.    .++ |++|+.++.++...........+ .
T Consensus        47 ~ll~~L-~-~~~t~~eLa~~~g~----~~~~v~~~L~~l~~~gll~~----~~~-~~lt~~~~~~l~~~~~~~~~~~~~~  115 (373)
T 2qm3_A           47 NVLSAV-L-ASDDIWRIVDLSEE----PLPLVVAILESLNELGYVTF----EDG-VKLTEKGEELVAEYGIGKRYDFTCP  115 (373)
T ss_dssp             HHHHHH-H-HCSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEC----SSS-SEECHHHHHHHHHHTCCCCCC----
T ss_pred             HHHHHh-c-CCCCHHHHHHHhCC----ChHHHHHHHHHHhhCCcEEE----CCC-EEECHHHHHHHHhcCccccccccch
Confidence            789999 5 69999999999999    99999999999999999986    224 99999876544332111111111 0


Q ss_pred             ccC-----ChhHHHHhhhHHHHHhcCCCcchhccCCchhhhhhcCcchHHHHHHHHHhcchhhHHHHHhhcccCCCcceE
Q 024046          127 LPL-----DKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERL  201 (273)
Q Consensus       127 ~~~-----~~~~~~~~~~L~e~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~am~~~~~~~~~~il~~~~~~~~~~~v  201 (273)
                      ...     ...+...|..+.+.++....+ .     ..|+-.  ...........+         .... .. .....+|
T Consensus       116 ~~~g~g~~~~~~~~~~~~l~~~~~~~~~~-~-----~~~~~~--~~~~~~~~~~~l---------~~~~-~~-~~~~~~V  176 (373)
T 2qm3_A          116 HCQGKTVDLQAFADLLEQFREIVKDRPEP-L-----HEFDQA--YVTPETTVARVI---------LMHT-RG-DLENKDI  176 (373)
T ss_dssp             --------CGGGHHHHHHHHHHHTTCCCC-C-----GGGTCC--CBCHHHHHHHHH---------HHHH-TT-CSTTCEE
T ss_pred             hhcCCCcchhhhHHHHHHHHHHHhcCCcc-c-----hhcCCe--ecCHHHHHHHHH---------HHhh-cC-CCCCCEE
Confidence            000     011122344555555532211 0     111100  001111111110         0011 11 2245899


Q ss_pred             EEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCCCCC----C-CEEEeccccc
Q 024046          202 VDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE----G-DAILMKVGNF  266 (273)
Q Consensus       202 vDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~p~----~-D~~~l~~vLH  266 (273)
                      |||| |+|.++..+++..|+.+++++|+ |.+++.|+++      ++|+++.+|+++++|.    . |+|++...+|
T Consensus       177 LDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~~  252 (373)
T 2qm3_A          177 FVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPPET  252 (373)
T ss_dssp             EEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCCSS
T ss_pred             EEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCCCc
Confidence            9999 99999999999999889999999 8999887653      4899999999986552    3 9999976554

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.04  E-value=2.1e-10  Score=99.11  Aligned_cols=77  Identities=13%  Similarity=0.226  Sum_probs=66.0

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHC--CCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC-CCCCCCEEEecc
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKY--PQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEGDAILMKV  263 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~--P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~p~~D~~~l~~  263 (273)
                      .++..+|||||||+|.++..+++++  |+++++++|+ |.+++.|++.       .+|+++.+|+.+ |.+..|++++..
T Consensus        68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~  147 (261)
T 4gek_A           68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF  147 (261)
T ss_dssp             CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence            4677899999999999999999985  6789999998 8889887642       589999999987 555569999999


Q ss_pred             cccccCCC
Q 024046          264 GNFENYQS  271 (273)
Q Consensus       264 vLHd~~~~  271 (273)
                      +||..+++
T Consensus       148 ~l~~~~~~  155 (261)
T 4gek_A          148 TLQFLEPS  155 (261)
T ss_dssp             CGGGSCHH
T ss_pred             eeeecCch
Confidence            99988754

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.02  E-value=4.7e-10  Score=94.42  Aligned_cols=85  Identities=14%  Similarity=0.196  Sum_probs=69.6

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----CCCceEEEcccCC-CCCCC-CEE
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE-SVPEG-DAI  259 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~ri~~~~gD~f~-~~p~~-D~~  259 (273)
                      .++..+....+..+|||||||+|.++..+++++|..+++++|+ |.+++.++.    .++++++.+|+.+ +.+.. |+|
T Consensus        34 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v  113 (234)
T 3dtn_A           34 VSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMV  113 (234)
T ss_dssp             HHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEEE
T ss_pred             HHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceEE
Confidence            3444443234568999999999999999999999999999998 888877654    2589999999998 45544 999


Q ss_pred             EecccccccCCC
Q 024046          260 LMKVGNFENYQS  271 (273)
Q Consensus       260 ~l~~vLHd~~~~  271 (273)
                      ++..++|.++++
T Consensus       114 ~~~~~l~~~~~~  125 (234)
T 3dtn_A          114 VSALSIHHLEDE  125 (234)
T ss_dssp             EEESCGGGSCHH
T ss_pred             EEeCccccCCHH
Confidence            999999999764

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.98  E-value=2.3e-09  Score=92.11  Aligned_cols=82  Identities=15%  Similarity=0.180  Sum_probs=70.0

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCCCCceEEEcccCC-CCCCC--CEEEe
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILM  261 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gD~f~-~~p~~--D~~~l  261 (273)
                      ..+++.++ ..+..+|||||||+|.++..+++  |..+++++|+ |.+++.++...+++++.+|+.. ++|.+  |+|++
T Consensus        24 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~  100 (261)
T 3ege_A           24 NAIINLLN-LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVIS  100 (261)
T ss_dssp             HHHHHHHC-CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEE
T ss_pred             HHHHHHhC-CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEE
Confidence            44555555 56789999999999999999998  7889999998 8889988877799999999987 56643  99999


Q ss_pred             cccccccCC
Q 024046          262 KVGNFENYQ  270 (273)
Q Consensus       262 ~~vLHd~~~  270 (273)
                      .+++|++++
T Consensus       101 ~~~l~~~~~  109 (261)
T 3ege_A          101 ILAIHHFSH  109 (261)
T ss_dssp             ESCGGGCSS
T ss_pred             cchHhhccC
Confidence            999999865

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.97  E-value=2.1e-09  Score=93.43  Aligned_cols=77  Identities=16%  Similarity=0.228  Sum_probs=65.9

Q ss_pred             CCcceEEEecCCc---cHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----CCCceEEEcccCCC------------CC-
Q 024046          196 QNVERLVDVGGGF---GVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFES------------VP-  254 (273)
Q Consensus       196 ~~~~~vvDVGGG~---G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~ri~~~~gD~f~~------------~p-  254 (273)
                      .+..+|||||||+   |.++..+.+.+|+.+++.+|+ |.+++.|+.    .++++++.+|++++            ++ 
T Consensus        76 ~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~  155 (274)
T 2qe6_A           76 AGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDF  155 (274)
T ss_dssp             TCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCT
T ss_pred             cCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCC
Confidence            3568999999999   999988889999999999999 999988764    27899999999862            23 


Q ss_pred             -CCCEEEecccccccCCCC
Q 024046          255 -EGDAILMKVGNFENYQSH  272 (273)
Q Consensus       255 -~~D~~~l~~vLHd~~~~~  272 (273)
                       ..|++++..+||++++++
T Consensus       156 ~~~d~v~~~~vlh~~~d~~  174 (274)
T 2qe6_A          156 SRPAAIMLVGMLHYLSPDV  174 (274)
T ss_dssp             TSCCEEEETTTGGGSCTTT
T ss_pred             CCCEEEEEechhhhCCcHH
Confidence             349999999999999863

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.96  E-value=1.1e-09  Score=91.42  Aligned_cols=72  Identities=17%  Similarity=0.250  Sum_probs=61.2

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCC-CCCCC--CEEEeccccc
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG--DAILMKVGNF  266 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~-~~p~~--D~~~l~~vLH  266 (273)
                      +...+|||||||+|.++..+++++|  +++++|+ |.+++.++..     ++++++.+|+.+ +++.+  |+|++..++|
T Consensus        37 ~~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~  114 (227)
T 1ve3_A           37 KKRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV  114 (227)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred             CCCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchH
Confidence            3478999999999999999999988  7899998 8888877643     789999999988 56643  9999999977


Q ss_pred             ccC
Q 024046          267 ENY  269 (273)
Q Consensus       267 d~~  269 (273)
                      .++
T Consensus       115 ~~~  117 (227)
T 1ve3_A          115 HFE  117 (227)
T ss_dssp             GCC
T ss_pred             hCC
Confidence            665

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=98.93  E-value=1.6e-09  Score=89.64  Aligned_cols=82  Identities=17%  Similarity=0.296  Sum_probs=67.6

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC-CCCCC
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG  256 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~p~~  256 (273)
                      ..+++.++ .++. +|||||||+|.++..++++ |..+++++|+ |.+++.++..       ++++++.+|+.+ +++.+
T Consensus        34 ~~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  110 (219)
T 3dlc_A           34 ENIINRFG-ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDN  110 (219)
T ss_dssp             HHHHHHHC-CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTT
T ss_pred             HHHHHhcC-CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcc
Confidence            44555555 4444 9999999999999999999 8889999998 8888777642       589999999998 67653


Q ss_pred             --CEEEecccccccCC
Q 024046          257 --DAILMKVGNFENYQ  270 (273)
Q Consensus       257 --D~~~l~~vLHd~~~  270 (273)
                        |+|++..++|++++
T Consensus       111 ~~D~v~~~~~l~~~~~  126 (219)
T 3dlc_A          111 YADLIVSRGSVFFWED  126 (219)
T ss_dssp             CEEEEEEESCGGGCSC
T ss_pred             cccEEEECchHhhccC
Confidence              99999999999854

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=98.93  E-value=1.5e-09  Score=92.88  Aligned_cols=84  Identities=18%  Similarity=0.305  Sum_probs=68.9

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCC-CCCCC
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG  256 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~~p~~  256 (273)
                      ...+++.++ .....+|||||||+|.++..++++.+  +++++|+ |.+++.|+..      ++++++.+|+.+ ++|.+
T Consensus        26 ~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~  102 (260)
T 1vl5_A           26 LAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDE  102 (260)
T ss_dssp             HHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTT
T ss_pred             HHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCC
Confidence            345666665 66778999999999999999999987  7999998 8888877542      679999999987 67743


Q ss_pred             --CEEEecccccccCCC
Q 024046          257 --DAILMKVGNFENYQS  271 (273)
Q Consensus       257 --D~~~l~~vLHd~~~~  271 (273)
                        |+|++..++|.++|.
T Consensus       103 ~fD~V~~~~~l~~~~d~  119 (260)
T 1vl5_A          103 RFHIVTCRIAAHHFPNP  119 (260)
T ss_dssp             CEEEEEEESCGGGCSCH
T ss_pred             CEEEEEEhhhhHhcCCH
Confidence              999999999999763

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=98.89  E-value=2.5e-09  Score=88.89  Aligned_cols=84  Identities=23%  Similarity=0.316  Sum_probs=71.0

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhCCCC------CCceEEEcccCC-CCCCC
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG  256 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~~p~~  256 (273)
                      ..+++.++ ..+..+|||||||+|.++..+++.. |+.+++++|. |.+++.++..      ++++++.+|+.. +++.+
T Consensus        27 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~  105 (219)
T 3dh0_A           27 EKVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDN  105 (219)
T ss_dssp             HHHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSS
T ss_pred             HHHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCC
Confidence            45566665 6777899999999999999999997 8899999998 8888877642      589999999987 56654


Q ss_pred             --CEEEecccccccCC
Q 024046          257 --DAILMKVGNFENYQ  270 (273)
Q Consensus       257 --D~~~l~~vLHd~~~  270 (273)
                        |+|++..++|++++
T Consensus       106 ~fD~v~~~~~l~~~~~  121 (219)
T 3dh0_A          106 TVDFIFMAFTFHELSE  121 (219)
T ss_dssp             CEEEEEEESCGGGCSS
T ss_pred             CeeEEEeehhhhhcCC
Confidence              99999999999865

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.88  E-value=8.3e-09  Score=85.38  Aligned_cols=84  Identities=14%  Similarity=0.166  Sum_probs=68.4

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC--CCceEEEcccCCCCCCC--CEEE
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFESVPEG--DAIL  260 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~--~ri~~~~gD~f~~~p~~--D~~~  260 (273)
                      ..+++.+...++..+|||||||+|.++..++++  ..+++++|. |.+++.++..  ++++++.+|+.+..+.+  |+|+
T Consensus        35 ~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~  112 (218)
T 3ou2_A           35 PAALERLRAGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVF  112 (218)
T ss_dssp             HHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEE
T ss_pred             HHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEE
Confidence            344555443556679999999999999999999  568999998 8888887653  68999999998865543  9999


Q ss_pred             ecccccccCCC
Q 024046          261 MKVGNFENYQS  271 (273)
Q Consensus       261 l~~vLHd~~~~  271 (273)
                      +.++||+++++
T Consensus       113 ~~~~l~~~~~~  123 (218)
T 3ou2_A          113 FAHWLAHVPDD  123 (218)
T ss_dssp             EESCGGGSCHH
T ss_pred             EechhhcCCHH
Confidence            99999998864

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=98.86  E-value=5.6e-09  Score=91.10  Aligned_cols=83  Identities=16%  Similarity=0.299  Sum_probs=68.6

Q ss_pred             HHHHhhc----ccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC-C
Q 024046          186 ERILEHY----EGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-S  252 (273)
Q Consensus       186 ~~il~~~----~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~  252 (273)
                      ..+++.+    + +.+..+|||||||+|.++..++++++ .+++++|+ |.+++.|+..       ++|+++.+|+.. |
T Consensus        68 ~~l~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~  145 (297)
T 2o57_A           68 EWLASELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKFG-VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP  145 (297)
T ss_dssp             HHHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS
T ss_pred             HHHHHHhhhccC-CCCCCEEEEeCCCCCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCC
Confidence            4455555    4 66778999999999999999999974 58999998 7777776542       689999999998 6


Q ss_pred             CCCC--CEEEecccccccCC
Q 024046          253 VPEG--DAILMKVGNFENYQ  270 (273)
Q Consensus       253 ~p~~--D~~~l~~vLHd~~~  270 (273)
                      +|.+  |+|++..++|++++
T Consensus       146 ~~~~~fD~v~~~~~l~~~~~  165 (297)
T 2o57_A          146 CEDNSYDFIWSQDAFLHSPD  165 (297)
T ss_dssp             SCTTCEEEEEEESCGGGCSC
T ss_pred             CCCCCEeEEEecchhhhcCC
Confidence            6654  99999999999876

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.86  E-value=4.3e-09  Score=89.65  Aligned_cols=83  Identities=14%  Similarity=0.155  Sum_probs=69.7

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-CCCceEEEcccCCCCCCC--CEEEec
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFESVPEG--DAILMK  262 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-~~ri~~~~gD~f~~~p~~--D~~~l~  262 (273)
                      .+++.++ .....+|||||||+|.++..+++++|..+++++|+ |.+++.++. .++++++.+|+.+..+.+  |+|++.
T Consensus        24 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~  102 (259)
T 2p35_A           24 DLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLYAN  102 (259)
T ss_dssp             HHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEEEE
T ss_pred             HHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEEEe
Confidence            4556555 56678999999999999999999999999999998 888887765 378999999998722443  999999


Q ss_pred             ccccccCC
Q 024046          263 VGNFENYQ  270 (273)
Q Consensus       263 ~vLHd~~~  270 (273)
                      .++|..++
T Consensus       103 ~~l~~~~~  110 (259)
T 2p35_A          103 AVFQWVPD  110 (259)
T ss_dssp             SCGGGSTT
T ss_pred             CchhhCCC
Confidence            99998865

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=98.86  E-value=5.4e-09  Score=90.14  Aligned_cols=77  Identities=16%  Similarity=0.339  Sum_probs=67.1

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCC-CCCCC--CEEEeccc
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG--DAILMKVG  264 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~~p~~--D~~~l~~v  264 (273)
                      +.+..+|||||||+|.++..+++.+|..+++++|. |.+++.++..      ++++++.+|+.. +++.+  |+|++.++
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  114 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV  114 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence            56778999999999999999999999999999998 8888877542      679999999998 55543  99999999


Q ss_pred             ccccCCC
Q 024046          265 NFENYQS  271 (273)
Q Consensus       265 LHd~~~~  271 (273)
                      ||++++.
T Consensus       115 l~~~~~~  121 (276)
T 3mgg_A          115 LEHLQSP  121 (276)
T ss_dssp             GGGCSCH
T ss_pred             hhhcCCH
Confidence            9998764

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=98.85  E-value=8e-09  Score=88.82  Aligned_cols=83  Identities=13%  Similarity=0.250  Sum_probs=69.2

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC-CCCCC
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG  256 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~p~~  256 (273)
                      ..+++.++ ..+..+|||||||+|.++..+++++ ..+++++|+ |.+++.++..       ++++++.+|+.+ ++|.+
T Consensus        51 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  128 (273)
T 3bus_A           51 DEMIALLD-VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDA  128 (273)
T ss_dssp             HHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTT
T ss_pred             HHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCC
Confidence            45666666 6677899999999999999999988 579999998 7777766532       589999999988 66653


Q ss_pred             --CEEEecccccccCC
Q 024046          257 --DAILMKVGNFENYQ  270 (273)
Q Consensus       257 --D~~~l~~vLHd~~~  270 (273)
                        |+|++..++|+.++
T Consensus       129 ~fD~v~~~~~l~~~~~  144 (273)
T 3bus_A          129 SFDAVWALESLHHMPD  144 (273)
T ss_dssp             CEEEEEEESCTTTSSC
T ss_pred             CccEEEEechhhhCCC
Confidence              99999999999865

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=98.85  E-value=8.7e-09  Score=87.67  Aligned_cols=84  Identities=14%  Similarity=0.144  Sum_probs=68.3

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC-CCCC
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPE  255 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~p~  255 (273)
                      ...++..++ ..+..+|||||||+|.++..+++.+ ..+++++|+ |.+++.|++.       ++|+++.+|+.+ +.+.
T Consensus        25 ~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  102 (256)
T 1nkv_A           25 YATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE  102 (256)
T ss_dssp             HHHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred             HHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCC
Confidence            344556555 6677899999999999999999998 578999998 8888877542       589999999987 3333


Q ss_pred             C-CEEEecccccccCC
Q 024046          256 G-DAILMKVGNFENYQ  270 (273)
Q Consensus       256 ~-D~~~l~~vLHd~~~  270 (273)
                      . |+|++..++|.+++
T Consensus       103 ~fD~V~~~~~~~~~~~  118 (256)
T 1nkv_A          103 KCDVAACVGATWIAGG  118 (256)
T ss_dssp             CEEEEEEESCGGGTSS
T ss_pred             CCCEEEECCChHhcCC
Confidence            3 99999999998875

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=98.83  E-value=8e-09  Score=87.43  Aligned_cols=83  Identities=19%  Similarity=0.314  Sum_probs=68.8

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCC-CCCCC
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG  256 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~~p~~  256 (273)
                      ...+++.++ ..+..+|||||||+|.++..+++.++  +++++|+ |.+++.++..      ++++++.+|+.+ +++.+
T Consensus        10 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~   86 (239)
T 1xxl_A           10 LGLMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDD   86 (239)
T ss_dssp             HHHHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTT
T ss_pred             cchHHHHhC-cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCC
Confidence            344566666 77889999999999999999999986  7899998 8888776542      689999999987 56543


Q ss_pred             --CEEEecccccccCC
Q 024046          257 --DAILMKVGNFENYQ  270 (273)
Q Consensus       257 --D~~~l~~vLHd~~~  270 (273)
                        |+|++..++|++++
T Consensus        87 ~fD~v~~~~~l~~~~~  102 (239)
T 1xxl_A           87 SFDIITCRYAAHHFSD  102 (239)
T ss_dssp             CEEEEEEESCGGGCSC
T ss_pred             cEEEEEECCchhhccC
Confidence              99999999999976

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=98.83  E-value=3.7e-09  Score=87.99  Aligned_cols=77  Identities=17%  Similarity=0.074  Sum_probs=64.1

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----------CCceEEEcccCC-CCCC--CCEE
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----------AGVEHVGGNMFE-SVPE--GDAI  259 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----------~ri~~~~gD~f~-~~p~--~D~~  259 (273)
                      ..+..+|||||||+|.++..+++++|..+++++|+ |.+++.++..           ++++++.+|+.. +.+.  .|+|
T Consensus        27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v  106 (217)
T 3jwh_A           27 QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAA  106 (217)
T ss_dssp             HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEE
T ss_pred             hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEE
Confidence            34567999999999999999999999999999998 8888877542           289999999865 3432  3999


Q ss_pred             EecccccccCCC
Q 024046          260 LMKVGNFENYQS  271 (273)
Q Consensus       260 ~l~~vLHd~~~~  271 (273)
                      ++..+||+++++
T Consensus       107 ~~~~~l~~~~~~  118 (217)
T 3jwh_A          107 TVIEVIEHLDLS  118 (217)
T ss_dssp             EEESCGGGCCHH
T ss_pred             eeHHHHHcCCHH
Confidence            999999988754

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=98.83  E-value=6.3e-09  Score=90.48  Aligned_cols=83  Identities=16%  Similarity=0.211  Sum_probs=67.6

Q ss_pred             HHhhcccCCCcceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhCCCC-----CCceEEEcccCC-CCCCC-CE
Q 024046          188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-DA  258 (273)
Q Consensus       188 il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~-~~p~~-D~  258 (273)
                      +++.+....+..+|||||||+|.++..+++.+|. .+++++|+ |.+++.++..     .+++++.+|+.+ +.+.. |+
T Consensus        13 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~   92 (284)
T 3gu3_A           13 LVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDI   92 (284)
T ss_dssp             HHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEE
T ss_pred             HHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeE
Confidence            3343322567789999999999999999999995 89999998 7777766542     389999999997 45544 99


Q ss_pred             EEecccccccCC
Q 024046          259 ILMKVGNFENYQ  270 (273)
Q Consensus       259 ~~l~~vLHd~~~  270 (273)
                      |++..++|..+|
T Consensus        93 v~~~~~l~~~~~  104 (284)
T 3gu3_A           93 AICHAFLLHMTT  104 (284)
T ss_dssp             EEEESCGGGCSS
T ss_pred             EEECChhhcCCC
Confidence            999999998876

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.83  E-value=9.8e-09  Score=86.80  Aligned_cols=83  Identities=18%  Similarity=0.293  Sum_probs=66.6

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCCCCceEEEcccCC---CCCCC--CE
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE---SVPEG--DA  258 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gD~f~---~~p~~--D~  258 (273)
                      ...+...++.+++..+|||||||+|.++..+++.  ..+++++|+ |.+++.++..  ++++.+|+.+   ++|.+  |+
T Consensus        29 ~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~  104 (240)
T 3dli_A           29 KARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDG  104 (240)
T ss_dssp             HHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSE
T ss_pred             HHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeE
Confidence            3344444443556789999999999999999998  446899998 8888888754  9999999977   66654  99


Q ss_pred             EEecccccccCCC
Q 024046          259 ILMKVGNFENYQS  271 (273)
Q Consensus       259 ~~l~~vLHd~~~~  271 (273)
                      |++.++||+++++
T Consensus       105 i~~~~~l~~~~~~  117 (240)
T 3dli_A          105 VMISHFVEHLDPE  117 (240)
T ss_dssp             EEEESCGGGSCGG
T ss_pred             EEECCchhhCCcH
Confidence            9999999999865

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=98.82  E-value=3.6e-09  Score=88.11  Aligned_cols=76  Identities=16%  Similarity=0.108  Sum_probs=64.3

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----------CCceEEEcccCC-CCCC--CCEEE
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----------AGVEHVGGNMFE-SVPE--GDAIL  260 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----------~ri~~~~gD~f~-~~p~--~D~~~  260 (273)
                      .+..+|||||||+|.++..+++++|..+++++|+ |.+++.++..           ++++++.+|+.. +.+.  .|+|+
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~  107 (219)
T 3jwg_A           28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT  107 (219)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence            4568999999999999999999999999999998 8888877642           289999999965 3332  39999


Q ss_pred             ecccccccCCC
Q 024046          261 MKVGNFENYQS  271 (273)
Q Consensus       261 l~~vLHd~~~~  271 (273)
                      +..++|.++++
T Consensus       108 ~~~~l~~~~~~  118 (219)
T 3jwg_A          108 VIEVIEHLDEN  118 (219)
T ss_dssp             EESCGGGCCHH
T ss_pred             EHHHHHhCCHH
Confidence            99999998754

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=98.82  E-value=6.2e-09  Score=89.68  Aligned_cols=72  Identities=13%  Similarity=0.064  Sum_probs=63.5

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCCCCceEEEcccCC-CCCCC--CEEEecccccccC
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILMKVGNFENY  269 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gD~f~-~~p~~--D~~~l~~vLHd~~  269 (273)
                      +...+|||||||+|.++..|++.+.  +++++|. |.+++.|+..++|+++.+|+-+ ++|.+  |+|++..++|..+
T Consensus        38 ~~~~~vLDvGcGtG~~~~~l~~~~~--~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~  113 (257)
T 4hg2_A           38 PARGDALDCGCGSGQASLGLAEFFE--RVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFD  113 (257)
T ss_dssp             SCSSEEEEESCTTTTTHHHHHTTCS--EEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCC
T ss_pred             CCCCCEEEEcCCCCHHHHHHHHhCC--EEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhh
Confidence            3457899999999999999999875  5899998 8899999988999999999987 77765  9999999998664

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=98.81  E-value=8.4e-09  Score=87.99  Aligned_cols=82  Identities=21%  Similarity=0.370  Sum_probs=68.9

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC----CCceEEEcccCC-CCCCC--C
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPEG--D  257 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~----~ri~~~~gD~f~-~~p~~--D  257 (273)
                      ..+++.++ ..+..+|||||||+|.++..+++++ ..+++++|+ |.+++.++..    ++++++.+|+.+ ++|.+  |
T Consensus        45 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD  122 (266)
T 3ujc_A           45 KKILSDIE-LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFD  122 (266)
T ss_dssp             HHHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEE
T ss_pred             HHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEE
Confidence            45556655 6677899999999999999999998 679999998 8888777643    689999999988 66643  9


Q ss_pred             EEEecccccccC
Q 024046          258 AILMKVGNFENY  269 (273)
Q Consensus       258 ~~~l~~vLHd~~  269 (273)
                      +|++.+++|+++
T Consensus       123 ~v~~~~~l~~~~  134 (266)
T 3ujc_A          123 LIYSRDAILALS  134 (266)
T ss_dssp             EEEEESCGGGSC
T ss_pred             EEeHHHHHHhcC
Confidence            999999999984

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=98.80  E-value=2.4e-08  Score=87.98  Aligned_cols=85  Identities=18%  Similarity=0.183  Sum_probs=69.0

Q ss_pred             hHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC-CCC
Q 024046          184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVP  254 (273)
Q Consensus       184 ~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~p  254 (273)
                      ....+++.++.+.+..+|||||||+|.++..+++++ ..+++++|+ |.+++.|++.       ++++++.+|+.+ +++
T Consensus       104 ~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  182 (312)
T 3vc1_A          104 QAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFD  182 (312)
T ss_dssp             HHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCC
T ss_pred             HHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCC
Confidence            344566665435677899999999999999999987 578999998 8888877642       589999999998 566


Q ss_pred             CC--CEEEecccccccC
Q 024046          255 EG--DAILMKVGNFENY  269 (273)
Q Consensus       255 ~~--D~~~l~~vLHd~~  269 (273)
                      .+  |+|++..++|.++
T Consensus       183 ~~~fD~V~~~~~l~~~~  199 (312)
T 3vc1_A          183 KGAVTASWNNESTMYVD  199 (312)
T ss_dssp             TTCEEEEEEESCGGGSC
T ss_pred             CCCEeEEEECCchhhCC
Confidence            43  9999999999873

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=98.80  E-value=1.4e-08  Score=86.51  Aligned_cols=81  Identities=15%  Similarity=0.247  Sum_probs=66.3

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC-CCCCC-
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-  256 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~p~~-  256 (273)
                      .++..+..+++..+|||||||+|.++..+++++|. +++++|+ |.+++.++..       +|++++.+|+.. +++.+ 
T Consensus        36 ~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  114 (257)
T 3f4k_A           36 KAVSFINELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEE  114 (257)
T ss_dssp             HHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTC
T ss_pred             HHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCC
Confidence            34455433566789999999999999999999996 8999998 8888776542       579999999976 56543 


Q ss_pred             -CEEEeccccccc
Q 024046          257 -DAILMKVGNFEN  268 (273)
Q Consensus       257 -D~~~l~~vLHd~  268 (273)
                       |+|++..++|+.
T Consensus       115 fD~v~~~~~l~~~  127 (257)
T 3f4k_A          115 LDLIWSEGAIYNI  127 (257)
T ss_dssp             EEEEEEESCSCCC
T ss_pred             EEEEEecChHhhc
Confidence             999999999987

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.79  E-value=1.7e-08  Score=85.03  Aligned_cols=82  Identities=16%  Similarity=0.175  Sum_probs=65.6

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC---CCceEEEcccCC-CCCCC--CEE
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPEG--DAI  259 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~---~ri~~~~gD~f~-~~p~~--D~~  259 (273)
                      .+...++ .....+|||||||+|.++..++++.+ .+++++|. |.+++.++..   .+++++.+|+.+ +++.+  |+|
T Consensus        34 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v  111 (243)
T 3bkw_A           34 ALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLA  111 (243)
T ss_dssp             HHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEE
T ss_pred             HHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEE
Confidence            4555554 44678999999999999999999843 37999998 8888877643   579999999987 55543  999


Q ss_pred             EecccccccCC
Q 024046          260 LMKVGNFENYQ  270 (273)
Q Consensus       260 ~l~~vLHd~~~  270 (273)
                      ++..++|++++
T Consensus       112 ~~~~~l~~~~~  122 (243)
T 3bkw_A          112 YSSLALHYVED  122 (243)
T ss_dssp             EEESCGGGCSC
T ss_pred             EEeccccccch
Confidence            99999998864

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.79  E-value=1.1e-08  Score=86.93  Aligned_cols=83  Identities=14%  Similarity=0.163  Sum_probs=67.8

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC---CCceEEEcccCC-CCCCC--CE
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPEG--DA  258 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~---~ri~~~~gD~f~-~~p~~--D~  258 (273)
                      +.+.+.++ ..+..+|||||||+|.++..+++..+. +++++|+ |.+++.++..   ++++++.+|+.. +++.+  |+
T Consensus        34 ~~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~  111 (253)
T 3g5l_A           34 HELKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNV  111 (253)
T ss_dssp             HHHHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEE
T ss_pred             HHHHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEE
Confidence            34555554 446789999999999999999999876 8999998 8888877643   789999999987 56543  99


Q ss_pred             EEecccccccCC
Q 024046          259 ILMKVGNFENYQ  270 (273)
Q Consensus       259 ~~l~~vLHd~~~  270 (273)
                      |++..++|++.+
T Consensus       112 v~~~~~l~~~~~  123 (253)
T 3g5l_A          112 VLSSLALHYIAS  123 (253)
T ss_dssp             EEEESCGGGCSC
T ss_pred             EEEchhhhhhhh
Confidence            999999999854

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=98.77  E-value=1.5e-08  Score=86.99  Aligned_cols=80  Identities=14%  Similarity=0.187  Sum_probs=66.1

Q ss_pred             HHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC-CCCCC--
Q 024046          188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG--  256 (273)
Q Consensus       188 il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~p~~--  256 (273)
                      ++..+..+.+..+|||||||+|.++..+++. |..+++++|+ |.+++.++..       ++|+++.+|+.+ +++.+  
T Consensus        37 ~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  115 (267)
T 3kkz_A           37 ALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEEL  115 (267)
T ss_dssp             HHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCE
T ss_pred             HHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCE
Confidence            4444433567789999999999999999999 8889999998 8888776542       679999999987 55543  


Q ss_pred             CEEEeccccccc
Q 024046          257 DAILMKVGNFEN  268 (273)
Q Consensus       257 D~~~l~~vLHd~  268 (273)
                      |+|++..++|.+
T Consensus       116 D~i~~~~~~~~~  127 (267)
T 3kkz_A          116 DLIWSEGAIYNI  127 (267)
T ss_dssp             EEEEESSCGGGT
T ss_pred             EEEEEcCCceec
Confidence            999999999987

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.77  E-value=3e-08  Score=86.73  Aligned_cols=73  Identities=21%  Similarity=0.178  Sum_probs=63.7

Q ss_pred             CCcceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhCCC--------CCCceEEEcccCC-CCCC------C--
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS--------YAGVEHVGGNMFE-SVPE------G--  256 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~--------~~ri~~~~gD~f~-~~p~------~--  256 (273)
                      .+..+|||||||+|.++..+++++ |..+++++|+ |.+++.|+.        .++|+++.+|+.+ +++.      +  
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  114 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI  114 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence            467899999999999999999998 9999999998 888887754        3689999999987 5444      3  


Q ss_pred             CEEEeccccccc
Q 024046          257 DAILMKVGNFEN  268 (273)
Q Consensus       257 D~~~l~~vLHd~  268 (273)
                      |+|++..++|..
T Consensus       115 D~V~~~~~l~~~  126 (299)
T 3g5t_A          115 DMITAVECAHWF  126 (299)
T ss_dssp             EEEEEESCGGGS
T ss_pred             eEEeHhhHHHHh
Confidence            999999999987

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=98.76  E-value=1.8e-08  Score=88.22  Aligned_cols=83  Identities=17%  Similarity=0.176  Sum_probs=69.6

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCCCC-
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEG-  256 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p~~-  256 (273)
                      ..+++.++ .++..+|||||||+|.++..+++++| .+++++|+ |.+++.|++.       ++|+++.+|+..- +.. 
T Consensus        62 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~f  138 (302)
T 3hem_A           62 KLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DEPV  138 (302)
T ss_dssp             HHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CCCC
T ss_pred             HHHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-CCCc
Confidence            45566665 67778999999999999999999998 89999998 8888877642       4899999999764 544 


Q ss_pred             CEEEecccccccCCC
Q 024046          257 DAILMKVGNFENYQS  271 (273)
Q Consensus       257 D~~~l~~vLHd~~~~  271 (273)
                      |+|++..++|+++|+
T Consensus       139 D~v~~~~~~~~~~d~  153 (302)
T 3hem_A          139 DRIVSLGAFEHFADG  153 (302)
T ss_dssp             SEEEEESCGGGTTCC
T ss_pred             cEEEEcchHHhcCcc
Confidence            999999999999774

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.74  E-value=1.3e-08  Score=85.73  Aligned_cols=74  Identities=11%  Similarity=0.090  Sum_probs=61.8

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC--CCceEEEcccCCCCCCC--CEEEecccccccCC
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFESVPEG--DAILMKVGNFENYQ  270 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~--~ri~~~~gD~f~~~p~~--D~~~l~~vLHd~~~  270 (273)
                      .+..+|||||||+|.++..+++++|  +++++|+ |.+++.|++.  .+++++.+|+.+..+.+  |+|++.++||+.+|
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~  118 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD  118 (250)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred             cCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcC
Confidence            3557899999999999999999988  5899998 7888777643  28999999998754443  99999999999876


Q ss_pred             C
Q 024046          271 S  271 (273)
Q Consensus       271 ~  271 (273)
                      .
T Consensus       119 ~  119 (250)
T 2p7i_A          119 P  119 (250)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.72  E-value=2.4e-08  Score=86.42  Aligned_cols=82  Identities=17%  Similarity=0.147  Sum_probs=67.8

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-CCceEEEcccCC-CCCCC-CEEEe
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG-DAILM  261 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-~ri~~~~gD~f~-~~p~~-D~~~l  261 (273)
                      ..+++.++ ..+..+|||||||+|.++..+++  |..+++++|+ |.+++.++.. ++++++.+|+.. +.+.. |+|++
T Consensus        47 ~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~  123 (279)
T 3ccf_A           47 EDLLQLLN-PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVFS  123 (279)
T ss_dssp             CHHHHHHC-CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEEE
T ss_pred             HHHHHHhC-CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEEE
Confidence            34555555 56778999999999999999999  7889999998 8888877653 789999999987 44444 99999


Q ss_pred             cccccccCC
Q 024046          262 KVGNFENYQ  270 (273)
Q Consensus       262 ~~vLHd~~~  270 (273)
                      .+++|..+|
T Consensus       124 ~~~l~~~~d  132 (279)
T 3ccf_A          124 NAMLHWVKE  132 (279)
T ss_dssp             ESCGGGCSC
T ss_pred             cchhhhCcC
Confidence            999998765

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.72  E-value=1.5e-08  Score=87.11  Aligned_cols=85  Identities=11%  Similarity=0.178  Sum_probs=67.0

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hH------HHHhCCCC-------CCceEEEcc-c
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PH------VVQDAPSY-------AGVEHVGGN-M  249 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~------v~~~a~~~-------~ri~~~~gD-~  249 (273)
                      ..+++.++ ..+..+|||||||+|.++..+++++ |+.+++++|+ |.      +++.|++.       ++|+++.+| +
T Consensus        33 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  111 (275)
T 3bkx_A           33 LAIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNL  111 (275)
T ss_dssp             HHHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCT
T ss_pred             HHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence            34566665 6677899999999999999999997 8899999998 43      56655432       589999998 6


Q ss_pred             CC---CCCCC--CEEEecccccccCCC
Q 024046          250 FE---SVPEG--DAILMKVGNFENYQS  271 (273)
Q Consensus       250 f~---~~p~~--D~~~l~~vLHd~~~~  271 (273)
                      +.   +++.+  |+|++..++|++++.
T Consensus       112 ~~~~~~~~~~~fD~v~~~~~l~~~~~~  138 (275)
T 3bkx_A          112 SDDLGPIADQHFDRVVLAHSLWYFASA  138 (275)
T ss_dssp             TTCCGGGTTCCCSEEEEESCGGGSSCH
T ss_pred             hhccCCCCCCCEEEEEEccchhhCCCH
Confidence            54   34443  999999999998764

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=98.72  E-value=1.6e-08  Score=83.96  Aligned_cols=82  Identities=15%  Similarity=0.152  Sum_probs=66.5

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC--CCceEEEcccCC-CCCCC-CEEEe
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFE-SVPEG-DAILM  261 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~--~ri~~~~gD~f~-~~p~~-D~~~l  261 (273)
                      .+++.+. ..+..+|||||||+|.++..++++  ..+++++|. |.+++.++..  ++++++.+|+.+ +.+.. |+|++
T Consensus        36 ~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~~  112 (220)
T 3hnr_A           36 DILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVS  112 (220)
T ss_dssp             HHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEEE
T ss_pred             HHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEEE
Confidence            3444444 446689999999999999999998  568999998 8888877653  489999999998 55543 99999


Q ss_pred             cccccccCCC
Q 024046          262 KVGNFENYQS  271 (273)
Q Consensus       262 ~~vLHd~~~~  271 (273)
                      .++||.++++
T Consensus       113 ~~~l~~~~~~  122 (220)
T 3hnr_A          113 TYAFHHLTDD  122 (220)
T ss_dssp             ESCGGGSCHH
T ss_pred             CcchhcCChH
Confidence            9999998764

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=98.71  E-value=4e-08  Score=83.68  Aligned_cols=74  Identities=9%  Similarity=0.089  Sum_probs=62.1

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-----CCCceEEEcccCC-CCCCC--CEEEecccc
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----YAGVEHVGGNMFE-SVPEG--DAILMKVGN  265 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~ri~~~~gD~f~-~~p~~--D~~~l~~vL  265 (273)
                      ..+..+|||||||+|.++..++++  ..+++++|. |.+++.++.     .++++++.+|+.. +++.+  |+|++..++
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  114 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW  114 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence            556789999999999999999988  467999998 777776653     2789999999977 55543  999999999


Q ss_pred             cccCC
Q 024046          266 FENYQ  270 (273)
Q Consensus       266 Hd~~~  270 (273)
                      |..+|
T Consensus       115 ~~~~~  119 (263)
T 2yqz_A          115 HLVPD  119 (263)
T ss_dssp             GGCTT
T ss_pred             hhcCC
Confidence            98865

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.71  E-value=9e-09  Score=85.20  Aligned_cols=80  Identities=14%  Similarity=0.111  Sum_probs=63.6

Q ss_pred             HHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC------------------CCCceEEEcc
Q 024046          188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------------------YAGVEHVGGN  248 (273)
Q Consensus       188 il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------------------~~ri~~~~gD  248 (273)
                      +++.+. .+...+|||||||+|..+..|+++  ..+++++|+ |.+++.|++                  .++|+++.+|
T Consensus        14 ~~~~l~-~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d   90 (203)
T 1pjz_A           14 YWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGD   90 (203)
T ss_dssp             HHHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEEC
T ss_pred             HHHhcc-cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECc
Confidence            334444 566789999999999999999998  468999998 888887753                  2579999999


Q ss_pred             cCC-CCC--CC-CEEEecccccccCC
Q 024046          249 MFE-SVP--EG-DAILMKVGNFENYQ  270 (273)
Q Consensus       249 ~f~-~~p--~~-D~~~l~~vLHd~~~  270 (273)
                      +++ +.+  .. |+|+.+.++|..++
T Consensus        91 ~~~l~~~~~~~fD~v~~~~~l~~l~~  116 (203)
T 1pjz_A           91 FFALTARDIGHCAAFYDRAAMIALPA  116 (203)
T ss_dssp             CSSSTHHHHHSEEEEEEESCGGGSCH
T ss_pred             cccCCcccCCCEEEEEECcchhhCCH
Confidence            998 443  23 99999999987764

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=98.70  E-value=4.1e-08  Score=82.68  Aligned_cols=74  Identities=18%  Similarity=0.233  Sum_probs=63.4

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC---CCceEEEcccCC-CCCCC--CEEEecccccc
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPEG--DAILMKVGNFE  267 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~---~ri~~~~gD~f~-~~p~~--D~~~l~~vLHd  267 (273)
                      .++..+|||||||+|.++..++++  ..+++++|. |.+++.++..   ++++++.+|+.+ ++|.+  |+|++.+++|+
T Consensus        51 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  128 (242)
T 3l8d_A           51 VKKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEW  128 (242)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTS
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhh
Confidence            346689999999999999999998  568999998 8888877654   789999999998 56643  99999999998


Q ss_pred             cCC
Q 024046          268 NYQ  270 (273)
Q Consensus       268 ~~~  270 (273)
                      .++
T Consensus       129 ~~~  131 (242)
T 3l8d_A          129 TEE  131 (242)
T ss_dssp             SSC
T ss_pred             ccC
Confidence            865

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.70  E-value=2.6e-08  Score=87.06  Aligned_cols=44  Identities=18%  Similarity=0.341  Sum_probs=38.7

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS  238 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~  238 (273)
                      +....+|||||||+|.++..+++++|..+++++|+ |.+++.|+.
T Consensus        44 ~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~   88 (292)
T 3g07_A           44 WFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQ   88 (292)
T ss_dssp             GTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHH
T ss_pred             hcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            33578999999999999999999999999999998 887876653

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.70  E-value=3.7e-08  Score=85.40  Aligned_cols=83  Identities=19%  Similarity=0.172  Sum_probs=67.4

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCCCC-
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEG-  256 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p~~-  256 (273)
                      ..+++.++ ..+..+|||||||+|.++..++++++. +++++|+ |..++.++..       ++++++.+|+.. +|.. 
T Consensus        54 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~f  130 (287)
T 1kpg_A           54 DLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-FDEPV  130 (287)
T ss_dssp             HHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-CCCCC
T ss_pred             HHHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CCCCe
Confidence            45566665 667789999999999999999988764 9999998 7877776542       589999999964 5543 


Q ss_pred             CEEEecccccccCCC
Q 024046          257 DAILMKVGNFENYQS  271 (273)
Q Consensus       257 D~~~l~~vLHd~~~~  271 (273)
                      |+|++..+||+++++
T Consensus       131 D~v~~~~~l~~~~~~  145 (287)
T 1kpg_A          131 DRIVSIGAFEHFGHE  145 (287)
T ss_dssp             SEEEEESCGGGTCTT
T ss_pred             eEEEEeCchhhcChH
Confidence            999999999998654

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.70  E-value=1.8e-08  Score=85.43  Aligned_cols=83  Identities=14%  Similarity=0.196  Sum_probs=67.4

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC----CCceEEEcccCC-CCCCC--C
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPEG--D  257 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~----~ri~~~~gD~f~-~~p~~--D  257 (273)
                      ..+++.++ ..+..+|||||||+|.++..++++. ..+++++|. |.+++.++..    ++++++.+|+.. +++.+  |
T Consensus        83 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD  160 (254)
T 1xtp_A           83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD  160 (254)
T ss_dssp             HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred             HHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeE
Confidence            34556555 5567899999999999999999987 457899998 8888877642    689999999987 55543  9


Q ss_pred             EEEecccccccCC
Q 024046          258 AILMKVGNFENYQ  270 (273)
Q Consensus       258 ~~~l~~vLHd~~~  270 (273)
                      +|++.++||++++
T Consensus       161 ~v~~~~~l~~~~~  173 (254)
T 1xtp_A          161 LIVIQWTAIYLTD  173 (254)
T ss_dssp             EEEEESCGGGSCH
T ss_pred             EEEEcchhhhCCH
Confidence            9999999999865

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.70  E-value=1.5e-08  Score=83.28  Aligned_cols=73  Identities=16%  Similarity=0.120  Sum_probs=62.7

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-CCCceEEEcccCC-CCCCC--CEEEecccccccCCCC
Q 024046          198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFE-SVPEG--DAILMKVGNFENYQSH  272 (273)
Q Consensus       198 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-~~ri~~~~gD~f~-~~p~~--D~~~l~~vLHd~~~~~  272 (273)
                      ..+|||||||+|.++..++++  ..+++++|. |.+++.++. .++++++.+|+.. +++.+  |+|++.++||.+++++
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~  119 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE  119 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred             CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence            689999999999999999998  457999998 888888775 4789999999987 56543  9999999999997543

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.68  E-value=9.4e-09  Score=90.29  Aligned_cols=77  Identities=17%  Similarity=0.222  Sum_probs=65.7

Q ss_pred             CCCcceEEEecCCccHHHHHHH-HHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC-CCCCC-CEEEecc
Q 024046          195 FQNVERLVDVGGGFGVTLSMIT-SKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-DAILMKV  263 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~-~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~p~~-D~~~l~~  263 (273)
                      +++..+|||||||+|.++..++ ..+|+.+++++|+ |.+++.|+..       +||+++.+|+.+ +.+.. |+|++..
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~  195 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG  195 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence            5677899999999999999996 7899999999998 8888877642       569999999998 55544 9999999


Q ss_pred             cccccCCC
Q 024046          264 GNFENYQS  271 (273)
Q Consensus       264 vLHd~~~~  271 (273)
                      ++|++++.
T Consensus       196 ~~~~~~~~  203 (305)
T 3ocj_A          196 LNIYEPDD  203 (305)
T ss_dssp             SGGGCCCH
T ss_pred             hhhhcCCH
Confidence            99998764

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=98.67  E-value=1e-08  Score=85.00  Aligned_cols=74  Identities=11%  Similarity=0.153  Sum_probs=62.1

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----CCCceEEEcccCCCCCC-C-CEEEecccccc
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFESVPE-G-DAILMKVGNFE  267 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~ri~~~~gD~f~~~p~-~-D~~~l~~vLHd  267 (273)
                      ..+..+|||||||+|.++..+++...  +++++|. |.+++.++.    .++++++.+|+.+..+. . |+|++..++|+
T Consensus        49 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~  126 (216)
T 3ofk_A           49 SGAVSNGLEIGCAAGAFTEKLAPHCK--RLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY  126 (216)
T ss_dssp             TSSEEEEEEECCTTSHHHHHHGGGEE--EEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred             cCCCCcEEEEcCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence            45678999999999999999999863  7899998 777877654    36899999999984344 3 99999999999


Q ss_pred             cCC
Q 024046          268 NYQ  270 (273)
Q Consensus       268 ~~~  270 (273)
                      .++
T Consensus       127 ~~~  129 (216)
T 3ofk_A          127 LED  129 (216)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            886

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.66  E-value=3.4e-08  Score=89.67  Aligned_cols=75  Identities=17%  Similarity=0.271  Sum_probs=64.8

Q ss_pred             CCcceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhCCCC--------------CCceEEEcccCC-------C
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY--------------AGVEHVGGNMFE-------S  252 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~~--------------~ri~~~~gD~f~-------~  252 (273)
                      .+..+|||||||+|.++..+++.+ |..+++++|+ |.+++.|++.              ++|+++.+|+.+       +
T Consensus        82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~  161 (383)
T 4fsd_A           82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG  161 (383)
T ss_dssp             GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred             CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence            356899999999999999999997 8899999998 8888877643              689999999987       5


Q ss_pred             CCCC--CEEEecccccccCC
Q 024046          253 VPEG--DAILMKVGNFENYQ  270 (273)
Q Consensus       253 ~p~~--D~~~l~~vLHd~~~  270 (273)
                      +|.+  |+|++..++|.++|
T Consensus       162 ~~~~~fD~V~~~~~l~~~~d  181 (383)
T 4fsd_A          162 VPDSSVDIVISNCVCNLSTN  181 (383)
T ss_dssp             CCTTCEEEEEEESCGGGCSC
T ss_pred             CCCCCEEEEEEccchhcCCC
Confidence            5553  99999999998875

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=98.66  E-value=8.5e-08  Score=78.92  Aligned_cols=80  Identities=14%  Similarity=0.114  Sum_probs=66.1

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCCCC---CC
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP---EG  256 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~p---~~  256 (273)
                      .++..++ ..+..+|||||||+|.++..+++.+|..+++++|. |.+++.|++.      ++++++.+|+.+..+   ..
T Consensus        31 ~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  109 (204)
T 3e05_A           31 VTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDP  109 (204)
T ss_dssp             HHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCC
T ss_pred             HHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCC
Confidence            3455555 66778999999999999999999999999999998 8888877642      789999999987544   24


Q ss_pred             CEEEecccccc
Q 024046          257 DAILMKVGNFE  267 (273)
Q Consensus       257 D~~~l~~vLHd  267 (273)
                      |++++...+++
T Consensus       110 D~i~~~~~~~~  120 (204)
T 3e05_A          110 DRVFIGGSGGM  120 (204)
T ss_dssp             SEEEESCCTTC
T ss_pred             CEEEECCCCcC
Confidence            99999887763

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.66  E-value=4.5e-08  Score=79.74  Aligned_cols=82  Identities=13%  Similarity=0.121  Sum_probs=65.5

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCC-CCCCC-C
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG-D  257 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~~p~~-D  257 (273)
                      .+++.++ ..+..+|||||||+|.++..+++.  ..+++++|. |.+++.++..      ++++++.+|+.+ +.+.. |
T Consensus        23 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D   99 (199)
T 2xvm_A           23 EVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYD   99 (199)
T ss_dssp             HHHHHTT-TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEE
T ss_pred             HHHHHhh-ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCce
Confidence            3445555 445679999999999999999988  568999998 8888877642      479999999987 44444 9


Q ss_pred             EEEecccccccCCC
Q 024046          258 AILMKVGNFENYQS  271 (273)
Q Consensus       258 ~~~l~~vLHd~~~~  271 (273)
                      +|++..++|.++++
T Consensus       100 ~v~~~~~l~~~~~~  113 (199)
T 2xvm_A          100 FILSTVVLMFLEAK  113 (199)
T ss_dssp             EEEEESCGGGSCGG
T ss_pred             EEEEcchhhhCCHH
Confidence            99999999988743

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.66  E-value=1.2e-08  Score=81.46  Aligned_cols=78  Identities=17%  Similarity=0.194  Sum_probs=65.0

Q ss_pred             HHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-CCCceEEEcccCCCCCCC--CEEEecc
Q 024046          188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFESVPEG--DAILMKV  263 (273)
Q Consensus       188 il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-~~ri~~~~gD~f~~~p~~--D~~~l~~  263 (273)
                      +++.++ ..+..+|||||||+|.++..+++++.  +++++|. |.+++.++. .++++++.+|  .+++.+  |+|++..
T Consensus         9 ~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~~~   83 (170)
T 3i9f_A            9 YLPNIF-EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILFAN   83 (170)
T ss_dssp             THHHHH-SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEEES
T ss_pred             HHHhcC-cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEEcc
Confidence            344455 66778999999999999999999985  8999998 888887765 4899999999  556653  9999999


Q ss_pred             cccccCC
Q 024046          264 GNFENYQ  270 (273)
Q Consensus       264 vLHd~~~  270 (273)
                      ++|.+++
T Consensus        84 ~l~~~~~   90 (170)
T 3i9f_A           84 SFHDMDD   90 (170)
T ss_dssp             CSTTCSC
T ss_pred             chhcccC
Confidence            9998865

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=98.65  E-value=3.4e-08  Score=85.63  Aligned_cols=80  Identities=20%  Similarity=0.233  Sum_probs=64.9

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC-C-CCCC
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-S-VPEG  256 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~-~p~~  256 (273)
                      .++..++  .+..+|||||||+|.++..+++.  ..+++++|+ |.+++.|+..       ++++++.+|+.+ + ++.+
T Consensus        60 ~~l~~~~--~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  135 (285)
T 4htf_A           60 RVLAEMG--PQKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLET  135 (285)
T ss_dssp             HHHHHTC--SSCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSS
T ss_pred             HHHHhcC--CCCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCC
Confidence            4455544  24579999999999999999998  668999998 8888877642       689999999987 3 4443


Q ss_pred             --CEEEecccccccCC
Q 024046          257 --DAILMKVGNFENYQ  270 (273)
Q Consensus       257 --D~~~l~~vLHd~~~  270 (273)
                        |+|++..+||.+++
T Consensus       136 ~fD~v~~~~~l~~~~~  151 (285)
T 4htf_A          136 PVDLILFHAVLEWVAD  151 (285)
T ss_dssp             CEEEEEEESCGGGCSC
T ss_pred             CceEEEECchhhcccC
Confidence              99999999999876

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=98.64  E-value=8.9e-08  Score=76.90  Aligned_cols=69  Identities=16%  Similarity=0.290  Sum_probs=59.1

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCCCCceEEEcccCCCCCCC--CEEEecccccccCCC
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVPEG--DAILMKVGNFENYQS  271 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gD~f~~~p~~--D~~~l~~vLHd~~~~  271 (273)
                      +..+|||||||+|.++..++++.   +++++|+ |.+++.   .++++++.+|++++++.+  |++++.-.+|..+++
T Consensus        23 ~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~   94 (170)
T 3q87_B           23 EMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDD   94 (170)
T ss_dssp             CSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCC
T ss_pred             CCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEECCCCccCCcc
Confidence            45699999999999999999998   8999998 777776   578999999999977743  999998888866554

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=98.63  E-value=4e-08  Score=78.64  Aligned_cols=78  Identities=22%  Similarity=0.227  Sum_probs=62.6

Q ss_pred             HHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCCC----
Q 024046          188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE----  255 (273)
Q Consensus       188 il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p~----  255 (273)
                      ++..++ ..+..+|||||||+|.++..+++.+|..+++++|. |.+++.++..       +++ ++.+|..+++|.    
T Consensus        17 ~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~   94 (178)
T 3hm2_A           17 AISALA-PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDN   94 (178)
T ss_dssp             HHHHHC-CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSC
T ss_pred             HHHHhc-ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCC
Confidence            445455 56778999999999999999999999999999998 7778776632       378 888998775553    


Q ss_pred             CCEEEecccccc
Q 024046          256 GDAILMKVGNFE  267 (273)
Q Consensus       256 ~D~~~l~~vLHd  267 (273)
                      .|++++...+|.
T Consensus        95 ~D~i~~~~~~~~  106 (178)
T 3hm2_A           95 PDVIFIGGGLTA  106 (178)
T ss_dssp             CSEEEECC-TTC
T ss_pred             CCEEEECCcccH
Confidence            399999998876

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.62  E-value=6.6e-08  Score=82.73  Aligned_cols=74  Identities=16%  Similarity=0.167  Sum_probs=62.1

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-CCCceEEEcccCC-CCCCC-CEEEecc-cccccC
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFE-SVPEG-DAILMKV-GNFENY  269 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-~~ri~~~~gD~f~-~~p~~-D~~~l~~-vLHd~~  269 (273)
                      .++..+|||||||+|.++..++++.+  +++++|+ |.+++.|+. .++++++.+|+.+ +.+.. |+|++.. +||..+
T Consensus        48 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~  125 (263)
T 3pfg_A           48 SPKAASLLDVACGTGMHLRHLADSFG--TVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLA  125 (263)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHTTTSS--EEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSC
T ss_pred             CCCCCcEEEeCCcCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcC
Confidence            34568999999999999999999965  6899998 888888875 3689999999998 45444 9999997 999875


Q ss_pred             C
Q 024046          270 Q  270 (273)
Q Consensus       270 ~  270 (273)
                      +
T Consensus       126 ~  126 (263)
T 3pfg_A          126 G  126 (263)
T ss_dssp             H
T ss_pred             C
Confidence            3

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=98.62  E-value=5.8e-08  Score=88.46  Aligned_cols=80  Identities=13%  Similarity=0.195  Sum_probs=64.1

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC---------------CCCceEEEccc
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS---------------YAGVEHVGGNM  249 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---------------~~ri~~~~gD~  249 (273)
                      ..+++.+. ..+..+|||||||+|..+..+++.+|.-+++++|+ |.+++.|+.               .++|+++.||+
T Consensus       163 ~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~  241 (438)
T 3uwp_A          163 AQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF  241 (438)
T ss_dssp             HHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCT
T ss_pred             HHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcc
Confidence            34556665 77889999999999999999999998777999998 666655542               26899999999


Q ss_pred             CC-CCC----CCCEEEeccccc
Q 024046          250 FE-SVP----EGDAILMKVGNF  266 (273)
Q Consensus       250 f~-~~p----~~D~~~l~~vLH  266 (273)
                      ++ +++    .+|+|++.+++|
T Consensus       242 ~~lp~~d~~~~aDVVf~Nn~~F  263 (438)
T 3uwp_A          242 LSEEWRERIANTSVIFVNNFAF  263 (438)
T ss_dssp             TSHHHHHHHHTCSEEEECCTTC
T ss_pred             cCCccccccCCccEEEEccccc
Confidence            98 443    459999887765

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=98.60  E-value=7.4e-08  Score=84.87  Aligned_cols=82  Identities=13%  Similarity=0.195  Sum_probs=67.2

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCCCC-
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEG-  256 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p~~-  256 (273)
                      ..+++.++ ..+..+|||||||+|.++..+++++ ..+++++|+ |.+++.++..       ++++++.+|+.+ +|.. 
T Consensus        80 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~f  156 (318)
T 2fk8_A           80 DLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-FAEPV  156 (318)
T ss_dssp             HHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-CCCCC
T ss_pred             HHHHHhcC-CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH-CCCCc
Confidence            45566665 6677899999999999999999997 568999998 8888776542       579999999865 4544 


Q ss_pred             CEEEecccccccCC
Q 024046          257 DAILMKVGNFENYQ  270 (273)
Q Consensus       257 D~~~l~~vLHd~~~  270 (273)
                      |+|++..++|+.++
T Consensus       157 D~v~~~~~l~~~~~  170 (318)
T 2fk8_A          157 DRIVSIEAFEHFGH  170 (318)
T ss_dssp             SEEEEESCGGGTCG
T ss_pred             CEEEEeChHHhcCH
Confidence            99999999998864

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.59  E-value=1.1e-07  Score=79.02  Aligned_cols=81  Identities=15%  Similarity=0.222  Sum_probs=64.1

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCCCCceEEEcccCC---CCCCC--CEE
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE---SVPEG--DAI  259 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gD~f~---~~p~~--D~~  259 (273)
                      +.+++.++  .+..+|||||||+|.++..+++. | .+++++|. |.+++.++..- .+++.+|+..   +++.+  |+|
T Consensus        23 ~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~v   97 (230)
T 3cc8_A           23 PNLLKHIK--KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL-DHVVLGDIETMDMPYEEEQFDCV   97 (230)
T ss_dssp             HHHHTTCC--TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS-SEEEESCTTTCCCCSCTTCEEEE
T ss_pred             HHHHHHhc--cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC-CcEEEcchhhcCCCCCCCccCEE
Confidence            44555554  46689999999999999999998 5 88999998 88888776432 4789999975   34443  999


Q ss_pred             EecccccccCCC
Q 024046          260 LMKVGNFENYQS  271 (273)
Q Consensus       260 ~l~~vLHd~~~~  271 (273)
                      ++.+++|++++.
T Consensus        98 ~~~~~l~~~~~~  109 (230)
T 3cc8_A           98 IFGDVLEHLFDP  109 (230)
T ss_dssp             EEESCGGGSSCH
T ss_pred             EECChhhhcCCH
Confidence            999999988763

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.59  E-value=4.6e-08  Score=82.76  Aligned_cols=75  Identities=16%  Similarity=0.217  Sum_probs=62.5

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC---CCCceEEEcccCC-CCCC-------CCEEEec
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS---YAGVEHVGGNMFE-SVPE-------GDAILMK  262 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~~ri~~~~gD~f~-~~p~-------~D~~~l~  262 (273)
                      ..+..+|||||||+|.++..+++.++  +++++|. |.+++.++.   ..+++++.+|+.+ +.+.       .|+|++.
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~  131 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR  131 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence            45668999999999999999999999  6899998 888887754   2589999999998 2221       4899999


Q ss_pred             ccccccCCC
Q 024046          263 VGNFENYQS  271 (273)
Q Consensus       263 ~vLHd~~~~  271 (273)
                      .++|..+++
T Consensus       132 ~~~~~~~~~  140 (245)
T 3ggd_A          132 TGFHHIPVE  140 (245)
T ss_dssp             SSSTTSCGG
T ss_pred             chhhcCCHH
Confidence            999998754

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.57  E-value=5.2e-08  Score=84.61  Aligned_cols=80  Identities=16%  Similarity=0.138  Sum_probs=63.7

Q ss_pred             HHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcccCC-C---
Q 024046          188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFE-S---  252 (273)
Q Consensus       188 il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------~~ri~~~~gD~f~-~---  252 (273)
                      +...++ ..+..+|||||||+|.++..++++.+  +++++|+ |.+++.|+.          .+++.+..+|+.. +   
T Consensus        49 l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  125 (293)
T 3thr_A           49 LLGLLR-QHGCHRVLDVACGTGVDSIMLVEEGF--SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDV  125 (293)
T ss_dssp             HHHHHH-HTTCCEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHS
T ss_pred             HHHHhc-ccCCCEEEEecCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcccc
Confidence            333333 34668999999999999999999954  8999998 788877743          1678999999987 4   


Q ss_pred             CCCC--CEEEec-ccccccCC
Q 024046          253 VPEG--DAILMK-VGNFENYQ  270 (273)
Q Consensus       253 ~p~~--D~~~l~-~vLHd~~~  270 (273)
                      ++.+  |+|++. +++|++++
T Consensus       126 ~~~~~fD~V~~~g~~l~~~~~  146 (293)
T 3thr_A          126 PAGDGFDAVICLGNSFAHLPD  146 (293)
T ss_dssp             CCTTCEEEEEECTTCGGGSCC
T ss_pred             ccCCCeEEEEEcChHHhhcCc
Confidence            4543  999998 99999887

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=98.57  E-value=2.4e-08  Score=81.71  Aligned_cols=72  Identities=15%  Similarity=0.079  Sum_probs=60.1

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCCC-C-CEEEeccc
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE-G-DAILMKVG  264 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p~-~-D~~~l~~v  264 (273)
                      ++...+|||||||+|-++..+....|+.+.+..|. +.+++.++.+       .++++  .|.....|. . |++++.++
T Consensus        47 l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~  124 (200)
T 3fzg_A           47 IKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKM  124 (200)
T ss_dssp             SCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETC
T ss_pred             cCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhH
Confidence            35688999999999999999999999999999998 8888877653       24555  788765444 3 99999999


Q ss_pred             cccc
Q 024046          265 NFEN  268 (273)
Q Consensus       265 LHd~  268 (273)
                      ||.-
T Consensus       125 LHlL  128 (200)
T 3fzg_A          125 LPVL  128 (200)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            9986

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.57  E-value=4e-08  Score=82.63  Aligned_cols=71  Identities=21%  Similarity=0.159  Sum_probs=59.3

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCCC-C-CEEEeccccccc
Q 024046          199 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE-G-DAILMKVGNFEN  268 (273)
Q Consensus       199 ~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p~-~-D~~~l~~vLHd~  268 (273)
                      .+|||||||+|.++..+++  +..+++++|+ |.+++.++..       ++|+++.+|+.+..|. . |+|++..++|.+
T Consensus        68 ~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~  145 (235)
T 3lcc_A           68 GRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCAI  145 (235)
T ss_dssp             EEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTTS
T ss_pred             CCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhcC
Confidence            5999999999999999976  5778999998 8888776542       4699999999984454 3 999999999998


Q ss_pred             CCC
Q 024046          269 YQS  271 (273)
Q Consensus       269 ~~~  271 (273)
                      +++
T Consensus       146 ~~~  148 (235)
T 3lcc_A          146 EPE  148 (235)
T ss_dssp             CGG
T ss_pred             CHH
Confidence            743

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=98.56  E-value=1.5e-07  Score=81.35  Aligned_cols=75  Identities=20%  Similarity=0.343  Sum_probs=61.3

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCCCCC-C-
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE-G-  256 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~p~-~-  256 (273)
                      ..+++.++  .+..+|||||||+|.++..+++.+|+.+++++|. |.+++.++.+      ++++++.+|++++.+. . 
T Consensus       100 ~~~l~~~~--~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~f  177 (276)
T 2b3t_A          100 EQALARLP--EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQF  177 (276)
T ss_dssp             HHHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCE
T ss_pred             HHHHHhcc--cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCc
Confidence            34444443  4567999999999999999999999999999998 8888877642      5799999999987654 3 


Q ss_pred             CEEEec
Q 024046          257 DAILMK  262 (273)
Q Consensus       257 D~~~l~  262 (273)
                      |+|++.
T Consensus       178 D~Iv~n  183 (276)
T 2b3t_A          178 AMIVSN  183 (276)
T ss_dssp             EEEEEC
T ss_pred             cEEEEC
Confidence            999987

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=98.56  E-value=1.4e-07  Score=78.37  Aligned_cols=68  Identities=19%  Similarity=0.317  Sum_probs=57.4

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCC-C--CCCC--CEEEeccc
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S--VPEG--DAILMKVG  264 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~--~p~~--D~~~l~~v  264 (273)
                      +..+|||||||+|.++..+++.+|+.+++++|. |.+++.|+..      ++|+++.+|+.. +  ++.+  |+|++...
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~  120 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS  120 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence            467899999999999999999999999999998 8888877642      689999999987 3  5543  99987643

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=98.55  E-value=6e-08  Score=81.71  Aligned_cols=69  Identities=14%  Similarity=0.030  Sum_probs=59.0

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCCC---CCEEEeccc
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE---GDAILMKVG  264 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p~---~D~~~l~~v  264 (273)
                      ++..+|+|||||+|.+++.+++..|..+++.+|. |..++.|+.+       ++|++..+|.++++|.   .|++++..+
T Consensus        14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~   93 (225)
T 3kr9_A           14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGM   93 (225)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCC
Confidence            4568999999999999999999999999999998 7888877642       6899999999998773   498887654

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=98.54  E-value=1.6e-07  Score=78.27  Aligned_cols=75  Identities=19%  Similarity=0.183  Sum_probs=62.2

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----------CCceEEEcccCC-CCCCC--CEE
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----------AGVEHVGGNMFE-SVPEG--DAI  259 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----------~ri~~~~gD~f~-~~p~~--D~~  259 (273)
                      +++..+|||||||+|.++..++++  ..+++++|+ |.+++.++..           ++++++.+|+.. +++.+  |+|
T Consensus        28 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v  105 (235)
T 3sm3_A           28 LQEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFA  105 (235)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEE
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEE
Confidence            446789999999999999999998  668999998 7777766531           368999999987 56543  999


Q ss_pred             EecccccccCCC
Q 024046          260 LMKVGNFENYQS  271 (273)
Q Consensus       260 ~l~~vLHd~~~~  271 (273)
                      ++..++|.+++.
T Consensus       106 ~~~~~l~~~~~~  117 (235)
T 3sm3_A          106 VMQAFLTSVPDP  117 (235)
T ss_dssp             EEESCGGGCCCH
T ss_pred             EEcchhhcCCCH
Confidence            999999998763

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.53  E-value=1e-07  Score=78.73  Aligned_cols=74  Identities=12%  Similarity=0.147  Sum_probs=61.6

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCCCCceEEEcccCC-CCCCC-CEEEecccccccCC
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG-DAILMKVGNFENYQ  270 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gD~f~-~~p~~-D~~~l~~vLHd~~~  270 (273)
                      +++..+|||||||+|.++..++++  ..+++++|+ |.+++.++..-+++++.+|+.. +.+.. |+|++..+||++++
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~  117 (211)
T 3e23_A           41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPR  117 (211)
T ss_dssp             SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCH
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCH
Confidence            456789999999999999999998  568999998 8888887765578999999987 42233 99999999999873

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.53  E-value=5.5e-08  Score=82.18  Aligned_cols=74  Identities=12%  Similarity=0.071  Sum_probs=61.6

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCC-CCCCC--CEEEeccccc
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG--DAILMKVGNF  266 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~~p~~--D~~~l~~vLH  266 (273)
                      +..+|||||||+|.++..+++++ ..+++++|+ |.+++.++..      .+++++.+|+.. +.+.+  |+|++.++||
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  157 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG  157 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence            47899999999999999999987 568999998 8888877642      358999999876 45543  9999999999


Q ss_pred             ccCCC
Q 024046          267 ENYQS  271 (273)
Q Consensus       267 d~~~~  271 (273)
                      +++++
T Consensus       158 ~~~~~  162 (241)
T 2ex4_A          158 HLTDQ  162 (241)
T ss_dssp             GSCHH
T ss_pred             hCCHH
Confidence            98763

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=98.53  E-value=8.3e-08  Score=78.94  Aligned_cols=66  Identities=23%  Similarity=0.249  Sum_probs=55.2

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCCCCC-C-CEEEecc
Q 024046          198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE-G-DAILMKV  263 (273)
Q Consensus       198 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~p~-~-D~~~l~~  263 (273)
                      ..+|||||||+|.++..+++.+|..+++++|. |.+++.++..      ++++++.+|+.+..|. . |++++..
T Consensus        66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~  140 (207)
T 1jsx_A           66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRA  140 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSC
T ss_pred             CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEec
Confidence            57999999999999999999999999999998 8887776542      4599999999985443 3 9998643

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=98.52  E-value=7.6e-08  Score=81.32  Aligned_cols=69  Identities=17%  Similarity=0.025  Sum_probs=58.9

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCCC---CCEEEeccc
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE---GDAILMKVG  264 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p~---~D~~~l~~v  264 (273)
                      ++..+|+|||||+|.+++.+++..|..+++.+|+ |..++.|+.+       +||++..||.++.++.   .|++++..+
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm   99 (230)
T 3lec_A           20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM   99 (230)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence            4568999999999999999999999999999998 8888877642       6899999999996553   399887665

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=98.52  E-value=2.1e-07  Score=77.06  Aligned_cols=82  Identities=13%  Similarity=0.137  Sum_probs=66.6

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCCCC-C-C
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP-E-G  256 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~p-~-~  256 (273)
                      .++..+. ..+..+|||||||+|.++..+++.. |+.+++++|. |..++.++..      ++++++.+|+..+.+ . .
T Consensus        68 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~  146 (215)
T 2yxe_A           68 MMCELLD-LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAP  146 (215)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCC
T ss_pred             HHHHhhC-CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCC
Confidence            3445444 5667899999999999999999998 7789999998 8888777642      579999999977665 3 3


Q ss_pred             -CEEEecccccccC
Q 024046          257 -DAILMKVGNFENY  269 (273)
Q Consensus       257 -D~~~l~~vLHd~~  269 (273)
                       |+|++..++|+.+
T Consensus       147 fD~v~~~~~~~~~~  160 (215)
T 2yxe_A          147 YDRIYTTAAGPKIP  160 (215)
T ss_dssp             EEEEEESSBBSSCC
T ss_pred             eeEEEECCchHHHH
Confidence             9999999998765

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=98.52  E-value=2.4e-07  Score=76.38  Aligned_cols=81  Identities=17%  Similarity=0.223  Sum_probs=65.5

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCCCC-C-C-
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP-E-G-  256 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~p-~-~-  256 (273)
                      .++..++ ..+..+|||||||+|.++..+++.  ..+++++|. |.+++.++..      ++++++.+|.++..+ . . 
T Consensus        68 ~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  144 (210)
T 3lbf_A           68 RMTELLE-LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPF  144 (210)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred             HHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCc
Confidence            3445555 667789999999999999999999  578999998 8888777642      579999999998544 2 3 


Q ss_pred             CEEEecccccccCC
Q 024046          257 DAILMKVGNFENYQ  270 (273)
Q Consensus       257 D~~~l~~vLHd~~~  270 (273)
                      |+|++..++|..++
T Consensus       145 D~i~~~~~~~~~~~  158 (210)
T 3lbf_A          145 DAIIVTAAPPEIPT  158 (210)
T ss_dssp             EEEEESSBCSSCCT
T ss_pred             cEEEEccchhhhhH
Confidence            99999999988764

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.51  E-value=3.4e-07  Score=76.00  Aligned_cols=70  Identities=17%  Similarity=0.175  Sum_probs=54.6

Q ss_pred             hhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHh----CCC------CCCceEEEcccCC-CCCCC-
Q 024046          190 EHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQD----APS------YAGVEHVGGNMFE-SVPEG-  256 (273)
Q Consensus       190 ~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~----a~~------~~ri~~~~gD~f~-~~p~~-  256 (273)
                      ..++ ..+..+|||||||+|.++..+++.+|..+++++|+ |.+++.    ++.      .++++++.+|+.+ +++.+ 
T Consensus        21 ~~l~-~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~   99 (218)
T 3mq2_A           21 EQLR-SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV   99 (218)
T ss_dssp             HHHH-TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE
T ss_pred             HHhh-ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC
Confidence            3344 56678999999999999999999999999999998 664442    332      2589999999998 55543 


Q ss_pred             CEEE
Q 024046          257 DAIL  260 (273)
Q Consensus       257 D~~~  260 (273)
                      |.++
T Consensus       100 d~v~  103 (218)
T 3mq2_A          100 GELH  103 (218)
T ss_dssp             EEEE
T ss_pred             CEEE
Confidence            6665

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.51  E-value=1.3e-07  Score=79.67  Aligned_cols=84  Identities=19%  Similarity=0.276  Sum_probs=68.0

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCCCCC-C
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE-G  256 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~p~-~  256 (273)
                      ...+++.++ ..+..+|||||||+|.++..+++..| .+++++|. |.+++.|+..      ++++++.+|+..++|. +
T Consensus        80 ~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~  157 (235)
T 1jg1_A           80 VAIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA  157 (235)
T ss_dssp             HHHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred             HHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCC
Confidence            345556555 66778999999999999999999998 88999997 8888777642      5699999999666663 3


Q ss_pred             --CEEEecccccccCC
Q 024046          257 --DAILMKVGNFENYQ  270 (273)
Q Consensus       257 --D~~~l~~vLHd~~~  270 (273)
                        |+|++..++|.+.+
T Consensus       158 ~fD~Ii~~~~~~~~~~  173 (235)
T 1jg1_A          158 PYDVIIVTAGAPKIPE  173 (235)
T ss_dssp             CEEEEEECSBBSSCCH
T ss_pred             CccEEEECCcHHHHHH
Confidence              99999999987653

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=98.50  E-value=9.2e-08  Score=81.47  Aligned_cols=69  Identities=16%  Similarity=0.162  Sum_probs=58.6

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCCC---CCEEEeccc
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE---GDAILMKVG  264 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p~---~D~~~l~~v  264 (273)
                      ++..+|+|||||+|.+++.+++..|..+++.+|+ |..++.|+.+       +||++..+|.++.++.   .|++++.++
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm   99 (244)
T 3gnl_A           20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM   99 (244)
T ss_dssp             CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC
Confidence            4568999999999999999999999999999998 8888877652       6899999999996552   499887654

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=98.49  E-value=2.2e-07  Score=84.18  Aligned_cols=80  Identities=25%  Similarity=0.241  Sum_probs=64.9

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC---------CCceEEEcccCCCCCCC
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------AGVEHVGGNMFESVPEG  256 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~---------~ri~~~~gD~f~~~p~~  256 (273)
                      .+++.++ .....+|||||||+|.++..+++++|..+++++|. |.+++.++.+         .+++++.+|++++++.+
T Consensus       213 ~ll~~l~-~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~  291 (375)
T 4dcm_A          213 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF  291 (375)
T ss_dssp             HHHHTCC-CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTT
T ss_pred             HHHHhCc-ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCC
Confidence            4566665 44458999999999999999999999999999998 8888877642         25888999999987753


Q ss_pred             --CEEEecccccc
Q 024046          257 --DAILMKVGNFE  267 (273)
Q Consensus       257 --D~~~l~~vLHd  267 (273)
                        |+|++.-.+|.
T Consensus       292 ~fD~Ii~nppfh~  304 (375)
T 4dcm_A          292 RFNAVLCNPPFHQ  304 (375)
T ss_dssp             CEEEEEECCCC--
T ss_pred             CeeEEEECCCccc
Confidence              99999877774

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.49  E-value=1.6e-07  Score=81.35  Aligned_cols=82  Identities=11%  Similarity=0.106  Sum_probs=65.4

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCC-CCCCC-CE
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-DA  258 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~-~~p~~-D~  258 (273)
                      .+++.++ .....+|||||||+|.++..++++  ..+++++|. |.+++.++..     -+++++.+|+.+ +.+.. |+
T Consensus       111 ~~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~  187 (286)
T 3m70_A          111 DVVDAAK-IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDF  187 (286)
T ss_dssp             HHHHHHH-HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEE
T ss_pred             HHHHHhh-ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCccE
Confidence            4445454 346789999999999999999998  568999998 8788776642     289999999998 34444 99


Q ss_pred             EEecccccccCCC
Q 024046          259 ILMKVGNFENYQS  271 (273)
Q Consensus       259 ~~l~~vLHd~~~~  271 (273)
                      |++..++|..+++
T Consensus       188 i~~~~~~~~~~~~  200 (286)
T 3m70_A          188 IVSTVVFMFLNRE  200 (286)
T ss_dssp             EEECSSGGGSCGG
T ss_pred             EEEccchhhCCHH
Confidence            9999999988764

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.49  E-value=4.5e-07  Score=73.17  Aligned_cols=80  Identities=18%  Similarity=0.199  Sum_probs=64.6

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-CCceEEEcccCC-CCCC-C-CEEEe
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPE-G-DAILM  261 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-~ri~~~~gD~f~-~~p~-~-D~~~l  261 (273)
                      .++..+  .++..+|||||||+|.++..+++.  ..+++++|. |.+++.++.. ++++++.+|+.+ ++|. . |++++
T Consensus        38 ~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~  113 (195)
T 3cgg_A           38 RLIDAM--APRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVS  113 (195)
T ss_dssp             HHHHHH--SCTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEE
T ss_pred             HHHHHh--ccCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEE
Confidence            455554  356789999999999999999998  568999998 8888877653 679999999998 5664 3 99999


Q ss_pred             c-ccccccCC
Q 024046          262 K-VGNFENYQ  270 (273)
Q Consensus       262 ~-~vLHd~~~  270 (273)
                      . .++|..++
T Consensus       114 ~~~~~~~~~~  123 (195)
T 3cgg_A          114 AGNVMGFLAE  123 (195)
T ss_dssp             CCCCGGGSCH
T ss_pred             CCcHHhhcCh
Confidence            8 88887653

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=98.49  E-value=1.5e-07  Score=75.42  Aligned_cols=75  Identities=12%  Similarity=0.104  Sum_probs=61.2

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCCCCC--CC
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE--GD  257 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~p~--~D  257 (273)
                      .++..++ ..+..+|||||||+|.++..+++  |..+++++|. |.+++.++..      ++++++.+|+.+++|.  .|
T Consensus        26 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D  102 (183)
T 2yxd_A           26 VSIGKLN-LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFN  102 (183)
T ss_dssp             HHHHHHC-CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCS
T ss_pred             HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCc
Confidence            3444444 55678999999999999999999  8889999998 8888777643      6899999999986664  39


Q ss_pred             EEEeccc
Q 024046          258 AILMKVG  264 (273)
Q Consensus       258 ~~~l~~v  264 (273)
                      ++++..+
T Consensus       103 ~i~~~~~  109 (183)
T 2yxd_A          103 KAFIGGT  109 (183)
T ss_dssp             EEEECSC
T ss_pred             EEEECCc
Confidence            9998876

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.47  E-value=1.2e-07  Score=82.31  Aligned_cols=75  Identities=19%  Similarity=0.119  Sum_probs=60.7

Q ss_pred             CcceEEEecCCccH----HHHHHHHHCC----CCeEEEeec-hHHHHhCCCC----------------------------
Q 024046          197 NVERLVDVGGGFGV----TLSMITSKYP----QIKAVNFDL-PHVVQDAPSY----------------------------  239 (273)
Q Consensus       197 ~~~~vvDVGGG~G~----~~~~l~~~~P----~l~~~~~Dl-p~v~~~a~~~----------------------------  239 (273)
                      +..+|+|+|||+|.    +++.|++.+|    +.++++.|+ +.+++.|+..                            
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            35789999999998    6777888766    468999998 8888877531                            


Q ss_pred             ---------CCceEEEcccCC-CCC--CC-CEEEecccccccCCC
Q 024046          240 ---------AGVEHVGGNMFE-SVP--EG-DAILMKVGNFENYQS  271 (273)
Q Consensus       240 ---------~ri~~~~gD~f~-~~p--~~-D~~~l~~vLHd~~~~  271 (273)
                               ++|+|..+|+.+ ++|  .. |+|++++||+.++++
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~  229 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKT  229 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHH
T ss_pred             ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHH
Confidence                     269999999998 466  23 999999999988754

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.47  E-value=2.1e-07  Score=76.45  Aligned_cols=74  Identities=11%  Similarity=0.105  Sum_probs=59.4

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCC-CCCCC--CEEEecccc
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG--DAILMKVGN  265 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~-~~p~~--D~~~l~~vL  265 (273)
                      ..+..+|||||||+|.++..++.. +..+++++|. |.+++.++..     .+++++.+|+.+ ++|.+  |+|++..++
T Consensus        21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l   99 (209)
T 2p8j_A           21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI   99 (209)
T ss_dssp             SSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence            445689999999999985555544 5679999998 8888877642     679999999987 56643  999999999


Q ss_pred             cccC
Q 024046          266 FENY  269 (273)
Q Consensus       266 Hd~~  269 (273)
                      |+++
T Consensus       100 ~~~~  103 (209)
T 2p8j_A          100 FHMR  103 (209)
T ss_dssp             GGSC
T ss_pred             HhCC
Confidence            9885

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.47  E-value=1.4e-07  Score=92.25  Aligned_cols=83  Identities=18%  Similarity=0.150  Sum_probs=67.2

Q ss_pred             HHhhcccCCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhCCC------------CCCceEEEcccCC-C
Q 024046          188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS------------YAGVEHVGGNMFE-S  252 (273)
Q Consensus       188 il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~------------~~ri~~~~gD~f~-~  252 (273)
                      +++.+. ..+..+|||||||+|.++..+++.. |..+++++|+ |.+++.|++            .++|+++.+|+.. +
T Consensus       713 LLelL~-~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp  791 (950)
T 3htx_A          713 ALKHIR-ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFD  791 (950)
T ss_dssp             HHHHHH-HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCC
T ss_pred             HHHHhc-ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCC
Confidence            344443 3467899999999999999999999 5678999998 888887754            2679999999988 5


