Citrus Sinensis ID: 024055

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270---
Protein Sequence
MLLGRVKSEDDNKLKSFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDLEDESPLPGEGIDKPRGCEHVG
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccHHHcHHHHHHHHHHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccHcHHccccEEEEEccHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Coil and Loop (DISEMBL)
mllgrvkseddnkLKSFQAGFLKNLKSLyrftrpntlNGLVIAVTSIcclplqnlgdltptffMETVVPAALMAIYMTAINQLVDVkidkinkpdlplasgdfsiKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAysidlpflRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDlhdvdgdkeygIRTFSVMLGKERMIKELLNLFknmdledesplpgegidkprgcehvg
Flexible Loop (DISEMBL)
mllgrvkseddnklksFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINKPdlplasgdfsIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKdlhdvdgdkeyGIRTFSVMLGKERMIKELLNLFKNMdledesplpgegidkprgcehvg
Low Complexity Region (SEG)
MLLGRVKSEDDNKLKSFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDLEDESPLPGEGIDKPRGCEHVG
Disordered region (IsUnstruct)
****************FQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKN************************
Disordered Region (DISOPRED)
***********************NLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDLEDESPLPGEGIDKPR******
Disordered Region (DISEMBL)
**********DNKLKSFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDLEDESPLPGEGIDKPRGCEHVG
Disordered Region (DISPRO)
***************SFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDLEDESPLPGEGI*KP*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLGRVKSEDDNKLKSFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDLEDESPLPGEGIDKPRGCEHVG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	273	2.2.26 [Sep-21-2011]
Q8VWJ1	393	Homogentisate phytyltrans	yes	no	0.886	0.615	0.439	4e-57
B7FA90	404	Probable homogentisate ph	yes	no	0.794	0.537	0.472	2e-54
B9A1Q4	409	Glycinol 4-dimethylallylt	no	no	0.831	0.555	0.402	3e-41
B1B3P3	410	Naringenin 8-dimethylally	N/A	no	0.776	0.517	0.362	6e-37
Q1ACB3	386	Homogentisate phytyltrans	no	no	0.805	0.569	0.293	3e-16
Q0D576	379	Probable homogentisate ph	no	no	0.772	0.556	0.296	1e-15
B1L6Z7	281	Digeranylgeranylglyceryl	yes	no	0.553	0.537	0.284	2e-10
A3CW74	279	Digeranylgeranylglyceryl	yes	no	0.710	0.695	0.293	2e-10
Q9Z5D6	302	Bacteriochlorophyll synth	yes	no	0.648	0.586	0.258	2e-10
Q4J8K2	275	Digeranylgeranylglyceryl	yes	no	0.655	0.650	0.271	5e-10

>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=VTE2-1 PE=2 SV=1

 Score =  221 bits (563), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 109/248 (43%), Positives = 169/248 (68%), Gaps = 6/248 (2%)

Query: 4   GRVKSEDDNKLKSFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFF 63
           G+ ++ D N   S Q  F  +L + YRF+RP+T+ G V+++ S+  L ++ + D++P  F
Sbjct: 79  GQPEAFDSN---SKQKSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLF 135

Query: 64  ---METVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSL 120
              +E VV A +M IY+  +NQL DV+IDK+NKP LPLASG++S+ TG+AI  + ++MS 
Sbjct: 136 TGILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSF 195

Query: 121 AMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIH 180
            +G ++GS PL W L + F+L TAYSI+LP LRWKR A +AA+ I+    + +Q +F++H
Sbjct: 196 WLGWIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLH 255

Query: 181 IQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMI 240
           IQ +V GR ++ TR LIF T  ++  S+  AL KD+ D++GDK +GIR+FSV LG++R+ 
Sbjct: 256 IQTHVFGRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVF 315

Query: 241 KELLNLFK 248
              + L +
Sbjct: 316 WTCVTLLQ 323

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone. Tocopherol functions to limit lipid oxidation during seed desiccation, quiescence and germination and early seedling development. Protects thylakoid membrane lipids from photooxidation and is required for low-temperature adaptation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: nEC: 8

>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT1 PE=2 SV=1

 Score =  212 bits (540), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 104/220 (47%), Positives = 151/220 (68%), Gaps = 3/220 (1%)

Query: 23  KNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFF---METVVPAALMAIYMTA 79
            +L + YRF+RP+T+ G  +++ S+  L ++NL D++P F    +E VV A  M IY+  
Sbjct: 106 SSLDAFYRFSRPHTVIGTALSIVSVSLLAVENLSDVSPLFLTGLLEAVVAALFMNIYIVG 165

Query: 80  INQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWF 139
           +NQL D++IDK+NKP LPLASG++S  TGVA+    A MS  +G  +GS PL   L + F
Sbjct: 166 LNQLFDIEIDKVNKPTLPLASGEYSPATGVALVSAFAAMSFGLGWAVGSQPLFLALFISF 225

Query: 140 ILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFT 199
           IL TAYSI+LPFLRWKR+A +AA+ I+    V +Q +FF+HIQ +V  R  V TR LIF 
Sbjct: 226 ILGTAYSINLPFLRWKRSAVVAALCILAVRAVIVQLAFFLHIQTFVFRRPAVFTRPLIFA 285

Query: 200 TGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERM 239
           T  +T  S+  AL KD+ D++GD+ +GI++FSV LG++++
Sbjct: 286 TAFMTFFSVVIALFKDIPDIEGDRIFGIKSFSVRLGQKKV 325

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydroquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1 SV=1

 Score =  168 bits (426), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 93/231 (40%), Positives = 140/231 (60%), Gaps = 4/231 (1%)

Query: 22  LKN-LKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFF---METVVPAALMAIYM 77
           +KN L + Y F+ P T+ G+ +   S   L ++ L D++ +F    ++ V+P   + IY+
Sbjct: 109 VKNVLSAFYWFSYPYTMIGITLCAFSSSLLAVEKLSDISLSFLIGVLQGVLPQLFIEIYL 168

Query: 78  TAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLIL 137
             +NQL D++IDKINKP LP+ASG FS KTGV I+     +S     + GS PL   L++
Sbjct: 169 CGVNQLYDLEIDKINKPHLPMASGQFSFKTGVIISAAFLALSFGFTWITGSWPLICNLVV 228

Query: 138 WFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLI 197
                TAYSID+P LRWKR  F+AA+ ++  + + +  S+F H+Q  VL R +   RSL 
Sbjct: 229 IASSWTAYSIDVPLLRWKRYPFVAAMCMISTWALALPISYFHHMQTVVLKRPIGFPRSLG 288

Query: 198 FTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFK 248
           F    +T  SL  AL KD+ DV+GDKE+GI +F+V LG++R     ++ F+
Sbjct: 289 FLVAFMTFYSLGLALSKDIPDVEGDKEHGIDSFAVRLGQKRAFWICVSFFE 339

Proposed to be involved in the biosynthesis of pterocarpan phytoalexins, specifically glyceollins. Can act as a prenyltransferase towards glycinol which is the direct precursor of glyceollins. Seems to be specific for prenylation at C-4 thus producing glyceollin I.

Glycine max (taxid: 3847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora flavescens GN=N8DT-1 PE=1 SV=1

 Score =  154 bits (389), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 78/215 (36%), Positives = 127/215 (59%), Gaps = 3/215 (1%)

Query: 28  LYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFF---METVVPAALMAIYMTAINQLV 84
            Y+F RP  +  +V+  T    + ++ L DL+  FF   ++ VV    + I+   +NQL 
Sbjct: 117 FYKFCRPYAMFTIVLGATFKSLVAVEKLSDLSLAFFIGWLQVVVAVICIHIFGVGLNQLC 176

Query: 85  DVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTA 144
           D++IDKINKPDLPLASG  S +  V IT +  ++ L    ++ S PL W + +  ++ +A
Sbjct: 177 DIEIDKINKPDLPLASGKLSFRNVVIITASSLILGLGFAWIVDSWPLFWTVFISCMVASA 236

Query: 145 YSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVIT 204
           Y++DLP LRWK+   L AI+ +    V     FF+H+Q  V  R     R LIF T +++
Sbjct: 237 YNVDLPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKRPTTFPRPLIFCTAIVS 296

Query: 205 CMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERM 239
             ++  AL KD+ D++GD+++GI++ S+ LG +R+
Sbjct: 297 IYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRV 331

Involved in the biosynthesis of sophoraflavanone G (SFG). Can use flavanones (naringenin, liquiritigenin and hesperetin) as substrates, but not flavonols or isoflavones. Shows a strict specificity for dimethylallyl diphosphate.

Sophora flavescens (taxid: 49840)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 0

>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis thaliana GN=HPT2 PE=2 SV=1

 Score = 85.5 bits (210), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 122/242 (50%), Gaps = 22/242 (9%)

Query: 3   LGRVKSEDD--NKLKSFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPL-QNLGDLT 59
           +G  +S+D   +++  FQ        + +RF RP+T+ G  +  T++    L +N   + 
Sbjct: 74  VGAAESDDPVLDRIARFQ-------NACWRFLRPHTIRGTALGSTALVTRALIENTHLIK 126

Query: 60  PTFFMETVVPAALMAI-----YMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLT 114
            +  ++ +  + L+A+     Y+  INQ+ D+ IDK+NKP LP+A+GD S+++   + + 
Sbjct: 127 WSLVLKAL--SGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIF 184

Query: 115 CAMMS-LAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGI 173
            A+   L +G   G P +     L   L T YS+  P LR KR    A + I    G  +
Sbjct: 185 FAIAGLLVVGFNFG-PFITSLYSLGLFLGTIYSV--PPLRMKRFPVAAFLIIATVRGFLL 241

Query: 174 QFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVM 233
            F  + H  +  LG     +  + F T  +T  +L  A+ KDL DV+GD+++ I T +  
Sbjct: 242 NFGVY-HATRAALGLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATK 300

Query: 234 LG 235
           LG
Sbjct: 301 LG 302

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT2 PE=3 SV=2

 Score = 83.6 bits (205), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 106/219 (48%), Gaps = 8/219 (3%)

Query: 22  LKNLK-SLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAI----Y 76
           L +LK S +RF RP+T+ G  +   ++    L     L   + +       +  I    Y
Sbjct: 80  LSDLKDSCWRFLRPHTIRGTALGSIALVARALIENPQLINWWLVFKAFYGLVALICGNGY 139

Query: 77  MTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLI 136
           +  INQ+ D++IDK+NKP LP+A+GD S++T   + +  A    ++ +    P +     
Sbjct: 140 IVGINQIYDIRIDKVNKPYLPIAAGDLSVQTAWLLVVLFAAAGFSIVVTNFGPFITSLYC 199

Query: 137 LWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSL 196
           L   L T YS+  P  R KR    A + I    G  + F  + +  +  LG +   +  +
Sbjct: 200 LGLFLGTIYSV--PPFRLKRYPVAAFLIIATVRGFLLNFGVY-YATRAALGLTFQWSSPV 256

Query: 197 IFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLG 235
            F T  +T  +L  A+ KDL DV+GD++Y I T +  LG
Sbjct: 257 AFITCFVTLFALVIAITKDLPDVEGDRKYQISTLATKLG 295

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B1L6Z7|DGGGP_KORCO Digeranylgeranylglyceryl phosphate synthase OS=Korarchaeum cryptofilum (strain OPF8) GN=Kcr_1480 PE=3 SV=1

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 88/172 (51%), Gaps = 21/172 (12%)

Query: 69  PAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGS 128
           P  LMA    AIN   D +ID INKP  P+ SG  S +  + I +  ++  +A+ I +G 
Sbjct: 46  PLVLMA--GNAINDYYDAEIDAINKPYRPIPSGRISKREALNIYIALSLFGIALSIFLG- 102

Query: 129 PPLAWGLILWFILVTAYSID-LPFLRWKRNAFLAAISIMIGYGVGIQFSF-FIHIQKYVL 186
                   + F++VTA+S+    + RW +   +   +++    +G+ F+  F  +    L
Sbjct: 103 -------FIEFLIVTAFSLSWYAYARWLKRTGVPGNALV---SLGVAFTLIFGSLAAGNL 152

Query: 187 GRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKER 238
              V+I  S+ FT+ +I      +  +K + D+ GD+ +G+RT +V +G +R
Sbjct: 153 TNKVIIFSSVAFTSNLI------REFVKAVEDLPGDRAHGVRTIAVRIGVKR 198

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Korarchaeum cryptofilum (strain OPF8) (taxid: 374847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|A3CW74|DGGGP_METMJ Digeranylgeranylglyceryl phosphate synthase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=Memar_1697 PE=3 SV=1

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 103/218 (47%), Gaps = 24/218 (11%)

Query: 24  NLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQL 83
           ++ +  R TRP+  N +V  +T++    L   G LTP   +  V+  AL+      IN +
Sbjct: 2   SVSAFIRITRPH--NAVVAGLTALIGY-LIATGTLTPPSLLLAVI-VALITAGGNVINDV 57

Query: 84  VDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVT 143
            DV+ID+IN+PD P+ +GD S+    A      +  +A+  +  +  LA  +I   IL+ 
Sbjct: 58  RDVEIDRINRPDRPIPAGDISLAGARAYAAALFVGGIAIATLTTTLCLAIAIINSVILIV 117

Query: 144 AYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSF---FIHIQKYVLGRSVVITRSLIFTT 200
            Y++     R KR   L   ++ + Y  G  F F   F  I+  V   S+     L    
Sbjct: 118 -YAV-----RLKRTPVLG--NVAVAYLAGSVFLFGGAFAGIEGLVRNLSLAAITFL---- 165

Query: 201 GVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKER 238
                 ++A+ LLKD  DVDGD   G RT  +++G  +
Sbjct: 166 -----ATIARELLKDAEDVDGDAAGGARTLPMIVGVRK 198

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) (taxid: 368407)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|Q9Z5D6|BCHG_RHOS4 Bacteriochlorophyll synthase 33 kDa chain OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=bchG PE=4 SV=1

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 90/186 (48%), Gaps = 9/186 (4%)

Query: 56  GDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTC 115
           G+  P   +  V+   L+     A N   D  +D +N+PD P+ SG    + G+ I L  
Sbjct: 46  GEKWPLVLLGMVLAGPLVCGMSQAANNWCDRHVDAVNEPDRPIPSGRIPGRWGLYIALLM 105

Query: 116 AMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQF 175
            ++SLA+G M+G  P  +G  + F ++ A++  +  +R KR+ +     + + Y  G+ +
Sbjct: 106 TVLSLAVGWMLG--PWGFGATV-FGVLAAWAYSVEPIRLKRSGWWGPGLVALCY-EGLPW 161

Query: 176 SFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLG 235
                +         ++T +L++  G    M+     L D   ++GD+++G+R+  VMLG
Sbjct: 162 FTGAAVLSAGAPSFFIVTVALLYAFGAHGIMT-----LNDFKALEGDRQHGVRSLPVMLG 216

Query: 236 KERMIK 241
            E   K
Sbjct: 217 PEVAAK 222

Catalyzes the esterification of bacteriochlorophyllide a by geranylgeraniol-PPi.

Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) (taxid: 272943)

>sp|Q4J8K2|DGGGP_SULAC Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=Saci_1565 PE=3 SV=1

 Score = 65.1 bits (157), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 93/195 (47%), Gaps = 16/195 (8%)

Query: 43  AVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGD 102
           AV++     +      TP FF+  +V  +L+A     IN + D+++DKINKP+ PL SG 
Sbjct: 19  AVSAFMGYVIATTWKFTPLFFLPLLV-VSLIAAGGYVINDVYDIEVDKINKPERPLPSGR 77

Query: 103 FSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAA 162
            ++      ++    + L + I +G  P  + LI   +L+  Y+  L  L    N  +A 
Sbjct: 78  IAVNIARRFSIVLFAVGLIISIPLGLIPFGFALIT-IVLLYEYARSLKKLGLVGNFIVAL 136

Query: 163 ISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGD 222
            S +  Y  G+           +LG  ++ T  + F T       L++  +K + D++GD
Sbjct: 137 TSALSAYYGGLA-------SGSLLGNFIIPTIYIFFFT-------LSREFVKGIEDIEGD 182

Query: 223 KEYGIRTFSVMLGKE 237
           K  G+ T +V LG++
Sbjct: 183 KRNGVNTLAVKLGEK 197

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) (taxid: 330779)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	273
224143266	284	predicted protein [Populus trichocarpa]	0.813	0.781	0.515	3e-60
219842170	411	homogentisate geranylgeranyl transferase	0.879	0.583	0.485	3e-60
359476155	397	PREDICTED: probable homogentisate phytyl	0.853	0.586	0.473	1e-59
296082088	398	unnamed protein product [Vitis vinifera]	0.853	0.585	0.473	2e-59
81295662	395	homogentisate phytyltransferase VTE2-1 [	0.868	0.6	0.457	7e-58
295656253	401	homogentisate geranylgeranyl transferase	0.853	0.581	0.476	6e-57
301154093	394	Chlorophyll synthase [Musa balbisiana]	0.798	0.553	0.470	4e-56
377657555	394	homogentisate phytyltransferase [Brassic	0.857	0.593	0.464	4e-56
301154114	398	Chlorophyll synthase [Musa balbisiana]	0.798	0.547	0.470	4e-56
185487419	407	homogentisate phytyltransferase [Manihot	0.875	0.587	0.454	1e-55

>gi|224143266|ref|XP_002324898.1| predicted protein [Populus trichocarpa] gi|222866332|gb|EEF03463.1| predicted protein [Populus trichocarpa]

 Score =  238 bits (606), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 116/225 (51%), Positives = 163/225 (72%), Gaps = 3/225 (1%)

Query: 25  LKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFM---ETVVPAALMAIYMTAIN 81
           L S Y+F+RP+T+ G +I +TS+  LP++ + +L+PTFFM   + +VP+ LM IY+  +N
Sbjct: 1   LHSFYQFSRPHTVIGTLIGITSVSLLPVETISELSPTFFMGLLKALVPSVLMNIYVVGLN 60

Query: 82  QLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFIL 141
           QL DV+IDK+NKP LPLASGDFS+ TGVAI     + S AMGIM  SP L   L++  +L
Sbjct: 61  QLFDVEIDKVNKPYLPLASGDFSMGTGVAIVSASLLASFAMGIMFQSPLLFSALLISCVL 120

Query: 142 VTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTG 201
            + YSI+LPFLRWK+ AFLAA  IMI   + +Q +FF+H+QK+VLG++ V+TRSL+F T 
Sbjct: 121 GSVYSIELPFLRWKKQAFLAATCIMIVRAIVVQLAFFVHMQKFVLGKTTVVTRSLVFATA 180

Query: 202 VITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNL 246
            +   S   AL KD+ DVDGD++YGI++FSV LG+ER+    +N+
Sbjct: 181 FMCFFSAVIALFKDIPDVDGDRDYGIQSFSVSLGQERVFWLCVNM 225

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219842170|dbj|BAH10642.1| homogentisate geranylgeranyl transferase [Hevea brasiliensis]

 Score =  238 bits (606), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 119/245 (48%), Positives = 175/245 (71%), Gaps = 5/245 (2%)

Query: 7   KSEDDNKL--KSFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFF- 63
            SED + +   S +   L++L SLY+F+RP+T+ G +I +TS+  LP++ + DL+PT+F 
Sbjct: 93  NSEDGDDICSSSKRGPILEHLNSLYQFSRPHTVIGTIIGITSVSLLPVETIVDLSPTYFI 152

Query: 64  --METVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLA 121
             ++ +VP+ LM IY+  +NQL DV+IDK+NKP LPLASG FS+ TG+ I     ++SL 
Sbjct: 153 GLLKALVPSVLMNIYVVGLNQLFDVEIDKVNKPYLPLASGKFSMATGILIVSASLLLSLY 212

Query: 122 MGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHI 181
           MGI   SPPL   L++ F L + YSI+LPFLRWK++AFLAA  I+I   + +Q +FF+HI
Sbjct: 213 MGITFQSPPLLAALLISFALGSVYSIELPFLRWKKHAFLAASCILIVRAMVVQLAFFVHI 272

Query: 182 QKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIK 241
           QK+VLG+S+ I RSL+F T  +   S A AL KD+ DV+GD++YGI++FSV LG+ER++ 
Sbjct: 273 QKFVLGKSIFIPRSLMFATAFMCFFSAAIALFKDIPDVEGDRDYGIQSFSVSLGQERVLW 332

Query: 242 ELLNL 246
             +N+
Sbjct: 333 LCVNM 337

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476155|ref|XP_002282953.2| PREDICTED: probable homogentisate phytyltransferase 1, chloroplastic-like [Vitis vinifera]

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 115/243 (47%), Positives = 167/243 (68%), Gaps = 10/243 (4%)

Query: 7   KSEDDNKLKSFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFF--- 63
           K ED N +        K L++ Y F+RP+T+ G VI +TS+  LPL+ + DL+P FF   
Sbjct: 90  KPEDQNHVS-------KQLRAFYLFSRPHTIIGTVIGITSVSLLPLETISDLSPAFFVGL 142

Query: 64  METVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMG 123
           ++ +VP+ LM IY+  +NQ+ DV+IDK+NKP+LPLASGDFS++TG  I     +MS+ MG
Sbjct: 143 LKAMVPSVLMNIYVVGLNQIFDVEIDKVNKPELPLASGDFSMETGSQIVFISLLMSVGMG 202

Query: 124 IMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQK 183
           IM  SPPL   L++ F+L TAYSI++P LRWKR   LAA  I+I   + +Q +FF HIQK
Sbjct: 203 IMFQSPPLFCALLISFLLGTAYSIEIPLLRWKRYPLLAASCILIVRAIVVQLAFFAHIQK 262

Query: 184 YVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKEL 243
           +VLGRS+V T+S++F    +   S   AL KD+ DVDGD+E+GI++F+V LG++++    
Sbjct: 263 HVLGRSIVYTKSVVFGVAFMCFFSTVIALFKDIPDVDGDREFGIQSFTVKLGQKKVFWLC 322

Query: 244 LNL 246
           +N+
Sbjct: 323 VNM 325

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082088|emb|CBI21093.3| unnamed protein product [Vitis vinifera]

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 115/243 (47%), Positives = 167/243 (68%), Gaps = 10/243 (4%)

Query: 7   KSEDDNKLKSFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFF--- 63
           K ED N +        K L++ Y F+RP+T+ G VI +TS+  LPL+ + DL+P FF   
Sbjct: 66  KPEDQNHVS-------KQLRAFYLFSRPHTIIGTVIGITSVSLLPLETISDLSPAFFVGL 118

Query: 64  METVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMG 123
           ++ +VP+ LM IY+  +NQ+ DV+IDK+NKP+LPLASGDFS++TG  I     +MS+ MG
Sbjct: 119 LKAMVPSVLMNIYVVGLNQIFDVEIDKVNKPELPLASGDFSMETGSQIVFISLLMSVGMG 178

Query: 124 IMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQK 183
           IM  SPPL   L++ F+L TAYSI++P LRWKR   LAA  I+I   + +Q +FF HIQK
Sbjct: 179 IMFQSPPLFCALLISFLLGTAYSIEIPLLRWKRYPLLAASCILIVRAIVVQLAFFAHIQK 238

Query: 184 YVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKEL 243
           +VLGRS+V T+S++F    +   S   AL KD+ DVDGD+E+GI++F+V LG++++    
Sbjct: 239 HVLGRSIVYTKSVVFGVAFMCFFSTVIALFKDIPDVDGDREFGIQSFTVKLGQKKVFWLC 298

Query: 244 LNL 246
           +N+
Sbjct: 299 VNM 301

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|81295662|gb|ABB70124.1| homogentisate phytyltransferase VTE2-1 [Allium ampeloprasum]

 Score =  229 bits (585), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 114/249 (45%), Positives = 166/249 (66%), Gaps = 12/249 (4%)

Query: 3   LGRVKSEDDNKLKSFQAGF---------LKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQ 53
           LG VK+  ++ L+S   G+         L +L  LY+F+RP+T+ G  + + S+  L ++
Sbjct: 68  LGHVKATSEHSLESGSEGYTPRSIWEAVLASLNVLYKFSRPHTIIGTAMGIMSVSLLVVE 127

Query: 54  NLGDLTPTFF---METVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVA 110
           +L D++P FF   +E VV A  M +Y+  +NQL D++IDK+NKPDLPLASG++S + G A
Sbjct: 128 SLSDISPLFFVGLLEAVVAALFMNVYIVGLNQLFDIEIDKVNKPDLPLASGEYSPRAGTA 187

Query: 111 ITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYG 170
           I +  A+MS  +G ++GS PL W L + F+L TAYSI+LPFLRWKR+A +AAI I+    
Sbjct: 188 IVIASAIMSFGIGWLVGSWPLFWALFISFVLGTAYSINLPFLRWKRSAVVAAICILAVRA 247

Query: 171 VGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTF 230
           V +Q +FF+HIQ +V  R    TR LIF T  ++  S+  AL KD+ D+DGDK +GI +F
Sbjct: 248 VIVQLAFFLHIQSFVFKRPASFTRPLIFATAFMSFFSVVIALFKDIPDIDGDKIFGIHSF 307

Query: 231 SVMLGKERM 239
           SV LG+ER+
Sbjct: 308 SVRLGQERV 316

Source: Allium ampeloprasum

Species: Allium ampeloprasum

Genus: Allium

Family: Amaryllidaceae

Order: Asparagales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|295656253|gb|ADG26667.1| homogentisate geranylgeranyl transferase [Coriandrum sativum]

 Score =  226 bits (577), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 113/237 (47%), Positives = 169/237 (71%), Gaps = 4/237 (1%)

Query: 6   VKSEDDNKLKSFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFF-- 63
           ++S+DD +L   Q    + + + YRF+RP+T+ G +I +TS+  LPL ++GDL+P FF  
Sbjct: 87  IESKDD-QLTLLQGDLWRKIDAFYRFSRPHTIIGTIIGITSVSLLPLTSIGDLSPAFFVG 145

Query: 64  -METVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAM 122
            ++ ++P+  M IY+  +NQL DV+IDK+NKP+LPLASG++S+  G AI     +MS AM
Sbjct: 146 YLKALIPSIFMNIYVVGLNQLFDVEIDKVNKPNLPLASGEYSMGLGKAIVSAFGLMSFAM 205

Query: 123 GIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQ 182
           GI+  SPP+ + L++ F+  +AYS++LP LRWKRNAFLAA SI++   + +  +FF HIQ
Sbjct: 206 GIVFQSPPVFFALLICFLFGSAYSVELPLLRWKRNAFLAAFSILMVRAITVNLAFFYHIQ 265

Query: 183 KYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERM 239
           KYVLGR +V  RSL F T  I+  +   AL KD+ DVDGD+++GI++FSV LG++R+
Sbjct: 266 KYVLGRPMVFPRSLCFATVCISMFTTVIALFKDIPDVDGDRDFGIQSFSVCLGQKRV 322

Source: Coriandrum sativum

Species: Coriandrum sativum

Genus: Coriandrum

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|301154093|emb|CBW30171.1| Chlorophyll synthase [Musa balbisiana]

 Score =  224 bits (570), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 104/221 (47%), Positives = 160/221 (72%), Gaps = 3/221 (1%)

Query: 22  LKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFF---METVVPAALMAIYMT 78
           L +L + YRF+RP+T+ G ++++ S+  L +++L D++P+F    +E V+ A  M IY+ 
Sbjct: 95  LTSLNAFYRFSRPHTVIGTIMSIISVSLLAVESLTDISPSFLTGLLEAVIAALFMNIYIV 154