Q ss_pred             CCC-C-CEEEecccccccCCC
Q 024046          253 VPE-G-DAILMKVGNFENYQS  271 (273)
Q Consensus       253 ~p~-~-D~~~l~~vLHd~~~~  271 (273)
                      .+. . |+|++..++|+++++
T Consensus       792 ~~d~sFDlVV~~eVLeHL~dp  812 (950)
T 3htx_A          792 SRLHDVDIGTCLEVIEHMEED  812 (950)
T ss_dssp             TTSCSCCEEEEESCGGGSCHH
T ss_pred             cccCCeeEEEEeCchhhCChH
Confidence            553 3 999999999998764

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.47  E-value=2e-07  Score=78.08  Aligned_cols=73  Identities=18%  Similarity=0.227  Sum_probs=60.7

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-CCceEEEcccCC-CCCCC-CEEE-ecccccccCC
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG-DAIL-MKVGNFENYQ  270 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-~ri~~~~gD~f~-~~p~~-D~~~-l~~vLHd~~~  270 (273)
                      .+..+|||||||+|.++..++++++  +++++|+ |.+++.++.. ++++++.+|+.+ +.+.. |+|+ ...++|..++
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~  116 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT  116 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence            4668999999999999999999988  7899998 8888887754 789999999987 44444 9999 4558887754

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=98.47  E-value=2.6e-07  Score=78.55  Aligned_cols=75  Identities=16%  Similarity=0.240  Sum_probs=63.1

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCCCC
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEG  256 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p~~  256 (273)
                      ..++..++ ..+..+|||+|||+|.++..+++. .|..+++++|+ |..++.|++.       +|++++.+|+.++++.+
T Consensus        83 ~~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  161 (255)
T 3mb5_A           83 ALIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEE  161 (255)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCC
T ss_pred             HHHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCC
Confidence            34555555 667889999999999999999999 89999999998 8888877642       56999999999887754


Q ss_pred             --CEEEe
Q 024046          257 --DAILM  261 (273)
Q Consensus       257 --D~~~l  261 (273)
                        |++++
T Consensus       162 ~~D~v~~  168 (255)
T 3mb5_A          162 NVDHVIL  168 (255)
T ss_dssp             SEEEEEE
T ss_pred             CcCEEEE
Confidence              99887

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.46  E-value=2e-07  Score=81.45  Aligned_cols=81  Identities=10%  Similarity=0.071  Sum_probs=62.2

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC---------CCceEEEcccCC-CC
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------AGVEHVGGNMFE-SV  253 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~---------~ri~~~~gD~f~-~~  253 (273)
                      ...+++.++ . ...+|||||||+|.++..++++  ..+++++|+ |.+++.|++.         ++|+++.+|+.+ +.
T Consensus        72 ~~~~~~~~~-~-~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~  147 (299)
T 3g2m_A           72 AREFATRTG-P-VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL  147 (299)
T ss_dssp             HHHHHHHHC-C-CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC
T ss_pred             HHHHHHhhC-C-CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc
Confidence            455666654 3 3459999999999999999998  467999998 8888877642         579999999998 45


Q ss_pred             CCC-CEEEec-ccccccC
Q 024046          254 PEG-DAILMK-VGNFENY  269 (273)
Q Consensus       254 p~~-D~~~l~-~vLHd~~  269 (273)
                      +.. |+|++. .++|..+
T Consensus       148 ~~~fD~v~~~~~~~~~~~  165 (299)
T 3g2m_A          148 DKRFGTVVISSGSINELD  165 (299)
T ss_dssp             SCCEEEEEECHHHHTTSC
T ss_pred             CCCcCEEEECCcccccCC
Confidence            544 988865 6666554

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.46  E-value=4.1e-07  Score=76.43  Aligned_cols=72  Identities=22%  Similarity=0.272  Sum_probs=59.2

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCC-CCCCC-CEEEecc-cc
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-DAILMKV-GN  265 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~-~~p~~-D~~~l~~-vL  265 (273)
                      ++...+|||||||+|.++..+++.   .+++++|. |.+++.|+..     .+++++.+|+.+ +.+.. |+|++.. ++
T Consensus        31 ~~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~  107 (243)
T 3d2l_A           31 VEPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSL  107 (243)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGG
T ss_pred             cCCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCch
Confidence            344589999999999999999988   68999998 8888877642     579999999987 45544 9999886 88


Q ss_pred             cccC
Q 024046          266 FENY  269 (273)
Q Consensus       266 Hd~~  269 (273)
                      |+..
T Consensus       108 ~~~~  111 (243)
T 3d2l_A          108 NYLQ  111 (243)
T ss_dssp             GGCC
T ss_pred             hhcC
Confidence            8764

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=98.45  E-value=5.8e-08  Score=79.87  Aligned_cols=76  Identities=22%  Similarity=0.279  Sum_probs=51.0

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCCCCCC-----
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPE-----  255 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~~~p~-----  255 (273)
                      .+++.+....+..+|||||||+|.++..+++.+|+.+++++|+ |.+++.++..     .+++++.+|++++++.     
T Consensus        20 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~   99 (215)
T 4dzr_A           20 EAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERG   99 (215)
T ss_dssp             HHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHTT
T ss_pred             HHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhcc
Confidence            3444444235678999999999999999999999999999999 8888888754     1789999999885542     


Q ss_pred             C--CEEEec
Q 024046          256 G--DAILMK  262 (273)
Q Consensus       256 ~--D~~~l~  262 (273)
                      +  |+|++.
T Consensus       100 ~~fD~i~~n  108 (215)
T 4dzr_A          100 RPWHAIVSN  108 (215)
T ss_dssp             CCBSEEEEC
T ss_pred             CcccEEEEC
Confidence            3  999984

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.45  E-value=8.4e-07  Score=75.12  Aligned_cols=80  Identities=20%  Similarity=0.299  Sum_probs=60.5

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCC-CCCCC-CE
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-DA  258 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~-~~p~~-D~  258 (273)
                      .++.... ..+..+|||||||+|.++..++++  ..+++++|+ |.+++.|+..     .+++++.+|+.+ +.+.. |+
T Consensus        32 ~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~  108 (252)
T 1wzn_A           32 EIFKEDA-KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDA  108 (252)
T ss_dssp             HHHHHTC-SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEE
T ss_pred             HHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccE
Confidence            3444443 345689999999999999999987  568999998 8888877642     479999999987 45544 99


Q ss_pred             EEec-ccccccC
Q 024046          259 ILMK-VGNFENY  269 (273)
Q Consensus       259 ~~l~-~vLHd~~  269 (273)
                      |++. ..+|.++
T Consensus       109 v~~~~~~~~~~~  120 (252)
T 1wzn_A          109 VTMFFSTIMYFD  120 (252)
T ss_dssp             EEECSSGGGGSC
T ss_pred             EEEcCCchhcCC
Confidence            9876 4455443

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.45  E-value=1.8e-07  Score=77.49  Aligned_cols=80  Identities=25%  Similarity=0.244  Sum_probs=63.8

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCCCCceEEEcccCC----CCC-CC--CE
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE----SVP-EG--DA  258 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gD~f~----~~p-~~--D~  258 (273)
                      .++..+. .....+|||||||+|.++..+++.  ..+++++|+ |.+++.++...+++++.+|+..    +.+ ..  |+
T Consensus        43 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~  119 (227)
T 3e8s_A           43 AILLAIL-GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDL  119 (227)
T ss_dssp             HHHHHHH-HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEE
T ss_pred             HHHHHhh-cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccE
Confidence            4455554 345589999999999999999998  568999998 8889888877889999999875    222 22  99


Q ss_pred             EEecccccccCC
Q 024046          259 ILMKVGNFENYQ  270 (273)
Q Consensus       259 ~~l~~vLHd~~~  270 (273)
                      |++..++| +.+
T Consensus       120 v~~~~~l~-~~~  130 (227)
T 3e8s_A          120 ICANFALL-HQD  130 (227)
T ss_dssp             EEEESCCC-SSC
T ss_pred             EEECchhh-hhh
Confidence            99999999 543

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=98.44  E-value=1.7e-07  Score=81.11  Aligned_cols=74  Identities=15%  Similarity=0.192  Sum_probs=58.7

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhCCC----C---CCceEEEcccCCCCCCC-
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPS----Y---AGVEHVGGNMFESVPEG-  256 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~~~Dl-p~v~~~a~~----~---~ri~~~~gD~f~~~p~~-  256 (273)
                      .++..++ +.+..+|||+|||+|.++..+++. +|..+++++|+ |.+++.|+.    .   ++++++.+|+.++++.+ 
T Consensus       101 ~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~  179 (275)
T 1yb2_A          101 YIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM  179 (275)
T ss_dssp             -----CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred             HHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCC
Confidence            4455555 667789999999999999999998 89999999998 887776653    2   57999999999877753 


Q ss_pred             -CEEEe
Q 024046          257 -DAILM  261 (273)
Q Consensus       257 -D~~~l  261 (273)
                       |+|++
T Consensus       180 fD~Vi~  185 (275)
T 1yb2_A          180 YDAVIA  185 (275)
T ss_dssp             EEEEEE
T ss_pred             ccEEEE
Confidence             99987

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=98.44  E-value=2.1e-07  Score=77.46  Aligned_cols=66  Identities=18%  Similarity=0.291  Sum_probs=55.0

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC------CCCceEEEcccCC-C--CCCC--CEEEec
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE-S--VPEG--DAILMK  262 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gD~f~-~--~p~~--D~~~l~  262 (273)
                      ...+|||||||+|.++..+++.+|+.+++++|. +.+++.|+.      .++|+++.+|+.. +  ++.+  |.+++.
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~  115 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLN  115 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEE
Confidence            457899999999999999999999999999998 777777654      2679999999987 3  5543  887754

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.43  E-value=1.7e-07  Score=80.33  Aligned_cols=74  Identities=9%  Similarity=0.048  Sum_probs=60.0

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-----------------------CCCceEEEcccCC
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----------------------YAGVEHVGGNMFE  251 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----------------------~~ri~~~~gD~f~  251 (273)
                      ....+|||||||+|..+..|++.  ..+++++|+ |.+++.|++                       .++|+++.+|+++
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~  144 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD  144 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence            45689999999999999999988  568999998 888876632                       2579999999998


Q ss_pred             -CCC--CC-CEEEecccccccCCC
Q 024046          252 -SVP--EG-DAILMKVGNFENYQS  271 (273)
Q Consensus       252 -~~p--~~-D~~~l~~vLHd~~~~  271 (273)
                       +.+  .. |+|+.+.+||..+++
T Consensus       145 l~~~~~~~FD~V~~~~~l~~l~~~  168 (252)
T 2gb4_A          145 LPRANIGKFDRIWDRGALVAINPG  168 (252)
T ss_dssp             GGGGCCCCEEEEEESSSTTTSCGG
T ss_pred             CCcccCCCEEEEEEhhhhhhCCHH
Confidence             443  33 999999899877654

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=98.42  E-value=2.3e-07  Score=77.66  Aligned_cols=66  Identities=12%  Similarity=0.281  Sum_probs=54.8

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC------CCCceEEEcccCCC----CCCC--CEEEec
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFES----VPEG--DAILMK  262 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gD~f~~----~p~~--D~~~l~  262 (273)
                      ...+|||||||+|.++..+++++|+.+++++|. +..++.|+.      .++|+++.+|..+.    +|.+  |.+++.
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~  112 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF  112 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence            567999999999999999999999999999998 777776643      26799999998762    5654  888765

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.42  E-value=1.4e-07  Score=81.26  Aligned_cols=83  Identities=10%  Similarity=0.002  Sum_probs=60.2

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCCCCceEEEcccCC-CC------CC-C
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SV------PE-G  256 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gD~f~-~~------p~-~  256 (273)
                      ..+++.++ ..+..+|||||||+|.++..++++.  .+++++|+ |.+++.|++.-+-.++.+|+.. +.      +. .
T Consensus        35 ~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~g--~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~f  111 (261)
T 3iv6_A           35 ENDIFLEN-IVPGSTVAVIGASTRFLIEKALERG--ASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHF  111 (261)
T ss_dssp             HHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCC
T ss_pred             HHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCc
Confidence            45566665 6677899999999999999999974  57999998 8888887653111134455543 22      22 3


Q ss_pred             CEEEecccccccCCC
Q 024046          257 DAILMKVGNFENYQS  271 (273)
Q Consensus       257 D~~~l~~vLHd~~~~  271 (273)
                      |+|++..++|+++++
T Consensus       112 D~Vv~~~~l~~~~~~  126 (261)
T 3iv6_A          112 DFVLNDRLINRFTTE  126 (261)
T ss_dssp             SEEEEESCGGGSCHH
T ss_pred             cEEEEhhhhHhCCHH
Confidence            999999999988654

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=98.42  E-value=5.1e-07  Score=72.77  Aligned_cols=79  Identities=15%  Similarity=0.275  Sum_probs=63.0

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------C--CceEEEcccCCCCCC-
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A--GVEHVGGNMFESVPE-  255 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~--ri~~~~gD~f~~~p~-  255 (273)
                      ..+++.+. ..+..+|||||||+|.++..+++.  ..+++++|+ |.+++.++..      +  |++++.+|+.++.+. 
T Consensus        42 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~  118 (194)
T 1dus_A           42 KILVENVV-VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR  118 (194)
T ss_dssp             HHHHHHCC-CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred             HHHHHHcc-cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccC
Confidence            34555555 557789999999999999999998  678999998 8887776542      3  599999999986664 


Q ss_pred             C-CEEEecccccc
Q 024046          256 G-DAILMKVGNFE  267 (273)
Q Consensus       256 ~-D~~~l~~vLHd  267 (273)
                      . |+|++...+|.
T Consensus       119 ~~D~v~~~~~~~~  131 (194)
T 1dus_A          119 KYNKIITNPPIRA  131 (194)
T ss_dssp             CEEEEEECCCSTT
T ss_pred             CceEEEECCCccc
Confidence            3 99999887764

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=98.41  E-value=2.7e-07  Score=82.53  Aligned_cols=81  Identities=21%  Similarity=0.287  Sum_probs=64.9

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCCCCCCC-CE
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPEG-DA  258 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~~~p~~-D~  258 (273)
                      ..+++.++ .....+|||||||+|.++..+++++|+.+++++|. |.+++.++..     ..++++.+|++...+.. |+
T Consensus       186 ~~ll~~l~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~  264 (343)
T 2pjd_A          186 QLLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFDM  264 (343)
T ss_dssp             HHHHHHSC-TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEEE
T ss_pred             HHHHHhcC-cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCeeE
Confidence            34556654 34457899999999999999999999999999998 7778777642     34788999998754444 99


Q ss_pred             EEecccccc
Q 024046          259 ILMKVGNFE  267 (273)
Q Consensus       259 ~~l~~vLHd  267 (273)
                      |++...+|.
T Consensus       265 Iv~~~~~~~  273 (343)
T 2pjd_A          265 IISNPPFHD  273 (343)
T ss_dssp             EEECCCCCS
T ss_pred             EEECCCccc
Confidence            999998885

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.41  E-value=4.9e-07  Score=75.89  Aligned_cols=72  Identities=13%  Similarity=0.133  Sum_probs=60.2

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCC-CCCCC-CEEEecc-cccc
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-DAILMKV-GNFE  267 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~-~~p~~-D~~~l~~-vLHd  267 (273)
                      +..+|||||||+|.++..++++.  .+++++|. |.+++.++..     .+++++.+|+.+ +.+.. |+|++.. +||+
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~~--~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~  114 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY  114 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred             CCCeEEEeCCCCCHHHHHHHHCC--CcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence            56899999999999999999984  57999998 8888877653     279999999987 55544 9999998 9998


Q ss_pred             cCC
Q 024046          268 NYQ  270 (273)
Q Consensus       268 ~~~  270 (273)
                      +++
T Consensus       115 ~~~  117 (246)
T 1y8c_A          115 IID  117 (246)
T ss_dssp             CCS
T ss_pred             cCC
Confidence            843

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=98.41  E-value=3.5e-07  Score=85.50  Aligned_cols=85  Identities=20%  Similarity=0.230  Sum_probs=66.9

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCC-------CCceEEEcccCC-CCCCC
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPEG  256 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~-------~ri~~~~gD~f~-~~p~~  256 (273)
                      .+.+++.+. ..+..+|||||||+|.+++.+++ .|..+++++|+..+++.|++.       ++|+++.+|+.+ ++|+.
T Consensus       147 ~~~il~~l~-~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~  224 (480)
T 3b3j_A          147 QRAILQNHT-DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ  224 (480)
T ss_dssp             HHHHHHTGG-GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred             HHHHHHhhh-hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCC
Confidence            345666655 44668999999999999998887 688899999996677666531       789999999998 66665


Q ss_pred             -CEEEecccccccCCC
Q 024046          257 -DAILMKVGNFENYQS  271 (273)
Q Consensus       257 -D~~~l~~vLHd~~~~  271 (273)
                       |+|++..++|.+.++
T Consensus       225 fD~Ivs~~~~~~~~~e  240 (480)
T 3b3j_A          225 VDIIISEPMGYMLFNE  240 (480)
T ss_dssp             EEEEECCCCHHHHTCH
T ss_pred             eEEEEEeCchHhcCcH
Confidence             999998777776543

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.41  E-value=7.9e-07  Score=72.64  Aligned_cols=62  Identities=15%  Similarity=0.174  Sum_probs=49.4

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCC--CCeEEEeechHHHHhCCCCCCceEEEcccCCC
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP--QIKAVNFDLPHVVQDAPSYAGVEHVGGNMFES  252 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P--~l~~~~~Dlp~v~~~a~~~~ri~~~~gD~f~~  252 (273)
                      .+.+.+..+.+..+|||||||+|.++..+++++|  ..+++++|+...    ...++++++.+|+.+.
T Consensus        12 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~----~~~~~v~~~~~d~~~~   75 (201)
T 2plw_A           12 ELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM----DPIPNVYFIQGEIGKD   75 (201)
T ss_dssp             HHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC----CCCTTCEEEECCTTTT
T ss_pred             HHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc----CCCCCceEEEccccch
Confidence            4455554345678999999999999999999998  689999998542    1246899999999873

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.40  E-value=4.9e-07  Score=75.19  Aligned_cols=66  Identities=20%  Similarity=0.140  Sum_probs=56.4

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCCCCceEEEcccCC-CCCCC--CEEEecccccccCC
Q 024046          198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILMKVGNFENYQ  270 (273)
Q Consensus       198 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gD~f~-~~p~~--D~~~l~~vLHd~~~  270 (273)
                      ..+|||||||+|.++..++++      +++|. |.+++.++.. +++++.+|+.. +++.+  |+|++.++||..++
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~  117 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDD  117 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSC
T ss_pred             CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhccC
Confidence            689999999999999998776      89998 8888877755 89999999977 55543  99999999998865

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.40  E-value=3.2e-07  Score=75.44  Aligned_cols=72  Identities=14%  Similarity=0.069  Sum_probs=60.0

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC----CCceEEEcccCC-CCCCC--CEEEecccccc
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPEG--DAILMKVGNFE  267 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~----~ri~~~~gD~f~-~~p~~--D~~~l~~vLHd  267 (273)
                      .+..+|||||||+|.++..+++..+. +++++|. |.+++.++..    ++++++.+|+.+ +++.+  |+|++..++|.
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~  119 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA  119 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence            56689999999999999999999776 8999998 7777776542    689999999988 66643  99999888865


Q ss_pred             c
Q 024046          268 N  268 (273)
Q Consensus       268 ~  268 (273)
                      .
T Consensus       120 ~  120 (215)
T 2pxx_A          120 L  120 (215)
T ss_dssp             H
T ss_pred             h
Confidence            4

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=98.40  E-value=3e-07  Score=80.15  Aligned_cols=65  Identities=17%  Similarity=0.198  Sum_probs=56.0

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCC-CC---CEEEec
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVP-EG---DAILMK  262 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p-~~---D~~~l~  262 (273)
                      ...+|||||||+|.++..+++. |+.+++++|+ |.+++.|+.+       +||+++.+|++++.+ ..   |+|+..
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~Ivsn  199 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSN  199 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEEC
T ss_pred             CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEc
Confidence            4569999999999999999999 9999999998 8888877642       479999999998654 35   999885

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.39  E-value=8.3e-07  Score=73.39  Aligned_cols=68  Identities=18%  Similarity=0.145  Sum_probs=52.7

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCCCCceEEEcccCC-CCCCC--CEEEec
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILMK  262 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~~ri~~~~gD~f~-~~p~~--D~~~l~  262 (273)
                      ..++..+....+..+|||||||+|.++..+.     .+++++|....        +++++.+|+.+ +++.+  |+|++.
T Consensus        56 ~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~~~  122 (215)
T 2zfu_A           56 DRIARDLRQRPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAVFC  122 (215)
T ss_dssp             HHHHHHHHTSCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS--------STTEEESCTTSCSCCTTCEEEEEEE
T ss_pred             HHHHHHHhccCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC--------CceEEEeccccCCCCCCCEeEEEEe
Confidence            3455554434566899999999999998883     57899998432        68999999988 56643  999999


Q ss_pred             cccc
Q 024046          263 VGNF  266 (273)
Q Consensus       263 ~vLH  266 (273)
                      .+||
T Consensus       123 ~~l~  126 (215)
T 2zfu_A          123 LSLM  126 (215)
T ss_dssp             SCCC
T ss_pred             hhcc
Confidence            9998

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.39  E-value=3.1e-07  Score=75.65  Aligned_cols=76  Identities=17%  Similarity=0.104  Sum_probs=61.2

Q ss_pred             HHhhcccCCCcceEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHHHhCCCC-CCceEEEcccCC-CCCCC--CEEEe
Q 024046          188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQI-KAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG--DAILM  261 (273)
Q Consensus       188 il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l-~~~~~Dl-p~v~~~a~~~-~ri~~~~gD~f~-~~p~~--D~~~l  261 (273)
                      ++..+.  .+..+|||||||+|.++..+     .. +++++|. |.+++.++.. ++++++.+|+.+ +++.+  |+|++
T Consensus        29 ~l~~~~--~~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~  101 (211)
T 2gs9_A           29 ALKGLL--PPGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLL  101 (211)
T ss_dssp             HHHTTC--CCCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEE
T ss_pred             HHHHhc--CCCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEE
Confidence            444443  36689999999999999887     44 8999998 8888877654 789999999987 56653  99999


Q ss_pred             cccccccCC
Q 024046          262 KVGNFENYQ  270 (273)
Q Consensus       262 ~~vLHd~~~  270 (273)
                      .+++|+.++
T Consensus       102 ~~~l~~~~~  110 (211)
T 2gs9_A          102 FTTLEFVED  110 (211)
T ss_dssp             ESCTTTCSC
T ss_pred             cChhhhcCC
Confidence            999998865

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=98.38  E-value=5.1e-07  Score=76.48  Aligned_cols=67  Identities=15%  Similarity=0.368  Sum_probs=54.1

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCC------------CCCCceEEEcccCC--C--CCCC--
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP------------SYAGVEHVGGNMFE--S--VPEG--  256 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~------------~~~ri~~~~gD~f~--~--~p~~--  256 (273)
                      .+..+|||||||+|.++..+++++|+.+++++|+ +.+++.|+            ..++|+++.+|+..  +  ++.+  
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~  124 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL  124 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence            3567899999999999999999999999999998 77776442            23689999999986  3  5554  


Q ss_pred             CEEEec
Q 024046          257 DAILMK  262 (273)
Q Consensus       257 D~~~l~  262 (273)
                      |.+++.
T Consensus       125 D~v~~~  130 (235)
T 3ckk_A          125 TKMFFL  130 (235)
T ss_dssp             EEEEEE
T ss_pred             eEEEEe
Confidence            888753

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=98.37  E-value=8.4e-07  Score=74.17  Aligned_cols=81  Identities=14%  Similarity=0.223  Sum_probs=65.1

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC----CCceEEEcccCCCCC-C-C-C
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFESVP-E-G-D  257 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~----~ri~~~~gD~f~~~p-~-~-D  257 (273)
                      ..++..+. ..+..+|||||||+|.++..+++..  .+++++|. |.+++.++..    ++++++.+|+.+..+ . . |
T Consensus        60 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD  136 (231)
T 1vbf_A           60 IFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD  136 (231)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred             HHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCcc
Confidence            34555555 5677899999999999999999997  67999998 8888777642    389999999988544 2 3 9


Q ss_pred             EEEecccccccC
Q 024046          258 AILMKVGNFENY  269 (273)
Q Consensus       258 ~~~l~~vLHd~~  269 (273)
                      +|++..++|+..
T Consensus       137 ~v~~~~~~~~~~  148 (231)
T 1vbf_A          137 RVVVWATAPTLL  148 (231)
T ss_dssp             EEEESSBBSSCC
T ss_pred             EEEECCcHHHHH
Confidence            999999998765

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=98.37  E-value=1.8e-06  Score=72.50  Aligned_cols=66  Identities=14%  Similarity=0.244  Sum_probs=53.7

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhC----CCCCCceEEEcccCCC-----CCCC-CEEE
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDA----PSYAGVEHVGGNMFES-----VPEG-DAIL  260 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a----~~~~ri~~~~gD~f~~-----~p~~-D~~~  260 (273)
                      +.+..+|||||||+|.++..+++.+|..+++++|. |.+++.+    ...++++++.+|+..+     ++.. |+++
T Consensus        72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~  148 (230)
T 1fbn_A           72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY  148 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE
Confidence            55678999999999999999999999888999998 7766544    3347899999999862     3333 9987

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=98.37  E-value=8.3e-07  Score=79.53  Aligned_cols=85  Identities=20%  Similarity=0.243  Sum_probs=66.0

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCC-------CCceEEEcccCC-CCCCC-
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-  256 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~-------~ri~~~~gD~f~-~~p~~-  256 (273)
                      ..+++.+. ..+..+|||||||+|.++..++++ +..+++++|...+++.|+..       ++|+++.+|+.+ +.|+. 
T Consensus        40 ~~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~  117 (348)
T 2y1w_A           40 RAILQNHT-DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQV  117 (348)
T ss_dssp             HHHHHTGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCE
T ss_pred             HHHHhccc-cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCce
Confidence            34555555 456689999999999999998886 66789999995566655431       689999999988 56654 


Q ss_pred             CEEEecccccccCCCC
Q 024046          257 DAILMKVGNFENYQSH  272 (273)
Q Consensus       257 D~~~l~~vLHd~~~~~  272 (273)
                      |+|+...++|.+.++.
T Consensus       118 D~Ivs~~~~~~~~~~~  133 (348)
T 2y1w_A          118 DIIISEPMGYMLFNER  133 (348)
T ss_dssp             EEEEECCCBTTBTTTS
T ss_pred             eEEEEeCchhcCChHH
Confidence            9999998888776653

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=98.36  E-value=4.9e-07  Score=76.78  Aligned_cols=58  Identities=16%  Similarity=0.388  Sum_probs=48.9

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCC--------------CCCCceEEEcccCCC
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP--------------SYAGVEHVGGNMFES  252 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~--------------~~~ri~~~~gD~f~~  252 (273)
                      .++..+|||||||+|.++..+++.+|+.+++++|. +.+++.++              ..++++++.+|.++.
T Consensus        47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~  119 (246)
T 2vdv_E           47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKF  119 (246)
T ss_dssp             BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSC
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHH
Confidence            34668999999999999999999999999999997 77776553              226799999999873

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=98.34  E-value=3.8e-07  Score=76.84  Aligned_cols=69  Identities=20%  Similarity=0.343  Sum_probs=57.7

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCC----CC-CEEEe
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVP----EG-DAILM  261 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p----~~-D~~~l  261 (273)
                      ..+..+|||||||+|..+..+++.+|..+++++|+ |.+++.|+..       ++|+++.+|+.+..|    .. |+|++
T Consensus        69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~  148 (232)
T 3ntv_A           69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI  148 (232)
T ss_dssp             HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred             hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence            44678999999999999999999999999999998 8888877642       589999999988544    33 99986


Q ss_pred             cc
Q 024046          262 KV  263 (273)
Q Consensus       262 ~~  263 (273)
                      ..
T Consensus       149 ~~  150 (232)
T 3ntv_A          149 DA  150 (232)
T ss_dssp             ET
T ss_pred             cC
Confidence            53

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.34  E-value=4e-07  Score=80.47  Aligned_cols=69  Identities=19%  Similarity=0.189  Sum_probs=57.6

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC------CCCceEEEcccCC---CCCC-C-CEEEecccc
Q 024046          198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE---SVPE-G-DAILMKVGN  265 (273)
Q Consensus       198 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gD~f~---~~p~-~-D~~~l~~vL  265 (273)
                      ..+|||||||.|.++..+++.+|+.+++++|+ |.|++.|++      .+|++++.+|.++   ..+. . |+|++--..
T Consensus        90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~  169 (317)
T 3gjy_A           90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA  169 (317)
T ss_dssp             GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred             CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence            34999999999999999999999999999999 999988764      2689999999876   3443 3 999885444


Q ss_pred             c
Q 024046          266 F  266 (273)
Q Consensus       266 H  266 (273)
                      |
T Consensus       170 ~  170 (317)
T 3gjy_A          170 G  170 (317)
T ss_dssp             T
T ss_pred             c
Confidence            4

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=98.33  E-value=9.7e-07  Score=72.46  Aligned_cols=72  Identities=14%  Similarity=0.125  Sum_probs=58.3

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCCCCCC-CEEEeccccc
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPEG-DAILMKVGNF  266 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~p~~-D~~~l~~vLH  266 (273)
                      ..+..+|||||||+|.++..+++ +|..+++++|. |.+++.|+..      ++++++.+|+....+.. |+|++...+|
T Consensus        58 ~~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~  136 (205)
T 3grz_A           58 MVKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAE  136 (205)
T ss_dssp             CSSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHH
T ss_pred             ccCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHH
Confidence            34668999999999999999776 57789999998 8888877642      34999999998855554 9999987776


Q ss_pred             c
Q 024046          267 E  267 (273)
Q Consensus       267 d  267 (273)
                      .
T Consensus       137 ~  137 (205)
T 3grz_A          137 I  137 (205)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=98.33  E-value=7.9e-07  Score=74.79  Aligned_cols=69  Identities=13%  Similarity=-0.004  Sum_probs=52.5

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec--hHHHHhC---CCC------CCceEEEcccCCCCCC--CCEEEec
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL--PHVVQDA---PSY------AGVEHVGGNMFESVPE--GDAILMK  262 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl--p~v~~~a---~~~------~ri~~~~gD~f~~~p~--~D~~~l~  262 (273)
                      ....+|||||||+|.++..+++++|+.+++++|+  +.+++.|   +..      ++|+++.+|... +|.  .|.+...
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~-l~~~~~d~v~~i  101 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAES-LPFELKNIADSI  101 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTB-CCGGGTTCEEEE
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHH-hhhhccCeEEEE
Confidence            4568999999999999999999999999999998  4555544   432      679999999876 353  2555444


Q ss_pred             ccc
Q 024046          263 VGN  265 (273)
Q Consensus       263 ~vL  265 (273)
                      .+.
T Consensus       102 ~~~  104 (225)
T 3p2e_A          102 SIL  104 (225)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            443

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=98.32  E-value=7.5e-07  Score=72.94  Aligned_cols=74  Identities=18%  Similarity=0.201  Sum_probs=58.1

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-CCceEEEcccCCCCCCC-CEEEecccccccCC
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFESVPEG-DAILMKVGNFENYQ  270 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-~ri~~~~gD~f~~~p~~-D~~~l~~vLHd~~~  270 (273)
                      .....+|||||||+|.++..+++. +..+++++|+ |.+++.++.+ .+++++.+|+.+ +|.. |++++.-.+|.+.+
T Consensus        49 ~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~~~  125 (200)
T 1ne2_A           49 NIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIMNPPFGSVVK  125 (200)
T ss_dssp             SSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEECCCC-----
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHH-CCCCeeEEEECCCchhccC
Confidence            346689999999999999999987 6567999998 8888877653 489999999987 5554 99999988887764

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.31  E-value=8.9e-07  Score=75.40  Aligned_cols=77  Identities=6%  Similarity=0.232  Sum_probs=59.3

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----CCCceEEEcccCC-CCCC-CC
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE-SVPE-GD  257 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~ri~~~~gD~f~-~~p~-~D  257 (273)
                      ...+++..+ ..+..+|||||||+|.++..++++.  .+++++|+ |.+++.++.    .++++++.+|+.+ +++. .+
T Consensus        19 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~   95 (244)
T 1qam_A           19 IDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQS   95 (244)
T ss_dssp             HHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCC
T ss_pred             HHHHHHhCC-CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCC
Confidence            345666665 6677899999999999999999997  67899998 777776653    3789999999998 6664 35


Q ss_pred             EEEeccc
Q 024046          258 AILMKVG  264 (273)
Q Consensus       258 ~~~l~~v  264 (273)
                      ..++++.
T Consensus        96 ~~vv~nl  102 (244)
T 1qam_A           96 YKIFGNI  102 (244)
T ss_dssp             CEEEEEC
T ss_pred             eEEEEeC
Confidence            4555543

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.31  E-value=7.2e-07  Score=77.22  Aligned_cols=72  Identities=15%  Similarity=0.086  Sum_probs=59.2

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC-CC-CCC--CEEEec
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SV-PEG--DAILMK  262 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~-p~~--D~~~l~  262 (273)
                      ..+..+|||||||+|.++..+++. +..+++++|+ |.+++.|+..       ++++++.+|+.+ ++ +.+  |+|++.
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~  140 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ  140 (298)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred             CCCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEEC
Confidence            456789999999999999998776 5668999998 8888776542       469999999998 55 343  999999


Q ss_pred             ccccc
Q 024046          263 VGNFE  267 (273)
Q Consensus       263 ~vLHd  267 (273)
                      .++|.
T Consensus       141 ~~l~~  145 (298)
T 1ri5_A          141 FSFHY  145 (298)
T ss_dssp             SCGGG
T ss_pred             chhhh
Confidence            99986

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=98.30  E-value=1.7e-06  Score=71.54  Aligned_cols=74  Identities=18%  Similarity=0.221  Sum_probs=59.1

Q ss_pred             HHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------C-CceEEEcccCCCCC---CC
Q 024046          188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A-GVEHVGGNMFESVP---EG  256 (273)
Q Consensus       188 il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~-ri~~~~gD~f~~~p---~~  256 (273)
                      ++..++ .....+|||||||+|.++..++++  ..+++++|+ |.+++.|++.      + +++++.+|+.+.++   ..
T Consensus        47 ~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~  123 (204)
T 3njr_A           47 TLAALA-PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLP  123 (204)
T ss_dssp             HHHHHC-CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCC
T ss_pred             HHHhcC-CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCC
Confidence            344455 667789999999999999999998  778999998 8888877642      4 89999999988433   34


Q ss_pred             CEEEeccc
Q 024046          257 DAILMKVG  264 (273)
Q Consensus       257 D~~~l~~v  264 (273)
                      |++++...
T Consensus       124 D~v~~~~~  131 (204)
T 3njr_A          124 EAVFIGGG  131 (204)
T ss_dssp             SEEEECSC
T ss_pred             CEEEECCc
Confidence            99987654

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=98.30  E-value=1.5e-06  Score=73.67  Aligned_cols=75  Identities=16%  Similarity=0.261  Sum_probs=62.1

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhCCC-------CCCceEEEcccCCC-CCC
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFES-VPE  255 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gD~f~~-~p~  255 (273)
                      ..++..++ +.+..+|||+|||+|.++..+++. .|..+++++|. |.+++.|+.       .++++++.+|+.+. ++.
T Consensus        86 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~  164 (258)
T 2pwy_A           86 SAMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEE  164 (258)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCT
T ss_pred             HHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC
Confidence            34566666 677889999999999999999999 78899999998 888777653       26899999999984 775


Q ss_pred             C--CEEEe
Q 024046          256 G--DAILM  261 (273)
Q Consensus       256 ~--D~~~l  261 (273)
                      +  |+|++
T Consensus       165 ~~~D~v~~  172 (258)
T 2pwy_A          165 AAYDGVAL  172 (258)
T ss_dssp             TCEEEEEE
T ss_pred             CCcCEEEE
Confidence            3  99987

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=98.29  E-value=7.7e-07  Score=75.73  Aligned_cols=70  Identities=11%  Similarity=0.099  Sum_probs=56.8

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEccc----CCCCC----CC-CEE
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNM----FESVP----EG-DAI  259 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~----f~~~p----~~-D~~  259 (273)
                      +..+|||||||+|.++..+++++|+.+++++|+ |.+++.|+.+       +||+++.+|.    +++++    .. |+|
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i  144 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  144 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence            457999999999999999999999999999998 8888877642       5799999994    44555    23 999


Q ss_pred             Eeccccc
Q 024046          260 LMKVGNF  266 (273)
Q Consensus       260 ~l~~vLH  266 (273)
                      ++.-..|
T Consensus       145 ~~npp~~  151 (254)
T 2h00_A          145 MCNPPFF  151 (254)
T ss_dssp             EECCCCC
T ss_pred             EECCCCc
Confidence            9874444

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=98.29  E-value=1.3e-06  Score=77.09  Aligned_cols=82  Identities=22%  Similarity=0.297  Sum_probs=65.8

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCCC------CCceEEEcccCCCCC-C-C
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP-E-G  256 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~p-~-~  256 (273)
                      .+++.++ ..+..+|||||||+|.++..+++..+ +.+++++|+ |.+++.|+..      ++++++.+|+.+..+ . .
T Consensus        66 ~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~  144 (317)
T 1dl5_A           66 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSP  144 (317)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred             HHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCC
Confidence            4455555 66778999999999999999999988 488999998 8888777642      569999999987433 2 3


Q ss_pred             -CEEEecccccccC
Q 024046          257 -DAILMKVGNFENY  269 (273)
Q Consensus       257 -D~~~l~~vLHd~~  269 (273)
                       |+|++..++|...
T Consensus       145 fD~Iv~~~~~~~~~  158 (317)
T 1dl5_A          145 YDVIFVTVGVDEVP  158 (317)
T ss_dssp             EEEEEECSBBSCCC
T ss_pred             eEEEEEcCCHHHHH
Confidence             9999999998654

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.29  E-value=1.2e-06  Score=69.18  Aligned_cols=79  Identities=15%  Similarity=0.195  Sum_probs=60.9

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeechHHHHhCCCCCCceEEEcccCC-C--------CCC-
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFE-S--------VPE-  255 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dlp~v~~~a~~~~ri~~~~gD~f~-~--------~p~-  255 (273)
                      .+++.+....+..+|||||||+|.++..+++.+ |+.+++++|+..++    ..++++++.+|+.+ +        ++. 
T Consensus        12 ~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (180)
T 1ej0_A           12 EIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD----PIVGVDFLQGDFRDELVMKALLERVGDS   87 (180)
T ss_dssp             HHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC----CCTTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred             HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcccc----ccCcEEEEEcccccchhhhhhhccCCCC
Confidence            344544424566799999999999999999995 78899999995532    23789999999988 4        564 


Q ss_pred             C-CEEEecccccccC
Q 024046          256 G-DAILMKVGNFENY  269 (273)
Q Consensus       256 ~-D~~~l~~vLHd~~  269 (273)
                      . |++++...+|...
T Consensus        88 ~~D~i~~~~~~~~~~  102 (180)
T 1ej0_A           88 KVQVVMSDMAPNMSG  102 (180)
T ss_dssp             CEEEEEECCCCCCCS
T ss_pred             ceeEEEECCCccccC
Confidence            3 9999988877543

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=98.29  E-value=2.3e-06  Score=76.38  Aligned_cols=76  Identities=18%  Similarity=0.245  Sum_probs=59.0

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCC-------CCceEEEcccCC-CCCC-C-
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPE-G-  256 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~-------~ri~~~~gD~f~-~~p~-~-  256 (273)
                      .+.+... ..+..+|||||||+|.++..++++ +..+++++|...+++.|++.       ++|+++.+|+.+ ++|. . 
T Consensus        55 ~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  132 (340)
T 2fyt_A           55 FIYQNPH-IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKV  132 (340)
T ss_dssp             HHHHCGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCE
T ss_pred             HHHhhhh-hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcE
Confidence            3444444 556789999999999999999987 55689999995577766542       789999999987 6663 3 


Q ss_pred             CEEEeccc
Q 024046          257 DAILMKVG  264 (273)
Q Consensus       257 D~~~l~~v  264 (273)
                      |+|+...+
T Consensus       133 D~Ivs~~~  140 (340)
T 2fyt_A          133 DVIISEWM  140 (340)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEcCc
Confidence            99997664

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=98.28  E-value=8.4e-07  Score=79.52  Aligned_cols=72  Identities=18%  Similarity=0.224  Sum_probs=57.8

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCC-------CCceEEEcccCC-CCCCC--CEEEecccc
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPEG--DAILMKVGN  265 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~-------~ri~~~~gD~f~-~~p~~--D~~~l~~vL  265 (273)
                      .+..+|||||||+|.++..++++ +..+++++|..++++.|++.       ++|+++.+|+.+ ++|.+  |+|+...+.
T Consensus        65 ~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~  143 (349)
T 3q7e_A           65 FKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG  143 (349)
T ss_dssp             HTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred             CCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence            45689999999999999999998 77789999996677766542       679999999998 67743  999986654


Q ss_pred             ccc
Q 024046          266 FEN  268 (273)
Q Consensus       266 Hd~  268 (273)
                      |..
T Consensus       144 ~~l  146 (349)
T 3q7e_A          144 YCL  146 (349)
T ss_dssp             BTB
T ss_pred             ccc
Confidence            443

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=98.28  E-value=6.2e-07  Score=76.37  Aligned_cols=69  Identities=19%  Similarity=0.300  Sum_probs=56.7

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC---CCCC--C-CEE
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE---SVPE--G-DAI  259 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~---~~p~--~-D~~  259 (273)
                      ..+..+|||||||+|..+..+++.+| +.+++++|+ |..++.|+..       ++|+++.+|..+   .++.  . |+|
T Consensus        61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V  140 (248)
T 3tfw_A           61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI  140 (248)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred             hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence            44678999999999999999999999 889999998 8888777642       589999999876   2332  3 999


Q ss_pred             Eecc
Q 024046          260 LMKV  263 (273)
Q Consensus       260 ~l~~  263 (273)
                      ++..
T Consensus       141 ~~d~  144 (248)
T 3tfw_A          141 FIDA  144 (248)
T ss_dssp             EECS
T ss_pred             EECC
Confidence            8754

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=98.28  E-value=7.2e-07  Score=71.74  Aligned_cols=78  Identities=19%  Similarity=0.178  Sum_probs=61.9

Q ss_pred             HHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCCC--C-
Q 024046          188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE--G-  256 (273)
Q Consensus       188 il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p~--~-  256 (273)
                      ++..++ ..+..+|||||||+|.++..+++..  .+++++|. |.+++.++..       ++++++.+|+.+++|.  . 
T Consensus        25 ~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  101 (192)
T 1l3i_A           25 IMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDI  101 (192)
T ss_dssp             HHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCE
T ss_pred             HHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCC
Confidence            344444 5677899999999999999999998  78999998 8877776542       6899999999875553  3 


Q ss_pred             CEEEeccccccc
Q 024046          257 DAILMKVGNFEN  268 (273)
Q Consensus       257 D~~~l~~vLHd~  268 (273)
                      |++++..++|++
T Consensus       102 D~v~~~~~~~~~  113 (192)
T 1l3i_A          102 DIAVVGGSGGEL  113 (192)
T ss_dssp             EEEEESCCTTCH
T ss_pred             CEEEECCchHHH
Confidence            999998877653

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.27  E-value=4.3e-07  Score=76.83  Aligned_cols=65  Identities=22%  Similarity=0.306  Sum_probs=52.6

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCC---CCCCC--CEEEe
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE---SVPEG--DAILM  261 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~---~~p~~--D~~~l  261 (273)
                      ....+|||||||.|..+..+++..|. +.+++|+ |.+++.|++.     .+++++.+|...   ++|.+  |.+++
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~  134 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILY  134 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEE
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEE
Confidence            46689999999999999999998885 7899998 9999988652     568889998754   46653  77764

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=98.27  E-value=1.3e-06  Score=75.52  Aligned_cols=75  Identities=19%  Similarity=0.230  Sum_probs=62.2

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCCCC
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEG  256 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p~~  256 (273)
                      ..++..++ +.+..+|||+|||+|.++..++++ .|..+++++|. |..++.|+..       ++++++.+|+.+.++.+
T Consensus       102 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  180 (277)
T 1o54_A          102 SFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEK  180 (277)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCC
T ss_pred             HHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCC
Confidence            34566665 667789999999999999999999 78999999998 8888777642       58999999999876643


Q ss_pred             --CEEEe
Q 024046          257 --DAILM  261 (273)
Q Consensus       257 --D~~~l  261 (273)
                        |+|++
T Consensus       181 ~~D~V~~  187 (277)
T 1o54_A          181 DVDALFL  187 (277)
T ss_dssp             SEEEEEE
T ss_pred             ccCEEEE
Confidence              99987

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=98.26  E-value=7.1e-07  Score=71.49  Aligned_cols=70  Identities=13%  Similarity=0.037  Sum_probs=55.9

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCC---CCCC-CEEEec
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---VPEG-DAILMK  262 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~---~p~~-D~~~l~  262 (273)
                      .....+|||||||+|.++..++++ +..+++++|+ |.+++.|+..       ++++++.+|+.+.   .+.. |++++.
T Consensus        29 ~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~  107 (177)
T 2esr_A           29 YFNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLD  107 (177)
T ss_dssp             CCCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEEC
T ss_pred             hcCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEEC
Confidence            345679999999999999999988 7778999998 8888877542       4799999999873   2333 999986


Q ss_pred             ccc
Q 024046          263 VGN  265 (273)
Q Consensus       263 ~vL  265 (273)
                      ...
T Consensus       108 ~~~  110 (177)
T 2esr_A          108 PPY  110 (177)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            544

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=98.26  E-value=6e-07  Score=75.93  Aligned_cols=70  Identities=17%  Similarity=0.228  Sum_probs=56.9

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCC-CC----CCC-CEEEe
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SV----PEG-DAILM  261 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~~----p~~-D~~~l  261 (273)
                      +++..+|||||||+|..+..+++..|+.+++++|. |.+++.|+..      ++|+++.+|+.+ +.    +.. |+|++
T Consensus        68 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~  147 (240)
T 1xdz_A           68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA  147 (240)
T ss_dssp             GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred             cCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEE
Confidence            34668999999999999999999999999999998 8777776542      579999999876 33    233 99998


Q ss_pred             ccc
Q 024046          262 KVG  264 (273)
Q Consensus       262 ~~v  264 (273)
                      ..+
T Consensus       148 ~~~  150 (240)
T 1xdz_A          148 RAV  150 (240)
T ss_dssp             ECC
T ss_pred             ecc
Confidence            653

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=98.26  E-value=6e-07  Score=74.88  Aligned_cols=73  Identities=8%  Similarity=0.145  Sum_probs=59.3

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC---CCC-----C-CC
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE---SVP-----E-GD  257 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~---~~p-----~-~D  257 (273)
                      .+..+|||||||+|..+..++++.| +.+++.+|+ |.+++.|+++       ++|+++.+|..+   ..+     . .|
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD  136 (221)
T 3u81_A           57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD  136 (221)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence            4568999999999999999999875 889999998 8888877652       579999999854   233     2 39


Q ss_pred             EEEeccccccc
Q 024046          258 AILMKVGNFEN  268 (273)
Q Consensus       258 ~~~l~~vLHd~  268 (273)
                      +|++....|.+
T Consensus       137 ~V~~d~~~~~~  147 (221)
T 3u81_A          137 MVFLDHWKDRY  147 (221)
T ss_dssp             EEEECSCGGGH
T ss_pred             EEEEcCCcccc
Confidence            99998776655

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=98.26  E-value=1e-06  Score=71.85  Aligned_cols=71  Identities=14%  Similarity=0.225  Sum_probs=57.6

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC-C-CC-CC-CEEEe
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-S-VP-EG-DAILM  261 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~-~p-~~-D~~~l  261 (273)
                      ..+..+|||||||+|.++..+++++ |..+++++|+ |.+++.|+..       ++++++.+|+.. + .+ .. |++++
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~   99 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF   99 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence            4566899999999999999999997 7789999998 8888877642       689999999876 2 33 33 99987


Q ss_pred             cccc
Q 024046          262 KVGN  265 (273)
Q Consensus       262 ~~vL  265 (273)
                      ...+
T Consensus       100 ~~~~  103 (197)
T 3eey_A          100 NLGY  103 (197)
T ss_dssp             EESB
T ss_pred             cCCc
Confidence            7644

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.26  E-value=1.1e-06  Score=74.53  Aligned_cols=71  Identities=11%  Similarity=0.019  Sum_probs=59.4

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCCC-CCC-CCEEEeccccc
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFES-VPE-GDAILMKVGNF  266 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~~-~p~-~D~~~l~~vLH  266 (273)
                      +..+.+|+|||||.|-++..+.   |..+.+++|+ +..++.++..     .+.++..+|+... .|. +|++++.-++|
T Consensus       103 ~~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh  179 (253)
T 3frh_A          103 AETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLP  179 (253)
T ss_dssp             SCCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHH
T ss_pred             CCCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHH
Confidence            4568899999999999999888   9999999999 8888877653     6789999999984 444 49999998877


Q ss_pred             cc
Q 024046          267 EN  268 (273)
Q Consensus       267 d~  268 (273)
                      +-
T Consensus       180 ~L  181 (253)
T 3frh_A          180 LL  181 (253)
T ss_dssp             HH
T ss_pred             Hh
Confidence            64

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.25  E-value=1.4e-06  Score=76.22  Aligned_cols=69  Identities=19%  Similarity=0.269  Sum_probs=58.1

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCCCCC--CCEEEeccc
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE--GDAILMKVG  264 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~p~--~D~~~l~~v  264 (273)
                      .+...+|||||||+|.++..++.+.|+.+++++|+ |++++.|++.      ++|+++.||..+ +|.  .|+|++...
T Consensus       120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~-l~d~~FDvV~~~a~  197 (298)
T 3fpf_A          120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETV-IDGLEFDVLMVAAL  197 (298)
T ss_dssp             CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGG-GGGCCCSEEEECTT
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhh-CCCCCcCEEEECCC
Confidence            67889999999999988877777889999999998 9999888753      789999999987 443  399997654

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=98.25  E-value=8.5e-07  Score=74.46  Aligned_cols=72  Identities=13%  Similarity=0.255  Sum_probs=59.1

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCC---C--CCC-CEEEe
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---V--PEG-DAILM  261 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~---~--p~~-D~~~l  261 (273)
                      .+..+|||||||+|..+..+++.+|..+++++|. |..++.|+..       ++|+++.+|+...   .  +.. |+|++
T Consensus        53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  132 (233)
T 2gpy_A           53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI  132 (233)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence            4567999999999999999999999999999998 8888777642       5799999999873   2  233 99998


Q ss_pred             cccccc
Q 024046          262 KVGNFE  267 (273)
Q Consensus       262 ~~vLHd  267 (273)
                      ....++
T Consensus       133 ~~~~~~  138 (233)
T 2gpy_A          133 DAAKGQ  138 (233)
T ss_dssp             EGGGSC
T ss_pred             CCCHHH
Confidence            776543

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=98.25  E-value=6e-07  Score=75.66  Aligned_cols=72  Identities=14%  Similarity=0.150  Sum_probs=59.3

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCCC--CCEEEeccccc
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE--GDAILMKVGNF  266 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p~--~D~~~l~~vLH  266 (273)
                      ...+|||||||+|.++..+++..  .+++++|+ |.+++.|+..       ++++++.+|+.+..+.  .|+|++...+|
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~  155 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG  155 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred             CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence            56899999999999999999985  78999998 8888877642       4899999999883343  39999988888


Q ss_pred             ccCC
Q 024046          267 ENYQ  270 (273)
Q Consensus       267 d~~~  270 (273)
                      ...+
T Consensus       156 ~~~~  159 (241)
T 3gdh_A          156 GPDY  159 (241)
T ss_dssp             SGGG
T ss_pred             Ccch
Confidence            6544

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=98.25  E-value=1.5e-06  Score=74.58  Aligned_cols=68  Identities=15%  Similarity=0.283  Sum_probs=56.1

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-------C---CCceEEEcccCCC--------CCC
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------Y---AGVEHVGGNMFES--------VPE  255 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~---~ri~~~~gD~f~~--------~p~  255 (273)
                      ..+..+|||||||+|.++..+++++|..+++++|+ |.+++.|+.       .   +||+++.+|+.+.        ++.
T Consensus        34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  113 (260)
T 2ozv_A           34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD  113 (260)
T ss_dssp             CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred             ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence            45667999999999999999999999999999998 777776543       1   3699999999874        343


Q ss_pred             -C-CEEEec
Q 024046          256 -G-DAILMK  262 (273)
Q Consensus       256 -~-D~~~l~  262 (273)
                       . |+|++.
T Consensus       114 ~~fD~Vv~n  122 (260)
T 2ozv_A          114 EHFHHVIMN  122 (260)
T ss_dssp             TCEEEEEEC
T ss_pred             CCcCEEEEC
Confidence             3 999986

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.25  E-value=2e-06  Score=74.95  Aligned_cols=75  Identities=19%  Similarity=0.359  Sum_probs=59.7

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC-CCCC
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPE  255 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~p~  255 (273)
                      +..+++.++ ..+..+|||||||+|.++..++++..  +++++|+ |.+++.++..       ++++++.+|+.+ ++|.
T Consensus        17 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~   93 (285)
T 1zq9_A           17 INSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF   93 (285)
T ss_dssp             HHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC
T ss_pred             HHHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchh
Confidence            345666665 66778999999999999999999964  6899998 7777766531       579999999997 6776


Q ss_pred             CCEEEec
Q 024046          256 GDAILMK  262 (273)
Q Consensus       256 ~D~~~l~  262 (273)
                      .|+++..
T Consensus        94 fD~vv~n  100 (285)
T 1zq9_A           94 FDTCVAN  100 (285)
T ss_dssp             CSEEEEE
T ss_pred             hcEEEEe
Confidence            6988873

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=98.25  E-value=8.3e-07  Score=75.84  Aligned_cols=69  Identities=19%  Similarity=0.166  Sum_probs=56.5

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCC-CC----CCC-CEEEec
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SV----PEG-DAILMK  262 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~~----p~~-D~~~l~  262 (273)
                      ....+|||||||+|..+..++..+|+.+++++|. +..++.++..      ++|+++.+|+.+ +.    ... |+|+.+
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~  158 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR  158 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence            4678999999999999999999999999999997 7777776642      569999999976 32    133 999886


Q ss_pred             cc
Q 024046          263 VG  264 (273)
Q Consensus       263 ~v  264 (273)
                      .+
T Consensus       159 a~  160 (249)
T 3g89_A          159 AV  160 (249)
T ss_dssp             SS
T ss_pred             Cc
Confidence            54

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.24  E-value=4e-06  Score=73.57  Aligned_cols=72  Identities=15%  Similarity=0.053  Sum_probs=57.6

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------------CCceEEEcccCC-C----CC--
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------------AGVEHVGGNMFE-S----VP--  254 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------------~ri~~~~gD~f~-~----~p--  254 (273)
                      ....+|||||||+|.++..+++ .|..+++++|+ |.+++.++..             .+++++.+|+.. +    ++  
T Consensus        33 ~~~~~VLDlGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~  111 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDLLKWKK-GRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP  111 (313)
T ss_dssp             --CCEEEEETCTTTTTHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred             CCCCEEEEECCCCcHHHHHHHh-cCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence            4668999999999999999988 46778999998 7777776532             379999999987 3    42  


Q ss_pred             C-C-CEEEeccccccc
Q 024046          255 E-G-DAILMKVGNFEN  268 (273)
Q Consensus       255 ~-~-D~~~l~~vLHd~  268 (273)
                      . . |+|++..+||..
T Consensus       112 ~~~fD~V~~~~~l~~~  127 (313)
T 3bgv_A          112 QMCFDICSCQFVCHYS  127 (313)
T ss_dssp             TCCEEEEEEETCGGGG
T ss_pred             CCCEEEEEEecchhhc
Confidence            2 3 999999999875

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=98.23  E-value=8.3e-07  Score=71.42  Aligned_cols=71  Identities=11%  Similarity=-0.021  Sum_probs=56.6

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCC------CCC-CEE
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESV------PEG-DAI  259 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~------p~~-D~~  259 (273)
                      .....+|||+|||+|.++..+++ .+..+++++|+ |.+++.|+..       ++++++.+|+.+..      +.. |++
T Consensus        42 ~~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i  120 (187)
T 2fhp_A           42 YFDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLV  120 (187)
T ss_dssp             CCSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             hcCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEE
Confidence            34567999999999999999887 56678999998 8888877642       57999999998732      233 999


Q ss_pred             Eeccccc
Q 024046          260 LMKVGNF  266 (273)
Q Consensus       260 ~l~~vLH  266 (273)
                      ++....|
T Consensus       121 ~~~~~~~  127 (187)
T 2fhp_A          121 LLDPPYA  127 (187)
T ss_dssp             EECCCGG
T ss_pred             EECCCCC
Confidence            9876644

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.23  E-value=2.3e-06  Score=71.51  Aligned_cols=65  Identities=14%  Similarity=0.197  Sum_probs=54.5

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-CCCceEEEcccCCC--CC-CC--CEEEec
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFES--VP-EG--DAILMK  262 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-~~ri~~~~gD~f~~--~p-~~--D~~~l~  262 (273)
                      ++..+|||||||+|.++..++++  ..+++++|+ |.+++.++. .++++++.+|+.++  ++ .+  |+|++.
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~  118 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR  118 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC
Confidence            45689999999999999999998  568999998 888888765 47899999999874  44 33  999876

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.22  E-value=2.4e-06  Score=74.27  Aligned_cols=75  Identities=15%  Similarity=0.127  Sum_probs=52.9

Q ss_pred             CcceEEEecCCccHHHH----HHHHHCCCCeE--EEeec-hHHHHhCCCC-------CCceE--EEcccCC-C------C
Q 024046          197 NVERLVDVGGGFGVTLS----MITSKYPQIKA--VNFDL-PHVVQDAPSY-------AGVEH--VGGNMFE-S------V  253 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~----~l~~~~P~l~~--~~~Dl-p~v~~~a~~~-------~ri~~--~~gD~f~-~------~  253 (273)
                      +..+|||||||+|.++.    .++.++|+.++  +++|. +++++.|++.       +++++  ..+|.-. +      +
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  131 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK  131 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence            45799999999997544    55677898854  99997 8888766532       34444  4444432 1      3


Q ss_pred             CC-C-CEEEecccccccCCC
Q 024046          254 PE-G-DAILMKVGNFENYQS  271 (273)
Q Consensus       254 p~-~-D~~~l~~vLHd~~~~  271 (273)
                      +. . |+|+++++||+++|.
T Consensus       132 ~~~~fD~V~~~~~l~~~~d~  151 (292)
T 2aot_A          132 ELQKWDFIHMIQMLYYVKDI  151 (292)
T ss_dssp             CCCCEEEEEEESCGGGCSCH
T ss_pred             CCCceeEEEEeeeeeecCCH
Confidence            33 3 999999999999873

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.21  E-value=1.4e-06  Score=74.42  Aligned_cols=71  Identities=21%  Similarity=0.268  Sum_probs=56.4

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCCCCceEEEcccCC-CCCCC--CEEEecccccccC
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILMKVGNFENY  269 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gD~f~-~~p~~--D~~~l~~vLHd~~  269 (273)
                      +..+|||||||+|.++..++++  ..+++++|. |.+++.++....-.++.+|+.+ +++.+  |+|++..+++++.
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~  128 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYV  128 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHC
T ss_pred             CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcc
Confidence            6689999999999999999988  468999998 8888877653212389999987 56654  9999988776664

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=98.20  E-value=1.7e-06  Score=73.44  Aligned_cols=73  Identities=16%  Similarity=0.150  Sum_probs=58.9

Q ss_pred             CcceEEEecCCccHHHHHHHHH--CCCCeEEEeec-hHHHHhCCCC---C-------C----------------------
Q 024046          197 NVERLVDVGGGFGVTLSMITSK--YPQIKAVNFDL-PHVVQDAPSY---A-------G----------------------  241 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~--~P~l~~~~~Dl-p~v~~~a~~~---~-------r----------------------  241 (273)
                      ...+|||+|||+|.++..+++.  +|..+++++|+ |.+++.|+..   .       +                      
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  130 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence            5679999999999999999999  88889999998 8888877632   2       2                      


Q ss_pred             ---ce-------------EEEcccCCCC------CC-C-CEEEecccccccC
Q 024046          242 ---VE-------------HVGGNMFESV------PE-G-DAILMKVGNFENY  269 (273)
Q Consensus       242 ---i~-------------~~~gD~f~~~------p~-~-D~~~l~~vLHd~~  269 (273)
                         |+             ++.+|++++.      +. . |+|++....+...
T Consensus       131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~  182 (250)
T 1o9g_A          131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERT  182 (250)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSS
T ss_pred             hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccc
Confidence               77             9999999865      43 3 9999976655443

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=98.20  E-value=1.8e-06  Score=73.85  Aligned_cols=67  Identities=13%  Similarity=0.302  Sum_probs=55.9

Q ss_pred             CC-CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCC---CCC-C-CEEE
Q 024046          195 FQ-NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---VPE-G-DAIL  260 (273)
Q Consensus       195 ~~-~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~---~p~-~-D~~~  260 (273)
                      .. +..+|||||||+|.++..++++.+. +++++|+ |.+++.|+.+       +||+++.+|+.+.   ++. . |+|+
T Consensus        46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii  124 (259)
T 3lpm_A           46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT  124 (259)
T ss_dssp             CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred             CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence            55 6789999999999999999999886 8999998 8888777642       5899999999882   433 3 9999


Q ss_pred             ec
Q 024046          261 MK  262 (273)
Q Consensus       261 l~  262 (273)
                      +.
T Consensus       125 ~n  126 (259)
T 3lpm_A          125 CN  126 (259)
T ss_dssp             EC
T ss_pred             EC
Confidence            85

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=98.19  E-value=2.4e-06  Score=75.89  Aligned_cols=72  Identities=15%  Similarity=0.265  Sum_probs=56.3

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCC-------CCceEEEcccCC-CCC-CC-CEEEecccc
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVP-EG-DAILMKVGN  265 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~-------~ri~~~~gD~f~-~~p-~~-D~~~l~~vL  265 (273)
                      .+..+|||||||+|.++..++++ +..+++++|...+++.|++.       ++|+++.+|+.+ ++| +. |+|++..+.
T Consensus        37 ~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~  115 (328)
T 1g6q_1           37 FKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG  115 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred             cCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCch
Confidence            35579999999999999998887 55689999996677665532       689999999987 566 33 999987554


Q ss_pred             ccc
Q 024046          266 FEN  268 (273)
Q Consensus       266 Hd~  268 (273)
                      |..
T Consensus       116 ~~l  118 (328)
T 1g6q_1          116 YFL  118 (328)
T ss_dssp             TTB
T ss_pred             hhc
Confidence            443

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.18  E-value=1.9e-06  Score=73.74  Aligned_cols=69  Identities=17%  Similarity=0.292  Sum_probs=58.1

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-CCceEEEcccCC-CCCCC--CEEEeccc
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG--DAILMKVG  264 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-~ri~~~~gD~f~-~~p~~--D~~~l~~v  264 (273)
                      .+..+|||||||+|.++..+++++|..+++++|. |.+++.|+.. ++++++.+|+.. +++.+  |+|+...+
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  157 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYA  157 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCC
Confidence            4567999999999999999999999999999998 8888877653 789999999986 55543  99987654

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=98.18  E-value=2.2e-06  Score=76.84  Aligned_cols=77  Identities=17%  Similarity=0.068  Sum_probs=62.7

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhCCCC------CCceEEEcccCC-CCCC
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPE  255 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~~p~  255 (273)
                      +..++.... |.+..+|||+|||+|.+++.++... |+.+++++|+ |.+++.|+.+      ++|+++.+|+.+ +.+.
T Consensus       192 a~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~  270 (354)
T 3tma_A          192 AQALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFF  270 (354)
T ss_dssp             HHHHHHHTT-CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTC
T ss_pred             HHHHHHHhC-CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcccc
Confidence            444555555 7788899999999999999999998 9999999998 8888877653      489999999998 4433


Q ss_pred             -C-CEEEec
Q 024046          256 -G-DAILMK  262 (273)
Q Consensus       256 -~-D~~~l~  262 (273)
                       . |++++.
T Consensus       271 ~~~D~Ii~n  279 (354)
T 3tma_A          271 PEVDRILAN  279 (354)
T ss_dssp             CCCSEEEEC
T ss_pred             CCCCEEEEC
Confidence             3 998873

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=98.18  E-value=1.9e-06  Score=69.42  Aligned_cols=66  Identities=14%  Similarity=0.162  Sum_probs=53.3

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCC--CCCC-C-CEEEec
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE--SVPE-G-DAILMK  262 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~--~~p~-~-D~~~l~  262 (273)
                      .++..+|||||||+|.++..++++  ..+++++|+ |.+++.|++.      ++++++.+|+..  +.+. . |++++.
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~   96 (185)
T 3mti_A           20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFN   96 (185)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEE
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEe
Confidence            456789999999999999999998  778999998 8888877642      689999977755  2333 3 999766

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.17  E-value=1.1e-06  Score=74.00  Aligned_cols=68  Identities=21%  Similarity=0.280  Sum_probs=53.9

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCC---CCCCC--CEEEe-cc
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE---SVPEG--DAILM-KV  263 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~---~~p~~--D~~~l-~~  263 (273)
                      .+..+|||||||+|.++..+++..+. +++++|+ |.+++.|++.     .+++++.+|+.+   +++.+  |+|++ ..
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~  137 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY  137 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcCCC-eEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence            45679999999999999999765554 7899998 8888777542     679999999876   46653  99988 55


Q ss_pred             c
Q 024046          264 G  264 (273)
Q Consensus       264 v  264 (273)
                      .
T Consensus       138 ~  138 (236)
T 1zx0_A          138 P  138 (236)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=98.17  E-value=7.3e-07  Score=74.23  Aligned_cols=70  Identities=19%  Similarity=0.197  Sum_probs=56.8

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCC-------C-CC
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVP-------E-GD  257 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p-------~-~D  257 (273)
                      ..+..+|||||||+|..+..+++++| +.+++++|+ |..++.|+..       ++|+++.+|..+.+|       . .|
T Consensus        56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD  135 (223)
T 3duw_A           56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD  135 (223)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred             hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence            44678999999999999999999999 789999998 8888776542       579999999976322       2 39


Q ss_pred             EEEeccc
Q 024046          258 AILMKVG  264 (273)
Q Consensus       258 ~~~l~~v  264 (273)
                      +|++...
T Consensus       136 ~v~~d~~  142 (223)
T 3duw_A          136 FIFIDAD  142 (223)
T ss_dssp             EEEECSC
T ss_pred             EEEEcCC
Confidence            9987654

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=98.17  E-value=3.7e-06  Score=69.85  Aligned_cols=68  Identities=13%  Similarity=0.115  Sum_probs=53.8

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHH----HHhCCCCCCceEEEcccCCC-----CCCC-CEEEec
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHV----VQDAPSYAGVEHVGGNMFES-----VPEG-DAILMK  262 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v----~~~a~~~~ri~~~~gD~f~~-----~p~~-D~~~l~  262 (273)
                      .++..+|||||||+|.++..+++..|+.+++++|+ |.+    .+.++..+++.++.+|...+     ++.. |++++.
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~  133 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD  133 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe
Confidence            45678999999999999999999998778999998 653    44454457899999998763     3333 999875

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=98.16  E-value=2.5e-06  Score=69.17  Aligned_cols=71  Identities=11%  Similarity=-0.019  Sum_probs=56.2

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCC---CC-C-CCEEEecc
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES---VP-E-GDAILMKV  263 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~---~p-~-~D~~~l~~  263 (273)
                      ....+|||+|||+|.++..++++ +..+++++|+ |.+++.|+.+      ++++++.+|+.+.   ++ . .|++++.-
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~  121 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP  121 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence            35679999999999999988774 5668999998 8888877653      5899999999872   33 3 39999876


Q ss_pred             cccc
Q 024046          264 GNFE  267 (273)
Q Consensus       264 vLHd  267 (273)
                      ..|.
T Consensus       122 p~~~  125 (189)
T 3p9n_A          122 PYNV  125 (189)
T ss_dssp             CTTS
T ss_pred             CCCc
Confidence            6554

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.16  E-value=2.3e-06  Score=74.16  Aligned_cols=70  Identities=23%  Similarity=0.246  Sum_probs=56.9

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcccCCC--C-CCC-CEEE
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFES--V-PEG-DAIL  260 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------~~ri~~~~gD~f~~--~-p~~-D~~~  260 (273)
                      +...+|||||||+|..+..+++.+|..+++++|+ |.+++.|++          .+|++++.+|.++-  . +.. |+|+
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii  153 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence            3568999999999999999999888889999999 888887653          37999999999862  2 233 9999


Q ss_pred             ecccc
Q 024046          261 MKVGN  265 (273)
Q Consensus       261 l~~vL  265 (273)
                      +--.-
T Consensus       154 ~d~~~  158 (275)
T 1iy9_A          154 VDSTE  158 (275)
T ss_dssp             ESCSS
T ss_pred             ECCCC
Confidence            85433

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=98.16  E-value=1.5e-06  Score=76.36  Aligned_cols=75  Identities=16%  Similarity=0.204  Sum_probs=57.4

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcccCCC---CCC-C-CEE
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFES---VPE-G-DAI  259 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------~~ri~~~~gD~f~~---~p~-~-D~~  259 (273)
                      ++..+|||||||+|..+..+++..|..+++++|+ |.+++.|++          .+|++++.+|.++.   .+. . |+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI  173 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence            4668999999999999999999888889999999 888876653          27899999999872   143 3 999


Q ss_pred             EecccccccCC
Q 024046          260 LMKVGNFENYQ  270 (273)
Q Consensus       260 ~l~~vLHd~~~  270 (273)
                      ++....+.+++
T Consensus       174 i~d~~~~~~~~  184 (304)
T 3bwc_A          174 IIDTTDPAGPA  184 (304)
T ss_dssp             EEECC------
T ss_pred             EECCCCccccc
Confidence            99766665543

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=98.15  E-value=4.6e-06  Score=76.76  Aligned_cols=79  Identities=15%  Similarity=0.212  Sum_probs=60.1

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhC-------CC--------CCCceEEEcccC
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDA-------PS--------YAGVEHVGGNMF  250 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a-------~~--------~~ri~~~~gD~f  250 (273)
                      .+++.+. +.+..+|||||||+|.++..+++.+|..+++++|+ |..++.|       +.        .++|+++.+|-+
T Consensus       233 ~ml~~l~-l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~  311 (433)
T 1u2z_A          233 DVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSF  311 (433)
T ss_dssp             HHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCS
T ss_pred             HHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcc
Confidence            4555555 66788999999999999999999999888999998 6666655       32        258999988655


Q ss_pred             C-C--C---C-CCCEEEeccccc
Q 024046          251 E-S--V---P-EGDAILMKVGNF  266 (273)
Q Consensus       251 ~-~--~---p-~~D~~~l~~vLH  266 (273)
                      . +  +   . ..|+|++.+.++
T Consensus       312 ~~~~~~~~~~~~FDvIvvn~~l~  334 (433)
T 1u2z_A          312 VDNNRVAELIPQCDVILVNNFLF  334 (433)
T ss_dssp             TTCHHHHHHGGGCSEEEECCTTC
T ss_pred             ccccccccccCCCCEEEEeCccc
Confidence            3 2  2   1 249999877774

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.15  E-value=4e-06  Score=73.45  Aligned_cols=75  Identities=12%  Similarity=0.278  Sum_probs=59.7

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----CCCceEEEcccCC-CCCC--C
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE-SVPE--G  256 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~ri~~~~gD~f~-~~p~--~  256 (273)
                      ...+++..+ ..+..+|||||||+|.++..|+++  ..+++++|+ |.+++.++.    .++++++.+|+.+ ++|.  .
T Consensus        39 ~~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~f  115 (295)
T 3gru_A           39 VNKAVESAN-LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDF  115 (295)
T ss_dssp             HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCC
T ss_pred             HHHHHHhcC-CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCc
Confidence            345666665 667789999999999999999998  467899998 777776654    3789999999998 6775  3


Q ss_pred             CEEEec
Q 024046          257 DAILMK  262 (273)
Q Consensus       257 D~~~l~  262 (273)
                      |+++..
T Consensus       116 D~Iv~N  121 (295)
T 3gru_A          116 NKVVAN  121 (295)
T ss_dssp             SEEEEE
T ss_pred             cEEEEe
Confidence            887743

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=98.14  E-value=3.6e-06  Score=76.20  Aligned_cols=75  Identities=20%  Similarity=0.235  Sum_probs=58.6

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCC-------CCceEEEcccCC-CCCCC-CEEEecccc
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-DAILMKVGN  265 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~-------~ri~~~~gD~f~-~~p~~-D~~~l~~vL  265 (273)
                      ..+..+|||||||+|.++..++++. ..+++++|...+++.|++.       ++|+++.+|+.+ +.|+. |+|++..+.
T Consensus        61 ~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~  139 (376)
T 3r0q_C           61 HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG  139 (376)
T ss_dssp             TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred             cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence            4567899999999999999999984 3489999987666665532       679999999987 56654 999986666


Q ss_pred             cccCC
Q 024046          266 FENYQ  270 (273)
Q Consensus       266 Hd~~~  270 (273)
                      |....
T Consensus       140 ~~l~~  144 (376)
T 3r0q_C          140 YFLLR  144 (376)
T ss_dssp             TTBTT
T ss_pred             hcccc
Confidence            65543

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.13  E-value=7.5e-06  Score=70.80  Aligned_cols=77  Identities=18%  Similarity=0.283  Sum_probs=59.5

Q ss_pred             CCcceEEEecCCc---cHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCC---C--C---CC-
Q 024046          196 QNVERLVDVGGGF---GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES---V--P---EG-  256 (273)
Q Consensus       196 ~~~~~vvDVGGG~---G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~---~--p---~~-  256 (273)
                      .+..+|||||||.   |.....+.+.+|+.+++.+|. |.|++.|+..      .+++++.+|+.++   +  |   .. 
T Consensus        77 ~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~  156 (277)
T 3giw_A           77 AGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTL  156 (277)
T ss_dssp             SCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTC
T ss_pred             cCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhccccccccc
Confidence            3678999999997   444444555789999999998 9999988752      3799999999873   1  2   11 


Q ss_pred             C-----EEEecccccccCCCC
Q 024046          257 D-----AILMKVGNFENYQSH  272 (273)
Q Consensus       257 D-----~~~l~~vLHd~~~~~  272 (273)
                      |     ++++..+||..+|++
T Consensus       157 D~~~p~av~~~avLH~l~d~~  177 (277)
T 3giw_A          157 DLTRPVALTVIAIVHFVLDED  177 (277)
T ss_dssp             CTTSCCEEEEESCGGGSCGGG
T ss_pred             CcCCcchHHhhhhHhcCCchh
Confidence            4     688999999988753

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=98.13  E-value=2.9e-06  Score=71.74  Aligned_cols=68  Identities=15%  Similarity=0.119  Sum_probs=55.5

Q ss_pred             CcceEEEecCCccHHHHHHHHH----CCCCeEEEeec-hHHHHhCCC-CCCceEEEcccCCC--CC---C--CCEEEecc
Q 024046          197 NVERLVDVGGGFGVTLSMITSK----YPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFES--VP---E--GDAILMKV  263 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~----~P~l~~~~~Dl-p~v~~~a~~-~~ri~~~~gD~f~~--~p---~--~D~~~l~~  263 (273)
                      +..+|||||||+|..+..+++.    +|+.+++.+|+ |.+++.|+. .++|+++.||..+.  +|   .  .|++++..
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~  160 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN  160 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence            3579999999999999999998    79999999998 887777764 37899999999873  22   3  39988754


Q ss_pred             c
Q 024046          264 G  264 (273)
Q Consensus       264 v  264 (273)
                      .
T Consensus       161 ~  161 (236)
T 2bm8_A          161 A  161 (236)
T ss_dssp             S
T ss_pred             c
Confidence            3

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=98.13  E-value=3.8e-06  Score=70.11  Aligned_cols=73  Identities=19%  Similarity=0.273  Sum_probs=57.5

Q ss_pred             CCCcceEEEecCC-ccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEccc--CCCCCCC--CEEEecc
Q 024046          195 FQNVERLVDVGGG-FGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNM--FESVPEG--DAILMKV  263 (273)
Q Consensus       195 ~~~~~~vvDVGGG-~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~--f~~~p~~--D~~~l~~  263 (273)
                      .++..+||||||| +|.++..+++.+ ..+++++|+ |.+++.|+.+     -+++++.+|+  +.+++.+  |+|++.-
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np  131 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP  131 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence            4567899999999 999999999997 778999998 8888877642     2799999996  4466643  9999875


Q ss_pred             ccccc
Q 024046          264 GNFEN  268 (273)
Q Consensus       264 vLHd~  268 (273)
                      ..|..
T Consensus       132 p~~~~  136 (230)
T 3evz_A          132 PYYDK  136 (230)
T ss_dssp             CCC--
T ss_pred             CCcCC
Confidence            55443

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.13  E-value=3.3e-06  Score=70.52  Aligned_cols=75  Identities=17%  Similarity=0.240  Sum_probs=61.4

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCC------CCeEEEeec-hHHHHhCCC-----------CCCceEEEcccCCCCCC-
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYP------QIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFESVPE-  255 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P------~l~~~~~Dl-p~v~~~a~~-----------~~ri~~~~gD~f~~~p~-  255 (273)
                      ..+..+|||||||+|.++..+++..+      ..+++++|. |.+++.|++           .++++++.+|...++|. 
T Consensus        82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  161 (227)
T 1r18_A           82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN  161 (227)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred             CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence            45667999999999999999999776      368999998 887777654           25899999999987664 


Q ss_pred             C--CEEEecccccccC
Q 024046          256 G--DAILMKVGNFENY  269 (273)
Q Consensus       256 ~--D~~~l~~vLHd~~  269 (273)
                      +  |+|++...+|...
T Consensus       162 ~~fD~I~~~~~~~~~~  177 (227)
T 1r18_A          162 APYNAIHVGAAAPDTP  177 (227)
T ss_dssp             CSEEEEEECSCBSSCC
T ss_pred             CCccEEEECCchHHHH
Confidence            3  9999998887654

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=98.13  E-value=6.1e-06  Score=68.80  Aligned_cols=69  Identities=16%  Similarity=0.224  Sum_probs=53.6

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHh----CCCCCCceEEEcccCCC-----CCCC-CEEEec
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQD----APSYAGVEHVGGNMFES-----VPEG-DAILMK  262 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~----a~~~~ri~~~~gD~f~~-----~p~~-D~~~l~  262 (273)
                      +.+..+|||+|||+|.++..+++++ |..+++++|. |.+++.    ++..++++++.+|+..+     .+.. |++++.
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~  150 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED  150 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence            5567899999999999999999985 6788999998 654443    44447899999999872     2333 998864


Q ss_pred             c
Q 024046          263 V  263 (273)
Q Consensus       263 ~  263 (273)
                      .
T Consensus       151 ~  151 (227)
T 1g8a_A          151 V  151 (227)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.11  E-value=5.1e-06  Score=70.98  Aligned_cols=78  Identities=18%  Similarity=0.264  Sum_probs=60.4

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC--CCceEEEcccCC-CCCC--CCEE
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFE-SVPE--GDAI  259 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~--~ri~~~~gD~f~-~~p~--~D~~  259 (273)
                      ..+++..+ .....+|||||||+|.++..++++ +..+++++|+ +.+++.++..  ++++++.+|+.+ +++.  ++..
T Consensus        21 ~~iv~~~~-~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~   98 (249)
T 3ftd_A           21 KKIAEELN-IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKELK   98 (249)
T ss_dssp             HHHHHHTT-CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSEE
T ss_pred             HHHHHhcC-CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCcE
Confidence            45666665 666789999999999999999988 5678999998 7888877654  679999999998 5664  2555


Q ss_pred             Eecccc
Q 024046          260 LMKVGN  265 (273)
Q Consensus       260 ~l~~vL  265 (273)
                      ++.|.-
T Consensus        99 vv~NlP  104 (249)
T 3ftd_A           99 VVGNLP  104 (249)
T ss_dssp             EEEECC
T ss_pred             EEEECc
Confidence            555543

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.11  E-value=9.2e-07  Score=73.64  Aligned_cols=69  Identities=13%  Similarity=0.149  Sum_probs=55.6

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCC---CC-----CC-C
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---VP-----EG-D  257 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~---~p-----~~-D  257 (273)
                      .+..+|||||||+|..+..+++.+| ..+++++|. |..++.|+..       ++|+++.+|..+.   .+     .. |
T Consensus        63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  142 (225)
T 3tr6_A           63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD  142 (225)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred             hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence            3567999999999999999999998 889999998 7777776542       6799999999762   21     33 9


Q ss_pred             EEEeccc
Q 024046          258 AILMKVG  264 (273)
Q Consensus       258 ~~~l~~v  264 (273)
                      ++++...
T Consensus       143 ~v~~~~~  149 (225)
T 3tr6_A          143 LIYIDAD  149 (225)
T ss_dssp             EEEECSC
T ss_pred             EEEECCC
Confidence            9986543

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.10  E-value=1.2e-06  Score=75.03  Aligned_cols=75  Identities=11%  Similarity=-0.009  Sum_probs=63.9

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCCCCCC--CCEEEecccccc
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPE--GDAILMKVGNFE  267 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~~~p~--~D~~~l~~vLHd  267 (273)
                      ..+.+|||||||.|-++..+...+|..+.+.+|+ +..++.++.+     .+.++...|+..+.|.  +|++++.-++|+
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~  210 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC  210 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence            4588999999999999999999999999999998 7778776653     5589999999996554  499999999987


Q ss_pred             cCC
Q 024046          268 NYQ  270 (273)
Q Consensus       268 ~~~  270 (273)
                      -.+
T Consensus       211 Le~  213 (281)
T 3lcv_B          211 LET  213 (281)
T ss_dssp             HHH
T ss_pred             hhh
Confidence            543

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.09  E-value=1.9e-06  Score=78.70  Aligned_cols=81  Identities=16%  Similarity=0.147  Sum_probs=60.4

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCCCCceEEEcccCC-------CCC-C
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-------SVP-E  255 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gD~f~-------~~p-~  255 (273)
                      +..+++.+. ..+..+|||||||+|.++..++++.  .+++++|. +.+++.|++. .+.... ++|.       +++ .
T Consensus        96 ~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~g--~~v~gvD~s~~~~~~a~~~-~~~~~~-~~~~~~~~~~l~~~~~  170 (416)
T 4e2x_A           96 ARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEAG--VRHLGFEPSSGVAAKAREK-GIRVRT-DFFEKATADDVRRTEG  170 (416)
T ss_dssp             HHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHTT--CEEEEECCCHHHHHHHHTT-TCCEEC-SCCSHHHHHHHHHHHC
T ss_pred             HHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHcC--CcEEEECCCHHHHHHHHHc-CCCcce-eeechhhHhhcccCCC
Confidence            455667666 6677899999999999999999974  47999998 7888888754 344333 2222       233 2


Q ss_pred             C-CEEEecccccccCC
Q 024046          256 G-DAILMKVGNFENYQ  270 (273)
Q Consensus       256 ~-D~~~l~~vLHd~~~  270 (273)
                      . |+|++.++||+++|
T Consensus       171 ~fD~I~~~~vl~h~~d  186 (416)
T 4e2x_A          171 PANVIYAANTLCHIPY  186 (416)
T ss_dssp             CEEEEEEESCGGGCTT
T ss_pred             CEEEEEECChHHhcCC
Confidence            3 99999999999875

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=98.09  E-value=2.7e-06  Score=71.34  Aligned_cols=68  Identities=13%  Similarity=0.142  Sum_probs=54.5

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hH----HHHhCCCCCCceEEEcccCCC--CC--C-C-CEEEec
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PH----VVQDAPSYAGVEHVGGNMFES--VP--E-G-DAILMK  262 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~----v~~~a~~~~ri~~~~gD~f~~--~p--~-~-D~~~l~  262 (273)
                      +.+..+|||||||+|.++..+++.+ |..+++++|+ |.    +++.++..++++++.+|+.++  +|  . . |++++.
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~  154 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD  154 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence            5567899999999999999999997 7889999998 54    344555458899999999873  33  2 3 999874

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.09  E-value=2.7e-06  Score=73.97  Aligned_cols=68  Identities=15%  Similarity=0.255  Sum_probs=55.2

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCC--CeEEEeec-hHHHHhCCCC--CCceEEEcccCC-CCC
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ--IKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFE-SVP  254 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~--l~~~~~Dl-p~v~~~a~~~--~ri~~~~gD~f~-~~p  254 (273)
                      ..+++..+ .....+|||||||+|.++..|+++.+.  .+++++|+ |.+++.+++.  ++++++.+|+++ +++
T Consensus        32 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~  105 (279)
T 3uzu_A           32 DAIVAAIR-PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFG  105 (279)
T ss_dssp             HHHHHHHC-CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGG
T ss_pred             HHHHHhcC-CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChh
Confidence            34556555 667789999999999999999999765  56899998 8888877653  789999999988 554

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.09  E-value=4.4e-06  Score=68.15  Aligned_cols=61  Identities=13%  Similarity=0.209  Sum_probs=51.1

Q ss_pred             eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCC-CCCCC--CEEEec
Q 024046          200 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG--DAILMK  262 (273)
Q Consensus       200 ~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~-~~p~~--D~~~l~  262 (273)
                      +|||||||+|.++..+++.  ..+++++|. |.+++.++..     .+++++.+|+.+ +++.+  |+|++.
T Consensus        32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~  101 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI  101 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE
T ss_pred             CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE
Confidence            9999999999999999987  468999998 7888877643     389999999988 55643  999984

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=98.08  E-value=6.6e-06  Score=70.75  Aligned_cols=75  Identities=13%  Similarity=0.254  Sum_probs=60.3

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhCCC---------CCCceEEEcccCC-CC
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPS---------YAGVEHVGGNMFE-SV  253 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~~~Dl-p~v~~~a~~---------~~ri~~~~gD~f~-~~  253 (273)
                      ..++..++ .....+|||||||+|.++..+++. .|..+++++|. |.+++.|+.         .++++++.+|+.+ ++
T Consensus        89 ~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~  167 (280)
T 1i9g_A           89 AQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL  167 (280)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC
T ss_pred             HHHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC
Confidence            34566666 667789999999999999999996 68899999998 887776653         2579999999987 45


Q ss_pred             CC-C-CEEEe
Q 024046          254 PE-G-DAILM  261 (273)
Q Consensus       254 p~-~-D~~~l  261 (273)
                      +. . |+|++
T Consensus       168 ~~~~~D~v~~  177 (280)
T 1i9g_A          168 PDGSVDRAVL  177 (280)
T ss_dssp             CTTCEEEEEE
T ss_pred             CCCceeEEEE
Confidence            54 3 99987

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=98.07  E-value=7.2e-06  Score=72.80  Aligned_cols=76  Identities=14%  Similarity=0.238  Sum_probs=58.6

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhCCC-----------------CCCceEEE
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPS-----------------YAGVEHVG  246 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~~~Dl-p~v~~~a~~-----------------~~ri~~~~  246 (273)
                      ..++..++ ..+..+|||||||+|.++..+++. .|+.+++++|+ |..++.|++                 .++|+++.
T Consensus        95 ~~~l~~l~-~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~  173 (336)
T 2b25_A           95 NMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH  173 (336)
T ss_dssp             HHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred             HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence            34555555 667789999999999999999998 58899999998 777776653                 15899999


Q ss_pred             cccCCC---CCCC--CEEEec
Q 024046          247 GNMFES---VPEG--DAILMK  262 (273)
Q Consensus       247 gD~f~~---~p~~--D~~~l~  262 (273)
                      +|+.+.   ++.+  |+|++.
T Consensus       174 ~d~~~~~~~~~~~~fD~V~~~  194 (336)
T 2b25_A          174 KDISGATEDIKSLTFDAVALD  194 (336)
T ss_dssp             SCTTCCC-------EEEEEEC
T ss_pred             CChHHcccccCCCCeeEEEEC
Confidence            999873   4443  999873

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.06  E-value=4.4e-06  Score=73.36  Aligned_cols=76  Identities=21%  Similarity=0.262  Sum_probs=60.1

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCC-C--CC-
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-S--VP-  254 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~-~--~p-  254 (273)
                      ...+++.+. ..+..+|||+|||+|.++..+++++|+.+++++|. |.+++.|+++     +|++++.+||.. +  ++ 
T Consensus        15 l~e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~   93 (301)
T 1m6y_A           15 VREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT   93 (301)
T ss_dssp             HHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred             HHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHh
Confidence            345556665 56678999999999999999999999999999998 8888877542     689999999865 2  21 


Q ss_pred             ---C-CCEEEe
Q 024046          255 ---E-GDAILM  261 (273)
Q Consensus       255 ---~-~D~~~l  261 (273)
                         . .|.+++
T Consensus        94 ~g~~~~D~Vl~  104 (301)
T 1m6y_A           94 LGIEKVDGILM  104 (301)
T ss_dssp             TTCSCEEEEEE
T ss_pred             cCCCCCCEEEE
Confidence               2 288776

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=98.06  E-value=4.8e-06  Score=75.26  Aligned_cols=68  Identities=12%  Similarity=0.066  Sum_probs=57.9

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC-CCCC-C-CEEEec
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPE-G-DAILMK  262 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~p~-~-D~~~l~  262 (273)
                      +.+..+|||+|||+|.+++.+++..+..+++++|+ |.+++.|+.+       ++|+++.+|+.+ +.+. . |+|++.
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~n  293 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISN  293 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEE
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEEC
Confidence            56778999999999999999999998778999998 8888877653       589999999998 5553 3 999884

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=98.05  E-value=2.3e-06  Score=71.39  Aligned_cols=69  Identities=10%  Similarity=0.145  Sum_probs=55.6

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCC---CC-----CC-
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---VP-----EG-  256 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~---~p-----~~-  256 (273)
                      ..+..+|||||||+|..+..+++.+| +.+++++|. |..++.|++.       ++|+++.+|+++.   ++     .. 
T Consensus        67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~  146 (229)
T 2avd_A           67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF  146 (229)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred             hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence            44668999999999999999999988 789999998 8877776542       6899999998762   22     33 


Q ss_pred             CEEEecc
Q 024046          257 DAILMKV  263 (273)
Q Consensus       257 D~~~l~~  263 (273)
                      |++++..
T Consensus       147 D~v~~d~  153 (229)
T 2avd_A          147 DVAVVDA  153 (229)
T ss_dssp             EEEEECS
T ss_pred             cEEEECC
Confidence            9988753

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=98.05  E-value=2.2e-06  Score=73.28  Aligned_cols=69  Identities=20%  Similarity=0.316  Sum_probs=54.6

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC---C--CceEEEcccCCCCCC-C-CEEEecccc
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---A--GVEHVGGNMFESVPE-G-DAILMKVGN  265 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~---~--ri~~~~gD~f~~~p~-~-D~~~l~~vL  265 (273)
                      ..+..+|||||||+|.++..+++..+  +++++|+ |..++.++.+   .  .++++.+|+..++|. . |++++....
T Consensus       118 ~~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~  194 (254)
T 2nxc_A          118 LRPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYA  194 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCH
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcH
Confidence            34668999999999999999999877  8999998 8877777642   1  189999999876654 3 999875443

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=98.05  E-value=7e-06  Score=68.34  Aligned_cols=74  Identities=18%  Similarity=0.199  Sum_probs=60.5

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHC-----CCCeEEEeec-hHHHHhCCC-----------CCCceEEEcccCCCC----
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKY-----PQIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFESV----  253 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~-----P~l~~~~~Dl-p~v~~~a~~-----------~~ri~~~~gD~f~~~----  253 (273)
                      ..+..+|||||||+|.++..+++..     |+.+++++|. |..++.|+.           .++++++.+|..+..    
T Consensus        78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  157 (227)
T 2pbf_A           78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK  157 (227)
T ss_dssp             SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence            4567899999999999999999987     6789999998 777776654           247999999998854    


Q ss_pred             C--CC-CEEEeccccccc
Q 024046          254 P--EG-DAILMKVGNFEN  268 (273)
Q Consensus       254 p--~~-D~~~l~~vLHd~  268 (273)
                      +  .. |+|++...+|..
T Consensus       158 ~~~~~fD~I~~~~~~~~~  175 (227)
T 2pbf_A          158 KELGLFDAIHVGASASEL  175 (227)
T ss_dssp             HHHCCEEEEEECSBBSSC
T ss_pred             ccCCCcCEEEECCchHHH
Confidence            3  23 999999888754

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.04  E-value=6.9e-06  Score=71.05  Aligned_cols=78  Identities=14%  Similarity=0.085  Sum_probs=57.1

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC---CCCceEEEcccCC-CCCC--CCE
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS---YAGVEHVGGNMFE-SVPE--GDA  258 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~~ri~~~~gD~f~-~~p~--~D~  258 (273)
                      ..+++..+ .... +|||||||+|.++..|+++.  .+++++|+ +.+++.+++   .++++++.||+++ +++.  ...
T Consensus        37 ~~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~~  112 (271)
T 3fut_A           37 RRIVEAAR-PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQGS  112 (271)
T ss_dssp             HHHHHHHC-CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTTE
T ss_pred             HHHHHhcC-CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCcc
Confidence            34556555 5556 99999999999999999986  56899998 777776653   2689999999998 5653  223


Q ss_pred             EEecccccc
Q 024046          259 ILMKVGNFE  267 (273)
Q Consensus       259 ~~l~~vLHd  267 (273)
                      .++.|.-++
T Consensus       113 ~iv~NlPy~  121 (271)
T 3fut_A          113 LLVANLPYH  121 (271)
T ss_dssp             EEEEEECSS
T ss_pred             EEEecCccc
Confidence            344554333

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=98.04  E-value=4.1e-06  Score=72.55  Aligned_cols=67  Identities=19%  Similarity=0.071  Sum_probs=55.3

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCCC-C-CEEEec
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE-G-DAILMK  262 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p~-~-D~~~l~  262 (273)
                      .++..+|||+|||+|.++..+++..+. +++++|+ |.+++.|+.+       ++++++.+|.++..+. . |++++.
T Consensus       123 ~~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~  199 (278)
T 2frn_A          123 AKPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMG  199 (278)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEEC
T ss_pred             CCCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEEC
Confidence            345789999999999999999999887 8999998 8888877642       5699999999984433 3 998874

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=98.04  E-value=1.4e-06  Score=68.90  Aligned_cols=68  Identities=19%  Similarity=0.059  Sum_probs=56.0

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC----C-CceEEEcccCCCCC-------CCCEEEecc
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----A-GVEHVGGNMFESVP-------EGDAILMKV  263 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~----~-ri~~~~gD~f~~~p-------~~D~~~l~~  263 (273)
                      ...+|||+|||+|.++..++++.|+  ++++|. |.+++.|+..    + +++++.+|+.+..+       ..|++++..
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~  118 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP  118 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence            5679999999999999999999887  999998 8888877653    2 79999999987322       239999987


Q ss_pred             ccc
Q 024046          264 GNF  266 (273)
Q Consensus       264 vLH  266 (273)
                      .+|
T Consensus       119 ~~~  121 (171)
T 1ws6_A          119 PYA  121 (171)
T ss_dssp             CTT
T ss_pred             CCc
Confidence            776

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=98.03  E-value=2.5e-06  Score=71.95  Aligned_cols=57  Identities=19%  Similarity=0.244  Sum_probs=48.6

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE  251 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~  251 (273)
                      ..+..+|||||||+|..+..+++.+| ..+++++|. |.+++.|+..       ++|+++.+|..+
T Consensus        58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~  123 (239)
T 2hnk_A           58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALE  123 (239)
T ss_dssp             HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred             hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHH
Confidence            34568999999999999999999998 689999998 8888777642       569999999876

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.03  E-value=2e-06  Score=73.14  Aligned_cols=72  Identities=13%  Similarity=0.139  Sum_probs=57.2

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC----C------------------------------
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----A------------------------------  240 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~----~------------------------------  240 (273)
                      .+..+|||||||+|.++..+++..+ .+++++|. |.+++.+++.    +                              
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  133 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR  133 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence            4568999999999999999998877 57899998 7777766431    2                              


Q ss_pred             -Cc-eEEEcccCCC--CCC---C--CEEEeccccccc
Q 024046          241 -GV-EHVGGNMFES--VPE---G--DAILMKVGNFEN  268 (273)
Q Consensus       241 -ri-~~~~gD~f~~--~p~---~--D~~~l~~vLHd~  268 (273)
                       +| +++.+|+.+.  .+.   +  |+|++..+||..
T Consensus       134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~  170 (265)
T 2i62_A          134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAA  170 (265)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHH
T ss_pred             hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhh
Confidence             27 9999999873  233   3  999999999943

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=98.02  E-value=9.5e-06  Score=66.47  Aligned_cols=72  Identities=14%  Similarity=0.051  Sum_probs=57.8

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC----C-CceEEEcccCCCCCC-CCEEEeccccccc
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----A-GVEHVGGNMFESVPE-GDAILMKVGNFEN  268 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~----~-ri~~~~gD~f~~~p~-~D~~~l~~vLHd~  268 (273)
                      ....+|||+|||+|.++..+++..+ .+++++|. |.+++.++..    + +++++.+|+.+ +|. .|++++.-..|.+
T Consensus        48 ~~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~  125 (207)
T 1wy7_A           48 IEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE-FNSRVDIVIMNPPFGSQ  125 (207)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGG-CCCCCSEEEECCCCSSS
T ss_pred             CCcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHH-cCCCCCEEEEcCCCccc
Confidence            3567999999999999999998844 37999998 8888776642    2 79999999987 454 4999998777666


Q ss_pred             C
Q 024046          269 Y  269 (273)
Q Consensus       269 ~  269 (273)
                      .
T Consensus       126 ~  126 (207)
T 1wy7_A          126 R  126 (207)
T ss_dssp             S
T ss_pred             c
Confidence            4

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.02  E-value=4.8e-06  Score=73.02  Aligned_cols=73  Identities=15%  Similarity=0.337  Sum_probs=53.6

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC------CCCceEEEcccCC-CCCCCC
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE-SVPEGD  257 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gD~f~-~~p~~D  257 (273)
                      ..+++..+ ..+..+|||||||+|.++..++++  ..+++++|+ |.+++.++.      .++++++.+|+.+ +.+..|
T Consensus        32 ~~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~D  108 (299)
T 2h1r_A           32 DKIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKFD  108 (299)
T ss_dssp             HHHHHHHC-CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCCS
T ss_pred             HHHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccCC
Confidence            44555555 667789999999999999999987  357899998 777776653      2689999999987 455559


Q ss_pred             EEEe
Q 024046          258 AILM  261 (273)
Q Consensus       258 ~~~l  261 (273)
                      +|++
T Consensus       109 ~Vv~  112 (299)
T 2h1r_A          109 VCTA  112 (299)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8876

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=98.02  E-value=4.2e-06  Score=68.90  Aligned_cols=69  Identities=14%  Similarity=0.077  Sum_probs=54.3

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCC--CCCC-C-CEEEecccc
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE--SVPE-G-DAILMKVGN  265 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~--~~p~-~-D~~~l~~vL  265 (273)
                      ...+|||+|||+|.++..++++.. .+++++|+ |.+++.|+.+      ++|+++.+|+.+  +.+. . |+|++...+
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~  132 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF  132 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence            347999999999999999888764 37999998 8888877642      589999999987  3333 3 999986554


Q ss_pred             c
Q 024046          266 F  266 (273)
Q Consensus       266 H  266 (273)
                      |
T Consensus       133 ~  133 (202)
T 2fpo_A          133 R  133 (202)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=98.02  E-value=3.3e-06  Score=69.64  Aligned_cols=67  Identities=19%  Similarity=0.208  Sum_probs=54.7

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCC--C-CCEEEec
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVP--E-GDAILMK  262 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p--~-~D~~~l~  262 (273)
                      .+..+|||||||+|..+..+++.+| +.+++++|. |.+++.|++.       ++|+++.+|..+..|  . .|++++.
T Consensus        55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~  133 (210)
T 3c3p_A           55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMD  133 (210)
T ss_dssp             HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEE
T ss_pred             hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEc
Confidence            3567999999999999999999998 889999998 8888877642       579999999976322  3 4888765

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.02  E-value=4.4e-06  Score=74.50  Aligned_cols=69  Identities=20%  Similarity=0.268  Sum_probs=56.8

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcccCC---CCCC-C-CE
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFE---SVPE-G-DA  258 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------~~ri~~~~gD~f~---~~p~-~-D~  258 (273)
                      .+...+|||||||+|..+..++++.|..+++++|+ |.+++.|++          .+||+++.+|.++   ..+. . |+
T Consensus       118 ~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDl  197 (334)
T 1xj5_A          118 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA  197 (334)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred             CCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccE
Confidence            34668999999999999999999989999999998 888887653          2689999999876   2443 3 99


Q ss_pred             EEecc
Q 024046          259 ILMKV  263 (273)
Q Consensus       259 ~~l~~  263 (273)
                      |++..
T Consensus       198 Ii~d~  202 (334)
T 1xj5_A          198 VIVDS  202 (334)
T ss_dssp             EEECC
T ss_pred             EEECC
Confidence            99743

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.00  E-value=1.5e-05  Score=64.51  Aligned_cols=74  Identities=19%  Similarity=0.250  Sum_probs=55.2

Q ss_pred             HHhhcccCCCcceEEEecCCccHHHHHHHHHCCC---------CeEEEeechHHHHhCCCCCCceEE-EcccCCC-----
Q 024046          188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ---------IKAVNFDLPHVVQDAPSYAGVEHV-GGNMFES-----  252 (273)
Q Consensus       188 il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~---------l~~~~~Dlp~v~~~a~~~~ri~~~-~gD~f~~-----  252 (273)
                      +...+..+.+..+|||||||+|.++..+++++|.         .+++++|+...    ...++++++ .+|+...     
T Consensus        13 l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~----~~~~~~~~~~~~d~~~~~~~~~   88 (196)
T 2nyu_A           13 VNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI----FPLEGATFLCPADVTDPRTSQR   88 (196)
T ss_dssp             HHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC----CCCTTCEEECSCCTTSHHHHHH
T ss_pred             HHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc----ccCCCCeEEEeccCCCHHHHHH
Confidence            3444443566789999999999999999999875         78999998542    123679999 9998762     


Q ss_pred             ----CCC-C-CEEEecccc
Q 024046          253 ----VPE-G-DAILMKVGN  265 (273)
Q Consensus       253 ----~p~-~-D~~~l~~vL  265 (273)
                          ++. . |+|++...+
T Consensus        89 ~~~~~~~~~fD~V~~~~~~  107 (196)
T 2nyu_A           89 ILEVLPGRRADVILSDMAP  107 (196)
T ss_dssp             HHHHSGGGCEEEEEECCCC
T ss_pred             HHHhcCCCCCcEEEeCCCC
Confidence                233 3 999975433

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.00  E-value=1.7e-06  Score=82.51  Aligned_cols=74  Identities=16%  Similarity=0.085  Sum_probs=60.0

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCC---CCCC--CCEEEecc
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE---SVPE--GDAILMKV  263 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~---~~p~--~D~~~l~~  263 (273)
                      ..+.+|||||||.|.++..+++.  ..+++++|+ +..++.|+.+      -.|++..+|..+   +.+.  .|+|++..
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e  142 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS  142 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred             CCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence            45679999999999999999998  678999998 8888877642      258999998865   3443  39999999


Q ss_pred             cccccCCC
Q 024046          264 GNFENYQS  271 (273)
Q Consensus       264 vLHd~~~~  271 (273)
                      +||+.+|+
T Consensus       143 ~~ehv~~~  150 (569)
T 4azs_A          143 VFHHIVHL  150 (569)
T ss_dssp             CHHHHHHH
T ss_pred             chhcCCCH
Confidence            99987653

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.00  E-value=4.3e-06  Score=73.53  Aligned_cols=70  Identities=20%  Similarity=0.293  Sum_probs=57.1

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcccCC--CCC-CC-CEE
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFE--SVP-EG-DAI  259 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------~~ri~~~~gD~f~--~~p-~~-D~~  259 (273)
                      ..+..+|||||||+|..+..++++.|..+++++|+ |.+++.|++          .+|++++.+|.++  +.+ .. |+|
T Consensus        93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~I  172 (304)
T 2o07_A           93 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI  172 (304)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred             CCCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEE
Confidence            34668999999999999999999989899999998 888876653          3789999999976  233 33 999


Q ss_pred             Eeccc
Q 024046          260 LMKVG  264 (273)
Q Consensus       260 ~l~~v  264 (273)
                      ++...
T Consensus       173 i~d~~  177 (304)
T 2o07_A          173 ITDSS  177 (304)
T ss_dssp             EEECC
T ss_pred             EECCC
Confidence            98543

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=97.99  E-value=1.4e-05  Score=67.14  Aligned_cols=72  Identities=17%  Similarity=0.272  Sum_probs=58.2

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCC-CC-C
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESV-PE-G  256 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~-p~-~  256 (273)
                      .++...+ .....+|||+|||+|.++..++++  ..+++++|. |..++.|+..       ++++++.+|+.+.. +. .
T Consensus        82 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  158 (248)
T 2yvl_A           82 YIALKLN-LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGI  158 (248)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTC
T ss_pred             HHHHhcC-CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCc
Confidence            4455555 667789999999999999999999  678999997 7777776542       68999999999865 54 3


Q ss_pred             -CEEEe
Q 024046          257 -DAILM  261 (273)
Q Consensus       257 -D~~~l  261 (273)
                       |++++
T Consensus       159 ~D~v~~  164 (248)
T 2yvl_A          159 FHAAFV  164 (248)
T ss_dssp             BSEEEE
T ss_pred             ccEEEE
Confidence             99987

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=97.99  E-value=4.2e-06  Score=70.12  Aligned_cols=67  Identities=9%  Similarity=0.101  Sum_probs=53.9

Q ss_pred             cceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCCC--------CCceEEEcccCC---CCCC-C-CEEEec
Q 024046          198 VERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFE---SVPE-G-DAILMK  262 (273)
Q Consensus       198 ~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~~--------~ri~~~~gD~f~---~~p~-~-D~~~l~  262 (273)
                      ..+|||||||+|..+..+++++| +.+++.+|+ |..++.|++.        +||+++.||..+   .++. . |+|++.
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d  136 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ  136 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence            34999999999999999999986 789999998 8777776542        489999999876   2433 3 999875


Q ss_pred             cc
Q 024046          263 VG  264 (273)
Q Consensus       263 ~v  264 (273)
                      ..
T Consensus       137 ~~  138 (221)
T 3dr5_A          137 VS  138 (221)
T ss_dssp             CC
T ss_pred             Cc
Confidence            43

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=97.98  E-value=1.3e-05  Score=65.53  Aligned_cols=62  Identities=21%  Similarity=0.415  Sum_probs=49.2

Q ss_pred             hHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCCCCceEEEcccCC
Q 024046          184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFE  251 (273)
Q Consensus       184 ~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~~ri~~~~gD~f~  251 (273)
                      ....+.+.+..+++..+|||||||+|.++..++++  ..+++++|+-..    ...++++++.+|+.+
T Consensus        12 KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~----~~~~~v~~~~~D~~~   73 (191)
T 3dou_A           12 KLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM----EEIAGVRFIRCDIFK   73 (191)
T ss_dssp             HHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC----CCCTTCEEEECCTTS
T ss_pred             HHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc----ccCCCeEEEEccccC
Confidence            34456666664567789999999999999999998  678999998432    234789999999987

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=97.98  E-value=6.9e-06  Score=70.94  Aligned_cols=69  Identities=13%  Similarity=0.072  Sum_probs=57.2

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCC-CCCC-CEEEecc
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES-VPEG-DAILMKV  263 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~-~p~~-D~~~l~~  263 (273)
                      +.+..+|||+|||+|.++..++++.|..+++++|+ |.+++.|+.+      ++++++.+|.++. .+.. |++++..
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~  194 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGY  194 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECC
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECC
Confidence            55678999999999999999999999889999998 8888877642      5789999999875 2223 9988754

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=97.97  E-value=5.3e-06  Score=72.64  Aligned_cols=67  Identities=25%  Similarity=0.246  Sum_probs=54.8

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcccCCC--CC-CC-CEEE
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFES--VP-EG-DAIL  260 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------~~ri~~~~gD~f~~--~p-~~-D~~~  260 (273)
                      +...+|||||||+|..+..+++..|..+++++|+ |.+++.|++          .+|++++.+|.++.  .+ .. |+|+
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  168 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  168 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence            3558999999999999999999988899999998 888876643          36899999998763  22 33 9998


Q ss_pred             ec
Q 024046          261 MK  262 (273)
Q Consensus       261 l~  262 (273)
                      +.
T Consensus       169 ~d  170 (296)
T 1inl_A          169 ID  170 (296)
T ss_dssp             EE
T ss_pred             Ec
Confidence            73

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=97.97  E-value=1.1e-05  Score=73.44  Aligned_cols=72  Identities=15%  Similarity=0.163  Sum_probs=56.8

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhCCCCCCceEEEcccCCCCCC-C-CEEEec
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVPE-G-DAILMK  262 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gD~f~~~p~-~-D~~~l~  262 (273)
                      .+++.+. .....+|||+|||+|.++..+++++ +..+++++|+ |.+++.|   ++++++.+|++...+. . |+|+..
T Consensus        30 ~~~~~~~-~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~Ii~N  105 (421)
T 2ih2_A           30 FMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILGN  105 (421)
T ss_dssp             HHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEEC
T ss_pred             HHHHhhc-cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCEEEEC
Confidence            3444444 3345699999999999999999988 7789999998 7777666   6899999999985443 3 999883

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=97.97  E-value=4.4e-06  Score=73.74  Aligned_cols=72  Identities=24%  Similarity=0.225  Sum_probs=58.3

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-----------CCCceEEEcccCCC--C-CCC-CEE
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFES--V-PEG-DAI  259 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----------~~ri~~~~gD~f~~--~-p~~-D~~  259 (273)
                      +...+|||||||+|..+..+++..|..+++++|+ |.+++.|++           .+|++++.+|..+.  . +.. |+|
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence            4568999999999999999999888899999998 888876642           36899999999862  2 333 999


Q ss_pred             Eecccccc
Q 024046          260 LMKVGNFE  267 (273)
Q Consensus       260 ~l~~vLHd  267 (273)
                      ++....|.
T Consensus       156 i~d~~~~~  163 (314)
T 1uir_A          156 IIDLTDPV  163 (314)
T ss_dssp             EEECCCCB
T ss_pred             EECCCCcc
Confidence            98765543

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=97.96  E-value=8.3e-06  Score=71.62  Aligned_cols=71  Identities=11%  Similarity=0.033  Sum_probs=53.4

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC----C--------CceEEEcccCC---------CCC
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----A--------GVEHVGGNMFE---------SVP  254 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~----~--------ri~~~~gD~f~---------~~p  254 (273)
                      ...+|||||||+|..+..+++.. ..+++++|+ +.+++.|+.+    .        ++++..+|+..         ++|
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~  126 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY  126 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred             CCCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence            46799999999998777766643 457999998 8889888753    1        26788888722         245


Q ss_pred             CC--CEEEeccccccc
Q 024046          255 EG--DAILMKVGNFEN  268 (273)
Q Consensus       255 ~~--D~~~l~~vLHd~  268 (273)
                      .+  |+|++..+||..
T Consensus       127 ~~~FD~V~~~~~lhy~  142 (302)
T 2vdw_A          127 FGKFNIIDWQFAIHYS  142 (302)
T ss_dssp             SSCEEEEEEESCGGGT
T ss_pred             CCCeeEEEECchHHHh
Confidence            43  999999999974

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=97.96  E-value=1.6e-06  Score=73.68  Aligned_cols=69  Identities=13%  Similarity=0.269  Sum_probs=55.2

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCC---C-----CCC-C
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---V-----PEG-D  257 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~---~-----p~~-D  257 (273)
                      .+..+|||||||+|..+..+++..| +.+++.+|+ |..++.|++.       ++|+++.||..+.   .     +.. |
T Consensus        59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD  138 (242)
T 3r3h_A           59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD  138 (242)
T ss_dssp             HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred             cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence            4568999999999999999999997 789999998 7766666542       6899999999762   2     233 9


Q ss_pred             EEEeccc
Q 024046          258 AILMKVG  264 (273)
Q Consensus       258 ~~~l~~v  264 (273)
                      +|++...
T Consensus       139 ~V~~d~~  145 (242)
T 3r3h_A          139 FIFIDAD  145 (242)
T ss_dssp             EEEEESC
T ss_pred             EEEEcCC
Confidence            9987644

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=97.96  E-value=4.5e-06  Score=74.01  Aligned_cols=68  Identities=13%  Similarity=0.129  Sum_probs=55.7

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcccCCCC---CCC-CEEE
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFESV---PEG-DAIL  260 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------~~ri~~~~gD~f~~~---p~~-D~~~  260 (273)
                      +...+|||||||+|..+..+++..|..+++++|+ |.+++.|++          .+|++++.+|.++..   +.. |+|+
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi  194 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  194 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence            4568999999999999999999888999999998 888876643          268999999997632   333 9998


Q ss_pred             ecc
Q 024046          261 MKV  263 (273)
Q Consensus       261 l~~  263 (273)
                      +..
T Consensus       195 ~d~  197 (321)
T 2pt6_A          195 VDS  197 (321)
T ss_dssp             EEC
T ss_pred             ECC
Confidence            743

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=97.95  E-value=3.6e-06  Score=71.72  Aligned_cols=69  Identities=14%  Similarity=0.200  Sum_probs=55.9

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC--C-C------CCC
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE--S-V------PEG  256 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~--~-~------p~~  256 (273)
                      ..+..+|||||||+|..+..+++..| +.+++.+|. |.+++.|++.       ++|+++.||..+  + +      +..
T Consensus        77 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~  156 (247)
T 1sui_A           77 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS  156 (247)
T ss_dssp             HTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred             hhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence            34668999999999999999999998 789999998 8877776542       589999999876  2 2      233


Q ss_pred             -CEEEecc
Q 024046          257 -DAILMKV  263 (273)
Q Consensus       257 -D~~~l~~  263 (273)
                       |++++..
T Consensus       157 fD~V~~d~  164 (247)
T 1sui_A          157 YDFIFVDA  164 (247)
T ss_dssp             BSEEEECS
T ss_pred             EEEEEEcC
Confidence             9998754

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=97.95  E-value=1.4e-05  Score=66.39  Aligned_cols=74  Identities=22%  Similarity=0.217  Sum_probs=59.2

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhCCC-----------CCCceEEEcccCCCCC-C-C-CE
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFESVP-E-G-DA  258 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~-----------~~ri~~~~gD~f~~~p-~-~-D~  258 (273)
                      ..+..+|||||||+|.++..+++.. |+.+++++|. |..++.++.           .++++++.+|.....+ . . |+
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  154 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA  154 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence            4566899999999999999999985 7789999998 777776653           2479999999986433 2 2 99


Q ss_pred             EEeccccccc
Q 024046          259 ILMKVGNFEN  268 (273)
Q Consensus       259 ~~l~~vLHd~  268 (273)
                      |++...++..
T Consensus       155 i~~~~~~~~~  164 (226)
T 1i1n_A          155 IHVGAAAPVV  164 (226)
T ss_dssp             EEECSBBSSC
T ss_pred             EEECCchHHH
Confidence            9988877654

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=97.93  E-value=7.5e-06  Score=70.19  Aligned_cols=67  Identities=12%  Similarity=0.225  Sum_probs=54.2

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----CCCceEEEcccCC-CCC
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE-SVP  254 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~ri~~~~gD~f~-~~p  254 (273)
                      ...+++..+ ..+..+|||||||+|.++..|+++.  .+++++|+ |.+++.+++    .++++++.+|+++ +++
T Consensus        18 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~   90 (255)
T 3tqs_A           18 LQKIVSAIH-PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFS   90 (255)
T ss_dssp             HHHHHHHHC-CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGG
T ss_pred             HHHHHHhcC-CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHH
Confidence            345666665 6677899999999999999999986  57899998 778777654    3789999999998 454

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=97.92  E-value=1.7e-05  Score=68.70  Aligned_cols=74  Identities=15%  Similarity=0.088  Sum_probs=54.7

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec--hHHHHhCCCC----------------CCceEEEcccCC---CC
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL--PHVVQDAPSY----------------AGVEHVGGNMFE---SV  253 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl--p~v~~~a~~~----------------~ri~~~~gD~f~---~~  253 (273)
                      .....+|||||||+|.++..+++.. ..+++++|+  |.+++.|+.+                ++|+++..|+-.   ++
T Consensus        77 ~~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  155 (281)
T 3bzb_A           77 LIAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL  155 (281)
T ss_dssp             GTTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred             hcCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence            3456799999999999999888864 348999999  6777655321                378888766544   22


Q ss_pred             ----C-CC-CEEEecccccccC
Q 024046          254 ----P-EG-DAILMKVGNFENY  269 (273)
Q Consensus       254 ----p-~~-D~~~l~~vLHd~~  269 (273)
                          + .. |+|++..++|+.+
T Consensus       156 ~~~~~~~~fD~Ii~~dvl~~~~  177 (281)
T 3bzb_A          156 QRCTGLQRFQVVLLADLLSFHQ  177 (281)
T ss_dssp             HHHHSCSSBSEEEEESCCSCGG
T ss_pred             HhhccCCCCCEEEEeCcccChH
Confidence                2 33 9999999998754

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=97.92  E-value=7.8e-06  Score=70.96  Aligned_cols=68  Identities=19%  Similarity=0.295  Sum_probs=55.0

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCC----------------CCCCceEEEcccCCCC--CCC
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP----------------SYAGVEHVGGNMFESV--PEG  256 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~----------------~~~ri~~~~gD~f~~~--p~~  256 (273)
                      +...+|||||||+|..+..++++ |..+++++|+ |.+++.|+                ..+|++++.+|.++-+  +..
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~  152 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG  152 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence            45689999999999999999998 9889999999 88887654                2468999999986522  434


Q ss_pred             -CEEEeccc
Q 024046          257 -DAILMKVG  264 (273)
Q Consensus       257 -D~~~l~~v  264 (273)
                       |+|++...
T Consensus       153 fD~Ii~d~~  161 (281)
T 1mjf_A          153 FDVIIADST  161 (281)
T ss_dssp             EEEEEEECC
T ss_pred             eeEEEECCC
Confidence             99997544

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=97.91  E-value=5.4e-06  Score=68.16  Aligned_cols=69  Identities=13%  Similarity=0.063  Sum_probs=53.9

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC--------CCceEEEcccCCCC---C--C-CCEEEe
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFESV---P--E-GDAILM  261 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~--------~ri~~~~gD~f~~~---p--~-~D~~~l  261 (273)
                      +..+|||+|||+|.++..++++.+ .+++++|+ |.+++.|+.+        ++++++.+|+++..   +  . .|+|++
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  131 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL  131 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence            347999999999999999888754 57999998 8888877642        58999999987622   2  3 599988


Q ss_pred             ccccc
Q 024046          262 KVGNF  266 (273)
Q Consensus       262 ~~vLH  266 (273)
                      ...+|
T Consensus       132 ~~~~~  136 (201)
T 2ift_A          132 DPPFH  136 (201)
T ss_dssp             CCCSS
T ss_pred             CCCCC
Confidence            76644

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=97.90  E-value=7.3e-06  Score=69.52  Aligned_cols=75  Identities=11%  Similarity=0.283  Sum_probs=57.8

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC----CCceEEEcccCC-CCCC-CCE
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPE-GDA  258 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~----~ri~~~~gD~f~-~~p~-~D~  258 (273)
                      ..+++.++ ..+..+|||||||+|.++..++++.  .+++++|+ |.+++.++..    ++++++.+|+.+ +++. +..
T Consensus        19 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f   95 (245)
T 1yub_A           19 NQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY   95 (245)
T ss_dssp             HHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE
T ss_pred             HHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCc
Confidence            45556665 6677899999999999999999996  67999998 7778777653    689999999988 5653 333


Q ss_pred             EEecc
Q 024046          259 ILMKV  263 (273)
Q Consensus       259 ~~l~~  263 (273)
                      .++++
T Consensus        96 ~vv~n  100 (245)
T 1yub_A           96 KIVGN  100 (245)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            44444

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=97.90  E-value=7.9e-06  Score=71.01  Aligned_cols=68  Identities=15%  Similarity=0.136  Sum_probs=56.2

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcccCCC---CCCC-CEEE
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFES---VPEG-DAIL  260 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------~~ri~~~~gD~f~~---~p~~-D~~~  260 (273)
                      +.+.+|||||||.|..+..+++..|..+++++|+ |.+++.|++          .+|++++.+|..+.   .+.. |+|+
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  156 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence            4568999999999999999999988899999998 888886643          36899999999762   2344 9999


Q ss_pred             ecc
Q 024046          261 MKV  263 (273)
Q Consensus       261 l~~  263 (273)
                      +..
T Consensus       157 ~d~  159 (283)
T 2i7c_A          157 VDS  159 (283)
T ss_dssp             EEC
T ss_pred             EcC
Confidence            843

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=97.90  E-value=7.2e-06  Score=69.27  Aligned_cols=69  Identities=13%  Similarity=0.212  Sum_probs=55.8

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC--C-C------CCC
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE--S-V------PEG  256 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~--~-~------p~~  256 (273)
                      ..+..+|||||||+|..+..+++..| +.+++.+|. |.+++.|++.       ++|+++.+|.++  + +      +..
T Consensus        68 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~  147 (237)
T 3c3y_A           68 LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGS  147 (237)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred             hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence            34668999999999999999999998 789999998 8888777542       589999999976  2 2      233


Q ss_pred             -CEEEecc
Q 024046          257 -DAILMKV  263 (273)
Q Consensus       257 -D~~~l~~  263 (273)
                       |++++..
T Consensus       148 fD~I~~d~  155 (237)
T 3c3y_A          148 YDFGFVDA  155 (237)
T ss_dssp             EEEEEECS
T ss_pred             cCEEEECC
Confidence             9998753

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=97.89  E-value=1.8e-05  Score=71.99  Aligned_cols=77  Identities=6%  Similarity=0.024  Sum_probs=60.5

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCC--------------------------------------CeEEE
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ--------------------------------------IKAVN  226 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~--------------------------------------l~~~~  226 (273)
                      +..++.... |.+...|||.+||+|.++++++....+                                      .++++
T Consensus       190 Aa~ll~l~~-~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G  268 (393)
T 3k0b_A          190 AAALVLLTS-WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIG  268 (393)
T ss_dssp             HHHHHHHSC-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred             HHHHHHHhC-CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEE
Confidence            445566555 888899999999999999988876554                                      56999


Q ss_pred             eec-hHHHHhCCCC-------CCceEEEcccCC-CCCCC-CEEEec
Q 024046          227 FDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-DAILMK  262 (273)
Q Consensus       227 ~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~p~~-D~~~l~  262 (273)
                      +|. |.+++.|+.+       ++|+++.+|+++ +.+.. |+|++.
T Consensus       269 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~N  314 (393)
T 3k0b_A          269 GDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVAN  314 (393)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEEC
T ss_pred             EECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEEC
Confidence            998 8888877642       579999999998 34443 998875

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=97.87  E-value=7e-06  Score=72.55  Aligned_cols=68  Identities=21%  Similarity=0.263  Sum_probs=55.9

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcccCCC--CC-CC-CEEE
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFES--VP-EG-DAIL  260 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------~~ri~~~~gD~f~~--~p-~~-D~~~  260 (273)
                      +...+|||||||+|..+..+++..|..+++++|+ |.+++.|++          .+||+++.+|.++.  .+ .. |+|+
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  186 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  186 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence            4568999999999999999999989999999998 888886643          36899999999873  22 33 9999


Q ss_pred             ecc
Q 024046          261 MKV  263 (273)
Q Consensus       261 l~~  263 (273)
                      +..
T Consensus       187 ~d~  189 (314)
T 2b2c_A          187 TDS  189 (314)
T ss_dssp             ECC
T ss_pred             EcC
Confidence            744

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=97.87  E-value=1.9e-05  Score=67.85  Aligned_cols=64  Identities=9%  Similarity=0.015  Sum_probs=54.2

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC----------CCceEEEcccCCCCCCC-CEEEec
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------AGVEHVGGNMFESVPEG-DAILMK  262 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~----------~ri~~~~gD~f~~~p~~-D~~~l~  262 (273)
                      +.+.+|||||||+|..+..+++. | .+++++|+ |.+++.|+++          +|++++.+|.++-. .. |+|++.
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~-~~fD~Ii~d  146 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI-KKYDLIFCL  146 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC-CCEEEEEES
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH-hhCCEEEEC
Confidence            45689999999999999999998 8 89999998 8999988752          58999999998733 43 998874

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=97.86  E-value=1.7e-05  Score=71.97  Aligned_cols=76  Identities=16%  Similarity=0.119  Sum_probs=59.7

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCC--------------------------------------CCeEEE
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP--------------------------------------QIKAVN  226 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P--------------------------------------~l~~~~  226 (273)
                      +..++.... |.+..+|||++||+|.++++++..-.                                      ..++++
T Consensus       184 Aa~ll~~~~-~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G  262 (385)
T 3ldu_A          184 AAGLIYLTP-WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYG  262 (385)
T ss_dssp             HHHHHHTSC-CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEE
T ss_pred             HHHHHHhhC-CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEE
Confidence            445556555 88889999999999999999887643                                      257999


Q ss_pred             eec-hHHHHhCCCC-------CCceEEEcccCC-CCCCC-CEEEe
Q 024046          227 FDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-DAILM  261 (273)
Q Consensus       227 ~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~p~~-D~~~l  261 (273)
                      +|+ |.+++.|+.+       ++|+++.+|+++ +.|.. |+|++
T Consensus       263 vDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~  307 (385)
T 3ldu_A          263 YDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIIT  307 (385)
T ss_dssp             EESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEE
T ss_pred             EECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEE
Confidence            998 8888888753       479999999998 33443 98887

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=97.82  E-value=7.3e-06  Score=68.90  Aligned_cols=69  Identities=14%  Similarity=0.252  Sum_probs=55.1

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC---CCC-----CC-C
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE---SVP-----EG-D  257 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~---~~p-----~~-D  257 (273)
                      .+..+|||||||+|..+..+++..| +.+++.+|. |..++.|++.       ++|+++.+|..+   .+|     .. |
T Consensus        71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD  150 (232)
T 3cbg_A           71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD  150 (232)
T ss_dssp             HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence            3567999999999999999999998 789999998 8777777642       579999999865   121     33 9


Q ss_pred             EEEeccc
Q 024046          258 AILMKVG  264 (273)
Q Consensus       258 ~~~l~~v  264 (273)
                      ++++...
T Consensus       151 ~V~~d~~  157 (232)
T 3cbg_A          151 LIFIDAD  157 (232)
T ss_dssp             EEEECSC
T ss_pred             EEEECCC
Confidence            9987654

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=97.82  E-value=2e-05  Score=67.35  Aligned_cols=67  Identities=9%  Similarity=0.110  Sum_probs=52.1

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC----CCceEEEcccCC-CCC
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVP  254 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~----~ri~~~~gD~f~-~~p  254 (273)
                      ...+++..+ ..+..+|||||||+|.++. +. +.+..+++++|+ |.+++.+++.    ++++++.+|+.+ +++
T Consensus        10 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~   82 (252)
T 1qyr_A           10 IDSIVSAIN-PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFG   82 (252)
T ss_dssp             HHHHHHHHC-CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHH
T ss_pred             HHHHHHhcC-CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHH
Confidence            345666665 6677899999999999999 64 555555999998 8888877653    589999999987 443

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=97.82  E-value=3e-05  Score=70.36  Aligned_cols=78  Identities=13%  Similarity=0.046  Sum_probs=60.6

Q ss_pred             hHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCC--------------------------------------CeEE
Q 024046          184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ--------------------------------------IKAV  225 (273)
Q Consensus       184 ~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~--------------------------------------l~~~  225 (273)
                      .+..++.... |.+...|+|.+||+|.++++.+....+                                      .+++
T Consensus       182 LAaall~l~~-~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~  260 (384)
T 3ldg_A          182 MAAAIILLSN-WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDIS  260 (384)
T ss_dssp             HHHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred             HHHHHHHHhC-CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEE
Confidence            3445566555 888899999999999999988876554                                      5699


Q ss_pred             Eeec-hHHHHhCCCC-------CCceEEEcccCC-CCCCC-CEEEec
Q 024046          226 NFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-DAILMK  262 (273)
Q Consensus       226 ~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~p~~-D~~~l~  262 (273)
                      ++|. |.+++.|+.+       ++|+++.+|+++ +.+.. |+|++.
T Consensus       261 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~N  307 (384)
T 3ldg_A          261 GFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISN  307 (384)
T ss_dssp             EEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEEC
T ss_pred             EEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEEC
Confidence            9998 8888877642       579999999998 34443 988864

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=97.80  E-value=5.1e-05  Score=64.05  Aligned_cols=68  Identities=16%  Similarity=0.231  Sum_probs=54.1

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhCC----CCCCceEEEcccCCC--CC--CC--CEEEec
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAP----SYAGVEHVGGNMFES--VP--EG--DAILMK  262 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~----~~~ri~~~~gD~f~~--~p--~~--D~~~l~  262 (273)
                      +++..+|||||||+|.++..+++.- |+-+++++|. |++++.+.    ..++|..+.+|.-.+  .|  ..  |++++.
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d  154 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD  154 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence            6688999999999999999999985 8889999998 77776553    347899999998763  22  22  877653

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=97.79  E-value=9.2e-06  Score=70.36  Aligned_cols=72  Identities=13%  Similarity=0.036  Sum_probs=51.0

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC--------------C---------------------
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------------A---------------------  240 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~--------------~---------------------  240 (273)
                      +..+|||||||+|.+ ..++...+..+++++|+ |.+++.|++.              .                     
T Consensus        71 ~~~~vLDiGcG~G~~-~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  149 (289)
T 2g72_A           71 SGRTLIDIGSGPTVY-QLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  149 (289)
T ss_dssp             CCSEEEEETCTTCCG-GGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCeEEEECCCcChH-HHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence            567999999999994 44444445568999998 7777765431              0                     


Q ss_pred             -CceEEEcccCCC-------CCCC--CEEEecccccccC
Q 024046          241 -GVEHVGGNMFES-------VPEG--DAILMKVGNFENY  269 (273)
Q Consensus       241 -ri~~~~gD~f~~-------~p~~--D~~~l~~vLHd~~  269 (273)
                       .++++.+|+.+.       +|.+  |+|++..+||..+
T Consensus       150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~  188 (289)
T 2g72_A          150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVS  188 (289)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHC
T ss_pred             hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhc
Confidence             145677798762       2332  9999999999744

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=97.79  E-value=2.5e-05  Score=70.78  Aligned_cols=69  Identities=13%  Similarity=0.144  Sum_probs=56.8

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCCCC-C-CC-CEEEecccccc
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESV-P-EG-DAILMKVGNFE  267 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~~~-p-~~-D~~~l~~vLHd  267 (273)
                      ...+|||||||+|.++..++++  ..+++++|. +.+++.|+.+     -+++++.+|+++.. + .. |+|++.-.+|.
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~  310 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV  310 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred             CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence            4579999999999999999998  468999998 8888877653     25899999999843 3 23 99999888876

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=97.77  E-value=3.8e-05  Score=70.77  Aligned_cols=72  Identities=24%  Similarity=0.325  Sum_probs=56.2

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCCCC-----
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP-----  254 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~p-----  254 (273)
                      .+++.++ ..+..+|||+|||+|.++..+++.  ..+++++|. |.+++.|+.+      ++++|+.+|+++.++     
T Consensus       277 ~~~~~l~-~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~  353 (433)
T 1uwv_A          277 RALEWLD-VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWA  353 (433)
T ss_dssp             HHHHHHT-CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGG
T ss_pred             HHHHhhc-CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhh
Confidence            3444444 556689999999999999999988  568999998 8888877642      589999999988432     


Q ss_pred             C--CCEEEe
Q 024046          255 E--GDAILM  261 (273)
Q Consensus       255 ~--~D~~~l  261 (273)
                      .  .|++++
T Consensus       354 ~~~fD~Vv~  362 (433)
T 1uwv_A          354 KNGFDKVLL  362 (433)
T ss_dssp             TTCCSEEEE
T ss_pred             cCCCCEEEE
Confidence            2  299886

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=97.72  E-value=4.1e-05  Score=69.20  Aligned_cols=64  Identities=22%  Similarity=0.282  Sum_probs=50.4

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCC-------CCCceEEEcccCC-CCCCC-CEEEe
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVGGNMFE-SVPEG-DAILM  261 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~-------~~ri~~~~gD~f~-~~p~~-D~~~l  261 (273)
                      +.++|||||||+|.+++..+++-. -+++++|...++..|++       .++|+++.+|+.+ ++|+. |+++.
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~aGA-~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~Dvivs  155 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQAGA-RRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVS  155 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEEC
T ss_pred             CCCEEEEeCCCccHHHHHHHHhCC-CEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEe
Confidence            447899999999999887777644 47899998556665543       2789999999988 68865 99875

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=97.72  E-value=1.8e-05  Score=71.96  Aligned_cols=69  Identities=14%  Similarity=0.268  Sum_probs=51.7

Q ss_pred             CCcceEEEecCC------ccHHHHHHHHH-CCCCeEEEeec-hHHHHhCCCCCCceEEEcccCC-CCC-------CC-CE
Q 024046          196 QNVERLVDVGGG------FGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVP-------EG-DA  258 (273)
Q Consensus       196 ~~~~~vvDVGGG------~G~~~~~l~~~-~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gD~f~-~~p-------~~-D~  258 (273)
                      .+..+|||||||      +|..+..++++ +|+.+++++|+ |.+.   ...++|+++.+|+.+ +++       .. |+
T Consensus       215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDl  291 (419)
T 3sso_A          215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---VDELRIRTIQGDQNDAEFLDRIARRYGPFDI  291 (419)
T ss_dssp             TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---GCBTTEEEEECCTTCHHHHHHHHHHHCCEEE
T ss_pred             CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---hcCCCcEEEEecccccchhhhhhcccCCccE
Confidence            356899999999      66666666665 69999999999 5542   234899999999987 444       23 99


Q ss_pred             EEeccccccc
Q 024046          259 ILMKVGNFEN  268 (273)
Q Consensus       259 ~~l~~vLHd~  268 (273)
                      |+.. ..|.+
T Consensus       292 Visd-gsH~~  300 (419)
T 3sso_A          292 VIDD-GSHIN  300 (419)
T ss_dssp             EEEC-SCCCH
T ss_pred             EEEC-Ccccc
Confidence            9865 45654

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=97.71  E-value=0.00011  Score=61.88  Aligned_cols=77  Identities=17%  Similarity=0.208  Sum_probs=56.8

Q ss_pred             HHHhhcc--cCCCcceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHH----HHhCCCCCCceEEEcccCCCC-----
Q 024046          187 RILEHYE--GFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHV----VQDAPSYAGVEHVGGNMFESV-----  253 (273)
Q Consensus       187 ~il~~~~--~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~~~Dl-p~v----~~~a~~~~ri~~~~gD~f~~~-----  253 (273)
                      .++..++  .+.+..+|||||||+|..+..+++. -|+-+++.+|+ |.+    ++.++..++|+++.+|...+.     
T Consensus        64 ~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~  143 (232)
T 3id6_C           64 AILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSV  143 (232)
T ss_dssp             HHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTT
T ss_pred             HHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhcc
Confidence            4444443  1567799999999999999999987 46888999998 654    344544578999999987632     


Q ss_pred             CCC-CEEEecc
Q 024046          254 PEG-DAILMKV  263 (273)
Q Consensus       254 p~~-D~~~l~~  263 (273)
                      ++. |++++.-
T Consensus       144 ~~~~D~I~~d~  154 (232)
T 3id6_C          144 VENVDVLYVDI  154 (232)
T ss_dssp             CCCEEEEEECC
T ss_pred             ccceEEEEecC
Confidence            233 9987653

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=97.68  E-value=6.2e-05  Score=64.79  Aligned_cols=66  Identities=20%  Similarity=0.255  Sum_probs=49.8

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCC--C------CceEE--EcccCCCCC-C-CCEEEec
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY--A------GVEHV--GGNMFESVP-E-GDAILMK  262 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~--~------ri~~~--~gD~f~~~p-~-~D~~~l~  262 (273)
                      +.+..+|||||||+|.++..++++   .+++++|+-.++..+...  .      +|+++  .+|+.. +| . .|+|++.
T Consensus        72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~-l~~~~fD~V~sd  147 (265)
T 2oxt_A           72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHT-LPVERTDVIMCD  147 (265)
T ss_dssp             CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTT-SCCCCCSEEEEC
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhH-CCCCCCcEEEEe
Confidence            556789999999999999999887   579999994443333221  2      68999  999987 44 3 3999986


Q ss_pred             cc
Q 024046          263 VG  264 (273)
Q Consensus       263 ~v  264 (273)
                      ..
T Consensus       148 ~~  149 (265)
T 2oxt_A          148 VG  149 (265)
T ss_dssp             CC
T ss_pred             Cc
Confidence            54

>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}

Probab=97.67  E-value=4.9e-05  Score=56.59  Aligned_cols=64  Identities=19%  Similarity=0.310  Sum_probs=55.8

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHh--CcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhhcC
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQL--QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSN  115 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~--g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~~~  115 (273)
                      .+..|++.|.+.|+.|+.+||+.+  |+    ++..+.+.|+.|...|+++..   +.+.|++|+.+..++..
T Consensus        14 ~d~~IL~~L~~~g~~s~~eLA~~l~~gi----S~~aVs~rL~~Le~~GLV~~~---~rg~Y~LT~~G~~~l~~   79 (111)
T 3b73_A           14 WDDRILEIIHEEGNGSPKELEDRDEIRI----SKSSVSRRLKKLADHDLLQPL---ANGVYVITEEGEAYLNG   79 (111)
T ss_dssp             HHHHHHHHHHHHSCBCHHHHHTSTTCCS----CHHHHHHHHHHHHHTTSEEEC---STTCEEECHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEec---CCceEEECchHHHHHHH
Confidence            356688999877899999999999  99    999999999999999999974   44589999999876654

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=97.66  E-value=6e-05  Score=66.45  Aligned_cols=67  Identities=15%  Similarity=0.125  Sum_probs=54.4

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCCC------CCceEEEcccCC-C-CCCC-CEEEe
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S-VPEG-DAILM  261 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~-~p~~-D~~~l  261 (273)
                      ..+..+|||+|||+|..+..+++..+ ..+++++|+ |..++.++.+      ++|+++.+|+.+ + .+.. |+|++
T Consensus       116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~  193 (315)
T 1ixk_A          116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILL  193 (315)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEE
Confidence            56678999999999999999999975 478999998 7777766542      579999999987 2 2333 99987

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=97.66  E-value=5.8e-05  Score=65.36  Aligned_cols=66  Identities=14%  Similarity=0.117  Sum_probs=50.0

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCC--C------CceEE--EcccCCCCC-C-CCEEEec
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY--A------GVEHV--GGNMFESVP-E-GDAILMK  262 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~--~------ri~~~--~gD~f~~~p-~-~D~~~l~  262 (273)
                      +.+..+|||||||+|.++..++++   -+++++|+-.++..+.+.  .      +|+++  .+|+.. +| . .|+|++.
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~-l~~~~fD~Vvsd  155 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTK-MEPFQADTVLCD  155 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGG-CCCCCCSEEEEC
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhh-CCCCCcCEEEEC
Confidence            556789999999999999999988   479999994453333221  2      78999  999986 44 3 3999986


Q ss_pred             cc
Q 024046          263 VG  264 (273)
Q Consensus       263 ~v  264 (273)
                      ..
T Consensus       156 ~~  157 (276)
T 2wa2_A          156 IG  157 (276)
T ss_dssp             CC
T ss_pred             CC
Confidence            55

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=97.66  E-value=3.2e-05  Score=68.90  Aligned_cols=74  Identities=9%  Similarity=0.045  Sum_probs=58.8

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCC-----CeEEEeec-hHHHHhCCCC-----CCceEEEcccCCCCCC-C-CEEEec
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQ-----IKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPE-G-DAILMK  262 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~-----l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~~~p~-~-D~~~l~  262 (273)
                      ....+|+|+|||+|.++..+++..|+     .+++++|+ |.+++.|+..     -+++++.+|.+.+.+. . |+|+..
T Consensus       129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~N  208 (344)
T 2f8l_A          129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD  208 (344)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred             CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEEC
Confidence            35689999999999999999999876     67899998 8877777542     3689999999986553 3 999887


Q ss_pred             ccccccC
Q 024046          263 VGNFENY  269 (273)
Q Consensus       263 ~vLHd~~  269 (273)
                      --++.++
T Consensus       209 PPfg~~~  215 (344)
T 2f8l_A          209 LPVGYYP  215 (344)
T ss_dssp             CCCSEES
T ss_pred             CCCCCcC
Confidence            6554443

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=97.65  E-value=7.9e-06  Score=70.00  Aligned_cols=72  Identities=13%  Similarity=0.128  Sum_probs=51.8

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----------------------------------
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----------------------------------  239 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----------------------------------  239 (273)
                      .+..+|||||||+|.++..+++..- -+++++|. |.+++.|++.                                   
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~  132 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  132 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence            4568999999999988776555432 25899998 7777765421                                   


Q ss_pred             CCce-EEEcccCCC--CC---C--CCEEEeccccccc
Q 024046          240 AGVE-HVGGNMFES--VP---E--GDAILMKVGNFEN  268 (273)
Q Consensus       240 ~ri~-~~~gD~f~~--~p---~--~D~~~l~~vLHd~  268 (273)
                      .+|+ ++.+|+.++  ++   .  .|+|++..+||..
T Consensus       133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i  169 (263)
T 2a14_A          133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECA  169 (263)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHH
T ss_pred             hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHh
Confidence            1233 899999883  22   2  3999999999974

>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19

Probab=97.65  E-value=6.1e-05  Score=52.48  Aligned_cols=62  Identities=10%  Similarity=0.088  Sum_probs=52.0

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcc-hHHHHHHHHhcCCceeccccCCCcceecChhchH
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPM-MLDRMLRLLVSHRVLECSVSGGERLYALNPVSKY  111 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~-~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~  111 (273)
                      .+-.|++.|...||.|+.+||+.+|+    ++. .+++.|..|...|+++..+.+.+ .|.+|+.+..
T Consensus        12 ~~~~IL~~Lk~~g~~ta~eiA~~Lgi----t~~~aVr~hL~~Le~eGlV~~~~~gRP-~w~LT~~g~~   74 (79)
T 1xmk_A           12 IKEKICDYLFNVSDSSALNLAKNIGL----TKARDINAVLIDMERQGDVYRQGTTPP-IWHLTDKKRE   74 (79)
T ss_dssp             HHHHHHHHHHHTCCEEHHHHHHHHCG----GGHHHHHHHHHHHHHTTSEEEECSSSC-EEEECHHHHT
T ss_pred             HHHHHHHHHHHcCCcCHHHHHHHcCC----CcHHHHHHHHHHHHHCCCEEecCCCCC-CeEeCHhHHh
Confidence            35567788988899999999999999    888 99999999999999986432233 8999998753

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=97.59  E-value=3.9e-05  Score=65.79  Aligned_cols=69  Identities=17%  Similarity=0.185  Sum_probs=53.8

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-h-------HHHHhCCCC-------CCceEEEcccCCC---CC--
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-P-------HVVQDAPSY-------AGVEHVGGNMFES---VP--  254 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p-------~v~~~a~~~-------~ri~~~~gD~f~~---~p--  254 (273)
                      ..+..+|||+|||+|.++..+++.  ..+++++|+ |       ..++.|+.+       +||+++.+|..+.   ++  
T Consensus        81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~  158 (258)
T 2r6z_A           81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT  158 (258)
T ss_dssp             GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred             cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence            445579999999999999999997  468999998 7       667766543       5799999999862   44  


Q ss_pred             -C-CCEEEecccc
Q 024046          255 -E-GDAILMKVGN  265 (273)
Q Consensus       255 -~-~D~~~l~~vL  265 (273)
                       . .|+|++.-..
T Consensus       159 ~~~fD~V~~dP~~  171 (258)
T 2r6z_A          159 QGKPDIVYLDPMY  171 (258)
T ss_dssp             HCCCSEEEECCCC
T ss_pred             CCCccEEEECCCC
Confidence             3 3999985443

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=97.57  E-value=0.0001  Score=64.25  Aligned_cols=66  Identities=18%  Similarity=0.189  Sum_probs=55.8

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-----------CCCceEEEcccCCCC--C-CC-CEE
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFESV--P-EG-DAI  259 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----------~~ri~~~~gD~f~~~--p-~~-D~~  259 (273)
                      +++++||=||||.|..+.++++..|..+++++|+ |.|++.+++           .+|++++.+|-++-+  . +. |+|
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI  161 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI  161 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence            5789999999999999999999988889999999 899887653           389999999999832  2 23 888


Q ss_pred             Ee
Q 024046          260 LM  261 (273)
Q Consensus       260 ~l  261 (273)
                      ++
T Consensus       162 i~  163 (294)
T 3o4f_A          162 IS  163 (294)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=97.54  E-value=6.8e-05  Score=64.98  Aligned_cols=67  Identities=19%  Similarity=0.115  Sum_probs=53.8

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCCC--CCEEEec
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE--GDAILMK  262 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p~--~D~~~l~  262 (273)
                      ..+..+|||+|||+|.+++.++++ +..+++.+|+ |..++.++.+       ++|+++.+|.++-.++  .|.|+|.
T Consensus       123 ~~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~  199 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMG  199 (278)
T ss_dssp             CCTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEEC
T ss_pred             cCCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEEC
Confidence            456789999999999999999987 4568999998 8887776542       7899999999873333  3887764

>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5

Probab=97.51  E-value=0.00023  Score=51.23  Aligned_cols=62  Identities=19%  Similarity=0.273  Sum_probs=52.8

Q ss_pred             HHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhch
Q 024046           39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK  110 (273)
Q Consensus        39 ~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~  110 (273)
                      .++....++.|+..| . |+.|+.|||+.+|+    +...+.+.|+.|...|++...   . +.|.+|+.+.
T Consensus        26 ~~l~~~~r~~Il~~L-~-~~~~~~eLa~~l~i----s~~tv~~~L~~L~~~Glv~~~---~-g~y~l~~~g~   87 (96)
T 1y0u_A           26 YAVTNPVRRKILRML-D-KGRSEEEIMQTLSL----SKKQLDYHLKVLEAGFCIERV---G-ERWVVTDAGK   87 (96)
T ss_dssp             HHHSCHHHHHHHHHH-H-TTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---T-TEEEECTTTC
T ss_pred             HHhCCHHHHHHHHHH-c-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE---C-CEEEECCCch
Confidence            345556677899999 5 79999999999999    999999999999999999974   4 6899988653

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=97.49  E-value=0.00021  Score=66.11  Aligned_cols=71  Identities=15%  Similarity=0.131  Sum_probs=56.1

Q ss_pred             hhcccCCCcceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhCCC------CCCceEEEcccCCC---CC-CC-
Q 024046          190 EHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFES---VP-EG-  256 (273)
Q Consensus       190 ~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~------~~ri~~~~gD~f~~---~p-~~-  256 (273)
                      ..++ ..+..+|||+|||+|..+..+++..|+ .+++++|. |..++.++.      .++|+++.+|+.+.   ++ .. 
T Consensus       253 ~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~f  331 (450)
T 2yxl_A          253 IVLD-PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVA  331 (450)
T ss_dssp             HHHC-CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCE
T ss_pred             HhcC-CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCC
Confidence            3344 556789999999999999999999987 78999998 666665543      25799999999872   44 33 


Q ss_pred             CEEEe
Q 024046          257 DAILM  261 (273)
Q Consensus       257 D~~~l  261 (273)
                      |+|++
T Consensus       332 D~Vl~  336 (450)
T 2yxl_A          332 DKVLL  336 (450)
T ss_dssp             EEEEE
T ss_pred             CEEEE
Confidence            99986

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=97.49  E-value=8.4e-05  Score=64.04  Aligned_cols=68  Identities=12%  Similarity=0.066  Sum_probs=54.7

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhCCCC------CCceEEEcccCC-CC-----CCC-CEE
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SV-----PEG-DAI  259 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~~-----p~~-D~~  259 (273)
                      .....+|||+|||+|..+..+++..++ .+++++|. +..++.++.+      ++++++.+|+.+ +.     +.. |+|
T Consensus        81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V  160 (274)
T 3ajd_A           81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI  160 (274)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence            556789999999999999999999887 78999998 7767765532      589999999976 22     333 998


Q ss_pred             Eec
Q 024046          260 LMK  262 (273)
Q Consensus       260 ~l~  262 (273)
                      ++.
T Consensus       161 l~d  163 (274)
T 3ajd_A          161 LLD  163 (274)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            875

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=97.48  E-value=0.00015  Score=63.64  Aligned_cols=68  Identities=24%  Similarity=0.303  Sum_probs=49.4

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-----hHHHHhCC--CC--CCceEEEc-ccCCCCCC-CCEEEecc
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-----PHVVQDAP--SY--AGVEHVGG-NMFESVPE-GDAILMKV  263 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-----p~v~~~a~--~~--~ri~~~~g-D~f~~~p~-~D~~~l~~  263 (273)
                      +++..+|||||||+|.++..++++   -+++.+|+     +..+..+.  ..  ++|+++.+ |++..-+. .|+|++..
T Consensus        80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~  156 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDI  156 (305)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECC
Confidence            556689999999999999999988   36888998     53332221  12  67999999 99872223 49999855


Q ss_pred             cc
Q 024046          264 GN  265 (273)
Q Consensus       264 vL  265 (273)
                      ..
T Consensus       157 ~~  158 (305)
T 2p41_A          157 GE  158 (305)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=97.36  E-value=0.00031  Score=61.20  Aligned_cols=80  Identities=13%  Similarity=0.083  Sum_probs=53.8

Q ss_pred             HHHHhhcccCC-CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHh-CCCCCCceEEE-cccCC----CCCC--
Q 024046          186 ERILEHYEGFQ-NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQD-APSYAGVEHVG-GNMFE----SVPE--  255 (273)
Q Consensus       186 ~~il~~~~~~~-~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~-a~~~~ri~~~~-gD~f~----~~p~--  255 (273)
                      ..+++.+. .. ...++||||||+|.++..+++. +..+++++|+ |.+++. ++..+|+.... .|+..    .+|.  
T Consensus        74 ~~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~  151 (291)
T 3hp7_A           74 EKALAVFN-LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGL  151 (291)
T ss_dssp             HHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCC
T ss_pred             HHHHHhcC-CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCC
Confidence            34556665 43 4579999999999999988887 5568999998 766665 33446665443 34322    2453  


Q ss_pred             CCEEEecccccc
Q 024046          256 GDAILMKVGNFE  267 (273)
Q Consensus       256 ~D~~~l~~vLHd  267 (273)
                      .|++++...+|+
T Consensus       152 fD~v~~d~sf~s  163 (291)
T 3hp7_A          152 PSFASIDVSFIS  163 (291)
T ss_dssp             CSEEEECCSSSC
T ss_pred             CCEEEEEeeHhh
Confidence            388887666654

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=97.36  E-value=8.1e-05  Score=66.14  Aligned_cols=63  Identities=13%  Similarity=0.115  Sum_probs=51.1

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------C-CceEEEcccCCCC------CC-CCEEE
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------A-GVEHVGGNMFESV------PE-GDAIL  260 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~-ri~~~~gD~f~~~------p~-~D~~~  260 (273)
                      +..+|||+|||+|.++..+++...  +++.+|+ |.+++.|+.+       + +++++.+|+++..      .. .|+|+
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii  230 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL  230 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred             CCCcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence            457999999999999999999754  8999998 8888877642       2 5999999998732      22 39998


Q ss_pred             e
Q 024046          261 M  261 (273)
Q Consensus       261 l  261 (273)
                      +
T Consensus       231 ~  231 (332)
T 2igt_A          231 T  231 (332)
T ss_dssp             E
T ss_pred             E
Confidence            8

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=97.33  E-value=0.00032  Score=64.45  Aligned_cols=63  Identities=16%  Similarity=0.160  Sum_probs=51.7

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCCCCC-CCEEEe
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE-GDAILM  261 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~p~-~D~~~l  261 (273)
                      .+..+|||+|||+|.++..+++..  .+++++|. |.+++.|+.+      + ++++.+|+++..+. .|++++
T Consensus       289 ~~~~~VLDlgcG~G~~sl~la~~~--~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~  359 (425)
T 2jjq_A          289 VEGEKILDMYSGVGTFGIYLAKRG--FNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIV  359 (425)
T ss_dssp             CCSSEEEEETCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEE
T ss_pred             CCCCEEEEeeccchHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEE
Confidence            456899999999999999999873  47899998 8888877643      4 89999999985443 498887

>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A

Probab=97.29  E-value=0.00035  Score=50.73  Aligned_cols=66  Identities=18%  Similarity=0.241  Sum_probs=52.2

Q ss_pred             HHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChh
Q 024046           38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV  108 (273)
Q Consensus        38 ~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~  108 (273)
                      ..+|..-.++.|+..|.+ |+.|+.|||+.+|+    ++..+.+.|+.|...|++.....+..-.|++|+.
T Consensus        17 ~~~l~~~~r~~Il~~L~~-~~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~   82 (102)
T 3pqk_A           17 LKTLSHPVRLMLVCTLVE-GEFSVGELEQQIGI----GQPTLSQQLGVLRESGIVETRRNIKQIFYRLTEA   82 (102)
T ss_dssp             HHHHCSHHHHHHHHHHHT-CCBCHHHHHHHHTC----CTTHHHHHHHHHHHTTSEEEECSSSCCEEEECSS
T ss_pred             HHHcCCHHHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECcH
Confidence            345555677888889976 89999999999999    9999999999999999998642122235777763

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=97.28  E-value=0.00021  Score=63.43  Aligned_cols=65  Identities=17%  Similarity=0.207  Sum_probs=52.2

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCCCCCEEEec
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEGDAILMK  262 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p~~D~~~l~  262 (273)
                      +.+..+|||+|||+|.++.. ++  +..+++++|+ |..++.++.+       ++++++.+|.++.....|++++.
T Consensus       193 ~~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~d  265 (336)
T 2yx1_A          193 VSLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMN  265 (336)
T ss_dssp             CCTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEEC
T ss_pred             cCCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEEC
Confidence            34668999999999999999 77  5778999998 8888877642       57999999999844223988873

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=97.27  E-value=0.00021  Score=61.20  Aligned_cols=76  Identities=9%  Similarity=0.150  Sum_probs=53.6

Q ss_pred             HHhhcccCCCc--ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHH-------HHhCCC-------C-CCceEEEccc
Q 024046          188 ILEHYEGFQNV--ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHV-------VQDAPS-------Y-AGVEHVGGNM  249 (273)
Q Consensus       188 il~~~~~~~~~--~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v-------~~~a~~-------~-~ri~~~~gD~  249 (273)
                      +..... ..+.  .+|||+|||.|..+..++++  ..+++.+|. |.+       ++.+..       . +||+++.+|.
T Consensus        78 l~~al~-l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~  154 (258)
T 2oyr_A           78 VAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS  154 (258)
T ss_dssp             HHHHTT-CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred             HHHHhc-ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH
Confidence            334443 4455  79999999999999999998  457999998 643       333221       1 5799999999


Q ss_pred             CCC---CCCC-CEEEeccccc
Q 024046          250 FES---VPEG-DAILMKVGNF  266 (273)
Q Consensus       250 f~~---~p~~-D~~~l~~vLH  266 (273)
                      .+-   ++.. |+|++--..+
T Consensus       155 ~~~L~~~~~~fDvV~lDP~y~  175 (258)
T 2oyr_A          155 LTALTDITPRPQVVYLDPMFP  175 (258)
T ss_dssp             HHHSTTCSSCCSEEEECCCCC
T ss_pred             HHHHHhCcccCCEEEEcCCCC
Confidence            762   3443 9998854443

>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A

Probab=97.18  E-value=0.00026  Score=47.61  Aligned_cols=54  Identities=9%  Similarity=0.282  Sum_probs=45.9

Q ss_pred             HhChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecC
Q 024046           46 QLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN  106 (273)
Q Consensus        46 elglfd~L~~~g-~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt  106 (273)
                      +..|++.|...+ +.|..|||+.+|+    +...+.+++..|...|++...   ..+.|+++
T Consensus        12 ~~~IL~~L~~~~~~~s~~eLA~~lgl----sr~tv~~~l~~L~~~G~I~~~---~~G~y~lg   66 (67)
T 2heo_A           12 EQKILQVLSDDGGPVAIFQLVKKCQV----PKKTLNQVLYRLKKEDRVSSP---SPKYWSIG   66 (67)
T ss_dssp             HHHHHHHHHHHCSCEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEEE---ETTEEEEC
T ss_pred             HHHHHHHHHHcCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEecC---CCceEeeC
Confidence            556888887654 8999999999999    999999999999999999762   45778764

>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}

Probab=97.18  E-value=0.00027  Score=50.90  Aligned_cols=65  Identities=22%  Similarity=0.262  Sum_probs=51.9

Q ss_pred             HHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChh
Q 024046           39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV  108 (273)
Q Consensus        39 ~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~  108 (273)
                      .++....++.|+..|.+ |+.|+.|||+.+|+    ++..+.+.|+.|...|++.....+....|++++.
T Consensus        18 ~~l~~~~r~~Il~~L~~-~~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~   82 (98)
T 3jth_A           18 KAMANERRLQILCMLHN-QELSVGELCAKLQL----SQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKSE   82 (98)
T ss_dssp             HHHCSHHHHHHHHHTTT-SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCTTCCEEEECCH
T ss_pred             HHcCCHHHHHHHHHHhc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECHH
Confidence            34555677889999987 89999999999999    9999999999999999998642112235777664

>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A

Probab=97.17  E-value=0.00054  Score=47.93  Aligned_cols=64  Identities=14%  Similarity=0.294  Sum_probs=49.6

Q ss_pred             HHHhChhHHHHhCC---CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHh
Q 024046           44 AIQLGVFEIIAKAG---ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYF  112 (273)
Q Consensus        44 a~elglfd~L~~~g---~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l  112 (273)
                      -.+..|++.|.+.+   ++|+.+||+.+|+    +...+.+.|.-|...|++...+ ..++.|.+.+....+
T Consensus        10 ~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgv----sr~tV~~~L~~Le~~G~I~~~g-~~~~~W~i~~~~~~~   76 (81)
T 1qbj_A           10 DQEQRILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKEA-GTPPLWKIAVSTQAW   76 (81)
T ss_dssp             HHHHHHHHHHHHHCTTCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEES-SSSCEEEEC------
T ss_pred             HHHHHHHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecC-CCCCeeEEeCcHHhc
Confidence            34666888888877   7999999999999    9999999999999999998754 345788888766543

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=97.17  E-value=0.0005  Score=67.09  Aligned_cols=77  Identities=17%  Similarity=0.092  Sum_probs=59.0

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHH------------------------------------------CCCC
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSK------------------------------------------YPQI  222 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~------------------------------------------~P~l  222 (273)
                      +..++.... |.+...|+|.+||+|.++++.+..                                          .|+.
T Consensus       179 Aa~ll~~~~-~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~  257 (703)
T 3v97_A          179 AAAIVMRSG-WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSS  257 (703)
T ss_dssp             HHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHhhC-CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCc
Confidence            445556555 888889999999999999988765                                          3457


Q ss_pred             eEEEeec-hHHHHhCCCC-------CCceEEEcccCC-CCC--C-C-CEEEec
Q 024046          223 KAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVP--E-G-DAILMK  262 (273)
Q Consensus       223 ~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~p--~-~-D~~~l~  262 (273)
                      ++++.|+ |.+++.|+.+       ++|++..+|+++ ..|  . . |+|++.
T Consensus       258 ~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~N  310 (703)
T 3v97_A          258 HFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSN  310 (703)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEEC
T ss_pred             cEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeC
Confidence            8999998 8888877653       569999999987 223  2 3 888764

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=97.15  E-value=0.00058  Score=62.64  Aligned_cols=71  Identities=20%  Similarity=0.175  Sum_probs=55.3

Q ss_pred             hhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCCC---CCC-C-CE
Q 024046          190 EHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFES---VPE-G-DA  258 (273)
Q Consensus       190 ~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~~---~p~-~-D~  258 (273)
                      ..++ ..+..+|||+|||+|..+..+++..|+.+++++|. |..++.++.+     -+++++.+|+...   ++. . |+
T Consensus       240 ~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~  318 (429)
T 1sqg_A          240 TWLA-PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDR  318 (429)
T ss_dssp             HHHC-CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEE
T ss_pred             HHcC-CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCE
Confidence            3344 55678999999999999999999999989999998 6656655432     2589999999872   443 3 99


Q ss_pred             EEe
Q 024046          259 ILM  261 (273)
Q Consensus       259 ~~l  261 (273)
                      |++
T Consensus       319 Vl~  321 (429)
T 1sqg_A          319 ILL  321 (429)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            986

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=97.15  E-value=0.00065  Score=58.64  Aligned_cols=65  Identities=20%  Similarity=0.198  Sum_probs=54.5

Q ss_pred             hHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC--CCceEEEcccCC
Q 024046          184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFE  251 (273)
Q Consensus       184 ~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~--~ri~~~~gD~f~  251 (273)
                      ..+.+++.+. ..+...+||.+||.|.++..|+++  +.+.+++|. |.+++.|++.  +|++++.+||-+
T Consensus        10 Ll~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~   77 (285)
T 1wg8_A           10 LYQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRH   77 (285)
T ss_dssp             THHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGG
T ss_pred             HHHHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcch
Confidence            3567777776 777789999999999999999998  778999998 8887665432  699999999976

>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A

Probab=97.15  E-value=0.00047  Score=51.98  Aligned_cols=67  Identities=21%  Similarity=0.174  Sum_probs=51.7

Q ss_pred             HHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChh
Q 024046           38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV  108 (273)
Q Consensus        38 ~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~  108 (273)
                      ..+|....++.|+..|...|+.|+.|||+.+|+    ++..+.+.|+.|...|++.....+....|++++.
T Consensus        36 ~~al~~~~rl~IL~~L~~~~~~s~~eLa~~l~i----s~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~  102 (122)
T 1u2w_A           36 LKAIADENRAKITYALCQDEELCVCDIANILGV----TIANASHHLRTLYKQGVVNFRKEGKLALYSLGDE  102 (122)
T ss_dssp             HHHHHSHHHHHHHHHHHHSSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC----CCEEEESCH
T ss_pred             HHHhCCHHHHHHHHHHHHCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEECCEEEEEECHH
Confidence            445555678889999986589999999999999    9999999999999999998631111225666654

>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28

Probab=97.09  E-value=0.00043  Score=49.68  Aligned_cols=69  Identities=13%  Similarity=0.181  Sum_probs=55.3

Q ss_pred             HHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecccc---CCCcceecChhchH
Q 024046           39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS---GGERLYALNPVSKY  111 (273)
Q Consensus        39 ~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~---~~~~~y~lt~~s~~  111 (273)
                      .++....++.|+..|...++.|+.+||+.+|+    ++..+.+.|+.|...|+++....   .....|.+|+.+..
T Consensus        11 ~~l~~~~~~~iL~~L~~~~~~~~~ela~~l~i----s~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~   82 (100)
T 1ub9_A           11 HILGNPVRLGIMIFLLPRRKAPFSQIQKVLDL----TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGME   82 (100)
T ss_dssp             HHHHSHHHHHHHHHHHHHSEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHH
T ss_pred             cccCChHHHHHHHHHHhcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHH
Confidence            46666778889998876579999999999999    99999999999999999985310   12236888887743

>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}

Probab=97.07  E-value=0.00043  Score=49.60  Aligned_cols=66  Identities=12%  Similarity=0.145  Sum_probs=51.4

Q ss_pred             HHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhc
Q 024046           40 ATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS  109 (273)
Q Consensus        40 aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s  109 (273)
                      ++....++.|+..|...++.|+.|||+.+|+    ++..+.+.|+.|...|++.....+....|.+|+.+
T Consensus        20 ~l~~~~~~~il~~l~~~~~~s~~ela~~l~i----s~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~~~   85 (99)
T 3cuo_A           20 AMSHPKRLLILCMLSGSPGTSAGELTRITGL----SASATSQHLARMRDEGLIDSQRDAQRILYSIKNEA   85 (99)
T ss_dssp             HHCSHHHHHHHHHHTTCCSEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEECSSCEEEEECCHH
T ss_pred             HhCChHHHHHHHHHHhCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHH
Confidence            3344567788888987559999999999999    99999999999999999987421122357777654

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=97.07  E-value=0.00058  Score=65.56  Aligned_cols=97  Identities=22%  Similarity=0.258  Sum_probs=62.6

Q ss_pred             chhhhhhcCcchHHHHHHHHHhcchhhHHHHHhhcc---cCCCcceEEEecCCccHHH---HHHHHHC-CCCeEEEeech
Q 024046          158 HIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYE---GFQNVERLVDVGGGFGVTL---SMITSKY-PQIKAVNFDLP  230 (273)
Q Consensus       158 ~~~~~~~~~~~~~~~f~~am~~~~~~~~~~il~~~~---~~~~~~~vvDVGGG~G~~~---~~l~~~~-P~l~~~~~Dlp  230 (273)
                      ..|+.+++|+-+-+.|.+|+..       .+.+..+   ...+...|+|||+|+|-+.   ...+++. -.+++..++-.
T Consensus       322 ~tYevFEkD~vKy~~Ye~AI~~-------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEkn  394 (637)
T 4gqb_A          322 QTYEVFEKDPIKYSQYQQAIYK-------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKN  394 (637)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH-------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESC
T ss_pred             hhhhhhcCChhhHHHHHHHHHH-------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            3577888888766667766532       2222211   1224567999999999883   3333332 22467888874


Q ss_pred             HHHHhCCC-------CCCceEEEcccCC-CCCCC-CEEEe
Q 024046          231 HVVQDAPS-------YAGVEHVGGNMFE-SVPEG-DAILM  261 (273)
Q Consensus       231 ~v~~~a~~-------~~ri~~~~gD~f~-~~p~~-D~~~l  261 (273)
                      .++..+.+       .++|+++.||+.+ ..|+- |+++.
T Consensus       395 p~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVS  434 (637)
T 4gqb_A          395 PNAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVS  434 (637)
T ss_dssp             HHHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEEC
T ss_pred             HHHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEE
Confidence            44444443       1899999999998 78875 98763