Query: 79  AINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILW 138
            +NQ+ D++IDK+NKP+LPLASG++S++TGVA+ LT A MS  +  ++GS PL W L + 
Sbjct: 155 GLNQVYDIEIDKVNKPNLPLASGEYSLRTGVAVILTSAAMSFGVAWVVGSLPLFWALFIS 214

Query: 139 FILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIF 198
           FIL TAYS++LPFLRWKR A +AA+ I+    V +Q +FF+H+Q +V  RSV  +R LIF
Sbjct: 215 FILGTAYSVNLPFLRWKRFAVVAAVCILAVRAVVVQLAFFLHMQTFVFRRSVSFSRPLIF 274

Query: 199 TTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERM 239
            T  ++  S+  AL KD+ D++GD+ YGIR+FSV LG++R+
Sbjct: 275 ATAFMSFFSVVIALFKDIPDIEGDRIYGIRSFSVRLGQKRV 315

Source: Musa balbisiana

Species: Musa balbisiana

Genus: Musa

Family: Musaceae

Order: Zingiberales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|377657555|gb|AFB74211.1| homogentisate phytyltransferase [Brassica napus]

 Score =  224 bits (570), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 110/237 (46%), Positives = 165/237 (69%), Gaps = 3/237 (1%)

Query: 15  KSFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFF---METVVPAA 71
           KS    F  +L + YRF+RP+T+ G V+++ S+  L ++ + D++P  F   +E VV A 
Sbjct: 88  KSKPNSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGILEAVVAAL 147

Query: 72  LMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPL 131
           +M IY+  +NQL DV+IDK+NKP LPLASG++S+KTG+AI  + ++MS  +G ++GS PL
Sbjct: 148 MMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVKTGIAIVASFSIMSFWLGWIVGSWPL 207

Query: 132 AWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVV 191
            W L + FIL TAYSI+LP LRWKR A +AA+ I+    + +Q +F++HIQ +V GR V+
Sbjct: 208 FWALFVSFILGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRPVM 267

Query: 192 ITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFK 248
            TR LIF T  ++  S+  AL KD+ D++GDK +GIR+FSV LG+ER+    ++L +
Sbjct: 268 FTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQERVFWTCVSLLQ 324

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|301154114|emb|CBW30209.1| Chlorophyll synthase [Musa balbisiana]

 Score =  224 bits (570), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 104/221 (47%), Positives = 160/221 (72%), Gaps = 3/221 (1%)

Query: 22  LKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFF---METVVPAALMAIYMT 78
           L +L + YRF+RP+T+ G ++++ S+  L +++L D++P+F    +E V+ A  M IY+ 
Sbjct: 96  LTSLNAFYRFSRPHTVIGTIMSIISVSLLAVESLTDISPSFLTGLLEAVIAALFMNIYIV 155

Query: 79  AINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILW 138
            +NQ+ D++IDK+NKP+LPLASG++S++TGVA+ LT A MS  +  ++GS PL W L + 
Sbjct: 156 GLNQVYDIEIDKVNKPNLPLASGEYSLRTGVAVILTSAAMSFGVAWVVGSLPLFWALFIS 215

Query: 139 FILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIF 198
           FIL TAYS++LPFLRWKR A +AA+ I+    V +Q +FF+H+Q +V  RSV  +R LIF
Sbjct: 216 FILGTAYSVNLPFLRWKRFAVVAAVCILAVRAVVVQLAFFLHMQTFVFRRSVSFSRPLIF 275

Query: 199 TTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERM 239
            T  ++  S+  AL KD+ D++GD+ YGIR+FSV LG++R+
Sbjct: 276 ATAFMSFFSVVIALFKDIPDIEGDRIYGIRSFSVRLGQKRV 316

Source: Musa balbisiana

Species: Musa balbisiana

Genus: Musa

Family: Musaceae

Order: Zingiberales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|185487419|gb|ACC77744.1| homogentisate phytyltransferase [Manihot esculenta]

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 110/242 (45%), Positives = 162/242 (66%), Gaps = 3/242 (1%)

Query: 10  DDNKLKSFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFF---MET 66
           D    KS     L  L + YRF+RP+T+ G  +++ S+  L ++ L DL+P FF   +E 
Sbjct: 96  DAYSPKSTSNSILNALDAFYRFSRPHTVIGTALSILSVSLLAVEKLSDLSPLFFTGVLEA 155

Query: 67  VVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMI 126
           VV A LM IY+  +NQL D++IDK+NKP LPLASG++S+  GV I  + +MMS  +G ++
Sbjct: 156 VVAALLMNIYIVGLNQLTDIEIDKVNKPYLPLASGEYSVGIGVMIIASFSMMSFWLGWVV 215

Query: 127 GSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVL 186
           GS PL W L + F+L TAYSI+LP LRWKR AF+AA+ I+    V +Q +F++H+Q +V 
Sbjct: 216 GSWPLFWALFVSFVLGTAYSINLPLLRWKRFAFVAAMCILAVRAVIVQLAFYLHMQTHVY 275

Query: 187 GRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNL 246
           GR  V +R LIF T  ++  S+  AL KD+ D++GDK +GIR+F+V LG+ER+    ++L
Sbjct: 276 GRPAVFSRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFTVRLGQERVFWTCISL 335

Query: 247 FK 248
            +
Sbjct: 336 LE 337

Source: Manihot esculenta

Species: Manihot esculenta

Genus: Manihot

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	273
TAIR|locus:2044440	393	HPT1 "homogentisate phytyltran	0.886	0.615	0.439	1e-52
UNIPROTKB|B1B5P4	407	SfN8DT-2 "Naringenin 8-dimethy	0.787	0.528	0.371	8.9e-38
UNIPROTKB|B1B3P3	410	N8DT-1 "Naringenin 8-dimethyla	0.787	0.524	0.362	4.4e-36
TAIR|locus:4010713740	393	HST "homogentisate prenyltrans	0.809	0.562	0.297	1.2e-19

TAIR|locus:2044440 HPT1 "homogentisate phytyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
 Identities = 109/248 (43%), Positives = 169/248 (68%)

Query:     4 GRVKSEDDNKLKSFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFF 63
             G+ ++ D N   S Q  F  +L + YRF+RP+T+ G V+++ S+  L ++ + D++P  F
Sbjct:    79 GQPEAFDSN---SKQKSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLF 135

Query:    64 ---METVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSL 120
                +E VV A +M IY+  +NQL DV+IDK+NKP LPLASG++S+ TG+AI  + ++MS 
Sbjct:   136 TGILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSF 195

Query:   121 AMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIH 180
              +G ++GS PL W L + F+L TAYSI+LP LRWKR A +AA+ I+    + +Q +F++H
Sbjct:   196 WLGWIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLH 255

Query:   181 IQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMI 240
             IQ +V GR ++ TR LIF T  ++  S+  AL KD+ D++GDK +GIR+FSV LG++R+ 
Sbjct:   256 IQTHVFGRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVF 315

Query:   241 KELLNLFK 248
                + L +
Sbjct:   316 WTCVTLLQ 323

GO:0004659 "prenyltransferase activity" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0010189 "vitamin E biosynthetic process" evidence=IMP;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=ISS

GO:0010176 "homogentisate phytyltransferase activity" evidence=IMP;IDA

GO:0042362 "fat-soluble vitamin biosynthetic process" evidence=TAS

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;IMP

GO:0071555 "cell wall organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|B1B5P4 SfN8DT-2 "Naringenin 8-dimethylallyltransferase" [Sophora flavescens (taxid:49840)]

 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 81/218 (37%), Positives = 129/218 (59%)

Query:    25 LKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFF---METVVPAALMAIYMTAIN 81
             L + Y+F RP  +  +V+  T    + ++ L DL+  FF   ++ VV    + I+   +N
Sbjct:   111 LDTFYKFCRPYAIFSVVLGATFKSLVAVERLSDLSLAFFIGWLQVVVAVICIHIFDVGLN 170

Query:    82 QLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFIL 141
             QL D++IDKINKPDLPLASG+ S +  V IT +  ++ L    ++GS PL W + +  + 
Sbjct:   171 QLCDIEIDKINKPDLPLASGNLSFRNVVIITASSLILGLGFAWIVGSWPLFWTVFICCMF 230

Query:   142 VTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTG 201
               AY++DLP LRWK+   L AIS +    V     FF+H+Q  V  R     R LIF T 
Sbjct:   231 AAAYNVDLPLLRWKKYPVLTAISFIANVAVTRSLGFFLHMQTCVFKRPTTFPRPLIFCTA 290

Query:   202 VITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERM 239
             +++  ++  AL KD+ D++GD+++GI++ S+ LG +R+
Sbjct:   291 IVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRV 328

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|B1B3P3 N8DT-1 "Naringenin 8-dimethylallyltransferase 1, chloroplastic" [Sophora flavescens (taxid:49840)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 79/218 (36%), Positives = 128/218 (58%)

Query:    25 LKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFF---METVVPAALMAIYMTAIN 81
             L   Y+F RP  +  +V+  T    + ++ L DL+  FF   ++ VV    + I+   +N
Sbjct:   114 LDIFYKFCRPYAMFTIVLGATFKSLVAVEKLSDLSLAFFIGWLQVVVAVICIHIFGVGLN 173

Query:    82 QLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFIL 141
             QL D++IDKINKPDLPLASG  S +  V IT +  ++ L    ++ S PL W + +  ++
Sbjct:   174 QLCDIEIDKINKPDLPLASGKLSFRNVVIITASSLILGLGFAWIVDSWPLFWTVFISCMV 233

Query:   142 VTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTG 201
              +AY++DLP LRWK+   L AI+ +    V     FF+H+Q  V  R     R LIF T 
Sbjct:   234 ASAYNVDLPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKRPTTFPRPLIFCTA 293

Query:   202 VITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERM 239
             +++  ++  AL KD+ D++GD+++GI++ S+ LG +R+
Sbjct:   294 IVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRV 331

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:4010713740 HST "homogentisate prenyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 73/245 (29%), Positives = 124/245 (50%)

Query:     1 MLLGRVKSEDD--NKLKSFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPL-QNLGD 57
             +L+G  +S+D   +++  FQ        + +RF RP+T+ G  +  T++    L +N   
Sbjct:    79 ILVGAAESDDPVLDRIARFQ-------NACWRFLRPHTIRGTALGSTALVTRALIENTHL 131

Query:    58 LTPTFFMETVVPAALMAI-----YMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAIT 112
             +  +  ++ +  + L+A+     Y+  INQ+ D+ IDK+NKP LP+A+GD S+++   + 
Sbjct:   132 IKWSLVLKAL--SGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLV 189

Query:   113 LTCAMMSL-AMGIMIGSPPLAWGLI-LWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYG 170
             +  A+  L  +G   G  P    L  L   L T YS+  P LR KR    A + I    G
Sbjct:   190 IFFAIAGLLVVGFNFG--PFITSLYSLGLFLGTIYSV--PPLRMKRFPVAAFLIIATVRG 245

Query:   171 VGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTF 230
               + F  + H  +  LG     +  + F T  +T  +L  A+ KDL DV+GD+++ I T 
Sbjct:   246 FLLNFGVY-HATRAALGLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTL 304

Query:   231 SVMLG 235
             +  LG
Sbjct:   305 ATKLG 309


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.142   0.424    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      273       273    0.0010  114 3  11 22  0.41    33
                                                     32  0.40    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  601 (64 KB)
  Total size of DFA:  183 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.18u 0.15s 21.33t   Elapsed:  00:00:01
  Total cpu time:  21.18u 0.15s 21.33t   Elapsed:  00:00:01
  Start:  Sat May 11 08:51:00 2013   End:  Sat May 11 08:51:01 2013

GO:0004161 "dimethylallyltranstransferase activity" evidence=NAS

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0010355 "homogentisate farnesyltransferase activity" evidence=IDA

GO:0010356 "homogentisate geranylgeranyltransferase activity" evidence=IDA

GO:0010357 "homogentisate solanesyltransferase activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.5.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	273
PLN02878	280	PLN02878, PLN02878, homogentisate phytyltransferas	2e-85
PRK12887	308	PRK12887, ubiA, tocopherol phytyltransferase; Revi	3e-43
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	1e-20
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	5e-18
TIGR01476	283	TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chl	9e-12
PRK12884	279	PRK12884, ubiA, prenyltransferase; Reviewed	1e-10
PRK12882	276	PRK12882, ubiA, prenyltransferase; Reviewed	3e-10
PRK07566	314	PRK07566, PRK07566, bacteriochlorophyll/chlorophyl	3e-09
PRK09573	279	PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylgly	4e-09
PRK12883	277	PRK12883, ubiA, prenyltransferase UbiA-like protei	4e-08
PRK12872	285	PRK12872, ubiA, prenyltransferase; Reviewed	5e-08
PRK12392	331	PRK12392, PRK12392, bacteriochlorophyll c synthase	2e-07
PRK08238	479	PRK08238, PRK08238, hypothetical protein; Validate	0.001

>gnl|CDD|178466 PLN02878, PLN02878, homogentisate phytyltransferase

 Score =  256 bits (655), Expect = 2e-85
 Identities = 103/200 (51%), Positives = 141/200 (70%), Gaps = 3/200 (1%)

Query: 42  IAVTSICCLPLQNLGDLTPTFFM---ETVVPAALMAIYMTAINQLVDVKIDKINKPDLPL 98
           + +TS+  L +++L D +P FF    E +VPA LM IY+  +NQL D++IDK+NKP LPL
Sbjct: 1   LGITSVSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPL 60

Query: 99  ASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNA 158
           ASG+FS+ TGVAI  + A+MS  MG ++GS PL W L + F+L TAYSI+LP LRWKR+A
Sbjct: 61  ASGEFSVATGVAIVTSFAIMSFGMGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSA 120