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=97.07  E-value=0.00038  Score=58.55  Aligned_cols=50  Identities=12%  Similarity=0.110  Sum_probs=36.7

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCC
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP  237 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~  237 (273)
                      .+++.++......+|||||||+|.++..++++ +..+++++|+ |.+++.+.
T Consensus        27 ~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~   77 (232)
T 3opn_A           27 KALKEFHLEINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKI   77 (232)
T ss_dssp             HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHH
T ss_pred             HHHHHcCCCCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHH
Confidence            44555541224579999999999999999988 3348999998 66665543

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=97.06  E-value=0.00047  Score=63.58  Aligned_cols=77  Identities=21%  Similarity=0.085  Sum_probs=56.7

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHC-------------CCCeEEEeec-hHHHHhCCCC------C--CceE
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-------------PQIKAVNFDL-PHVVQDAPSY------A--GVEH  244 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-------------P~l~~~~~Dl-p~v~~~a~~~------~--ri~~  244 (273)
                      .+++... .....+|+|.|||+|.++..+.+..             +..+++++|+ |.++..|+.+      .  ++++
T Consensus       162 ~mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i  240 (445)
T 2okc_A          162 AMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPI  240 (445)
T ss_dssp             HHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSE
T ss_pred             HHHHHhC-CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCE
Confidence            3444444 4456799999999999999998864             5577999998 8877766531      2  7889


Q ss_pred             EEcccCCC-CCCC-CEEEeccc
Q 024046          245 VGGNMFES-VPEG-DAILMKVG  264 (273)
Q Consensus       245 ~~gD~f~~-~p~~-D~~~l~~v  264 (273)
                      ..||.+.. .... |+|+..--
T Consensus       241 ~~gD~l~~~~~~~fD~Iv~NPP  262 (445)
T 2okc_A          241 VCEDSLEKEPSTLVDVILANPP  262 (445)
T ss_dssp             EECCTTTSCCSSCEEEEEECCC
T ss_pred             eeCCCCCCcccCCcCEEEECCC
Confidence            99999983 3333 99887643

>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}

Probab=97.06  E-value=0.00032  Score=52.55  Aligned_cols=67  Identities=15%  Similarity=0.171  Sum_probs=54.8

Q ss_pred             HHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhc
Q 024046           38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS  109 (273)
Q Consensus        38 ~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s  109 (273)
                      ..+|....++.|+..|.+ ||.|+.|||+.+|+    +...+.+.|+.|...|++.....+..-.|++++.+
T Consensus        12 ~~al~~~~R~~Il~~L~~-~~~~~~eLa~~l~i----s~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~~   78 (118)
T 3f6o_A           12 FQALADPTRRAVLGRLSR-GPATVSELAKPFDM----ALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEP   78 (118)
T ss_dssp             HHHHTSHHHHHHHHHHHT-CCEEHHHHHTTCCS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHH
T ss_pred             HHHhCCHHHHHHHHHHHh-CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEEecCCEEEEEECHHH
Confidence            456666788999999986 89999999999999    99999999999999999986421222468887754

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=97.06  E-value=0.00029  Score=64.29  Aligned_cols=65  Identities=22%  Similarity=0.371  Sum_probs=51.5

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC--------CCceEEEcccCCCCC-----CCCEEE
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFESVP-----EGDAIL  260 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~--------~ri~~~~gD~f~~~p-----~~D~~~  260 (273)
                      +....+|||+|||+|..+..+++..  .+++.+|. |.+++.|+.+        ++|+++.+|+++.++     ..|+|+
T Consensus        91 l~~g~~VLDLgcG~G~~al~LA~~g--~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~  168 (410)
T 3ll7_A           91 IREGTKVVDLTGGLGIDFIALMSKA--SQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIY  168 (410)
T ss_dssp             SCTTCEEEESSCSSSHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEE
T ss_pred             cCCCCEEEEeCCCchHHHHHHHhcC--CEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEE
Confidence            3346899999999999999998874  58999998 8877776532        579999999997322     239998


Q ss_pred             e
Q 024046          261 M  261 (273)
Q Consensus       261 l  261 (273)
                      +
T Consensus       169 l  169 (410)
T 3ll7_A          169 V  169 (410)
T ss_dssp             E
T ss_pred             E
Confidence            7

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=97.05  E-value=0.0002  Score=64.85  Aligned_cols=65  Identities=9%  Similarity=0.001  Sum_probs=51.3

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------C--CceEEEcccCCCCC------CC-CEE
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A--GVEHVGGNMFESVP------EG-DAI  259 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~--ri~~~~gD~f~~~p------~~-D~~  259 (273)
                      .+..+|||+|||+|.++..+++... .+++++|+ |.+++.|+.+      +  +++++.+|.++.++      .. |+|
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~ga-~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I  289 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGGA-MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII  289 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTB-SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence            4568999999999999999998632 37899998 8888877642      3  89999999987322      23 998


Q ss_pred             Ee
Q 024046          260 LM  261 (273)
Q Consensus       260 ~l  261 (273)
                      ++
T Consensus       290 i~  291 (385)
T 2b78_A          290 II  291 (385)
T ss_dssp             EE
T ss_pred             EE
Confidence            87

>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19

Probab=97.02  E-value=0.00063  Score=47.07  Aligned_cols=58  Identities=16%  Similarity=0.307  Sum_probs=48.8

Q ss_pred             HHhChhHHHHhCC---CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecCh
Q 024046           45 IQLGVFEIIAKAG---ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP  107 (273)
Q Consensus        45 ~elglfd~L~~~g---~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~  107 (273)
                      .+..|++.|...+   +.|+.|||+.+|+    +...+.+.|+-|...|++...+ ..++.|.+++
T Consensus        15 ~~~~IL~~L~~~~~~~~~t~~eLA~~Lgv----s~~tV~~~L~~L~~~G~I~~~g-~~~~~W~i~~   75 (77)
T 1qgp_A           15 QEQRILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKEA-GTPPLWKIAV   75 (77)
T ss_dssp             HHHHHHHHHHHHCSSSCEEHHHHHHHHCC----CHHHHHHHHHHHHHHTSEEEEC-SSSCEEEECC
T ss_pred             HHHHHHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecC-CCCCceEecC
Confidence            3566888888877   8999999999999    9999999999999999998753 2457777765

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=97.02  E-value=0.00025  Score=64.38  Aligned_cols=64  Identities=19%  Similarity=0.242  Sum_probs=51.6

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCC------CCC-CEEEe
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESV------PEG-DAILM  261 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~------p~~-D~~~l  261 (273)
                      +..+|||+|||+|.++..+++. +..+++++|+ |..++.|+.+       ++++++.+|.++..      +.. |+|++
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~  295 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL  295 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence            6689999999999999999987 4457999998 8888777642       28999999998732      223 99987

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=97.01  E-value=0.00041  Score=64.35  Aligned_cols=66  Identities=9%  Similarity=0.038  Sum_probs=53.3

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhCCCC------CCceEEEcccCC-C--CCCC-CEEEe
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S--VPEG-DAILM  261 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~--~p~~-D~~~l  261 (273)
                      .....+|||+|||+|..+..+++..++ .+++.+|+ |..++.++++      . |+++.+|... +  .+.. |+|++
T Consensus        99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~  176 (464)
T 3m6w_A           99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLL  176 (464)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEE
T ss_pred             cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEE
Confidence            456789999999999999999999876 68999998 7777766542      4 8999999876 2  3443 99986

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=97.01  E-value=0.00057  Score=53.14  Aligned_cols=59  Identities=20%  Similarity=0.182  Sum_probs=44.4

Q ss_pred             CCCcceEEEecCCccH-HHHHHHHHCCCCeEEEeec-hHHHHhCCCCCCceEEEcccCCCCC---CC-CEEEecc
Q 024046          195 FQNVERLVDVGGGFGV-TLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVP---EG-DAILMKV  263 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~-~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gD~f~~~p---~~-D~~~l~~  263 (273)
                      +....++||||||.|. .+..|++. -+..+++.|+ |..++         ++..|+|+|..   ++ |+|+..|
T Consensus        33 ~~~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~---------~v~dDiF~P~~~~Y~~~DLIYsir   97 (153)
T 2k4m_A           33 SGPGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG---------IVRDDITSPRMEIYRGAALIYSIR   97 (153)
T ss_dssp             SCSSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT---------EECCCSSSCCHHHHTTEEEEEEES
T ss_pred             CCCCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc---------eEEccCCCCcccccCCcCEEEEcC
Confidence            4456799999999995 77777764 3577899997 54443         89999999766   24 8887654

>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A

Probab=96.95  E-value=0.0038  Score=47.63  Aligned_cols=92  Identities=10%  Similarity=0.081  Sum_probs=60.7

Q ss_pred             hhhhhHHHHHHHHHHhhhhHHHHHH-----HHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCce
Q 024046           18 EEEEEESYSHAMQLAMGVVLPMATQ-----AAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVL   92 (273)
Q Consensus        18 ~~~~~~~~~~l~~~~~g~~~~~aL~-----~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll   92 (273)
                      +++.......+...+...+...+-.     +..+..++..|...|+.|..+||+.+++    ++..+.++++-|...|++
T Consensus         6 ~~~l~~~l~~~~~~~~~~~~~~l~~~~~~lt~~~~~vL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv   81 (142)
T 3ech_A            6 NPDLMPALMAVFQHVRTRIQSELDCQRLDLTPPDVHVLKLIDEQRGLNLQDLGRQMCR----DKALITRKIRELEGRNLV   81 (142)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTCCHHHHHHHHC-------CHHHHHHHHHHHTTSE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCE
Confidence            3444455555555554443333332     3567778999988789999999999999    999999999999999999


Q ss_pred             eccccCCC---cceecChhchHhh
Q 024046           93 ECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        93 ~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      ++.....+   -.+.+|+.++.+.
T Consensus        82 ~r~~~~~DrR~~~~~LT~~G~~~~  105 (142)
T 3ech_A           82 RRERNPSDQRSFQLFLTDEGLAIH  105 (142)
T ss_dssp             EC----------CCEECHHHHHHH
T ss_pred             eeccCCCCCCeeeeEECHHHHHHH
Confidence            97421111   2477888776554

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=96.94  E-value=0.00027  Score=63.90  Aligned_cols=63  Identities=21%  Similarity=0.188  Sum_probs=51.3

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCCC------CCC-CEEEe
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESV------PEG-DAILM  261 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~------p~~-D~~~l  261 (273)
                      +..+|||+|||+|.++..+++.  ..+++++|+ |..++.|+.+      ++++++.+|.++..      +.. |+|++
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~  285 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL  285 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEE
Confidence            6689999999999999999998  567899998 8888877642      45999999998732      233 99887

>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73

Probab=96.90  E-value=0.0013  Score=45.64  Aligned_cols=44  Identities=18%  Similarity=0.187  Sum_probs=39.9

Q ss_pred             hChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        47 lglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      ..|++.|...|+.|+.|||+.+|+    +...+.+.|..|...|++..
T Consensus         3 ~~Il~~L~~~~~~s~~eLa~~lgv----s~~tv~r~L~~L~~~GlI~~   46 (81)
T 2htj_A            3 NEILEFLNRHNGGKTAEIAEALAV----TDYQARYYLLLLEKAGMVQR   46 (81)
T ss_dssp             HHHHHHHHHSCCCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence            457788877679999999999999    99999999999999999984

>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0

Probab=96.88  E-value=0.00092  Score=49.52  Aligned_cols=63  Identities=14%  Similarity=0.243  Sum_probs=51.1

Q ss_pred             HHhChhHHHHhCCCCC--HHHHHHHh-CcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhh
Q 024046           45 IQLGVFEIIAKAGELS--APEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV  113 (273)
Q Consensus        45 ~elglfd~L~~~g~~t--~~eLA~~~-g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~  113 (273)
                      .++.|+..|.. |+.+  +.||++.+ |+    ++..+.+.|+.|...|++++... ..-.|.+|+.++.+.
T Consensus        28 wrl~IL~~L~~-g~~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~~-r~~~y~LT~~G~~l~   93 (111)
T 3df8_A           28 YTMLIISVLGN-GSTRQNFNDIRSSIPGI----SSTILSRRIKDLIDSGLVERRSG-QITTYALTEKGMNVR   93 (111)
T ss_dssp             THHHHHHHHTS-SSSCBCHHHHHHTSTTC----CHHHHHHHHHHHHHTTSEEEEES-SSEEEEECHHHHHHH
T ss_pred             cHHHHHHHHhc-CCCCCCHHHHHHHccCC----CHHHHHHHHHHHHHCCCEEEeec-CcEEEEECccHHHHH
Confidence            34555666764 7888  99999999 99    99999999999999999997432 345799999987654

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=96.87  E-value=0.00058  Score=61.40  Aligned_cols=52  Identities=13%  Similarity=0.096  Sum_probs=43.4

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCC
Q 024046          198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE  251 (273)
Q Consensus       198 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~  251 (273)
                      ..+|+|+|||+|.++..+++..  .+++++|. |.+++.|+.+      ++++++.+|.++
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~  272 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEE  272 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHH
T ss_pred             CCEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHH
Confidence            3689999999999999998864  36899998 8888877542      689999999876

>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}

Probab=96.85  E-value=0.00075  Score=52.98  Aligned_cols=70  Identities=19%  Similarity=0.290  Sum_probs=57.9

Q ss_pred             hHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhch
Q 024046           36 VLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK  110 (273)
Q Consensus        36 ~~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~  110 (273)
                      -...+|..-.++.|+..|.. |+.|+.+||+.+|+    +...+.+.|+.|...|+|+....+..-.|++|+.+.
T Consensus        50 ~~l~aL~~p~R~~IL~~L~~-~~~t~~eLa~~lgl----s~stvs~hL~~L~~aGlV~~~~~Gr~~~y~lt~~~~  119 (151)
T 3f6v_A           50 DQLEVAAEPTRRRLVQLLTS-GEQTVNNLAAHFPA----SRSAISQHLRVLTEAGLVTPRKDGRFRYYRLDPQGL  119 (151)
T ss_dssp             CHHHHHTSHHHHHHHHHGGG-CCEEHHHHHTTSSS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHH
Confidence            35677778899999999985 89999999999999    999999999999999999864212223688888653

>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}

Probab=96.84  E-value=0.00089  Score=49.32  Aligned_cols=64  Identities=16%  Similarity=0.211  Sum_probs=50.2

Q ss_pred             HHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhch
Q 024046           42 QAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK  110 (273)
Q Consensus        42 ~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~  110 (273)
                      ....++.|+..|.. |+.|+.|||+.+|+    ++..+.++|+.|...|++..........|.+|+.+.
T Consensus        19 ~~~~r~~IL~~L~~-~~~~~~ela~~l~i----s~~tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~~   82 (114)
T 2oqg_A           19 SDETRWEILTELGR-ADQSASSLATRLPV----SRQAIAKHLNALQACGLVESVKVGREIRYRALGAEL   82 (114)
T ss_dssp             TCHHHHHHHHHHHH-SCBCHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHH
T ss_pred             CChHHHHHHHHHHc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeEEecCCEEEEEechHHH
Confidence            33456778888854 79999999999999    999999999999999999863211223488887653

>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A

Probab=96.83  E-value=0.00092  Score=48.94  Aligned_cols=62  Identities=21%  Similarity=0.331  Sum_probs=47.5

Q ss_pred             HHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecCh
Q 024046           41 TQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP  107 (273)
Q Consensus        41 L~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~  107 (273)
                      +..-.++.|+..|.. |+.|+.|||+.+|+    ++..+.+.|+.|...|++.....+....|++++
T Consensus        23 l~~~~r~~IL~~L~~-~~~~~~ela~~l~i----s~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~   84 (106)
T 1r1u_A           23 LGDYNRIRIMELLSV-SEASVGHISHQLNL----SQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDD   84 (106)
T ss_dssp             TCSHHHHHHHHHHHH-CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEESS
T ss_pred             hCCHHHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECh
Confidence            334566778888885 79999999999999    999999999999999999864211112455554

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=96.80  E-value=0.00047  Score=62.53  Aligned_cols=66  Identities=18%  Similarity=0.120  Sum_probs=51.9

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------C-CceEEEcccCCCC------CCC-CEE
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------A-GVEHVGGNMFESV------PEG-DAI  259 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~-ri~~~~gD~f~~~------p~~-D~~  259 (273)
                      .+..+|||+|||+|.++..+++.. ..+++++|+ |..++.|+.+       + +++++.+|.++..      +.. |+|
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I  297 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI  297 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence            456799999999999999999975 457999998 7877776542       2 7899999998732      223 998


Q ss_pred             Eec
Q 024046          260 LMK  262 (273)
Q Consensus       260 ~l~  262 (273)
                      ++.
T Consensus       298 i~d  300 (396)
T 3c0k_A          298 VMD  300 (396)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            874

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=96.77  E-value=0.0044  Score=55.80  Aligned_cols=72  Identities=22%  Similarity=0.224  Sum_probs=53.3

Q ss_pred             cceEEEecCCccHHHHHH--------HHHC-------CCCeEEEeechHH-----H---HhCCC----------C-CC--
Q 024046          198 VERLVDVGGGFGVTLSMI--------TSKY-------PQIKAVNFDLPHV-----V---QDAPS----------Y-AG--  241 (273)
Q Consensus       198 ~~~vvDVGGG~G~~~~~l--------~~~~-------P~l~~~~~Dlp~v-----~---~~a~~----------~-~r--  241 (273)
                      .-+|+|+|||+|..+..+        .+++       |+++++.-|||.-     -   +....          . .+  
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            578999999999987766        4444       8899999999762     1   21111          0 11  


Q ss_pred             -ceEEEcccCC-CCCCC--CEEEecccccccC
Q 024046          242 -VEHVGGNMFE-SVPEG--DAILMKVGNFENY  269 (273)
Q Consensus       242 -i~~~~gD~f~-~~p~~--D~~~l~~vLHd~~  269 (273)
                       +.-++|.|+. .+|..  |+++.+..||--+
T Consensus       133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls  164 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLS  164 (374)
T ss_dssp             EEEEEESCTTSCCSCTTCEEEEEEESCTTBCS
T ss_pred             EEEecChhhhcccCCCcceEEEEecceeeeec
Confidence             5678899998 58865  9999999999755

>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A

Probab=96.75  E-value=0.00047  Score=50.79  Aligned_cols=64  Identities=20%  Similarity=0.269  Sum_probs=48.5

Q ss_pred             HHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChh
Q 024046           40 ATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV  108 (273)
Q Consensus        40 aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~  108 (273)
                      +|..-.++.|+..|.. |+.|+.|||+.+|+    ++..+.+.|+.|...|++.....+....|++++.
T Consensus        21 al~~~~r~~IL~~L~~-~~~s~~eLa~~lgi----s~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~   84 (108)
T 2kko_A           21 ALANGRRLQILDLLAQ-GERAVEAIATATGM----NLTTASANLQALKSGGLVEARREGTRQYYRIAGE   84 (108)
T ss_dssp             HHTTSTTHHHHHHHTT-CCEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEEEETTEEEEEESCH
T ss_pred             HhCCHHHHHHHHHHHc-CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChH
Confidence            3334456677788876 79999999999999    9999999999999999998632111224666653

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=96.74  E-value=0.0016  Score=58.38  Aligned_cols=69  Identities=14%  Similarity=0.104  Sum_probs=54.2

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCCCCceEEEcccCCCCC-CC--CEEEecccc
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVP-EG--DAILMKVGN  265 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~~ri~~~~gD~f~~~p-~~--D~~~l~~vL  265 (273)
                      +....++||+|++.|.++-.++++  ..+++.+|.-.+.......++|+++.+|.|.-.| .+  |++++-.+.
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~  280 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVE  280 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSS
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCC
Confidence            456789999999999999999998  6789999974444444456899999999999544 33  888775543

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=96.65  E-value=0.0011  Score=64.60  Aligned_cols=64  Identities=9%  Similarity=0.035  Sum_probs=50.7

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC--------CCceEEEcccCCCC---CCC-CEEEe
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFESV---PEG-DAILM  261 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~--------~ri~~~~gD~f~~~---p~~-D~~~l  261 (273)
                      ...+|||+|||+|.++..+++... .+++.+|+ |..++.|+++        ++++++.+|.++.+   ... |+|++
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~ga-~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~  615 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGGA-RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFI  615 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred             CCCcEEEeeechhHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEE
Confidence            457999999999999999998543 36999998 7888777542        48999999999832   223 99887

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=96.65  E-value=0.0036  Score=54.86  Aligned_cols=67  Identities=18%  Similarity=0.182  Sum_probs=52.3

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCC---CC--C-CCEEE
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES---VP--E-GDAIL  260 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~---~p--~-~D~~~  260 (273)
                      ..+..+|||+|||+|..+..+++.. +..+++.+|+ +..++.++++      ++|+++.+|+.+.   .+  . .|.|+
T Consensus       100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl  179 (309)
T 2b9e_A          100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL  179 (309)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence            4567899999999999999999985 5678999998 7766665532      6799999999762   11  2 38888


Q ss_pred             e
Q 024046          261 M  261 (273)
Q Consensus       261 l  261 (273)
                      +
T Consensus       180 ~  180 (309)
T 2b9e_A          180 L  180 (309)
T ss_dssp             E
T ss_pred             E
Confidence            6

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=96.64  E-value=0.0026  Score=59.26  Aligned_cols=65  Identities=22%  Similarity=0.220  Sum_probs=52.9

Q ss_pred             CcceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCCC------CCceEEEcccCC-C--CCCC-CEEEe
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S--VPEG-DAILM  261 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~--~p~~-D~~~l  261 (273)
                      ...+|||+|||+|..+..+++..+ ..+++.+|+ +..++.++.+      ++|+++.+|... +  .+.. |+|++
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~  193 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILL  193 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEE
Confidence            668999999999999999999976 478999998 7777766542      579999999987 2  3443 99987

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=96.64  E-value=0.0015  Score=59.35  Aligned_cols=63  Identities=17%  Similarity=0.072  Sum_probs=48.5

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCCCC---CC-CCEEEe
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESV---PE-GDAILM  261 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~~~---p~-~D~~~l  261 (273)
                      +..+|||+|||+|.++..+++...  +++.+|+ |..++.|+.+     -..++..+|.++.+   +. .|+|++
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~ga--~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~  286 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKGA--YALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLL  286 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEE
T ss_pred             CCCeEEEcccchhHHHHHHHHcCC--eEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEE
Confidence            478999999999999999999854  4999998 8888877653     12357799998732   33 398886

>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48

Probab=96.62  E-value=0.0017  Score=46.62  Aligned_cols=64  Identities=13%  Similarity=0.201  Sum_probs=51.4

Q ss_pred             HhChhHHHHhCCCCCHHHH----HHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhh
Q 024046           46 QLGVFEIIAKAGELSAPEI----AAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV  113 (273)
Q Consensus        46 elglfd~L~~~g~~t~~eL----A~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~  113 (273)
                      ++.++..|...++.|..+|    |+.+++    ++..+.++++.|...|++++....+...|.+|+.+..+.
T Consensus        10 q~~iL~~l~~~~~~~~~el~~~la~~l~i----s~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~~~   77 (99)
T 1tbx_A           10 EAIVLAYLYDNEGIATYDLYKKVNAEFPM----STATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLFA   77 (99)
T ss_dssp             HHHHHHHHTTCTTCBHHHHHHHHHTTSCC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHcCCcCHHHHHHHHHHHcCC----CHHHHHHHHHHHHHCCCEEEEecCCceEEEECHHHHHHH
Confidence            4557777777679999999    899999    999999999999999999874212334688888887665

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=96.59  E-value=0.0029  Score=61.14  Aligned_cols=96  Identities=16%  Similarity=0.137  Sum_probs=60.3

Q ss_pred             hhhhhhcCcchHHHHHHHHHhcchhhHHHHHhhcccCCCcceEEEecCCccHHHHHHHHH----C---------CCCeEE
Q 024046          159 IFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSK----Y---------PQIKAV  225 (273)
Q Consensus       159 ~~~~~~~~~~~~~~f~~am~~~~~~~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~----~---------P~l~~~  225 (273)
                      .|+.+.+|+-+.+.|.+|+...       +.+.+..-.+...|+|||||+|-+....+++    .         ...+++
T Consensus       378 tYe~fekD~vRy~~Y~~AI~~a-------l~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVy  450 (745)
T 3ua3_A          378 VYNTFEQDQIKYDVYGEAVVGA-------LKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLY  450 (745)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHH-------HHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEE
T ss_pred             HHHHHcCChhhHHHHHHHHHHH-------HHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEE
Confidence            5777777877777777766431       2122211124578999999999996432222    2         234788


Q ss_pred             Eeec-hHHHHhCCC------CCCceEEEcccCC-CC------CC-CCEEEe
Q 024046          226 NFDL-PHVVQDAPS------YAGVEHVGGNMFE-SV------PE-GDAILM  261 (273)
Q Consensus       226 ~~Dl-p~v~~~a~~------~~ri~~~~gD~f~-~~------p~-~D~~~l  261 (273)
                      ++|- |..+...+.      .++|+++.||+.+ ..      |+ .|+++-
T Consensus       451 AVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVS  501 (745)
T 3ua3_A          451 IVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVS  501 (745)
T ss_dssp             EEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEE
T ss_pred             EEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEE
Confidence            9987 543322221      2789999999988 45      54 498764

>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*

Probab=96.59  E-value=0.003  Score=48.42  Aligned_cols=56  Identities=21%  Similarity=0.218  Sum_probs=47.1

Q ss_pred             HHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhh
Q 024046           51 EIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV  113 (273)
Q Consensus        51 d~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~  113 (273)
                      ..+...++.|+.+||+.+|+    ++..+.++++.|...|++...   ....|.+|+.+..+.
T Consensus        15 ~l~~~~~~~~~~ela~~l~v----s~~tvs~~l~~Le~~Glv~r~---~~~~~~LT~~g~~~~   70 (142)
T 1on2_A           15 MLIEEKGYARVSDIAEALAV----HPSSVTKMVQKLDKDEYLIYE---KYRGLVLTSKGKKIG   70 (142)
T ss_dssp             HHHHHHSSCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE---TTTEEEECHHHHHHH
T ss_pred             HHHhhcCCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe---eCceEEEchhHHHHH
Confidence            34444468999999999999    999999999999999999973   456799999887654

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=96.58  E-value=0.0051  Score=54.34  Aligned_cols=67  Identities=13%  Similarity=0.148  Sum_probs=56.7

Q ss_pred             hHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhCCC--CCCceEEEcccCC
Q 024046          184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS--YAGVEHVGGNMFE  251 (273)
Q Consensus       184 ~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~--~~ri~~~~gD~f~  251 (273)
                      ...++++.+. ..+...+||..+|.|..+..++++. |+.+.+++|. |++++.++.  .+|++++.++|-+
T Consensus        45 Ll~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~  115 (347)
T 3tka_A           45 LLDEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSA  115 (347)
T ss_dssp             TTHHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGG
T ss_pred             cHHHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHH
Confidence            3467778776 6677899999999999999999985 8899999998 888887753  2799999999976

>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69

Probab=96.57  E-value=0.0032  Score=46.11  Aligned_cols=62  Identities=18%  Similarity=0.231  Sum_probs=47.9

Q ss_pred             hChhHHHHhCCCCCHHHHHHHh-CcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           47 LGVFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        47 lglfd~L~~~g~~t~~eLA~~~-g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      +.|+..|.. |+.++.||++.+ |+    ++..+.+.|+.|...|++++.....+   -.|.+|+.+..+.
T Consensus        17 ~~IL~~L~~-~~~~~~eLa~~l~~i----s~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~l~   82 (107)
T 2hzt_A           17 XVILXHLTH-GKKRTSELKRLMPNI----TQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLE   82 (107)
T ss_dssp             HHHHHHHTT-CCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGH
T ss_pred             HHHHHHHHh-CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHHHH
Confidence            335556654 799999999999 99    99999999999999999997432111   2588888775543

>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A

Probab=96.57  E-value=0.0019  Score=48.63  Aligned_cols=63  Identities=19%  Similarity=0.313  Sum_probs=48.7

Q ss_pred             HHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChh
Q 024046           41 TQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV  108 (273)
Q Consensus        41 L~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~  108 (273)
                      |....++.|+..|.+ |+.++.+||+.+|+    ++..+.+.|+.|...|++.....+..-.|++++.
T Consensus        43 L~~~~rl~IL~~L~~-~~~s~~ela~~lgi----s~stvs~~L~~Le~~Glv~~~~~gr~~~y~l~~~  105 (122)
T 1r1t_A           43 LADPNRLRLLSLLAR-SELCVGDLAQAIGV----SESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQDH  105 (122)
T ss_dssp             HCCHHHHHHHHHHTT-CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSH
T ss_pred             hCCHHHHHHHHHHHc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChH
Confidence            334467778888876 79999999999999    9999999999999999998632111124666653

>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A

Probab=96.56  E-value=0.0032  Score=45.29  Aligned_cols=56  Identities=13%  Similarity=0.252  Sum_probs=48.1

Q ss_pred             ChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhh
Q 024046           48 GVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV  113 (273)
Q Consensus        48 glfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~  113 (273)
                      .|+..|.. | .+..+||..+|+    +++.+...++.|...|+++.    ..+.|.+|+.+..+.
T Consensus        12 ~IL~~i~~-~-~~~t~La~~~~l----s~~~~~~~l~~L~~~GLI~~----~~~~~~LT~kG~~~l   67 (95)
T 1r7j_A           12 AILEACKS-G-SPKTRIMYGANL----SYALTGRYIKMLMDLEIIRQ----EGKQYMLTKKGEELL   67 (95)
T ss_dssp             HHHHHHTT-C-BCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE----ETTEEEECHHHHHHH
T ss_pred             HHHHHHHc-C-CCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEE----ECCeeEEChhHHHHH
Confidence            35566654 5 899999999999    99999999999999999997    345699999998665

>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19

Probab=96.56  E-value=0.0019  Score=45.11  Aligned_cols=60  Identities=15%  Similarity=0.130  Sum_probs=48.0

Q ss_pred             HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhc
Q 024046           44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS  109 (273)
Q Consensus        44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s  109 (273)
                      .....|++.|...| .|+.|||+.+|+    +...+++.|.-|...|++.... ..+-.|+++...
T Consensus        17 ~~~~~IL~lL~~~g-~sa~eLAk~Lgi----Sk~aVr~~L~~Le~eG~I~~~~-~~PP~W~~~~~~   76 (82)
T 1oyi_A           17 EIVCEAIKTIGIEG-ATAAQLTRQLNM----EKREVNKALYDLQRSAMVYSSD-DIPPRWFMTTEA   76 (82)
T ss_dssp             HHHHHHHHHHSSST-EEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEECS-SSSCEEESCC--
T ss_pred             HHHHHHHHHHHHcC-CCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeCC-CCCCcceeccCc
Confidence            45567888998765 999999999999    9999999999999999999743 233567777643

>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}

Probab=96.55  E-value=0.0058  Score=46.28  Aligned_cols=66  Identities=15%  Similarity=0.140  Sum_probs=53.6

Q ss_pred             HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccC---CCcceecChhchHhh
Q 024046           44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFV  113 (273)
Q Consensus        44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~---~~~~y~lt~~s~~l~  113 (273)
                      ..++.++..|...++.|..+||+.+++    ++..+.+.++-|...|+++.....   +.-.|.+|+.+..+.
T Consensus        31 ~~~~~iL~~l~~~~~~~~~ela~~l~i----s~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~   99 (142)
T 3bdd_A           31 LTRYSILQTLLKDAPLHQLALQERLQI----DRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL   99 (142)
T ss_dssp             HHHHHHHHHHHHHCSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence            345668888887679999999999999    999999999999999999874321   123588999887766

>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}

Probab=96.54  E-value=0.0019  Score=55.64  Aligned_cols=57  Identities=18%  Similarity=0.309  Sum_probs=47.7

Q ss_pred             hChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhch
Q 024046           47 LGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK  110 (273)
Q Consensus        47 lglfd~L~~~g-~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~  110 (273)
                      +.|+++|...+ +.|+.|||+.+|+    +..-+.|+|.-|+..|+++.+   .++.|++++..-
T Consensus        33 l~IL~~l~~~~~~ltl~eia~~lgl----~ksTv~RlL~tL~~~G~v~~~---~~~~Y~LG~~~~   90 (275)
T 3mq0_A           33 VRILDLVAGSPRDLTAAELTRFLDL----PKSSAHGLLAVMTELDLLARS---ADGTLRIGPHSL   90 (275)
T ss_dssp             HHHHHHHHHCSSCEEHHHHHHHHTC----C--CHHHHHHHHHHTTSEEEC---TTSEEEECTHHH
T ss_pred             HHHHHHHhhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC---CCCcEEehHHHH
Confidence            45888898754 7999999999999    999999999999999999984   457899998643

>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}

Probab=96.53  E-value=0.0028  Score=53.75  Aligned_cols=64  Identities=16%  Similarity=0.217  Sum_probs=54.3

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhhc
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS  114 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~~  114 (273)
                      .++.|+..|...++.|+.|||+.+|+    +...+.|.|+.|...|+++..  .+...|.+|+.+..+..
T Consensus       153 ~~~~IL~~L~~~~~~s~~eLA~~lgl----sksTv~r~L~~Le~~GlV~r~--~r~~~~~LT~~G~~l~~  216 (244)
T 2wte_A          153 EEMKLLNVLYETKGTGITELAKMLDK----SEKTLINKIAELKKFGILTQK--GKDRKVELNELGLNVIK  216 (244)
T ss_dssp             HHHHHHHHHHHHTCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE--TTTTEEEECHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe--CCccEEEECHHHHHHHH
Confidence            45567778766679999999999999    999999999999999999975  24578999999876643

>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62

Probab=96.47  E-value=0.0029  Score=43.81  Aligned_cols=43  Identities=26%  Similarity=0.316  Sum_probs=40.4

Q ss_pred             hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        49 lfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      |.+.|.+.|..+++|||+.+++    ++.-++|.|+.|...|++.+.
T Consensus         7 Il~~L~~~g~vsv~eLa~~l~V----S~~TIRrdL~~Le~~G~l~R~   49 (78)
T 1xn7_A            7 VRDLLALRGRMEAAQISQTLNT----PQPMINAMLQQLESMGKAVRI   49 (78)
T ss_dssp             HHHHHHHSCSBCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHcCCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence            6788888899999999999999    999999999999999999874

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=96.47  E-value=0.0032  Score=56.83  Aligned_cols=65  Identities=9%  Similarity=-0.068  Sum_probs=50.9

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC---------------------CCceEEEcccCCC--
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------------------AGVEHVGGNMFES--  252 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~---------------------~ri~~~~gD~f~~--  252 (273)
                      ...+|||+|||+|.+++.++++.|..+++.+|+ |..++.++.+                     ++|+++.+|....  
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~  126 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  126 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence            457899999999999999999999889999998 7777665431                     2388999998762  


Q ss_pred             -CCC-CCEEEe
Q 024046          253 -VPE-GDAILM  261 (273)
Q Consensus       253 -~p~-~D~~~l  261 (273)
                       .+. .|+|++
T Consensus       127 ~~~~~fD~I~l  137 (378)
T 2dul_A          127 ERHRYFHFIDL  137 (378)
T ss_dssp             HSTTCEEEEEE
T ss_pred             hccCCCCEEEe
Confidence             233 388774

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=96.45  E-value=0.0013  Score=52.19  Aligned_cols=58  Identities=12%  Similarity=-0.051  Sum_probs=46.2

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC--CCceEEEcccCC-CC---CCC--CEEEecccc
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFE-SV---PEG--DAILMKVGN  265 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~--~ri~~~~gD~f~-~~---p~~--D~~~l~~vL  265 (273)
                      .....+|||||||.                +.+|. +.+++.|++.  .+++++.+|+.+ +.   +.+  |+|++..+|
T Consensus        10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l   73 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP   73 (176)
T ss_dssp             CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred             CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence            56779999999996                23787 7788877653  469999999987 44   543  999999999


Q ss_pred             ccc
Q 024046          266 FEN  268 (273)
Q Consensus       266 Hd~  268 (273)
                      |+.
T Consensus        74 ~~~   76 (176)
T 2ld4_A           74 GST   76 (176)
T ss_dssp             TCC
T ss_pred             hhc
Confidence            988

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=96.44  E-value=0.0043  Score=53.91  Aligned_cols=59  Identities=19%  Similarity=0.296  Sum_probs=45.0

Q ss_pred             CCCcceEEEecCCc------cHHHHHHHHHCC-CCeEEEeec-hHHHHhCCCCCCceE-EEcccCC-CCCCC-CEEEec
Q 024046          195 FQNVERLVDVGGGF------GVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSYAGVEH-VGGNMFE-SVPEG-DAILMK  262 (273)
Q Consensus       195 ~~~~~~vvDVGGG~------G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~~~ri~~-~~gD~f~-~~p~~-D~~~l~  262 (273)
                      +++..+|||||||+      |.  ..+++..| +.+++++|+ |.       .+++++ +.+|+.+ +.+.. |+|+..
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------v~~v~~~i~gD~~~~~~~~~fD~Vvsn  130 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------VSDADSTLIGDCATVHTANKWDLIISD  130 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------BCSSSEEEESCGGGCCCSSCEEEEEEC
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------CCCCEEEEECccccCCccCcccEEEEc
Confidence            56678999999955      66  45567777 689999998 44       247999 9999998 44443 999974

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=96.43  E-value=0.0017  Score=60.11  Aligned_cols=67  Identities=12%  Similarity=0.065  Sum_probs=53.1

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhCCCC------CCceEEEcccCC-C--CCCC-CEEEe
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S--VPEG-DAILM  261 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~--~p~~-D~~~l  261 (273)
                      .....+|||+|||+|..+..+++..++ .+++.+|+ +..++.++++      .+|+++.+|... +  .+.. |+|++
T Consensus       103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~  181 (456)
T 3m4x_A          103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVV  181 (456)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEE
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEE
Confidence            556789999999999999999998765 68899998 7767666542      579999999876 2  3443 99987

>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}

Probab=96.42  E-value=0.0027  Score=44.88  Aligned_cols=43  Identities=23%  Similarity=0.348  Sum_probs=40.4

Q ss_pred             hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        49 lfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      |.+.|.+.|..+++|||+.+++    ++.-++|.|+.|...|++.+.
T Consensus         7 Il~~L~~~g~vsv~eLA~~l~V----S~~TIRrDL~~Le~~G~l~R~   49 (87)
T 2k02_A            7 VRDMLALQGRMEAKQLSARLQT----PQPLIDAMLERMEAMGKVVRI   49 (87)
T ss_dssp             HHHHHHHSCSEEHHHHHHHTTC----CHHHHHHHHHHHHTTCCSEEE
T ss_pred             HHHHHHHcCCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence            6788888899999999999999    999999999999999999974

>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}

Probab=96.33  E-value=0.017  Score=45.33  Aligned_cols=66  Identities=21%  Similarity=0.256  Sum_probs=52.7

Q ss_pred             HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      ..++.++..|...++.|..+||+.+++    ++..+.++++.|...|++++.....+   -.+.+|+.+..+.
T Consensus        45 ~~~~~iL~~L~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~  113 (168)
T 2nyx_A           45 IPQFRTLVILSNHGPINLATLATLLGV----QPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVV  113 (168)
T ss_dssp             HHHHHHHHHHHHHCSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHH
Confidence            355668888887679999999999999    99999999999999999987421111   2478888887654

>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}

Probab=96.33  E-value=0.0021  Score=46.46  Aligned_cols=66  Identities=18%  Similarity=0.225  Sum_probs=49.1

Q ss_pred             HHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhc
Q 024046           39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS  109 (273)
Q Consensus        39 ~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s  109 (273)
                      .+|....++.|+..|...|+.++.|||+.+|+    ++..+.+.|+.|... ++.....+..-.|++++..
T Consensus        22 ~aL~~~~Rl~IL~~l~~~~~~~~~ela~~l~i----s~stvs~hL~~L~~~-lv~~~~~gr~~~y~l~~~~   87 (99)
T 2zkz_A           22 KTMAHPMRLKIVNELYKHKALNVTQIIQILKL----PQSTVSQHLCKMRGK-VLKRNRQGLEIYYSINNPK   87 (99)
T ss_dssp             HHHCSHHHHHHHHHHHHHSCEEHHHHHHHHTC----CHHHHHHHHHHHBTT-TBEEEEETTEEEEECCCHH
T ss_pred             HHhCCHHHHHHHHHHHHCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHH-hhhheEeCcEEEEEEChHH
Confidence            34445677788855544489999999999999    999999999999999 9985321122357777643

>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}

Probab=96.28  E-value=0.0073  Score=46.08  Aligned_cols=66  Identities=15%  Similarity=0.235  Sum_probs=53.1

Q ss_pred             HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      ..+..++..|...++.|..+||+.+++    ++..+.++++-|...|++++.....+   -.+.+|+.+..+.
T Consensus        31 ~~q~~iL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~   99 (145)
T 3g3z_A           31 YNLFAVLYTLATEGSRTQKHIGEKWSL----PKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYA   99 (145)
T ss_dssp             HHHHHHHHHHHHHCSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHH
Confidence            356668888877789999999999999    99999999999999999997321112   2588898887654

>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A

Probab=96.28  E-value=0.0057  Score=46.72  Aligned_cols=76  Identities=14%  Similarity=0.109  Sum_probs=57.0

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHh-CcCCCCCcchHHHHHHHHhcCCceeccccCC---
Q 024046           24 SYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGG---   99 (273)
Q Consensus        24 ~~~~l~~~~~g~~~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~-g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~---   99 (273)
                      +...+++++.+-|....|.         .|.. |+.++.||++.+ |+    ++..|.+.|+.|...|+|++.....   
T Consensus        15 pi~~~l~~lg~kW~l~IL~---------~L~~-g~~rf~eL~~~l~gI----s~~~Ls~~L~~Le~~GLV~R~~~~~d~r   80 (131)
T 4a5n_A           15 PVEFTLDVIGGKWKGILFY---------HMID-GKKRFNEFRRICPSI----TQRMLTLQLRELEADGIVHREVYHQVPP   80 (131)
T ss_dssp             HHHHHHHHHCSSSHHHHHH---------HHTT-SCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEECSSSC
T ss_pred             cHHHHHHHHcCcCHHHHHH---------HHhc-CCcCHHHHHHHhccc----CHHHHHHHHHHHHHCCCEEEEecCCCCC
Confidence            3455566666666555443         4444 799999999999 99    9999999999999999999743211   


Q ss_pred             CcceecChhchHhh
Q 024046          100 ERLYALNPVSKYFV  113 (273)
Q Consensus       100 ~~~y~lt~~s~~l~  113 (273)
                      .-.|.+|+.++.+.
T Consensus        81 ~v~y~LT~~G~~l~   94 (131)
T 4a5n_A           81 KVEYSLTEFGRTLE   94 (131)
T ss_dssp             EEEEEECTTGGGGH
T ss_pred             eEEEEECHhHHHHH
Confidence            13699999987665

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=96.25  E-value=0.0081  Score=54.21  Aligned_cols=72  Identities=14%  Similarity=0.099  Sum_probs=53.0

Q ss_pred             cceEEEecCCccHHHHHHHHH-----------------CCCCeEEEeechH------------HHHhC-----CCCCC--
Q 024046          198 VERLVDVGGGFGVTLSMITSK-----------------YPQIKAVNFDLPH------------VVQDA-----PSYAG--  241 (273)
Q Consensus       198 ~~~vvDVGGG~G~~~~~l~~~-----------------~P~l~~~~~Dlp~------------v~~~a-----~~~~r--  241 (273)
                      .-+|+|+||++|..+..+...                 .|+++++.-|||.            ..+.+     ...+.  
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f  132 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL  132 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence            678999999999988877766                 5889999999982            11111     11122  


Q ss_pred             ceEEEcccCC-CCCCC--CEEEecccccccC
Q 024046          242 VEHVGGNMFE-SVPEG--DAILMKVGNFENY  269 (273)
Q Consensus       242 i~~~~gD~f~-~~p~~--D~~~l~~vLHd~~  269 (273)
                      +.-++|.|+. .+|..  |+++.+..||=-+
T Consensus       133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls  163 (384)
T 2efj_A          133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLS  163 (384)
T ss_dssp             EEECCSCTTSCCSCTTCEEEEEEESCTTBCS
T ss_pred             EEecchhhhhccCCCCceEEEEecceeeecC
Confidence            4667899998 68875  9999999999544

>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A

Probab=96.21  E-value=0.0034  Score=52.92  Aligned_cols=60  Identities=17%  Similarity=0.228  Sum_probs=50.0

Q ss_pred             hChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHh
Q 024046           47 LGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYF  112 (273)
Q Consensus        47 lglfd~L~~~g-~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l  112 (273)
                      +.|+++|...+ +.|+.|||+.+|+    +...+.|+|+.|...|+++..  ...+.|++++..-.+
T Consensus         9 l~iL~~l~~~~~~~s~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~--~~~~~Y~lg~~~~~l   69 (241)
T 2xrn_A            9 ASIMRALGSHPHGLSLAAIAQLVGL----PRSTVQRIINALEEEFLVEAL--GPAGGFRLGPALGQL   69 (241)
T ss_dssp             HHHHHHHHTCTTCEEHHHHHHHTTS----CHHHHHHHHHHHHTTTSEEEC--GGGCEEEECSHHHHH
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe--CCCCeEEECHHHHHH
Confidence            45788887654 7999999999999    999999999999999999974  234789999865443

>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69

Probab=96.19  E-value=0.006  Score=45.01  Aligned_cols=60  Identities=15%  Similarity=0.164  Sum_probs=47.6

Q ss_pred             hhHHHHhCCCCCHHHHHHHh-CcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           49 VFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        49 lfd~L~~~g~~t~~eLA~~~-g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      |+..|.. |+.+..|||+.+ ++    ++..+.+.|+-|...|+++......+   -.|.+|+.+..+.
T Consensus        27 IL~~L~~-~~~~~~eLa~~l~~i----s~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~~~~   90 (112)
T 1z7u_A           27 LMDELFQ-GTKRNGELMRALDGI----TQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYALY   90 (112)
T ss_dssp             HHHHHHH-SCBCHHHHHHHSTTC----CHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHH
T ss_pred             HHHHHHh-CCCCHHHHHHHhccC----CHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHHHHH
Confidence            4455665 799999999999 99    99999999999999999997432111   2589999887554

>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2

Probab=96.18  E-value=0.0059  Score=51.64  Aligned_cols=58  Identities=14%  Similarity=0.178  Sum_probs=49.4

Q ss_pred             HhChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhch
Q 024046           46 QLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK  110 (273)
Q Consensus        46 elglfd~L~~~g-~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~  110 (273)
                      -+.|++.|...+ +.|+.|||+.+|+    +...+.|+|+.|...|+++..   ..+.|++++..-
T Consensus        10 ~l~iL~~l~~~~~~~~~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~---~~~~Y~lg~~~~   68 (249)
T 1mkm_A           10 AFEILDFIVKNPGDVSVSEIAEKFNM----SVSNAYKYMVVLEEKGFVLRK---KDKRYVPGYKLI   68 (249)
T ss_dssp             HHHHHHHHHHCSSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEC---TTSCEEECTHHH
T ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEC---CCCcEEECHHHH
Confidence            345788887755 7999999999999    999999999999999999973   457899988643

>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A

Probab=96.10  E-value=0.038  Score=42.30  Aligned_cols=64  Identities=14%  Similarity=0.262  Sum_probs=48.9

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccc--cCCC---cceecChhchHhh
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV--SGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~--~~~~---~~y~lt~~s~~l~  113 (273)
                      .+..++..| ..++.|..+||+.+++    ++..+.++++-|...|++++..  ...+   -.+.+|+.+..+.
T Consensus        39 ~q~~iL~~l-~~~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~  107 (151)
T 3kp7_A           39 EQSHVLNML-SIEALTVGQITEKQGV----NKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYI  107 (151)
T ss_dssp             HHHHHHHHH-HHSCBCHHHHHHHHCS----CSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHH
T ss_pred             HHHHHHHHH-HcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHH
Confidence            445588888 6689999999999999    9999999999999999999620  0122   2467788776554

>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A

Probab=96.10  E-value=0.022  Score=43.26  Aligned_cols=65  Identities=8%  Similarity=0.015  Sum_probs=51.3

Q ss_pred             HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      ..++.++..|. .++.|..+||+.+++    ++..+.++++-|...|+++......+   -.+.+|+.+..+.
T Consensus        37 ~~~~~iL~~l~-~~~~~~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~  104 (146)
T 2gxg_A           37 YLDFLVLRATS-DGPKTMAYLANRYFV----TQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETF  104 (146)
T ss_dssp             HHHHHHHHHHT-TSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHh-cCCcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHH
Confidence            35666788888 689999999999999    99999999999999999987421111   2477888776554

>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}

Probab=96.07  E-value=0.0078  Score=45.35  Aligned_cols=66  Identities=17%  Similarity=0.299  Sum_probs=52.1

Q ss_pred             HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      ..++.++..|...++.|..+||+.+++    ++..+.++++-|...|++.......+   -.+.+|+.+..+.
T Consensus        33 ~~~~~iL~~l~~~~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~  101 (139)
T 3bja_A           33 YVQFGVIQVLAKSGKVSMSKLIENMGC----VPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETK  101 (139)
T ss_dssp             HHHHHHHHHHHHSCSEEHHHHHHHCSS----CCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHH
Confidence            355668888887779999999999999    99999999999999999987421111   2477888876654

>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}

Probab=96.07  E-value=0.011  Score=46.09  Aligned_cols=66  Identities=17%  Similarity=0.202  Sum_probs=53.4

Q ss_pred             HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      ..+..++..|...|+.|..+||+.+++    ++..+.++++-|...|++++.....+   -.+.+|+.+..++
T Consensus        46 ~~q~~iL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~  114 (162)
T 3k0l_A           46 LPQFTALSVLAAKPNLSNAKLAERSFI----KPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKL  114 (162)
T ss_dssp             HHHHHHHHHHHHCTTCCHHHHHHHHTS----CGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHH
Confidence            345668888888789999999999999    99999999999999999997432112   2588888887655

>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69

Probab=96.06  E-value=0.0073  Score=46.02  Aligned_cols=63  Identities=14%  Similarity=0.170  Sum_probs=49.3

Q ss_pred             HhChhHHHHhCCCCCHHHHHHHh-CcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           46 QLGVFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        46 elglfd~L~~~g~~t~~eLA~~~-g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      ++.|+..|.. |+.++.||++.+ |+    ++..+.+.|+.|...|+|++.....+   -.|.+|+.+..+.
T Consensus        37 ~l~IL~~L~~-g~~~~~eLa~~l~gi----s~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~  103 (131)
T 1yyv_A           37 GVLILVALRD-GTHRFSDLRRXMGGV----SEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVS  103 (131)
T ss_dssp             HHHHHHHGGG-CCEEHHHHHHHSTTC----CHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHc-CCCCHHHHHHHhccC----CHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccHHHHH
Confidence            3445556664 799999999999 79    99999999999999999997422111   2699999887654

>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28

Probab=96.05  E-value=0.008  Score=45.33  Aligned_cols=65  Identities=23%  Similarity=0.154  Sum_probs=51.3

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      .++.++..|...++.|..+||+.+++    ++..+.++++-|...|+++......+   -.+.+|+.+..+.
T Consensus        35 ~~~~iL~~l~~~~~~~~~~la~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~  102 (138)
T 1jgs_A           35 AQFKVLCSIRCAACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAIC  102 (138)
T ss_dssp             HHHHHHHHHHHHSSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHH
Confidence            45557777877679999999999999    99999999999999999997421112   2478888877654

>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}

Probab=96.04  E-value=0.005  Score=42.49  Aligned_cols=44  Identities=18%  Similarity=0.179  Sum_probs=38.9

Q ss_pred             ChhHHHHhC------CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           48 GVFEIIAKA------GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        48 glfd~L~~~------g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      .|++.|.+.      +|.|+.|||+.+|+    ++..+++-|..|...|++...
T Consensus         8 ~IL~~I~~~i~~~~g~~psv~EIa~~lgv----S~~TVrr~L~~Le~kG~I~R~   57 (77)
T 2jt1_A            8 KIISIVQERQNMDDGAPVKTRDIADAAGL----SIYQVRLYLEQLHDVGVLEKV   57 (77)
T ss_dssp             HHHHHHHHHHHHHTTSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHhhccCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEec
Confidence            366667665      59999999999999    999999999999999999974

>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*

Probab=96.03  E-value=0.0075  Score=45.44  Aligned_cols=66  Identities=14%  Similarity=0.158  Sum_probs=51.4

Q ss_pred             HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      ..++.++..|...++.|..+||+.+++    ++..+.++++-|...|+++......+   -.+.+|+.+..+.
T Consensus        29 ~~~~~iL~~l~~~~~~~~~ela~~l~~----s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~   97 (138)
T 3bpv_A           29 DAQVACLLRIHREPGIKQDELATFFHV----DKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEII   97 (138)
T ss_dssp             HHHHHHHHHHHHSTTCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHH
Confidence            345567778877679999999999999    99999999999999999997321111   2377888776554

>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}

Probab=96.02  E-value=0.025  Score=43.47  Aligned_cols=65  Identities=12%  Similarity=0.097  Sum_probs=52.2

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec--cccCCC---cceecChhchHhh
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC--SVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~--~~~~~~---~~y~lt~~s~~l~  113 (273)
                      .++.++..|...++.|..+||+.+++    ++..+.++++-|...|++++  .....+   -.+.+|+.+..+.
T Consensus        42 ~~~~iL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~  111 (154)
T 2qww_A           42 QQLAMINVIYSTPGISVADLTKRLII----TGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLS  111 (154)
T ss_dssp             HHHHHHHHHHHSTTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHH
Confidence            45668888887779999999999999    99999999999999999997  211122   2588888887654

>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}

Probab=96.01  E-value=0.0051  Score=42.64  Aligned_cols=47  Identities=15%  Similarity=0.264  Sum_probs=41.6

Q ss_pred             HHhChhHHHHhC--CCCCHHHHHHHh-----CcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           45 IQLGVFEIIAKA--GELSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        45 ~elglfd~L~~~--g~~t~~eLA~~~-----g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      -+..|++.|.+.  ++.|++||++.+     ++    +..-+.|.|+.|+..|++.+.
T Consensus        18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~i----s~~TVyR~L~~L~~~Glv~~~   71 (83)
T 2fu4_A           18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEI----GLATVYRVLNQFDDAGIVTRH   71 (83)
T ss_dssp             HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCeEEE
Confidence            456688888764  589999999999     88    999999999999999999975

>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}

Probab=95.99  E-value=0.0088  Score=45.75  Aligned_cols=66  Identities=12%  Similarity=0.193  Sum_probs=51.7

Q ss_pred             HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccC---CCcceecChhchHhh
Q 024046           44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFV  113 (273)
Q Consensus        44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~---~~~~y~lt~~s~~l~  113 (273)
                      ..++.++..|...|+.|..+||+.+++    ++..+.++++-|...|+++.....   +...+.+|+.+..+.
T Consensus        40 ~~~~~iL~~l~~~~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~  108 (148)
T 3nrv_A           40 MTEWRIISVLSSASDCSVQKISDILGL----DKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELY  108 (148)
T ss_dssp             HHHHHHHHHHHHSSSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHH
Confidence            456678888888789999999999999    999999999999999999974211   123577888776654

>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69

Probab=95.99  E-value=0.0064  Score=44.43  Aligned_cols=75  Identities=16%  Similarity=0.196  Sum_probs=54.1

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHh-CcCCCCCcchHHHHHHHHhcCCceeccccCCC---
Q 024046           25 YSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---  100 (273)
Q Consensus        25 ~~~l~~~~~g~~~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~-g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---  100 (273)
                      ...+++++.+.+...         |+..|.. |+.++.||++.+ |+    ++..+.+.|+.|...|++++.....+   
T Consensus        15 ~~~~l~~l~~~~~~~---------IL~~L~~-~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~~~~d~r~   80 (107)
T 2fsw_A           15 VRKSMQIFAGKWTLL---------IIFQINR-RIIRYGELKRAIPGI----SEKMLIDELKFLCGKGLIKKKQYPEVPPR   80 (107)
T ss_dssp             HHHHHHHHTSSSHHH---------HHHHHTT-SCEEHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEECSSSCE
T ss_pred             HHHHHHHHcCccHHH---------HHHHHHh-CCcCHHHHHHHcccC----CHHHHHHHHHHHHHCCCEEEeecCCCCCe
Confidence            445555555555443         3445553 799999999999 59    99999999999999999997422111   


Q ss_pred             cceecChhchHhh
Q 024046          101 RLYALNPVSKYFV  113 (273)
Q Consensus       101 ~~y~lt~~s~~l~  113 (273)
                      -.|.+|+.++.+.
T Consensus        81 ~~y~LT~~G~~l~   93 (107)
T 2fsw_A           81 VEYSLTPLGEKVL   93 (107)
T ss_dssp             EEEEECHHHHTTH
T ss_pred             eEEEECccHHHHH
Confidence            3599999886544

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=95.98  E-value=0.0036  Score=56.76  Aligned_cols=66  Identities=14%  Similarity=-0.013  Sum_probs=51.8

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhCCCC-------CC-ceEEEcccCCC----CCCC-CEEE
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY-------AG-VEHVGGNMFES----VPEG-DAIL  260 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~~-------~r-i~~~~gD~f~~----~p~~-D~~~  260 (273)
                      .+..+|||++||+|.+++.++++.+. .+++.+|+ |..++.++++       ++ ++++.+|.++-    .+.. |+|+
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~  130 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD  130 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence            35689999999999999999998766 46899998 8877776542       45 99999998762    2333 8887


Q ss_pred             e
Q 024046          261 M  261 (273)
Q Consensus       261 l  261 (273)
                      +
T Consensus       131 l  131 (392)
T 3axs_A          131 L  131 (392)
T ss_dssp             E
T ss_pred             E
Confidence            6

>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69

Probab=95.98  E-value=0.0083  Score=46.54  Aligned_cols=60  Identities=22%  Similarity=0.214  Sum_probs=46.9

Q ss_pred             hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCC--CcceecChhchHhh
Q 024046           49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGG--ERLYALNPVSKYFV  113 (273)
Q Consensus        49 lfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~--~~~y~lt~~s~~l~  113 (273)
                      |+..|.. |+.++.||++.+|+    ++..+.+.|+.|...|++++.....  .-.|.+|+.+..+.
T Consensus        29 IL~~L~~-g~~~~~eLa~~lgi----s~~tls~~L~~Le~~GlI~r~~~~~d~~~~y~LT~~G~~l~   90 (146)
T 2f2e_A           29 IVRDAFE-GLTRFGEFQKSLGL----AKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRALF   90 (146)
T ss_dssp             HHHHHHT-TCCSHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHTTH
T ss_pred             HHHHHHh-CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEECchHHHHH
Confidence            3445544 79999999999999    9999999999999999999742101  23689999876543

>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}

Probab=95.97  E-value=0.0026  Score=54.37  Aligned_cols=58  Identities=17%  Similarity=0.229  Sum_probs=48.7

Q ss_pred             hChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhch
Q 024046           47 LGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK  110 (273)
Q Consensus        47 lglfd~L~~~-g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~  110 (273)
                      +.|+++|... ++.|+.|||+.+|+    +..-+.|+|.-|+..|+++.+  ...+.|++++..-
T Consensus         9 l~IL~~l~~~~~~lsl~eia~~lgl----~ksT~~RlL~tL~~~G~v~~~--~~~~~Y~lG~~~~   67 (260)
T 3r4k_A            9 LTLLTYFNHGRLEIGLSDLTRLSGM----NKATVYRLMSELQEAGFVEQV--EGARSYRLGPQVL   67 (260)
T ss_dssp             HHHHTTCBTTBSEEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEEC--SSSSEEEECTTHH
T ss_pred             HHHHHHHhhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEc--CCCCcEEcCHHHH
Confidence            4577777753 58999999999999    999999999999999999985  2338999998643

>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}

Probab=95.96  E-value=0.0071  Score=45.62  Aligned_cols=66  Identities=11%  Similarity=0.175  Sum_probs=52.3

Q ss_pred             HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      ..++.++..|...++.|..+||+.+++    ++..+.++++-|...|+++......+   -.+.+|+.+..+.
T Consensus        38 ~~~~~iL~~l~~~~~~t~~ela~~l~~----~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~  106 (140)
T 2nnn_A           38 PTQWAALVRLGETGPCPQNQLGRLTAM----DAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAEL  106 (140)
T ss_dssp             HHHHHHHHHHHHHSSBCHHHHHHHTTC----CHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHH
Confidence            346668888877679999999999999    99999999999999999997421111   2478888876554

>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}

Probab=95.96  E-value=0.0067  Score=46.19  Aligned_cols=66  Identities=20%  Similarity=0.203  Sum_probs=52.6

Q ss_pred             HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecccc---CCCcceecChhchHhh
Q 024046           44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS---GGERLYALNPVSKYFV  113 (273)
Q Consensus        44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~---~~~~~y~lt~~s~~l~  113 (273)
                      ..+..++..|...|+.|..+||+.+++    ++..+.++++-|...|++++...   .+.-.+.+|+.+..+.
T Consensus        37 ~~~~~iL~~l~~~~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~  105 (143)
T 3oop_A           37 PEQWSVLEGIEANEPISQKEIALWTKK----DTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKET  105 (143)
T ss_dssp             HHHHHHHHHHHHHSSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHH
Confidence            455667888877689999999999999    99999999999999999997421   1123578888887654

>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}

Probab=95.94  E-value=0.018  Score=44.73  Aligned_cols=65  Identities=17%  Similarity=0.219  Sum_probs=50.4

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecccc---CCCcceecChhchHhh
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS---GGERLYALNPVSKYFV  113 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~---~~~~~y~lt~~s~~l~  113 (273)
                      .++.++..|...++.|..+||+.+++    ++..+.++++-|...|++++...   .+...+.+|+.+..+.
T Consensus        50 ~~~~iL~~l~~~~~~t~~ela~~l~i----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~  117 (162)
T 2fa5_A           50 PEWRVITILALYPGSSASEVSDRTAM----DKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVY  117 (162)
T ss_dssp             HHHHHHHHHHHSTTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHH
Confidence            45568888887779999999999999    99999999999999999997321   0113577888776554

>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}

Probab=95.93  E-value=0.023  Score=43.13  Aligned_cols=65  Identities=8%  Similarity=0.167  Sum_probs=52.0

Q ss_pred             HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCc---ceecChhchHhh
Q 024046           44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV  113 (273)
Q Consensus        44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~---~y~lt~~s~~l~  113 (273)
                      ..++.++..|...++ |..+||+.+++    ++..+.++++-|...|++++.....+.   .+.+|+.+..+.
T Consensus        37 ~~~~~iL~~l~~~~~-~~~~la~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~  104 (144)
T 3f3x_A           37 YLDFSILKATSEEPR-SMVYLANRYFV----TQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVL  104 (144)
T ss_dssp             HHHHHHHHHHHHSCE-EHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHHCCC-CHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHH
Confidence            356678888888666 99999999999    999999999999999999974211111   488898887654

>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28

Probab=95.91  E-value=0.014  Score=44.43  Aligned_cols=67  Identities=19%  Similarity=0.197  Sum_probs=52.9

Q ss_pred             HHHHhChhHHHHh-CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccC---CCcceecChhchHhh
Q 024046           43 AAIQLGVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFV  113 (273)
Q Consensus        43 ~a~elglfd~L~~-~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~---~~~~y~lt~~s~~l~  113 (273)
                      +..++.++..|.. .++.|..+||+.+|+    ++..+.++++-|...|+++.....   +.-.+.+|+.+..+.
T Consensus        34 ~~~~~~iL~~l~~~~~~~~~~~la~~l~i----~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~  104 (147)
T 2hr3_A           34 QFSQLVVLGAIDRLGGDVTPSELAAAERM----RSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNL  104 (147)
T ss_dssp             HHHHHHHHHHHHHTTSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHH
Confidence            3456778888887 689999999999999    999999999999999999874211   112477888876554

>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}

Probab=95.90  E-value=0.0097  Score=45.56  Aligned_cols=65  Identities=9%  Similarity=0.109  Sum_probs=51.2

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      .++.++..|...|+.|..+||+.+++    ++..+.++++-|...|++.......+   -.+.+|+.+..+.
T Consensus        43 ~~~~iL~~l~~~~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~  110 (150)
T 2rdp_A           43 PQFVALQWLLEEGDLTVGELSNKMYL----ACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERII  110 (150)
T ss_dssp             HHHHHHHHHHHHCSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHH
Confidence            45567888877679999999999999    99999999999999999987421111   2477888776554

>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}

Probab=95.84  E-value=0.023  Score=43.64  Aligned_cols=66  Identities=14%  Similarity=0.049  Sum_probs=51.3

Q ss_pred             HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccC---CCcceecChhchHhh
Q 024046           44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFV  113 (273)
Q Consensus        44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~---~~~~y~lt~~s~~l~  113 (273)
                      ..+..++..|...++.|..+||+.+++    ++..+.++++-|...|++++....   +.-.+.+|+.+..+.
T Consensus        41 ~~q~~iL~~l~~~~~~~~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~  109 (149)
T 4hbl_A           41 YSQYLVMLTLWEENPQTLNSIGRHLDL----SSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQ  109 (149)
T ss_dssp             HHHHHHHHHHHHSSSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHH
Confidence            356668888887789999999999999    999999999999999999974211   112577888776554

>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28

Probab=95.83  E-value=0.034  Score=42.67  Aligned_cols=64  Identities=20%  Similarity=0.225  Sum_probs=50.5

Q ss_pred             HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        46 elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      ++.|+..|...++.|..+||+.+++    ++..+.++++-|...|+++......+   -.+.+|+.+..+.
T Consensus        39 ~~~iL~~l~~~~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~  105 (155)
T 1s3j_A           39 QLFVLASLKKHGSLKVSEIAERMEV----KPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKF  105 (155)
T ss_dssp             HHHHHHHHHHHSEEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHH
Confidence            4557888877679999999999999    99999999999999999987421111   2477888776554

>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28

Probab=95.80  E-value=0.011  Score=44.81  Aligned_cols=65  Identities=9%  Similarity=0.021  Sum_probs=51.1

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      .++.++..|...++.|..+||+.+++    ++..+.++++-|...|++.......+   -.+.+|+.+..+.
T Consensus        30 ~~~~iL~~l~~~~~~t~~~la~~l~~----s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~   97 (144)
T 1lj9_A           30 GQYLYLVRVCENPGIIQEKIAELIKV----DRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVY   97 (144)
T ss_dssp             THHHHHHHHHHSTTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHCcCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHH
Confidence            34557778877678999999999999    99999999999999999997421111   2477888876554

>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}

Probab=95.79  E-value=0.029  Score=43.61  Aligned_cols=65  Identities=20%  Similarity=0.195  Sum_probs=52.0

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccC---CCcceecChhchHhh
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFV  113 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~---~~~~y~lt~~s~~l~  113 (273)
                      .++.++..|...|+.|..+||+.+++    ++..+.++++-|...|++++....   +.-.+.+|+.+..+.
T Consensus        54 ~q~~vL~~l~~~~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~  121 (161)
T 3e6m_A           54 PKLRLLSSLSAYGELTVGQLATLGVM----EQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKL  121 (161)
T ss_dssp             HHHHHHHHHHHHSEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHH
Confidence            45568888887689999999999999    999999999999999999974211   113578888887654

>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}

Probab=95.76  E-value=0.012  Score=45.43  Aligned_cols=65  Identities=6%  Similarity=0.058  Sum_probs=51.4

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccC---CCcceecChhchHhh
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFV  113 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~---~~~~y~lt~~s~~l~  113 (273)
                      .++.++..|...|+.|..+||+.+++    +...+.++++-|...|++++....   +.-.+.+|+.+..+.
T Consensus        44 ~~~~iL~~l~~~~~~t~~ela~~l~i----~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~  111 (155)
T 3cdh_A           44 PEWRVLACLVDNDAMMITRLAKLSLM----EQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALA  111 (155)
T ss_dssp             HHHHHHHHHSSCSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHH
T ss_pred             HHHHHHHHHHHCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHH
Confidence            45567888877679999999999999    999999999999999999963211   113478888877654

>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}

Probab=95.72  E-value=0.02  Score=44.33  Aligned_cols=57  Identities=21%  Similarity=0.259  Sum_probs=46.8

Q ss_pred             hHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhh
Q 024046           50 FEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV  113 (273)
Q Consensus        50 fd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~  113 (273)
                      ...|...|+.|..+||+.+|+    +...+.+.++.|...|+++..   .+..+.+|+.+..+.
T Consensus        46 ~~~l~~~~~~~~~~la~~l~v----s~~tvs~~l~~Le~~Glv~r~---~~~~~~lT~~g~~~~  102 (155)
T 2h09_A           46 SDLIREVGEARQVDMAARLGV----SQPTVAKMLKRLATMGLIEMI---PWRGVFLTAEGEKLA  102 (155)
T ss_dssp             HHHHHHHSCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTCEEEE---TTTEEEECHHHHHHH
T ss_pred             HHHHHhCCCcCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEe---cCCceEEChhHHHHH
Confidence            335555468999999999999    999999999999999999873   345688898876554

>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}

Probab=95.71  E-value=0.012  Score=44.45  Aligned_cols=46  Identities=17%  Similarity=0.184  Sum_probs=37.7

Q ss_pred             CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecCh
Q 024046           57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP  107 (273)
Q Consensus        57 g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~  107 (273)
                      ++.|..+||+.+|+    ++..++++|..|...|+++...+ ..|.|.++.
T Consensus        25 ~~~s~~ela~~~~i----~~~~v~~il~~L~~~Glv~~~~g-~~ggy~L~~   70 (129)
T 2y75_A           25 GPTSLKSIAQTNNL----SEHYLEQLVSPLRNAGLVKSIRG-AYGGYVLGS   70 (129)
T ss_dssp             CCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEC-----CCEEESS
T ss_pred             CcCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEecCC-CCCceEeCC
Confidence            48999999999999    99999999999999999986421 236687765

>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28

Probab=95.70  E-value=0.015  Score=44.04  Aligned_cols=65  Identities=15%  Similarity=0.162  Sum_probs=50.0

Q ss_pred             HHhChhHHH-HhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccC---CCcceecChhchHhh
Q 024046           45 IQLGVFEII-AKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFV  113 (273)
Q Consensus        45 ~elglfd~L-~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~---~~~~y~lt~~s~~l~  113 (273)
                      .++.++..| ...++.|..+||+.+++    ++..+.++++-|...|+++.....   ..-.+.+|+.+..+.
T Consensus        38 ~~~~iL~~l~~~~~~~t~~~la~~l~~----s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~  106 (146)
T 2fbh_A           38 ARWLVLLHLARHRDSPTQRELAQSVGV----EGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLI  106 (146)
T ss_dssp             THHHHHHHHHHCSSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHH
Confidence            345577888 65579999999999999    999999999999999999974211   112477777776544

>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28

Probab=95.66  E-value=0.012  Score=44.69  Aligned_cols=66  Identities=12%  Similarity=0.168  Sum_probs=52.4

Q ss_pred             HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      ..++.++..|...|+.|..+||+.+++    ++..+.++++-|...|+++......+   -.+.+|+.+..+.
T Consensus        33 ~~~~~iL~~l~~~~~~~~~~la~~l~~----s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~  101 (145)
T 2a61_A           33 PAQFDILQKIYFEGPKRPGELSVLLGV----AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVI  101 (145)
T ss_dssp             HHHHHHHHHHHHHCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHH
Confidence            356667888877679999999999999    99999999999999999997421111   2478888877654

>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48

Probab=95.65  E-value=0.011  Score=41.99  Aligned_cols=61  Identities=13%  Similarity=0.074  Sum_probs=47.8

Q ss_pred             hhHHHHhCC-CCCHHHHHHHhCcCCCCCcch-HHHHHHHHhcCCceecccc-CCCcceecChhchHhh
Q 024046           49 VFEIIAKAG-ELSAPEIAAQLQAQNVKAPMM-LDRMLRLLVSHRVLECSVS-GGERLYALNPVSKYFV  113 (273)
Q Consensus        49 lfd~L~~~g-~~t~~eLA~~~g~~~~~~~~~-l~rlL~~L~~~gll~~~~~-~~~~~y~lt~~s~~l~  113 (273)
                      ++..|...| +.|..|||+.+++    ++.. +.++++-|...|++..+.. .....+.+|+.+..+.
T Consensus        20 ~L~~l~~~~~~~t~~eLa~~l~i----s~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G~~~~   83 (95)
T 2pg4_A           20 TLLEFEKKGYEPSLAEIVKASGV----SEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRRLA   83 (95)
T ss_dssp             HHHHHHHTTCCCCHHHHHHHHCC----CHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHHHHHH
T ss_pred             HHHHHHhcCCCCCHHHHHHHHCC----CchHHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhHHHHH
Confidence            455666666 8999999999999    9999 9999999999999984211 1223578899887654

>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}

Probab=95.64  E-value=0.011  Score=43.84  Aligned_cols=48  Identities=15%  Similarity=0.259  Sum_probs=42.9

Q ss_pred             HHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           43 AAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        43 ~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      ...++.|+..|.+ ++.|+.+||+.+|+    ++..+.+.|+.|...|++...
T Consensus        31 ~~~~~~il~~L~~-~~~s~~ela~~l~i----s~stvsr~l~~Le~~Glv~~~   78 (119)
T 2lkp_A           31 TPSRLMILTQLRN-GPLPVTDLAEAIGM----EQSAVSHQLRVLRNLGLVVGD   78 (119)
T ss_dssp             CHHHHHHHHHHHH-CCCCHHHHHHHHSS----CHHHHHHHHHHHHHHCSEEEE
T ss_pred             CHHHHHHHHHHHH-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence            3467778888887 79999999999999    999999999999999999863

>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}

Probab=95.61  E-value=0.015  Score=44.60  Aligned_cols=65  Identities=20%  Similarity=0.277  Sum_probs=51.7

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccC---CCcceecChhchHhh
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFV  113 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~---~~~~y~lt~~s~~l~  113 (273)
                      .++.++..|...++.|..+||+.+++    ++..+.++++-|...|++++....   ..-.+.+|+.+..+.
T Consensus        41 ~~~~iL~~l~~~~~~t~~ela~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~  108 (152)
T 3bj6_A           41 GQRAILEGLSLTPGATAPQLGAALQM----KRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAII  108 (152)
T ss_dssp             HHHHHHHHHHHSTTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHH
Confidence            45667888887779999999999999    999999999999999999974211   112577888776554

>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}

Probab=95.60  E-value=0.0079  Score=51.14  Aligned_cols=59  Identities=15%  Similarity=0.119  Sum_probs=49.3

Q ss_pred             hChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhh
Q 024046           47 LGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV  113 (273)
Q Consensus        47 lglfd~L~~~-g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~  113 (273)
                      +.|+++|... ++.|+.|||+.+|+    +...+.|+|..|...|+++.+    ++.|++++....+.
T Consensus        17 l~iL~~l~~~~~~~~~~eia~~~gl----~~stv~r~l~~L~~~G~v~~~----~~~Y~Lg~~~~~l~   76 (257)
T 2g7u_A           17 FAVLLAFDAQRPNPTLAELATEAGL----SRPAVRRILLTLQKLGYVAGS----GGRWSLTPRVLSIG   76 (257)
T ss_dssp             HHHHHTCSSSCSSCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----TTEEEECGGGHHHH
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC----CCEEEEcHHHHHHH
Confidence            4567777653 48999999999999    999999999999999999973    48899998765443

>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A

Probab=95.59  E-value=0.0068  Score=46.13  Aligned_cols=65  Identities=12%  Similarity=0.069  Sum_probs=51.0

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccC---CCcceecChhchHhh
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFV  113 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~---~~~~y~lt~~s~~l~  113 (273)
                      .+..++..|...++.|..+||+.+++    ++..+.++++-|...|++++....   +.-.+.+|+.++.+.
T Consensus        37 ~q~~vL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~  104 (140)
T 3hsr_A           37 TGYIVLMAIENDEKLNIKKLGERVFL----DSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIK  104 (140)
T ss_dssp             HHHHHHHHSCTTCEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTH
T ss_pred             HHHHHHHHHHHcCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHH
Confidence            45557777776679999999999999    999999999999999999974211   123578888887654

>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A

Probab=95.59  E-value=0.016  Score=41.49  Aligned_cols=62  Identities=15%  Similarity=0.245  Sum_probs=51.9

Q ss_pred             HHhChhHHHHhCCCCCHHHHHH-HhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhhc
Q 024046           45 IQLGVFEIIAKAGELSAPEIAA-QLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS  114 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~-~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~~  114 (273)
                      .++.|+-.|...++.|+.+||+ ..++    +...+.|-++.|...|+++.   .+++ +.+|+.++.++.
T Consensus        17 ~QfsiL~~L~~~~~~t~~~Lae~~l~~----drstvsrnl~~L~r~GlVe~---~~~D-l~LT~~G~~~l~   79 (95)
T 1bja_A           17 KTATILITIAKKDFITAAEVREVHPDL----GNAVVNSNIGVLIKKGLVEK---SGDG-LIITGEAQDIIS   79 (95)
T ss_dssp             HHHHHHHHHHHSTTBCHHHHHHTCTTS----CHHHHHHHHHHHHTTTSEEE---ETTE-EEECHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHhcc----cHHHHHHHHHHHHHCCCeec---CCCC-eeeCHhHHHHHH
Confidence            3456777888878999999999 9999    99999999999999999983   2444 889999876653

>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28

Probab=95.58  E-value=0.016  Score=44.70  Aligned_cols=66  Identities=17%  Similarity=0.109  Sum_probs=52.5

Q ss_pred             HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccC---CCcceecChhchHhh
Q 024046           44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFV  113 (273)
Q Consensus        44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~---~~~~y~lt~~s~~l~  113 (273)
                      ..++.++..|...++.|..+||+.+++    +...+.++++.|...|++++....   ..-.+.+|+.+..+.
T Consensus        44 ~~~~~iL~~l~~~~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~  112 (154)
T 2eth_A           44 TTELYAFLYVALFGPKKMKEIAEFLST----TKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIF  112 (154)
T ss_dssp             HHHHHHHHHHHHHCCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHH
Confidence            456678888877679999999999999    999999999999999999874211   112477888876654

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=95.57  E-value=0.015  Score=52.02  Aligned_cols=74  Identities=16%  Similarity=0.202  Sum_probs=52.2

Q ss_pred             CCcceEEEecCCccHHHHHHHHH----------------CCCCeEEEeechH-----HHHhCCC----CCC--ceEEEcc
Q 024046          196 QNVERLVDVGGGFGVTLSMITSK----------------YPQIKAVNFDLPH-----VVQDAPS----YAG--VEHVGGN  248 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~----------------~P~l~~~~~Dlp~-----v~~~a~~----~~r--i~~~~gD  248 (273)
                      ++.-+|+|+||++|..+..+...                .|++.++.-|||.     +-.....    .+.  +.-++|.
T Consensus        50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS  129 (359)
T 1m6e_X           50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS  129 (359)
T ss_dssp             SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred             CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence            45678999999999755543332                6888889999976     2222211    111  4678899


Q ss_pred             cCC-CCCCC--CEEEecccccccC
Q 024046          249 MFE-SVPEG--DAILMKVGNFENY  269 (273)
Q Consensus       249 ~f~-~~p~~--D~~~l~~vLHd~~  269 (273)
                      |+. .+|..  |+++-+..||=-+
T Consensus       130 Fy~rlfp~~S~d~v~Ss~aLHWls  153 (359)
T 1m6e_X          130 FYGRLFPRNTLHFIHSSYSLMWLS  153 (359)
T ss_dssp             SSSCCSCTTCBSCEEEESCTTBCS
T ss_pred             hhhccCCCCceEEEEehhhhhhcc
Confidence            998 68875  9999999999544

>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28

Probab=95.57  E-value=0.01  Score=44.91  Aligned_cols=66  Identities=15%  Similarity=0.129  Sum_probs=52.1

Q ss_pred             HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      ..++.++..|...++.|..+||+.+++    ++..+.++++-|...|+++......+   -.+.+|+.+..+.
T Consensus        36 ~~~~~iL~~l~~~~~~t~~ela~~l~~----s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~  104 (142)
T 2fbi_A           36 EQQWRVIRILRQQGEMESYQLANQACI----LRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCF  104 (142)
T ss_dssp             HHHHHHHHHHHHHCSEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHH
Confidence            356668888877679999999999999    99999999999999999987421111   2477888776654

>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0

Probab=95.52  E-value=0.014  Score=44.06  Aligned_cols=65  Identities=18%  Similarity=0.155  Sum_probs=51.7

Q ss_pred             HHhChhHHHHhCC--CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCC---CcceecChhchHhh
Q 024046           45 IQLGVFEIIAKAG--ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGG---ERLYALNPVSKYFV  113 (273)
Q Consensus        45 ~elglfd~L~~~g--~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~---~~~y~lt~~s~~l~  113 (273)
                      .+..++..|...+  +.|..+||+.+++    ++..+.++++-|...|++++.....   .-.+.+|+.+..+.
T Consensus        32 ~~~~vL~~l~~~~~~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~  101 (139)
T 3eco_A           32 EQGHTLGYLYAHQQDGLTQNDIAKALQR----TGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLV  101 (139)
T ss_dssp             HHHHHHHHHHHSTTTCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHH
Confidence            4566778887765  8999999999999    9999999999999999999742111   12577888877654

>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}

Probab=95.50  E-value=0.015  Score=45.15  Aligned_cols=66  Identities=14%  Similarity=0.153  Sum_probs=52.6

Q ss_pred             HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecccc---CCCcceecChhchHhh
Q 024046           44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS---GGERLYALNPVSKYFV  113 (273)
Q Consensus        44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~---~~~~~y~lt~~s~~l~  113 (273)
                      ..++.|+..|...++.|..+||+.+++    +...+.++++-|...|+++....   ...-.+.+|+.+..+.
T Consensus        52 ~~~~~iL~~l~~~~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~  120 (162)
T 3cjn_A           52 TAKMRALAILSAKDGLPIGTLGIFAVV----EQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVY  120 (162)
T ss_dssp             HHHHHHHHHHHHSCSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence            356668888887779999999999999    99999999999999999987421   1113477888776554

>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}

Probab=95.49  E-value=0.02  Score=43.48  Aligned_cols=50  Identities=12%  Similarity=0.027  Sum_probs=43.4

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhh
Q 024046           56 AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV  113 (273)
Q Consensus        56 ~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~  113 (273)
                      .++.|+.+||+.+|+    +...+.+.++.|...|+++..   . ..|.+|+.+..+.
T Consensus        29 ~~~~s~~ela~~l~i----s~~tv~~~l~~Le~~Gli~r~---~-~~~~Lt~~g~~~~   78 (139)
T 2x4h_A           29 GEGAKINRIAKDLKI----APSSVFEEVSHLEEKGLVKKK---E-DGVWITNNGTRSI   78 (139)
T ss_dssp             TSCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---T-TEEEECHHHHHHH
T ss_pred             CCCcCHHHHHHHhCC----ChHHHHHHHHHHHHCCCEEec---C-CeEEEChhHHHHH
Confidence            358999999999999    999999999999999999973   3 6788999876543

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=95.48  E-value=0.022  Score=47.72  Aligned_cols=78  Identities=17%  Similarity=0.205  Sum_probs=54.2

Q ss_pred             hhHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHh----CCC--CCCceEEEc-ccCCCCCC
Q 024046          183 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQD----APS--YAGVEHVGG-NMFESVPE  255 (273)
Q Consensus       183 ~~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~----a~~--~~ri~~~~g-D~f~~~p~  255 (273)
                      +....+.+.+- +....+|||+||+.|.++--.+....-.+++.+|+-..--.    .+.  -+-|+|..+ |+|.--|.
T Consensus        65 ~KL~ei~ek~~-l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~  143 (267)
T 3p8z_A           65 AKLQWFVERNM-VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPE  143 (267)
T ss_dssp             HHHHHHHHTTS-SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCC
T ss_pred             HHHHHHHHhcC-CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCc
Confidence            33456666664 77777999999999999997777776667899998221111    011  177999999 98762222


Q ss_pred             -CCEEEe
Q 024046          256 -GDAILM  261 (273)
Q Consensus       256 -~D~~~l  261 (273)
                       .|++++
T Consensus       144 ~~Dtllc  150 (267)
T 3p8z_A          144 KCDTLLC  150 (267)
T ss_dssp             CCSEEEE
T ss_pred             cccEEEE
Confidence             588776

>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}

Probab=95.48  E-value=0.014  Score=45.40  Aligned_cols=64  Identities=11%  Similarity=0.058  Sum_probs=50.7

Q ss_pred             HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        46 elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      +..++..|...++.|..+||+.+++    ++..+.++++-|...|++++.....+   -.+.+|+.+..+.
T Consensus        52 q~~vL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~  118 (159)
T 3s2w_A           52 QFPFLMRLYREDGINQESLSDYLKI----DKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLE  118 (159)
T ss_dssp             THHHHHHHHHSCSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHH
Confidence            4457778877789999999999999    99999999999999999997421111   2577888877654

>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28

Probab=95.45  E-value=0.015  Score=44.14  Aligned_cols=66  Identities=12%  Similarity=0.117  Sum_probs=52.4

Q ss_pred             HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      ..++.++..|...++.|..+||+.+++    ++..+.+.++.|...|+++......+   -.+.+|+.+..+.
T Consensus        37 ~~~~~iL~~l~~~~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~  105 (142)
T 2bv6_A           37 YPQFLVLTILWDESPVNVKKVVTELAL----DTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIR  105 (142)
T ss_dssp             HHHHHHHHHHHHSSEEEHHHHHHHTTC----CTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHH
Confidence            356668888887779999999999999    99999999999999999987421111   2577888876554

>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}

Probab=95.44  E-value=0.0087  Score=51.00  Aligned_cols=57  Identities=16%  Similarity=0.268  Sum_probs=46.9

Q ss_pred             hChhHHHHh-CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhch
Q 024046           47 LGVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK  110 (273)
Q Consensus        47 lglfd~L~~-~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~  110 (273)
                      +.|+++|.. .++.|+.|||+.+|+    +...+.|+|+.|...|+++.+   ..+.|++++..-
T Consensus        26 l~iL~~l~~~~~~~~~~eia~~~gl----~kstv~r~l~tL~~~G~v~~~---~~~~Y~lg~~~~   83 (260)
T 2o0y_A           26 IDLLELFDAAHPTRSLKELVEGTKL----PKTTVVRLVATMCARSVLTSR---ADGSYSLGPEML   83 (260)
T ss_dssp             HHHHTTCBTTBSSBCHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEC---TTSCEEECHHHH
T ss_pred             HHHHHHHhhCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC---CCCeEEecHHHH
Confidence            345667753 358999999999999    999999999999999999984   334899998643

>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}

Probab=95.43  E-value=0.023  Score=43.16  Aligned_cols=65  Identities=18%  Similarity=0.333  Sum_probs=49.4

Q ss_pred             HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecccc---CCCcceecChhchHhh
Q 024046           44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS---GGERLYALNPVSKYFV  113 (273)
Q Consensus        44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~---~~~~~y~lt~~s~~l~  113 (273)
                      ..+..|+..|...+ .|..+||+.+|+    ++..+.++++-|...|+++....   .+.-.+.+|+.+..+.
T Consensus        38 ~~~~~iL~~l~~~~-~t~~eLa~~l~~----s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~  105 (146)
T 3tgn_A           38 NTQEHILMLLSEES-LTNSELARRLNV----SQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIA  105 (146)
T ss_dssp             HHHHHHHHHHTTCC-CCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHH
T ss_pred             HHHHHHHHHHHhCC-CCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHH
Confidence            45667888888765 999999999999    99999999999999999997321   1113577787776544

>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A

Probab=95.42  E-value=0.017  Score=44.47  Aligned_cols=66  Identities=20%  Similarity=0.207  Sum_probs=52.4

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccC---CCcceecChhchHhhc
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFVS  114 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~---~~~~y~lt~~s~~l~~  114 (273)
                      .++.++..|...++.|..+||+.+++    +...+.++++-|...|+++.....   +.-.+.+|+.+..+..
T Consensus        48 ~~~~iL~~l~~~~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~  116 (153)
T 2pex_A           48 PQYLVMLVLWETDERSVSEIGERLYL----DSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRS  116 (153)
T ss_dssp             HHHHHHHHHHHSCSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGG
T ss_pred             HHHHHHHHHHhCCCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHH
Confidence            45667888887779999999999999    999999999999999999974211   1125888998876653

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=95.39  E-value=0.013  Score=52.57  Aligned_cols=54  Identities=15%  Similarity=0.183  Sum_probs=45.5

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC--------------CCceEEEcccCC
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------------AGVEHVGGNMFE  251 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~--------------~ri~~~~gD~f~  251 (273)
                      ++++||=||||.|..+.++++. |.-+++++|+ |.|++.++++              +|++++.+|.+.
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~  273 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIP  273 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHH
T ss_pred             CCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHH
Confidence            4689999999999999999985 5578999999 8898876531              579999999875

>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50

Probab=95.29  E-value=0.016  Score=41.50  Aligned_cols=48  Identities=15%  Similarity=0.365  Sum_probs=42.1

Q ss_pred             HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      ..+..|+..|...++.|+.+||+.+|+    ++..+.+.|+.|...|++...
T Consensus        20 ~~~~~il~~l~~~~~~s~~ela~~l~i----s~~tv~~~l~~L~~~glv~~~   67 (109)
T 1sfx_A           20 PSDVRIYSLLLERGGMRVSEIARELDL----SARFVRDRLKVLLKRGFVRRE   67 (109)
T ss_dssp             HHHHHHHHHHHHHCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEE
Confidence            345667778876679999999999999    999999999999999999873

>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}

Probab=95.27  E-value=0.0079  Score=51.41  Aligned_cols=55  Identities=16%  Similarity=0.182  Sum_probs=46.9

Q ss_pred             hChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhc
Q 024046           47 LGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS  109 (273)
Q Consensus        47 lglfd~L~~~-g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s  109 (273)
                      +.|+++|... ++.|+.|||+.+|+    +...+.|+|+.|...|+++.    .++.|++++..
T Consensus        24 l~iL~~l~~~~~~~~~~eia~~~gl----~~stv~r~l~tL~~~G~v~~----~~~~Y~Lg~~~   79 (265)
T 2ia2_A           24 LAVIRCFDHRNQRRTLSDVARATDL----TRATARRFLLTLVELGYVAT----DGSAFWLTPRV   79 (265)
T ss_dssp             HHHHHTCCSSCSSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEE----SSSEEEECGGG
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEe----cCCEEEEcHHH
Confidence            4567777643 48999999999999    99999999999999999997    35889998864

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=95.22  E-value=0.047  Score=48.63  Aligned_cols=54  Identities=9%  Similarity=0.148  Sum_probs=41.6

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCC---CCCCceEEEcccCC
Q 024046          198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP---SYAGVEHVGGNMFE  251 (273)
Q Consensus       198 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~---~~~ri~~~~gD~f~  251 (273)
                      ...|||||.|.|.++..|+++..--+.++++. +..++..+   ..++++++.+|+++
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~  116 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD  116 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred             CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccc
Confidence            47899999999999999999753346888887 44333222   35899999999975

>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28

Probab=95.22  E-value=0.026  Score=42.49  Aligned_cols=65  Identities=12%  Similarity=0.248  Sum_probs=50.1

Q ss_pred             HHhChhHHHHhCC--CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           45 IQLGVFEIIAKAG--ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        45 ~elglfd~L~~~g--~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      .+..++..|...+  +.|..+||+.+++    ++..+.++++-|...|+++......+   -.+.+|+.+..+.
T Consensus        35 ~~~~iL~~l~~~~~~~~~~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~  104 (141)
T 3bro_A           35 TQMTIIDYLSRNKNKEVLQRDLESEFSI----KSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLE  104 (141)
T ss_dssp             HHHHHHHHHHHTTTSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTH
T ss_pred             HHHHHHHHHHHCCCCCcCHHHHHHHHCC----CcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHH
Confidence            4555777887766  7999999999999    99999999999999999987421111   2567787775443

>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*

Probab=95.17  E-value=0.012  Score=44.88  Aligned_cols=67  Identities=15%  Similarity=0.109  Sum_probs=52.6

Q ss_pred             HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccC---CCcceecChhchHhhc
Q 024046           44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFVS  114 (273)
Q Consensus        44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~---~~~~y~lt~~s~~l~~  114 (273)
                      ..++.++..|...++.|..+||+.+++    ++..+.++++.|...|+++.....   +.-.+.+|+.+..+..
T Consensus        40 ~~~~~iL~~l~~~~~~~~~~la~~l~~----~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~  109 (147)
T 1z91_A           40 YPQYLALLLLWEHETLTVKKMGEQLYL----DSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKE  109 (147)
T ss_dssp             HHHHHHHHHHHHHSEEEHHHHHHTTTC----CHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGG
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHCC----CcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence            345667788877679999999999999    999999999999999999974211   1124788888876553

>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}

Probab=95.15  E-value=0.03  Score=44.06  Aligned_cols=63  Identities=16%  Similarity=0.172  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecCh
Q 024046           37 LPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP  107 (273)
Q Consensus        37 ~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~  107 (273)
                      ...||++.+.+..-   ...++.|.++||+.+++    ++..++++|..|...|++....+ ..|.|.++.
T Consensus        26 ~~yAlr~L~~LA~~---~~~~~~s~~eIA~~~~i----~~~~l~kil~~L~~aGlv~s~rG-~~GGy~Lar   88 (159)
T 3lwf_A           26 GRYGLTITLELAKR---IGDGPISLRSIAQDKNL----SEHYLEQLIGPLRNAGIVKSIRG-AHGGYVLNG   88 (159)
T ss_dssp             HHHHHHHHHHHHHT---TTSCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECS-TTCEEEECS
T ss_pred             HHHHHHHHHHHHhc---CCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCeEEEecC-CCCceEecC
Confidence            34455555444321   22248999999999999    99999999999999999997542 446687764

>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28

Probab=95.13  E-value=0.023  Score=44.61  Aligned_cols=66  Identities=12%  Similarity=0.129  Sum_probs=51.0

Q ss_pred             HHHhChhHHHHh-CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           44 AIQLGVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        44 a~elglfd~L~~-~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      ..++.++..|.. .++.|..+||+.+++    +...+.++++-|...|+|++.....+   -.+.+|+.++.++
T Consensus        53 ~~q~~vL~~L~~~~~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~  122 (166)
T 3deu_A           53 QTHWVTLHNIHQLPPDQSQIQLAKAIGI----EQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLI  122 (166)
T ss_dssp             HHHHHHHHHHHHSCSSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHH
Confidence            345667888876 458999999999999    99999999999999999997421111   3577888877654

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=95.11  E-value=0.02  Score=54.09  Aligned_cols=74  Identities=16%  Similarity=0.083  Sum_probs=52.4

Q ss_pred             HHhhcccCCCcceEEEecCCccHHHHHHHHHCC------------------CCeEEEeec-hHHHHhCCC------CCC-
Q 024046          188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP------------------QIKAVNFDL-PHVVQDAPS------YAG-  241 (273)
Q Consensus       188 il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P------------------~l~~~~~Dl-p~v~~~a~~------~~r-  241 (273)
                      +++... .....+|+|.+||+|.++..+.+...                  ..+++++|+ |.++..|+.      .+. 
T Consensus       161 mv~~l~-p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~  239 (541)
T 2ar0_A          161 IIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN  239 (541)
T ss_dssp             HHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCB
T ss_pred             HHHHhc-cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCcc
Confidence            444444 34567999999999999998887632                  246899998 777776643      132 


Q ss_pred             ----ceEEEcccCC-C-CC--CCCEEEec
Q 024046          242 ----VEHVGGNMFE-S-VP--EGDAILMK  262 (273)
Q Consensus       242 ----i~~~~gD~f~-~-~p--~~D~~~l~  262 (273)
                          +.+..+|.+. + .+  ..|+|+..
T Consensus       240 ~~~~~~I~~gDtL~~~~~~~~~fD~Vv~N  268 (541)
T 2ar0_A          240 LDHGGAIRLGNTLGSDGENLPKAHIVATN  268 (541)
T ss_dssp             GGGTBSEEESCTTSHHHHTSCCEEEEEEC
T ss_pred             ccccCCeEeCCCcccccccccCCeEEEEC
Confidence                7899999997 2 22  23988864

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=95.08  E-value=0.0099  Score=56.18  Aligned_cols=75  Identities=19%  Similarity=0.136  Sum_probs=51.5

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCC---------------CCeEEEeec-hHHHHhCCCC-------CCc
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP---------------QIKAVNFDL-PHVVQDAPSY-------AGV  242 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P---------------~l~~~~~Dl-p~v~~~a~~~-------~ri  242 (273)
                      ..+++... . ...+|+|.+||+|.++..+.+..+               ..++.++|+ |.++..|+.+       .+|
T Consensus       235 ~lmv~ll~-p-~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i  312 (544)
T 3khk_A          235 TLIVEMLE-P-YKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNF  312 (544)
T ss_dssp             HHHHHHHC-C-CSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBC
T ss_pred             HHHHHHHh-c-CCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCccc
Confidence            33444443 2 234999999999999998876543               567899998 7777766531       345


Q ss_pred             eEEEcccCC-C-CCC-C-CEEEec
Q 024046          243 EHVGGNMFE-S-VPE-G-DAILMK  262 (273)
Q Consensus       243 ~~~~gD~f~-~-~p~-~-D~~~l~  262 (273)
                      .+..||.+. + .+. . |+|+..
T Consensus       313 ~i~~gDtL~~~~~~~~~fD~Iv~N  336 (544)
T 3khk_A          313 GKKNADSFLDDQHPDLRADFVMTN  336 (544)
T ss_dssp             CSSSCCTTTSCSCTTCCEEEEEEC
T ss_pred             ceeccchhcCcccccccccEEEEC
Confidence            568899987 3 333 2 888873

>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64

Probab=95.07  E-value=0.024  Score=46.47  Aligned_cols=68  Identities=13%  Similarity=0.173  Sum_probs=53.5

Q ss_pred             HHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccC-----CCcceecChhch
Q 024046           38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG-----GERLYALNPVSK  110 (273)
Q Consensus        38 ~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~-----~~~~y~lt~~s~  110 (273)
                      ..+|....++.|+..|.. ||.|+.+||+.+|+    ++..+.+.|+.|...|++......     ..-.|++|+...
T Consensus         9 lkaL~~~~rl~IL~~L~~-~~~s~~eLa~~l~i----s~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~~   81 (202)
T 2p4w_A            9 LDVLGNETRRRILFLLTK-RPYFVSELSRELGV----GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLR   81 (202)
T ss_dssp             HHHHHSHHHHHHHHHHHH-SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEE
T ss_pred             HHHhCCHHHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChHHH
Confidence            455666678888888876 79999999999999    999999999999999999874210     112577777553

>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0

Probab=95.04  E-value=0.017  Score=44.18  Aligned_cols=65  Identities=14%  Similarity=0.110  Sum_probs=44.1

Q ss_pred             HHhChhHHHHhC--CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccC---CCcceecChhchHhh
Q 024046           45 IQLGVFEIIAKA--GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFV  113 (273)
Q Consensus        45 ~elglfd~L~~~--g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~---~~~~y~lt~~s~~l~  113 (273)
                      .+..++..|...  ++.|..+||+.+++    ++..+.++++-|...|++++....   +.-.+.+|+.++.+.
T Consensus        42 ~q~~vL~~l~~~~~~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~  111 (148)
T 3jw4_A           42 QQGRMIGYIYENQESGIIQKDLAQFFGR----RGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALV  111 (148)
T ss_dssp             HHHHHHHHHHHHTTTCCCHHHHHHC----------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHH
Confidence            455677788776  69999999999999    999999999999999999874211   112567788776554

>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71

Probab=94.99  E-value=0.044  Score=39.30  Aligned_cols=53  Identities=25%  Similarity=0.265  Sum_probs=43.1

Q ss_pred             CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecccc-CCCcceecChhchHhh
Q 024046           57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS-GGERLYALNPVSKYFV  113 (273)
Q Consensus        57 g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~-~~~~~y~lt~~s~~l~  113 (273)
                      ++.+..+||+.+++    +...|.|.|.-|...|+++.... .+.+...+|+.++.++
T Consensus        35 ~~~s~~eLa~~l~l----~~stLsR~l~rLe~~GLV~r~~~~D~R~~v~LT~~G~~~l   88 (96)
T 2obp_A           35 TPWSLPKIAKRAQL----PMSVLRRVLTQLQAAGLADVSVEADGRGHASLTQEGAALA   88 (96)
T ss_dssp             CCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTTSCEEEEECHHHHHHH
T ss_pred             CCcCHHHHHHHhCC----chhhHHHHHHHHHHCCCEEeecCCCCceeEEECHHHHHHH
Confidence            58899999999999    99999999999999999997432 1224568888876554

>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D

Probab=94.98  E-value=0.017  Score=43.30  Aligned_cols=65  Identities=12%  Similarity=0.159  Sum_probs=51.1

Q ss_pred             HHhChhHHHHhC--CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccC---CCcceecChhchHhh
Q 024046           45 IQLGVFEIIAKA--GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFV  113 (273)
Q Consensus        45 ~elglfd~L~~~--g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~---~~~~y~lt~~s~~l~  113 (273)
                      .+..++..|...  ++.|..+||+.+++    ++..+.++++-|...|++++....   +.-.+.+|+.+..+.
T Consensus        38 ~q~~vL~~l~~~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~  107 (127)
T 2frh_A           38 EEFAVLTYISENKEKEYYLKDIINHLNY----KQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKI  107 (127)
T ss_dssp             HHHHHHHHHHHTCCSEEEHHHHHHHSSS----HHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHH
T ss_pred             HHHHHHHHHHhccCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence            455577778776  68999999999999    999999999999999999873211   123577888877654

>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}

Probab=94.94  E-value=0.038  Score=42.66  Aligned_cols=65  Identities=9%  Similarity=0.114  Sum_probs=49.7

Q ss_pred             HHhChhHHH-HhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           45 IQLGVFEII-AKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        45 ~elglfd~L-~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      .++.++..| ...++.|..+||+.+++    ++..+.++++-|...|++++.....+   -.+.+|+.+..+.
T Consensus        48 ~~~~iL~~L~~~~~~~~~~ela~~l~i----~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~  116 (160)
T 3boq_A           48 AKFDAMAQLARNPDGLSMGKLSGALKV----TNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTF  116 (160)
T ss_dssp             HHHHHHHHHHHCTTCEEHHHHHHHCSS----CCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHH
Confidence            456688888 44469999999999999    99999999999999999997321111   2477888776554

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=94.91  E-value=0.02  Score=53.99  Aligned_cols=66  Identities=17%  Similarity=0.066  Sum_probs=51.3

Q ss_pred             CcceEEEecCCccHHHHHHHHHC---CCCeEEEeec-hHHHHhCCCC--------CCceEEEcccCC-CCC---C--CCE
Q 024046          197 NVERLVDVGGGFGVTLSMITSKY---PQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFE-SVP---E--GDA  258 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~---P~l~~~~~Dl-p~v~~~a~~~--------~ri~~~~gD~f~-~~p---~--~D~  258 (273)
                      ...+|+|.+||+|.++..+.+..   +..++.++|+ |.++..|+.+        +++.+..+|.+. ++|   .  .|+
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~  300 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG  300 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence            45799999999999999999885   4678999998 7777766531        467899999997 344   2  298


Q ss_pred             EEec
Q 024046          259 ILMK  262 (273)
Q Consensus       259 ~~l~  262 (273)
                      |+..
T Consensus       301 IvaN  304 (542)
T 3lkd_A          301 VLMN  304 (542)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            8864

>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}

Probab=94.90  E-value=0.027  Score=43.09  Aligned_cols=66  Identities=11%  Similarity=0.168  Sum_probs=49.0

Q ss_pred             HHHhChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           44 AIQLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        44 a~elglfd~L~~~g-~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      ..+..++..|...+ +.|..+||+.+++    ++..+.++++-|...|++++.....+   -.+.+|+.+..+.
T Consensus        39 ~~q~~vL~~l~~~~~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~  108 (150)
T 3fm5_A           39 VRSYSVLVLACEQAEGVNQRGVAATMGL----DPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLR  108 (150)
T ss_dssp             HHHHHHHHHHHHSTTCCCSHHHHHHHTC----CHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHH
Confidence            35666777886544 7899999999999    99999999999999999997321111   2377888877654

>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}

Probab=94.87  E-value=0.059  Score=42.11  Aligned_cols=66  Identities=15%  Similarity=0.175  Sum_probs=49.3

Q ss_pred             HHHhChhHHHHhC--CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCc---ceecChhchHhh
Q 024046           44 AIQLGVFEIIAKA--GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV  113 (273)
Q Consensus        44 a~elglfd~L~~~--g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~---~y~lt~~s~~l~  113 (273)
                      ..++.++..|...  ++.|..+||+.+++    ++..+.++++-|...|+|++.....+.   .+.+|+.+..++
T Consensus        46 ~~q~~vL~~l~~~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~  116 (168)
T 3u2r_A           46 AQQYNTLRLLRSVHPEGMATLQIADRLIS----RAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLL  116 (168)
T ss_dssp             HHHHHHHHHHHHHTTSCEEHHHHHHHC-------CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHH
Confidence            3566678888774  49999999999999    999999999999999999974211122   578888887655

>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B

Probab=94.83  E-value=0.019  Score=39.54  Aligned_cols=51  Identities=22%  Similarity=0.348  Sum_probs=41.4

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      .+..|++.|...++.|+.||++.++..++.++..+.++|+.|...|++.+.
T Consensus        10 ~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~   60 (82)
T 1p6r_A           10 AELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHH   60 (82)
T ss_dssp             HHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEE
Confidence            456677888776799999999999731112788999999999999999974

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=94.80  E-value=0.014  Score=49.62  Aligned_cols=76  Identities=17%  Similarity=0.173  Sum_probs=46.9

Q ss_pred             hhHHHHHhhcccCCCcceEEEecCCccHHHHHHHHH--CCCCeE--EEeechHHHHhCCCC-CCc---eEEEc-ccCCCC
Q 024046          183 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSK--YPQIKA--VNFDLPHVVQDAPSY-AGV---EHVGG-NMFESV  253 (273)
Q Consensus       183 ~~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~--~P~l~~--~~~Dlp~v~~~a~~~-~ri---~~~~g-D~f~~~  253 (273)
                      +...+|-+.+ -+++..+|||+||+.|..+--.++.  -...++  +..|+|  +...... +++   +++.| ||++.-
T Consensus        60 yKL~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~--~~P~~~~~~Gv~~i~~~~G~Df~~~~  136 (269)
T 2px2_A           60 AKLRWLVERR-FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGH--EEPMLMQSYGWNIVTMKSGVDVFYKP  136 (269)
T ss_dssp             HHHHHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTS--CCCCCCCSTTGGGEEEECSCCGGGSC
T ss_pred             HHHHHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccc--cCCCcccCCCceEEEeeccCCccCCC
Confidence            4445565665 4788899999999999999888875  222233  334431  1111111 455   55557 999844


Q ss_pred             CC-CCEEEe
Q 024046          254 PE-GDAILM  261 (273)
Q Consensus       254 p~-~D~~~l  261 (273)
                      |. .|+|+.
T Consensus       137 ~~~~DvVLS  145 (269)
T 2px2_A          137 SEISDTLLC  145 (269)
T ss_dssp             CCCCSEEEE
T ss_pred             CCCCCEEEe
Confidence            43 498875

>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A

Probab=94.78  E-value=0.023  Score=40.39  Aligned_cols=51  Identities=12%  Similarity=0.278  Sum_probs=41.1

Q ss_pred             CCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhh
Q 024046           59 LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV  113 (273)
Q Consensus        59 ~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~  113 (273)
                      .|..+||+.+++    ++..+.++++-|...|++......+...+.+|+.+..+.
T Consensus        31 ~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT~~G~~~~   81 (95)
T 2qvo_A           31 VYIQYIASKVNS----PHSYVWLIIKKFEEAKMVECELEGRTKIIRLTDKGQKIA   81 (95)
T ss_dssp             EEHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHH
T ss_pred             cCHHHHHHHHCc----CHHHHHHHHHHHHHCcCccCCCCCCeEEEEEChhHHHHH
Confidence            899999999999    999999999999999999432101223589999887654

>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A

Probab=94.73  E-value=0.03  Score=46.24  Aligned_cols=51  Identities=22%  Similarity=0.334  Sum_probs=45.3

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhh
Q 024046           56 AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV  113 (273)
Q Consensus        56 ~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~  113 (273)
                      .++.+..+||+.+++    ++..+.++++-|...|++++.   ....+.+|+.++.+.
T Consensus        18 ~~~~~~~~lA~~l~v----s~~tvs~~l~~Le~~GlV~r~---~~~~i~LT~~G~~~~   68 (214)
T 3hrs_A           18 HNKITNKEIAQLMQV----SPPAVTEMMKKLLAEELLIKD---KKAGYLLTDLGLKLV   68 (214)
T ss_dssp             CSCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---TTTEEEECHHHHHHH
T ss_pred             CCCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEEe---cCCCeEECHHHHHHH
Confidence            369999999999999    999999999999999999983   456799999987654

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=94.72  E-value=0.028  Score=55.18  Aligned_cols=67  Identities=12%  Similarity=0.149  Sum_probs=47.7

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCC---CeEEEeec-hHHHHhC--C----C----C--CCceEEEcccCCC--CC-C
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQ---IKAVNFDL-PHVVQDA--P----S----Y--AGVEHVGGNMFES--VP-E  255 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~---l~~~~~Dl-p~v~~~a--~----~----~--~ri~~~~gD~f~~--~p-~  255 (273)
                      +....+|+|.|||+|.++.+++++.++   .+.+++|+ |.+++.|  +    .    +  +...+...|++.+  .+ .
T Consensus       319 l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~  398 (878)
T 3s1s_A          319 LTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFA  398 (878)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGT
T ss_pred             CCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccC
Confidence            345689999999999999999999873   57899998 7666655  1    1    1  2245666777763  22 2


Q ss_pred             C-CEEEe
Q 024046          256 G-DAILM  261 (273)
Q Consensus       256 ~-D~~~l  261 (273)
                      . |+|+.
T Consensus       399 kFDVVIg  405 (878)
T 3s1s_A          399 NVSVVVM  405 (878)
T ss_dssp             TEEEEEE
T ss_pred             CCCEEEE
Confidence            2 88876

>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}

Probab=94.64  E-value=0.037  Score=44.48  Aligned_cols=69  Identities=13%  Similarity=0.104  Sum_probs=54.8

Q ss_pred             HHHHhChhHHHHh--CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhhcC
Q 024046           43 AAIQLGVFEIIAK--AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFVSN  115 (273)
Q Consensus        43 ~a~elglfd~L~~--~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~~~  115 (273)
                      +..+..++..|..  .|+.|..+||+.+++    ++..+.++++-|...|+++......+   -.+.+|+.+..+...
T Consensus        40 t~~q~~vL~~L~~~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~  113 (189)
T 3nqo_A           40 TSRQYMTILSILHLPEEETTLNNIARKMGT----SKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMVT  113 (189)
T ss_dssp             CHHHHHHHHHHHHSCGGGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHH
Confidence            4566778888875  368999999999999    99999999999999999997432112   358899998766543

>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A

Probab=94.62  E-value=0.038  Score=42.64  Aligned_cols=46  Identities=20%  Similarity=0.200  Sum_probs=41.7

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      .+..|+..|...|+.|..|||+.+|+    ++..+.+.++.|...|++..
T Consensus         8 ~~~~iL~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~   53 (150)
T 2w25_A            8 IDRILVRELAADGRATLSELATRAGL----SVSAVQSRVRRLESRGVVQG   53 (150)
T ss_dssp             HHHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence            45668888887789999999999999    99999999999999999975

>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2

Probab=94.58  E-value=0.04  Score=42.28  Aligned_cols=46  Identities=24%  Similarity=0.393  Sum_probs=41.7

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      .+..|++.|...++.|..|||+.+|+    ++..+.+.++.|...|++..
T Consensus         6 ~d~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~   51 (144)
T 2cfx_A            6 IDLNIIEELKKDSRLSMRELGRKIKL----SPPSVTERVRQLESFGIIKQ   51 (144)
T ss_dssp             HHHHHHHHHHHCSCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEE
Confidence            35568888988789999999999999    99999999999999999985

>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*

Probab=94.54  E-value=0.032  Score=43.04  Aligned_cols=46  Identities=22%  Similarity=0.326  Sum_probs=42.1

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      .+..|+..|...++.|..+||+.+|+    ++..+.+.++.|...|++..
T Consensus         4 ~~~~il~~L~~~~~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~   49 (150)
T 2pn6_A            4 IDLRILKILQYNAKYSLDEIAREIRI----PKATLSYRIKKLEKDGVIKG   49 (150)
T ss_dssp             HHHHHHHHHTTCTTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSSCC
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEE
Confidence            46678889988779999999999999    99999999999999999985

>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A

Probab=94.52  E-value=0.051  Score=41.88  Aligned_cols=46  Identities=20%  Similarity=0.294  Sum_probs=39.2

Q ss_pred             CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecCh
Q 024046           57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP  107 (273)
Q Consensus        57 g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~  107 (273)
                      ++.|.++||+.+++    ++..++++|..|...|+++... +..|.|.++.
T Consensus        27 ~~~s~~~IA~~~~i----~~~~l~kil~~L~~aGlv~s~r-G~~GGy~Lar   72 (143)
T 3t8r_A           27 GCISLKSIAEENNL----SDLYLEQLVGPLRNAGLIRSVR-GAKGGYQLRV   72 (143)
T ss_dssp             CCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECS-SSSSEEEESS
T ss_pred             CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCEEEecC-CCCCCeeecC
Confidence            38999999999999    9999999999999999998643 2346787765

>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}

Probab=94.51  E-value=0.039  Score=37.54  Aligned_cols=55  Identities=13%  Similarity=0.289  Sum_probs=46.6

Q ss_pred             HHhChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecC
Q 024046           45 IQLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN  106 (273)
Q Consensus        45 ~elglfd~L~~~g-~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt  106 (273)
                      .+-.|+++|.+.| |++..+||+.+|+    +...+...|..|...|.+..+   ..-.|.++
T Consensus        20 ~eekVLe~LkeaG~PlkageIae~~Gv----dKKeVdKaik~LKkEgkI~SP---kRCyw~~~   75 (80)
T 2lnb_A           20 LEQRILQVLTEAGSPVKLAQLVKECQA----PKRELNQVLYRMKKELKVSLT---SPATWCLG   75 (80)
T ss_dssp             HHHHHHHHHHHHTSCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE---ETTEEEES
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHcCCccCC---CCceeeCC
Confidence            3556888999887 9999999999999    999999999999999999863   34556665

>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55

Probab=94.49  E-value=0.044  Score=42.45  Aligned_cols=62  Identities=11%  Similarity=0.112  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChh
Q 024046           37 LPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV  108 (273)
Q Consensus        37 ~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~  108 (273)
                      ...+|++.+.+...    ..++.|+++||+.+++    ++..++++|..|...|+++...  +.|.|.++..
T Consensus        13 ~~yAl~~L~~La~~----~~~~~~~~~iA~~~~i----~~~~l~kil~~L~~~Glv~s~r--G~GGy~L~~~   74 (149)
T 1ylf_A           13 FSIAVHILSILKNN----PSSLCTSDYMAESVNT----NPVVIRKIMSYLKQAGFVYVNR--GPGGAGLLKD   74 (149)
T ss_dssp             HHHHHHHHHHHHHS----CGGGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC-----CCEEESSC
T ss_pred             HHHHHHHHHHHHhC----CCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEcc--CCCceEeCCC
Confidence            34456655555331    2248999999999999    9999999999999999998653  2567877654

>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}

Probab=94.43  E-value=0.03  Score=41.98  Aligned_cols=46  Identities=13%  Similarity=0.245  Sum_probs=40.6

Q ss_pred             HHhChhHHHHhCC-C-CCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           45 IQLGVFEIIAKAG-E-LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        45 ~elglfd~L~~~g-~-~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      .+..|+..|...+ | .|+.|||+.+++    +...+.|.|+.|...|++.+
T Consensus        27 ~e~~il~~L~~~~~~~~t~~eLa~~l~~----s~sTV~r~L~~L~~~GlV~r   74 (123)
T 3r0a_A           27 ADLNVMKSFLNEPDRWIDTDALSKSLKL----DVSTVQRSVKKLHEKEILQR   74 (123)
T ss_dssp             HHHHHHHHHHHSTTCCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHHHHHCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEe
Confidence            3566788887655 4 899999999999    99999999999999999986

>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}

Probab=94.34  E-value=0.062  Score=41.82  Aligned_cols=84  Identities=17%  Similarity=0.188  Sum_probs=60.8

Q ss_pred             HHhChhHHHHhC--CCCCHHHHHHHhC-cCCCCCcchHHHHHHHHhcCCceecccc----CCCc----ceecChhchHhh
Q 024046           45 IQLGVFEIIAKA--GELSAPEIAAQLQ-AQNVKAPMMLDRMLRLLVSHRVLECSVS----GGER----LYALNPVSKYFV  113 (273)
Q Consensus        45 ~elglfd~L~~~--g~~t~~eLA~~~g-~~~~~~~~~l~rlL~~L~~~gll~~~~~----~~~~----~y~lt~~s~~l~  113 (273)
                      .++.|+..|...  +..|+++|++.++ +    +...+.|.|+.|+..|++++...    .+.|    .|.+|+.+..++
T Consensus        30 tR~~IL~~Ll~~p~~~~ta~eL~~~l~~l----S~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l  105 (151)
T 3u1d_A           30 TRLDVLHQILAQPDGVLSVEELLYRNPDE----TEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIALL  105 (151)
T ss_dssp             HHHHHHHHHHHSTTSCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHHH
Confidence            677778887664  3579999999999 8    99999999999999999995321    0112    799999998665


Q ss_pred             cCCCCCccchhhcccCChhHHHHhhhHHHHH
Q 024046          114 SNKDGASLGHFMALPLDKVFMESWLGLKDAV  144 (273)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l  144 (273)
                      ...+      ++      .-..+|..|.+.+
T Consensus       106 ~~y~------~l------a~~~alr~l~~~v  124 (151)
T 3u1d_A          106 RAVS------MY------EEAAVWRSVYEQM  124 (151)
T ss_dssp             HHTT------CS------THHHHTHHHHHHS
T ss_pred             HHhH------HH------hHHHHHHHHHHHh
Confidence            4321      11      0225777777776

>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A

Probab=94.30  E-value=0.049  Score=42.66  Aligned_cols=46  Identities=15%  Similarity=0.338  Sum_probs=41.9

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      .+..|+..|...++.|..|||+.+|+    ++..+.+.++.|...|++..
T Consensus        11 ~~~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~   56 (162)
T 2p5v_A           11 TDIKILQVLQENGRLTNVELSERVAL----SPSPCLRRLKQLEDAGIVRQ   56 (162)
T ss_dssp             HHHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEee
Confidence            45568888988789999999999999    99999999999999999985

>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}

Probab=94.22  E-value=0.018  Score=46.40  Aligned_cols=68  Identities=24%  Similarity=0.295  Sum_probs=53.3

Q ss_pred             HHHHHHHHHhChhHHHHhCCCCCHHHHHHHhC-cCCCCCcchHHHHHHHHhcCCceeccccC--C---CcceecChhch
Q 024046           38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQLQ-AQNVKAPMMLDRMLRLLVSHRVLECSVSG--G---ERLYALNPVSK  110 (273)
Q Consensus        38 ~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g-~~~~~~~~~l~rlL~~L~~~gll~~~~~~--~---~~~y~lt~~s~  110 (273)
                      ..+|.--.++.|+..|.+ |+.|+.+|++.++ +    +...+.+.|+.|...||++.....  .   ...|++++.+.
T Consensus        17 ~~~La~P~Rl~il~~L~~-~~~~~~~l~~~l~~~----~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~~~   90 (182)
T 4g6q_A           17 VDLLHHPLRWRITQLLIG-RSLTTRELAELLPDV----ATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQAG   90 (182)
T ss_dssp             HHHTTSHHHHHHHHHTTT-SCEEHHHHHHHCTTB----CHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTTTT
T ss_pred             HHHhCCHHHHHHHHHHHh-CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEEeccccc
Confidence            455666789999999986 7999999999996 8    888999999999999999853210  1   13577777553

>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41

Probab=94.21  E-value=0.04  Score=40.14  Aligned_cols=46  Identities=26%  Similarity=0.341  Sum_probs=39.7

Q ss_pred             HHhChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           45 IQLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        45 ~elglfd~L~~~g-~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      .++.|+..|...| +.|..+||+.+|+    +...+++.|..|...|+++.
T Consensus        19 ~~l~Il~~l~~~g~~~s~~eLa~~lgv----s~~tV~~~L~~L~~~GlV~~   65 (110)
T 1q1h_A           19 DVIDVLRILLDKGTEMTDEEIANQLNI----KVNDVRKKLNLLEEQGFVSY   65 (110)
T ss_dssp             TTHHHHHHHHHHCSCBCHHHHHHTTTS----CHHHHHHHHHHHHHHTSCEE
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence            3456777775446 8999999999999    99999999999999999986

>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*

Probab=94.13  E-value=0.092  Score=40.54  Aligned_cols=64  Identities=17%  Similarity=0.129  Sum_probs=48.8

Q ss_pred             HhChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           46 QLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        46 elglfd~L~~~g-~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      +..++-.|...+ +.+..+||+.+++    ++..+.++++-|...|++++.....+   -...+|+.+..+.
T Consensus        33 q~~vL~~L~~~~~~~~~~eLa~~l~~----~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~  100 (151)
T 4aik_A           33 HWVTLYNINRLPPEQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPII  100 (151)
T ss_dssp             HHHHHHHHHHSCTTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHH
T ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHCc----CHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHH
Confidence            444666676544 6788999999999    99999999999999999986432122   2477888887654

>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28

Probab=94.08  E-value=0.032  Score=45.68  Aligned_cols=66  Identities=14%  Similarity=-0.062  Sum_probs=52.3

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhhc
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFVS  114 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~~  114 (273)
                      .+..|+..|...++.|..+||+.+++    ++..+.++++-|...|++.+.....+   -.+.+|+.+..+..
T Consensus        49 ~q~~iL~~L~~~~~~t~~eLa~~l~i----~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~  117 (207)
T 2fxa_A           49 NEHHILWIAYQLNGASISEIAKFGVM----HVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFW  117 (207)
T ss_dssp             HHHHHHHHHHHHTSEEHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHHH
Confidence            45557778877679999999999999    99999999999999999997421111   26889999876653

>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A

Probab=94.04  E-value=0.011  Score=49.61  Aligned_cols=68  Identities=7%  Similarity=0.145  Sum_probs=53.9

Q ss_pred             HHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec-cccCC-----CcceecChhch
Q 024046           38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC-SVSGG-----ERLYALNPVSK  110 (273)
Q Consensus        38 ~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~-~~~~~-----~~~y~lt~~s~  110 (273)
                      ..+|....++.|+..|.. ||.|+.+||+.+|+    ++..+.+.|+.|...|++.. .....     .-.|++|+.+.
T Consensus         6 lkaL~~~~R~~IL~~L~~-g~~s~~ELa~~lgl----S~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt~~~~   79 (232)
T 2qlz_A            6 FYILGNKVRRDLLSHLTC-MECYFSLLSSKVSV----SSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISIAKS   79 (232)
T ss_dssp             HHHHTSHHHHHHHHHHTT-TTTCSSSSCTTCCC----CHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEEECCCEE
T ss_pred             HHHhCCHHHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEccchh
Confidence            455666778889999986 89999999999999    99999999999999999987 21111     12488877553

>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2

Probab=93.98  E-value=0.043  Score=42.40  Aligned_cols=46  Identities=20%  Similarity=0.253  Sum_probs=41.8

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      .+..|+..|...|+.|..+||+.+|+    ++..+.+.++.|...|++..
T Consensus         8 ~~~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~   53 (151)
T 2cyy_A            8 IDKKIIKILQNDGKAPLREISKITGL----AESTIHERIRKLRESGVIKK   53 (151)
T ss_dssp             HHHHHHHHHHHCTTCCHHHHHHHHCS----CHHHHHHHHHHHHHHTSSCC
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEE
Confidence            35568888988789999999999999    99999999999999999985

>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2

Probab=93.86  E-value=0.053  Score=41.92  Aligned_cols=46  Identities=13%  Similarity=0.268  Sum_probs=41.8

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      .+..|+..|.+.++.|..|||+.+|+    ++..+.+.++.|...|++..
T Consensus         9 ~d~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~   54 (152)
T 2cg4_A            9 LDRGILEALMGNARTAYAELAKQFGV----SPETIHVRVEKMKQAGIITG   54 (152)
T ss_dssp             HHHHHHHHHHHCTTSCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHcCCcce
Confidence            35568888988789999999999999    99999999999999999985

>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A

Probab=93.82  E-value=0.031  Score=41.36  Aligned_cols=66  Identities=20%  Similarity=0.204  Sum_probs=46.6

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCc--c-eecChhchHh
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER--L-YALNPVSKYF  112 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~--~-y~lt~~s~~l  112 (273)
                      .+..|+..|...++.|..+||+.++..++.++..+.++|+-|...|++++..  .+.  . +.+|+.+..+
T Consensus        11 ~~~~vL~~l~~~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~--~~rr~~~~~lT~~g~~~   79 (123)
T 1okr_A           11 AEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKK--DNKIFQYYSLVEESDIK   79 (123)
T ss_dssp             HHHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEE--ETTEEEEEESSCHHHHH
T ss_pred             HHHHHHHHHHhCCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEe--cCCeEEEEEecCHHHHH
Confidence            3455666776657999999999999310117999999999999999999742  122  1 3466665544

>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A

Probab=93.79  E-value=0.072  Score=43.19  Aligned_cols=52  Identities=10%  Similarity=0.217  Sum_probs=45.7

Q ss_pred             HHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        39 ~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      .++....+..|+..|.+ |+.|..|||+.+|+    ++..+.+.++.|...|++...
T Consensus        15 k~l~d~~~~~IL~~L~~-~~~s~~eLA~~lgl----S~stv~~~l~~Le~~GlI~~~   66 (192)
T 1uly_A           15 KVMLEDTRRKILKLLRN-KEMTISQLSEILGK----TPQTIYHHIEKLKEAGLVEVK   66 (192)
T ss_dssp             HHHHSHHHHHHHHHHTT-CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHhCCHHHHHHHHHHHc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence            34455677889999985 89999999999999    999999999999999999874

>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}

Probab=93.75  E-value=0.071  Score=42.30  Aligned_cols=46  Identities=17%  Similarity=0.336  Sum_probs=41.9

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      .+..|+..|...++.|..|||+.+|+    ++..+.+.++.|...|++..
T Consensus        18 ~d~~IL~~L~~~~~~s~~eLA~~lgl----S~~tv~~~l~~L~~~G~I~~   63 (171)
T 2ia0_A           18 LDRNILRLLKKDARLTISELSEQLKK----PESTIHFRIKKLQERGVIER   63 (171)
T ss_dssp             HHHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEe
Confidence            45568889988789999999999999    99999999999999999975

>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}

Probab=93.73  E-value=0.056  Score=42.42  Aligned_cols=46  Identities=11%  Similarity=0.215  Sum_probs=42.3

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      .+..|++.|.+.|+.|..+||+.+|+    ++..+.+-++-|...|++..
T Consensus         4 ~d~~il~~L~~~~~~s~~~la~~lg~----s~~tv~~rl~~L~~~g~i~~   49 (162)
T 3i4p_A            4 LDRKILRILQEDSTLAVADLAKKVGL----STTPCWRRIQKMEEDGVIRR   49 (162)
T ss_dssp             HHHHHHHHHTTCSCSCHHHHHHHHTC----CHHHHHHHHHHHHHTTSSCC
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeee
Confidence            45678899988789999999999999    99999999999999999984

>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}

Probab=93.70  E-value=0.061  Score=41.47  Aligned_cols=46  Identities=15%  Similarity=0.282  Sum_probs=41.9

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      .+..|+..|...++.|..|||+.+|+    ++..+.+.++.|...|++..
T Consensus        10 ~d~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~   55 (151)
T 2dbb_A           10 VDMQLVKILSENSRLTYRELADILNT----TRQRIARRIDKLKKLGIIRK   55 (151)
T ss_dssp             HHHHHHHHHHHCTTCCHHHHHHHTTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence            45568888988789999999999999    99999999999999999985

>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0

Probab=93.63  E-value=0.073  Score=41.94  Aligned_cols=47  Identities=26%  Similarity=0.432  Sum_probs=39.9

Q ss_pred             CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChh
Q 024046           57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV  108 (273)
Q Consensus        57 g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~  108 (273)
                      ++.|.++||+.+++    ++..++++|..|...|+++-..+ ..|.|++...
T Consensus        27 ~~~s~~~IA~~~~i----s~~~l~kil~~L~~aGlv~s~rG-~~GGy~Lar~   73 (162)
T 3k69_A           27 SKVASRELAQSLHL----NPVMIRNILSVLHKHGYLTGTVG-KNGGYQLDLA   73 (162)
T ss_dssp             SCBCHHHHHHHHTS----CGGGTHHHHHHHHHTTSSEEECS-TTCEEECCSC
T ss_pred             CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeecC-CCCCeEecCC
Confidence            48999999999999    99999999999999999986532 3466888753

>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}

Probab=93.63  E-value=0.047  Score=41.96  Aligned_cols=63  Identities=16%  Similarity=0.255  Sum_probs=47.1

Q ss_pred             hChhHHHHh--CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           47 LGVFEIIAK--AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        47 lglfd~L~~--~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      ..++..|..  .|+.|..+||+.+++    ++..+.++++-|...|++++.....+   -...+|+.++.+.
T Consensus        38 ~~vL~~L~~~~~~~~t~~eLa~~l~~----~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~  105 (147)
T 4b8x_A           38 YEALVLLTFSKSGELPMSKIGERLMV----HPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVV  105 (147)
T ss_dssp             HHHHHHHHTSGGGEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHH
T ss_pred             HHHHHHHHHCCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHH
Confidence            334555542  358999999999999    99999999999999999997432122   2477888886654

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=93.63  E-value=0.085  Score=45.58  Aligned_cols=50  Identities=24%  Similarity=0.253  Sum_probs=38.9

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS  238 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~  238 (273)
                      +..++..+.  .....|||++||+|..+.++++..  -+++++|+ |..++.|++
T Consensus       225 ~~~~i~~~~--~~~~~vlD~f~GsGt~~~~a~~~g--~~~~g~e~~~~~~~~a~~  275 (297)
T 2zig_A          225 AERLVRMFS--FVGDVVLDPFAGTGTTLIAAARWG--RRALGVELVPRYAQLAKE  275 (297)
T ss_dssp             HHHHHHHHC--CTTCEEEETTCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHcC--CeEEEEeCCHHHHHHHHH
Confidence            455666554  356799999999999999988864  57999999 777777654

>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}

Probab=93.63  E-value=0.035  Score=40.07  Aligned_cols=51  Identities=25%  Similarity=0.262  Sum_probs=41.7

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      .+..|+..|-+.|+.|+.||++.++..++.++.-+.++|+-|+..|++.+.
T Consensus        36 ~e~~VL~~L~~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~   86 (99)
T 2k4b_A           36 AELIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTE   86 (99)
T ss_dssp             SCSHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEE
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEE
Confidence            355688888776899999999999852122578999999999999999974

>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2

Probab=93.63  E-value=0.056  Score=41.05  Aligned_cols=45  Identities=20%  Similarity=0.285  Sum_probs=40.6

Q ss_pred             HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        46 elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      +..|+..|...++.|..+||+.+|+    ++..+.+.++.|...|++..
T Consensus         6 ~~~il~~L~~~~~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~   50 (141)
T 1i1g_A            6 DKIILEILEKDARTPFTEIAKKLGI----SETAVRKRVKALEEKGIIEG   50 (141)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSSCC
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEec
Confidence            4567888877679999999999999    99999999999999999975

>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50

Probab=93.62  E-value=0.064  Score=38.32  Aligned_cols=36  Identities=11%  Similarity=0.232  Sum_probs=33.8

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           56 AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        56 ~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      .++.|..|||+.+|+    +...+.+.|+.|...|+++..
T Consensus        34 ~~~~t~~ela~~l~i----s~~tv~~~l~~L~~~g~v~~~   69 (109)
T 2d1h_A           34 EKPITSEELADIFKL----SKTTVENSLKKLIELGLVVRT   69 (109)
T ss_dssp             CSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             CCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEee
Confidence            469999999999999    999999999999999999974

>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2

Probab=93.45  E-value=0.066  Score=44.46  Aligned_cols=54  Identities=11%  Similarity=0.122  Sum_probs=44.7

Q ss_pred             CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhhc
Q 024046           57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS  114 (273)
Q Consensus        57 g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~~  114 (273)
                      ++.|+.++|+.+++    ++..+.+.++.|...|+|++....+...+.+|+.++.+..
T Consensus        26 ~~~s~s~aA~~L~i----sq~avSr~I~~LE~~~L~~R~~~~R~~~v~LT~~G~~l~~   79 (230)
T 3cta_A           26 AYLTSSKLADMLGI----SQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLY   79 (230)
T ss_dssp             EECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHH
T ss_pred             CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEEEcCCeEEEEECHHHHHHHH
Confidence            36889999999999    9999999999999999999731112467889999887653

>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28

Probab=93.21  E-value=0.045  Score=43.47  Aligned_cols=65  Identities=12%  Similarity=0.149  Sum_probs=49.7

Q ss_pred             HHhChhHHHHhCCC---CCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           45 IQLGVFEIIAKAGE---LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        45 ~elglfd~L~~~g~---~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      .++.|+..|...++   .|..+||+.+++    ++..+.++++-|...|++++.....+   -.+.+|+.+..+.
T Consensus        70 ~~~~iL~~L~~~~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~  140 (181)
T 2fbk_A           70 AGWDLLLTLYRSAPPEGLRPTELSALAAI----SGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALV  140 (181)
T ss_dssp             HHHHHHHHHHHHCCSSCBCHHHHHHHCSC----CSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHH
Confidence            45668888877554   899999999999    99999999999999999997321011   2477888776554

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=93.21  E-value=0.12  Score=45.55  Aligned_cols=76  Identities=12%  Similarity=0.145  Sum_probs=57.5

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCC---------------------------CCCceEEEcc
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS---------------------------YAGVEHVGGN  248 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~---------------------------~~ri~~~~gD  248 (273)
                      .+...||.+|||.....-.|...+|+++.+=+|+|+|++.-+.                           .++..+++.|
T Consensus        96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D  175 (334)
T 1rjd_A           96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD  175 (334)
T ss_dssp             CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred             CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence            3568999999999999999999999999999999998774321                           1689999999


Q ss_pred             cCC-CC--------C--CC-CEEEecccccccCCC
Q 024046          249 MFE-SV--------P--EG-DAILMKVGNFENYQS  271 (273)
Q Consensus       249 ~f~-~~--------p--~~-D~~~l~~vLHd~~~~  271 (273)
                      +.+ ++        +  .. .+++.=-+|+..+++
T Consensus       176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~  210 (334)
T 1rjd_A          176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNN  210 (334)
T ss_dssp             TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHH
T ss_pred             CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHH
Confidence            987 22        1  11 456666666665543

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=93.19  E-value=0.078  Score=45.51  Aligned_cols=46  Identities=22%  Similarity=0.142  Sum_probs=36.7

Q ss_pred             hhHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 024046          183 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL  229 (273)
Q Consensus       183 ~~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl  229 (273)
                      +....+.+.+- +....+|||+|||.|.++.-++++.|-.+++++|+
T Consensus        77 fKL~ei~eK~~-Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~Gvdv  122 (282)
T 3gcz_A           77 AKLRWMEERGY-VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTL  122 (282)
T ss_dssp             HHHHHHHHTTS-CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECC
T ss_pred             HHHHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEe
Confidence            44456666664 77778999999999999999888888766777877

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=93.10  E-value=0.22  Score=42.59  Aligned_cols=81  Identities=14%  Similarity=0.093  Sum_probs=46.4

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHH-hCCCC----CCceEEEcccC-CCCCC--C
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQ-DAPSY----AGVEHVGGNMF-ESVPE--G  256 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~-~a~~~----~ri~~~~gD~f-~~~p~--~  256 (273)
                      ...+.+..- ++...+|||+|||.|.++--++++.|-.+++.+|+-.-.. .....    ..+..+.+++- .+++.  .
T Consensus        63 L~ei~ek~~-l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~  141 (277)
T 3evf_A           63 LRWFHERGY-VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKC  141 (277)
T ss_dssp             HHHHHHTTS-SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCC
T ss_pred             HHHHHHhCC-CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCc
Confidence            344445533 6677899999999999999888877655555555421111 01111    13444455431 13443  3


Q ss_pred             CEEEeccccc
Q 024046          257 DAILMKVGNF  266 (273)
Q Consensus       257 D~~~l~~vLH  266 (273)
                      |+|+.-...+
T Consensus       142 DlVlsD~apn  151 (277)
T 3evf_A          142 DTLLCDIGES  151 (277)
T ss_dssp             SEEEECCCCC
T ss_pred             cEEEecCccC
Confidence            9988765443

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=92.83  E-value=0.091  Score=45.43  Aligned_cols=77  Identities=18%  Similarity=0.252  Sum_probs=50.6

Q ss_pred             hHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHh----CCCC--CCceEEEc-ccCCCCCC-
Q 024046          184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQD----APSY--AGVEHVGG-NMFESVPE-  255 (273)
Q Consensus       184 ~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~----a~~~--~ri~~~~g-D~f~~~p~-  255 (273)
                      ....+.+.+. +.....||||||+.|.++--.+....-.+++++|+-..--.    .+..  +-|+++.+ |++.--|. 
T Consensus        82 KL~ei~~~~~-l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~  160 (321)
T 3lkz_A           82 KLRWLVERRF-LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSEC  160 (321)
T ss_dssp             HHHHHHHTTS-CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCC
T ss_pred             HHHHHHHhcC-CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCC
Confidence            3445556554 66677999999999999997776666557899998221000    0111  44889988 97762222 


Q ss_pred             CCEEEe
Q 024046          256 GDAILM  261 (273)
Q Consensus       256 ~D~~~l  261 (273)
                      .|++++
T Consensus       161 ~D~ivc  166 (321)
T 3lkz_A          161 CDTLLC  166 (321)
T ss_dssp             CSEEEE
T ss_pred             CCEEEE
Confidence            587765

>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1

Probab=92.79  E-value=0.054  Score=49.88  Aligned_cols=66  Identities=20%  Similarity=0.208  Sum_probs=52.3

Q ss_pred             HHHhChhHHHHhC--CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           44 AIQLGVFEIIAKA--GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        44 a~elglfd~L~~~--g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      .-+..++..|.+.  ++.|..|||+.+++    ++..+.|+++-|...|++++.....+   -...+|+.++.+.
T Consensus       404 ~~q~~vl~~l~~~~~~~~~~~~l~~~~~~----~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~~~  474 (487)
T 1hsj_A          404 YEEIYILNHILRSESNEISSKEIAKCSEF----KPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANI  474 (487)
T ss_dssp             HHHHHHHHHHHTCSCSEEEHHHHHHSSCC----CHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHHHH
Confidence            3456678888887  78999999999999    99999999999999999997432122   2567787776554

>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}

Probab=92.73  E-value=0.57  Score=34.58  Aligned_cols=70  Identities=19%  Similarity=0.245  Sum_probs=53.5

Q ss_pred             HHHHHHHHhChhHHHHhCCCCCHHHHHHHh------CcCCCCCcchHHHHHHHHhcCCceeccccC-----CCcceecCh
Q 024046           39 MATQAAIQLGVFEIIAKAGELSAPEIAAQL------QAQNVKAPMMLDRMLRLLVSHRVLECSVSG-----GERLYALNP  107 (273)
Q Consensus        39 ~aL~~a~elglfd~L~~~g~~t~~eLA~~~------g~~~~~~~~~l~rlL~~L~~~gll~~~~~~-----~~~~y~lt~  107 (273)
                      +.+.-.+++=|+-.|.. +|.+.-+|++.+      ++    ++..+...|+-|...|+++.....     ....|++|+
T Consensus         6 ~l~~g~l~~~IL~lL~~-~p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~   80 (117)
T 4esf_A            6 EMLKGSLEGCVLEIISR-RETYGYEITRHLNDLGFTEV----VEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNE   80 (117)
T ss_dssp             HHHHHHHHHHHHHHHHH-SCBCHHHHHHHHHHHTCTTC----CHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECH
T ss_pred             HHHHChHHHHHHHHHHc-CCCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECH
Confidence            34455566667778877 799999999998      67    999999999999999999864210     113599999


Q ss_pred             hchHhh
Q 024046          108 VSKYFV  113 (273)
Q Consensus       108 ~s~~l~  113 (273)
                      .++..+
T Consensus        81 ~G~~~l   86 (117)
T 4esf_A           81 AGRQEL   86 (117)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            987654

>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55

Probab=92.66  E-value=0.11  Score=39.99  Aligned_cols=60  Identities=22%  Similarity=0.296  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChh
Q 024046           37 LPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV  108 (273)
Q Consensus        37 ~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~  108 (273)
                      ...||.+.+.+..    .. ++ |.++||+..++    ++..++++|..|...|++....  +.|.|.++..
T Consensus         8 ~~yAl~~L~~La~----~~-~~-s~~~IA~~~~i----~~~~l~kIl~~L~~aGlv~s~r--G~GGy~Lar~   67 (145)
T 1xd7_A            8 LAVAIHILSLISM----DE-KT-SSEIIADSVNT----NPVVVRRMISLLKKADILTSRA--GVPGASLKKD   67 (145)
T ss_dssp             HHHHHHHHHHHHT----CS-CC-CHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECCS--SSSSCEESSC
T ss_pred             HHHHHHHHHHHHh----CC-CC-CHHHHHHHHCc----CHHHHHHHHHHHHHCCceEeec--CCCCceecCC
Confidence            3445555554422    12 35 99999999999    9999999999999999998753  2566777653

>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61

Probab=92.58  E-value=0.29  Score=36.11  Aligned_cols=68  Identities=16%  Similarity=0.209  Sum_probs=52.9

Q ss_pred             HHHHHHhChhHHHHhCCCCCHHHHHHHhC--------cCCCCCc-chHHHHHHHHhcCCceeccccC----CCcceecCh
Q 024046           41 TQAAIQLGVFEIIAKAGELSAPEIAAQLQ--------AQNVKAP-MMLDRMLRLLVSHRVLECSVSG----GERLYALNP  107 (273)
Q Consensus        41 L~~a~elglfd~L~~~g~~t~~eLA~~~g--------~~~~~~~-~~l~rlL~~L~~~gll~~~~~~----~~~~y~lt~  107 (273)
                      +....++-|+..|.. +|.+.-+|++.+.        +    ++ ..+.+.|+-|...|+++.....    ..-.|.+|+
T Consensus        10 ~~~~~~~~IL~~L~~-~~~~gyel~~~l~~~g~~~~~i----s~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~   84 (118)
T 2esh_A           10 RGWWLASTILLLVAE-KPSHGYELAERLAEFGIEIPGI----GHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITP   84 (118)
T ss_dssp             HHHHHHHHHHHHHHH-SCBCHHHHHHHHHTTCCSSTTC----CCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECH
T ss_pred             ccchHHHHHHHHHHc-CCCCHHHHHHHHHHhCCcccCC----CCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEECh
Confidence            445567778888877 7999999999984        6    88 8999999999999999864211    113689999


Q ss_pred             hchHhh
Q 024046          108 VSKYFV  113 (273)
Q Consensus       108 ~s~~l~  113 (273)
                      .+...+
T Consensus        85 ~G~~~l   90 (118)
T 2esh_A           85 QGKLYL   90 (118)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887654

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=92.36  E-value=0.13  Score=43.58  Aligned_cols=33  Identities=18%  Similarity=0.330  Sum_probs=27.3

Q ss_pred             CcceEEEecCCccHHHHHHHHH-------CCC-----CeEEEeec
Q 024046          197 NVERLVDVGGGFGVTLSMITSK-------YPQ-----IKAVNFDL  229 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~-------~P~-----l~~~~~Dl  229 (273)
                      +..+|+|||+|+|..+..+++.       +|+     ++++.+|.
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~  104 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEK  104 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEES
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEEC
Confidence            4579999999999988887665       784     67898986

>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36

Probab=92.27  E-value=0.097  Score=39.56  Aligned_cols=45  Identities=16%  Similarity=0.161  Sum_probs=38.1

Q ss_pred             hChhHHHH-hCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           47 LGVFEIIA-KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        47 lglfd~L~-~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      ..++..|. ..++.|+.|||+.+|+    ++..+.++++.|...|+++..
T Consensus        29 ~~il~~L~~~~~~~t~~ela~~l~~----~~stvs~~l~~L~~~G~v~r~   74 (152)
T 1ku9_A           29 GAVYAILYLSDKPLTISDIMEELKI----SKGNVSMSLKKLEELGFVRKV   74 (152)
T ss_dssp             HHHHHHHHHCSSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence            34555664 2369999999999999    999999999999999999974

>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*

Probab=92.26  E-value=0.13  Score=39.55  Aligned_cols=63  Identities=16%  Similarity=0.279  Sum_probs=42.0

Q ss_pred             HhChhHHHHhC-----CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           46 QLGVFEIIAKA-----GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        46 elglfd~L~~~-----g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      +..++..|...     ++.|..+||+.+++    ++..+.++++-|...|+++..+. .+   -...+|+.++.+.
T Consensus        35 q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~----~~~tvsr~v~~Le~~glVr~~~~-~DrR~~~v~LT~~G~~~~  105 (148)
T 4fx0_A           35 QFSTLAVISLSEGSAGIDLTMSELAARIGV----ERTTLTRNLEVMRRDGLVRVMAG-ADARCKRIELTAKGRAAL  105 (148)
T ss_dssp             HHHHHHHHHC---------CHHHHHHHHTC----CHHHHHHHHHHHHHTTSBC------------CCBCHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeeCC-CCCCeeEEEECHHHHHHH
Confidence            34455566542     36899999999999    99999999999999999965321 22   2467787776554

>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}

Probab=91.90  E-value=0.17  Score=38.09  Aligned_cols=51  Identities=14%  Similarity=0.147  Sum_probs=43.7

Q ss_pred             HHHHHhChhHHHHhC-CCCCHHHHHHHh-----CcCCCCCcchHHHHHHHHhcCCceeccc
Q 024046           42 QAAIQLGVFEIIAKA-GELSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVLECSV   96 (273)
Q Consensus        42 ~~a~elglfd~L~~~-g~~t~~eLA~~~-----g~~~~~~~~~l~rlL~~L~~~gll~~~~   96 (273)
                      .+.-+.-|++.|.+. ++.|++||.+.+     ++    +..-+.|.|+.|+..|++.+..
T Consensus         9 ~T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i----s~~TVYR~L~~L~e~Glv~~~~   65 (131)
T 2o03_A            9 STRQRAAISTLLETLDDFRSAQELHDELRRRGENI----GLTTVYRTLQSMASSGLVDTLH   65 (131)
T ss_dssp             HHHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHTTTSEEEEE
T ss_pred             CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCEEEEE
Confidence            356677889999765 389999999999     66    8999999999999999999754

>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*

Probab=91.82  E-value=0.25  Score=37.94  Aligned_cols=60  Identities=12%  Similarity=0.188  Sum_probs=46.3

Q ss_pred             HHHHhChhHHHHhC-CCCCHHHHHHHh-----CcCCCCCcchHHHHHHHHhcCCceeccccC-CCcceecC
Q 024046           43 AAIQLGVFEIIAKA-GELSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVLECSVSG-GERLYALN  106 (273)
Q Consensus        43 ~a~elglfd~L~~~-g~~t~~eLA~~~-----g~~~~~~~~~l~rlL~~L~~~gll~~~~~~-~~~~y~lt  106 (273)
                      +..+.-|++.|... ++.|++||.+.+     ++    +..-+.|.|+.|+..|++.+.... +..+|.++
T Consensus        21 T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~   87 (145)
T 2fe3_A           21 TPQRHAILEYLVNSMAHPTADDIYKALEGKFPNM----SVATVYNNLRVFRESGLVKELTYGDASSRFDFV   87 (145)
T ss_dssp             CHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTC----CHHHHHHHHHHHHHTTSEEEECCTTSCCEEEEC
T ss_pred             CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC----ChhhHHHHHHHHHHCCCEEEEeeCCCceEEECC
Confidence            44566689999764 499999999999     56    889999999999999999975321 12357654

>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}

Probab=91.76  E-value=0.17  Score=40.81  Aligned_cols=40  Identities=28%  Similarity=0.222  Sum_probs=34.9

Q ss_pred             HHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           52 IIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        52 ~L~~~g-~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      .+.+.| |.|..|||+.+|+    +...+.+.|+.|...|++...
T Consensus        17 ~~~~~g~~~s~~eia~~lgl----~~~tv~~~l~~Le~~G~i~~~   57 (196)
T 3k2z_A           17 FIEKNGYPPSVREIARRFRI----TPRGALLHLIALEKKGYIERK   57 (196)
T ss_dssp             HHHHHSSCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECC
T ss_pred             HHHHhCCCCCHHHHHHHcCC----CcHHHHHHHHHHHHCCCEEec
Confidence            344446 8999999999999    888999999999999999973

>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19

Probab=91.60  E-value=0.16  Score=34.53  Aligned_cols=53  Identities=11%  Similarity=0.064  Sum_probs=40.6

Q ss_pred             hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecC
Q 024046           49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN  106 (273)
Q Consensus        49 lfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt  106 (273)
                      .++.|.+.+..|+.+||+++|+    +...+.|+|.-|...|.+....+ .+-.|..+
T Consensus        20 ~i~~L~~~~~~Ta~~IAkkLg~----sK~~vNr~LY~L~kkG~V~~~~~-~PP~W~~~   72 (75)
T 1sfu_A           20 EVLSLNTNDYTTAISLSNRLKI----NKKKINQQLYKLQKEDTVKMVPS-NPPKWFKN   72 (75)
T ss_dssp             HHHTSCTTCEECHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEECC-SSCEEEEC
T ss_pred             HHHhCCCCcchHHHHHHHHHCC----CHHHHHHHHHHHHHCCCEecCCC-CCCCccCC
Confidence            3446666335999999999999    99999999999999999986431 33345444

>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A

Probab=91.12  E-value=0.43  Score=39.78  Aligned_cols=54  Identities=7%  Similarity=0.093  Sum_probs=44.9

Q ss_pred             HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecCh
Q 024046           46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP  107 (273)
Q Consensus        46 elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~  107 (273)
                      +.-|.-.|.. |+.|+++||+.+|+    +++-+...|.-|...|+++.   ..+++..+..
T Consensus       167 ~~~l~~~l~~-~~~t~~~la~~~~l----~~~~V~~~l~~L~~~~~v~~---~~~~~~~~~~  220 (232)
T 2qlz_A          167 LAILHYLLLN-GRATVEELSDRLNL----KEREVREKISEMARFVPVKI---INDNTVVLDE  220 (232)
T ss_dssp             HHHHHHHHHS-SEEEHHHHHHHHTC----CHHHHHHHHHHHTTTSCEEE---ETTTEEEECH
T ss_pred             HHHHHHHHhc-CCCCHHHHHHHhCc----CHHHHHHHHHHHHhcCCeEE---ecCCeEEecH
Confidence            3446666765 79999999999999    99999999999999999976   3667776655

>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85

Probab=91.00  E-value=0.17  Score=35.87  Aligned_cols=45  Identities=18%  Similarity=0.349  Sum_probs=39.5

Q ss_pred             HhChhHHHHhCC--CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           46 QLGVFEIIAKAG--ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        46 elglfd~L~~~g--~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      ++.|+..|.+.|  .++..|||+.+++    +..-+.++|+.|...|++.+
T Consensus        22 q~~Vl~~I~~~g~~gi~qkeLa~~~~l----~~~tvt~iLk~LE~kglIkr   68 (91)
T 2dk5_A           22 EKLVYQIIEDAGNKGIWSRDVRYKSNL----PLTEINKILKNLESKKLIKA   68 (91)
T ss_dssp             HHHHHHHHHHHCTTCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHHHHcCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE
Confidence            445777787644  8999999999999    99999999999999999984

>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*

Probab=90.95  E-value=0.6  Score=34.34  Aligned_cols=71  Identities=11%  Similarity=0.173  Sum_probs=54.2

Q ss_pred             HHHHHHHHHhChhHHHHhCCCCCHHHHHHHh--------CcCCCCCcchHHHHHHHHhcCCceecccc---C--CCccee
Q 024046           38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQL--------QAQNVKAPMMLDRMLRLLVSHRVLECSVS---G--GERLYA  104 (273)
Q Consensus        38 ~~aL~~a~elglfd~L~~~g~~t~~eLA~~~--------g~~~~~~~~~l~rlL~~L~~~gll~~~~~---~--~~~~y~  104 (273)
                      .+.+.-.+++=|+..|.+ +|.+--+|.+.+        ++    ++..+.+.|+-|...|+++....   .  ....|+
T Consensus         6 ~~~~~g~l~~~IL~~L~~-~~~~Gyei~~~l~~~~~~~~~i----~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~   80 (116)
T 3f8b_A            6 KEMLRAQTNVILLNVLKQ-GDNYVYGIIKQVKEASNGEMEL----NEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYR   80 (116)
T ss_dssp             HHHHHHHHHHHHHHHHHH-CCBCHHHHHHHHHHHTTTCCCC----CHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEE
T ss_pred             HHHHhchHHHHHHHHHHh-CCCCHHHHHHHHHHHhCCCCCC----CcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEE
Confidence            345555567777788887 799999999988        56    89999999999999999986421   0  113599


Q ss_pred             cChhchHhh
Q 024046          105 LNPVSKYFV  113 (273)
Q Consensus       105 lt~~s~~l~  113 (273)
                      +|+.++..+
T Consensus        81 LT~~G~~~l   89 (116)
T 3f8b_A           81 LTEIGHENM   89 (116)
T ss_dssp             ECHHHHHHH
T ss_pred             ECHHHHHHH
Confidence            999987654

>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0

Probab=90.73  E-value=0.26  Score=35.75  Aligned_cols=66  Identities=15%  Similarity=0.198  Sum_probs=50.4

Q ss_pred             HHHHhChhHHHHhCCCCCHHHHHHHh----CcCCCCCcchHHHHHHHHhcCCceeccccCCC----cceecChhchHhh
Q 024046           43 AAIQLGVFEIIAKAGELSAPEIAAQL----QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE----RLYALNPVSKYFV  113 (273)
Q Consensus        43 ~a~elglfd~L~~~g~~t~~eLA~~~----g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~----~~y~lt~~s~~l~  113 (273)
                      -.+++-|+..|.. +|.+.-+|++.+    ++    ++..+.++|+-|...|+++......+    ..|++|+.++..+
T Consensus         8 g~l~~~IL~~L~~-~~~~gyel~~~l~~~~~i----~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l   81 (108)
T 3l7w_A            8 LLIEYLILAIVSK-HDSYGYDISQTIKLIASI----KESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHL   81 (108)
T ss_dssp             HHHHHHHHHHHHH-SCEEHHHHHHHHTTTCCC----CHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHHc-CCCcHHHHHHHHHHHhCC----CcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHH
Confidence            3456667778877 799988888885    67    99999999999999999986421112    2589999887654

>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0

Probab=90.59  E-value=0.85  Score=33.55  Aligned_cols=71  Identities=15%  Similarity=0.118  Sum_probs=54.1

Q ss_pred             HHHHHHHHHhChhHHHHhCCCCCHHHHHHHh------CcCCCCCcchHHHHHHHHhcCCceeccccC-CC----cceecC
Q 024046           38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQL------QAQNVKAPMMLDRMLRLLVSHRVLECSVSG-GE----RLYALN  106 (273)
Q Consensus        38 ~~aL~~a~elglfd~L~~~g~~t~~eLA~~~------g~~~~~~~~~l~rlL~~L~~~gll~~~~~~-~~----~~y~lt  106 (273)
                      ++.+.-.+++=|+..|.+ +|.+--+|++.+      ++    ++..+...|+-|...|+++..... ..    ..|++|
T Consensus         7 ~~l~~g~l~~~IL~lL~~-~p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT   81 (116)
T 3hhh_A            7 TELLKGILEGLVLAIIQR-KETYGYEITKILNDQGFTEI----VEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLT   81 (116)
T ss_dssp             HHHHTTHHHHHHHHHHHH-SCBCHHHHHHHHHTTSCSSC----CHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEEC
T ss_pred             HHHHhhhHHHHHHHHHhc-CCCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEEC
Confidence            445555566667778887 799999999998      56    899999999999999999864210 11    259999


Q ss_pred             hhchHhh
Q 024046          107 PVSKYFV  113 (273)
Q Consensus       107 ~~s~~l~  113 (273)
                      +.++..+
T Consensus        82 ~~G~~~l   88 (116)
T 3hhh_A           82 SSGEAEL   88 (116)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9987654

>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1

Probab=90.41  E-value=0.3  Score=39.10  Aligned_cols=58  Identities=16%  Similarity=0.192  Sum_probs=46.4

Q ss_pred             HHHHhChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCc-eeccccCCCcceecChh
Q 024046           43 AAIQLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRV-LECSVSGGERLYALNPV  108 (273)
Q Consensus        43 ~a~elglfd~L~~~-g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gl-l~~~~~~~~~~y~lt~~  108 (273)
                      .-....|++.|.+. ++.|+.|||+.+|+    +.+.+.|-++.|...|+ +..    ..+.|.+++.
T Consensus        20 ~~R~~~Il~~L~~~~~~~s~~eLa~~l~v----S~~Ti~rdi~~L~~~G~~I~~----~~~Gy~l~~~   79 (187)
T 1j5y_A           20 QERLKSIVRILERSKEPVSGAQLAEELSV----SRQVIVQDIAYLRSLGYNIVA----TPRGYVLAGG   79 (187)
T ss_dssp             HHHHHHHHHHHHHCSSCBCHHHHHHHHTS----CHHHHHHHHHHHHHHTCCCEE----ETTEEECCTT
T ss_pred             HHHHHHHHHHHHHcCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE----ECCEEEECCc
Confidence            34566788999864 47999999999999    99999999999999999 764    2345766653

>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39

Probab=90.40  E-value=0.27  Score=37.21  Aligned_cols=51  Identities=12%  Similarity=0.107  Sum_probs=41.6

Q ss_pred             HHhChhHHHHh-CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           45 IQLGVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        45 ~elglfd~L~~-~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      .+..|+..|.. .++.|..||++.++...+.++..+.++|+-|...|++.+.
T Consensus        10 ~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~   61 (138)
T 2g9w_A           10 LERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQI   61 (138)
T ss_dssp             HHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEE
Confidence            46677888877 4799999999999821111899999999999999999974

>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A

Probab=90.39  E-value=0.3  Score=32.40  Aligned_cols=46  Identities=20%  Similarity=0.275  Sum_probs=40.4

Q ss_pred             HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcch-HHHHHHHHhcCCceecc
Q 024046           46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMM-LDRMLRLLVSHRVLECS   95 (273)
Q Consensus        46 elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~-l~rlL~~L~~~gll~~~   95 (273)
                      +-.|++.|...||-++=.||+.+|+    .... +.+.|..|...|++..+
T Consensus        12 ee~I~~fL~~~Gp~~AL~IAK~LGl----ktAK~VNp~LY~m~~~~lL~~D   58 (72)
T 3eyi_A           12 EEDIYRFLKDNGPQRALVIAQALGM----RTAKDVNRDLYRMKSRHLLDMD   58 (72)
T ss_dssp             HHHHHHHHHHHCSEEHHHHHHHTTC----CSGGGTHHHHHHHHHTTSEEEC
T ss_pred             HHHHHHHHHHcCCchHHHHHHHhCc----chhhhcCHHHHHHHHccCcCCC
Confidence            5568899999999999999999999    5554 99999999999999764

>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}

Probab=90.27  E-value=0.26  Score=36.99  Aligned_cols=33  Identities=15%  Similarity=0.216  Sum_probs=31.5

Q ss_pred             CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        58 ~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      ..|.++||+.+|+    ++..+.+.++.|...|++..
T Consensus        51 ~ps~~~LA~~l~~----s~~~V~~~l~~Le~kGlI~~   83 (128)
T 2vn2_A           51 FPTPAELAERMTV----SAAECMEMVRRLLQKGMIAI   83 (128)
T ss_dssp             SCCHHHHHHTSSS----CHHHHHHHHHHHHHTTSSEE
T ss_pred             CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence            4799999999999    99999999999999999997

>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A

Probab=90.21  E-value=0.16  Score=37.53  Aligned_cols=51  Identities=18%  Similarity=0.239  Sum_probs=41.9

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      .+..|+..|.+.||.|..|||+.++...+.++..+.++|+-|...|++.+.
T Consensus        11 ~q~~vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~   61 (126)
T 1sd4_A           11 AEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRY   61 (126)
T ss_dssp             HHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEE
Confidence            456677888877899999999999741122788999999999999999974

>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61

Probab=89.91  E-value=0.3  Score=37.63  Aligned_cols=68  Identities=10%  Similarity=0.178  Sum_probs=52.4

Q ss_pred             HHHHHHhChhHHHHhCCCCCHHHHHHHh--------CcCCCCCcchHHHHHHHHhcCCceeccccC-----CCcceecCh
Q 024046           41 TQAAIQLGVFEIIAKAGELSAPEIAAQL--------QAQNVKAPMMLDRMLRLLVSHRVLECSVSG-----GERLYALNP  107 (273)
Q Consensus        41 L~~a~elglfd~L~~~g~~t~~eLA~~~--------g~~~~~~~~~l~rlL~~L~~~gll~~~~~~-----~~~~y~lt~  107 (273)
                      +.-..++-|+..|.. +|.+.-+|++.+        ++    ++..+.+.|+-|...|+|+.....     ..-.|.+|+
T Consensus        38 ~~g~~~~~IL~~L~~-~~~~gyeI~~~l~~~~~~~~~i----s~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~  112 (145)
T 1xma_A           38 IRGYVDTIILSLLIE-GDSYGYEISKNIRIKTDELYVI----KETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITP  112 (145)
T ss_dssp             GGGTHHHHHHHHHHH-CCEEHHHHHHHHHHHHTTSCCC----CHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECH
T ss_pred             hcCcHHHHHHHHHHh-CCCCHHHHHHHHHHhhCCccCc----ChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECH
Confidence            344566777788876 799999999988        47    999999999999999999864211     113699999


Q ss_pred             hchHhh
Q 024046          108 VSKYFV  113 (273)
Q Consensus       108 ~s~~l~  113 (273)
                      .++.++
T Consensus       113 ~G~~~l  118 (145)
T 1xma_A          113 EGIKYY  118 (145)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887654

>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A

Probab=89.80  E-value=0.29  Score=40.56  Aligned_cols=47  Identities=15%  Similarity=0.246  Sum_probs=41.1

Q ss_pred             CHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhh
Q 024046           60 SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV  113 (273)
Q Consensus        60 t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~  113 (273)
                      +..+||+.+++    ++..+.++++-|...|++++.   .+..+.+|+.+..+.
T Consensus        26 ~~~~La~~l~v----s~~tvs~~l~~Le~~GlV~r~---~~~~v~LT~~G~~~~   72 (230)
T 1fx7_A           26 LRARIAERLDQ----SGPTVSQTVSRMERDGLLRVA---GDRHLELTEKGRALA   72 (230)
T ss_dssp             CHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC---TTSCEEECHHHHHHH
T ss_pred             cHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe---CCccEEECHHHHHHH
Confidence            44999999999    999999999999999999983   446789999987654

>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28

Probab=89.67  E-value=0.32  Score=41.04  Aligned_cols=65  Identities=12%  Similarity=0.113  Sum_probs=50.9

Q ss_pred             HHhChhHHHHhCC--CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           45 IQLGVFEIIAKAG--ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        45 ~elglfd~L~~~g--~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      .+..++..|...+  +.|..|||+.+++    ++..+.++++-|...|++++.....+   -...+|+.+..+.
T Consensus       159 ~q~~vL~~L~~~~~~~~t~~eLa~~l~i----~~~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~  228 (250)
T 1p4x_A          159 VEFTILAIITSQNKNIVLLKDLIETIHH----KYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHA  228 (250)
T ss_dssp             HHHHHHHHHHTTTTCCEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHH
Confidence            4555778887654  4899999999999    99999999999999999997532122   2577888876654

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=89.67  E-value=1.6  Score=39.27  Aligned_cols=69  Identities=19%  Similarity=0.347  Sum_probs=40.9

Q ss_pred             CCCcceEEEecCCccHHHHHHHHH---C----CCCeEEEeechHHHHhCC-----CCCCceEEEcccCCCCCCCCEEEec
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSK---Y----PQIKAVNFDLPHVVQDAP-----SYAGVEHVGGNMFESVPEGDAILMK  262 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~---~----P~l~~~~~Dlp~v~~~a~-----~~~ri~~~~gD~f~~~p~~D~~~l~  262 (273)
                      .+..-.||++|+|+|.++..+++.   +    ..++.+++|....+...+     ..++|+..  |-+.++|.+.++++.
T Consensus        78 ~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~~~v~W~--~~l~~lp~~~~~viA  155 (387)
T 1zkd_A           78 EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIRNIHWH--DSFEDVPEGPAVILA  155 (387)
T ss_dssp             CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTCSSEEEE--SSGGGSCCSSEEEEE
T ss_pred             CCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCCCCeEEe--CChhhcCCCCeEEEe
Confidence            344568999999999999988765   2    356789999833332211     12344432  333345555555555


Q ss_pred             ccc
Q 024046          263 VGN  265 (273)
Q Consensus       263 ~vL  265 (273)
                      |=+
T Consensus       156 NE~  158 (387)
T 1zkd_A          156 NEY  158 (387)
T ss_dssp             ESS
T ss_pred             ccc
Confidence            433

>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6

Probab=89.52  E-value=0.19  Score=36.00  Aligned_cols=53  Identities=21%  Similarity=0.231  Sum_probs=40.9

Q ss_pred             HHHHHHHHhChhH-HHHhCCCC-CHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           39 MATQAAIQLGVFE-IIAKAGEL-SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        39 ~aL~~a~elglfd-~L~~~g~~-t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      ..++..++..|.+ .+.....+ |..+||+.+|+    +...+++.|+.|...|+++..
T Consensus        14 ~~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~v----Sr~tvr~al~~L~~~Gli~~~   68 (102)
T 1v4r_A           14 ADVATHFRTLIKSGELAPGDTLPSVADIRAQFGV----AAKTVSRALAVLKSEGLVSSR   68 (102)
T ss_dssp             HHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSS----CTTHHHHHTTTTTTSSCCEEE
T ss_pred             HHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence            3445555666665 34442255 99999999999    999999999999999999864

>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}

Probab=89.36  E-value=0.37  Score=37.08  Aligned_cols=45  Identities=11%  Similarity=0.109  Sum_probs=40.8

Q ss_pred             HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        46 elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      +-.|.+.|. .|+.|+.+||+.+|+    +-....-.|..|.-.|++.+.
T Consensus        13 k~~ILE~Lk-~G~~~t~~Iak~LGl----Shg~aq~~Ly~LeREG~V~~V   57 (165)
T 2vxz_A           13 LRDILALLA-DGCKTTSLIQQRLGL----SHGRAKALIYVLEKEGRVTRV   57 (165)
T ss_dssp             HHHHHHHHT-TCCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSCEEE
T ss_pred             HHHHHHHHH-hCCccHHHHHHHhCC----cHHHHHHHHHHHHhcCceEEE
Confidence            345788898 599999999999999    999999999999999999985

>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}

Probab=89.36  E-value=0.37  Score=35.59  Aligned_cols=71  Identities=14%  Similarity=0.212  Sum_probs=54.9

Q ss_pred             HHHHHHHHHhChhHHHHhCCCCCHHHHHHHhC------cCCCCCcchHHHHHHHHhcCCceecccc---CCC--cceecC
Q 024046           38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQLQ------AQNVKAPMMLDRMLRLLVSHRVLECSVS---GGE--RLYALN  106 (273)
Q Consensus        38 ~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g------~~~~~~~~~l~rlL~~L~~~gll~~~~~---~~~--~~y~lt  106 (273)
                      .+.+.-.+++-|+..|.. +|.+.-+|++.+.      +    ++..+.+.|+-|...|+++....   .++  ..|++|
T Consensus         8 ~~l~~g~l~~~IL~lL~~-~p~~gyel~~~l~~~~~~~i----~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT   82 (117)
T 3elk_A            8 ERILHGLITLYILKELVK-RPMHGYELQKSMFETTGQAL----PQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHIT   82 (117)
T ss_dssp             CHHHHHHHHHHHHHHHHH-SCEEHHHHHHHHHHHHSCCC----CTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEEC
T ss_pred             HHHHhhHHHHHHHHHHHc-CCCCHHHHHHHHHHHhCCCC----CcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEEC
Confidence            345555667778888887 7999999999987      6    88999999999999999986421   011  269999


Q ss_pred             hhchHhh
Q 024046          107 PVSKYFV  113 (273)
Q Consensus       107 ~~s~~l~  113 (273)
                      +.++..+
T Consensus        83 ~~G~~~l   89 (117)
T 3elk_A           83 DAGKKFL   89 (117)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9997654

>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...