Query: 159 FLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHD 218
             AA  I+    V +Q +FF+H+Q +VLGR  V TR LIF T  +   S+  AL KD+ D
Sbjct: 121 VAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDIPD 180

Query: 219 VDGDKEYGIRTFSVMLGKER 238
           V+GD+ +GIR+FSV LG++R
Sbjct: 181 VEGDRIFGIRSFSVRLGQKR 200

Length = 280

>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed

 Score =  148 bits (377), Expect = 3e-43
 Identities = 73/235 (31%), Positives = 127/235 (54%), Gaps = 16/235 (6%)

Query: 15  KSFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMA 74
           K+        L +L++F+RP+T+ G  ++V  +  + +      +        +   L A
Sbjct: 3   KNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAA----SSNTIALANLGLLLGA 58

Query: 75  --------IYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMI 126
                   +Y+  +NQL D++ID+INKP LPLA+G+FS + G  I +   +++L +   +
Sbjct: 59  WIACLCGNVYIVGLNQLTDIEIDRINKPHLPLAAGEFSRRQGQRIVIITGILALILA-AL 117

Query: 127 GSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVL 186
             P L   + +  ++ TAYS  LP +R KR   LAA+ I    GV +    F+H Q ++L
Sbjct: 118 LGPWLLITVGISLLIGTAYS--LPPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQ-WLL 174

Query: 187 GRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIK 241
           G SV+I  ++   T  +   + A A+ KD+ D++GD++Y I TF++ LGK+ + K
Sbjct: 175 GGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFK 229

Length = 308

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 87.9 bits (218), Expect = 1e-20
 Identities = 52/209 (24%), Positives = 92/209 (44%), Gaps = 14/209 (6%)

Query: 40  LVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKI--NKPDLP 97
            +  +  +  L L   G L     +  ++   L+      +N   D +ID    NKPD P
Sbjct: 2   PLALLPVLAGLALAAGGVLDLLLLLLLLLALLLLQAAGNVLNDYFDYEIDADNPNKPDRP 61

Query: 98  LASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRN 157
           L SG  S +  + + L   ++ L + +++G   L  GL+   + +  YS   P LR KR 
Sbjct: 62  LPSGRISPREALLLGLALLLLGLLLALLLGPLLLLLGLLGLLLGL-LYS---PPLRLKRR 117

Query: 158 AFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLH 217
             L  + + + +G+ I          Y +G  +     L+     +  +++   L  D+ 
Sbjct: 118 PLLGELVVGLAFGLLILLGA------YAVGGDIPSPLLLLALPVFLLSLAI--LLTNDIR 169

Query: 218 DVDGDKEYGIRTFSVMLGKERMIKELLNL 246
           DV+GD++ GIRT  V LG++R +     L
Sbjct: 170 DVEGDRKAGIRTLPVRLGRKRALALYALL 198

Length = 259

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score = 81.2 bits (201), Expect = 5e-18
 Identities = 47/220 (21%), Positives = 86/220 (39%), Gaps = 21/220 (9%)

Query: 22  LKNLKSLYRFTRP-NTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAI 80
           LK L  L R  RP   L  L++       L    L  L         +   L       I
Sbjct: 10  LKALLKLLRLDRPIFNLL-LLLPALLGLLLAASGLPSLKLLLLA--FLAFFLARSAGYVI 66

Query: 81  NQLVDVKIDKINKP--DLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILW 138
           N L D +ID+IN    + PL SG  S+K  + + +   ++ LA+ +++        L   
Sbjct: 67  NDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLSLA-A 125

Query: 139 FILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIF 198
            +L  AY         KR  FL  + + + +G+G                  +   + + 
Sbjct: 126 LVLALAY------PFLKRFTFLPQLVLGLAFGLGALAG-------AAAVGGSLPLLAWLL 172

Query: 199 TTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKER 238
               I   +L   ++  + D++GD++ G+++  V+ G ++
Sbjct: 173 LLAAI-LWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKK 211

Length = 289

>gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll synthetase

 Score = 63.6 bits (155), Expect = 9e-12
 Identities = 43/170 (25%), Positives = 82/170 (48%), Gaps = 10/170 (5%)

Query: 72  LMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPL 131
           L   +  +IN   D  +D IN+P  P+ SG  S++      L   +  L + +++G+  +
Sbjct: 49  LGTGFSQSINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAGLLVALVLGNWLI 108

Query: 132 AWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVV 191
               ++  +L   YS  +P ++ KRN +L   ++ + Y  G+ +     I   +  +SVV
Sbjct: 109 VLFTVVGIVLAVIYS--MPPIKLKRNGWLGPPAVGLSY-EGLPWMAGHAIFAPLTWQSVV 165

Query: 192 ITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIK 241
           +   LI++ G     +     L D   V+GD++ G+R+  VM+G +R   
Sbjct: 166 VA--LIYSLG-----AHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAI 208

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 283

>gnl|CDD|183812 PRK12884, ubiA, prenyltransferase; Reviewed

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 34/163 (20%), Positives = 75/163 (46%), Gaps = 15/163 (9%)

Query: 79  AINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILW 138
           A+N   D ++D+IN+PD P+ SG  S +  + + +   ++ L    +I        +++ 
Sbjct: 55  ALNDYFDYEVDRINRPDRPIPSGRISRREALLLAILLFILGLIAAYLISPLAFLVVILVS 114

Query: 139 FILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIF 198
            + +  Y+  L     K    +   ++ + +  G+ F F        +G        +I 
Sbjct: 115 VLGIL-YNWKL-----KEYGLIG--NLYVAFLTGMTFIF----GGIAVGELNEA---VIL 159

Query: 199 TTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIK 241
              +   M+L + ++KD+ DV+GD+  G RT +++ G++   +
Sbjct: 160 LAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGR 202

Length = 279

>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed

 Score = 58.8 bits (143), Expect = 3e-10
 Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 22/164 (13%)

Query: 79  AINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILW 138
           AIN   D +ID+IN+PD P+ SG  S +  +A ++      +A+  ++    LA  L   
Sbjct: 56  AINDYFDREIDRINRPDRPIPSGAVSPRGALAFSILLFAAGVALAFLLPPLCLAIALFNS 115

Query: 139 FILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIF 198
            +LV  Y+  L     K    L   S  + Y  G  F F         G + V T  L  
Sbjct: 116 LLLV-LYAETL-----KGTPGLGNAS--VAYLTGSTFLF---------GGAAVGTEGL-L 157

Query: 199 TTGVI----TCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKER 238
              V+       +LA+ ++KD+ D++GD+  G RT  +++G  +
Sbjct: 158 ALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRK 201

Length = 276

>gnl|CDD|236052 PRK07566, PRK07566, bacteriochlorophyll/chlorophyll a synthase; Reviewed

 Score = 56.5 bits (137), Expect = 3e-09
 Identities = 38/173 (21%), Positives = 77/173 (44%), Gaps = 21/173 (12%)

Query: 72  LMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPL 131
           L+      +N   D ++D IN+P  P+ SG  S++  + +     ++ LA+  ++G    
Sbjct: 76  LLCGTSQTLNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLAVAYLLG---- 131

Query: 132 AWGLILWFI-LVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGI-----QFSFFIHIQKYV 185
            W  +   + L  A+    P LR K+N +L   ++ + Y  G+       +F        
Sbjct: 132 PWVFLAALLGLFLAWIYSAPPLRLKQNGWLGNYAVGLSY-EGLPWWAGAAAF---GAGLP 187

Query: 186 LGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKER 238
               V++   L+++ G     +     L D   V+GD++ G+R+  V+ G++ 
Sbjct: 188 SWPIVILA--LLYSLG-----AHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKN 233

Length = 314

>gnl|CDD|181963 PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

 Score = 55.7 bits (135), Expect = 4e-09
 Identities = 39/164 (23%), Positives = 78/164 (47%), Gaps = 20/164 (12%)

Query: 79  AINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILW 138
            IN + D++IDKINKP+ P+ SG  S+K     ++T  ++ L + I I         I  
Sbjct: 55  VINDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGLILSIFIN--------IYA 106

Query: 139 FILVTAYSIDLPF--LRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSL 196
           F++    SI L       K+   +   ++++ Y  G+ F  F  +  + + R +++    
Sbjct: 107 FLIALLNSILLYLYAKDLKKTGLIG--NLIVAYLTGLSF-IFGGLAVFNVLRIIILFLCA 163

Query: 197 IFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMI 240
            F+T        ++ ++KD+ D++GD +  + T  +  G ++  
Sbjct: 164 FFST-------WSREIVKDIEDIEGDLKENVITLPIKYGIKKSW 200

Length = 279

>gnl|CDD|171796 PRK12883, ubiA, prenyltransferase UbiA-like protein; Reviewed

 Score = 52.8 bits (127), Expect = 4e-08
 Identities = 43/161 (26%), Positives = 78/161 (48%), Gaps = 20/161 (12%)

Query: 80  INQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWF 139
           IN   D +IDKIN+P+ PL  G  S K  +  +L    + LA+  +I      + L  + 
Sbjct: 56  INDYFDYEIDKINRPNRPLPRGAMSRKAALYYSLLLFAVGLALAYLINIEAFLFALGAYV 115

Query: 140 IL-VTAYSID-LPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLI 197
           ++ + A+ +  LPF+     A L   + +  YG        I + +  L   + I   L+
Sbjct: 116 LMFLYAWKLKPLPFIGNVVVALLTGATPI--YGA-------IAVGRIGLAGYLAICAFLV 166

Query: 198 FTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKER 238
                    ++A+ ++KD+ D++GDK  G +T  +++GK+R
Sbjct: 167 ---------NVAREIMKDIEDIEGDKAKGAKTLPIIIGKKR 198

Length = 277

>gnl|CDD|237241 PRK12872, ubiA, prenyltransferase; Reviewed

 Score = 52.6 bits (127), Expect = 5e-08
 Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 24/173 (13%)

Query: 73  MAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLA--MGIMIGSPP 130
            A+Y   IN L D++ D INKP+        +   G+ + L    + L   +  +IG P 
Sbjct: 50  AAVY--IINYLTDLEEDIINKPER--VVFSETKAYGLFLLLNVLGLYLGAYLLAVIGGPK 105

Query: 131 LAWGLILWFILVTAYSIDLPFLRWKR-----NAFLAAISIMIGYGVGIQFSFFIHIQKYV 185
            A   I+  IL   YS+     R KR     N  ++ +  +    +G            V
Sbjct: 106 FALIFIIPLILGILYSVFF-KRRLKRIPLFKNLVVSLLWALSPLILG------------V 152

Query: 186 LGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKER 238
               + I   L+     I   S  + ++ D+ D++GD++ G++T  ++LGKER
Sbjct: 153 YYYQLTIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKER 205

Length = 285

>gnl|CDD|171463 PRK12392, PRK12392, bacteriochlorophyll c synthase; Provisional

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 45/171 (26%), Positives = 79/171 (46%), Gaps = 31/171 (18%)

Query: 79  AINQLVDVKIDKINKPDLPLASGDFSIKTGV---AITLTCAM-MSLAMGIMIGSPPLAWG 134
           ++N   D+++D++N+P  P+ SG  S K  +    I L  A+ + + +G+ IG      G
Sbjct: 68  SVNDYFDLELDRVNEPTRPIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIG------G 121

Query: 135 LILWFI-------LVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFS---FFIHIQKY 184
                I       L  AY    P L+ K+N   +A ++   YG     S    F  I+  
Sbjct: 122 ERGMVIISSILAGLFVAYIYSAPPLKLKKNILTSAPAVGFSYGFITFLSANALFSDIRPE 181

Query: 185 VLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLG 235
           V+           +  G+   M++A  ++ D   V+GDKE G+++ +VM+G
Sbjct: 182 VV-----------WLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIG 221

Length = 331

>gnl|CDD|236195 PRK08238, PRK08238, hypothetical protein; Validated

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 10/85 (11%)

Query: 74  AIYMTAINQLVDVKIDKIN--KPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPL 131
           A+Y+  +N L+D++ D+ +  K   P ASG   I  G+A      +  LA+ + +G   L
Sbjct: 241 AVYI--LNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLALALALGPAFL 298