Probab=89.31  E-value=0.7  Score=38.10  Aligned_cols=50  Identities=10%  Similarity=0.214  Sum_probs=42.5

Q ss_pred             CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhhc
Q 024046           58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS  114 (273)
Q Consensus        58 ~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~~  114 (273)
                      +.+..+||+.+++    ++..+.++++-|...|++++.   ....+.+|+.++.+..
T Consensus        24 ~~~~~~la~~l~v----s~~tvs~~l~~Le~~GlV~r~---~~~~v~LT~~G~~~~~   73 (226)
T 2qq9_A           24 TPLRARIAERLEQ----SGPTVSQTVARMERDGLVVVA---SDRSLQMTPTGRTLAT   73 (226)
T ss_dssp             CCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC---TTSBEEECHHHHHHHH
T ss_pred             CccHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe---CCCCeEECHHHHHHHH
Confidence            3456999999999    999999999999999999983   4567999999876543

>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61

Probab=89.25  E-value=0.58  Score=37.10  Aligned_cols=63  Identities=10%  Similarity=0.296  Sum_probs=49.0

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHh--------CcCCCCCcchHHHHHHHHhcCCceeccccC-----CCcceecChhchH
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQL--------QAQNVKAPMMLDRMLRLLVSHRVLECSVSG-----GERLYALNPVSKY  111 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~--------g~~~~~~~~~l~rlL~~L~~~gll~~~~~~-----~~~~y~lt~~s~~  111 (273)
                      +++-|+..|.. ||.+.-||++.+        ++    ++..+.+.|+-|...|+++.....     ....|++|+.++.
T Consensus         3 l~~~iL~lL~~-~~~~gyel~~~l~~~~~~~~~~----s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G~~   77 (179)
T 1yg2_A            3 LPHVILTVLST-RDATGYDITKEFSASIGYFWKA----SHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRS   77 (179)
T ss_dssp             HHHHHHHHHHH-CCBCHHHHHHHHTTGGGGTCCC----CHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHHH
T ss_pred             hHHHHHHHHhc-CCCCHHHHHHHHHHHhCCccCC----CcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHHHH
Confidence            45567778887 799999999999        46    899999999999999999863211     1136999999874


Q ss_pred             h
Q 024046          112 F  112 (273)
Q Consensus       112 l  112 (273)
                      .
T Consensus        78 ~   78 (179)
T 1yg2_A           78 A   78 (179)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}

Probab=89.09  E-value=0.47  Score=36.08  Aligned_cols=66  Identities=17%  Similarity=0.163  Sum_probs=48.1

Q ss_pred             HHHHHhChhHHHHhC-CCCCHHHHHHHhCcC-CCCCcchHHHHHHHHhcCCceecccc-CCCcceecCh
Q 024046           42 QAAIQLGVFEIIAKA-GELSAPEIAAQLQAQ-NVKAPMMLDRMLRLLVSHRVLECSVS-GGERLYALNP  107 (273)
Q Consensus        42 ~~a~elglfd~L~~~-g~~t~~eLA~~~g~~-~~~~~~~l~rlL~~L~~~gll~~~~~-~~~~~y~lt~  107 (273)
                      .+.-+.-|++.|.+. ++.|++||.+.+.-. +.++..-+.|.|+.|+..|++.+... .+..+|.++.
T Consensus        12 ~T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y~~~~   80 (139)
T 3mwm_A           12 ATRQRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRTAEGESVYRRCS   80 (139)
T ss_dssp             HHHHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEECTTSCEEEECCS
T ss_pred             cCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEcCCCceEEEECC
Confidence            355677789999775 499999999988321 12288899999999999999997532 1224676543

>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}

Probab=89.02  E-value=0.34  Score=30.84  Aligned_cols=45  Identities=11%  Similarity=0.195  Sum_probs=40.0

Q ss_pred             HhChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           46 QLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        46 elglfd~L~~~g-~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      |-.|++.|..+| -+.++..|+..|+    +.+.+..+|+-|...|++..
T Consensus        12 e~~lL~yIr~sGGildI~~~a~kygV----~kdeV~~~LrrLe~KGLI~l   57 (59)
T 2xvc_A           12 ERELLDYIVNNGGFLDIEHFSKVYGV----EKQEVVKLLEALKNKGLIAV   57 (59)
T ss_dssp             HHHHHHHHHHTTSEEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHHHHcCCEEeHHHHHHHhCC----CHHHHHHHHHHHHHCCCeec
Confidence            445788888876 7899999999999    99999999999999999874

>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}

Probab=88.90  E-value=0.52  Score=36.33  Aligned_cols=60  Identities=17%  Similarity=0.268  Sum_probs=47.1

Q ss_pred             HHHHhChhHHHHhC-CCCCHHHHHHHh-----CcCCCCCcchHHHHHHHHhcCCceecccc-CCCcceecC
Q 024046           43 AAIQLGVFEIIAKA-GELSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVLECSVS-GGERLYALN  106 (273)
Q Consensus        43 ~a~elglfd~L~~~-g~~t~~eLA~~~-----g~~~~~~~~~l~rlL~~L~~~gll~~~~~-~~~~~y~lt  106 (273)
                      +.-+.-|++.|... ++.|++||.+.+     ++    +..-+.|.|+.|+..|++.+... .+..+|..+
T Consensus        26 T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~   92 (150)
T 2xig_A           26 SKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNT----SISSVYRILNFLEKENFISVLETSKSGRRYEIA   92 (150)
T ss_dssp             HHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEETTTEEEEEES
T ss_pred             CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCcEEEEEeCCCceEEEec
Confidence            56777789999875 499999999998     56    88999999999999999997532 112356653

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=88.36  E-value=0.49  Score=40.89  Aligned_cols=44  Identities=16%  Similarity=0.219  Sum_probs=34.0

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL  229 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl  229 (273)
                      ...+.+. ..+.+..++||+||+.|.++-.++++.+-..++++|+
T Consensus        70 L~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdl  113 (300)
T 3eld_A           70 IRWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTL  113 (300)
T ss_dssp             HHHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECC
T ss_pred             HHHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEe
Confidence            3344444 4466789999999999999999998877656677777

>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42

Probab=88.35  E-value=0.51  Score=35.70  Aligned_cols=60  Identities=15%  Similarity=0.275  Sum_probs=46.0

Q ss_pred             HHHHhChhHHHHhC--CCCCHHHHHHHh-----CcCCCCCcchHHHHHHHHhcCCceecccc-CCCcceecC
Q 024046           43 AAIQLGVFEIIAKA--GELSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVLECSVS-GGERLYALN  106 (273)
Q Consensus        43 ~a~elglfd~L~~~--g~~t~~eLA~~~-----g~~~~~~~~~l~rlL~~L~~~gll~~~~~-~~~~~y~lt  106 (273)
                      +..+.-|++.|.+.  ++.|++||.+.+     ++    +..-+.|.|+.|+..|++.+... .+..+|.++
T Consensus        17 T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~   84 (136)
T 1mzb_A           17 TLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDV----GLATVYRVLTQFEAAGLVVRHNFDGGHAVFELA   84 (136)
T ss_dssp             CHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEECSSSSSCEEEES
T ss_pred             CHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCC----CHHHHHHHHHHHHHCCcEEEEEeCCCceEEEeC
Confidence            34566688899764  489999999999     56    88999999999999999997532 122457653

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=88.33  E-value=1.6  Score=37.47  Aligned_cols=34  Identities=15%  Similarity=-0.006  Sum_probs=27.8

Q ss_pred             CCcceEEEecCCccHHHHHHHHHC-----CCCeEEEeec
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKY-----PQIKAVNFDL  229 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~-----P~l~~~~~Dl  229 (273)
                      ..+..||++|...|..++.+++..     |+-+++++|.
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~Dt  143 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADS  143 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEEC
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEEC
Confidence            457899999999999888776654     5788999994

>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*

Probab=88.26  E-value=0.43  Score=41.72  Aligned_cols=56  Identities=16%  Similarity=0.214  Sum_probs=44.9

Q ss_pred             HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecCh
Q 024046           46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP  107 (273)
Q Consensus        46 elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~  107 (273)
                      +..|++.|.+.++.|.++||+.+|+    +++.++|-++.|...|++.+..  ....|++.+
T Consensus         7 ~~~Il~~L~~~~~~s~~eLa~~l~v----S~~ti~r~l~~L~~~G~~i~~~--~g~GY~l~~   62 (321)
T 1bia_A            7 PLKLIALLANGEFHSGEQLGETLGM----SRAAINKHIQTLRDWGVDVFTV--PGKGYSLPE   62 (321)
T ss_dssp             HHHHHHHHTTSSCBCHHHHHHHHTS----CHHHHHHHHHHHHHTTCCCEEE--TTTEEECSS
T ss_pred             HHHHHHHHHcCCCcCHHHHHHHHCC----CHHHHHHHHHHHHhCCCcEEEe--cCCCcEEee
Confidence            4457888877568999999999999    9999999999999999986431  233577754

>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}

Probab=88.04  E-value=1.1  Score=28.54  Aligned_cols=43  Identities=26%  Similarity=0.237  Sum_probs=38.7

Q ss_pred             CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChh
Q 024046           58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV  108 (273)
Q Consensus        58 ~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~  108 (273)
                      ++|+.|+|...|+    +-...+.-|+.|...|-+.+    +..+|++.|-
T Consensus        18 GMTaGEVAA~f~w----~Le~ar~aLeqLf~~G~LRK----RsSRYrlkph   60 (68)
T 3i71_A           18 GMTAGEVAAHFGW----PLEKARNALEQLFSAGTLRK----RSSRYRLKPH   60 (68)
T ss_dssp             CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE----ECCEEEECC-
T ss_pred             cccHHHHHHHhCC----cHHHHHHHHHHHHhcchhhh----hccccccCcc
Confidence            8999999999999    99999999999999999995    6788988763

>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10

Probab=87.95  E-value=0.31  Score=43.48  Aligned_cols=69  Identities=13%  Similarity=0.249  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecccc-----C-CCcceecChhch
Q 024046           37 LPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS-----G-GERLYALNPVSK  110 (273)
Q Consensus        37 ~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~-----~-~~~~y~lt~~s~  110 (273)
                      ...+++...+..|++.|. .|+.|..|||+.+|+    ++..+.++++-|...|++.+...     . ....|++++...
T Consensus        13 ~~~~~~~~~~~~il~~l~-~~~~sr~~la~~~gl----s~~tv~~~v~~L~~~gli~~~~~~~~~~GR~~~~l~~~~~~~   87 (380)
T 2hoe_A           13 MPKSVRAENISRILKRIM-KSPVSRVELAEELGL----TKTTVGEIAKIFLEKGIVVEEKDSPKGVGRPTKSLKISPNCA   87 (380)
T ss_dssp             ---------CCCSHHHHH-HSCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEEECCC----CCCEEEEECGGGC
T ss_pred             CchhHHHHHHHHHHHHHH-cCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeecCCCCCCCCCceEEEEccCCC
Confidence            456677777888999999 799999999999999    99999999999999999987431     0 112477777654

>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8

Probab=87.80  E-value=0.1  Score=46.21  Aligned_cols=62  Identities=8%  Similarity=0.042  Sum_probs=0.0

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhhc
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS  114 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~~  114 (273)
                      -+..++..|...++.|..|||+.+|+    ++.-++|.|+.|...|+++.    ......+|+.++.+..
T Consensus        21 r~~~iL~~l~~~~~~t~~eLa~~l~v----s~~Tv~r~l~~Le~~Glv~~----~~~gi~LT~~G~~~~~   82 (345)
T 2o0m_A           21 ERFQILRNIYWMQPIGRRSLSETMGI----TERVLRTETDVLKQLNLIEP----SKSGMTLTERGLEVYQ   82 (345)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE----EecceEEcHHHHHHHH
Confidence            35567788877789999999999999    99999999999999999974    2233667877765553

>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*

Probab=87.38  E-value=0.77  Score=33.05  Aligned_cols=41  Identities=22%  Similarity=0.305  Sum_probs=35.1

Q ss_pred             HHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhc
Q 024046           43 AAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVS   88 (273)
Q Consensus        43 ~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~   88 (273)
                      .+.++||+..|.. |++|-.|||+.+|+    +...+.|+=|.|..
T Consensus        44 l~~R~~l~~~L~~-ge~TQREIA~~lGi----S~stISRi~r~L~~   84 (101)
T 1jhg_A           44 LGTRVRIIEELLR-GEMSQRELKNELGA----GIATITRGSNSLKA   84 (101)
T ss_dssp             HHHHHHHHHHHHH-CCSCHHHHHHHHCC----CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc-CCcCHHHHHHHHCC----ChhhhhHHHHHHHH
Confidence            4567899999987 78999999999999    99999888777653

>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A

Probab=87.19  E-value=0.6  Score=41.91  Aligned_cols=51  Identities=14%  Similarity=0.276  Sum_probs=44.9

Q ss_pred             HHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           41 TQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        41 L~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      ++..-+..|++.|...|+.|..|||+.+|+    +...+.++++-|...|++.+.
T Consensus        13 ~r~~n~~~il~~l~~~~~~sr~~la~~~~l----s~~tv~~~v~~L~~~g~i~~~   63 (406)
T 1z6r_A           13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQL----APASITKIVHEMLEAHLVQEL   63 (406)
T ss_dssp             HHHHHHHHHHHHHHSSCSCCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEC
T ss_pred             HHHhHHHHHHHHHHHcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEee
Confidence            444455568999998889999999999999    999999999999999999874

>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2

Probab=87.14  E-value=0.75  Score=37.40  Aligned_cols=49  Identities=18%  Similarity=0.157  Sum_probs=42.4

Q ss_pred             CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhh
Q 024046           57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV  113 (273)
Q Consensus        57 g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~  113 (273)
                      +|.+..+||+.+|+    .++.++..++.|...|+++..   . +...+|+.++.+.
T Consensus        29 ~~V~~~~LA~~Lgv----S~~SV~~~lkkL~e~GLV~~~---~-~Gv~LTe~G~~~A   77 (200)
T 2p8t_A           29 EPLGRKQISERLEL----GEGSVRTLLRKLSHLDIIRSK---Q-RGHFLTLKGKEIR   77 (200)
T ss_dssp             SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC------CEEECHHHHHHH
T ss_pred             CCccHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe---C-CCeEECHHHHHHH
Confidence            58999999999999    999999999999999999973   3 7788999987443

>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10

Probab=86.37  E-value=0.68  Score=41.95  Aligned_cols=51  Identities=16%  Similarity=0.331  Sum_probs=45.3

Q ss_pred             HHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           41 TQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        41 L~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      ++..-+..|++.|...|+.|..|||+.+|+    +...+.++++-|...|++.+.
T Consensus        36 ~r~~n~~~il~~l~~~~~~sr~ela~~~gl----s~~tv~~~v~~L~~~gli~~~   86 (429)
T 1z05_A           36 IKQINAGRVYKLIDQKGPISRIDLSKESEL----APASITKITRELIDAHLIHET   86 (429)
T ss_dssp             HHHHHHHHHHHHHHHHCSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHHHHHcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec
Confidence            445555668899988889999999999999    999999999999999999985

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=85.71  E-value=1.2  Score=37.50  Aligned_cols=50  Identities=20%  Similarity=0.216  Sum_probs=38.3

Q ss_pred             hHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCC
Q 024046          184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP  237 (273)
Q Consensus       184 ~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~  237 (273)
                      .+..++..+.  .....|||..||+|..+.+..+.  +-+++++|+ |..++.+.
T Consensus       201 l~~~~i~~~~--~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~  251 (260)
T 1g60_A          201 LIERIIRASS--NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQAN  251 (260)
T ss_dssp             HHHHHHHHHC--CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred             HHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence            3455666543  45679999999999999998887  468999998 66666554

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=85.56  E-value=1.8  Score=35.15  Aligned_cols=53  Identities=11%  Similarity=0.149  Sum_probs=36.9

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC---------CCCceEEEcccC
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS---------YAGVEHVGGNMF  250 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---------~~ri~~~~gD~f  250 (273)
                      ..+.++||+||+|  ..++.+++ .|+-+.+-+|. |+-.+.|+.         .++|+++.||..
T Consensus        28 l~~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~   90 (202)
T 3cvo_A           28 YEEAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIG   90 (202)
T ss_dssp             HHHCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCS
T ss_pred             hhCCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCch
Confidence            3467899999985  44445554 56788899986 665555432         357999999953

>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*

Probab=85.19  E-value=1.3  Score=28.29  Aligned_cols=37  Identities=16%  Similarity=0.255  Sum_probs=29.8

Q ss_pred             hhHHHHhCCCCCHHHHHHHh-----CcCCCCCcchHHHHHHHHhcCCce
Q 024046           49 VFEIIAKAGELSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVL   92 (273)
Q Consensus        49 lfd~L~~~g~~t~~eLA~~~-----g~~~~~~~~~l~rlL~~L~~~gll   92 (273)
                      |...|...++.|++||++.+     ++    +..-+.|.|.   .+|++
T Consensus        10 i~~ll~~~~~~t~~el~~~l~~~~~~v----s~~Tv~R~L~---~lg~v   51 (64)
T 2p5k_A           10 IREIITSNEIETQDELVDMLKQDGYKV----TQATVSRDIK---ELHLV   51 (64)
T ss_dssp             HHHHHHHSCCCSHHHHHHHHHHTTCCC----CHHHHHHHHH---HHTCE
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHhCCCc----CHHHHHHHHH---HcCCE
Confidence            34456555799999999999     88    9999999988   55777

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=84.79  E-value=1.4  Score=39.75  Aligned_cols=41  Identities=17%  Similarity=0.235  Sum_probs=33.6

Q ss_pred             CCcceEEEecCCccHHHHHHH-HHCCC-CeEEEeec-hHHHHhC
Q 024046          196 QNVERLVDVGGGFGVTLSMIT-SKYPQ-IKAVNFDL-PHVVQDA  236 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~-~~~P~-l~~~~~Dl-p~v~~~a  236 (273)
                      ++...++|||++.|.++..++ +.+|. .+++.++- |...+..
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L  268 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTL  268 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHH
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHH
Confidence            567899999999999999988 67876 78999995 7655543

>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}

Probab=84.74  E-value=0.95  Score=33.21  Aligned_cols=64  Identities=13%  Similarity=0.212  Sum_probs=49.0

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhC------cCCCCCcchHHHHHHHHhcCCceecccc-CCC----cceecChhchHhh
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQ------AQNVKAPMMLDRMLRLLVSHRVLECSVS-GGE----RLYALNPVSKYFV  113 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g------~~~~~~~~~l~rlL~~L~~~gll~~~~~-~~~----~~y~lt~~s~~l~  113 (273)
                      +++-|+..|.. +|.+--+|++.+.      +    ++..+.+.|+-|...|+++.... ...    ..|++|+.++..+
T Consensus        10 l~~~IL~~L~~-~~~~Gyei~~~l~~~~~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l   84 (115)
T 4esb_A           10 LEGCILYIISQ-EEVYGYELSTKLNKHGFTFV----SEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGLEQL   84 (115)
T ss_dssp             HHHHHHHHHHH-SCEEHHHHHHHHHHTTCTTC----CHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHHHHcCCCCC----CcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHHHHH
Confidence            34456677776 7999999999985      6    89999999999999999986321 011    2599999987644

>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}

Probab=84.73  E-value=1  Score=42.80  Aligned_cols=61  Identities=10%  Similarity=0.085  Sum_probs=51.6

Q ss_pred             HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhc-----CCceeccccCCCcceecChhchHhhc
Q 024046           46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVS-----HRVLECSVSGGERLYALNPVSKYFVS  114 (273)
Q Consensus        46 elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~-----~gll~~~~~~~~~~y~lt~~s~~l~~  114 (273)
                      +.-|+..|...+.+|..+|++.+++    ++..+.+.|+.|..     .|+++..    ++.|.+++.......
T Consensus       432 ~~~iL~~l~~~~~it~~~la~~l~~----s~~~~~~~L~~L~~~~~~~~glie~~----g~~y~L~~~~~~~~~  497 (583)
T 3lmm_A          432 IAIVLYLLFQRPFITIDVVARGLQS----GKEAARNALEAARQTTVAGAPLIIAH----DGVWLLGNACREILR  497 (583)
T ss_dssp             HHHHHHHHHHSSSBCHHHHHHHHTS----CHHHHHHHHHHHHTCEETTEESEEEE----TTEEEECHHHHHHHT
T ss_pred             HHHHHHHHHHCCCcCHHHHHHHhCc----CHHHHHHHHHHHHhhhccccceEEEe----CCEEEECHHHHHHhc
Confidence            4457888888789999999999999    99999999999999     8999973    378999997655443

>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}

Probab=84.15  E-value=0.66  Score=35.22  Aligned_cols=33  Identities=9%  Similarity=0.084  Sum_probs=31.7

Q ss_pred             CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        58 ~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      ..|.++||+.+|+    ++..+.++|.-|...|++..
T Consensus        51 ~ps~~~LA~~~~~----s~~~v~~~L~~L~~KGlI~i   83 (135)
T 2v79_A           51 FPTPNQLQEGMSI----SVEECTNRLRMFIQKGFLFI   83 (135)
T ss_dssp             SCCHHHHHTTSSS----CHHHHHHHHHHHHHHTSCEE
T ss_pred             CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence            5799999999999    99999999999999999997

>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}

Probab=83.55  E-value=0.71  Score=35.36  Aligned_cols=64  Identities=16%  Similarity=0.154  Sum_probs=45.6

Q ss_pred             HHHHhChhHHHHhCCCCCHHHHHHHhCcC-CCCCcchHHHHHHHHhcCCceecccc-CCCcceecC
Q 024046           43 AAIQLGVFEIIAKAGELSAPEIAAQLQAQ-NVKAPMMLDRMLRLLVSHRVLECSVS-GGERLYALN  106 (273)
Q Consensus        43 ~a~elglfd~L~~~g~~t~~eLA~~~g~~-~~~~~~~l~rlL~~L~~~gll~~~~~-~~~~~y~lt  106 (273)
                      +..+.-|++.|...++.|++||.+.+.-. +.++..-+.|.|+.|+..|++.+... .+..+|.+.
T Consensus        18 T~qR~~Il~~l~~~~h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i~~~~~~~~Y~~~   83 (145)
T 3eyy_A           18 TPQRQLVLEAVDTLEHATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAHLGHGAPTYHLA   83 (145)
T ss_dssp             CHHHHHHHHHHHHHSSBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEECGGGCEEEEET
T ss_pred             CHHHHHHHHHHHhcCCCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEEEeCCCceEEEeC
Confidence            34566688888775689999999988321 12388899999999999999997532 112356643

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=83.21  E-value=1.8  Score=37.62  Aligned_cols=74  Identities=16%  Similarity=0.196  Sum_probs=53.2

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCC-CCeEEEeechHHHHhCCC---------CCCceEEEcccCCCCC-----CC----
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDLPHVVQDAPS---------YAGVEHVGGNMFESVP-----EG----  256 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dlp~v~~~a~~---------~~ri~~~~gD~f~~~p-----~~----  256 (273)
                      .+...||+||||-=...-.+.  .| +++++=+|.|.|++..+.         .++..+++.|+.+.+.     .+    
T Consensus       101 ~g~~QvV~LGaGlDTra~Rl~--~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~  178 (310)
T 2uyo_A          101 DGIRQFVILASGLDSRAYRLD--WPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPS  178 (310)
T ss_dssp             TTCCEEEEETCTTCCHHHHSC--CCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTT
T ss_pred             hCCCeEEEeCCCCCchhhhcc--CCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCC
Confidence            355789999999988866654  35 478899999999885432         3678999999986321     11    


Q ss_pred             --CEEEecccccccCCC
Q 024046          257 --DAILMKVGNFENYQS  271 (273)
Q Consensus       257 --D~~~l~~vLHd~~~~  271 (273)
                        =++++--+||+.+++
T Consensus       179 ~Pt~~i~Egvl~Yl~~~  195 (310)
T 2uyo_A          179 ARTAWLAEGLLMYLPAT  195 (310)
T ss_dssp             SCEEEEECSCGGGSCHH
T ss_pred             CCEEEEEechHhhCCHH
Confidence              366777788877654

>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}

Probab=83.16  E-value=0.7  Score=41.40  Aligned_cols=53  Identities=15%  Similarity=0.236  Sum_probs=45.2

Q ss_pred             HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecC
Q 024046           46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN  106 (273)
Q Consensus        46 elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt  106 (273)
                      +..|+++|.. +|.++++|+..+|+    +...+...|-.|.-.|++...   .++.|+++
T Consensus       330 ~~~vl~~l~~-~~~~~D~l~~~~gl----~~~~v~~~L~~LEl~G~v~~~---~Gg~~~~~  382 (382)
T 3maj_A          330 RTRILALLGP-SPVGIDDLIRLSGI----SPAVVRTILLELELAGRLERH---GGSLVSLS  382 (382)
T ss_dssp             HHHHHHHCCS-SCEEHHHHHHHHCC----CHHHHHHHHHHHHHTTCCEEC---TTSEEEC-
T ss_pred             HHHHHHhhCC-CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCcEEeC---CCceEecC
Confidence            4458888875 69999999999999    999999999999999999973   56777753

>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B

Probab=82.93  E-value=2.1  Score=35.16  Aligned_cols=39  Identities=18%  Similarity=0.153  Sum_probs=35.4

Q ss_pred             HhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccc
Q 024046           54 AKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV   96 (273)
Q Consensus        54 ~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~   96 (273)
                      ...|..|+.+||+.+|+    +..+....|+.+...|++-.+.
T Consensus       164 ~~~g~vt~~~la~~l~w----s~~~a~e~L~~~e~~G~l~~D~  202 (218)
T 3cuq_B          164 SEKGSLTSEEFAKLVGM----SVLLAKERLLLAEKMGHLCRDD  202 (218)
T ss_dssp             HHTSCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHCCCcCHHHHHHHhCC----CHHHHHHHHHHHHHcCCEEEEC
Confidence            33479999999999999    9999999999999999999874

>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28

Probab=82.83  E-value=1.2  Score=37.46  Aligned_cols=65  Identities=12%  Similarity=0.125  Sum_probs=50.4

Q ss_pred             HHhChhHHHHhC--CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCc---ceecChhchHhh
Q 024046           45 IQLGVFEIIAKA--GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV  113 (273)
Q Consensus        45 ~elglfd~L~~~--g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~---~y~lt~~s~~l~  113 (273)
                      -+..++..|.+.  ++.|..|||+.+++    ++..+.++++-|...|++.+.....+.   ...+|+.++.+.
T Consensus        35 ~q~~vL~~L~~~~~~~~~~~el~~~l~~----~~~t~t~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~~~  104 (250)
T 1p4x_A           35 KEFILLTYLFHQQENTLPFKKIVSDLCY----KQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKI  104 (250)
T ss_dssp             HHHHHHHHHHSCSCSEEEHHHHHHHSSS----CGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHHH
Confidence            345567777653  47899999999999    999999999999999999875322222   467888887654

>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}

Probab=82.74  E-value=0.74  Score=35.48  Aligned_cols=64  Identities=17%  Similarity=0.274  Sum_probs=45.2

Q ss_pred             HHHHhChhHHHHhC--CCCCHHHHHHHhCcC-CCCCcchHHHHHHHHhcCCceecccc-CCCcceecC
Q 024046           43 AAIQLGVFEIIAKA--GELSAPEIAAQLQAQ-NVKAPMMLDRMLRLLVSHRVLECSVS-GGERLYALN  106 (273)
Q Consensus        43 ~a~elglfd~L~~~--g~~t~~eLA~~~g~~-~~~~~~~l~rlL~~L~~~gll~~~~~-~~~~~y~lt  106 (273)
                      +..+.-|++.|...  ++.|++||.+.+.-. +.++..-+.|.|+.|+..|++.+... .+..+|.++
T Consensus        16 T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~   83 (150)
T 2w57_A           16 TLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHHFEGGKSVFELS   83 (150)
T ss_dssp             CHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEECGGGCEEEEEC
T ss_pred             CHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCceEEEec
Confidence            34566688888653  489999999998210 11288899999999999999997532 122356643

>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66

Probab=82.52  E-value=0.63  Score=33.44  Aligned_cols=44  Identities=27%  Similarity=0.319  Sum_probs=35.5

Q ss_pred             ChhHHHHhCCCC-CHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           48 GVFEIIAKAGEL-SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        48 glfd~L~~~g~~-t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      .|...|...+.. |..+||+.+|+    +...+++-|+.|...|+++..
T Consensus        32 ~I~~~l~~g~~lps~~eLa~~lgV----Sr~tVr~al~~L~~~GlI~~~   76 (102)
T 2b0l_A           32 HIFEELDGNEGLLVASKIADRVGI----TRSVIVNALRKLESAGVIESR   76 (102)
T ss_dssp             HHTTSSBTTEEEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHhhhcCCCcCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence            344444442245 99999999999    999999999999999999864

>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}

Probab=81.70  E-value=1.5  Score=37.96  Aligned_cols=39  Identities=13%  Similarity=0.210  Sum_probs=34.8

Q ss_pred             HHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCcee-c
Q 024046           52 IIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLE-C   94 (273)
Q Consensus        52 ~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~-~   94 (273)
                      .|...++.|.+|||+.+|+    ++.-++|.|..|...|+++ +
T Consensus        15 ~l~~~~~~~~~ela~~l~v----S~~tIrRdL~~l~~~G~v~ir   54 (315)
T 2w48_A           15 QLYYEQDMTQAQIARELGI----YRTTISRLLKRGREQGIVTIA   54 (315)
T ss_dssp             HHHHTSCCCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEE
Confidence            3444478999999999999    9999999999999999997 5

>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}

Probab=81.46  E-value=1.6  Score=38.98  Aligned_cols=64  Identities=17%  Similarity=0.168  Sum_probs=48.2

Q ss_pred             hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhhcCC
Q 024046           49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNK  116 (273)
Q Consensus        49 lfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~~~~  116 (273)
                      +++.|...+..|++++++.+|+    +..-..+.|+.|+..|++++..+++...|...+.-+.|..+.
T Consensus       302 ll~~l~~~p~~t~~~~~~~~~~----S~~TA~r~L~~L~e~GiL~~~~~gR~~~y~~~~~l~il~~~~  365 (373)
T 3eqx_A          302 LVQVIFEQPYCRIQNLVESGLA----KRQTASVYLKQLCDIGVLEEVQSGKEKLFVHPKFVTLMTKDS  365 (373)
T ss_dssp             HHHHHHHCSEEEHHHHHHTSSS----CHHHHHHHHHHHHHTTSCEEC--CCSCEEECHHHHHHHHSSC
T ss_pred             HHHHHHHCCCccHHHHHHHhCc----CHHHHHHHHHHHHHCCcEEEeCCCCceEeehHHHHHHHhccC
Confidence            6677776556899999999999    999999999999999999986433334576666655555443

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=81.01  E-value=1.9  Score=40.35  Aligned_cols=65  Identities=12%  Similarity=-0.063  Sum_probs=43.9

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHC-------------CCCeEEEeec-hHHHHhCCC------CCCceEE
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-------------PQIKAVNFDL-PHVVQDAPS------YAGVEHV  245 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-------------P~l~~~~~Dl-p~v~~~a~~------~~ri~~~  245 (273)
                      ..+++..+ .....+|+|-.||+|.++.+..+..             .+.+..++|+ |.+...|+-      .+.-.+.
T Consensus       207 ~lmv~l~~-p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~  285 (530)
T 3ufb_A          207 RFMVEVMD-PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRID  285 (530)
T ss_dssp             HHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEE
T ss_pred             HHHHHhhc-cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCcccccc
Confidence            33445444 4456799999999999998876542             2356899998 666665542      1344667


Q ss_pred             EcccCC
Q 024046          246 GGNMFE  251 (273)
Q Consensus       246 ~gD~f~  251 (273)
                      .+|.+.
T Consensus       286 ~~dtL~  291 (530)
T 3ufb_A          286 PENSLR  291 (530)
T ss_dssp             CSCTTC
T ss_pred             cccccc
Confidence            888875

>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}

Probab=80.99  E-value=1  Score=33.26  Aligned_cols=51  Identities=10%  Similarity=0.077  Sum_probs=39.8

Q ss_pred             ChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecC
Q 024046           48 GVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN  106 (273)
Q Consensus        48 glfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt  106 (273)
                      .|.+.+.. .|.++.|||+.+|+    ++..+..+|+.|...|.+...   ..+.|-++
T Consensus        11 ~i~~~~~~-~p~~~~~la~~~~~----~~~~~~~~l~~l~~~G~l~~i---~~~~~~~~   61 (121)
T 2pjp_A           11 KAEPLFGD-EPWWVRDLAKETGT----DEQAMRLTLRQAAQQGIITAI---VKDRYYRN   61 (121)
T ss_dssp             HHGGGCSS-SCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE---ETTEEEEH
T ss_pred             HHHHHHHh-CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe---cCCceECH
Confidence            34455543 47799999999999    999999999999999999874   44555443

>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=80.18  E-value=1  Score=32.00  Aligned_cols=47  Identities=17%  Similarity=0.313  Sum_probs=41.0

Q ss_pred             HHhChhHHHHhCC--CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           45 IQLGVFEIIAKAG--ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        45 ~elglfd~L~~~g--~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      -|.-|+..|.+.|  +++..||...+++    +..-+.++|..|...|++...
T Consensus        38 ~E~lVy~~I~~aGn~GIw~kdL~~~tnL----~~~~vtkiLK~LE~k~lIK~V   86 (95)
T 2yu3_A           38 QEKLVYQIIEDAGNKGIWSRDVRYKSNL----PLTEINKILKNLESKKLIKAV   86 (95)
T ss_dssp             HHHHHHHHHHHHTTSCEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHhCC----CHHHHHHHHHHHHhCCCEEEe
Confidence            4555777887766  6999999999999    999999999999999999874

>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}

Probab=80.12  E-value=0.13  Score=45.60  Aligned_cols=61  Identities=13%  Similarity=0.080  Sum_probs=48.7

Q ss_pred             HHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChh
Q 024046           43 AAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV  108 (273)
Q Consensus        43 ~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~  108 (273)
                      +..+..++-+|-..|+.|+.|||+.+|+    +...+.+.|+-|...|++.... +.+..|+..+.
T Consensus        17 s~~ea~vY~~Ll~~g~~t~~eia~~~gv----~~~~Vy~~L~~L~~~GlV~~~~-g~p~~y~av~p   77 (342)
T 3qph_A           17 TKYEILTYWTLLVYGPSTAKEISTKSGI----PYNRVYDTISSLKLRGFVTEIE-GTPKVYAAYSP   77 (342)
T ss_dssp             HHHTTSCSHHHHHHHHHHHSCCSSSTTS----SSCSCCHHHHHHHHHTSEEEEC-CTTCEEEECCH
T ss_pred             CHHHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEc-CceeEEEEcCH
Confidence            3456667777777689999999999999    9999999999999999998753 24456665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	273
d1fp1d2	244	c.66.1.12 (D:129-372) Chalcone O-methyltransferase	7e-45
d1fp2a2	244	c.66.1.12 (A:109-352) Isoflavone O-methyltransfera	3e-42
d1kyza2	243	c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli	4e-42
d1fp1d1	110	a.4.5.29 (D:19-128) Chalcone O-methyltransferase {	1e-34
d1kyza1	107	a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic	2e-34
d1qzza2	256	c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase	7e-22
d1tw3a2	253	c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf	4e-21
d1fp2a1	101	a.4.5.29 (A:8-108) Isoflavone O-methyltransferase	1e-20
d1tw3a1	85	a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransfer	3e-15
d1qzza1	92	a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase R	4e-13

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  149 bits (378), Expect = 7e-45
 Identities = 60/144 (41%), Positives = 93/144 (64%), Gaps = 1/144 (0%)

Query: 120 SLGHFMALPLDKVFMESWLGLKDAVMEGGI-PFNRVHGMHIFEYASGNPRFNETYHEAMF 178
            L  F         ++ W+  K+AV++  I  F  VHG+  +E+   + + N+ ++++M 
Sbjct: 3   YLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMV 62

Query: 179 NHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS 238
           +     M+R+LE Y GF+ +  LVDVGGG G  L +I SKYP IK +NFDLP V+++AP 
Sbjct: 63  DVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPP 122

Query: 239 YAGVEHVGGNMFESVPEGDAILMK 262
            +G+EHVGG+MF SVP+GDA+++K
Sbjct: 123 LSGIEHVGGDMFASVPQGDAMILK 146

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  142 bits (360), Expect = 3e-42
 Identities = 44/144 (30%), Positives = 75/144 (52%), Gaps = 1/144 (0%)

Query: 120 SLGHFMALPLDKVFMESWLGLKDAVMEGGI-PFNRVHGMHIFEYASGNPRFNETYHEAMF 178
            L   +   LD     S+  LK  + E  +  F    G   +++   NP +N ++++AM 
Sbjct: 2   CLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMA 61

Query: 179 NHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS 238
           + S +    + +    F  +E +VDVGGG G T  +I   +P++K + FD P VV++   
Sbjct: 62  SDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSG 121

Query: 239 YAGVEHVGGNMFESVPEGDAILMK 262
              + +VGG+MF S+P  DA+L+K
Sbjct: 122 SNNLTYVGGDMFTSIPNADAVLLK 145

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  142 bits (359), Expect = 4e-42
 Identities = 84/146 (57%), Positives = 110/146 (75%)

Query: 117 DGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEA 176
           DG S+     +  DKV MESW  LKDAV++GGIPFN+ +GM  FEY   +PRFN+ +++ 
Sbjct: 1   DGVSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKG 60

Query: 177 MFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDA 236
           M +HSTI M++ILE Y GF+ ++ LVDVGGG G  ++ I SKYP IK +NFDLPHV++DA
Sbjct: 61  MSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDA 120

Query: 237 PSYAGVEHVGGNMFESVPEGDAILMK 262
           PSY GVEHVGG+MF S+P+ DA+ MK
Sbjct: 121 PSYPGVEHVGGDMFVSIPKADAVFMK 146

>d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 110

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  118 bits (298), Expect = 1e-34
 Identities = 45/110 (40%), Positives = 60/110 (54%), Gaps = 11/110 (10%)

Query: 19  EEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE----LSAPEIAAQLQA--QN 72
           + E+ +   AM L   +V P    AAI L +FEIIAKA      +S  EIA++L A  Q+
Sbjct: 1   QTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQH 60

Query: 73  VKAPMMLDRMLRLLVSHRVLECSV-----SGGERLYALNPVSKYFVSNKD 117
              P  LDRMLRLL S+ VL  +       G ER+Y L+ V KY V ++ 
Sbjct: 61  SDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDES 110

>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 107

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  118 bits (297), Expect = 2e-34
 Identities = 51/105 (48%), Positives = 66/105 (62%), Gaps = 8/105 (7%)

Query: 20  EEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE---LSAPEIAAQLQAQNVKAP 76
            +EE+   AMQLA   VLPM  ++A++L + EIIAKAG    +S  EIA+QL   N  AP
Sbjct: 3   SDEEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAP 62

Query: 77  MMLDRMLRLLVSHRVLECSV-----SGGERLYALNPVSKYFVSNK 116
           +MLDRMLRLL  + +L CSV        +RLY L  V+KY V N+
Sbjct: 63  VMLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNE 107

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

 Score = 89.7 bits (221), Expect = 7e-22
 Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 1/118 (0%)

Query: 133 FMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHY 192
              ++ GL D V  G   +   +G   +E  S +    +++   M     +A E   + Y
Sbjct: 18  ADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAY 77

Query: 193 EGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMF 250
           + +  V  ++DVGGG G  L+ I  + P ++    +L    + A        +   + 
Sbjct: 78  D-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVT 134

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

 Score = 87.4 bits (215), Expect = 4e-21
 Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 1/115 (0%)

Query: 136 SWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGF 195
           S+  L DA+  G   +  ++G   +E  +G P    ++   +     +A +     Y+ +
Sbjct: 20  SFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-W 78

Query: 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMF 250
            NV  ++DVGGG G   + I  + P + A   ++   V  A SY   E +   + 
Sbjct: 79  TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVD 133

>d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 101

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 81.9 bits (202), Expect = 1e-20
 Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 3/102 (2%)

Query: 17  EEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE-LSAPEIAAQLQAQNVKA 75
           +  E  ++ +   +     +  M+ + A+++ +  II   G+ +S   + + LQ  + K 
Sbjct: 2   KPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKI 61

Query: 76  PMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKD 117
             +  R++R L  +   E      E  YAL   S+  V   D
Sbjct: 62  GNV-RRLMRYLAHNGFFEIITK-EEESYALTVASELLVRGSD 101

>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 85

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

 Score = 67.1 bits (164), Expect = 3e-15
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 8/89 (8%)

Query: 27  HAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLL 86
             +     +  PM  + A  L + + I   G  +   +AA+   +    P  L R++R L
Sbjct: 4   RTLIRLGSLHTPMVVRTAATLRLVDHILA-GARTVKALAARTDTR----PEALLRLIRHL 58

Query: 87  VSHRVLECSVSGGERLYALNPVSKYFVSN 115
           V+  +LE         +    V +    +
Sbjct: 59  VAIGLLEED---APGEFVPTEVGELLADD 84

>d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 92

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

 Score = 61.7 bits (150), Expect = 4e-13
 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 6/95 (6%)

Query: 19  EEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMM 78
           E  ++     ++    +V PMA + A  L + + +  AG  +   +A +        P  
Sbjct: 2   EPTDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLL-AGADTLAGLADRTDTH----PQA 56

Query: 79  LDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113
           L R++R L    VLE     G        +     
Sbjct: 57  LSRLVRHLTVVGVLEGGEKQGRP-LRPTRLGMLLA 90

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	273
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	100.0
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	100.0
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.97
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.96
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.94
d1fp2a1	101	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.78
d1tw3a1	85	Carminomycin 4-O-methyltransferase {Streptomyces p	99.67
d1qzza1	92	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.64
d1kyza1	107	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	99.55
d1fp1d1	110	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.5
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.19
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.11
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.08
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.05
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	98.99
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	98.9
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	98.89
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	98.87
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	98.82
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.81
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.79
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	98.78
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	98.77
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	98.71
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	98.68
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	98.68
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	98.63
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.59
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	98.54
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	98.53
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	98.53
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.5
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.47
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	98.45
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.43
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	98.39
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.39
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	98.32
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	98.3
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	98.29
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.27
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	98.26
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	98.21
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	98.19
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	98.18
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.18
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.17
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.15
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	98.13
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	98.13
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.1
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	98.05
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	98.01
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	98.0
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	97.99
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	97.97
d1mkma1	75	Transcriptional regulator IclR, N-terminal domain	97.94
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	97.9
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	97.89
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	97.88
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	97.84
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	97.83
d2h00a1	250	Methyltransferase 10 domain containing protein MET	97.83
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	97.78
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	97.72
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	97.68
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	97.6
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	97.51
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	97.36
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	97.35
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	97.34
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	97.33
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	97.27
d1ub9a_	100	Hypothetical protein PH1061 {Archaeon Pyrococcus h	97.27
d1r1ta_	98	SmtB repressor {Cyanobacteria (Synechococcus), pcc	97.26
d1u2wa1	108	Cadmium efflux system accessory protein CadC {Stap	97.24
d1r1ua_	94	Metal-sensing transcriptional repressor CzrA {Stap	97.22
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	97.21
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	97.18
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	97.14
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	97.1
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	96.94
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	96.9
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	96.9
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	96.86
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	96.85
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	96.78
d1z05a1	71	Transcriptional regulator VC2007 N-terminal domain	96.7
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	96.66
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	96.65
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	96.45
d2p4wa1	194	Transcriptional regulatory protein PF1790 {Pyrococ	96.44
d1ulya_	190	Hypothetical protein PH1932 {Pyrococcus horikoshii	96.44
d1biaa1	63	Biotin repressor, N-terminal domain {Escherichia c	96.37
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	96.37
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	96.36
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	96.36
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	96.33
d1sfxa_	109	Hypothetical protein AF2008 {Archaeoglobus fulgidu	96.26
d1s3ja_	143	Putative transcriptional regulator YusO {Bacillus	96.23
d1z6ra1	70	Mlc protein N-terminal domain {Escherichia coli [T	96.21
d2a61a1	139	Transcriptional regulator TM0710 {Thermotoga marit	96.17
d3ctaa1	85	Ta1064 (RFK), N-terminal domain {Thermoplasma acid	96.17
d2hoea1	62	N-acetylglucosamine kinase {Thermotoga maritima [T	96.13
d1xd7a_	127	Hypothetical protein ywnA {Bacillus subtilis [TaxI	96.1
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	96.1
d1lvaa3	64	C-terminal fragment of elongation factor SelB {Moo	96.06
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	95.89
d1lnwa_	141	MexR repressor {Pseudomonas aeruginosa [TaxId: 287	95.88
d2bv6a1	136	Transcriptional regulator MgrA {Staphylococcus aur	95.85
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	95.82
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	95.8
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	95.77
d2etha1	140	Putative transcriptional regulator TM0816 {Thermot	95.77
d1j5ya1	65	Putative transcriptional regulator TM1602, N-termi	95.74
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	95.48
d1i1ga1	60	LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.35
d1r7ja_	90	Sso10a (SSO10449) {Archaeon Sulfolobus solfataricu	95.33
d2cfxa1	63	Transcriptional regulator LrpC {Bacillus subtilis	95.31
d1jgsa_	138	Multiple antibiotic resistance repressor, MarR {Es	95.18
d2cyya1	60	Putative transcriptional regulator PH1519 {Archaeo	95.1
d2cg4a1	63	Regulatory protein AsnC {Escherichia coli [TaxId:	95.07
d2hr3a1	145	Probable transcriptional regulator PA3067 {Pseudom	95.01
d2hzta1	95	Putative transcriptional regulator YtcD {Bacillus	94.98
d1ylfa1	138	Hypothetical protein BC1842 {Bacillus cereus [TaxI	94.63
d3broa1	135	Transcriptional regulator OEOE1854 {Oenococcus oen	94.58
d2f2ea1	142	Hypothetical protein PA1607 {Pseudomonas aeruginos	94.55
d1lj9a_	144	Transcriptional regulator SlyA {Enterococcus faeca	94.53
d2fbia1	136	Probable transcriptional regulator PA4135 {Pseudom	94.36
d2d1ha1	109	Hypothetical transcriptional regulator ST1889 {Sul	94.36
d1z91a1	137	Organic hydroperoxide resistance transcriptional r	94.32
d2ev0a1	61	Manganese transport regulator MntR {Bacillus subti	94.1
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	93.99
d1z7ua1	108	Hypothetical protein EF0647 {Enterococcus faecalis	93.99
d2isya1	63	Iron-dependent regulator IdeR {Mycobacterium tuber	93.94
d1xmka1	73	Z-alpha domain of dsRNA-specific adenosine deamina	93.93
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	93.9
d1yyva1	114	Putative transcriptional regulator YtfH {Salmonell	93.85
d2fbha1	137	Transcriptional regulator PA3341 {Pseudomonas aeru	93.66
d3deua1	140	Transcriptional regulator SlyA {Salmonella typhimu	93.65
d2fswa1	102	Hypothetical protein PG0823 {Porphyromonas gingiva	93.63
d1j75a_	57	Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]}	93.39
d2fxaa1	162	Protease production regulatory protein Hpr {Bacill	93.32
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	93.1
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	93.05
d1ku9a_	151	DNA-binding protein Mj223 {Archaeon Methanococcus	92.79
d2gxba1	59	Z-alpha domain of dsRNA-specific adenosine deamina	92.78
d1p4xa2	125	Staphylococcal accessory regulator A homolog, SarS	92.73
d1hsja1	115	Staphylococcal accessory regulator A homolog, SarR	92.54
d1jhfa1	71	LexA repressor, N-terminal DNA-binding domain {Esc	92.36
d2frha1	115	Pleiotropic regulator of virulence genes, SarA {St	91.75
d1p4xa1	125	Staphylococcal accessory regulator A homolog, SarS	91.53
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	91.21
d2fbka1	172	Transcriptional regulator DR1159 {Deinococcus radi	90.91
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	90.5
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	90.25
d1dpua_	69	C-terminal domain of RPA32 {Human (Homo sapiens) [	89.76
d2obpa1	81	Putative DNA-binding protein ReutB4095 {Ralstonia	89.75
d1q1ha_	88	Transcription factor E/IIe-alpha, N-terminal domai	89.58
d1sfua_	70	34L {Yaba-like disease virus, YLDV [TaxId: 132475]	88.68
d1zyba1	73	Probable transcription regulator BT4300, C-termina	88.49
d2p8ta1	69	Hypothetical protein PH0730 {Pyrococcus horikoshii	88.16
d1y0ua_	89	Putative arsenical resistance operon repressor AF0	87.69
d1bl0a1	54	MarA {Escherichia coli [TaxId: 562]}	86.9
d2zcwa1	82	Transcriptional regulator TTHA1359, C-terminal dom	85.55
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	84.89
d2gaua1	81	Transcriptional regulator PG0396, C-terminal domai	84.89
d1ft9a1	80	CO-sensing protein CooA, C-terminal domain {Rhodos	84.88
d1okra_	120	Methicillin resistance regulatory protein MecI {St	84.62
d1s6la1	60	Alkylmercury lyase MerB {Escherichia coli [TaxId:	84.45
d1i5za1	69	Catabolite gene activator protein (CAP), C-termina	83.59
d3e5ua1	80	Chlorophenol reduction protein CprK {Desulfitobact	82.68
d2g9wa1	122	Hypothetical protein Rv1846c {Mycobacterium tuberc	82.57
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	82.28
d1stza1	87	Heat-inducible transcription repressor HrcA, N-ter	81.91
d2hs5a1	69	Putative transcriptional regulator RHA1_ro03477 {R	81.38
d3bwga1	78	Transcriptional regulator YydK {Bacillus subtilis	81.0

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=2.5e-34  Score=245.53  Aligned_cols=154  Identities=38%  Similarity=0.764  Sum_probs=132.9

Q ss_pred             CccchhhcccCChhHHHHhhhHHHHHhcCC-CcchhccCCchhhhhhcCcchHHHHHHHHHhcchhhHHHHHhhcccCCC
Q 024046          119 ASLGHFMALPLDKVFMESWLGLKDAVMEGG-IPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQN  197 (273)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~am~~~~~~~~~~il~~~~~~~~  197 (273)
                      .|+++++.++++|.+++.|.+|++++++++ ++|+.++|.++|+|+.+||+..+.|+.+|.+.+...++.+++.++.|++
T Consensus         2 g~l~~~~~~~~~p~~~~~w~~l~~~v~~g~~~~f~~~~G~~~~e~l~~~p~~~~~F~~aM~~~s~~~~~~l~~~~~~f~~   81 (244)
T d1fp1d2           2 GYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEG   81 (244)
T ss_dssp             CCCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTT
T ss_pred             ccHHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHhHHhcCCCHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence            378888988889999999999999999876 5699999999999999999999999999999998888999999987889


Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCCCCceEEEcccCCCCCCCCEEEecccccccCCCC
Q 024046          198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKVGNFENYQSH  272 (273)
Q Consensus       198 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~~ri~~~~gD~f~~~p~~D~~~l~~vLHd~~~~~  272 (273)
                      ..+|||||||+|.++++++++||+++++++|+|+|++.+...+||++++||||+++|.+|+|++++|||||+||+
T Consensus        82 ~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~ri~~~~gd~~~~~p~~D~~~l~~vLh~~~de~  156 (244)
T d1fp1d2          82 ISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEK  156 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHH
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhccCCCCCeEEecCCcccccccceEEEEehhhhhCCHHH
Confidence            999999999999999999999999999999999999998888999999999999999889999999999999874

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=1.1e-33  Score=241.68  Aligned_cols=154  Identities=54%  Similarity=0.967  Sum_probs=144.5

Q ss_pred             CccchhhcccCChhHHHHhhhHHHHHhcCCCcchhccCCchhhhhhcCcchHHHHHHHHHhcchhhHHHHHhhcccCCCc
Q 024046          119 ASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNV  198 (273)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~am~~~~~~~~~~il~~~~~~~~~  198 (273)
                      .|+++++.+.+++.+++.|.+|++++|+|+++|+.++|.++|+|+.++|+..+.|+.+|...+...++.+++.++.+++.
T Consensus         3 ~s~~~~~~~~~~~~~~~~W~~L~~avrtG~~~f~~~~G~~~~~~~~~~p~~~~~F~~aM~~~~~~~~~~~~~~~~~~~~~   82 (243)
T d1kyza2           3 VSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEGL   82 (243)
T ss_dssp             CCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSC
T ss_pred             CcHHHHHHHhcCHHHHHHHHHHHHHHhhCCCHHHhhcCCCHHHHHHhCHHHHHHHHHHHhHhhhhHHHHHHHhcccccCC
Confidence            47888888888898999999999999999999999999999999999999999999999998888888899998845678


Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCCCCceEEEcccCCCCCCCCEEEecccccccCCCC
Q 024046          199 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKVGNFENYQSH  272 (273)
Q Consensus       199 ~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~~ri~~~~gD~f~~~p~~D~~~l~~vLHd~~~~~  272 (273)
                      ++|||||||+|.++++++++||+++++++|+|.|++.+...+|++++++|||+++|.+|+|++++|||+|+|++
T Consensus        83 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~~~P~ad~~~l~~vlh~~~d~~  156 (243)
T d1kyza2          83 KSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEH  156 (243)
T ss_dssp             SEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCCCCTTEEEEECCTTTCCCCCSCEECSSSSTTSCHHH
T ss_pred             cEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcccCCceEEecccccccCCCcceEEEEEEeecCCHHH
Confidence            99999999999999999999999999999999999999988999999999999999999999999999999863

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.97  E-value=1.1e-32  Score=235.39  Aligned_cols=153  Identities=29%  Similarity=0.496  Sum_probs=137.4

Q ss_pred             ccchhhcccCChhHHHHhhhHHHHHhcCC-CcchhccCCchhhhhhcCcchHHHHHHHHHhcchhhHHHHHhhcccCCCc
Q 024046          120 SLGHFMALPLDKVFMESWLGLKDAVMEGG-IPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNV  198 (273)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~L~e~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~am~~~~~~~~~~il~~~~~~~~~  198 (273)
                      ++..++.+..+|.++..|..|+++++++. ++|+.++|.++|+|+.+||+..+.|+.+|...+......+.+....|++.
T Consensus         2 s~ap~~~~~~~p~~~~~w~~l~~~~~~~~~~~f~~a~G~~~~e~l~~~pe~~~~F~~aM~~~s~~~~~~~~~~~~~~~~~   81 (244)
T d1fp2a2           2 CLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFVFDGL   81 (244)
T ss_dssp             CCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHTCHHHHTTC
T ss_pred             ChHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHhhhhhhhhhhhHhhhcccccCc
Confidence            45666777778999999999999999874 68999999999999999999999999999998887666665532237888


Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCCCCCceEEEcccCCCCCCCCEEEecccccccCCCC
Q 024046          199 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKVGNFENYQSH  272 (273)
Q Consensus       199 ~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~~ri~~~~gD~f~~~p~~D~~~l~~vLHd~~~~~  272 (273)
                      .+|||||||+|.++..++++||+++++++|+|+|++.+...+||++++||||+++|.+|+|++++|||||+|++
T Consensus        82 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~rv~~~~gD~f~~~p~aD~~~l~~vLHdw~d~~  155 (244)
T d1fp2a2          82 ESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKD  155 (244)
T ss_dssp             SEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHH
T ss_pred             eEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCcccCceEEEecCcccCCCCCcEEEEEeecccCChHH
Confidence            99999999999999999999999999999999999999888999999999999999889999999999999874

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.96  E-value=2.3e-29  Score=216.27  Aligned_cols=153  Identities=21%  Similarity=0.331  Sum_probs=137.0

Q ss_pred             CccchhhcccCChhHH-HHhhhHHHHHhcCCCcchhccCCchhhhhhcCcchHHHHHHHHHhcchhhHHHHHhhcccCCC
Q 024046          119 ASLGHFMALPLDKVFM-ESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQN  197 (273)
Q Consensus       119 ~~~~~~~~~~~~~~~~-~~~~~L~e~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~am~~~~~~~~~~il~~~~~~~~  197 (273)
                      .++++|+.+....... .+|.+|.+++|+|+++|+..+|.++|+|+..+|+..+.|+++|...+...++.+++.++ |++
T Consensus         3 ~~~~~~~~l~~~~~~~~~~~~~L~~~~rtG~~~~~~~~G~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~d-~~~   81 (256)
T d1qzza2           3 AQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-WSA   81 (256)
T ss_dssp             TCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC-CTT
T ss_pred             HHHHHHHhhcCchhhhHhhHHHHHHHHHhCCchhhhhhCCCHHHHHHhCHHHHHHHHHHHHhhHHHHHHHHHhcCC-Ccc
Confidence            4677787765333333 37999999999999999999999999999999999999999999998888899999998 999


Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCC-------CCCceEEEcccCCCCCCC-CEEEecccccccC
Q 024046          198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVGGNMFESVPEG-DAILMKVGNFENY  269 (273)
Q Consensus       198 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~-------~~ri~~~~gD~f~~~p~~-D~~~l~~vLHd~~  269 (273)
                      .++|||||||+|.++..++++||+++++++|+|++++.++.       .+||+++.+|+|.++|.+ |+|++++|||+|+
T Consensus        82 ~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~~vLh~~~  161 (256)
T d1qzza2          82 VRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWS  161 (256)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGGGSC
T ss_pred             CCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhccccccccC
Confidence            99999999999999999999999999999999999887754       289999999999999976 9999999999999


Q ss_pred             CCC
Q 024046          270 QSH  272 (273)
Q Consensus       270 ~~~  272 (273)
                      |++
T Consensus       162 d~~  164 (256)
T d1qzza2         162 DED  164 (256)
T ss_dssp             HHH
T ss_pred             cHH
Confidence            863

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.94  E-value=1.7e-27  Score=203.95  Aligned_cols=137  Identities=25%  Similarity=0.448  Sum_probs=127.5

Q ss_pred             HHhhhHHHHHhcCCCcchhccCCchhhhhhcCcchHHHHHHHHHhcchhhHHHHHhhcccCCCcceEEEecCCccHHHHH
Q 024046          135 ESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSM  214 (273)
Q Consensus       135 ~~~~~L~e~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~am~~~~~~~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~  214 (273)
                      .+|.+|++++|+|+++|+.++|.++|+|+..+|+..+.|+.+|+..+....+.+++.++ |++.++|||||||+|.++..
T Consensus        19 ~~~~~L~~~vr~G~~~~~~~~G~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~d-~~~~~~VLDvGcG~G~~~~~   97 (253)
T d1tw3a2          19 ISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAA   97 (253)
T ss_dssp             GGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC-CTTCSEEEEETCTTSHHHHH
T ss_pred             ccHHHHHHHHHhCCchhhhccCCCHHHHHhhCHHHHHHHHHHHHHhHHHHHHHHHhhcC-CccCCEEEEeCCCCCHHHHH
Confidence            47999999999999999999999999999999999999999999988888889999999 99999999999999999999


Q ss_pred             HHHHCCCCeEEEeechHHHHhCCC-------CCCceEEEcccCCCCCCC-CEEEecccccccCCCC
Q 024046          215 ITSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVGGNMFESVPEG-DAILMKVGNFENYQSH  272 (273)
Q Consensus       215 l~~~~P~l~~~~~Dlp~v~~~a~~-------~~ri~~~~gD~f~~~p~~-D~~~l~~vLHd~~~~~  272 (273)
                      +++++|+++++++|+|++++.++.       .+||+++.+|+|+++|.+ |+|+++++||+|+|++
T Consensus        98 la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~~~vlh~~~d~~  163 (253)
T d1tw3a2          98 IARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHD  163 (253)
T ss_dssp             HHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSCHHH
T ss_pred             HHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhhcccchhheeeccccccCCchh
Confidence            999999999999999998887764       279999999999988865 9999999999999863

>d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.78  E-value=2e-19  Score=131.39  Aligned_cols=97  Identities=19%  Similarity=0.214  Sum_probs=83.6

Q ss_pred             hhhhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccc
Q 024046           18 EEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV   96 (273)
Q Consensus        18 ~~~~~~~~~~l~~~~~g~~~~~aL~~a~elglfd~L~~~-g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~   96 (273)
                      .+|..+++..+|++++||+.+++|++|+++||||.|.+. ||+|++|||+.+++ ++.+++.+.|+||+|++.|+|.+..
T Consensus         3 ~~e~~qaq~~l~~~~~gf~~s~aL~~aveLgi~d~l~~~~~p~t~~eLa~~~~~-~~~~~~~L~RlLR~L~~~gi~~~~~   81 (101)
T d1fp2a1           3 PSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQV-PSSKIGNVRRLMRYLAHNGFFEIIT   81 (101)
T ss_dssp             STHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTC-CGGGHHHHHHHHHHHHHTTSEEEEE
T ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHHHHcCCCCCHHHHHHHcCC-CCccchHHHHHHHHHHhCCceeeec
Confidence            467788999999999999999999999999999999864 49999999999998 3334567999999999999997642


Q ss_pred             cCCCcceecChhchHhhcCC
Q 024046           97 SGGERLYALNPVSKYFVSNK  116 (273)
Q Consensus        97 ~~~~~~y~lt~~s~~l~~~~  116 (273)
                       ..+++|.+||.|+.|+.+.
T Consensus        82 -~~~~~Y~lt~~s~~Lv~~~  100 (101)
T d1fp2a1          82 -KEEESYALTVASELLVRGS  100 (101)
T ss_dssp             -SSSEEEEECHHHHTTSTTS
T ss_pred             -CCCCeEecCHHHHHhhcCC
Confidence             2557999999999887653

>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.67  E-value=7.2e-17  Score=114.25  Aligned_cols=79  Identities=22%  Similarity=0.295  Sum_probs=72.7

Q ss_pred             HHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChh
Q 024046           29 MQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV  108 (273)
Q Consensus        29 ~~~~~g~~~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~  108 (273)
                      +..+.+++.+++|++|+++||||+|.. ||+|++|||+.+|+    +++.+.|+||+|++.|+|+++   +++.|.+|+.
T Consensus         6 l~~l~~~~~~~aL~~av~L~ifd~l~~-gp~s~~eLA~~~g~----~~~~l~rlLr~l~a~gl~~e~---~~~~y~lt~~   77 (85)
T d1tw3a1           6 LIRLGSLHTPMVVRTAATLRLVDHILA-GARTVKALAARTDT----RPEALLRLIRHLVAIGLLEED---APGEFVPTEV   77 (85)
T ss_dssp             HHHHHCSHHHHHHHHHHHTTHHHHHHT-TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---ETTEEEECTT
T ss_pred             HHHHHchHHHHHHHHHHHcCcHHHhcc-CCCCHHHHHHHhCc----ChhHHHHHHHHHHHCCCeEec---CCCeEecCHH
Confidence            444689999999999999999999986 89999999999999    999999999999999999984   6789999999


Q ss_pred             chHhhcC
Q 024046          109 SKYFVSN  115 (273)
Q Consensus       109 s~~l~~~  115 (273)
                      |+.|.++
T Consensus        78 s~~L~~D   84 (85)
T d1tw3a1          78 GELLADD   84 (85)
T ss_dssp             GGGGSTT
T ss_pred             HHHhhcC
Confidence            9988765

>d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.64  E-value=1.8e-16  Score=113.55  Aligned_cols=87  Identities=20%  Similarity=0.243  Sum_probs=77.6

Q ss_pred             hhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC
Q 024046           21 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE  100 (273)
Q Consensus        21 ~~~~~~~l~~~~~g~~~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~  100 (273)
                      -.+.+..+++++.+++.+++|++|+++||||+|.+ ||+|++|||+.+|+    +++.+.|+||+|++.|+|++.. .+.
T Consensus         4 ~d~~~d~ll~~~~~~~~~~~L~~aveL~ifd~L~~-gp~t~~eLA~~~g~----~~~~l~rLlr~L~a~gll~~~~-d~~   77 (92)
T d1qzza1           4 TDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA-GADTLAGLADRTDT----HPQALSRLVRHLTVVGVLEGGE-KQG   77 (92)
T ss_dssp             CHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT-TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEECCC-C-C
T ss_pred             cchhHHHHHHHHHchHHHHHHHHHHHcCchHHHhC-CCCCHHHHHHHHCc----CchHHHHHHHHHHHCCCeeeec-CCC
Confidence            35788999999999999999999999999999987 89999999999999    9999999999999999999842 123


Q ss_pred             cceecChhchHhh
Q 024046          101 RLYALNPVSKYFV  113 (273)
Q Consensus       101 ~~y~lt~~s~~l~  113 (273)
                      +.|++|+.+..|.
T Consensus        78 ~~~~~t~~g~lL~   90 (92)
T d1qzza1          78 RPLRPTRLGMLLA   90 (92)
T ss_dssp             CCCEECTTGGGGS
T ss_pred             ceecccHHHHhcc
Confidence            4788899988775

>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.55  E-value=7.8e-15  Score=107.12  Aligned_cols=92  Identities=53%  Similarity=0.773  Sum_probs=76.7

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCC---CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecccc-CC
Q 024046           24 SYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAG---ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS-GG   99 (273)
Q Consensus        24 ~~~~l~~~~~g~~~~~aL~~a~elglfd~L~~~g---~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~-~~   99 (273)
                      +....++++++++.+++|++|++|||||+|...|   +.|+.|||..++.+|+..+..+.|+||+|++.|+|.+... ..
T Consensus         7 ~~l~a~~L~~~~v~pmaLk~AieLgI~DiI~~~G~~~~ls~~eia~~l~~~~p~~~~~L~RilR~Las~~vf~~~~~~~~   86 (107)
T d1kyza1           7 ANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSVRTQQ   86 (107)
T ss_dssp             HHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHTTCTTCCBCHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTSEEEEEEECT
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHcCCHHHHHHcCCCCCCCHHHHHHhcCCCCCcchHHHHHHHHHHHhcCceEEeeecCC
Confidence            4446678899999999999999999999999865   6799999999998655556789999999999999975321 11


Q ss_pred             C----cceecChhchHhhcC
Q 024046          100 E----RLYALNPVSKYFVSN  115 (273)
Q Consensus       100 ~----~~y~lt~~s~~l~~~  115 (273)
                      +    ..|.+||.++.|+++
T Consensus        87 dg~~~~~Y~LTpvsk~Lv~d  106 (107)
T d1kyza1          87 DGKVQRLYGLATVAKYLVKN  106 (107)
T ss_dssp             TSCEEEEEEECHHHHHHSCC
T ss_pred             CCCeeeEEecchhHHhhcCC
Confidence            1    369999999999876

>d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.50  E-value=4.3e-14  Score=103.44  Aligned_cols=97  Identities=43%  Similarity=0.607  Sum_probs=77.9

Q ss_pred             hhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCC-C---CCHHHHHHHhCcC--CCCCcchHHHHHHHHhcCCcee
Q 024046           20 EEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAG-E---LSAPEIAAQLQAQ--NVKAPMMLDRMLRLLVSHRVLE   93 (273)
Q Consensus        20 ~~~~~~~~l~~~~~g~~~~~aL~~a~elglfd~L~~~g-~---~t~~eLA~~~g~~--~~~~~~~l~rlL~~L~~~gll~   93 (273)
                      +.+++....++++++++.+++|++|++|||||+|...| |   +|++|||..+...  |+-.+..|.|+||+|++.|+|.
T Consensus         2 ~~~~~~l~a~~L~~~~v~pMaLk~AieLgI~diI~~~G~~~~~ls~~ela~~lp~~~~~p~~~~~L~RiLRlLas~~vf~   81 (110)
T d1fp1d1           2 TEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLT   81 (110)
T ss_dssp             CHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEE
T ss_pred             chHHHHHHHHHHHHhhHHHHHHHHHHHcCCHHHHHHcCCCCCCCCHHHHHHhCCCCCCCccHHHHHHHHHHHHHHcCccc
Confidence            34567888999999999999999999999999999865 3   7999999998751  2212446999999999999997


Q ss_pred             cccc-CCC----cceecChhchHhhcCC
Q 024046           94 CSVS-GGE----RLYALNPVSKYFVSNK  116 (273)
Q Consensus        94 ~~~~-~~~----~~y~lt~~s~~l~~~~  116 (273)
                      +... ..+    ..|.+||.++.|+++.
T Consensus        82 ~~~~~~~~g~~e~~Y~Ltpvsk~Lv~de  109 (110)
T d1fp1d1          82 STTRTIEDGGAERVYGLSMVGKYLVPDE  109 (110)
T ss_dssp             EEEEECTTSCEEEEEEECTTGGGGSTTC
T ss_pred             cccccCCCCCeeeEEecchhhHhhcCCC
Confidence            4321 112    2699999999999875

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.19  E-value=1.8e-11  Score=104.65  Aligned_cols=96  Identities=15%  Similarity=0.246  Sum_probs=75.2

Q ss_pred             HHHHHhcchhhHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEE
Q 024046          174 HEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHV  245 (273)
Q Consensus       174 ~~am~~~~~~~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~  245 (273)
                      .+++.......+..+....+ +++..+|||||||+|.++..|++++ +.+++++|+ |.+++.|+..       ++|+++
T Consensus        45 ~~a~~~~~~~~~~~l~~~~~-l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~  122 (282)
T d2o57a1          45 REASLRTDEWLASELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVK  122 (282)
T ss_dssp             HHHHHHHHHHHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhccccccccccccccc
Confidence            33444333334445555555 7888999999999999999999886 578999998 8888777642       789999


Q ss_pred             EcccCC-CCCCC--CEEEecccccccCCC
Q 024046          246 GGNMFE-SVPEG--DAILMKVGNFENYQS  271 (273)
Q Consensus       246 ~gD~f~-~~p~~--D~~~l~~vLHd~~~~  271 (273)
                      .+|+.+ |+|.+  |+|++..++|+++|.
T Consensus       123 ~~d~~~l~~~~~sfD~V~~~~~l~h~~d~  151 (282)
T d2o57a1         123 YGSFLEIPCEDNSYDFIWSQDAFLHSPDK  151 (282)
T ss_dssp             ECCTTSCSSCTTCEEEEEEESCGGGCSCH
T ss_pred             ccccccccccccccchhhccchhhhccCH
Confidence            999988 77754  999999999998763

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=9.2e-11  Score=98.02  Aligned_cols=85  Identities=14%  Similarity=0.133  Sum_probs=71.0

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcccCCCCCCC
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFESVPEG  256 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gD~f~~~p~~  256 (273)
                      ...+.+.+. +.+..+|||||||+|.++..++++++ .+++++|+ |.+++.|++       .+||+++.+|+.+..+.+
T Consensus        22 ~~~l~~~~~-l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~   99 (245)
T d1nkva_          22 YATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE   99 (245)
T ss_dssp             HHHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred             HHHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccC
Confidence            345666666 88889999999999999999999887 78999998 888877654       278999999999855543


Q ss_pred             --CEEEecccccccCCC
Q 024046          257 --DAILMKVGNFENYQS  271 (273)
Q Consensus       257 --D~~~l~~vLHd~~~~  271 (273)
                        |++++..++|+++|.
T Consensus       100 ~fD~v~~~~~~~~~~d~  116 (245)
T d1nkva_         100 KCDVAACVGATWIAGGF  116 (245)
T ss_dssp             CEEEEEEESCGGGTSSS
T ss_pred             ceeEEEEEehhhccCCH
Confidence              999999999998764

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.08  E-value=1e-10  Score=96.38  Aligned_cols=83  Identities=18%  Similarity=0.268  Sum_probs=69.0

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC------CCCceEEEcccCC-CCCCC-
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE-SVPEG-  256 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gD~f~-~~p~~-  256 (273)
                      ..+++..+ +++..+|||||||+|.++..++++.+  +++++|+ |.+++.|+.      .++|+++.+|+.+ |+|.+ 
T Consensus         5 ~~ll~~~~-l~~~~rVLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~   81 (231)
T d1vl5a_           5 AKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDER   81 (231)
T ss_dssp             HHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTC
T ss_pred             HHHHHhcC-CCCcCEEEEecccCcHHHHHHHHhCC--EEEEEECCHHHHhhhhhcccccccccccccccccccccccccc
Confidence            35666666 88889999999999999999999976  5789998 888877653      3889999999987 67754 


Q ss_pred             -CEEEecccccccCCC
Q 024046          257 -DAILMKVGNFENYQS  271 (273)
Q Consensus       257 -D~~~l~~vLHd~~~~  271 (273)
                       |+|++.++||+.+|.
T Consensus        82 fD~v~~~~~l~~~~d~   97 (231)
T d1vl5a_          82 FHIVTCRIAAHHFPNP   97 (231)
T ss_dssp             EEEEEEESCGGGCSCH
T ss_pred             cccccccccccccCCH
Confidence             999999999998764

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.05  E-value=1.6e-10  Score=95.83  Aligned_cols=81  Identities=20%  Similarity=0.313  Sum_probs=69.3

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCC-CCCCC--
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG--  256 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~~p~~--  256 (273)
                      -+++..+ +++..+|||||||+|.++..++++.+  +++++|+ +.+++.|++.      ++++++.+|..+ |+|.+  
T Consensus         7 ~l~~~~~-~~~~~rILDiGcGtG~~~~~la~~~~--~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~f   83 (234)
T d1xxla_           7 LMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSF   83 (234)
T ss_dssp             HHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCE
T ss_pred             HHHHHhC-CCCCCEEEEeCCcCcHHHHHHHHhCC--eEEEEeCChhhhhhhhhhhccccccccccccccccccccccccc
Confidence            3566677 88999999999999999999999975  5899998 7888877642      789999999987 67755  


Q ss_pred             CEEEecccccccCC
Q 024046          257 DAILMKVGNFENYQ  270 (273)
Q Consensus       257 D~~~l~~vLHd~~~  270 (273)
                      |+|++..++|..+|
T Consensus        84 D~v~~~~~l~~~~d   97 (234)
T d1xxla_          84 DIITCRYAAHHFSD   97 (234)
T ss_dssp             EEEEEESCGGGCSC
T ss_pred             ceeeeeceeecccC
Confidence            99999999998876

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=98.99  E-value=4.7e-10  Score=92.38  Aligned_cols=78  Identities=12%  Similarity=0.135  Sum_probs=65.2

Q ss_pred             CCCcceEEEecCCccHHHHHHHHH--CCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC-CCCCCCEEEecc
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSK--YPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEGDAILMKV  263 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~--~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~-~~p~~D~~~l~~  263 (273)
                      .++..+|||||||+|..+..|++.  +|+.+++++|+ |.+++.|++.       .++++..+|+.. +.+..|++++..
T Consensus        37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~  116 (225)
T d1im8a_          37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNF  116 (225)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEES
T ss_pred             cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEee
Confidence            456789999999999999999986  58999999998 9999988642       578888899876 344459999999


Q ss_pred             cccccCCCC
Q 024046          264 GNFENYQSH  272 (273)
Q Consensus       264 vLHd~~~~~  272 (273)
                      ++|..++++
T Consensus       117 ~l~~~~~~d  125 (225)
T d1im8a_         117 TLQFLPPED  125 (225)
T ss_dssp             CGGGSCGGG
T ss_pred             eccccChhh
Confidence            999987654

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=2.2e-10  Score=94.23  Aligned_cols=77  Identities=13%  Similarity=0.091  Sum_probs=64.1

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCC-CCCCC--CEEEeccc
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG--DAILMKVG  264 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~-~~p~~--D~~~l~~v  264 (273)
                      ..+..+|||||||+|.++..+++.++. +++++|+ |.+++.|++.      ++++|+.+|+.+ +.+.+  |+|++..+
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~  136 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPLFR-EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV  136 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTCS-EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhcCC-EEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            446689999999999999999888875 7899998 8888877642      568999999987 55543  99999999


Q ss_pred             ccccCCCC
Q 024046          265 NFENYQSH  272 (273)
Q Consensus       265 LHd~~~~~  272 (273)
                      ||+.++++
T Consensus       137 l~h~~~~~  144 (222)
T d2ex4a1         137 IGHLTDQH  144 (222)
T ss_dssp             GGGSCHHH
T ss_pred             cccchhhh
Confidence            99998753

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=98.89  E-value=1.1e-09  Score=93.37  Aligned_cols=85  Identities=15%  Similarity=0.196  Sum_probs=68.8

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhCCCC-----CCceEEEcccCC-CCCCC-C
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-D  257 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~-~~p~~-D  257 (273)
                      .++.....+.++.+|||||||+|.++..+++.+|. .+++++|+ |.+++.|++.     .+++|+.+|+.+ +++.. |
T Consensus        17 ~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~~fD   96 (281)
T d2gh1a1          17 FLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYD   96 (281)
T ss_dssp             HHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEE
T ss_pred             HHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccCCce
Confidence            34443322567899999999999999999999985 77999998 8888877642     368999999987 55555 9


Q ss_pred             EEEecccccccCCC
Q 024046          258 AILMKVGNFENYQS  271 (273)
Q Consensus       258 ~~~l~~vLHd~~~~  271 (273)
                      +|++.++||+.+|.
T Consensus        97 ~v~~~~~l~~~~d~  110 (281)
T d2gh1a1          97 IAICHAFLLHMTTP  110 (281)
T ss_dssp             EEEEESCGGGCSSH
T ss_pred             EEEEehhhhcCCCH
Confidence            99999999998764

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=98.87  E-value=6.6e-10  Score=93.54  Aligned_cols=85  Identities=14%  Similarity=0.204  Sum_probs=68.7

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----CCCceEEEcccCC-CCCCC--C
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE-SVPEG--D  257 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~ri~~~~gD~f~-~~p~~--D  257 (273)
                      ..+++.++ ..+..+|||||||+|.++..|++.+++ +++++|. +.+++.|++    .++++++.+|+.+ +++.+  |
T Consensus        83 ~~fl~~l~-~~~~~~vLD~GcG~G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD  160 (254)
T d1xtpa_          83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD  160 (254)
T ss_dssp             HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred             HHHHhhCC-CCCCCeEEEecccCChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccc
Confidence            34556665 557789999999999999999988776 6889997 888888764    2668999999977 44443  9


Q ss_pred             EEEecccccccCCCC
Q 024046          258 AILMKVGNFENYQSH  272 (273)
Q Consensus       258 ~~~l~~vLHd~~~~~  272 (273)
                      +|++..+||+++|++
T Consensus       161 ~I~~~~vl~hl~d~d  175 (254)
T d1xtpa_         161 LIVIQWTAIYLTDAD  175 (254)
T ss_dssp             EEEEESCGGGSCHHH
T ss_pred             eEEeeccccccchhh
Confidence            999999999998753

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.82  E-value=1.9e-09  Score=87.82  Aligned_cols=75  Identities=16%  Similarity=0.271  Sum_probs=62.5

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCC-CCCCC--CEEEecccc
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG--DAILMKVGN  265 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~-~~p~~--D~~~l~~vL  265 (273)
                      +++..+|||||||+|.++..+++.  ..+++++|+ +.+++.|++.     ..++++.+|+.+ +++.+  |+|++..++
T Consensus        35 l~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l  112 (226)
T d1ve3a1          35 MKKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSI  112 (226)
T ss_dssp             CCSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCG
T ss_pred             cCCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecch
Confidence            356689999999999999999986  457899998 8888887642     578999999988 67654  999999999


Q ss_pred             cccCCC
Q 024046          266 FENYQS  271 (273)
Q Consensus       266 Hd~~~~  271 (273)
                      |+++++
T Consensus       113 ~~~~~~  118 (226)
T d1ve3a1         113 VHFEPL  118 (226)
T ss_dssp             GGCCHH
T ss_pred             hhCChh
Confidence            998743

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.81  E-value=3.2e-09  Score=89.84  Aligned_cols=72  Identities=18%  Similarity=0.322  Sum_probs=63.2

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-CCCceEEEcccCC-CCCCC--CEEEecccccc
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFE-SVPEG--DAILMKVGNFE  267 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-~~ri~~~~gD~f~-~~p~~--D~~~l~~vLHd  267 (273)
                      .+..+|||||||+|.++..+++.+|+.+++++|+ |.+++.|++ .++++++.+|... |++.+  |+|+...++|.
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~  159 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK  159 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH
Confidence            4678999999999999999999999999999998 888888765 4899999999988 67754  99998877765

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.79  E-value=3.4e-09  Score=87.16  Aligned_cols=75  Identities=13%  Similarity=0.178  Sum_probs=62.4

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC--CCceEEEcccCC-CCCCC-CEEEecccccccC
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFE-SVPEG-DAILMKVGNFENY  269 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~--~ri~~~~gD~f~-~~p~~-D~~~l~~vLHd~~  269 (273)
                      +....+|||||||+|.++..++++..  +++++|+ |+.++.|+..  ++++++.+|+.. +.++. |+|++.++||+.+
T Consensus        18 ~~~~~~VLDiGcG~G~~~~~l~~~g~--~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~vleh~~   95 (225)
T d2p7ia1          18 FFRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHID   95 (225)
T ss_dssp             GCCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCS
T ss_pred             hCCCCcEEEEeCCCcHHHHHHHHcCC--eEEEEeCcHHHhhhhhcccccccccccccccccccccccccccccceeEecC
Confidence            44567899999999999999999875  4899998 8888888743  679999999877 34444 9999999999887