Query: 132 AWGLILWFILVTAYSIDLPFLRWKR 156
              L+ +  L  AYS     LR KR
Sbjct: 299 LV-LLAYLALTLAYS-----LRLKR 317

Length = 479

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	273
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	100.0
PLN02878	280	homogentisate phytyltransferase	100.0
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	100.0
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	100.0
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	100.0
PLN00012	375	chlorophyll synthetase; Provisional	100.0
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	100.0
PRK12392	331	bacteriochlorophyll c synthase; Provisional	100.0
PRK12882	276	ubiA prenyltransferase; Reviewed	100.0
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	100.0
PRK05951	296	ubiA prenyltransferase; Reviewed	100.0
PRK12884	279	ubiA prenyltransferase; Reviewed	100.0
PRK13595	292	ubiA prenyltransferase; Provisional	100.0
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	100.0
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	100.0
PRK13106	300	ubiA prenyltransferase; Reviewed	100.0
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	100.0
PLN02922	315	prenyltransferase	100.0
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	100.0
PRK12886	291	ubiA prenyltransferase; Reviewed	100.0
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	100.0
PRK12874	291	ubiA prenyltransferase; Reviewed	100.0
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	100.0
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK12895	286	ubiA prenyltransferase; Reviewed	100.0
PRK04375	296	protoheme IX farnesyltransferase; Provisional	100.0
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	100.0
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	100.0
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK12888	284	ubiA prenyltransferase; Reviewed	100.0
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	99.98
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	99.98
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	99.98
PRK13362	306	protoheme IX farnesyltransferase; Provisional	99.97
PRK13105	282	ubiA prenyltransferase; Reviewed	99.97
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	99.97
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	99.97
PRK12876	300	ubiA prenyltransferase; Reviewed	99.97
PRK12875	282	ubiA prenyltransferase; Reviewed	99.96
PRK12873	294	ubiA prenyltransferase; Reviewed	99.96
PRK12871	297	ubiA prenyltransferase; Reviewed	99.96
PRK12872	285	ubiA prenyltransferase; Reviewed	99.96
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.94
PRK13592	299	ubiA prenyltransferase; Provisional	99.94
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	99.94
PRK13591	307	ubiA prenyltransferase; Provisional	99.94
PLN02776	341	prenyltransferase	99.93
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	99.89
PRK08238	479	hypothetical protein; Validated	99.87
KOG1381	353	consensus Para-hydroxybenzoate-polyprenyl transfer	99.84
KOG4581	359	consensus Predicted membrane protein [Function unk	99.59
KOG1380	409	consensus Heme A farnesyltransferase [Coenzyme tra	99.55
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	93.56
PRK13591	307	ubiA prenyltransferase; Provisional	93.12
PRK13105	282	ubiA prenyltransferase; Reviewed	92.77
PRK12872	285	ubiA prenyltransferase; Reviewed	91.92
PRK12875	282	ubiA prenyltransferase; Reviewed	91.43
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	91.11
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	90.85
PLN00012	375	chlorophyll synthetase; Provisional	90.59
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	90.24
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	89.29
PLN02922	315	prenyltransferase	88.89
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	88.86
PRK13106	300	ubiA prenyltransferase; Reviewed	88.39
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	87.55
PRK12884	279	ubiA prenyltransferase; Reviewed	87.37
PRK13592	299	ubiA prenyltransferase; Provisional	87.11
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	87.01
PRK12888	284	ubiA prenyltransferase; Reviewed	86.94
PRK12874	291	ubiA prenyltransferase; Reviewed	86.77
PRK12886	291	ubiA prenyltransferase; Reviewed	86.11
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	86.06
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	86.02
PRK11383	145	hypothetical protein; Provisional	86.01
PRK12392	331	bacteriochlorophyll c synthase; Provisional	85.3
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	85.21
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	84.88
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	84.59
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	84.36
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	84.35
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	83.18
PRK12871	297	ubiA prenyltransferase; Reviewed	81.7
PRK12882	276	ubiA prenyltransferase; Reviewed	81.55
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	80.67
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	80.56
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	80.31

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=100.00  E-value=7.3e-39  Score=289.24  Aligned_cols=235  Identities=30%  Similarity=0.519  Sum_probs=186.8

Q ss_pred             hhhhhhhHHHHHHHHHhhccchhHHHHHHHHHHHHhhcccCCC-Cc---HHHHHHHHHHHHHHHHHHhhhhhhhchhhhh
Q 024055           15 KSFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGD-LT---PTFFMETVVPAALMAIYMTAINQLVDVKIDK   90 (273)
Q Consensus        15 ~~~~~~~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~-~~---~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~   90 (273)
                      |+..++..+.+++++|++|||+.+++.+++..+++++.....+ .+   ....+..++...+++.+++++|||+|+|+|+
T Consensus         3 ~~~~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD~   82 (308)
T PRK12887          3 KNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEIDR   82 (308)
T ss_pred             cchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHh
Confidence            3455667788999999999999999999998887765322111 11   1122233445566666777799999999999


Q ss_pred             hcCCCCccccCcCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHh
Q 024055           91 INKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYG  170 (273)
Q Consensus        91 ~n~~~Rpl~~G~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g  170 (273)
                      +|||+||+++|++|+++++.+.+++.++++.+++..|++.+.. ..++.+++++||.  ||+|+||+++.++++++...|
T Consensus        83 inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~~~-~~~~~~lg~~Ys~--pP~rlKr~~~~~~~~i~~~~g  159 (308)
T PRK12887         83 INKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLLIT-VGISLLIGTAYSL--PPIRLKRFPLLAALCIFTVRG  159 (308)
T ss_pred             cCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHcC--CchhhcccchhHHHHHHHHHH
Confidence            9999999999999999999999999999999999888766544 4577889999999  999999999989888888888


Q ss_pred             hhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHh
Q 024055          171 VGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNM  250 (273)
Q Consensus       171 ~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~  250 (273)
                      .++.+|.+.+.+.. .++....++..++..+++++++.++++.||++|+|+|++.|+||+|+++|+|++.+++..++.++
T Consensus       160 ~i~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~  238 (308)
T PRK12887        160 VIVNLGLFLHFQWL-LGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTAC  238 (308)
T ss_pred             HHHHHHHHHHHHHH-HhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHH
Confidence            77777766543221 22222344555666667778889999999999999999999999999999999999998888877


Q ss_pred             hhh
Q 024055          251 DLE  253 (273)
Q Consensus       251 ~~~  253 (273)
                      ++.
T Consensus       239 y~~  241 (308)
T PRK12887        239 YLG  241 (308)
T ss_pred             HHH
Confidence            764

>PLN02878 homogentisate phytyltransferase

Probab=100.00  E-value=1.3e-38  Score=279.32  Aligned_cols=205  Identities=50%  Similarity=0.830  Sum_probs=174.9

Q ss_pred             HHhhcccCCCCcHHH---HHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCccccCcCCHHHHHHHHHHHHHHHHHHHH
Q 024055           48 CCLPLQNLGDLTPTF---FMETVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGI  124 (273)
Q Consensus        48 ~~la~~~~~~~~~~~---~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~~~Rpl~~G~is~~~a~~~~~~~~~l~l~l~~  124 (273)
                      +++|.+...+..+..   .+.+++++++++.|..++|||+|+|+||+|||+||++||++|+++++.....+.++|+.+++
T Consensus         7 ~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~la~   86 (280)
T PLN02878          7 SLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMGW   86 (280)
T ss_pred             hHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            344544434443322   23567889999999999999999999999999999999999999999999999999999999


Q ss_pred             HhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHHHHHHHHHhhccccchhhHHHHHHHHHH
Q 024055          125 MIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVIT  204 (273)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  204 (273)
                      .+|++++.+....++++++.||.++||+|+||++++...++....+..+.+|+|.+++++++|.+...++..++...+++
T Consensus        87 ~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~~  166 (280)
T PLN02878         87 IVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMC  166 (280)
T ss_pred             HHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHHH
Confidence            99987777777777789999998779999999999988887777777788999988888888864444555566655777


Q ss_pred             HHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhh
Q 024055          205 CMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL  252 (273)
Q Consensus       205 ~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~  252 (273)
                      ++..+++++||++|+||||+.|+||+|+++|+|++.+++..++.++|+
T Consensus       167 ~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~  214 (280)
T PLN02878        167 FFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYA  214 (280)
T ss_pred             HHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHH
Confidence            788899999999999999999999999999999999999999999888

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=100.00  E-value=2.5e-37  Score=277.01  Aligned_cols=217  Identities=18%  Similarity=0.247  Sum_probs=173.5

Q ss_pred             HHHHHhhccchhHHHHHHHHHHHHhhcccCCC-CcHHHHHH-HHHHHHHHHHHHhhhhhhhchhhhhhcCCCCccccCcC
Q 024055           26 KSLYRFTRPNTLNGLVIAVTSICCLPLQNLGD-LTPTFFME-TVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDF  103 (273)
Q Consensus        26 ~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~-~~~~~~~l-~~l~~~~~~~~~~~~Nd~~D~~~D~~n~~~Rpl~~G~i  103 (273)
                      |++++++||+++..+++++++|.+++.....+ +++...++ .+++..+.+.++|.+|||+|+|+|++|+|+||+++|++
T Consensus         1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~~~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G~i   80 (283)
T TIGR01476         1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHWWLMLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSGII   80 (283)
T ss_pred             CceeEecCCceehhHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCCCc
Confidence            46789999999999999999999887322222 44443333 56688899999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHHHHHHHH
Q 024055          104 SIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQK  183 (273)
Q Consensus       104 s~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~~~~  183 (273)
                      |+++++.....+..+++++++.++.+...+..+++.+.+++||.  ||+++||++++|++.++..++..+....+.    
T Consensus        81 s~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~Ys~--~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~----  154 (283)
T TIGR01476        81 SLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLAVIYSM--PPIKLKRNGWLGPPAVGLSYEGLPWMAGHA----  154 (283)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecC--chhhhccCCCccHHHHHHHHHHHHHHHHHH----
Confidence            99999999999999999998888776533334566778999999  999999999889999998777544444332    


Q ss_pred             HhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhh
Q 024055          184 YVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL  252 (273)
Q Consensus       184 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~  252 (273)
                       ..+   ..++..++.....++++.++++.||++|+|+|+++|+||+|+++|+|++++++..++..+++
T Consensus       155 -~~~---~~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~  219 (283)
T TIGR01476       155 -IFA---PLTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQA  219 (283)
T ss_pred             -HhC---CCCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHH
Confidence             222   13333344444566677888999999999999999999999999999999998887666553

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=100.00  E-value=2e-36  Score=274.50  Aligned_cols=235  Identities=18%  Similarity=0.219  Sum_probs=180.2

Q ss_pred             ccccchhh-hhhhhhhHHHHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcH--H--HHHHHHHHHHHHHHHHhhhh
Q 024055            7 KSEDDNKL-KSFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTP--T--FFMETVVPAALMAIYMTAIN   81 (273)
Q Consensus         7 ~~~~~~~~-~~~~~~~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~--~--~~~l~~l~~~~~~~~~~~~N   81 (273)
                      +|+|+... ++-.+...+++|+|++++||+++..++++.+.|++.+. . .++..  .  .++..+++..+.++++|.+|
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~-~-~~~~~~~~~~~~l~~~l~~~l~~~~~~~~N   85 (314)
T PRK07566          8 TSKPRQLLGPKGASPTTSIWKARLQLMKPITWFPPMWAFLCGAVSSG-A-FGWTLENVLKLLAGMLLAGPLLCGTSQTLN   85 (314)
T ss_pred             ccccccccccccccccchHHHHHHHHhCCcchHHHHHHHHHHHHHcC-C-CCcchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44554422 22334456789999999999999999999888887653 2 22222  1  12234566777899999999


Q ss_pred             hhhchhhhhhcCCCCccccCcCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHH
Q 024055           82 QLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLA  161 (273)
Q Consensus        82 d~~D~~~D~~n~~~Rpl~~G~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~  161 (273)
                      ||+|+|+|++|+|+||+++|++|+++++.++..+.++++++++.+|++...+. +++++.+++||.  ||+++||+++++
T Consensus        86 d~~D~~~D~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-l~~~~~~~~Yt~--gP~~lK~~~~~g  162 (314)
T PRK07566         86 DYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAA-LLGLFLAWIYSA--PPLRLKQNGWLG  162 (314)
T ss_pred             hhhccCccccCCCCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHH-HHHHHHHHHhcC--Cccccccccchh
Confidence            99999999999999999999999999999999999999998888887665443 466677899999  999999999889


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHH
Q 024055          162 AISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIK  241 (273)
Q Consensus       162 ~~~v~~~~g~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~  241 (273)
                      ++.++..+|.++.+.++..    ..+.  ..++..++...+.+++..+++..||++|+|+|+++|+||+|+++|+|++++
T Consensus       163 ~i~vg~~~g~~~~~~g~~~----~~~~--~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~  236 (314)
T PRK07566        163 NYAVGLSYEGLPWWAGAAA----FGAG--LPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAAR  236 (314)
T ss_pred             hHHHHHHHHHHHHHHHHHH----hccC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHH
Confidence            9999998876555554432    1111  233333444445556677889999999999999999999999999999999


Q ss_pred             HHHHHHHHhhh
Q 024055          242 ELLNLFKNMDL  252 (273)
Q Consensus       242 ~~~~~~~~~~~  252 (273)
                      ++..++.++++
T Consensus       237 l~~~l~~~~~~  247 (314)
T PRK07566        237 IACVVIDLFQL  247 (314)
T ss_pred             HHHHHHHHHHH
Confidence            98776665544

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=100.00  E-value=7.9e-36  Score=269.76  Aligned_cols=221  Identities=19%  Similarity=0.269  Sum_probs=172.2

Q ss_pred             hhhHHHHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHH----HHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCC
Q 024055           19 AGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPT----FFMETVVPAALMAIYMTAINQLVDVKIDKINKP   94 (273)
Q Consensus        19 ~~~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~----~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~~   94 (273)
                      ....+++|+|++++||+++..++++++.|+..+ +++ ++...    .++..+++..+.++++|.+|||+|+|.|+.|+|
T Consensus        10 ~~~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~-~~~-~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~~   87 (306)
T TIGR02056        10 PGETNIWKIRLQLMKPITWIPLIWGVVCGAAAS-GNF-HWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINEP   87 (306)
T ss_pred             ccchhHHHHHHHHcChHhhHHHHHHHHHHHHHc-CCC-CcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCC
Confidence            356777899999999999999999999998864 222 22211    122345677899999999999999999999999


Q ss_pred             CCccccCcCCHHHHHHHHHHHHHHHHHHHHHhch------HHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHH
Q 024055           95 DLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGS------PPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIG  168 (273)
Q Consensus        95 ~Rpl~~G~is~~~a~~~~~~~~~l~l~l~~~~~~------~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~  168 (273)
                      +||+++|++++++++..+..+..+++++++.+..      +..+...+++++++++||.  ||+++||++++|++.++..
T Consensus        88 ~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~~~~~~~~Yt~--gP~~lk~~g~~G~i~vg~~  165 (306)
T TIGR02056        88 YRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALFGSFIAFIYSA--PPLKLKQNGWLGNFALGAS  165 (306)
T ss_pred             CCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcC--ChhhhhhcccHHHHHHHHH
Confidence            9999999999999999999888888887755421      2223334566778999999  9999999998899988887


Q ss_pred             HhhhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHH
Q 024055          169 YGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFK  248 (273)
Q Consensus       169 ~g~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~  248 (273)
                      ++..+..+.+.     ..|   +.++..++....+++++.++++.||++|+|+|+++|+||+|+++|+|++++++..++.
T Consensus       166 ~~~~~~~~~~a-----~~g---~~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~  237 (306)
T TIGR02056       166 YIALPWWAGHA-----LFG---ELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAID  237 (306)
T ss_pred             HHHHHHHHHHH-----HhC---CCcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHH
Confidence            77544444332     223   2344444445566778889999999999999999999999999999999999987655


Q ss_pred             Hhh
Q 024055          249 NMD  251 (273)
Q Consensus       249 ~~~  251 (273)
                      .++
T Consensus       238 ~~~  240 (306)
T TIGR02056       238 IFQ  240 (306)
T ss_pred             HHH
Confidence            433

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PLN00012 chlorophyll synthetase; Provisional

Probab=100.00  E-value=6.5e-35  Score=268.78  Aligned_cols=219  Identities=20%  Similarity=0.237  Sum_probs=168.4

Q ss_pred             hhHHHHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHH----HHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCC
Q 024055           20 GFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPT----FFMETVVPAALMAIYMTAINQLVDVKIDKINKPD   95 (273)
Q Consensus        20 ~~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~----~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~~~   95 (273)
                      ...+++|+|++++||++|...++++++|++.. +.+ ++...    .++..+++..++++++|.+|||+|+|.|++|+|+
T Consensus        80 ~~~~~~k~~l~L~RP~t~~~~~~~v~~G~~~~-g~~-~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~~  157 (375)
T PLN00012         80 QETDIWKIRLQLTKPVTWPPLVWGVLCGAAAS-GNF-HWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEPY  157 (375)
T ss_pred             cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-CCC-CchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCCCC
Confidence            34678999999999999999999999998843 222 22211    1234556778889999999999999999999999


Q ss_pred             CccccCcCCHHHHHHHHHHHHHHHHHHHHHh-------chHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHH
Q 024055           96 LPLASGDFSIKTGVAITLTCAMMSLAMGIMI-------GSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIG  168 (273)
Q Consensus        96 Rpl~~G~is~~~a~~~~~~~~~l~l~l~~~~-------~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~  168 (273)
                      ||+++|++++++++..+..+..+++.+++.+       +++.+.+ .+++++++++||.  ||+++||++++|++.+|..
T Consensus       158 Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l-~l~gi~l~~~YS~--pPl~lKr~~~~G~v~lG~~  234 (375)
T PLN00012        158 RPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYL-ALGGSLLSYIYSA--PPLKLKQNGWIGNYALGAS  234 (375)
T ss_pred             CCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH-HHHHHHHhhhhcC--CchhhhHhccHhHHHHHHH
Confidence            9999999999999998777777666666443       2323332 3456677999999  9999999999899988888


Q ss_pred             HhhhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHH
Q 024055          169 YGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFK  248 (273)
Q Consensus       169 ~g~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~  248 (273)
                      ++.++..+++.     +.|   ..++..++..+++++++.++++.||++|+|+|+++|++|+|+++|+|++++++..++.
T Consensus       235 ~~~lp~~~g~a-----~~g---~~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~  306 (375)
T PLN00012        235 YISLPWWAGQA-----LFG---TLTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSID  306 (375)
T ss_pred             HHHHHHHHHHH-----HcC---CCCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHH
Confidence            77544433332     334   2344444444566778889999999999999999999999999999999999876555


Q ss_pred             Hhh
Q 024055          249 NMD  251 (273)
Q Consensus       249 ~~~  251 (273)
                      +..
T Consensus       307 l~~  309 (375)
T PLN00012        307 ITQ  309 (375)
T ss_pred             HHH
Confidence            443

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=100.00  E-value=2.5e-35  Score=263.57  Aligned_cols=216  Identities=22%  Similarity=0.320  Sum_probs=174.5

Q ss_pred             HHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCccccCcC
Q 024055           24 NLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDF  103 (273)
Q Consensus        24 ~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~~~Rpl~~G~i  103 (273)
                      ++|+|++++||+++..++++.+.|++++.+..  .++..+++++++.+++++++|++|||+|+|+|++|+|+||+++|++
T Consensus         2 ~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~--~~~~~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG~i   79 (279)
T PRK09573          2 SIKAYFELIRPKNCIGASIGAIIGYLIASNFK--IDLKGIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPSGRI   79 (279)
T ss_pred             CHHHHHHHHhHhHHHHHHHHHHHHHHHHccCC--cchHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCCCcc
Confidence            47899999999999999999999998885432  2343445677888999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHHHHHHHH
Q 024055          104 SIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQK  183 (273)
Q Consensus       104 s~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~~~~  183 (273)
                      |+++++.++..+.++++.+++.+|+....++ +++.+..++||.     ++||++.++|+++|..+|..+..|...    
T Consensus        80 s~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Ys~-----~lKr~~~~~~~~vg~~~G~~~~~g~~~----  149 (279)
T PRK09573         80 SLKEAKIFSITLFIVGLILSIFINIYAFLIA-LLNSILLYLYAK-----DLKKTGLIGNLIVAYLTGLSFIFGGLA----  149 (279)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----HHhcCCcHHHHHHHHHHHHHHHHHHHH----
Confidence            9999999999999999999888887766554 456667889997     789999889999999999665444332    


Q ss_pred             HhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhhhccCCCC
Q 024055          184 YVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDLEDESPLP  259 (273)
Q Consensus       184 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~~~~~~~~  259 (273)
                       ..+   ...  .++.....++|+.++++.||++|+|+|+++|+||+|+++|+|++.++......+..+  .+++|
T Consensus       150 -~~~---~~~--~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~--~~~~~  217 (279)
T PRK09573        150 -VFN---VLR--IIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIV--LSPLP  217 (279)
T ss_pred             -Hcc---chH--HHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHH--HHHHH
Confidence             112   111  222233445667788999999999999999999999999999999999888777666  44444

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=100.00  E-value=6e-34  Score=259.00  Aligned_cols=220  Identities=20%  Similarity=0.360  Sum_probs=164.6

Q ss_pred             hhHHHHHHHHHhhccchhHHHHHHHHHHHHhhcccC-CCCcHHHH--HHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCC
Q 024055           20 GFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNL-GDLTPTFF--METVVPAALMAIYMTAINQLVDVKIDKINKPDL   96 (273)
Q Consensus        20 ~~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~-~~~~~~~~--~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~~~R   96 (273)
                      +..+++|++++++||+++. ..++.+.|.++|.+.. ++.....+  ...++...+...++|++|||+|+|+|++|+|.|
T Consensus         7 ~~~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~~l~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtR   85 (331)
T PRK12392          7 GFVDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDYLLLLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTR   85 (331)
T ss_pred             chhHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHHHHHHHHhHHhcceeecccccCCCCC
Confidence            4567799999999999887 6777777777775322 22222211  112233344456789999999999999999999


Q ss_pred             ccccCcCCHHHHHHHHHHHHHHHHHHHHHhch-------HHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHH
Q 024055           97 PLASGDFSIKTGVAITLTCAMMSLAMGIMIGS-------PPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGY  169 (273)
Q Consensus        97 pl~~G~is~~~a~~~~~~~~~l~l~l~~~~~~-------~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~  169 (273)
                      |+++|++|+++++.....+..+++.++.+++.       +..++..+++++++++||.  ||+++||+++.++..+|+.+
T Consensus        86 pl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~--~P~~lKr~~~~g~~~vGl~~  163 (331)
T PRK12392         86 PIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSA--PPLKLKKNILTSAPAVGFSY  163 (331)
T ss_pred             CCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcC--CchhhhccchhHHHHHHHHH
Confidence            99999999999999999999988888766542       2233333466778999999  99999999988998899888


Q ss_pred             hhhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHH
Q 024055          170 GVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKN  249 (273)
Q Consensus       170 g~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~  249 (273)
                      +..+....+     ..++   ..++..++.....++++.+++++||++|+|+|++.|+||+|+++|+|++.+++.....+
T Consensus       164 ~~~~~~~~~-----a~~g---~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~  235 (331)
T PRK12392        164 GFITFLSAN-----ALFS---DIRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDL  235 (331)
T ss_pred             HHHHHHHHH-----HHhc---CCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHH
Confidence            754433322     1334   23333344445667788899999999999999999999999999999999888777643


Q ss_pred             h
Q 024055          250 M  250 (273)
Q Consensus       250 ~  250 (273)
                      .
T Consensus       236 ~  236 (331)
T PRK12392        236 V  236 (331)
T ss_pred             H
Confidence            3

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.8e-34  Score=257.72  Aligned_cols=213  Identities=21%  Similarity=0.277  Sum_probs=170.5

Q ss_pred             HHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCccccCcC
Q 024055           24 NLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDF  103 (273)
Q Consensus        24 ~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~~~Rpl~~G~i  103 (273)
                      ++|+|++++||++...+.++.+.|++++.+..+  +....++++++.++.++++|++||++|+|+|+.|+|+||+++|++
T Consensus         3 ~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~~~--~~~~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~G~i   80 (276)
T PRK12882          3 TVRGYLELTRPVNAVVAGVAAFIGAFIAGGILS--SPSLTGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPSGAV   80 (276)
T ss_pred             CHHHHHHHHhhhHHHHHHHHHHHHHHHhccccc--hHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCCCCc
Confidence            478999999999999999999999999854322  222234677888999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHHHHHHHH
Q 024055          104 SIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQK  183 (273)
Q Consensus       104 s~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~~~~  183 (273)
                      |++|++.++..+.++|+++++.+++....++ ..+.+..+.||.     |+||++.++|+.++...|..+..+..     
T Consensus        81 s~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~-~~~~~~~~~Yt~-----~lK~~~~~g~~~vg~~~g~~~~~g~~-----  149 (276)
T PRK12882         81 SPRGALAFSILLFAAGVALAFLLPPLCLAIA-LFNSLLLVLYAE-----TLKGTPGLGNASVAYLTGSTFLFGGA-----  149 (276)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----HHhcccchhHHHHHHHHHHHHHHHHH-----
Confidence            9999999999999999999888887665543 455567889998     89999988999999888854444422     


Q ss_pred             HhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhh
Q 024055          184 YVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL  252 (273)
Q Consensus       184 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~  252 (273)
                       ..+..  .....+......++++.+++++||++|+|+|+++|+||+|+++|+|++.++...+.....+
T Consensus       150 -~~~~~--~~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~  215 (276)
T PRK12882        150 -AVGTE--GLLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVA  215 (276)
T ss_pred             -Hhccc--chHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHH
Confidence             12211  1111222233445567789999999999999999999999999999999998888776665

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=100.00  E-value=5.7e-34  Score=258.34  Aligned_cols=223  Identities=16%  Similarity=0.072  Sum_probs=176.1

Q ss_pred             HHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC----CCCcccc
Q 024055           25 LKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINK----PDLPLAS  100 (273)
Q Consensus        25 l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~----~~Rpl~~  100 (273)
                      +|.|++++||++...++.|+++|.++|.....++++..++++++++++.|.++|.+|||+|++.|..++    ++|++++
T Consensus         3 ~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~i~~   82 (317)
T PRK13387          3 AKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWLLFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNGIGQ   82 (317)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcchhcc
Confidence            688999999999999999999999998654456777777677888899999999999999998765554    6799999


Q ss_pred             CcCCHHHHHHHHHHHHHHHHHH----HHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHH
Q 024055          101 GDFSIKTGVAITLTCAMMSLAM----GIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFS  176 (273)
Q Consensus       101 G~is~~~a~~~~~~~~~l~l~l----~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~  176 (273)
                      |.+++++++..+..+..++.++    .+..|+..+ +.++++++.+++||.  ||+++||++ +||+.++.++|..+..+
T Consensus        83 ~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~~~l-~igl~g~~~~~~Yt~--gP~~l~y~g-LGe~~v~i~~G~~~v~g  158 (317)
T PRK13387         83 HGLKPRNVLTVILLMYVVAAILGVYLCMNTSWLLL-VIGLICFAIGILYTG--GPLPLSRMP-LGEIFSGLTMGFGIFLL  158 (317)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHH-HHHHHHHHHhhhhcC--CCcccccCc-cHHHHHHHHHHHHHHHH
Confidence            9999999999998888777764    444564444 445678889999999  999999999 69999999999777666


Q ss_pred             HHHHHHHHhhcccc----------chhhH----HHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHH
Q 024055          177 FFIHIQKYVLGRSV----------VITRS----LIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKE  242 (273)
Q Consensus       177 ~~~~~~~~~~g~~~----------~~~~~----~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~  242 (273)
                      .++. |+...+...          .++..    .++..+.+++.+..+++.||+||+|+|+++|+||+|+++|+|+++++
T Consensus       159 ~~yv-~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l  237 (317)
T PRK13387        159 AVYI-NTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVL  237 (317)
T ss_pred             HHHH-hcCCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHH
Confidence            6553 321111000          00000    11234556666777899999999999999999999999999999999


Q ss_pred             HHHHHHHhhh
Q 024055          243 LLNLFKNMDL  252 (273)
Q Consensus       243 ~~~~~~~~~~  252 (273)
                      +..++..+++
T Consensus       238 ~~~l~~~a~l  247 (317)
T PRK13387        238 FAILFYASYL  247 (317)
T ss_pred             HHHHHHHHHH
Confidence            9998888776

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=6.5e-34  Score=256.23  Aligned_cols=215  Identities=16%  Similarity=0.184  Sum_probs=170.6

Q ss_pred             HHHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC-----CCCc
Q 024055           23 KNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINK-----PDLP   97 (273)
Q Consensus        23 ~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~-----~~Rp   97 (273)
                      .++|.+++.+||+++..+..++++|.++|.....++++..+++++++.+++|.++|.+|||+|+|.|..++     ++||
T Consensus         2 ~~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~r~   81 (296)
T PRK05951          2 QNAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPLLGALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYRQHP   81 (296)
T ss_pred             ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCCCCc
Confidence            36899999999999999999999999998654457788777788899999999999999999976655554     7899