Q ss_pred             CC
Q 024046          270 QS  271 (273)
Q Consensus       270 ~~  271 (273)
                      |+
T Consensus        96 d~   97 (225)
T d2p7ia1          96 DP   97 (225)
T ss_dssp             SH
T ss_pred             CH
Confidence            64

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.78  E-value=6.1e-09  Score=83.87  Aligned_cols=82  Identities=15%  Similarity=0.081  Sum_probs=64.5

Q ss_pred             HHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC------CCCceEEEcccCCCCC-CC-CE
Q 024046          188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFESVP-EG-DA  258 (273)
Q Consensus       188 il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gD~f~~~p-~~-D~  258 (273)
                      ++.... +-.+.+|||||||+|..+..++++.+  +++++|+ +.+++.++.      .+++++..+|+.+..+ .. |+
T Consensus        22 ~~~~~~-~~~~grvLDiGcG~G~~~~~la~~g~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~   98 (198)
T d2i6ga1          22 VLAAAK-VVAPGRTLDLGCGNGRNSLYLAANGY--DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDF   98 (198)
T ss_dssp             HHHHHT-TSCSCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEE
T ss_pred             HHHHcc-cCCCCcEEEECCCCCHHHHHHHHHhh--hhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccE
Confidence            334333 44567999999999999999999965  5899998 777776653      2679999999998444 44 99


Q ss_pred             EEecccccccCCCC
Q 024046          259 ILMKVGNFENYQSH  272 (273)
Q Consensus       259 ~~l~~vLHd~~~~~  272 (273)
                      |++..++|..++++
T Consensus        99 I~~~~~~~~~~~~~  112 (198)
T d2i6ga1          99 ILSTVVMMFLEAQT  112 (198)
T ss_dssp             EEEESCGGGSCTTH
T ss_pred             EEEeeeeecCCHHH
Confidence            99999999987753

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.77  E-value=7.5e-09  Score=85.90  Aligned_cols=80  Identities=20%  Similarity=0.277  Sum_probs=62.6

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCC-CCCCC-CE
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-DA  258 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~-~~p~~-D~  258 (273)
                      .++..+. ..+..+|||||||+|.++..|+++..  +++++|+ |.+++.|++.     .+|+++.+|+.+ +++.. |+
T Consensus        32 ~~~~~~~-~~~~~~iLDiGcGtG~~~~~l~~~~~--~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD~  108 (251)
T d1wzna1          32 EIFKEDA-KREVRRVLDLACGTGIPTLELAERGY--EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDA  108 (251)
T ss_dssp             HHHHHTC-SSCCCEEEEETCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEE
T ss_pred             HHHHHhc-CCCCCEEEEeCCCCCccchhhcccce--EEEEEeeccccccccccccccccccchheehhhhhcccccccch
Confidence            4445544 55678999999999999999999864  6899998 8899888753     579999999987 66654 98


Q ss_pred             EEec-ccccccC
Q 024046          259 ILMK-VGNFENY  269 (273)
Q Consensus       259 ~~l~-~vLHd~~  269 (273)
                      |++. +++|..+
T Consensus       109 I~~~~~~~~~~~  120 (251)
T d1wzna1         109 VTMFFSTIMYFD  120 (251)
T ss_dssp             EEECSSGGGGSC
T ss_pred             HhhhhhhhhcCC
Confidence            8875 5666554

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=98.71  E-value=1.5e-08  Score=81.75  Aligned_cols=68  Identities=18%  Similarity=0.122  Sum_probs=56.1

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCCCCceEEEcccCC-CCCCC--CEEEecccccccCCC
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILMKVGNFENYQS  271 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gD~f~-~~p~~--D~~~l~~vLHd~~~~  271 (273)
                      +..+|||||||+|.++..+.+      .+++|. |.+++.|++ .+++++.+|+.+ +++.+  |+|++.++||+.+|.
T Consensus        36 ~~~~vLDiGcG~G~~~~~~~~------~~giD~s~~~~~~a~~-~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d~  107 (208)
T d1vlma_          36 PEGRGVEIGVGTGRFAVPLKI------KIGVEPSERMAEIARK-RGVFVLKGTAENLPLKDESFDFALMVTTICFVDDP  107 (208)
T ss_dssp             CSSCEEEETCTTSTTHHHHTC------CEEEESCHHHHHHHHH-TTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH
T ss_pred             CCCeEEEECCCCcccccccce------EEEEeCChhhcccccc-ccccccccccccccccccccccccccccccccccc
Confidence            345899999999999888743      478998 888888875 469999999987 66654  999999999999763

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=98.68  E-value=1.3e-08  Score=86.19  Aligned_cols=67  Identities=19%  Similarity=0.342  Sum_probs=58.8

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCCCCCC--CEEEec
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPEG--DAILMK  262 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~p~~--D~~~l~  262 (273)
                      +...+|||+|||+|..++.+++.+|+++++..|. |..++.|+.+      .||+++.+|+|++++..  |+++..
T Consensus       107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~fDlIvsN  182 (274)
T d2b3ta1         107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSN  182 (274)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEEC
T ss_pred             ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCCCceeEEEec
Confidence            4567899999999999999999999999999998 8888887753      68999999999988853  988764

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.68  E-value=1.1e-08  Score=82.14  Aligned_cols=78  Identities=15%  Similarity=0.286  Sum_probs=62.8

Q ss_pred             HHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC--------CCCceEEEcccCCCCCCC--
Q 024046          188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS--------YAGVEHVGGNMFESVPEG--  256 (273)
Q Consensus       188 il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~--------~~ri~~~~gD~f~~~p~~--  256 (273)
                      +++.++ ..+..+|||||||+|.++..+++.+|+  ++++|+ |.+++.++.        ..+++++.+|++++++..  
T Consensus        44 Li~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~--v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~f  120 (194)
T d1dusa_          44 LVENVV-VDKDDDILDLGCGYGVIGIALADEVKS--TTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKY  120 (194)
T ss_dssp             HHHHCC-CCTTCEEEEETCTTSHHHHHHGGGSSE--EEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCE
T ss_pred             HHHhCC-cCCCCeEEEEeecCChhHHHHHhhccc--cceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCCc
Confidence            455565 567789999999999999999999885  677888 887877753        257999999999977653  


Q ss_pred             CEEEeccccccc
Q 024046          257 DAILMKVGNFEN  268 (273)
Q Consensus       257 D~~~l~~vLHd~  268 (273)
                      |+|++.-..|..
T Consensus       121 D~Ii~~~p~~~~  132 (194)
T d1dusa_         121 NKIITNPPIRAG  132 (194)
T ss_dssp             EEEEECCCSTTC
T ss_pred             eEEEEcccEEec
Confidence            999997777654

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=98.63  E-value=1.7e-08  Score=83.07  Aligned_cols=75  Identities=20%  Similarity=0.216  Sum_probs=60.4

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCCCCceEEEcccCC-CCCCC--CEEEe-cccccccC
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILM-KVGNFENY  269 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~ri~~~~gD~f~-~~p~~--D~~~l-~~vLHd~~  269 (273)
                      .+...+|||||||+|.++..+++.  ..+++++|. +.+++.|++.....++.+|+.+ ++|.+  |+|++ ..++|..+
T Consensus        40 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~  117 (246)
T d2avna1          40 LKNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVE  117 (246)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCS
T ss_pred             cCCCCEEEEECCCCchhccccccc--ceEEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhh
Confidence            456789999999999999999886  568999998 8899988865444577888877 67654  99886 57899877


Q ss_pred             CC
Q 024046          270 QS  271 (273)
Q Consensus       270 ~~  271 (273)
                      |.
T Consensus       118 d~  119 (246)
T d2avna1         118 NK  119 (246)
T ss_dssp             CH
T ss_pred             hH
Confidence            64

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.59  E-value=3.4e-08  Score=82.41  Aligned_cols=81  Identities=15%  Similarity=0.140  Sum_probs=63.3

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcccCC-CC-CC-
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFE-SV-PE-  255 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gD~f~-~~-p~-  255 (273)
                      .++..+  .++..+|||||||+|..+..+++..+. +.+++|+ |.+++.|+.       ..++.+..+|.+. ++ +. 
T Consensus        16 ~lI~~~--~~~~~~VLDlGCG~G~~~~~~~~~~~~-~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~   92 (252)
T d1ri5a_          16 CLIRLY--TKRGDSVLDLGCGKGGDLLKYERAGIG-EYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGK   92 (252)
T ss_dssp             HHHHHH--CCTTCEEEEETCTTTTTHHHHHHHTCS-EEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSS
T ss_pred             HHHHHh--CCCcCEEEEecccCcHHHHHHHHcCCC-eEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccc
Confidence            345555  356789999999999999999888553 6899998 888887753       1579999999987 34 23 


Q ss_pred             C-CEEEecccccccCC
Q 024046          256 G-DAILMKVGNFENYQ  270 (273)
Q Consensus       256 ~-D~~~l~~vLHd~~~  270 (273)
                      . |+|++..++|...+
T Consensus        93 ~fD~V~~~~~l~~~~~  108 (252)
T d1ri5a_          93 EFDVISSQFSFHYAFS  108 (252)
T ss_dssp             CEEEEEEESCGGGGGS
T ss_pred             cceEEEEcceeeecCC
Confidence            3 99999999998643

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.54  E-value=3e-08  Score=79.10  Aligned_cols=77  Identities=19%  Similarity=0.189  Sum_probs=60.9

Q ss_pred             HHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCC-CC--CC
Q 024046          188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES-VP--EG  256 (273)
Q Consensus       188 il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~-~p--~~  256 (273)
                      ++..+. ..+..+|||||||+|.+++.+++..+  +++.+|. |..++.|+++       ++|+++.+|+.+. .+  ..
T Consensus        25 il~~l~-~~~g~~VLDiGcGsG~~s~~lA~~~~--~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~  101 (186)
T d1l3ia_          25 IMCLAE-PGKNDVAVDVGCGTGGVTLELAGRVR--RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDI  101 (186)
T ss_dssp             HHHHHC-CCTTCEEEEESCTTSHHHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCE
T ss_pred             HHHhcC-CCCCCEEEEEECCeEcccccccccce--EEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCc
Confidence            455555 77889999999999999999998875  6899998 8888887652       7999999998772 23  34


Q ss_pred             CEEEecccccc
Q 024046          257 DAILMKVGNFE  267 (273)
Q Consensus       257 D~~~l~~vLHd  267 (273)
                      |++++....++
T Consensus       102 D~v~~~~~~~~  112 (186)
T d1l3ia_         102 DIAVVGGSGGE  112 (186)
T ss_dssp             EEEEESCCTTC
T ss_pred             CEEEEeCcccc
Confidence            99988765544

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.53  E-value=3.2e-08  Score=82.09  Aligned_cols=71  Identities=13%  Similarity=0.115  Sum_probs=56.9

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCC-CCCCC-CEEEec-ccccc
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-DAILMK-VGNFE  267 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~-~~p~~-D~~~l~-~vLHd  267 (273)
                      ...+|||||||+|.++..++++.+  +++++|+ |.+++.|++.     .+++++.+|+.. ++++. |+|++. +++|.
T Consensus        37 ~~~~vLDiGCG~G~~~~~l~~~g~--~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~~  114 (246)
T d1y8ca_          37 VFDDYLDLACGTGNLTENLCPKFK--NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY  114 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSS--EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred             CCCeEEEEeCcCCHHHHHHHHhCC--ccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeeec
Confidence            457999999999999999999976  5899998 8888887642     579999999987 45554 988754 66665


Q ss_pred             cC
Q 024046          268 NY  269 (273)
Q Consensus       268 ~~  269 (273)
                      ..
T Consensus       115 ~~  116 (246)
T d1y8ca_         115 II  116 (246)
T ss_dssp             CC
T ss_pred             cC
Confidence            53

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=98.53  E-value=4.6e-08  Score=77.51  Aligned_cols=80  Identities=14%  Similarity=0.096  Sum_probs=63.8

Q ss_pred             HhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------------------CCceEEEccc
Q 024046          189 LEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------------------AGVEHVGGNM  249 (273)
Q Consensus       189 l~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------------------~ri~~~~gD~  249 (273)
                      ...+. .++..+|||||||+|..+..|+++  ..+++++|+ +.+++.|++.                  ..+++..+|+
T Consensus        13 ~~~l~-~~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   89 (201)
T d1pjza_          13 WSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF   89 (201)
T ss_dssp             HHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC
T ss_pred             HHHcC-CCCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccc
Confidence            34444 778899999999999999999998  678999998 8888877641                  4578999999


Q ss_pred             CCCCC--C-C-CEEEecccccccCCC
Q 024046          250 FESVP--E-G-DAILMKVGNFENYQS  271 (273)
Q Consensus       250 f~~~p--~-~-D~~~l~~vLHd~~~~  271 (273)
                      +...+  . . |+++.+.++|..+++
T Consensus        90 ~~l~~~~~~~~D~i~~~~~l~~l~~~  115 (201)
T d1pjza_          90 FALTARDIGHCAAFYDRAAMIALPAD  115 (201)
T ss_dssp             SSSTHHHHHSEEEEEEESCGGGSCHH
T ss_pred             cccccccccceeEEEEEeeeEecchh
Confidence            98332  2 3 999999999987653

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.50  E-value=5.4e-08  Score=78.90  Aligned_cols=70  Identities=17%  Similarity=0.227  Sum_probs=55.4

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC------CCCceEEEcccCC---CCCCC--CEEEecccc
Q 024046          198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE---SVPEG--DAILMKVGN  265 (273)
Q Consensus       198 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gD~f~---~~p~~--D~~~l~~vL  265 (273)
                      ...|||||||+|.++..+++.+|+..++++|+ +..+..|..      .++|.++.+|...   -+|.+  |.+++....
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~  109 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD  109 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccccc
Confidence            45799999999999999999999999999998 665655432      3789999999875   26654  887776554


Q ss_pred             cc
Q 024046          266 FE  267 (273)
Q Consensus       266 Hd  267 (273)
                      ..
T Consensus       110 P~  111 (204)
T d2fcaa1         110 PW  111 (204)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=8.5e-08  Score=83.28  Aligned_cols=81  Identities=12%  Similarity=0.190  Sum_probs=65.3

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC---------------CCCceEEEccc
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS---------------YAGVEHVGGNM  249 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---------------~~ri~~~~gD~  249 (273)
                      ..+++.+. +++..+|+|||||.|.++..+++.+|..+++++|+ |..++.|+.               ..+|+++.||+
T Consensus       141 ~~~~~~~~-l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~  219 (328)
T d1nw3a_         141 AQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF  219 (328)
T ss_dssp             HHHHHHSC-CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCT
T ss_pred             HHHHHHcC-CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcc
Confidence            45667776 78889999999999999999999999989999998 777766542               25799999999


Q ss_pred             CC-CCC----CCCEEEecccccc
Q 024046          250 FE-SVP----EGDAILMKVGNFE  267 (273)
Q Consensus       250 f~-~~p----~~D~~~l~~vLHd  267 (273)
                      .+ ++.    .+|++++.+.+|.
T Consensus       220 ~~~~~~~~~~~advi~~~~~~f~  242 (328)
T d1nw3a_         220 LSEEWRERIANTSVIFVNNFAFG  242 (328)
T ss_dssp             TSHHHHHHHHHCSEEEECCTTTC
T ss_pred             cccccccccCcceEEEEcceecc
Confidence            97 333    3588888776653

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.45  E-value=1.4e-07  Score=76.81  Aligned_cols=83  Identities=22%  Similarity=0.315  Sum_probs=68.3

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhCCC------CCCceEEEcccCCCCC-CC-
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFESVP-EG-  256 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gD~f~~~p-~~-  256 (273)
                      .+++.++ +++..+|||||||+|..+..+++.. |+.+++.+|. |+.++.|+.      .+++.++.+|..+..| .+ 
T Consensus        66 ~~l~~l~-l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~  144 (213)
T d1dl5a1          66 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSP  144 (213)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred             HHHHhhh-ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccc
Confidence            4566666 8889999999999999999999876 6788999997 888887765      2789999999988544 33 


Q ss_pred             -CEEEecccccccCC
Q 024046          257 -DAILMKVGNFENYQ  270 (273)
Q Consensus       257 -D~~~l~~vLHd~~~  270 (273)
                       |+|++...+++.++
T Consensus       145 fD~I~~~~~~~~~p~  159 (213)
T d1dl5a1         145 YDVIFVTVGVDEVPE  159 (213)
T ss_dssp             EEEEEECSBBSCCCH
T ss_pred             hhhhhhhccHHHhHH
Confidence             99999999887654

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=2.7e-07  Score=75.66  Aligned_cols=75  Identities=12%  Similarity=0.055  Sum_probs=61.2

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-----------------------CCCceEEEcccC
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----------------------YAGVEHVGGNMF  250 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----------------------~~ri~~~~gD~f  250 (273)
                      .+...+|||+|||.|..+..|++.  ..+++++|+ |.+|+.|++                       ..+++++.+|++
T Consensus        43 ~~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  120 (229)
T d2bzga1          43 GKSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF  120 (229)
T ss_dssp             TCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence            567789999999999999999987  568999998 878875421                       158999999999


Q ss_pred             C--CCCCC--CEEEecccccccCCC
Q 024046          251 E--SVPEG--DAILMKVGNFENYQS  271 (273)
Q Consensus       251 ~--~~p~~--D~~~l~~vLHd~~~~  271 (273)
                      .  +.+.+  |+++.+.++|..+++
T Consensus       121 ~l~~~~~~~fd~i~~~~~l~~~~~~  145 (229)
T d2bzga1         121 DLPRTNIGKFDMIWDRGALVAINPG  145 (229)
T ss_dssp             GGGGSCCCCEEEEEESSSTTTSCGG
T ss_pred             hccccccCceeEEEEEEEEEeccch
Confidence            8  23333  999999999988765

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.39  E-value=1.3e-07  Score=77.91  Aligned_cols=76  Identities=9%  Similarity=0.115  Sum_probs=62.1

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCC----CCCCceEEEcccCCCCC--C--CCEEEecccc
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP----SYAGVEHVGGNMFESVP--E--GDAILMKVGN  265 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~----~~~ri~~~~gD~f~~~p--~--~D~~~l~~vL  265 (273)
                      +++..+|||||||+|..+..+++..|+-+++++|+ |.+++.+.    ..+++.++.+|...+.+  .  .|+.++.+.+
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~  151 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDV  151 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEECC
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeeccc
Confidence            66789999999999999999999999999999998 87777554    34788999999887422  2  2888888888


Q ss_pred             cccCC
Q 024046          266 FENYQ  270 (273)
Q Consensus       266 Hd~~~  270 (273)
                      |.+.+
T Consensus       152 ~~~~~  156 (230)
T d1g8sa_         152 AQPNQ  156 (230)
T ss_dssp             CSTTH
T ss_pred             cchHH
Confidence            86654

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.39  E-value=2.9e-07  Score=74.49  Aligned_cols=65  Identities=20%  Similarity=0.305  Sum_probs=51.9

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC------CCCceEEEcccCC---CCCCC--CEEEec
Q 024046          198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE---SVPEG--DAILMK  262 (273)
Q Consensus       198 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gD~f~---~~p~~--D~~~l~  262 (273)
                      ...|||||||.|.++..+++.+|+..++++|+ +.++..|..      .++|.++.+|...   .+|.+  |.+++.
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~  108 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLN  108 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEE
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccc
Confidence            45799999999999999999999999999998 665665532      3789999999865   35653  776643

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.32  E-value=4.7e-07  Score=76.73  Aligned_cols=84  Identities=13%  Similarity=0.183  Sum_probs=66.5

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcccCCCCCC-
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFESVPE-  255 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gD~f~~~p~-  255 (273)
                      .+.+++.+. +++..+|||||||.|.++..++++++ .+++++|+ +..++.|++       ..++.+...|+.. +|. 
T Consensus        41 ~~~~~~~l~-l~~g~~VLDiGCG~G~~a~~~a~~~g-~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~-~~~~  117 (280)
T d2fk8a1          41 VDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-FAEP  117 (280)
T ss_dssp             HHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-CCCC
T ss_pred             HHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHhCc-eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhh-hccc
Confidence            456778877 88899999999999999999998886 59999998 666665543       2678888888654 454 


Q ss_pred             CCEEEecccccccCCC
Q 024046          256 GDAILMKVGNFENYQS  271 (273)
Q Consensus       256 ~D~~~l~~vLHd~~~~  271 (273)
                      .|.|+...+++...++
T Consensus       118 fD~i~si~~~eh~~~~  133 (280)
T d2fk8a1         118 VDRIVSIEAFEHFGHE  133 (280)
T ss_dssp             CSEEEEESCGGGTCGG
T ss_pred             hhhhhHhhHHHHhhhh
Confidence            4999999999887654

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.30  E-value=5.9e-07  Score=75.36  Aligned_cols=88  Identities=15%  Similarity=0.264  Sum_probs=70.1

Q ss_pred             HHHHHHhcchhh----HHHHHhhcccCCCcceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhCCC--------
Q 024046          173 YHEAMFNHSTIA----MERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPS--------  238 (273)
Q Consensus       173 f~~am~~~~~~~----~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~~~Dl-p~v~~~a~~--------  238 (273)
                      |...|...++..    +..++...+ .++..+|||+|||+|.++..|++. .|+-+.+.+|. ++.++.|++        
T Consensus        69 ~~~~~~r~tqiiypkD~s~Ii~~l~-i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~  147 (264)
T d1i9ga_          69 YVMSMPRGPQVIYPKDAAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ  147 (264)
T ss_dssp             HHTTSCSCSCCCCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTS
T ss_pred             HHhhccCCccccchHHHHHHHHHhC-CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccC
Confidence            444555555532    445667777 888999999999999999999998 79999999998 888887764        


Q ss_pred             -CCCceEEEcccCC-CCCCC--CEEEe
Q 024046          239 -YAGVEHVGGNMFE-SVPEG--DAILM  261 (273)
Q Consensus       239 -~~ri~~~~gD~f~-~~p~~--D~~~l  261 (273)
                       .++++++.+|+.+ ++|++  |++++
T Consensus       148 ~~~nv~~~~~d~~~~~~~~~~fDaV~l  174 (264)
T d1i9ga_         148 PPDNWRLVVSDLADSELPDGSVDRAVL  174 (264)
T ss_dssp             CCTTEEEECSCGGGCCCCTTCEEEEEE
T ss_pred             CCceEEEEecccccccccCCCcceEEE
Confidence             2789999999987 67764  99886

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.29  E-value=4.8e-07  Score=73.39  Aligned_cols=60  Identities=10%  Similarity=0.078  Sum_probs=52.7

Q ss_pred             cccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----CCCceEEEcccCCC
Q 024046          192 YEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFES  252 (273)
Q Consensus       192 ~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~ri~~~~gD~f~~  252 (273)
                      ++ +++..+|||||||+|..+..+++..|+.+++++|. |.+++.++.    .+++.++.+|...+
T Consensus        52 l~-lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~  116 (209)
T d1nt2a_          52 LK-LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKP  116 (209)
T ss_dssp             CC-CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCG
T ss_pred             CC-CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCc
Confidence            44 77889999999999999999999999999999998 888887754    47899999998873

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=4.2e-07  Score=76.59  Aligned_cols=87  Identities=15%  Similarity=0.158  Sum_probs=54.6

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHH----HHCCCCe--EEEeec-hHHHHhCCC----C---CCceEE--Ecc
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMIT----SKYPQIK--AVNFDL-PHVVQDAPS----Y---AGVEHV--GGN  248 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~----~~~P~l~--~~~~Dl-p~v~~~a~~----~---~ri~~~--~gD  248 (273)
                      .+.++..+...+..-+|||||||+|.++..++    .++|+..  .+++|. +.+++.+++    .   +.+.+.  ..+
T Consensus        28 l~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~  107 (280)
T d1jqea_          28 LPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKET  107 (280)
T ss_dssp             HHHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSC
T ss_pred             HHHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhh
Confidence            34455544323344589999999999866654    4577754  588897 777776643    2   333332  222


Q ss_pred             c-------CCCCCC-C-CEEEecccccccCCC
Q 024046          249 M-------FESVPE-G-DAILMKVGNFENYQS  271 (273)
Q Consensus       249 ~-------f~~~p~-~-D~~~l~~vLHd~~~~  271 (273)
                      +       ..+.+. . |+|++.++||+++|.
T Consensus       108 ~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~  139 (280)
T d1jqea_         108 SSEYQSRMLEKKELQKWDFIHMIQMLYYVKDI  139 (280)
T ss_dssp             HHHHHHHHTTSSSCCCEEEEEEESCGGGCSCH
T ss_pred             hhhhcchhcccCCCCceeEEEEccceecCCCH
Confidence            2       112333 3 999999999998763

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=98.26  E-value=6.8e-07  Score=74.40  Aligned_cols=88  Identities=14%  Similarity=0.172  Sum_probs=60.9

Q ss_pred             HHHHHHhcchhh----HHHHHhhcccCCCcceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhCCCC-------
Q 024046          173 YHEAMFNHSTIA----MERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSY-------  239 (273)
Q Consensus       173 f~~am~~~~~~~----~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~~~Dl-p~v~~~a~~~-------  239 (273)
                      |...|...++..    +..++...+ ..+..+|||+|||+|.++..+++. .|+-+.+.+|. ++.++.|+++       
T Consensus        58 ~~~~~~r~~qiiypkD~~~Ii~~l~-i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~  136 (250)
T d1yb2a1          58 FGRVIRRNTQIISEIDASYIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI  136 (250)
T ss_dssp             HHHHC------------------CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC
T ss_pred             HHhhCCCCCcccCHHHHHHHHHHcC-CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCC
Confidence            444454444432    234556666 778899999999999999999987 68889999998 7777766542       


Q ss_pred             CCceEEEcccCCCCCCC--CEEEe
Q 024046          240 AGVEHVGGNMFESVPEG--DAILM  261 (273)
Q Consensus       240 ~ri~~~~gD~f~~~p~~--D~~~l  261 (273)
                      ++|++..+|+.+.+++.  |++++
T Consensus       137 ~nv~~~~~Di~~~~~~~~fD~V~l  160 (250)
T d1yb2a1         137 GNVRTSRSDIADFISDQMYDAVIA  160 (250)
T ss_dssp             TTEEEECSCTTTCCCSCCEEEEEE
T ss_pred             CceEEEEeeeecccccceeeeeee
Confidence            68999999999877754  98876

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=4.2e-07  Score=74.59  Aligned_cols=65  Identities=22%  Similarity=0.306  Sum_probs=50.7

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCC---CCCCC--CEEEe
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE---SVPEG--DAILM  261 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~---~~p~~--D~~~l  261 (273)
                      ....+|||||||+|..+..++++.|. +.+++|+ |.+++.|++.     .++.++.+|...   ++|.+  |.+++
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~~~-~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~f  127 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILY  127 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEE
T ss_pred             cCCCeEEEeeccchHHHHHHHHcCCC-eEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceee
Confidence            45679999999999999999988764 7899998 8899887642     567888877654   56654  77663

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.19  E-value=1.7e-06  Score=73.31  Aligned_cols=83  Identities=19%  Similarity=0.192  Sum_probs=64.0

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcccCCCCCC-
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFESVPE-  255 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gD~f~~~p~-  255 (273)
                      .+.+++.+. +++..+|||||||.|..+..++++++ ++++++++ ++-++.|++       .+++++..+|+-. +|. 
T Consensus        51 ~~~~~~~l~-l~~G~~VLDiGCG~G~~a~~~a~~~g-~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~-~~~~  127 (285)
T d1kpga_          51 IDLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-FDEP  127 (285)
T ss_dssp             HHHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-CCCC
T ss_pred             HHHHHHHcC-CCCCCEEEEecCcchHHHHHHHhcCC-cceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhc-cccc
Confidence            356677777 88899999999999999999999995 89999998 554554432       2899999999854 454 


Q ss_pred             CCEEEecccccccCC
Q 024046          256 GDAILMKVGNFENYQ  270 (273)
Q Consensus       256 ~D~~~l~~vLHd~~~  270 (273)
                      .|.++...++.....
T Consensus       128 fD~i~si~~~eh~~~  142 (285)
T d1kpga_         128 VDRIVSIGAFEHFGH  142 (285)
T ss_dssp             CSEEEEESCGGGTCT
T ss_pred             ccceeeehhhhhcCc
Confidence            387777766665543

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=1.8e-06  Score=70.70  Aligned_cols=84  Identities=23%  Similarity=0.181  Sum_probs=65.7

Q ss_pred             HHHhhcc-cCCCcceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhCCCC-----------CCceEEEcccCCC
Q 024046          187 RILEHYE-GFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSY-----------AGVEHVGGNMFES  252 (273)
Q Consensus       187 ~il~~~~-~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~~~Dl-p~v~~~a~~~-----------~ri~~~~gD~f~~  252 (273)
                      .+++.+. ..++..+|||||||+|..+..+++. .|.-+++.+|. +++++.|+++           ++++++.||.+..
T Consensus        65 ~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~  144 (224)
T d1i1na_          65 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG  144 (224)
T ss_dssp             HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC
T ss_pred             HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccc
Confidence            3455442 2667889999999999999888885 67889999998 8888777532           6899999999985


Q ss_pred             CC-CC--CEEEecccccccCC
Q 024046          253 VP-EG--DAILMKVGNFENYQ  270 (273)
Q Consensus       253 ~p-~~--D~~~l~~vLHd~~~  270 (273)
                      .+ .+  |+|++...+++.++
T Consensus       145 ~~~~~~fD~I~~~~~~~~ip~  165 (224)
T d1i1na_         145 YAEEAPYDAIHVGAAAPVVPQ  165 (224)
T ss_dssp             CGGGCCEEEEEECSBBSSCCH
T ss_pred             cchhhhhhhhhhhcchhhcCH
Confidence            44 33  99999998887653

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.18  E-value=1.1e-06  Score=70.35  Aligned_cols=67  Identities=16%  Similarity=0.198  Sum_probs=57.8

Q ss_pred             hHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-----CCCceEEEcccCC
Q 024046          184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----YAGVEHVGGNMFE  251 (273)
Q Consensus       184 ~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~ri~~~~gD~f~  251 (273)
                      +..++++.+. ..+...+||++||+|.++..+++++|+.+++++|. |++++.|+.     .+|++++.++|-+
T Consensus        11 ll~evi~~l~-~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~   83 (192)
T d1m6ya2          11 MVREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYRE   83 (192)
T ss_dssp             THHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGG
T ss_pred             HHHHHHHhhC-CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhh
Confidence            3456777776 66778999999999999999999999999999998 899988864     2799999999965

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.17  E-value=1.1e-06  Score=77.99  Aligned_cols=81  Identities=14%  Similarity=0.263  Sum_probs=61.3

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC---------------CCceE-EEcc
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------------AGVEH-VGGN  248 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~---------------~ri~~-~~gD  248 (273)
                      ..+++.++ +.+..+|||||||.|..+..+++.+|..+++++|+ |..++.|+..               ..+.+ ..+|
T Consensus       206 ~~Il~~l~-Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~  284 (406)
T d1u2za_         206 SDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS  284 (406)
T ss_dssp             HHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC
T ss_pred             HHHHHHhC-CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeec
Confidence            45667776 88889999999999999999999999888999998 7777777531               22333 4577


Q ss_pred             cCC-C-----CCCCCEEEecccccc
Q 024046          249 MFE-S-----VPEGDAILMKVGNFE  267 (273)
Q Consensus       249 ~f~-~-----~p~~D~~~l~~vLHd  267 (273)
                      ++. +     ++.+|++++.+.+|.
T Consensus       285 f~~~~~~d~~~~~adVV~inn~~f~  309 (406)
T d1u2za_         285 FVDNNRVAELIPQCDVILVNNFLFD  309 (406)
T ss_dssp             STTCHHHHHHGGGCSEEEECCTTCC
T ss_pred             hhhccccccccccceEEEEecccCc
Confidence            765 1     345689988776653

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.15  E-value=1e-06  Score=70.63  Aligned_cols=63  Identities=21%  Similarity=0.328  Sum_probs=52.0

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-CCceEEEcccCCCCCC-CCEEEec
Q 024046          198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFESVPE-GDAILMK  262 (273)
Q Consensus       198 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-~ri~~~~gD~f~~~p~-~D~~~l~  262 (273)
                      ..+|||+|||+|.+++.+++..+. +++++|. |..++.|+.+ .+++++.+|+.+ ++. .|+|++.
T Consensus        49 Gk~VLDlGcGtG~l~i~a~~~ga~-~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~-l~~~fD~Vi~N  114 (197)
T d1ne2a_          49 GRSVIDAGTGNGILACGSYLLGAE-SVTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIMN  114 (197)
T ss_dssp             TSEEEEETCTTCHHHHHHHHTTBS-EEEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEEC
T ss_pred             CCEEEEeCCCCcHHHHHHHHcCCC-cccccccCHHHHHHHHHccccccEEEEehhh-cCCcceEEEeC
Confidence            589999999999999988887665 7999998 8888888764 789999999875 554 3988763

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.13  E-value=2.9e-06  Score=72.07  Aligned_cols=84  Identities=15%  Similarity=0.120  Sum_probs=63.5

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcccCCCCCCC
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFESVPEG  256 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gD~f~~~p~~  256 (273)
                      ...+++... +++..+|||||||.|.++..++++++ ++++++++ ++-++.++.       .+++++...|+-.+-...
T Consensus        50 ~~~~~~~l~-l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~f  127 (291)
T d1kpia_          50 RKLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPV  127 (291)
T ss_dssp             HHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCC
T ss_pred             HHHHHHhcC-CCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccccccc
Confidence            456677777 88999999999999999999999997 69999998 444444432       278999988874321234


Q ss_pred             CEEEecccccccCC
Q 024046          257 DAILMKVGNFENYQ  270 (273)
Q Consensus       257 D~~~l~~vLHd~~~  270 (273)
                      |.|+...++.+..+
T Consensus       128 D~i~sie~~eH~~~  141 (291)
T d1kpia_         128 DRIVSLGAFEHFAD  141 (291)
T ss_dssp             SEEEEESCGGGTTC
T ss_pred             ceEeechhHHhcch
Confidence            99888888766554

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=98.13  E-value=6.1e-07  Score=74.91  Aligned_cols=88  Identities=18%  Similarity=0.328  Sum_probs=60.7

Q ss_pred             HHHHHHHhcchhhHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEE
Q 024046          172 TYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHV  245 (273)
Q Consensus       172 ~f~~am~~~~~~~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~  245 (273)
                      .|-...+..++.....+ ..+  ..+..+|||||||+|.+++.+++..  .+++++|+ |.+++.|+.+     -+++++
T Consensus        98 aFGTG~H~TT~l~l~~l-~~~--~~~g~~VLDiGcGsG~l~i~aa~~g--~~V~gvDis~~av~~A~~na~~n~~~~~~~  172 (254)
T d2nxca1          98 AFGTGHHETTRLALKAL-ARH--LRPGDKVLDLGTGSGVLAIAAEKLG--GKALGVDIDPMVLPQAEANAKRNGVRPRFL  172 (254)
T ss_dssp             ----CCSHHHHHHHHHH-HHH--CCTTCEEEEETCTTSHHHHHHHHTT--CEEEEEESCGGGHHHHHHHHHHTTCCCEEE
T ss_pred             ccCccccchhhHHHHHH-Hhh--cCccCEEEEcccchhHHHHHHHhcC--CEEEEEECChHHHHHHHHHHHHcCCceeEE
Confidence            35555555555554443 333  3466899999999999999888764  57899998 8888877652     356889


Q ss_pred             EcccCCCCCCC--CEEEeccc
Q 024046          246 GGNMFESVPEG--DAILMKVG  264 (273)
Q Consensus       246 ~gD~f~~~p~~--D~~~l~~v  264 (273)
                      .+|+....|.+  |+++..-.
T Consensus       173 ~~d~~~~~~~~~fD~V~ani~  193 (254)
T d2nxca1         173 EGSLEAALPFGPFDLLVANLY  193 (254)
T ss_dssp             ESCHHHHGGGCCEEEEEEECC
T ss_pred             eccccccccccccchhhhccc
Confidence            99988766643  99886533

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.10  E-value=2.1e-06  Score=72.68  Aligned_cols=75  Identities=21%  Similarity=0.258  Sum_probs=55.2

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC----------CCceEEEcccCC---CCC--CC-C
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------AGVEHVGGNMFE---SVP--EG-D  257 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~----------~ri~~~~gD~f~---~~p--~~-D  257 (273)
                      ..+..+|||||||+|.++..|+++  ..+++++|+ |.+++.|++.          .+..+...|+..   +.|  .. |
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd  131 (292)
T d1xvaa_          54 QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFD  131 (292)
T ss_dssp             HTTCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred             hcCCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCce
Confidence            345679999999999999999998  578999998 8888877542          245566777765   244  33 7


Q ss_pred             EEE-ecccccccCCC
Q 024046          258 AIL-MKVGNFENYQS  271 (273)
Q Consensus       258 ~~~-l~~vLHd~~~~  271 (273)
                      +++ +.+++++.+++
T Consensus       132 ~v~~~~~~~~~~~~~  146 (292)
T d1xvaa_         132 AVICLGNSFAHLPDS  146 (292)
T ss_dssp             EEEECSSCGGGSCCT
T ss_pred             EEEEecCchhhcCCc
Confidence            665 45678776654

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.05  E-value=3.1e-06  Score=72.96  Aligned_cols=73  Identities=15%  Similarity=0.247  Sum_probs=55.6

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCC-------CCCceEEEcccCC-CCCCC--CEEEeccccc
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVGGNMFE-SVPEG--DAILMKVGNF  266 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~-------~~ri~~~~gD~f~-~~p~~--D~~~l~~vLH  266 (273)
                      +.++|||||||+|.++..++++... +++++|...++..|+.       .++|+++.+|+.+ ++|..  |+++...+.|
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa~~Ga~-~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~  116 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAAKHGAK-HVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY  116 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCCS-EEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecce
Confidence            4579999999999999988887544 7899998666555543       2789999999998 67743  9998766665


Q ss_pred             ccCC
Q 024046          267 ENYQ  270 (273)
Q Consensus       267 d~~~  270 (273)
                      ....
T Consensus       117 ~~~~  120 (328)
T d1g6q1_         117 FLLY  120 (328)
T ss_dssp             TBST
T ss_pred             eecc
Confidence            4443

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.01  E-value=2.7e-06  Score=72.99  Aligned_cols=73  Identities=18%  Similarity=0.247  Sum_probs=53.9

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCC-------CCCceEEEcccCC-CCCCC--CEEEeccccc
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVGGNMFE-SVPEG--DAILMKVGNF  266 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~-------~~ri~~~~gD~f~-~~p~~--D~~~l~~vLH  266 (273)
                      +.++|||||||+|.++..++++.+. +++++|.......+.+       .++|+++.+|+.+ +.|..  |+++...+.|
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~Ga~-~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~  111 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKAGAR-KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY  111 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCS-EEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred             CcCEEEEEecCCcHHHHHHHHhCCC-EEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence            4578999999999999998887654 7899998443333322       2789999999998 56643  9987765555


Q ss_pred             ccCC
Q 024046          267 ENYQ  270 (273)
Q Consensus       267 d~~~  270 (273)
                      ....
T Consensus       112 ~l~~  115 (316)
T d1oria_         112 CLFY  115 (316)
T ss_dssp             TBTB
T ss_pred             eecc
Confidence            4443

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.00  E-value=4.6e-06  Score=68.13  Aligned_cols=80  Identities=15%  Similarity=0.285  Sum_probs=63.7

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----CCCceEEEcccCCCCCC-C--CE
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFESVPE-G--DA  258 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~ri~~~~gD~f~~~p~-~--D~  258 (273)
                      .++..++ +++..+|||||||+|.++..|++...  +++.+|. |..++.|++    .++++++.+|.+...|+ +  |+
T Consensus        61 ~ml~~L~-l~~g~~VLdIG~GsGy~ta~La~l~~--~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~  137 (224)
T d1vbfa_          61 FMLDELD-LHKGQKVLEIGTGIGYYTALIAEIVD--KVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDR  137 (224)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEE
T ss_pred             HHHHHhh-hcccceEEEecCCCCHHHHHHHHHhc--ccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHHH
Confidence            4566676 88899999999999999998888764  5788887 777776654    38899999999886664 4  99


Q ss_pred             EEecccccccC
Q 024046          259 ILMKVGNFENY  269 (273)
Q Consensus       259 ~~l~~vLHd~~  269 (273)
                      |++...++..+
T Consensus       138 Iiv~~a~~~ip  148 (224)
T d1vbfa_         138 VVVWATAPTLL  148 (224)
T ss_dssp             EEESSBBSSCC
T ss_pred             HHhhcchhhhh
Confidence            99887776654

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=97.99  E-value=4.7e-06  Score=69.84  Aligned_cols=88  Identities=18%  Similarity=0.203  Sum_probs=66.7

Q ss_pred             HHHHHHhcchhh----HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhCCCC-------
Q 024046          173 YHEAMFNHSTIA----MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY-------  239 (273)
Q Consensus       173 f~~am~~~~~~~----~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~~-------  239 (273)
                      |...|...++..    +..++..++ ..+..+|||+|||+|.++..+++.. |+.+++.+|. |+.++.|+++       
T Consensus        76 ~~~~~~r~~qiiypkd~~~Ii~~l~-i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~  154 (266)
T d1o54a_          76 EIMNMKRRTQIVYPKDSSFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI  154 (266)
T ss_dssp             HHHTCCC-CCCCCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCG
T ss_pred             HHhhccCCccccchHHHHHHHHhhC-CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccc
Confidence            444555444432    345677777 8899999999999999999999885 8899999998 8888887652       


Q ss_pred             CCceEEEcccCCCCCCC--CEEEe
Q 024046          240 AGVEHVGGNMFESVPEG--DAILM  261 (273)
Q Consensus       240 ~ri~~~~gD~f~~~p~~--D~~~l  261 (273)
                      +++.+..+|+...++..  |.+++
T Consensus       155 ~~v~~~~~d~~~~~~~~~~D~V~~  178 (266)
T d1o54a_         155 ERVTIKVRDISEGFDEKDVDALFL  178 (266)
T ss_dssp             GGEEEECCCGGGCCSCCSEEEEEE
T ss_pred             cCcEEEeccccccccccceeeeEe
Confidence            68899999987766643  76653

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=7.2e-06  Score=70.04  Aligned_cols=76  Identities=17%  Similarity=0.223  Sum_probs=56.3

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhCCC-------CCCceEEEcccCC-CCCC-C-CEEEeccc
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVGGNMFE-SVPE-G-DAILMKVG  264 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~-------~~ri~~~~gD~f~-~~p~-~-D~~~l~~v  264 (273)
                      ..+.++|||||||+|.+++.++++.+. +++++|..+....+..       .++|+++.+|..+ +.|. . |+++.-.+
T Consensus        33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga~-~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~  111 (311)
T d2fyta1          33 IFKDKVVLDVGCGTGILSMFAAKAGAK-KVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM  111 (311)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCS-EEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred             cCCcCEEEEECCCCCHHHHHHHHcCCC-EEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeee
Confidence            345689999999999999999998764 7899998443322221       2789999999988 5664 3 99988766


Q ss_pred             ccccCCC
Q 024046          265 NFENYQS  271 (273)
Q Consensus       265 LHd~~~~  271 (273)
                      .|....+
T Consensus       112 ~~~~~~e  118 (311)
T d2fyta1         112 GYFLLFE  118 (311)
T ss_dssp             BTTBTTT
T ss_pred             eeecccc
Confidence            6655443

>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator IclR, N-terminal domain
domain: Transcriptional regulator IclR, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.94  E-value=5.2e-06  Score=55.80  Aligned_cols=56  Identities=14%  Similarity=0.198  Sum_probs=49.5

Q ss_pred             hChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhc
Q 024046           47 LGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS  109 (273)
Q Consensus        47 lglfd~L~~~g-~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s  109 (273)
                      +.|++.+...+ |.|+.|||+.+|+    ++..+.|+|..|...|+++++   .++.|.+++..
T Consensus         8 l~IL~~~a~~~~~~s~~eia~~~~~----~~st~~rll~tL~~~g~l~~~---~~g~y~lG~~l   64 (75)
T d1mkma1           8 FEILDFIVKNPGDVSVSEIAEKFNM----SVSNAYKYMVVLEEKGFVLRK---KDKRYVPGYKL   64 (75)
T ss_dssp             HHHHHHHHHCSSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEC---TTSCEEECTHH
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC---CCCCEeecHHH
Confidence            45788888754 8999999999999    999999999999999999984   56889999854

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.90  E-value=3.6e-06  Score=64.46  Aligned_cols=64  Identities=14%  Similarity=-0.009  Sum_probs=51.8

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcccCC--CCCC--CCEEEe
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFE--SVPE--GDAILM  261 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gD~f~--~~p~--~D~~~l  261 (273)
                      ...+|||+|||+|.++++.+.+-.. +++.+|. |.+++.+++       .++++++.+|.++  +.+.  .|++++
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga~-~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~   89 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGMS-AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFL   89 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTCC-EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCcc-eeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEe
Confidence            4689999999999999999998775 8999998 777776543       2789999999877  3333  399887

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=1.4e-05  Score=68.73  Aligned_cols=89  Identities=16%  Similarity=0.240  Sum_probs=65.8

Q ss_pred             HHHHHHHhcchh----hHHHHHhhcccCCCcceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhCCC-------
Q 024046          172 TYHEAMFNHSTI----AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPS-------  238 (273)
Q Consensus       172 ~f~~am~~~~~~----~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~~~Dl-p~v~~~a~~-------  238 (273)
                      .|...|...++.    .+..|+..++ ..+..+|||+|||+|.++..|++. .|+-+++.+|. |+.++.|++       
T Consensus        70 d~~~~~~r~tqiiypkD~~~Il~~l~-i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~  148 (324)
T d2b25a1          70 DYVVLMKRGTAITFPKDINMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRD  148 (324)
T ss_dssp             HHHHHSCCSSCCCCHHHHHHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             HHhhccCCCCcccccccHHHHHHHhC-CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhh
Confidence            355556555553    2445777777 889999999999999999999987 68999999998 777776643       


Q ss_pred             ----------CCCceEEEcccCC---CCCCC--CEEEe
Q 024046          239 ----------YAGVEHVGGNMFE---SVPEG--DAILM  261 (273)
Q Consensus       239 ----------~~ri~~~~gD~f~---~~p~~--D~~~l  261 (273)
                                .+++++..+|+-.   .++..  |++++
T Consensus       149 ~~~~~~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~L  186 (324)
T d2b25a1         149 SWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVAL  186 (324)
T ss_dssp             HHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEE
T ss_pred             hhhhhhhhccccceeEEecchhhcccccCCCCcceEee
Confidence                      1689999999876   24443  88876

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=97.88  E-value=5.9e-06  Score=69.36  Aligned_cols=65  Identities=20%  Similarity=0.299  Sum_probs=54.0

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCCC--C--CEEEec
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE--G--DAILMK  262 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p~--~--D~~~l~  262 (273)
                      +..+++|+|||+|..+..++ ++|+.+++..|. |..++.|+.+       +++.++.+|++.+.+.  +  |+++..
T Consensus       110 ~~~~vld~g~GsG~i~~~la-~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsN  186 (271)
T d1nv8a_         110 GIKTVADIGTGSGAIGVSVA-KFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSN  186 (271)
T ss_dssp             TCCEEEEESCTTSHHHHHHH-HHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEEC
T ss_pred             cccEEEEeeeeeehhhhhhh-hcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEc
Confidence            45789999999999999987 579999999998 8888877652       6899999999997652  2  988753

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.84  E-value=1.3e-05  Score=64.30  Aligned_cols=64  Identities=16%  Similarity=0.142  Sum_probs=49.9

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcccCCCCCC-CCEEEe
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPE-GDAILM  261 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~ri~~~~gD~f~~~p~-~D~~~l  261 (273)
                      ++ ..+|||+|||+|.+++.++.+.+ .+++++|. |..++.++.+     .+++++.+|... ++. .|+|++
T Consensus        45 l~-g~~vLDlg~GtG~l~i~a~~~g~-~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~-~~~~fD~Vi~  115 (201)
T d1wy7a1          45 IE-GKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE-FNSRVDIVIM  115 (201)
T ss_dssp             ST-TCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGG-CCCCCSEEEE
T ss_pred             CC-CCEEEECcCcchHHHHHHHHcCC-CEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhh-hCCcCcEEEE
Confidence            44 47999999999999999887654 58999998 7777766542     578899999876 444 498875

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.83  E-value=1.2e-05  Score=65.05  Aligned_cols=81  Identities=20%  Similarity=0.274  Sum_probs=63.5

Q ss_pred             HHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC------CCCceEEEcccCCCCCC-C--
Q 024046          187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFESVPE-G--  256 (273)
Q Consensus       187 ~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gD~f~~~p~-~--  256 (273)
                      .++..++ .++..+|||||||+|..+..+++... .+++.+|. |++++.|+.      .++++++.||.+.-.|. +  
T Consensus        69 ~ml~~L~-l~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pf  146 (215)
T d1jg1a_          69 IMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPY  146 (215)
T ss_dssp             HHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred             HHHHhhc-cCccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCcc
Confidence            4566666 88889999999999999998887653 45778887 788877764      28999999999986563 3  


Q ss_pred             CEEEecccccccC
Q 024046          257 DAILMKVGNFENY  269 (273)
Q Consensus       257 D~~~l~~vLHd~~  269 (273)
                      |+|++.-.+...+
T Consensus       147 D~Iiv~~a~~~ip  159 (215)
T d1jg1a_         147 DVIIVTAGAPKIP  159 (215)
T ss_dssp             EEEEECSBBSSCC
T ss_pred             eeEEeecccccCC
Confidence            9999887776543

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=9.6e-06  Score=67.27  Aligned_cols=56  Identities=11%  Similarity=0.081  Sum_probs=47.6

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCC
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE  251 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~  251 (273)
                      +...+++|||+|+|..+..|++++|++++++.|. |..++.|+.+       +|+.++..+...
T Consensus        60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~  123 (250)
T d2h00a1          60 STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKT  123 (250)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTC
T ss_pred             cccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHH
Confidence            3457999999999999999999999999999998 8888887652       789988765543

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.78  E-value=2.7e-05  Score=63.34  Aligned_cols=83  Identities=18%  Similarity=0.221  Sum_probs=63.6

Q ss_pred             HHHhhcc-cCCCcceEEEecCCccHHHHHHHHH------CCCCeEEEeec-hHHHHhCCCC-----------CCceEEEc
Q 024046          187 RILEHYE-GFQNVERLVDVGGGFGVTLSMITSK------YPQIKAVNFDL-PHVVQDAPSY-----------AGVEHVGG  247 (273)
Q Consensus       187 ~il~~~~-~~~~~~~vvDVGGG~G~~~~~l~~~------~P~l~~~~~Dl-p~v~~~a~~~-----------~ri~~~~g  247 (273)
                      .++..+. ++.+..+|||||||+|..+..+++.      ++..+++.+|. ++.++.|+++           .+|+++.+
T Consensus        69 ~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~  148 (223)
T d1r18a_          69 FALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG  148 (223)
T ss_dssp             HHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES
T ss_pred             HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEec
Confidence            3455541 2778899999999999998877775      56778999997 7777766532           68999999


Q ss_pred             ccCCCCC-CC--CEEEecccccccC
Q 024046          248 NMFESVP-EG--DAILMKVGNFENY  269 (273)
Q Consensus       248 D~f~~~p-~~--D~~~l~~vLHd~~  269 (273)
                      |..+-.| .+  |.|++.-.+.+.+
T Consensus       149 d~~~~~~~~~~fD~Iiv~~a~~~~p  173 (223)
T d1r18a_         149 DGRKGYPPNAPYNAIHVGAAAPDTP  173 (223)
T ss_dssp             CGGGCCGGGCSEEEEEECSCBSSCC
T ss_pred             ccccccccccceeeEEEEeechhch
Confidence            9998554 33  9999988877654

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.72  E-value=1.5e-05  Score=66.42  Aligned_cols=67  Identities=19%  Similarity=0.115  Sum_probs=54.3

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCCC--CCEEEec
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE--GDAILMK  262 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p~--~D~~~l~  262 (273)
                      ..+..+|||+|||+|.+++.++++ +..+++.+|+ |..++.++.+       ++|+++.||.++-.++  .|.|+|.
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~  181 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMG  181 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEEC
T ss_pred             cCCccEEEECcceEcHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEEC
Confidence            457799999999999999999987 4578999998 8887776542       7899999999874444  3887764

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=97.68  E-value=5.1e-05  Score=62.15  Aligned_cols=77  Identities=6%  Similarity=0.245  Sum_probs=59.5

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCC----CCCCceEEEcccCC-CCCCC-C
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP----SYAGVEHVGGNMFE-SVPEG-D  257 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~----~~~ri~~~~gD~f~-~~p~~-D  257 (273)
                      +..+++..+ .....+||+||+|.|.+...|++...  +++++|. +..++..+    ..++++++.||+++ ++|+. .
T Consensus        10 ~~~iv~~~~-~~~~d~VlEIGpG~G~LT~~Ll~~~~--~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~~   86 (235)
T d1qama_          10 IDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRCN--FVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQS   86 (235)
T ss_dssp             HHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHSS--EEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCC
T ss_pred             HHHHHHhcC-CCCCCeEEEECCCchHHHHHHHhCcC--ceEEEeeccchHHHHHHHhhcccchhhhhhhhhhcccccccc
Confidence            466777776 77889999999999999999999854  5788887 55555443    35899999999998 67765 5


Q ss_pred             EEEeccc
Q 024046          258 AILMKVG  264 (273)
Q Consensus       258 ~~~l~~v  264 (273)
                      ..++.|+
T Consensus        87 ~~vv~NL   93 (235)
T d1qama_          87 YKIFGNI   93 (235)
T ss_dssp             CEEEEEC
T ss_pred             ceeeeee
Confidence            5555554

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=97.60  E-value=2e-05  Score=65.08  Aligned_cols=81  Identities=10%  Similarity=0.271  Sum_probs=62.2

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----CCCceEEEcccCC-CCCCC-C
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE-SVPEG-D  257 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~ri~~~~gD~f~-~~p~~-D  257 (273)
                      +..+++..+ ..+..+||+||+|.|.++..|++..+  +.+++|. +..++.++.    .++++++.+|+.+ ++|.. +
T Consensus        18 i~kIv~~~~-~~~~d~VLEIGpG~G~LT~~L~~~~~--~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~~   94 (245)
T d1yuba_          18 LNQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKISK--QVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQR   94 (245)
T ss_dssp             HHHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHSS--EEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSE
T ss_pred             HHHHHHhcC-CCCCCeEEEECCCccHHHHHHHhhcC--ceeEeeecccchhhhhhhhhhccchhhhhhhhhcccccccee
Confidence            456777776 77889999999999999999999854  5788888 555555553    2789999999998 77754 6


Q ss_pred             EEEeccccccc
Q 024046          258 AILMKVGNFEN  268 (273)
Q Consensus       258 ~~~l~~vLHd~  268 (273)
                      ..++.+.=++.
T Consensus        95 ~~vv~NLPY~I  105 (245)
T d1yuba_          95 YKIVGNIPYHL  105 (245)
T ss_dssp             EEEEEECCSSS
T ss_pred             eeEeeeeehhh
Confidence            66667664443

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=97.51  E-value=2.6e-05  Score=66.70  Aligned_cols=67  Identities=25%  Similarity=0.271  Sum_probs=56.4

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC-----------CCCceEEEcccCC---CCCCC-CE
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFE---SVPEG-DA  258 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----------~~ri~~~~gD~f~---~~p~~-D~  258 (273)
                      -+++++||.||||.|..+..+++..|..+.+++|+ |.|++.+++           .+|++++.+|.++   ..+.. |+
T Consensus        75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv  154 (312)
T d1uira_          75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV  154 (312)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred             CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccE
Confidence            35789999999999999999999989899999999 899887653           3799999999987   23333 99


Q ss_pred             EEe
Q 024046          259 ILM  261 (273)
Q Consensus       259 ~~l  261 (273)
                      |++
T Consensus       155 Ii~  157 (312)
T d1uira_         155 VII  157 (312)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            884

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.36  E-value=0.0002  Score=58.16  Aligned_cols=57  Identities=14%  Similarity=0.190  Sum_probs=48.0

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhCCC----CCCceEEEcccCC
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE  251 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~----~~ri~~~~gD~f~  251 (273)
                      +++..+|||+|||+|..+..|++.. |+-+++.+|. |.+++.+..    .+.+..+.+|.-.
T Consensus        71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~  133 (227)
T d1g8aa_          71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATK  133 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTC
T ss_pred             cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCC
Confidence            6678999999999999999999986 8889999998 777776643    4678888888765

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=6.5e-05  Score=63.26  Aligned_cols=68  Identities=21%  Similarity=0.304  Sum_probs=56.9

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcccCC---CCCCC-CEE
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFE---SVPEG-DAI  259 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------~~ri~~~~gD~f~---~~p~~-D~~  259 (273)
                      -+.+++||-||||.|..+..+++..|..+++++|+ |.|++.|+.          .+|++++.+|.++   ..++. |+|
T Consensus        76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (285)
T d2o07a1          76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI  155 (285)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred             CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEE
Confidence            35779999999999999999998888889999999 999988864          3899999999887   23334 888


Q ss_pred             Eec
Q 024046          260 LMK  262 (273)
Q Consensus       260 ~l~  262 (273)
                      ++-
T Consensus       156 i~D  158 (285)
T d2o07a1         156 ITD  158 (285)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            763

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=97.34  E-value=8.1e-05  Score=62.31  Aligned_cols=68  Identities=24%  Similarity=0.264  Sum_probs=56.3

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcccCC--CC-CCC-CEE
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFE--SV-PEG-DAI  259 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------~~ri~~~~gD~f~--~~-p~~-D~~  259 (273)
                      -+.+++||-||||.|..+..+++..|..+.+++|+ |+|++.|+.          .+|++++.+|.+.  .. +.. |+|
T Consensus        73 ~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvI  152 (274)
T d1iy9a_          73 HPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI  152 (274)
T ss_dssp             SSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred             cCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEE
Confidence            35779999999999999999999888889999999 999887754          3899999999887  22 333 888


Q ss_pred             Eec
Q 024046          260 LMK  262 (273)
Q Consensus       260 ~l~  262 (273)
                      ++-
T Consensus       153 i~D  155 (274)
T d1iy9a_         153 MVD  155 (274)
T ss_dssp             EES
T ss_pred             EEc
Confidence            754

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.33  E-value=6.7e-05  Score=63.44  Aligned_cols=66  Identities=26%  Similarity=0.272  Sum_probs=55.9

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcccCCC---CCCC-CEEE
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFES---VPEG-DAIL  260 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------~~ri~~~~gD~f~~---~p~~-D~~~  260 (273)
                      +.+++||-||||.|..+..+++..|..+++++|+ |.|++.++.          ++|++++.+|.++-   .+.. |+|+
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  167 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  167 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence            5689999999999999999999888889999999 999987764          38999999999872   2333 9888


Q ss_pred             e
Q 024046          261 M  261 (273)
Q Consensus       261 l  261 (273)
                      +
T Consensus       168 ~  168 (295)
T d1inla_         168 I  168 (295)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=2.4e-05  Score=64.18  Aligned_cols=43  Identities=12%  Similarity=0.080  Sum_probs=33.3

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS  238 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~  238 (273)
                      ..+..+|||||||+|.++..+++... -+++++|+ |.+++.|++
T Consensus        49 ~~~g~~vLDlGcG~G~~~~~~~~~~~-~~v~giD~S~~~i~~a~~   92 (257)
T d2a14a1          49 GLQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEK   92 (257)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCHhHHHHhcccc-CcEEEecCCHHHHHHHHH
Confidence            34578999999999998877766543 26899998 788877653

>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Hypothetical protein PH1061
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.27  E-value=8.9e-05  Score=52.18  Aligned_cols=70  Identities=13%  Similarity=0.171  Sum_probs=56.2

Q ss_pred             HHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           40 ATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        40 aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      .+..-.++.|+..|...|+.|+.|||+.+++    ++..+.+.|+.|...|+++......+   -.|++|+.++...
T Consensus        12 ~l~~p~r~~IL~~L~~~~~~~~~eLa~~l~i----s~~~vs~~l~~L~~~glV~~~~~~~d~r~~~~~LT~~G~~~~   84 (100)
T d1ub9a_          12 ILGNPVRLGIMIFLLPRRKAPFSQIQKVLDL----TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEA   84 (100)
T ss_dssp             HHHSHHHHHHHHHHHHHSEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHH
T ss_pred             hcCCHHHHHHHHHhccCCCeeHHHHHHHHhh----ccccccHHHHHHhhhceeEEEEcCcCCccccccCCHHHHHHH
Confidence            3445668889999977789999999999999    99999999999999999986421122   2599999886543

>d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ArsR-like transcriptional regulators
domain: SmtB repressor
species: Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]

Probab=97.26  E-value=0.00011  Score=51.78  Aligned_cols=65  Identities=18%  Similarity=0.291  Sum_probs=52.7

Q ss_pred             HHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecCh
Q 024046           38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP  107 (273)
Q Consensus        38 ~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~  107 (273)
                      +.+|.-..++.|+..|.. |+.++.|||+.+|+    +...+.+.|+.|...|++.....+..-.|++++
T Consensus        17 ~kaL~~p~Rl~Il~~L~~-~~~~v~ela~~l~i----s~stvS~HL~~L~~aglV~~~r~G~~~~Y~l~~   81 (98)
T d1r1ta_          17 FAVLADPNRLRLLSLLAR-SELCVGDLAQAIGV----SESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQD   81 (98)
T ss_dssp             HHHHCCHHHHHHHHHHTT-CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEESS
T ss_pred             HHHhCCHHHHHHHHHHHc-CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEEECCEEEEEECh
Confidence            357777889999999986 79999999999999    999999999999999999864211112466654

>d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ArsR-like transcriptional regulators
domain: Cadmium efflux system accessory protein CadC
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.24  E-value=0.00015  Score=51.86  Aligned_cols=67  Identities=21%  Similarity=0.197  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecCh
Q 024046           37 LPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP  107 (273)
Q Consensus        37 ~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~  107 (273)
                      .+.+|....++.|+..|...|+.++.|||+.+|+    ++..+.+.|+.|...|++.....+..-.|++++
T Consensus        24 ~~kaLadp~Rl~Il~~L~~~~~~~v~ela~~l~~----s~s~vS~HL~~L~~aGlv~~~r~G~~~~Y~l~~   90 (108)
T d1u2wa1          24 ILKAIADENRAKITYALCQDEELCVCDIANILGV----TIANASHHLRTLYKQGVVNFRKEGKLALYSLGD   90 (108)
T ss_dssp             HHHHHHSHHHHHHHHHHHHSSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC----CCEEEESC
T ss_pred             HHHHhCCHHHHHHHHHHHhCCCccHHHHHHHHcc----ChhHHHHHHHHHHHCCeeEEEEECCEEEEEECH
Confidence            4567888899999999976579999999999999    999999999999999999974211112466654

>d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ArsR-like transcriptional regulators
domain: Metal-sensing transcriptional repressor CzrA
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.22  E-value=0.00012  Score=51.15  Aligned_cols=65  Identities=22%  Similarity=0.302  Sum_probs=53.0

Q ss_pred             HHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecCh
Q 024046           38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP  107 (273)
Q Consensus        38 ~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~  107 (273)
                      +.+|.-..++.|+..|.. |+.++.||++.+|+    +...+.+.|+.|...|++.....+..-.|+++.
T Consensus        12 fkaL~d~~Rl~Il~~L~~-~~~~v~el~~~l~~----s~~~vS~HL~~L~~~glv~~~r~G~~~~Y~l~~   76 (94)
T d1r1ua_          12 FKALGDYNRIRIMELLSV-SEASVGHISHQLNL----SQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDD   76 (94)
T ss_dssp             HHHTCSHHHHHHHHHHHH-CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEESS
T ss_pred             HHHhCCHHHHHHHHHHHc-CCccHHHHHHHHCC----CHHHHHHHHHHHHHCCceEEEEECCEEEEEECc
Confidence            456777789999999987 89999999999999    999999999999999999874211112476664

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.21  E-value=0.00012  Score=61.80  Aligned_cols=66  Identities=21%  Similarity=0.277  Sum_probs=56.0

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcccCC---CCCC-C-CEE
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFE---SVPE-G-DAI  259 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------~~ri~~~~gD~f~---~~p~-~-D~~  259 (273)
                      +++++||=||||.|..+.++++..|-.+.+++|+ |.|++.++.          .+|++++.+|-++   ..++ . |+|
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI  158 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  158 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence            5778999999999999999999888778999999 899888764          3899999999876   3444 3 988


Q ss_pred             Ee
Q 024046          260 LM  261 (273)
Q Consensus       260 ~l  261 (273)
                      ++
T Consensus       159 i~  160 (290)
T d1xj5a_         159 IV  160 (290)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.18  E-value=0.00015  Score=60.69  Aligned_cols=66  Identities=20%  Similarity=0.273  Sum_probs=53.2

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----------------CCCceEEEcccCCC--CCC
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------------YAGVEHVGGNMFES--VPE  255 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------------~~ri~~~~gD~f~~--~p~  255 (273)
                      -+++++||.||||.|..+..+++ +|..+.+++|+ |.|++.|+.                ++|++++.+|.+.-  ...
T Consensus        70 ~~~p~~vLiiG~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~  148 (276)
T d1mjfa_          70 HPKPKRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNR  148 (276)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCC
T ss_pred             CCCCceEEEecCCchHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccC
Confidence            35789999999999999999987 56678999998 999987752                37999999998862  223


Q ss_pred             C-CEEEe
Q 024046          256 G-DAILM  261 (273)
Q Consensus       256 ~-D~~~l  261 (273)
                      . |+|++
T Consensus       149 ~yDvIi~  155 (276)
T d1mjfa_         149 GFDVIIA  155 (276)
T ss_dssp             CEEEEEE
T ss_pred             CCCEEEE
Confidence            3 88875

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=97.14  E-value=0.00016  Score=56.69  Aligned_cols=63  Identities=16%  Similarity=0.128  Sum_probs=50.0

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC------CCCceEEEcccCCC--CC-C-CCEEEe
Q 024046          198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFES--VP-E-GDAILM  261 (273)
Q Consensus       198 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~ri~~~~gD~f~~--~p-~-~D~~~l  261 (273)
                      ..+|||++||+|.++.+.+.+... +++.+|. +.+++.+++      ...++++.+|.++-  .. . .|+|++
T Consensus        44 ~~~vLDlfaGsG~~giealsrGa~-~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~  117 (183)
T d2fpoa1          44 DAQCLDCFAGSGALGLEALSRYAA-GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFV  117 (183)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEE
T ss_pred             hhhhhhhhccccceeeeEEecCcc-eeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEE
Confidence            368999999999999999999876 7899998 777776554      26789999998872  22 2 298887

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.10  E-value=0.00012  Score=62.15  Aligned_cols=67  Identities=21%  Similarity=0.291  Sum_probs=55.4

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcccCC---CCCCC-CEE
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFE---SVPEG-DAI  259 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------~~ri~~~~gD~f~---~~p~~-D~~  259 (273)
                      -+.+++||-||||.|..+..+++..|-.+++++|+ |.|++.++.          ++|++++.+|.++   .-+.. |+|
T Consensus       104 ~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvI  183 (312)
T d2b2ca1         104 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI  183 (312)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred             CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEE
Confidence            35778999999999999999999888788999999 899887754          2899999999987   22333 888


Q ss_pred             Ee
Q 024046          260 LM  261 (273)
Q Consensus       260 ~l  261 (273)
                      ++
T Consensus       184 I~  185 (312)
T d2b2ca1         184 IT  185 (312)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.94  E-value=0.00022  Score=57.38  Aligned_cols=67  Identities=10%  Similarity=0.241  Sum_probs=53.6

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCCC-------CC--C
Q 024046          196 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVP-------EG--D  257 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~p-------~~--D  257 (273)
                      .++++||+||+|.|..+..++++.| +.+++.+|. |+.++.|+..       ++|+++.||..+-+|       .+  |
T Consensus        55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D  134 (214)
T d2cl5a1          55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD  134 (214)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEE
T ss_pred             hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccc
Confidence            4678999999999999999999976 578999998 7777776542       789999999976322       12  8


Q ss_pred             EEEec
Q 024046          258 AILMK  262 (273)
Q Consensus       258 ~~~l~  262 (273)
                      ++++-
T Consensus       135 ~ifiD  139 (214)
T d2cl5a1         135 MVFLD  139 (214)
T ss_dssp             EEEEC
T ss_pred             eeeec
Confidence            88775

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=96.90  E-value=0.00012  Score=56.70  Aligned_cols=65  Identities=22%  Similarity=0.152  Sum_probs=48.2

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCC---CC-C-CCEEEe
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---VP-E-GDAILM  261 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~---~p-~-~D~~~l  261 (273)
                      .....+|||+|||+|.++++++++.  .+++.+|. |.+++.++++       +++....+|.|.+   .+ + .|+|++
T Consensus        39 ~~~g~~vLDl~~G~G~~~i~a~~~g--a~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~  116 (171)
T d1ws6a1          39 YPRRGRFLDPFAGSGAVGLEAASEG--WEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFM  116 (171)
T ss_dssp             CTTCCEEEEETCSSCHHHHHHHHTT--CEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred             ccCCCeEEEeccccchhhhhhhhcc--chhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEE
Confidence            4567899999999999999988885  46888998 8888776542       5666666766542   22 2 388876

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.90  E-value=0.00022  Score=60.97  Aligned_cols=66  Identities=20%  Similarity=0.271  Sum_probs=52.6

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCC---CC---CC-CEE
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---VP---EG-DAI  259 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~---~p---~~-D~~  259 (273)
                      .++..+|||+|||+|.+++.+++..+. +++.+|+ |..++.++++       ++++++.+|.|+.   ++   .. |+|
T Consensus       143 ~~~g~~VLDl~~g~G~~si~~a~~ga~-~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~V  221 (324)
T d2as0a2         143 VQPGDRVLDVFTYTGGFAIHAAIAGAD-EVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIV  221 (324)
T ss_dssp             CCTTCEEEETTCTTTHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             cCCCCeeecccCcccchhhhhhhcCCc-EEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCch
Confidence            356789999999999999999988653 7999998 8888877642       6899999999862   22   22 888


Q ss_pred             Ee
Q 024046          260 LM  261 (273)
Q Consensus       260 ~l  261 (273)
                      ++
T Consensus       222 i~  223 (324)
T d2as0a2         222 VL  223 (324)
T ss_dssp             EE
T ss_pred             hc
Confidence            86

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00032  Score=57.95  Aligned_cols=42  Identities=17%  Similarity=0.075  Sum_probs=31.9

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCC
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP  237 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~  237 (273)
                      ..+..+|||||||+|.+....+.++.. ++++.|. |.+++.++
T Consensus        52 ~~~g~~vLDiGcG~g~~~~~~~~~~~~-~v~~~D~S~~~i~~~~   94 (263)
T d2g72a1          52 EVSGRTLIDIGSGPTVYQLLSACSHFE-DITMTDFLEVNRQELG   94 (263)
T ss_dssp             CSCCSEEEEETCTTCCGGGTTGGGGCS-EEEEECSCHHHHHHHH
T ss_pred             CCCCcEEEEeccCCCHHHHHHhcccCC-eEEEEeCCHHHHHHHH
Confidence            346789999999999887555545443 6899998 88888664

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.85  E-value=0.00087  Score=52.71  Aligned_cols=76  Identities=18%  Similarity=0.118  Sum_probs=53.2

Q ss_pred             CCcceEEEecCCccH----HHHHHHHHC----CCCeEEEeec-hHHHHhCCCC---------------------------
Q 024046          196 QNVERLVDVGGGFGV----TLSMITSKY----PQIKAVNFDL-PHVVQDAPSY---------------------------  239 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~----~~~~l~~~~----P~l~~~~~Dl-p~v~~~a~~~---------------------------  239 (273)
                      .+.-+|+++|||+|.    +++.+.+..    ++++.++.|+ +.+++.|+..                           
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~  102 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  102 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence            356799999999998    455555542    2456788898 7778766420                           


Q ss_pred             ----------CCceEEEcccCCCC--CC-C-CEEEecccccccCCC
Q 024046          240 ----------AGVEHVGGNMFESV--PE-G-DAILMKVGNFENYQS  271 (273)
Q Consensus       240 ----------~ri~~~~gD~f~~~--p~-~-D~~~l~~vLHd~~~~  271 (273)
                                .++.+...+...+.  |. . |+|+++|||+.++++
T Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~  148 (193)
T d1af7a2         103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKT  148 (193)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHH
T ss_pred             ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHH
Confidence                      33566777777632  23 3 999999999998764

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.78  E-value=0.00072  Score=52.76  Aligned_cols=64  Identities=13%  Similarity=0.004  Sum_probs=50.4

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcccCCCC------CC-CCEEEe
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESV------PE-GDAILM  261 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-------~ri~~~~gD~f~~~------p~-~D~~~l  261 (273)
                      ...+|||+.||+|.++.+.+.+-.. +++.+|. +.+++.++.+       ++++++.+|.++-+      .. .|+|++
T Consensus        41 ~~~~vLDlfaGsG~~g~ea~srGa~-~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIfl  119 (182)
T d2fhpa1          41 DGGMALDLYSGSGGLAIEAVSRGMD-KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL  119 (182)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCEEEEcccccccccceeeecchh-HHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEe
Confidence            5689999999999999999998764 6899998 7777766542       68999999987621      12 288886

>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ROK associated domain
domain: Transcriptional regulator VC2007 N-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=96.70  E-value=0.001  Score=43.54  Aligned_cols=45  Identities=18%  Similarity=0.385  Sum_probs=41.7

Q ss_pred             HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        46 elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      +..|+..|...|++|..|||+.+|+    ++..+.++++-|...|++.+
T Consensus         8 ~~~Il~~l~~~g~~sr~eLa~~~gl----S~~Tv~~~l~~L~~~Glv~e   52 (71)
T d1z05a1           8 AGRVYKLIDQKGPISRIDLSKESEL----APASITKITRELIDAHLIHE   52 (71)
T ss_dssp             HHHHHHHHHHHCSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHHHHcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE
Confidence            4468889998889999999999999    99999999999999999986

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.66  E-value=0.0015  Score=50.89  Aligned_cols=64  Identities=20%  Similarity=0.192  Sum_probs=53.3

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC--CCCceEEEcccCC
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS--YAGVEHVGGNMFE  251 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~--~~ri~~~~gD~f~  251 (273)
                      ..++++.+. ..+...+||..+|.|.++..+++++  .+++++|. |.+++.++.  .+|++++.++|-.
T Consensus         7 l~Evl~~l~-~~~g~~~vD~T~G~GGhs~~iL~~~--~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~   73 (182)
T d1wg8a2           7 YQEALDLLA-VRPGGVYVDATLGGAGHARGILERG--GRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRH   73 (182)
T ss_dssp             HHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHTCCTTEEEEESCGGG
T ss_pred             HHHHHHhcC-CCCCCEEEEeCCCCcHHHHHHhccc--CcEEEEhhhhhHHHHHhhccccceeEeehHHHH
Confidence            456777765 6677899999999999999999985  57899998 888887764  3899999998865

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=96.65  E-value=0.00098  Score=54.77  Aligned_cols=64  Identities=9%  Similarity=0.184  Sum_probs=50.6

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC----CCCceEEEcccCC
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE  251 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~ri~~~~gD~f~  251 (273)
                      +..+++..+ ..+...||+||+|.|.+...|+++..  +.+++|+ +..++..+.    .++++++.+|+.+
T Consensus        10 ~~~Iv~~~~-~~~~d~vlEIGpG~G~LT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~   78 (252)
T d1qyra_          10 IDSIVSAIN-PQKGQAMVEIGPGLAALTEPVGERLD--QLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMT   78 (252)
T ss_dssp             HHHHHHHHC-CCTTCCEEEECCTTTTTHHHHHTTCS--CEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGG
T ss_pred             HHHHHHhcC-CCCCCEEEEECCCchHHHHHHHccCC--ceEEEEeccchhHHHHHHhhhccchhHHhhhhhh
Confidence            456777766 67788999999999999999999865  5777887 555554433    3789999999987

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.0035  Score=52.05  Aligned_cols=71  Identities=20%  Similarity=0.374  Sum_probs=52.3

Q ss_pred             HHHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCC----C---CCCceEEEcccCC-CCCC
Q 024046          185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP----S---YAGVEHVGGNMFE-SVPE  255 (273)
Q Consensus       185 ~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~----~---~~ri~~~~gD~f~-~~p~  255 (273)
                      +..+++..+ .....+||+||+|.|.+...|+++.+  +.++++. +..++..+    .   .++++++.+|+++ ++|.
T Consensus        10 ~~kIv~~~~-~~~~d~VlEIGPG~G~LT~~Ll~~~~--~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~~   86 (278)
T d1zq9a1          10 INSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF   86 (278)
T ss_dssp             HHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC
T ss_pred             HHHHHHHhC-CCCCCEEEEECCCchHHHHHHHhcCC--cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhhh
Confidence            456677665 66778999999999999999999976  5677776 44333322    1   2689999999998 5665


Q ss_pred             CCE
Q 024046          256 GDA  258 (273)
Q Consensus       256 ~D~  258 (273)
                      .+.
T Consensus        87 ~~~   89 (278)
T d1zq9a1          87 FDT   89 (278)
T ss_dssp             CSE
T ss_pred             hhh
Confidence            443

>d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PF1790-like
domain: Transcriptional regulatory protein PF1790
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.44  E-value=0.0015  Score=51.37  Aligned_cols=68  Identities=13%  Similarity=0.185  Sum_probs=54.0

Q ss_pred             HHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccC-C----CcceecChhchH
Q 024046           39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG-G----ERLYALNPVSKY  111 (273)
Q Consensus        39 ~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~-~----~~~y~lt~~s~~  111 (273)
                      .+|..-.++.|+..|.. ||.|+.+||+.+|+    ++..+.+.|+.|...|+++..... .    ...|.+|..+..
T Consensus        10 ~~l~~~~R~~Il~~L~~-~~~~~~ela~~l~~----s~~~v~~HL~~L~~~Glv~~~~~~~~~G~~~~~y~l~~~~~~   82 (194)
T d2p4wa1          10 DVLGNETRRRILFLLTK-RPYFVSELSRELGV----GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLRL   82 (194)
T ss_dssp             HHHHSHHHHHHHHHHHH-SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEEE
T ss_pred             HHhCCHHHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeecCCCCceEEEEeccccee
Confidence            45556678889999987 89999999999999    999999999999999999853210 1    126888886643

>d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Hypothetical protein PH1932
domain: Hypothetical protein PH1932
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.44  E-value=0.0014  Score=51.15  Aligned_cols=68  Identities=10%  Similarity=0.196  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccC-C----CcceecChhc
Q 024046           37 LPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG-G----ERLYALNPVS  109 (273)
Q Consensus        37 ~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~-~----~~~y~lt~~s  109 (273)
                      ...+|..-.++.|+..|.. ||.|+.|||+.+|+    ++..+.+.|+.|...|+++..... .    ...|.+|+.+
T Consensus        12 ~~~~l~~p~R~~Il~~L~~-~~~s~~ela~~lg~----s~~~v~~hl~~L~~~glv~~~~~~~~~g~~~k~y~~~~~~   84 (190)
T d1ulya_          12 VIKVMLEDTRRKILKLLRN-KEMTISQLSEILGK----TPQTIYHHIEKLKEAGLVEVKRTEMKGNLVEKYYGRTADV   84 (190)
T ss_dssp             HHHHHHSHHHHHHHHHHTT-CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEEEEETTEEEEEEEESSSE
T ss_pred             HHHHhCCHHHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeeccCCcceEEEEEcccc
Confidence            4567778889999999976 89999999999999    999999999999999999743110 1    1247777643

>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Biotin repressor-like
domain: Biotin repressor, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.37  E-value=0.0021  Score=40.91  Aligned_cols=56  Identities=14%  Similarity=0.195  Sum_probs=44.7

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecC
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN  106 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt  106 (273)
                      .++.|+..|.+.+..|.+|||+.+|+    +.+.+.+-+..|...|+.-+.  ..+..|+++
T Consensus         6 ~~~~iL~~L~~~~~~s~~eLa~~l~v----S~~ti~r~i~~L~~~G~~I~~--~~g~GY~L~   61 (63)
T d1biaa1           6 VPLKLIALLANGEFHSGEQLGETLGM----SRAAINKHIQTLRDWGVDVFT--VPGKGYSLP   61 (63)
T ss_dssp             HHHHHHHHHTTSSCBCHHHHHHHHTS----CHHHHHHHHHHHHHTTCCCEE--ETTTEEECS
T ss_pred             HHHHHHHHHHHCCcCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCcEEE--eCCCeEEeC
Confidence            45678889987568999999999999    999999999999999984432  122347765

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.37  E-value=0.0013  Score=55.56  Aligned_cols=65  Identities=14%  Similarity=0.112  Sum_probs=51.5

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC--------CCceEEEcccCCCC------CC-CCE
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFESV------PE-GDA  258 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~--------~ri~~~~gD~f~~~------p~-~D~  258 (273)
                      ..+..+|||+.||+|.++..+++.-  .+++.+|. +..++.|+++        .+++++.+|.|+-+      .. .|+
T Consensus       130 ~~~~~rVLdlf~~tG~~sl~aa~~G--A~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~  207 (309)
T d2igta1         130 ADRPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDI  207 (309)
T ss_dssp             SSSCCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSE
T ss_pred             ccCCCeEEEecCCCcHHHHHHHhCC--CeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCE
Confidence            4567899999999999999998864  57999998 7777777642        47999999998722      12 299


Q ss_pred             EEe
Q 024046          259 ILM  261 (273)
Q Consensus       259 ~~l  261 (273)
                      |++
T Consensus       208 Iil  210 (309)
T d2igta1         208 ILT  210 (309)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            887

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=96.36  E-value=0.008  Score=47.57  Aligned_cols=68  Identities=21%  Similarity=0.242  Sum_probs=50.2

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeech----HHHHhCC---CCCCceEEEcccCCCCCC--CCEEEeccc
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLP----HVVQDAP---SYAGVEHVGGNMFESVPE--GDAILMKVG  264 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp----~v~~~a~---~~~ri~~~~gD~f~~~p~--~D~~~l~~v  264 (273)
                      ...+++|||+|.|.=++.++-.+|+++++++|.-    ..++.+.   ..++|+++.++..+-.+.  .|+++.+.+
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~V~sRA~  141 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF  141 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccccccceehhhhh
Confidence            3468999999999999999999999999999972    1222221   136899998888763332  488876644

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.36  E-value=0.0038  Score=49.23  Aligned_cols=73  Identities=16%  Similarity=0.170  Sum_probs=51.2

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHHHhCCCCCCceEEEcccCCCCC-CC-CEEEe
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQI-KAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVP-EG-DAILM  261 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l-~~~~~Dl-p~v~~~a~~~~ri~~~~gD~f~~~p-~~-D~~~l  261 (273)
                      ..+++... .+...+|+|.|||+|.++..+.++++.. +..++|+ |..+..   ..+.....+|++...+ .. |+++.
T Consensus         9 ~~m~~l~~-~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~---~~~~~~~~~~~~~~~~~~~fd~ii~   84 (223)
T d2ih2a1           9 DFMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL---PPWAEGILADFLLWEPGEAFDLILG   84 (223)
T ss_dssp             HHHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC---CTTEEEEESCGGGCCCSSCEEEEEE
T ss_pred             HHHHHhcC-CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh---cccceeeeeehhccccccccceecc
Confidence            33445554 5567899999999999999999887764 5899998 332222   2456788899988433 33 87765