Q ss_pred             cccCcCCHHHHHHHHHHHHHHHHHHHHH----hchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhH
Q 024055           98 LASGDFSIKTGVAITLTCAMMSLAMGIM----IGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGI  173 (273)
Q Consensus        98 l~~G~is~~~a~~~~~~~~~l~l~l~~~----~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~  173 (273)
                      +++|++|++|++..+..+..+++.++..    .+.+.+ +..+++.+.++.||.  ||+++|+++ +||+.++.++|+.+
T Consensus        82 l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l-~l~~~~~~~~~~Yt~--~P~~lky~g-lGe~~v~~~~g~~~  157 (296)
T PRK05951         82 IQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAV-TLALLGVFLWTCYMG--PPFFLKYRW-LGEHLVFYAWSHML  157 (296)
T ss_pred             cccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHHHHHHHHHHHcC--CCcccCCCC-chHHHHHHHHHHHH
Confidence            9999999999999998877776655422    244333 334577789999999  999999998 59999999999877


Q ss_pred             HHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHH
Q 024055          174 QFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKN  249 (273)
Q Consensus       174 ~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~  249 (273)
                      .++.+.. ++   +   ..++..+.......+++....+.||+||+|+|+++|+||+|+++|+|++ ++...+...
T Consensus       158 vlg~~~~-~~---~---~~~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~  225 (296)
T PRK05951        158 VMGLIYV-WL---G---NLSSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLS  225 (296)
T ss_pred             HHHHHHH-Hh---C---cccHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHH
Confidence            7887654 22   2   2233334444556666778899999999999999999999999999999 554444443

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=2.8e-34  Score=256.79  Aligned_cols=212  Identities=22%  Similarity=0.329  Sum_probs=171.0

Q ss_pred             HHHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCccccCc
Q 024055           23 KNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGD  102 (273)
Q Consensus        23 ~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~~~Rpl~~G~  102 (273)
                      +++++|++++||+++..+.++.+.|.++|.+..+   +..+++.+++.++.+.++|++|||+|+|+|+.|+|+||+++|+
T Consensus         2 ~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~~~---~~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~~G~   78 (279)
T PRK12884          2 TKMKAYLELLRPEHGLMAGIAVVLGAIIALGGLP---LDEALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIPSGR   78 (279)
T ss_pred             hHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCc---hHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCCCCC
Confidence            4789999999999999999999999988855432   2234466788899999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHHHHHHH
Q 024055          103 FSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQ  182 (273)
Q Consensus       103 is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~~~  182 (273)
                      +|+++++.++.++.++++++++.+|+....+. +++.+.++.||.     ++||++++++++++..+|..+..++..   
T Consensus        79 is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~Ys~-----~lK~~~~~~~~~~~~~~~~~~~~g~~~---  149 (279)
T PRK12884         79 ISRREALLLAILLFILGLIAAYLISPLAFLVV-ILVSVLGILYNW-----KLKEYGLIGNLYVAFLTGMTFIFGGIA---  149 (279)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----hhccccchhHHHHHHHHHHHHHHHHHH---
Confidence            99999999999999999998888887665544 456677899998     789999889999998887433333221   


Q ss_pred             HHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhh
Q 024055          183 KYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL  252 (273)
Q Consensus       183 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~  252 (273)
                         .+.   .+...++.....++++.+.++.+|++|+|+|+++|+||+|+++|+|++++++..+...+++
T Consensus       150 ---~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~  213 (279)
T PRK12884        150 ---VGE---LNEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVL  213 (279)
T ss_pred             ---hCC---CchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHH
Confidence               121   1112333334556677788999999999999999999999999999999988777666555

>PRK13595 ubiA prenyltransferase; Provisional

Probab=100.00  E-value=2.3e-33  Score=248.97  Aligned_cols=218  Identities=19%  Similarity=0.224  Sum_probs=166.5

Q ss_pred             hHHHHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCcccc
Q 024055           21 FLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINKPDLPLAS  100 (273)
Q Consensus        21 ~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~~~Rpl~~  100 (273)
                      ....++.+++.+||.+|+.+..++.+|+..+.. ..++.+...+++++.....+.++|++|||+|+|+|++|+|+||+++
T Consensus         8 ~~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~-~~~~~~~~~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~~~i~~   86 (292)
T PRK13595          8 ILLPLRRLLLISRPALWVNTVGTLVTGVWLTGH-LYTLDPGVLPLLLYLTLPFNLLIYGLNDLADRETDAASPRKGGWQG   86 (292)
T ss_pred             hhhHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC-cccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCCCc
Confidence            456678899999999999999999999977643 2333224444667778888999999999999999999999999999


Q ss_pred             CcCCHHHHHHHHHHHHHH----HHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHH
Q 024055          101 GDFSIKTGVAITLTCAMM----SLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFS  176 (273)
Q Consensus       101 G~is~~~a~~~~~~~~~l----~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~  176 (273)
                      |++|+++++.+...+..+    ++.+++..++..+.+ ..++.+++++||.  ||+|+|+++++++++. ..+|.  +..
T Consensus        87 G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l-~~v~~~l~~~YS~--pPlRlK~rp~l~~l~~-~~~g~--p~~  160 (292)
T PRK13595         87 ARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLL-LLLYAALFVGYSL--PPLRFKARPFLDGLSN-AAYAL--PLA  160 (292)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHcc--CccchhcCcchhHHHH-HHHHH--HHH
Confidence            999999998876654443    455566667665544 3466688999999  9999999999988775 44442  222


Q ss_pred             HHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhhhc
Q 024055          177 FFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDLED  254 (273)
Q Consensus       177 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~~~  254 (273)
                      ...    .+.|.   ......+  ....+|..+++++++++|+|+||+.|+||+|+++|+|++.+++..+++++.+..
T Consensus       161 ~~~----~~~g~---~~~~~~l--~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~  229 (292)
T PRK13595        161 LPA----LALGA---PVPWPPL--LALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGALL  229 (292)
T ss_pred             HHH----HHcCC---cchHHHH--HHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHHH
Confidence            221    13332   1111122  233456789999999999999999999999999999999999999988776654

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=100.00  E-value=4.2e-33  Score=250.88  Aligned_cols=217  Identities=19%  Similarity=0.205  Sum_probs=174.6

Q ss_pred             HHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhch--hhhh--hcCCCCccc
Q 024055           24 NLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDV--KIDK--INKPDLPLA   99 (273)
Q Consensus        24 ~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~--~~D~--~n~~~Rpl~   99 (273)
                      .+|.|++++||+++..+.+++++|.++|... .++++..+++++++.++++.++|.+|||+|+  +.|+  .++|+||++
T Consensus         2 ~~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~-~~~~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~l~   80 (293)
T PRK06080          2 TFKAWLELARPKTLPAAFAPVLVGTALAYWL-GSFHPLLALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLRAIG   80 (293)
T ss_pred             CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCccccc
Confidence            3688999999999999999999999888432 3456666667788999999999999999999  4675  456899999


Q ss_pred             cCcCCHHHHHHHHHHHHHHHHHHHHH----hchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHH
Q 024055          100 SGDFSIKTGVAITLTCAMMSLAMGIM----IGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQF  175 (273)
Q Consensus       100 ~G~is~~~a~~~~~~~~~l~l~l~~~----~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l  175 (273)
                      +|++|+++++..+..+.+++++++..    .+++.+. ..+++++.+++||.  ||.++|+++ +||+.++..+|.....
T Consensus        81 ~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~-~~~~~~~~~~~Ys~--~p~~~~~~g-lge~~~~~~~G~~~~~  156 (293)
T PRK06080         81 RGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLL-LGLLCIAAAILYTG--GPKPYGYTG-LGELFVGVFFGLVIVL  156 (293)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHhhhhcC--CCCccCCCC-cHHHHHHHHHHHHHHH
Confidence            99999999999988888776665543    3443333 34566778899999  999999998 5999999999976666


Q ss_pred             HHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhh
Q 024055          176 SFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL  252 (273)
Q Consensus       176 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~  252 (273)
                      +.++. ++   +   ..++..++...+.++++.+.++.||++|+|+|+++|+||+|+++|+|++++++..++.++++
T Consensus       157 ~~~~~-~~---~---~~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~  226 (293)
T PRK06080        157 GTYYL-QA---G---TVDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYL  226 (293)
T ss_pred             HHHHH-hc---C---CCCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHH
Confidence            65542 11   2   23344455556677788889999999999999999999999999999999999999888877

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=100.00  E-value=2.2e-33  Score=250.80  Aligned_cols=208  Identities=22%  Similarity=0.289  Sum_probs=164.0

Q ss_pred             HHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCccccCcC
Q 024055           24 NLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDF  103 (273)
Q Consensus        24 ~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~~~Rpl~~G~i  103 (273)
                      ++|+|++++||+++..+.++.+.|++++.++.++  +......+++.++.++++|++|||+|+|+|+.|+|+||+++|++
T Consensus         2 ~l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~--~~~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~i   79 (277)
T PRK12883          2 ELKAFIEITRPHNCILAGIVGILGSLVALGGIPP--IKTLILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPRGAM   79 (277)
T ss_pred             CHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCCCcc
Confidence            3689999999999999999888999887544322  22233456677788889999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHHHHHHHH
Q 024055          104 SIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQK  183 (273)
Q Consensus       104 s~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~~~~  183 (273)
                      ++++++.++.++.++|+.+++.+|++.+.+. +.+...++.|+.     ++|++++++|+.++..+|..+..+.. +   
T Consensus        80 s~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~-~~~~~~~~~Y~~-----~~k~~~~lg~~~vg~~~g~~~~~g~~-a---  149 (277)
T PRK12883         80 SRKAALYYSLLLFAVGLALAYLINIEAFLFA-LGAYVLMFLYAW-----KLKPLPFIGNVVVALLTGATPIYGAI-A---  149 (277)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhh-----cccCCcchhhHHHHHHHHHHHHHHHH-H---
Confidence            9999999999999999998888887766554 455677899998     78999878999999999865543322 1   


Q ss_pred             HhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHH
Q 024055          184 YVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKN  249 (273)
Q Consensus       184 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~  249 (273)
                       . +   ..+...+.. .+.+++..++++.||++|+|+|+++|+||+|+++|+|+++++.....+.
T Consensus       150 -~-~---~~~~~~~~~-~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~~~~  209 (277)
T PRK12883        150 -V-G---RIGLAGYLA-ICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIFGVL  209 (277)
T ss_pred             -h-c---cccHHHHHH-HHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHHHHH
Confidence             1 2   122222222 2344455678899999999999999999999999999999988776443

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=3.3e-33  Score=251.15  Aligned_cols=217  Identities=16%  Similarity=0.146  Sum_probs=169.2

Q ss_pred             hHHHHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCcc
Q 024055           21 FLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINK--PDLPL   98 (273)
Q Consensus        21 ~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~--~~Rpl   98 (273)
                      .+.++|+|+|++||++......+.+.|+.+|.++.+  ++..+++..++.+++++++|++|||+|+|+|++|+  ++||+
T Consensus        11 ~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~--~~~~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~RPl   88 (300)
T PRK13106         11 TRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIP--PISTLILIFLALFFLRTAGMTNDNLADLEIDAKNPRTKNRPL   88 (300)
T ss_pred             hHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHHHHHHHHHhhHHhccccCCCccCCCCC
Confidence            566899999999999999998888889998865433  34444467788899999999999999999999984  69999


Q ss_pred             ccCcCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHHH
Q 024055           99 ASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFF  178 (273)
Q Consensus        99 ~~G~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~  178 (273)
                      ++|++|++|++.+..+..+.++.+++.+|+.+..++. .+.+....|+.      +||++.++|+.+|..+|..+..| +
T Consensus        89 ~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~~~~G-~  160 (300)
T PRK13106         89 VTGAIKISEAKALITAGLILFFASAYLVNRWALLLSP-IVALIAMSYPY------MKRYTAFANYHLASIQGLAVFSG-A  160 (300)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhH------HhcCCcchHHHHHHHHHHHHHHH-H
Confidence            9999999999999877777777777777877665543 44455677876      89999999999999988554444 3


Q ss_pred             HHHHHHhhcccc-----chhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhh
Q 024055          179 IHIQKYVLGRSV-----VITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL  252 (273)
Q Consensus       179 ~~~~~~~~g~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~  252 (273)
                      .+    +.|...     ..+...++.....++|+.+++++|+++|+|+|+|+|+||+|+++| |++++++..++.++.+
T Consensus       161 ~a----~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~  234 (300)
T PRK13106        161 VA----VLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVV  234 (300)
T ss_pred             HH----HcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHH
Confidence            32    223110     011122222334567888999999999999999999999999999 9999998888887766

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=100.00  E-value=9.6e-33  Score=248.43  Aligned_cols=219  Identities=15%  Similarity=0.078  Sum_probs=177.0

Q ss_pred             HHHHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchh--hhhhcCCCCccc
Q 024055           22 LKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVK--IDKINKPDLPLA   99 (273)
Q Consensus        22 ~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~--~D~~n~~~Rpl~   99 (273)
                      .++++.|++.+||+++..++.|+++|.++|.....++++..++++++++++.|.++|.+|||+|++  .|+. +++ ...
T Consensus         9 ~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~~-~~~   86 (304)
T PRK07419          9 PSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLDQFITFLLAAILILAWENLSNDVFDADTGIDKN-KFH-SVV   86 (304)
T ss_pred             ccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-ccc-Ccc
Confidence            467889999999999999999999999998654457888887788899999999999999999997  6773 222 234