Q ss_pred             c
Q 024046          262 K  262 (273)
Q Consensus       262 ~  262 (273)
                      .
T Consensus        85 n   85 (223)
T d2ih2a1          85 N   85 (223)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.33  E-value=0.003  Score=53.39  Aligned_cols=68  Identities=10%  Similarity=0.098  Sum_probs=51.9

Q ss_pred             CCCcceEEEecCCccHHHHHHHHH-----CCCCeEEEeec-hHHHHhCCC-----CCCceEEEcccCCCCCC--CCEEEe
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSK-----YPQIKAVNFDL-PHVVQDAPS-----YAGVEHVGGNMFESVPE--GDAILM  261 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~-----~P~l~~~~~Dl-p~v~~~a~~-----~~ri~~~~gD~f~~~p~--~D~~~l  261 (273)
                      .....+|+|.+||+|.++..+.++     .++.+.+++|+ |.++..|+.     ...+.+..+|.+...+.  .|+|+.
T Consensus       115 ~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~vi~  194 (328)
T d2f8la1         115 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVIS  194 (328)
T ss_dssp             TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEE
T ss_pred             CCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccccccccccccccc
Confidence            446689999999999999998764     45667899998 777766653     26778889999886553  398876


Q ss_pred             c
Q 024046          262 K  262 (273)
Q Consensus       262 ~  262 (273)
                      .
T Consensus       195 N  195 (328)
T d2f8la1         195 D  195 (328)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: TrmB-like
domain: Hypothetical protein AF2008
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.26  E-value=0.0022  Score=45.48  Aligned_cols=46  Identities=15%  Similarity=0.392  Sum_probs=40.6

Q ss_pred             HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        46 elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      +..++.+|...|+.|+.|||+.+|+    +...+.++|.-|...|++.+.
T Consensus        22 e~~v~~~L~~~g~~t~~eia~~~~i----~~~~v~~~l~~L~~~GlV~r~   67 (109)
T d1sfxa_          22 DVRIYSLLLERGGMRVSEIARELDL----SARFVRDRLKVLLKRGFVRRE   67 (109)
T ss_dssp             HHHHHHHHHHHCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHhCC----CcchHHHHHHHHHhCCCEEEE
Confidence            4446677777789999999999999    999999999999999999863

>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Putative transcriptional regulator YusO
species: Bacillus subtilis [TaxId: 1423]

Probab=96.23  E-value=0.011  Score=43.49  Aligned_cols=66  Identities=21%  Similarity=0.251  Sum_probs=52.6

Q ss_pred             HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCc---ceecChhchHhh
Q 024046           44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV  113 (273)
Q Consensus        44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~---~y~lt~~s~~l~  113 (273)
                      ..+..++..|...|+.|+.+||+.+++    ++..+.+++.-|+..|++++.....++   .+.+|+.+..+.
T Consensus        35 ~~q~~iL~~l~~~~~~t~~~la~~~~i----~~~~vs~~l~~L~~~glv~r~~~~~D~R~~~v~lT~~G~~~~  103 (143)
T d1s3ja_          35 PAQLFVLASLKKHGSLKVSEIAERMEV----KPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKF  103 (143)
T ss_dssp             HHHHHHHHHHHHHSEEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHhhhheeeeecCCCCceEEEECHHHHHHH
Confidence            345557778877789999999999999    999999999999999999864321222   488888887654

>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ROK associated domain
domain: Mlc protein N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.21  E-value=0.0031  Score=40.97  Aligned_cols=45  Identities=16%  Similarity=0.339  Sum_probs=41.9

Q ss_pred             HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        46 elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      +..|+..|...|+.|-.|||+.+|+    +...+.++++-|...|++.+
T Consensus         7 ~~~Il~~i~~~g~~sr~eLa~~~gL----S~~Tvs~iv~~L~~~glv~e   51 (70)
T d1z6ra1           7 AGAVYRLIDQLGPVSRIDLSRLAQL----APASITKIVHEMLEAHLVQE   51 (70)
T ss_dssp             HHHHHHHHHSSCSCCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEE
T ss_pred             HHHHHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEe
Confidence            3458899999899999999999999    99999999999999999986

>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator TM0710
species: Thermotoga maritima [TaxId: 2336]

Probab=96.17  E-value=0.0086  Score=43.91  Aligned_cols=66  Identities=12%  Similarity=0.154  Sum_probs=52.6

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCC---CcceecChhchHhhc
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGG---ERLYALNPVSKYFVS  114 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~---~~~y~lt~~s~~l~~  114 (273)
                      .+..++..|...|+.|+.+||+.+++    +...+.+++.-|...|+++......   .-.+.+|+.+..++.
T Consensus        31 ~q~~iL~~i~~~~~~t~~~la~~l~i----~~~tvs~~l~~L~~~gli~r~~~~~D~R~~~i~LT~~G~~~~~   99 (139)
T d2a61a1          31 AQFDILQKIYFEGPKRPGELSVLLGV----AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIE   99 (139)
T ss_dssp             HHHHHHHHHHHHCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHhCC----CcccchHHHHHHHhcCeeeeeeccCCCCeEEEEECHHHHHHHH
Confidence            34556677777789999999999999    9999999999999999998643212   236889998876653

>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Ta1064 (RFK), N-terminal domain
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=96.17  E-value=0.0016  Score=44.14  Aligned_cols=55  Identities=11%  Similarity=0.132  Sum_probs=44.2

Q ss_pred             hCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhh
Q 024046           55 KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV  113 (273)
Q Consensus        55 ~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~  113 (273)
                      +.+++|+.+||+.+++    ++..+.++|.-|...|++.+..-.+.-.+.+|+.+..+.
T Consensus        18 ~~~~lt~~eLa~~l~i----~~~~vs~~l~~Le~~GlV~r~~D~R~~~i~LT~~G~~~l   72 (85)
T d3ctaa1          18 NRAYLTSSKLADMLGI----SQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVL   72 (85)
T ss_dssp             SEEECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHH
T ss_pred             CCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeeecccccccceECHHHHHHH
Confidence            3358999999999999    999999999999999999974211223578898886544

>d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ROK associated domain
domain: N-acetylglucosamine kinase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.13  E-value=0.0028  Score=40.20  Aligned_cols=43  Identities=14%  Similarity=0.272  Sum_probs=39.7

Q ss_pred             ChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           48 GVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        48 glfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      .|+..|.+ ||+|-.|||+.+|+    +...+.++++-|...|++.+.
T Consensus         3 ~Il~~i~~-~pisr~eLa~~~gl----s~~TVs~~v~~L~~~GlV~e~   45 (62)
T d2hoea1           3 RILKRIMK-SPVSRVELAEELGL----TKTTVGEIAKIFLEKGIVVEE   45 (62)
T ss_dssp             CSHHHHHH-SCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHH-CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC
Confidence            47888987 79999999999999    999999999999999999873

>d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator Rrf2
domain: Hypothetical protein ywnA
species: Bacillus subtilis [TaxId: 1423]

Probab=96.10  E-value=0.0053  Score=44.63  Aligned_cols=52  Identities=21%  Similarity=0.319  Sum_probs=41.6

Q ss_pred             hHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecCh
Q 024046           50 FEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP  107 (273)
Q Consensus        50 fd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~  107 (273)
                      +-.|+..++.|.++||+.+++    ++..++++|+.|...|+++-..+ .+|.| ++.
T Consensus        10 L~~la~~~~~ss~~IA~~~~~----~~~~v~kIl~~L~~aglV~s~rG-~~GGy-Lar   61 (127)
T d1xd7a_          10 LSLISMDEKTSSEIIADSVNT----NPVVVRRMISLLKKADILTSRAG-VPGAS-LKK   61 (127)
T ss_dssp             HHHHHTCSCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECCSS-SSSCE-ESS
T ss_pred             HHHHhcCCCCCHHHHHHHhCc----CHHHHHHHHHHHHHhCcccccCC-CCCcc-ccC
Confidence            445555569999999999999    99999999999999999997543 33445 554

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=96.10  E-value=0.0012  Score=56.03  Aligned_cols=63  Identities=21%  Similarity=0.171  Sum_probs=49.6

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCC---CC---C-CCEEEe
Q 024046          197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES---VP---E-GDAILM  261 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~---~p---~-~D~~~l  261 (273)
                      ...+|||++||+|.+++.+++.  ..+++.+|. +..++.|+++      ++++++.+|.++.   ++   + .|+|++
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~  221 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL  221 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence            5689999999999999998865  346899998 7788877642      6799999999862   22   2 298886

>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: C-terminal fragment of elongation factor SelB
domain: C-terminal fragment of elongation factor SelB
species: Moorella thermoacetica [TaxId: 1525]

Probab=96.06  E-value=0.0053  Score=39.11  Aligned_cols=50  Identities=22%  Similarity=0.262  Sum_probs=41.9

Q ss_pred             ChhHHHHhCC--CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCccee
Q 024046           48 GVFEIIAKAG--ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYA  104 (273)
Q Consensus        48 glfd~L~~~g--~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~  104 (273)
                      .|.+++.+.|  |-++.|||+.+|+    ++..++.+|+.|...|.+.+.   .++.|-
T Consensus        11 ~I~~~~~~~g~~PP~vrdl~~~l~~----~e~~~~~lL~~l~~~G~lvkI---~~d~yf   62 (64)
T d1lvaa3          11 DLEDKYRVSRWQPPSFKEVAGSFNL----DPSELEELLHYLVREGVLVKI---NDEFYW   62 (64)
T ss_dssp             HHHHHHHHHTTSCCBHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEES---SSSBEE
T ss_pred             HHHHHHHHcCCCCCcHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe---cccccc
Confidence            4555666655  9999999999999    999999999999999999985   556553

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.0034  Score=50.27  Aligned_cols=57  Identities=11%  Similarity=0.117  Sum_probs=48.4

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCC-------CCCceEEEcccCC
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFE  251 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gD~f~  251 (273)
                      ..++++||+||+|+|..+..+++.-| +.+.+.+|. |...+.|+.       .++|+++.||..+
T Consensus        57 ~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e  122 (219)
T d2avda1          57 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALE  122 (219)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred             ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhh
Confidence            45789999999999999999999987 678899997 776666654       2899999999876

>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: MexR repressor
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.88  E-value=0.018  Score=42.20  Aligned_cols=67  Identities=12%  Similarity=0.156  Sum_probs=52.1

Q ss_pred             HHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           43 AAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        43 ~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      +..+..++..|...++.|+.+||+.+++    +...+.|+++.|+..|++++.....+   -.+.+|+.+..+.
T Consensus        35 t~~q~~vL~~l~~~~~~t~~~la~~l~~----~~~~vsr~l~~L~~~G~v~r~~~~~D~R~~~l~lT~~G~~~~  104 (141)
T d1lnwa_          35 TPPDVHVLKLIDEQRGLNLQDLGRQMCR----DKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIH  104 (141)
T ss_dssp             CHHHHHHHHHHHSSTTCBHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEECSSSSSSEEEEECHHHHHHH
T ss_pred             CHHHHHHHHHHHHCCCCCHHHHHHHHCc----cHhHHHHHHHHHHHhhceeeeccCCCCcchhhccCHHHHHHH
Confidence            3455667778877668999999999999    99999999999999999986432122   2467888776543

>d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator MgrA
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.85  E-value=0.0073  Score=44.18  Aligned_cols=66  Identities=12%  Similarity=0.117  Sum_probs=53.1

Q ss_pred             HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      ..+..++..|...++.|..+||+.+++    ++..+.++++-|+..|++++.....+   -...+|+.|..+.
T Consensus        34 ~~q~~vL~~i~~~~~~t~~~la~~l~~----~~~~~s~~l~~L~~~Gli~r~~~~~D~R~~~l~lT~~G~~~~  102 (136)
T d2bv6a1          34 YPQFLVLTILWDESPVNVKKVVTELAL----DTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIR  102 (136)
T ss_dssp             HHHHHHHHHHHHSSEEEHHHHHHHTTC----CTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEEeecCCcccchhhccCHHHHHHH
Confidence            345567778877789999999999999    99999999999999999987533222   2578898887654

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=95.82  E-value=0.012  Score=45.42  Aligned_cols=64  Identities=17%  Similarity=0.264  Sum_probs=49.2

Q ss_pred             hHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHC-CCCeEEEeechHHHHhCCCCCCceEEEcccCC
Q 024046          184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFE  251 (273)
Q Consensus       184 ~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dlp~v~~~a~~~~ri~~~~gD~f~  251 (273)
                      ..-+|.+.|..+++..+||||||+.|.++..+.+.. +.-+++.+|+-.    ....+.+.++.||+..
T Consensus         9 KL~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~----~~~i~~~~~~~~d~~~   73 (180)
T d1ej0a_           9 KLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP----MDPIVGVDFLQGDFRD   73 (180)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC----CCCCTTEEEEESCTTS
T ss_pred             HHHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccc----ccccCCceEeeccccc
Confidence            344566777767788899999999999999888764 446789999733    2345788999999976

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=95.80  E-value=0.0017  Score=52.36  Aligned_cols=68  Identities=15%  Similarity=0.167  Sum_probs=53.9

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhCCC-------CCCceEEEcccCCCC---------CC-
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFESV---------PE-  255 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~-------~~ri~~~~gD~f~~~---------p~-  255 (273)
                      ..++++||+||++.|.-+..+++..| +.+.+.+|. |+.++.|++       .++|+++.||..+-+         .. 
T Consensus        57 ~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~  136 (227)
T d1susa1          57 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS  136 (227)
T ss_dssp             HHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTC
T ss_pred             hcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCc
Confidence            44789999999999999999999988 578899997 776766654       278999999997621         12 


Q ss_pred             CCEEEec
Q 024046          256 GDAILMK  262 (273)
Q Consensus       256 ~D~~~l~  262 (273)
                      -|++|+-
T Consensus       137 fD~iFiD  143 (227)
T d1susa1         137 YDFIFVD  143 (227)
T ss_dssp             BSEEEEC
T ss_pred             eeEEEec
Confidence            2888874

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=95.77  E-value=0.0073  Score=51.53  Aligned_cols=71  Identities=24%  Similarity=0.358  Sum_probs=53.7

Q ss_pred             HHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC------CCceEEEcccCCCCC------
Q 024046          188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP------  254 (273)
Q Consensus       188 il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~ri~~~~gD~f~~~p------  254 (273)
                      +++..+ ..+..+|+|+-||.|.++..|+++..  +++++|. ++.++.|+.+      .+++|+.+|..+.++      
T Consensus       204 v~~~~~-~~~~~~vlDLycG~G~fsl~La~~~~--~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~  280 (358)
T d1uwva2         204 ALEWLD-VQPEDRVLDLFCGMGNFTLPLATQAA--SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAK  280 (358)
T ss_dssp             HHHHHT-CCTTCEEEEESCTTTTTHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGT
T ss_pred             HHHhhc-cCCCceEEEecccccccchhcccccc--EEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhh
Confidence            344444 56778999999999999999998764  5899997 7777777642      789999999887332      


Q ss_pred             CC-CEEEe
Q 024046          255 EG-DAILM  261 (273)
Q Consensus       255 ~~-D~~~l  261 (273)
                      .. |++++
T Consensus       281 ~~~d~vil  288 (358)
T d1uwva2         281 NGFDKVLL  288 (358)
T ss_dssp             TCCSEEEE
T ss_pred             ccCceEEe
Confidence            12 87765

>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Putative transcriptional regulator TM0816
species: Thermotoga maritima [TaxId: 2336]

Probab=95.77  E-value=0.006  Score=44.83  Aligned_cols=66  Identities=17%  Similarity=0.111  Sum_probs=53.6

Q ss_pred             HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        44 a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      ..+..++..|...|+.|+.+||+.+++    +...+.++++-|...|++++.....+   -...+|+.+..++
T Consensus        32 ~~q~~iL~~l~~~~~~t~~~La~~l~i----~~~~vs~~v~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~  100 (140)
T d2etha1          32 TTELYAFLYVALFGPKKMKEIAEFLST----TKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIF  100 (140)
T ss_dssp             HHHHHHHHHHHHHCCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeeeecccccchhhhhcCHHHHHHH
Confidence            355667888888789999999999999    99999999999999999996432122   3688888887654

>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Biotin repressor-like
domain: Putative transcriptional regulator TM1602, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.74  E-value=0.0089  Score=38.06  Aligned_cols=58  Identities=16%  Similarity=0.220  Sum_probs=45.7

Q ss_pred             HHHHHhChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCc-eeccccCCCcceecCh
Q 024046           42 QAAIQLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRV-LECSVSGGERLYALNP  107 (273)
Q Consensus        42 ~~a~elglfd~L~~~-g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gl-l~~~~~~~~~~y~lt~  107 (273)
                      +.--...|++.|.+. ++.|+.+||+.+++    +.+-++|-+..|...|+ +..    ..+.|.+.+
T Consensus         5 k~eR~~~Il~~L~~~~~~vs~~~La~~l~V----S~~TI~rdi~~L~~~G~~I~~----~~gGY~L~~   64 (65)
T d1j5ya1           5 RQERLKSIVRILERSKEPVSGAQLAEELSV----SRQVIVQDIAYLRSLGYNIVA----TPRGYVLAG   64 (65)
T ss_dssp             HHHHHHHHHHHHHHCSSCBCHHHHHHHHTS----CHHHHHHHHHHHHHHTCCCEE----ETTEEECCT
T ss_pred             HHHHHHHHHHHHHHcCCCCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEE----eCCCEEeCC
Confidence            334456788888764 47999999999999    99999999999999997 543    335687754

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=95.48  E-value=0.0051  Score=52.04  Aligned_cols=66  Identities=11%  Similarity=-0.002  Sum_probs=49.5

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCCC--------CCceEEEcccCCCC------CCC-CE
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFESV------PEG-DA  258 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~--------~ri~~~~gD~f~~~------p~~-D~  258 (273)
                      +....+|||+.||+|.+++..++.-. -+++.+|+ +..++.++.+        ++++++.+|.|.-+      ... |+
T Consensus       142 ~~~g~~VLdlf~~~G~~sl~aa~~ga-~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~  220 (317)
T d2b78a2         142 SAAGKTVLNLFSYTAAFSVAAAMGGA-MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI  220 (317)
T ss_dssp             TTBTCEEEEETCTTTHHHHHHHHTTB-SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             hhCCCceeecCCCCcHHHHHHHhCCC-ceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCE
Confidence            45678999999999999988776533 45899998 6667665531        57999999998722      222 88


Q ss_pred             EEe
Q 024046          259 ILM  261 (273)
Q Consensus       259 ~~l  261 (273)
                      |++
T Consensus       221 Ii~  223 (317)
T d2b78a2         221 III  223 (317)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            886

>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: LprA
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.35  E-value=0.0077  Score=37.77  Aligned_cols=46  Identities=20%  Similarity=0.262  Sum_probs=41.8

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      .+..|..+|...+..|+.+||+.+|+    ++..+.+-++-|...|++..
T Consensus         4 ~D~kIl~~L~~n~r~s~~~lA~~~gl----s~~~v~~Ri~~L~~~giI~~   49 (60)
T d1i1ga1           4 RDKIILEILEKDARTPFTEIAKKLGI----SETAVRKRVKALEEKGIIEG   49 (60)
T ss_dssp             HHHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSSCC
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEe
Confidence            35668889998889999999999999    99999999999999999974

>d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Archaeal DNA-binding protein
domain: Sso10a (SSO10449)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.33  E-value=0.013  Score=39.93  Aligned_cols=57  Identities=11%  Similarity=0.206  Sum_probs=47.7

Q ss_pred             ChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhhc
Q 024046           48 GVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS  114 (273)
Q Consensus        48 glfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~~  114 (273)
                      +|++.+.+  +.+...|...+++    +.+.+...|..|...|+++.    .++.|.+|+.+..|+.
T Consensus        10 DIL~~~~~--g~~kT~i~~~aNL----s~~~~~kyl~~L~~~GLI~~----~~~~Y~iT~kG~~~L~   66 (90)
T d1r7ja_          10 AILEACKS--GSPKTRIMYGANL----SYALTGRYIKMLMDLEIIRQ----EGKQYMLTKKGEELLE   66 (90)
T ss_dssp             HHHHHHTT--CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE----ETTEEEECHHHHHHHH
T ss_pred             HHHHHHhC--CCCccHHHHHcCC----CHHHHHHHHHHHHHCCCeee----cCCEEEECccHHHHHH
Confidence            34455543  4678999999999    99999999999999999986    5689999999987763

>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: Transcriptional regulator LrpC
species: Bacillus subtilis [TaxId: 1423]

Probab=95.31  E-value=0.012  Score=37.16  Aligned_cols=46  Identities=24%  Similarity=0.393  Sum_probs=42.2

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      .+..|.+.|..++..|..+||+.+|+    ++..+.+-++-|...|++..
T Consensus         6 ~D~~IL~~L~~n~r~s~~~iA~~lgi----s~~tv~~Ri~~L~~~giI~~   51 (63)
T d2cfxa1           6 IDLNIIEELKKDSRLSMRELGRKIKL----SPPSVTERVRQLESFGIIKQ   51 (63)
T ss_dssp             HHHHHHHHHHHCSCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeee
Confidence            45678899998889999999999999    99999999999999999974

>d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Multiple antibiotic resistance repressor, MarR
species: Escherichia coli [TaxId: 562]

Probab=95.18  E-value=0.011  Score=43.27  Aligned_cols=65  Identities=23%  Similarity=0.154  Sum_probs=51.7

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      .+..++..|...++.|..+||+.+++    +...+.+++..|...|++++.....+   -.+.+|+.+..+.
T Consensus        35 ~q~~vL~~l~~~~~~t~~ela~~~~i----~~~~vs~~v~~L~~~glv~r~~~~~D~R~~~i~lT~~G~~~~  102 (138)
T d1jgsa_          35 AQFKVLCSIRCAACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAIC  102 (138)
T ss_dssp             HHHHHHHHHHHHSSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHH
T ss_pred             HHHHHHHhHHhCcCCCHHHHHHHHCC----CHhHHHHHHHHHhhCCCEEEeeccCCCCeeEEEECHHHHHHH
Confidence            44556667766679999999999999    99999999999999999986432222   2688898887654

>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: Putative transcriptional regulator PH1519
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.10  E-value=0.011  Score=36.98  Aligned_cols=46  Identities=20%  Similarity=0.253  Sum_probs=42.3

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      ++..|.+.|...+..|+.+||+.+|+    ++..+.+-++-|...|++..
T Consensus         4 ~D~~Il~~L~~n~r~s~~eiA~~l~l----s~~~v~~Ri~~L~~~giI~~   49 (60)
T d2cyya1           4 IDKKIIKILQNDGKAPLREISKITGL----AESTIHERIRKLRESGVIKK   49 (60)
T ss_dssp             HHHHHHHHHHHCTTCCHHHHHHHHCS----CHHHHHHHHHHHHHHTSSCC
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEe
Confidence            46678899999789999999999999    99999999999999999974

>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: Regulatory protein AsnC
species: Escherichia coli [TaxId: 562]

Probab=95.07  E-value=0.012  Score=37.18  Aligned_cols=46  Identities=13%  Similarity=0.268  Sum_probs=42.2

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      .+..|...|..++..|..+||+.+|+    ++..+.+=++-|...|++..
T Consensus         6 ~D~~IL~~L~~~~r~s~~eiA~~l~l----s~~~v~~Ri~rL~~~GiI~~   51 (63)
T d2cg4a1           6 LDRGILEALMGNARTAYAELAKQFGV----SPETIHVRVEKMKQAGIITG   51 (63)
T ss_dssp             HHHHHHHHHHHCTTSCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEe
Confidence            45668899999889999999999999    99999999999999999984

>d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Probable transcriptional regulator PA3067
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.01  E-value=0.021  Score=42.06  Aligned_cols=66  Identities=20%  Similarity=0.193  Sum_probs=51.0

Q ss_pred             HHHhChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccC---CCcceecChhchHhh
Q 024046           44 AIQLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFV  113 (273)
Q Consensus        44 a~elglfd~L~~~-g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~---~~~~y~lt~~s~~l~  113 (273)
                      ..++.++..|... |++|+.+||+.+++    +...+.++++-|...|++++....   +.-.+.+|+.+..+.
T Consensus        34 ~~q~~vL~~L~~~~g~~t~~~La~~~~~----~~~~vs~~i~~L~~~glv~r~~~~~DrR~~~i~LT~~G~~~~  103 (145)
T d2hr3a1          34 FSQLVVLGAIDRLGGDVTPSELAAAERM----RSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNL  103 (145)
T ss_dssp             HHHHHHHHHHHHTTSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHcCCeEeeeCccchhHHHhccCHHHHHHH
Confidence            3466677777644 58999999999999    999999999999999999864221   113688898887654

>d2hzta1 a.4.5.69 (A:4-98) Putative transcriptional regulator YtcD {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: HxlR-like
domain: Putative transcriptional regulator YtcD
species: Bacillus subtilis [TaxId: 1423]

Probab=94.98  E-value=0.016  Score=39.80  Aligned_cols=60  Identities=18%  Similarity=0.240  Sum_probs=46.8

Q ss_pred             hhHHHHhCCCCCHHHHHHHh-CcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           49 VFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        49 lfd~L~~~g~~t~~eLA~~~-g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      |+..|.. |+....||.+.+ |+    ++.-|.+=|+-|...|++++......   -.|++|+.+..|.
T Consensus        16 Il~~L~~-g~~rF~el~~~l~gi----s~~~Ls~rLk~Le~~glv~r~~~~~~p~~veY~LT~~G~~L~   79 (95)
T d2hzta1          16 ILCHLTH-GKKRTSELKRLMPNI----TQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLE   79 (95)
T ss_dssp             HHHHHTT-CCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGH
T ss_pred             HHHHHHc-CCCCHHHHHHHhhcC----ChhHHHHHHHHHHHhHHHhheeccccccchhhhhhhhHHHHH
Confidence            4445544 799999999997 89    99999999999999999997432111   2499999887664

>d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator Rrf2
domain: Hypothetical protein BC1842
species: Bacillus cereus [TaxId: 1396]

Probab=94.63  E-value=0.025  Score=41.38  Aligned_cols=44  Identities=11%  Similarity=0.169  Sum_probs=37.1

Q ss_pred             CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecCh
Q 024046           58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP  107 (273)
Q Consensus        58 ~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~  107 (273)
                      +.|.++||+.+++    ++..++++|..|...|+++-..  +.|.|.+..
T Consensus        23 ~vss~~IA~~~~i----~~~~l~kil~~L~~aGlv~S~r--G~GG~~L~~   66 (138)
T d1ylfa1          23 LCTSDYMAESVNT----NPVVIRKIMSYLKQAGFVYVNR--GPGGAGLLK   66 (138)
T ss_dssp             GCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC-----CCEEESS
T ss_pred             cCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEeec--CCCCceecC
Confidence            8999999999999    9999999999999999999764  336676653

>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator OEOE1854
species: Oenococcus oeni [TaxId: 1247]

Probab=94.58  E-value=0.022  Score=41.29  Aligned_cols=66  Identities=12%  Similarity=0.242  Sum_probs=50.7

Q ss_pred             HHHhChhHHHHhC--CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCC---CcceecChhchHhh
Q 024046           44 AIQLGVFEIIAKA--GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGG---ERLYALNPVSKYFV  113 (273)
Q Consensus        44 a~elglfd~L~~~--g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~---~~~y~lt~~s~~l~  113 (273)
                      ..++.++..|...  ++.|..|||+.+++    +...+.++++-|...|++.......   .-.+.+|+.+..+.
T Consensus        29 ~~q~~vL~~l~~~~~~~it~~ela~~~~~----~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~~~   99 (135)
T d3broa1          29 GTQMTIIDYLSRNKNKEVLQRDLESEFSI----KSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLE   99 (135)
T ss_dssp             HHHHHHHHHHHHTTTSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTH
T ss_pred             HHHHHHHHHHHHcCCCCCCHHHHHHHHCc----CHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccHHHHHHH
Confidence            4455566677764  36899999999999    9999999999999999998643211   22588898876544

>d2f2ea1 a.4.5.69 (A:5-146) Hypothetical protein PA1607 {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: HxlR-like
domain: Hypothetical protein PA1607
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.55  E-value=0.032  Score=41.25  Aligned_cols=57  Identities=23%  Similarity=0.197  Sum_probs=45.6

Q ss_pred             HHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC--cceecChhchHhh
Q 024046           52 IIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE--RLYALNPVSKYFV  113 (273)
Q Consensus        52 ~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~--~~y~lt~~s~~l~  113 (273)
                      .|.. |+..+.||.+.+|+    ++.-|.+-|+.|...|++++.....+  -.|.+|+.+..|.
T Consensus        28 ~l~~-G~~rf~el~~~lgi----s~~vLs~rL~~L~~~gLv~r~~~~~p~r~~Y~LT~~G~~L~   86 (142)
T d2f2ea1          28 DAFE-GLTRFGEFQKSLGL----AKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRALF   86 (142)
T ss_dssp             HHHT-TCCSHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHTTH
T ss_pred             HHHc-CCCCHHHHHHHhhc----cHHHHHHHHHHHHHhcceeeecCCCCCeeEEecCcCcchHH
Confidence            3444 89999999999999    99999999999999999987321122  3599999887664

>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator SlyA
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.53  E-value=0.022  Score=41.93  Aligned_cols=64  Identities=9%  Similarity=0.045  Sum_probs=49.7

Q ss_pred             HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCc---ceecChhchHhh
Q 024046           46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV  113 (273)
Q Consensus        46 elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~---~y~lt~~s~~l~  113 (273)
                      +..++..|...++.|..+||+.+++    ++..+.++++-|...|+++......+.   ...+|+.+..+.
T Consensus        31 q~~iL~~i~~~~~~t~~~la~~l~i----~~~tvs~~l~~L~~~glI~r~~~~~D~R~~~l~LT~~G~~~~   97 (144)
T d1lj9a_          31 QYLYLVRVCENPGIIQEKIAELIKV----DRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVY   97 (144)
T ss_dssp             HHHHHHHHHHSTTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHCc----cHhhHHHHHHHHHhhhcccccCCCCCCCccccccCHHHHHHH
Confidence            3345556777678999999999999    999999999999999999875322222   577888776554

>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Probable transcriptional regulator PA4135
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.36  E-value=0.016  Score=42.18  Aligned_cols=65  Identities=15%  Similarity=0.131  Sum_probs=51.5

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      .+..++..|...|+.|+.+||+.+++    +...+.++++-|...|++++.....+   -...+|+.+..+.
T Consensus        31 ~q~~vL~~l~~~~~~t~~~la~~~~i----~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~   98 (136)
T d2fbia1          31 QQWRVIRILRQQGEMESYQLANQACI----LRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCF   98 (136)
T ss_dssp             HHHHHHHHHHHHCSEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEeecCccCchhhhccCHHHHHHH
Confidence            34556777777789999999999999    99999999999999999986432122   2477888887654

>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: TrmB-like
domain: Hypothetical transcriptional regulator ST1889
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=94.36  E-value=0.018  Score=40.39  Aligned_cols=45  Identities=11%  Similarity=0.211  Sum_probs=37.6

Q ss_pred             hChhHHHH-hCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           47 LGVFEIIA-KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        47 lglfd~L~-~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      ..|+..|. ..||.|+.+||+.+|+    ++..+.++++-|...|++.+.
T Consensus        24 ~~iL~~L~~~~~~~t~~eLa~~~~i----~~~tvs~~l~~L~~~GlV~r~   69 (109)
T d2d1ha1          24 VAVLLKMVEIEKPITSEELADIFKL----SKTTVENSLKKLIELGLVVRT   69 (109)
T ss_dssp             HHHHHHHHHHCSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHCc----cHhHHHHHHHHHHHCCCEEEe
Confidence            33454443 3468999999999999    999999999999999999863

>d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Organic hydroperoxide resistance transcriptional regulator OhrR
species: Bacillus subtilis [TaxId: 1423]

Probab=94.32  E-value=0.012  Score=42.95  Aligned_cols=65  Identities=15%  Similarity=0.151  Sum_probs=50.9

Q ss_pred             HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhhc
Q 024046           46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFVS  114 (273)
Q Consensus        46 elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~~  114 (273)
                      +..++..|...++.|..+||+.+++    ++..+.+++.-|+..|++.+.....+   -...+|+.|..+..
T Consensus        35 q~~vL~~l~~~~~~t~~~La~~~~i----~~~~vsr~i~~L~~~glv~r~~~~~D~R~~~i~lT~~G~~~~~  102 (137)
T d1z91a1          35 QYLALLLLWEHETLTVKKMGEQLYL----DSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKE  102 (137)
T ss_dssp             HHHHHHHHHHHSEEEHHHHHHTTTC----CHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGG
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHCc----CHHHHHHHHHHHhhccceEEeecCCCCCeEEEEECHHHHHHHH
Confidence            3445667766679999999999999    99999999999999999997432122   24788998876653

>d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Iron-dependent repressor protein
domain: Manganese transport regulator MntR
species: Bacillus subtilis [TaxId: 1423]

Probab=94.10  E-value=0.034  Score=34.81  Aligned_cols=42  Identities=21%  Similarity=0.361  Sum_probs=36.7

Q ss_pred             hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        49 lfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      |+.+..+.|+.+..+||+.+|+    ++..+..+++-|...|+++.
T Consensus        12 I~~l~~~~~~v~~~~iA~~L~v----s~~SVs~mikrL~~~GlV~~   53 (61)
T d2ev0a1          12 IYMLIEEKGYARVSDIAEALAV----HPSSVTKMVQKLDKDEYLIY   53 (61)
T ss_dssp             HHHHHHHHSSCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC
T ss_pred             HHHHHhcCCCccHHHHHHHhCC----CchhHHHHHHHHHHCCCEEE
Confidence            3444445579999999999999    99999999999999999986

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=93.99  E-value=0.018  Score=46.50  Aligned_cols=70  Identities=19%  Similarity=0.288  Sum_probs=47.3

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechH----HHHhCC---CCCCceEEEcccCC-----CCCCC-CEEEe
Q 024046          195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPH----VVQDAP---SYAGVEHVGGNMFE-----SVPEG-DAILM  261 (273)
Q Consensus       195 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~----v~~~a~---~~~ri~~~~gD~f~-----~~p~~-D~~~l  261 (273)
                      +....+++|||.|.|.=++.|+=.+|+++++++|.-+    .++.+.   ..++++++.+..-.     +..+. |+++.
T Consensus        68 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~s  147 (239)
T d1xdza_          68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA  147 (239)
T ss_dssp             GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred             ccCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEE
Confidence            4456799999999999999999999999999999722    222211   13566666654422     22233 87776


Q ss_pred             ccc
Q 024046          262 KVG  264 (273)
Q Consensus       262 ~~v  264 (273)
                      +-+
T Consensus       148 RAv  150 (239)
T d1xdza_         148 RAV  150 (239)
T ss_dssp             ECC
T ss_pred             hhh
Confidence            543

>d1z7ua1 a.4.5.69 (A:1-108) Hypothetical protein EF0647 {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: HxlR-like
domain: Hypothetical protein EF0647
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.99  E-value=0.03  Score=39.33  Aligned_cols=77  Identities=16%  Similarity=0.117  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHh-CcCCCCCcchHHHHHHHHhcCCceeccccCC-C
Q 024046           23 ESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGG-E  100 (273)
Q Consensus        23 ~~~~~l~~~~~g~~~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~-g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~-~  100 (273)
                      -+....++++-+-|....         +..|.. |+....||.+.+ |+    ++.-|.+=|+.|...|++.+..... +
T Consensus         7 c~i~~al~iig~kW~~~I---------l~~L~~-g~~RF~el~~~l~gI----S~~~Ls~rLk~L~~~glv~R~~~~~~p   72 (108)
T d1z7ua1           7 TSINLALSTINGKWKLSL---------MDELFQ-GTKRNGELMRALDGI----TQRVLTDRLREMEKDGLVHRESFNELP   72 (108)
T ss_dssp             HHHHHHHHTTCSTTHHHH---------HHHHHH-SCBCHHHHHHHSTTC----CHHHHHHHHHHHHHHTSEEEEEECCSS
T ss_pred             CcHHHHHHHHcCCCHHHH---------HHHHHc-CCCCHHHHHHHCcCC----ChhHHHHHHHHHHHCCcceeeccCCCc
Confidence            344555555555565444         445555 799999999998 79    9999999999999999998742111 1


Q ss_pred             --cceecChhchHhh
Q 024046          101 --RLYALNPVSKYFV  113 (273)
Q Consensus       101 --~~y~lt~~s~~l~  113 (273)
                        -.|.+|+.+..|.
T Consensus        73 ~~veY~LT~~G~~L~   87 (108)
T d1z7ua1          73 PRVEYTLTPEGYALY   87 (108)
T ss_dssp             CEEEEEECHHHHHHH
T ss_pred             ceehhhhchhHHHHH
Confidence              1399999998765

>d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Iron-dependent repressor protein
domain: Iron-dependent regulator IdeR
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.94  E-value=0.069  Score=33.53  Aligned_cols=41  Identities=10%  Similarity=0.164  Sum_probs=35.5

Q ss_pred             hHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           50 FEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        50 fd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      +......++.+..+||+.+|+    ++..+.++++-|...|++..
T Consensus        15 ~~L~~~~~~v~~~~iA~~L~v----s~~SVt~mvkrL~~~Glv~~   55 (63)
T d2isya1          15 YDLEEEGVTPLRARIAERLDQ----SGPTVSQTVSRMERDGLLRV   55 (63)
T ss_dssp             HHHHHTTCCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred             HHHHhcCCCCcHHHHHHHhCC----CchhHHHHHHHHHHCCCEEE
Confidence            333344468999999999999    99999999999999999996

>d1xmka1 a.4.5.19 (A:294-366) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Z-DNA binding domain
domain: Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.93  E-value=0.042  Score=35.48  Aligned_cols=61  Identities=10%  Similarity=0.088  Sum_probs=50.0

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCc-chHHHHHHHHhcCCceeccccCCCcceecChhch
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAP-MMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK  110 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~-~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~  110 (273)
                      .+..|.+.|...||.|+-+||+.+|+    +. .-+.+.|.-|...|-+...+ ..+-.|.++....
T Consensus         6 ~eekI~~~L~~~g~~~Al~iak~lGl----~kakeVN~~LY~L~k~g~v~k~~-~tPP~W~L~~~~~   67 (73)
T d1xmka1           6 IKEKICDYLFNVSDSSALNLAKNIGL----TKARDINAVLIDMERQGDVYRQG-TTPPIWHLTDKKR   67 (73)
T ss_dssp             HHHHHHHHHHHTCCEEHHHHHHHHCG----GGHHHHHHHHHHHHHTTSEEEEC-SSSCEEEECHHHH
T ss_pred             HHHHHHHHHHHcCCchHHHHHHHhCC----CcHHHHhHHHHHHHHCCCeecCC-CCCCceeeecchh
Confidence            45678899999899999999999999    76 45999999999999999743 2345788887543

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.90  E-value=0.064  Score=44.99  Aligned_cols=54  Identities=9%  Similarity=0.194  Sum_probs=41.2

Q ss_pred             CcceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhCC---CCCCceEEEcccCC
Q 024046          197 NVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAP---SYAGVEHVGGNMFE  251 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~~~Dl-p~v~~~a~---~~~ri~~~~gD~f~  251 (273)
                      ...+|||||.|.|.++..|+++ .|. +.+++|. +...+..+   ..+|++++.+|++.
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~-~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~  101 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPR-QYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD  101 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCS-EEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCC-EEEEEECCHHHHHHHHHhccCCCcEEEeCchhh
Confidence            4578999999999999999987 453 6888887 33333322   24789999999984

>d1yyva1 a.4.5.69 (A:9-122) Putative transcriptional regulator YtfH {Salmonella typhimurium [TaxId: 90371]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: HxlR-like
domain: Putative transcriptional regulator YtfH
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.85  E-value=0.023  Score=40.39  Aligned_cols=75  Identities=12%  Similarity=0.113  Sum_probs=56.4

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHh-CcCCCCCcchHHHHHHHHhcCCceeccccC-CC--
Q 024046           25 YSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSG-GE--  100 (273)
Q Consensus        25 ~~~l~~~~~g~~~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~-g~~~~~~~~~l~rlL~~L~~~gll~~~~~~-~~--  100 (273)
                      ....++++.+-|....|.         .|.. |+....||.+.+ |+    ++.-|.+-|+.|...|++++.... .+  
T Consensus        14 v~~~l~~ig~kW~l~Il~---------~L~~-g~~RF~el~~~l~gi----s~~~Ls~rL~~Le~~glv~R~~~~~~p~~   79 (114)
T d1yyva1          14 SREVLKHVTSRWGVLILV---------ALRD-GTHRFSDLRRKMGGV----SEKMLAQSLQALEQDGFLNRVSYPVVPPH   79 (114)
T ss_dssp             HHHHHHHHHSHHHHHHHH---------HGGG-CCEEHHHHHHHSTTC----CHHHHHHHHHHHHHHTCEEEEEECSSSCE
T ss_pred             HHHHHHHHcCCCHHHHHH---------HHhc-CCCCHHHHHHHcccc----chhHHHHHHHHHHHHHHHhhcccCCCCch
Confidence            455666666666655443         4444 799999999999 78    999999999999999999975321 11  


Q ss_pred             cceecChhchHhh
Q 024046          101 RLYALNPVSKYFV  113 (273)
Q Consensus       101 ~~y~lt~~s~~l~  113 (273)
                      -.|.+|+.+..|.
T Consensus        80 veY~LT~~G~~L~   92 (114)
T d1yyva1          80 VEYSLTPLGEQVS   92 (114)
T ss_dssp             EEEEECHHHHHHH
T ss_pred             hHhHhhHhHHHHH
Confidence            2499999998775

>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator PA3341
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.66  E-value=0.051  Score=39.31  Aligned_cols=63  Identities=17%  Similarity=0.199  Sum_probs=47.5

Q ss_pred             hChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           47 LGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        47 lglfd~L~~~g-~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      ..++-.|...+ +.|+.+||+.+++    ++..+.++++-|+..|++++.....+   -...+|+.++.+.
T Consensus        31 ~~iL~~l~~~~~~~t~~~la~~~~~----~~~~vs~~v~~L~~~gli~r~~~~~D~R~~~i~lT~~G~~~~   97 (137)
T d2fbha1          31 WLVLLHLARHRDSPTQRELAQSVGV----EGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLI   97 (137)
T ss_dssp             HHHHHHHHHCSSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHH
T ss_pred             HHHHHHHHHcCCCCcHHHHHHHHCC----CHHHHHHHHHHHHHcCCccccCCCCCCCchhhhcCHHHHHHH
Confidence            33455565433 6899999999999    99999999999999999997432122   2577888776654

>d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator SlyA
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.65  E-value=0.033  Score=40.54  Aligned_cols=65  Identities=12%  Similarity=0.125  Sum_probs=48.7

Q ss_pred             HHhChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           45 IQLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        45 ~elglfd~L~~~g-~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      .+..++-.|...+ +.|..+||+.+++    +...+.++++-|...|+++......+   -.+.+|+.+..+.
T Consensus        32 ~~~~~L~~l~~~~~~~t~~~la~~l~i----~~~~vs~~l~~L~~~glI~~~~~~~D~R~~~l~lT~~G~~~~  100 (140)
T d3deua1          32 THWVTLHNIHQLPPDQSQIQLAKAIGI----EQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLI  100 (140)
T ss_dssp             HHHHHHHHHHHSCSSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHH
T ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHCC----CHhHHHHHHHHHHhCCCEEecccCCCCCceeeEECHHHHHHH
Confidence            3444666676534 6999999999999    99999999999999999986421111   2588898887655

>d2fswa1 a.4.5.69 (A:3-104) Hypothetical protein PG0823 {Porphyromonas gingivalis [TaxId: 837]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: HxlR-like
domain: Hypothetical protein PG0823
species: Porphyromonas gingivalis [TaxId: 837]

Probab=93.63  E-value=0.028  Score=39.05  Aligned_cols=76  Identities=16%  Similarity=0.172  Sum_probs=57.3

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHh-CcCCCCCcchHHHHHHHHhcCCceeccccC-CC-
Q 024046           24 SYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSG-GE-  100 (273)
Q Consensus        24 ~~~~l~~~~~g~~~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~-g~~~~~~~~~l~rlL~~L~~~gll~~~~~~-~~-  100 (273)
                      +....++++-+-|....|+         .|.. |+....||.+.+ |+    ++.-|.+=|+-|...|++++.... .+ 
T Consensus         9 pv~~~l~ilg~kW~l~Il~---------~L~~-g~~rF~el~~~l~gI----s~~~Ls~rLkeL~~~glv~r~~~~~~p~   74 (102)
T d2fswa1           9 PVRKSMQIFAGKWTLLIIF---------QINR-RIIRYGELKRAIPGI----SEKMLIDELKFLCGKGLIKKKQYPEVPP   74 (102)
T ss_dssp             HHHHHHHHHTSSSHHHHHH---------HHTT-SCEEHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEECSSSC
T ss_pred             CHHHHHHHHcCCCHHHHHH---------HHcc-CCCCHHHHHhhCccc----chhHHHHHHHHHHHCCceeecccCCCCC
Confidence            4666777777777665543         3444 799999999998 89    999999999999999999874211 11 


Q ss_pred             -cceecChhchHhh
Q 024046          101 -RLYALNPVSKYFV  113 (273)
Q Consensus       101 -~~y~lt~~s~~l~  113 (273)
                       -.|.+|+.+..|.
T Consensus        75 ~veY~LT~~G~~L~   88 (102)
T d2fswa1          75 RVEYSLTPLGEKVL   88 (102)
T ss_dssp             EEEEEECHHHHTTH
T ss_pred             eehhhhhHhHHHHH
Confidence             2499999987654

>d1j75a_ a.4.5.19 (A:) Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Z-DNA binding domain
domain: Dlm-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.39  E-value=0.035  Score=33.19  Aligned_cols=54  Identities=9%  Similarity=0.268  Sum_probs=44.8

Q ss_pred             HHhChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceec
Q 024046           45 IQLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYAL  105 (273)
Q Consensus        45 ~elglfd~L~~~g-~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~l  105 (273)
                      +|-.|+..|.+.| |....+|++.|++    +...+.++|..|...+=+...   +++.|.+
T Consensus         2 LEQkILQVL~dagspvk~~ql~k~cqV----pkk~lNqVL~rlkke~kVsl~---~patW~l   56 (57)
T d1j75a_           2 LEQKILQVLSDDGGPVKIGQLVKKCQV----PKKTLNQVLYRLKKEDRVSSP---EPATWSI   56 (57)
T ss_dssp             HHHHHHHHHHHHCSCEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEEE---ETTEEEE
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHCC----CHHHHHHHHHHHHhccccccC---CCccccC
Confidence            3566888999887 9999999999999    999999999999988887763   5555543

>d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Protease production regulatory protein Hpr
species: Bacillus subtilis [TaxId: 1423]

Probab=93.32  E-value=0.029  Score=42.39  Aligned_cols=65  Identities=14%  Similarity=-0.065  Sum_probs=51.1

Q ss_pred             HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccC---CCcceecChhchHhhc
Q 024046           46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFVS  114 (273)
Q Consensus        46 elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~---~~~~y~lt~~s~~l~~  114 (273)
                      +..++..|...++.|+.+||+.+++    +...+.++++-|...|++++....   +.-...+|+.+..+..
T Consensus        43 q~~vL~~l~~~~~~t~~~la~~~~l----~~~tvs~~i~rL~~~gli~r~~~~~D~R~~~l~lT~~G~~~~~  110 (162)
T d2fxaa1          43 EHHILWIAYQLNGASISEIAKFGVM----HVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFW  110 (162)
T ss_dssp             HHHHHHHHHHHTSEEHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHH
T ss_pred             HHHHHhhhccCCCcCHHHHHHHHcC----CchhhHHHHHHHHHCCCceeecccccCeeeeeccCHhHHHHHH
Confidence            3446777777679999999999999    999999999999999999964321   1136888998876553

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=93.10  E-value=0.074  Score=42.88  Aligned_cols=77  Identities=17%  Similarity=0.067  Sum_probs=47.7

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCCCeEEEeechHHH---HhCCC-C--CCceEEEcccCCCCCC--CC
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVV---QDAPS-Y--AGVEHVGGNMFESVPE--GD  257 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v~---~~a~~-~--~ri~~~~gD~f~~~p~--~D  257 (273)
                      ..+.+.+- +.+..+|||+|||.|..+-.++++.+..+..++++-.-.   +.... .  +-+++..++-+...|.  .|
T Consensus        56 ~~~~~~~~-~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l~~~~~D  134 (257)
T d2p41a1          56 RWFVERNL-VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCD  134 (257)
T ss_dssp             HHHHHTTS-SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCS
T ss_pred             HHHHHhcC-ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHhcCCCcCC
Confidence            34555553 677789999999999999999988776666666551100   01111 1  3356666555554443  48


Q ss_pred             EEEecc
Q 024046          258 AILMKV  263 (273)
Q Consensus       258 ~~~l~~  263 (273)
                      ++++-.
T Consensus       135 ~vlcDm  140 (257)
T d2p41a1         135 TLLCDI  140 (257)
T ss_dssp             EEEECC
T ss_pred             EEEeeC
Confidence            887653

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=93.05  E-value=0.04  Score=42.26  Aligned_cols=63  Identities=16%  Similarity=0.162  Sum_probs=44.9

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhCCC--------CCCceEEEcccCC--CCC--C--CCEEEe
Q 024046          198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS--------YAGVEHVGGNMFE--SVP--E--GDAILM  261 (273)
Q Consensus       198 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~--------~~ri~~~~gD~f~--~~p--~--~D~~~l  261 (273)
                      ..+|||+-+|+|.++.+.+.+-.. +++.+|. +.++..++.        .....+...|.++  .++  .  .|+|++
T Consensus        44 ~~~vLDlFaGsG~~glEalSRGA~-~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl  121 (183)
T d2ifta1          44 QSECLDGFAGSGSLGFEALSRQAK-KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL  121 (183)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred             cceEeecccCccceeeeeeeecce-eeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence            368999999999999999999765 7899997 665554432        1356777776554  111  2  388876

>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DNA-binding protein Mj223
domain: DNA-binding protein Mj223
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.79  E-value=0.05  Score=39.97  Aligned_cols=46  Identities=15%  Similarity=0.141  Sum_probs=38.6

Q ss_pred             HhChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           46 QLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        46 elglfd~L~~~-g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      +..|+-.|..+ +|.|+.|||+.+|+    +...+.+.++-|...|++.+.
T Consensus        28 ~~~i~~~L~~~~~plt~~ela~~l~v----sk~~vs~~l~~L~~~GlV~r~   74 (151)
T d1ku9a_          28 VGAVYAILYLSDKPLTISDIMEELKI----SKGNVSMSLKKLEELGFVRKV   74 (151)
T ss_dssp             HHHHHHHHHHCSSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHhCCCCcCHHHHHHHhCC----CcchHHHHHHHHHHCCCEEEE
Confidence            34456566544 48999999999999    999999999999999999864

>d2gxba1 a.4.5.19 (A:140-198) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Z-DNA binding domain
domain: Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.78  E-value=0.094  Score=32.01  Aligned_cols=44  Identities=16%  Similarity=0.247  Sum_probs=37.9

Q ss_pred             ChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           48 GVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        48 glfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      ++|..|......|+.+||.++++    +...+.|+|.-|...|-+.+.
T Consensus         6 ~~l~~lg~~~~~tA~~LA~kl~v----pKk~iNr~LYsL~~kgkl~k~   49 (59)
T d2gxba1           6 KFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKE   49 (59)
T ss_dssp             HHHHHHCTTCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHhcCCccchhHHHHHHHhCC----cHHHHHHHHHHHHHccchhhc
Confidence            45666665348999999999999    999999999999999999874

>d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Staphylococcal accessory regulator A homolog, SarS
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.73  E-value=0.053  Score=38.95  Aligned_cols=65  Identities=12%  Similarity=0.113  Sum_probs=48.8

Q ss_pred             HHhChhHHHHhC--CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           45 IQLGVFEIIAKA--GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        45 ~elglfd~L~~~--g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      .+..++..|...  ++.|..+||+.+++    +...+.++++-|...|++++.....+   -...+|+.++.+.
T Consensus        34 ~q~~vL~~l~~~~~~~~~~~~ia~~l~~----~~~~vs~~v~~L~~~glV~r~~~~~D~R~v~i~LT~~G~~~~  103 (125)
T d1p4xa2          34 VEFTILAIITSQNKNIVLLKDLIETIHH----KYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHA  103 (125)
T ss_dssp             HHHHHHHHHHTTTTCCEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHH
T ss_pred             HHHHHHHHHHHccCCCccHHHHHHHHCC----CcchHHHHHHHHHhccCEeeeecCCCCCeEEEEECHHHHHHH
Confidence            344466677432  36899999999999    99999999999999999987432222   2577888776544

>d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Staphylococcal accessory regulator A homolog, SarR
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.54  E-value=0.043  Score=38.79  Aligned_cols=64  Identities=20%  Similarity=0.232  Sum_probs=47.9

Q ss_pred             HhChhHHHH--hCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           46 QLGVFEIIA--KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        46 elglfd~L~--~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      +..++..|.  ..++.|..+||+.+++    ++..+.+++.-|...|++.+.....+   -...+|+.+..+.
T Consensus        34 q~~vL~~l~~~~~~~~t~~ela~~l~~----~~~~vs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~~~  102 (115)
T d1hsja1          34 EIYILNHILRSESNEISSKEIAKCSEF----KPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANI  102 (115)
T ss_dssp             HHHHHHHHHTCSCSEEEHHHHHHSSCC----CHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHH
T ss_pred             HHHHHHHHHccCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHcCCeEEEeecCCCceEEEEECHHHHHHH
Confidence            333555565  2358999999999999    99999999999999999996432122   2577888776544

>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: LexA repressor, N-terminal DNA-binding domain
domain: LexA repressor, N-terminal DNA-binding domain
species: Escherichia coli [TaxId: 562]

Probab=92.36  E-value=0.093  Score=33.68  Aligned_cols=38  Identities=26%  Similarity=0.385  Sum_probs=33.1

Q ss_pred             hCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           55 KAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        55 ~~g-~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      +.| |-|+.|||+.+|++   ++..+.+.|..|...|+++..
T Consensus        20 ~~G~~Ps~rei~~~~g~~---S~stv~~~l~~Le~kG~I~r~   58 (71)
T d1jhfa1          20 QTGMPPTRAEIAQRLGFR---SPNAAEEHLKALARKGVIEIV   58 (71)
T ss_dssp             HHSSCCCHHHHHHHTTCS---SHHHHHHHHHHHHHTTSEEEC
T ss_pred             HhCCCCCHHHHHHHcCCC---CHHHHHHHHHHHHHCcCeecC
Confidence            346 89999999999982   577899999999999999973

>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Pleiotropic regulator of virulence genes, SarA
species: Staphylococcus aureus [TaxId: 1280]

Probab=91.75  E-value=0.054  Score=38.22  Aligned_cols=61  Identities=13%  Similarity=0.175  Sum_probs=46.5

Q ss_pred             hhHHHHhC--CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           49 VFEIIAKA--GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        49 lfd~L~~~--g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      ++..|...  |+.|+.+||+.+++    ++..+.++++-|...|++.+.....+   -...+|+.++.+.
T Consensus        38 vL~~l~~~~~~~~t~~~la~~l~~----~~~tvs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~~~  103 (115)
T d2frha1          38 VLTYISENKEKEYYLKDIINHLNY----KQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKI  103 (115)
T ss_dssp             HHHHHHHTCCSEEEHHHHHHHSSS----HHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHH
T ss_pred             HHHHHHcCCCCCCCHHHHHHHHCC----CHhHHHHHHHHHHhhhhheeeecccCCceEEEEECHHHHHHH
Confidence            44455442  36899999999999    99999999999999999997532122   3577888886544

>d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Staphylococcal accessory regulator A homolog, SarS
species: Staphylococcus aureus [TaxId: 1280]

Probab=91.53  E-value=0.071  Score=38.14  Aligned_cols=65  Identities=12%  Similarity=0.122  Sum_probs=49.2

Q ss_pred             HHhChhHHHHhC--CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           45 IQLGVFEIIAKA--GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        45 ~elglfd~L~~~--g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      .++.++..|...  |+.|+.|||+.+++    +...+.++++-|...|++.+.....+   -...+|+.++..+
T Consensus        35 ~q~~iL~~l~~~~~~~~t~~eia~~~~~----~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~~~  104 (125)
T d1p4xa1          35 KEFILLTYLFHQQENTLPFKKIVSDLCY----KQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKI  104 (125)
T ss_dssp             HHHHHHHHHHSCSCSEEEHHHHHHHSSS----CGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCcCHHHHHHHhCC----CcchHHHHHHHHHHCCCceeecccCCCCeEEEEECHHHHHHH
Confidence            344566667543  47899999999999    99999999999999999987543222   2577888776543

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=91.21  E-value=0.34  Score=41.04  Aligned_cols=74  Identities=16%  Similarity=0.212  Sum_probs=51.5

Q ss_pred             CCcceEEEecCCccHHH-------H-HHHH--------HCCCCeEEEeechH-----HHHhCCCC----CC--ceEEEcc
Q 024046          196 QNVERLVDVGGGFGVTL-------S-MITS--------KYPQIKAVNFDLPH-----VVQDAPSY----AG--VEHVGGN  248 (273)
Q Consensus       196 ~~~~~vvDVGGG~G~~~-------~-~l~~--------~~P~l~~~~~Dlp~-----v~~~a~~~----~r--i~~~~gD  248 (273)
                      ++.-+|.|+||.+|..+       + .+.+        .-|++++..=|||.     +.......    +.  +..++|+
T Consensus        50 ~~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGS  129 (359)
T d1m6ex_          50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS  129 (359)
T ss_dssp             SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred             CCceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCc
Confidence            34567999999999865       2 2322        14677778889976     33322221    12  6778999


Q ss_pred             cCCC-CCCC--CEEEecccccccC
Q 024046          249 MFES-VPEG--DAILMKVGNFENY  269 (273)
Q Consensus       249 ~f~~-~p~~--D~~~l~~vLHd~~  269 (273)
                      ||.. +|..  ++++.+..||--+
T Consensus       130 FY~rLfP~~Slh~~~Ss~alHWLS  153 (359)
T d1m6ex_         130 FYGRLFPRNTLHFIHSSYSLMWLS  153 (359)
T ss_dssp             SSSCCSCTTCBSCEEEESCTTBCS
T ss_pred             hhhhcCCCCceEEeeehhhhhhhh
Confidence            9995 8875  9999999999655

>d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator DR1159
species: Deinococcus radiodurans [TaxId: 1299]

Probab=90.91  E-value=0.058  Score=40.87  Aligned_cols=64  Identities=13%  Similarity=0.154  Sum_probs=47.4

Q ss_pred             HhChhHHHHhCC---CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCC---cceecChhchHhh
Q 024046           46 QLGVFEIIAKAG---ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV  113 (273)
Q Consensus        46 elglfd~L~~~g---~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~---~~y~lt~~s~~l~  113 (273)
                      +..++-.|...|   +.|..+||+.+++    +...+.++++-|...|++++.....+   -...+|+.+..++
T Consensus        64 q~~vL~~L~~~~~~~~lt~~eLa~~l~i----~~~tvsr~l~~Le~~GlV~r~~~~~DrR~~~i~LT~~G~~l~  133 (172)
T d2fbka1          64 GWDLLLTLYRSAPPEGLRPTELSALAAI----SGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALV  133 (172)
T ss_dssp             HHHHHHHHHHHCCSSCBCHHHHHHHCSC----CSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHH
T ss_pred             HHHHHHHHHhhCCCCCcCHHHHHHHHCc----CHhHHHHHHHHHHhCCCeeeeccccchhhHHhhcCHHHHHHH
Confidence            344556665444   3899999999999    99999999999999999997432111   2477888877654

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=90.50  E-value=0.13  Score=41.06  Aligned_cols=55  Identities=13%  Similarity=0.096  Sum_probs=39.6

Q ss_pred             CcceEEEecCCccHHHHHHH----HHCCCCeEEEeec-hHHHHhCC-CCCCceEEEcccCC
Q 024046          197 NVERLVDVGGGFGVTLSMIT----SKYPQIKAVNFDL-PHVVQDAP-SYAGVEHVGGNMFE  251 (273)
Q Consensus       197 ~~~~vvDVGGG~G~~~~~l~----~~~P~l~~~~~Dl-p~v~~~a~-~~~ri~~~~gD~f~  251 (273)
                      ++++||+||.+.|..+.-++    ...++.+.+.+|+ +....... ..+||+++.||...
T Consensus        80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~  140 (232)
T d2bm8a1          80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSD  140 (232)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSC
T ss_pred             CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeeccccc
Confidence            56899999999998665443    2357889999998 43332222 24899999999765

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=90.25  E-value=0.15  Score=44.19  Aligned_cols=76  Identities=22%  Similarity=0.133  Sum_probs=52.0

Q ss_pred             HHHHhhcccCCCcceEEEecCCccHHHHHHHHHCCC-------------CeEEEeec-hHHHHhCCC--------CCCce
Q 024046          186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ-------------IKAVNFDL-PHVVQDAPS--------YAGVE  243 (273)
Q Consensus       186 ~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~-------------l~~~~~Dl-p~v~~~a~~--------~~ri~  243 (273)
                      ..+++.++ .....+|+|-.||+|.++.++.++..+             ....++|. |.....|.-        .+.+.
T Consensus       152 ~~mv~ll~-~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~  230 (425)
T d2okca1         152 QAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP  230 (425)
T ss_dssp             HHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCS
T ss_pred             Hhhheecc-CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccce
Confidence            34445444 445689999999999999988776432             34778887 666555432        24577


Q ss_pred             EEEcccCCCCCC--CCEEEec
Q 024046          244 HVGGNMFESVPE--GDAILMK  262 (273)
Q Consensus       244 ~~~gD~f~~~p~--~D~~~l~  262 (273)
                      ...+|++...+.  .|+|+..
T Consensus       231 i~~~d~l~~~~~~~fD~Ii~N  251 (425)
T d2okca1         231 IVCEDSLEKEPSTLVDVILAN  251 (425)
T ss_dssp             EEECCTTTSCCSSCEEEEEEC
T ss_pred             eecCchhhhhcccccceEEec
Confidence            888999985553  3887753

>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: C-terminal domain of RPA32
domain: C-terminal domain of RPA32
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.76  E-value=0.27  Score=31.23  Aligned_cols=55  Identities=11%  Similarity=0.174  Sum_probs=42.8

Q ss_pred             hChhHHHHhC---CCCCHHHHHHHh-CcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecCh
Q 024046           47 LGVFEIIAKA---GELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP  107 (273)
Q Consensus        47 lglfd~L~~~---g~~t~~eLA~~~-g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~  107 (273)
                      ..||.+|...   .++++.+|++++ ++    +...+...++.|...|++.--  -.++.|+.|.
T Consensus         9 ~~V~~~i~s~~~~eGi~~~el~~~l~~~----~~~~i~~aid~L~~eG~IYsT--iDddHfkstd   67 (69)
T d1dpua_           9 NQVLNLIKACPRPEGLNFQDLKNQLKHM----SVSSIKQAVDFLSNEGHIYST--VDDDHFKSTD   67 (69)
T ss_dssp             HHHHHHHHHCCCTTTEEHHHHHHHSTTS----CHHHHHHHHHHHHHTTSEEEC--SSTTEEEESS
T ss_pred             HHHHHHHHhCCCccCcCHHHHHHHccCC----CHHHHHHHHHHHHhCCceecc--cccchhcccC
Confidence            3455555542   279999999998 78    999999999999999999853  3557787664

>d2obpa1 a.4.5.71 (A:12-92) Putative DNA-binding protein ReutB4095 {Ralstonia eutropha [TaxId: 106590]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ReutB4095-like
domain: Putative DNA-binding protein ReutB4095
species: Ralstonia eutropha [TaxId: 106590]

Probab=89.75  E-value=0.39  Score=30.83  Aligned_cols=53  Identities=25%  Similarity=0.279  Sum_probs=43.8

Q ss_pred             CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecccc-CCCcceecChhchHhhc
Q 024046           58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS-GGERLYALNPVSKYFVS  114 (273)
Q Consensus        58 ~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~-~~~~~y~lt~~s~~l~~  114 (273)
                      +-|+..|+++.++    +-..|+|.|..|...|+.+..-. ++.|.=++|+.+..++.
T Consensus        24 ~WSLaklsKra~~----PMS~LRR~LTqL~~aGl~~t~~~edG~G~A~Lt~~G~~lca   77 (81)
T d2obpa1          24 PWSLPKIAKRAQL----PMSVLRRVLTQLQAAGLADVSVEADGRGHASLTQEGAALAA   77 (81)
T ss_dssp             CCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTTSCEEEEECHHHHHHHH
T ss_pred             CccHHHHHhhcCC----cHHHHHHHHHHHhhcCceeeeeccCCcceeeccHHHHHHHH
Confidence            8999999999999    99999999999999999874211 24467888988877653

>d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcription factor E/IIe-alpha, N-terminal domain
domain: Transcription factor E/IIe-alpha, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=89.58  E-value=0.1  Score=34.89  Aligned_cols=43  Identities=26%  Similarity=0.325  Sum_probs=37.8

Q ss_pred             ChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           48 GVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        48 glfd~L~~~-g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      .|++.|.+. +..|=++||+.+|+    +..-++++|..|...|++..
T Consensus        22 ~v~~~L~~~~~evtDe~iA~~tgi----~in~VRk~Ly~L~~~~L~~y   65 (88)
T d1q1ha_          22 DVLRILLDKGTEMTDEEIANQLNI----KVNDVRKKLNLLEEQGFVSY   65 (88)
T ss_dssp             HHHHHHHHHCSCBCHHHHHHTTTS----CHHHHHHHHHHHHHHTSCEE
T ss_pred             HHHHHHHhccCcCCHHHHHHHhCC----cHHHHHHHHHHHHhCCceEE
Confidence            377777643 47999999999999    99999999999999999975

>d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Z-DNA binding domain
domain: 34L
species: Yaba-like disease virus, YLDV [TaxId: 132475]

Probab=88.68  E-value=0.15  Score=32.34  Aligned_cols=43  Identities=9%  Similarity=0.072  Sum_probs=37.1

Q ss_pred             hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        49 lfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      ..+.|...+..|+-+||+.+|+    +.+.+.|.|.-|...|.+...
T Consensus        15 ~l~~L~~~~~~tA~~LAk~Lg~----~Kk~VNr~LY~L~~~G~v~~~   57 (70)
T d1sfua_          15 EVLSLNTNDYTTAISLSNRLKI----NKKKINQQLYKLQKEDTVKMV   57 (70)
T ss_dssp             HHHTSCTTCEECHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHhcCCCCCchHHHHHHHhCC----CHHHHHHHHHHHHHCCCeecC
Confidence            3455666458999999999999    999999999999999999975

>d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: CAP C-terminal domain-like
domain: Probable transcription regulator BT4300, C-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=88.49  E-value=0.21  Score=32.01  Aligned_cols=42  Identities=12%  Similarity=0.212  Sum_probs=36.4

Q ss_pred             CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecCh
Q 024046           58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP  107 (273)
Q Consensus        58 ~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~  107 (273)
                      +.|-+|||..+|+    +...+.|.|..|...|+++.    ..+.+.+..
T Consensus        27 ~lt~~elA~~lg~----sr~tvsr~l~~l~~~g~I~~----~~~~i~I~d   68 (73)
T d1zyba1          27 KVKMDDLARCLDD----TRLNISKTLNELQDNGLIEL----HRKEILIPD   68 (73)
T ss_dssp             ECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSCEE----ETTEEEESC
T ss_pred             ecCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEe----cCCEEEEcc
Confidence            6899999999999    99999999999999999985    455565544

>d2p8ta1 a.4.5.72 (A:14-82) Hypothetical protein PH0730 {Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PH0730 N-terminal domain-like
domain: Hypothetical protein PH0730
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=88.16  E-value=0.41  Score=30.30  Aligned_cols=49  Identities=16%  Similarity=0.143  Sum_probs=41.3

Q ss_pred             CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhchHhh
Q 024046           57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV  113 (273)
Q Consensus        57 g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~~l~  113 (273)
                      .|..-.-||+.+|+    .++.++-.++.|...|+++.   ...| -.+|+.++.++
T Consensus        16 qPiGRr~La~~L~l----~Er~vRte~~~Lk~~gLI~~---~~~G-m~lTe~G~~~l   64 (69)
T d2p8ta1          16 EPLGRKQISERLEL----GEGSVRTLLRKLSHLDIIRS---KQRG-HFLTLKGKEIR   64 (69)
T ss_dssp             SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE---C--C-EEECHHHHHHH
T ss_pred             CCccHHHHHHHcCC----cHHHHHHHHHHHHHCCCeee---eCCC-CEECHhHHHHH
Confidence            49999999999999    99999999999999999997   2445 45888887654

>d1y0ua_ a.4.5.5 (A:) Putative arsenical resistance operon repressor AF0168 {Archaeoglobus fulgidus [TaxId: 2234]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ArsR-like transcriptional regulators
domain: Putative arsenical resistance operon repressor AF0168
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.69  E-value=1.4  Score=28.20  Aligned_cols=64  Identities=19%  Similarity=0.227  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecChhch
Q 024046           37 LPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK  110 (273)
Q Consensus        37 ~~~aL~~a~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~~s~  110 (273)
                      ...++.-.++-.++..|..  ..+-+||.+.+++    +...++..|.+|..-=.+++    .++.|+.|..++
T Consensus        24 y~~av~nPvRrkiLrmi~k--grsedEIm~~l~L----SkkqldYHLk~LE~GfciEr----vge~w~~T~~G~   87 (89)
T d1y0ua_          24 YNYAVTNPVRRKILRMLDK--GRSEEEIMQTLSL----SKKQLDYHLKVLEAGFCIER----VGERWVVTDAGK   87 (89)
T ss_dssp             HHHHHSCHHHHHHHHHHHT--TCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE----ETTEEEECTTTC
T ss_pred             HHHHHhhHHHHHHHHHHHc--cCCHHHHHHHhcc----CHHHHHHHHHHHHccceeEe----cCCceeeccccc
Confidence            3456666778888888986  6899999999999    99999999999987555554    567899987654

>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: AraC type transcriptional activator
domain: MarA
species: Escherichia coli [TaxId: 562]

Probab=86.90  E-value=0.26  Score=29.38  Aligned_cols=40  Identities=18%  Similarity=0.266  Sum_probs=31.5

Q ss_pred             hhHHHHhC--CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCce
Q 024046           49 VFEIIAKA--GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVL   92 (273)
Q Consensus        49 lfd~L~~~--g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll   92 (273)
                      +.+.|.+.  .+.|+++||+.+|+    +++.+.|+.+......+.
T Consensus         8 v~~yI~~~~~~~~tl~~lA~~~~~----s~~~l~r~Fk~~~g~tp~   49 (54)
T d1bl0a1           8 ILDWIEDNLESPLSLEKVSERSGY----SKWHLQRMFKKETGHSLG   49 (54)
T ss_dssp             HHHHHHTTTTSCCCCHHHHHHSSS----CHHHHHHHHHHHHSSCHH
T ss_pred             HHHHHHhccCCCCCHHHHHHHHCc----CHHHHHHHHHHHHCcCHH
Confidence            34455543  39999999999999    999999999887766544

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=84.89  E-value=0.37  Score=38.64  Aligned_cols=71  Identities=10%  Similarity=0.179  Sum_probs=49.2

Q ss_pred             HHhhcccCCC--cceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHh-------CCCC--------CCceEEEccc
Q 024046          188 ILEHYEGFQN--VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQD-------APSY--------AGVEHVGGNM  249 (273)
Q Consensus       188 il~~~~~~~~--~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~-------a~~~--------~ri~~~~gD~  249 (273)
                      +.+++. ++.  ..+|||.-+|.|..+..++...  .+++.++. |.+...       +...        .|++++.+|.
T Consensus        78 l~kA~g-l~~~~~~~VlD~TaGlG~Da~vlA~~G--~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds  154 (250)
T d2oyra1          78 VAKAVG-IKGDYLPDVVDATAGLGRDAFVLASVG--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS  154 (250)
T ss_dssp             HHHHTT-CBTTBCCCEEETTCTTCHHHHHHHHHT--CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred             HHHHhc-CCCCCCCEEEECCCcccHHHHHHHhCC--CEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcH
Confidence            445544 443  3589999999999999999984  67999997 543322       1111        4899999997


Q ss_pred             CC---CCCC-CCEEEe
Q 024046          250 FE---SVPE-GDAILM  261 (273)
Q Consensus       250 f~---~~p~-~D~~~l  261 (273)
                      .+   .... .|+|++
T Consensus       155 ~~~L~~~~~~~DvIYl  170 (250)
T d2oyra1         155 LTALTDITPRPQVVYL  170 (250)
T ss_dssp             HHHSTTCSSCCSEEEE
T ss_pred             HHHHhccCCCCCEEEE
Confidence            65   2222 399887

>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: CAP C-terminal domain-like
domain: Transcriptional regulator PG0396, C-terminal domain
species: Porphyromonas gingivalis [TaxId: 837]

Probab=84.89  E-value=0.57  Score=30.17  Aligned_cols=33  Identities=30%  Similarity=0.221  Sum_probs=31.8

Q ss_pred             CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        58 ~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      |.|-+|||..+|+    +...+.|.|.-|...|+++.
T Consensus        29 ~lt~~eLA~~~G~----sretvsr~L~~l~~~glI~~   61 (81)
T d2gaua1          29 YLSREELATLSNM----TVSNAIRTLSTFVSERMLAL   61 (81)
T ss_dssp             CCCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred             cCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEe
Confidence            7899999999999    99999999999999999986

>d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: CAP C-terminal domain-like
domain: CO-sensing protein CooA, C-terminal domain
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=84.88  E-value=0.71  Score=29.71  Aligned_cols=43  Identities=16%  Similarity=0.280  Sum_probs=36.6

Q ss_pred             CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecCh
Q 024046           58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP  107 (273)
Q Consensus        58 ~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~  107 (273)
                      |.|-+|||..+|+    +...+.|.|..|...|+++..   ..+.+.+..
T Consensus        30 ~~t~~eiA~~lG~----sretvsr~l~~l~~~g~I~~~---~~~~i~I~d   72 (80)
T d1ft9a1          30 DFTVEEIANLIGS----SRQTTSTALNSLIKEGYISRQ---GRGHYTIPN   72 (80)
T ss_dssp             CCCHHHHHHHHCS----CHHHHHHHHHHHHHTTSSEEC---STTCEECSS
T ss_pred             CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEC---CCCeEEECC
Confidence            7899999999999    999999999999999999862   345565544

>d1okra_ a.4.5.39 (A:) Methicillin resistance regulatory protein MecI {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Penicillinase repressor
domain: Methicillin resistance regulatory protein MecI
species: Staphylococcus aureus [TaxId: 1280]

Probab=84.62  E-value=0.23  Score=34.89  Aligned_cols=51  Identities=20%  Similarity=0.215  Sum_probs=41.2

Q ss_pred             HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        45 ~elglfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      .|+.|..+|=+.||.|+.||.+.+....+.+..-+..+|+-|...|++...
T Consensus         8 ~E~~VM~~lW~~~~~t~~ei~~~l~~~~~~~~sTv~t~L~rL~~Kg~l~r~   58 (120)
T d1okra_           8 AEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRK   58 (120)
T ss_dssp             HHHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHhcccCccHHhHHHHHHHHHHCCCeEEE
Confidence            567788888887899999998887421112888999999999999999874

>d1s6la1 a.4.5.79 (A:21-80) Alkylmercury lyase MerB {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MerB N-terminal domain-like
domain: Alkylmercury lyase MerB
species: Escherichia coli [TaxId: 562]

Probab=84.45  E-value=0.32  Score=29.62  Aligned_cols=35  Identities=17%  Similarity=0.177  Sum_probs=27.1

Q ss_pred             hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHh
Q 024046           49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLV   87 (273)
Q Consensus        49 lfd~L~~~g~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~   87 (273)
                      ++..|+...|.|++.||..+|.    +.+.+...|..+.
T Consensus         7 LLr~LA~G~PVs~~~LA~alg~----~~~eV~~aL~~~p   41 (60)
T d1s6la1           7 LLRELAKGRPVSRTTLAGILDW----PAERVAAVLEQAT   41 (60)
T ss_dssp             HHHHHHTTCCBCHHHHHHHHTC----CHHHHHHHHTTCC
T ss_pred             HHHHHhCCCCcCHHHHHHHhCC----CHHHHHHHHHhCC
Confidence            5677887349999999999999    7777666665554

>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: CAP C-terminal domain-like
domain: Catabolite gene activator protein (CAP), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.59  E-value=0.48  Score=29.70  Aligned_cols=33  Identities=15%  Similarity=0.381  Sum_probs=31.8

Q ss_pred             CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceec
Q 024046           58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC   94 (273)
Q Consensus        58 ~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~   94 (273)
                      |.|-+|||..+|+    ....+.|.|.-|...|+++.
T Consensus        29 ~lt~~~lA~~~G~----sRetvsr~L~~l~~~glI~~   61 (69)
T d1i5za1          29 KITRQEIGQIVGC----SRETVGRILKMLEDQNLISA   61 (69)
T ss_dssp             ECCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred             CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE
Confidence            7999999999999    99999999999999999986

>d3e5ua1 a.4.5.4 (A:148-227) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: CAP C-terminal domain-like
domain: Chlorophenol reduction protein CprK
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=82.68  E-value=0.73  Score=29.64  Aligned_cols=42  Identities=17%  Similarity=0.165  Sum_probs=33.9

Q ss_pred             CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCcceecCh
Q 024046           58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP  107 (273)
Q Consensus        58 ~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~lt~  107 (273)
                      |.|-+|||..+|+    +...+.|.|.-|...|+++.    ..+.+.+..
T Consensus        30 ~lt~~elA~~~g~----sretvsr~l~~l~~~glI~~----~~~~i~I~d   71 (80)
T d3e5ua1          30 PLSQKSIGEITGV----HHVTVSRVLASLKRENILDK----KKNKIIVYN   71 (80)
T ss_dssp             CCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC--------CEESC
T ss_pred             CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEe----cCCEEEEcC
Confidence            7899999999999    99999999999999999985    444454433

>d2g9wa1 a.4.5.39 (A:3-124) Hypothetical protein Rv1846c {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Penicillinase repressor
domain: Hypothetical protein Rv1846c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.57  E-value=0.88  Score=31.92  Aligned_cols=52  Identities=12%  Similarity=0.094  Sum_probs=42.3

Q ss_pred             HHHhChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           44 AIQLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        44 a~elglfd~L~~~g-~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      ..|+.|.++|=+.| |.|+.||.+.+.-.++....-+.-+|+-|...|++...
T Consensus         7 ~~E~~IM~~lW~~g~~~t~~eI~~~l~~~~~~~~sTV~T~L~rL~~Kg~l~~~   59 (122)
T d2g9wa1           7 DLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQI   59 (122)
T ss_dssp             HHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHcCCCCccHHHHHHHHhccCCCcHHHHHHHHHHHHHCCCEEEe
Confidence            35677888887766 78999999999753333677899999999999999974

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=82.28  E-value=1.3  Score=37.20  Aligned_cols=62  Identities=13%  Similarity=0.245  Sum_probs=37.4

Q ss_pred             cchHHHHHHHHHhcchhhHHHHHhhcccCCCcceEEEecCCccHHHHHHHHHC-------CCCeEEEeechHHH
Q 024046          167 PRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-------PQIKAVNFDLPHVV  233 (273)
Q Consensus       167 ~~~~~~f~~am~~~~~~~~~~il~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-------P~l~~~~~Dlp~v~  233 (273)
                      |+....|.++.+.+   .. .+..... -++.-+||++|+|+|.++..+++..       -.++..+++....+
T Consensus        54 p~is~~Fg~~ia~~---~~-~~~~~~~-~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L  122 (365)
T d1zkda1          54 PEISQMFGELLGLW---SA-SVWKAAD-EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVL  122 (365)
T ss_dssp             HHHCHHHHHHHHHH---HH-HHHHHTT-CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHH
T ss_pred             CchHHHHHHHHHHH---HH-HHHHHhC-CCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhH
Confidence            44445566655422   11 2223333 3456789999999999998887653       23456788873333

>d1stza1 a.4.5.51 (A:14-100) Heat-inducible transcription repressor HrcA, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-inducible transcription repressor HrcA, N-terminal domain
domain: Heat-inducible transcription repressor HrcA, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=81.91  E-value=1.5  Score=28.90  Aligned_cols=37  Identities=5%  Similarity=-0.048  Sum_probs=32.1

Q ss_pred             C-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           57 G-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        57 g-~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      | |.+..+|++..|+  ..++.-++..|..|...|+++..
T Consensus        21 g~Pv~s~~i~~~~~l--~~S~aTIRn~m~~LE~~G~l~~~   58 (87)
T d1stza1          21 KKPVSSQRVLEVSNI--EFSSATIRNDMKKLEYLGYIYQP   58 (87)
T ss_dssp             CSCBCHHHHHHHSCC--CSCHHHHHHHHHHHHHTTSEECC
T ss_pred             CCccCHHHHHHHhCC--CCCHHHHHHHHHHHHHCCcccCC
Confidence            5 9999999999886  11588899999999999999864

>d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: GntR-like transcriptional regulators
domain: Putative transcriptional regulator RHA1 ro03477
species: Rhodococcus sp. RHA1 [TaxId: 101510]

Probab=81.38  E-value=0.97  Score=28.26  Aligned_cols=34  Identities=24%  Similarity=0.475  Sum_probs=31.7

Q ss_pred             CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceecc
Q 024046           58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS   95 (273)
Q Consensus        58 ~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~   95 (273)
                      .++..+||+.+|+    +..-+++-|..|...|+++..
T Consensus        25 ~l~~~~La~~~~v----Sr~tvr~Al~~L~~~Gli~~~   58 (69)
T d2hs5a1          25 RLSEPDICAALDV----SRNTVREAFQILIEDRLVAHE   58 (69)
T ss_dssp             EECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             ccCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEEE
Confidence            5678999999999    999999999999999999974

>d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: GntR-like transcriptional regulators
domain: Transcriptional regulator YydK
species: Bacillus subtilis [TaxId: 1423]

Probab=81.00  E-value=0.92  Score=29.08  Aligned_cols=41  Identities=17%  Similarity=0.284  Sum_probs=34.7

Q ss_pred             CC-CHHHHHHHhCcCCCCCcchHHHHHHHHhcCCceeccccCCCccee
Q 024046           58 EL-SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYA  104 (273)
Q Consensus        58 ~~-t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~~y~  104 (273)
                      .+ |..+||+.+|+    +..-+++-|..|...|+++..  .+.|.|-
T Consensus        21 ~LPse~~La~~~~v----Sr~tvr~Al~~L~~~Gli~~~--~g~G~~V   62 (78)
T d3bwga1          21 KLPVLETLMAQFEV----SKSTITKSLELLEQKGAIFQV--RGSGIFV   62 (78)
T ss_dssp             BCCCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE--TTTEEEE
T ss_pred             CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEEE--cCcEEEE
Confidence            56 89999999999    999999999999999999974  2345453