Q ss_pred             cCcCCHHHHHHHHHHHHHHHHHHH----HHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHH
Q 024055          100 SGDFSIKTGVAITLTCAMMSLAMG----IMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQF  175 (273)
Q Consensus       100 ~G~is~~~a~~~~~~~~~l~l~l~----~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l  175 (273)
                      ++..++++....+..+.+++++++    +..|+ ..+..++++++.+++||.  ||+++|+++ +||+.++.++|.++..
T Consensus        87 ~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g~-~~l~ig~~g~~~~~~YT~--gP~~l~y~g-LGE~~v~l~~G~l~v~  162 (304)
T PRK07419         87 NLTGNKSLVFWLANLFLLLGLLGILAIALQSDW-TVLGLVLLCCFLGYLYQG--PPFRLGYQG-LGEPLCFLAFGPLAVA  162 (304)
T ss_pred             cccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcH-HHHHHHHHHHHHhheccC--CCcccCCCC-chHHHHHHHHHHHHHH
Confidence            555578998888887777666554    33354 444445678889999999  999999999 5999999999988888


Q ss_pred             HHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhhh
Q 024055          176 SFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDLE  253 (273)
Q Consensus       176 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~~  253 (273)
                      +.++. |+   +   .+++..+...+.+++.+.++++.||+||+|+|+++|+||+|+++|+|++++++..+...+++.
T Consensus       163 g~~yv-~t---~---~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~  233 (304)
T PRK07419        163 AALYS-QT---P---SWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYAL  233 (304)
T ss_pred             HHHHH-hc---C---CCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHH
Confidence            87764 22   2   344445555566777788899999999999999999999999999999999999998887774

>PLN02922 prenyltransferase

Probab=100.00  E-value=2.1e-32  Score=247.46  Aligned_cols=225  Identities=16%  Similarity=0.172  Sum_probs=174.5

Q ss_pred             HHHHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchh--hhhhcCCCCccc
Q 024055           22 LKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVK--IDKINKPDLPLA   99 (273)
Q Consensus        22 ~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~--~D~~n~~~Rpl~   99 (273)
                      .+++|.|++.+||+++..++.|+++|.++|.....++++..++++++++++.|.++|.+|||+|++  .|+.++..+.-.
T Consensus        12 ~~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~~~   91 (315)
T PLN02922         12 LSRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDARRYGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESVVNL   91 (315)
T ss_pred             ccHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCCCc
Confidence            556889999999999999999999999998654457888888788899999999999999999986  576433221122


Q ss_pred             cCcCCHHHHHHHHHHHHHHHHHHHHHh----chHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHH
Q 024055          100 SGDFSIKTGVAITLTCAMMSLAMGIMI----GSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQF  175 (273)
Q Consensus       100 ~G~is~~~a~~~~~~~~~l~l~l~~~~----~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l  175 (273)
                      .|  ++++.+..++.+.++++...+.+    +.|.+++.++++++.+++||.  ||+++||++ +||+.++.++|.++..
T Consensus        92 ~~--s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~g~~~~~~Yt~--gP~pl~y~g-LGE~~v~i~fG~l~v~  166 (315)
T PLN02922         92 VG--SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAAAILCGYVYQC--PPFRLSYKG-LGEPLCFAAFGPLATT  166 (315)
T ss_pred             cc--CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHhc--CCcccccCc-chHHHHHHHHHHHHHH
Confidence            33  89999888887777666422221    334454555688889999999  999999999 5999999999977777


Q ss_pred             HHHHHHHHHhhccc-c---chhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhh
Q 024055          176 SFFIHIQKYVLGRS-V---VITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMD  251 (273)
Q Consensus       176 ~~~~~~~~~~~g~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~  251 (273)
                      +.|.. |+...+.. .   ..++..++..+.+.+++.++++.||+||+|+|+++||||+|+++|+|+++++...++..++
T Consensus       167 g~y~~-~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y  245 (315)
T PLN02922        167 AFYLA-LASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLY  245 (315)
T ss_pred             HHHHH-hcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHH
Confidence            76664 32111110 0   1233445556677778889999999999999999999999999999999999999888777


Q ss_pred             h
Q 024055          252 L  252 (273)
Q Consensus       252 ~  252 (273)
                      +
T Consensus       246 ~  246 (315)
T PLN02922        246 S  246 (315)
T ss_pred             H
Confidence            5

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=100.00  E-value=2e-32  Score=245.18  Aligned_cols=214  Identities=15%  Similarity=0.165  Sum_probs=167.2

Q ss_pred             HHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhc--CCCCccccC
Q 024055           24 NLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKIN--KPDLPLASG  101 (273)
Q Consensus        24 ~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n--~~~Rpl~~G  101 (273)
                      ++|+|+|++||++...+......|+++|.++.+  ++..+++++++.+++++++|++|||+|+|+|++|  +|+||+++|
T Consensus         1 ~~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~~--~~~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG   78 (282)
T TIGR01475         1 KFKDILELIKFEHTVFALPFAYAGALLAAKGLP--GLKTLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSG   78 (282)
T ss_pred             CHHHHHHHHccccHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCC
Confidence            378999999999998887777778888855433  3444556778999999999999999999999998  579999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHHHHHH
Q 024055          102 DFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHI  181 (273)
Q Consensus       102 ~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~~  181 (273)
                      ++|+++++.++.++.+++++++..+|..+..++ ..+.+..+.|+.      +||++.++++..|...|..+ +.+|.+ 
T Consensus        79 ~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~-~~g~~a-  149 (282)
T TIGR01475        79 LISKKEARTMIILSLALFLSASYFLNPLAFILS-PLVLLVLIIYPY------TKRFTFLCHYVLGSTYGLAP-LAGWVA-  149 (282)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhh------HhccccccHHHHHHHHHHHH-HHHHHH-
Confidence            999999999999888888888887887665443 344556788876      89999899999888877533 344543 


Q ss_pred             HHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhh
Q 024055          182 QKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL  252 (273)
Q Consensus       182 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~  252 (273)
                         ..|. .+.....++.....++|+.+.+++||++|+|+|+++|+||+|+++|+|+++++...+..++++
T Consensus       150 ---~~g~-~~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~  216 (282)
T TIGR01475       150 ---VIGT-ISFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFI  216 (282)
T ss_pred             ---HhCC-ccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHH
Confidence               2222 110122233344566778889999999999999999999999999999999998887766655

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.8e-32  Score=246.03  Aligned_cols=215  Identities=15%  Similarity=0.124  Sum_probs=167.6

Q ss_pred             hHHHHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCcc
Q 024055           21 FLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINK--PDLPL   98 (273)
Q Consensus        21 ~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~--~~Rpl   98 (273)
                      ..+++|+|+|++||++......+...|+++|..+.++  +..+.+..++.+++++++|++|||+|+|.|++|+  ++||+
T Consensus         4 ~~~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~~--~~~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPL   81 (291)
T PRK12886          4 LLTKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLPG--ASQLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAGRAI   81 (291)
T ss_pred             hHHHHHHHHHHhCccchHHHHHHHHHHHHHhccCCCC--HHHHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCC
Confidence            4567999999999999998888888899888544333  3334466788899999999999999999999997  58999


Q ss_pred             ccCcCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHHH
Q 024055           99 ASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFF  178 (273)
Q Consensus        99 ~~G~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~  178 (273)
                      ++|++|++|+..+...+.+.++++++.+|+.+..++. ++.+..+.|+.      +||++.++++..|...+. +++++|
T Consensus        82 ~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~-~~~~~~~~Y~~------~Kr~t~~~~~~~g~~~~~-~~l~g~  153 (291)
T PRK12886         82 PAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSP-PALFFLLLYSY------CKRFTALAHVVLGFCLAL-APLGAW  153 (291)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh------hhccccccHHHHHHHHHH-HHHHHH
Confidence            9999999999998766666666666677877665543 44556788987      799998999888887653 445556


Q ss_pred             HHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhh
Q 024055          179 IHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL  252 (273)
Q Consensus       179 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~  252 (273)
                      .+    ..|   +.+...++.....++|+.+.++.++++|+|+|+++|+||+|+++|+++++++...+..++++
T Consensus       154 ~a----~~g---~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~  220 (291)
T PRK12886        154 IA----IRG---TIELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIG  220 (291)
T ss_pred             HH----HcC---CCcHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHH
Confidence            54    223   22333344444566778888899999999999999999999999999999988777666555

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=100.00  E-value=2e-32  Score=244.69  Aligned_cols=214  Identities=15%  Similarity=0.190  Sum_probs=167.9

Q ss_pred             HHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCccccC
Q 024055           24 NLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINK--PDLPLASG  101 (273)
Q Consensus        24 ~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~~G  101 (273)
                      ++|+|+|++||++.....++.+.|++++.++  ..++..+++.+++..++++++|++|||+|+|.|++|+  |+||+++|
T Consensus         1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~--~~~~~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG   78 (279)
T PRK12869          1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKH--GVSWLPLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVG   78 (279)
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCC
Confidence            4689999999999999999999999988543  2344444466778888899999999999999999987  69999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHHHHH
Q 024055          102 DFSIKTGVAITLTCAMMSLAMGIM-IGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIH  180 (273)
Q Consensus       102 ~is~~~a~~~~~~~~~l~l~l~~~-~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~  180 (273)
                      ++|++|++.++..+.++|+.++++ +++...........+..+.||.     ++||+++ .+..++...|..+++++|.+
T Consensus        79 ~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~-----~lKr~~~-~~~~v~~~~g~~~~l~g~~a  152 (279)
T PRK12869         79 LVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTI-----WLKPRTW-LNIVIGGFAGNAAALAGYAS  152 (279)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-----ccccCCh-HHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998877 7765433333344456788987     7999997 56777787887777777764


Q ss_pred             HHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhh
Q 024055          181 IQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL  252 (273)
Q Consensus       181 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~  252 (273)
                          ..|   ..+...++.....++|+.+....++++|+|+|+++|+||+|+++|+|++++....+..+..+
T Consensus       153 ----~~g---~~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~  217 (279)
T PRK12869        153 ----GTG---SLDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIP  217 (279)
T ss_pred             ----HhC---CCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHH
Confidence                123   23333344444566677777666788999999999999999999999999988777666555

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=4.6e-32  Score=243.28  Aligned_cols=214  Identities=20%  Similarity=0.244  Sum_probs=168.6

Q ss_pred             hhHHHHHHHHHhhccchhHHHHHHHHHHHHhhccc---CCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--C
Q 024055           20 GFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQN---LGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINK--P   94 (273)
Q Consensus        20 ~~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~---~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~--~   94 (273)
                      +.++++|+|+|++||++.+.+....+.|.++|...   ...+++...++++++.++++.++|++|||+|+|.|++|+  +
T Consensus         3 ~~~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~RT~   82 (291)
T PRK12874          3 KFTKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFKLLILGILAAVSARNFAMAFNRLVDRDIDKDNPRTA   82 (291)
T ss_pred             hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCC
Confidence            35668999999999999999988888888877421   112455555567788889999999999999999999997  5


Q ss_pred             CCccccCcCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHH
Q 024055           95 DLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQ  174 (273)
Q Consensus        95 ~Rpl~~G~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~  174 (273)
                      +||+++|++|++|++.++..+.++++.+++.+|+.+..+. +..+.....|+.      +||++.++++..|...|.. +
T Consensus        83 ~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~~g~~~~~~-~  154 (291)
T PRK12874         83 NRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLS-FPFLIVLGGYSY------FKRFSSLAHLVLGLSLGLA-P  154 (291)
T ss_pred             CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhh------hcccccccHHHHHHHHHHH-H
Confidence            9999999999999999999988888888887887766554 345556788987      8999989999988887744 4


Q ss_pred             HHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHH
Q 024055          175 FSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFK  248 (273)
Q Consensus       175 l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~  248 (273)
                      +.+|.+    +.|.   .+...++.....++|+.+.+.+++++|+|+|+++|++|+|+++|+|++.+....+..
T Consensus       155 l~G~~a----v~g~---~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~  221 (291)
T PRK12874        155 IAGVVA----VLGE---IPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHL  221 (291)
T ss_pred             HHHHHH----HcCC---CcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHH
Confidence            444543    2232   232223333456778889999999999999999999999999999999987655544

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=100.00  E-value=4.1e-32  Score=242.61  Aligned_cols=209  Identities=16%  Similarity=0.107  Sum_probs=170.4

Q ss_pred             ccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhh--hhh--cCCCCccccCcCCHHHH
Q 024055           33 RPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKI--DKI--NKPDLPLASGDFSIKTG  108 (273)
Q Consensus        33 Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~--D~~--n~~~Rpl~~G~is~~~a  108 (273)
                      ||+++..++.|+++|.++|.... ++++..+++++++++++|.++|..|||+|++.  |+.  .+|+|++++|.++++++
T Consensus         1 Rp~tl~~s~~pv~lG~ala~~~~-~f~~~~~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~~~v   79 (284)
T TIGR00751         1 RPKTLPLAIAPIVAGTALAAWLH-AFVWLVALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITPREV   79 (284)
T ss_pred             CCchHHHHHHHHHHHHHHHHHcC-CccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCHHHH
Confidence            89999999999999999986543 78888777888999999999999999999953  543  25789999999999999


Q ss_pred             HHHHHHHHHHHHHHHH----Hhch-----HHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHHHH
Q 024055          109 VAITLTCAMMSLAMGI----MIGS-----PPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFI  179 (273)
Q Consensus       109 ~~~~~~~~~l~l~l~~----~~~~-----~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~  179 (273)
                      +..+..+..++++++.    ..++     +.+++..+++++.+++||.  ||+++|+++ +||+.++.++|+++.++.++
T Consensus        80 ~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~--gP~~l~y~g-LGE~~v~i~~G~l~v~g~~y  156 (284)
T TIGR00751        80 KTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYTV--GSKPYGYAG-LGDISVLVFFGPLAVLGTQY  156 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhcC--CCCccccCc-hHHHHHHHHHHHHHHHHHHH
Confidence            9998887776665543    3343     1343445677788999999  999999999 59999999999888888765


Q ss_pred             HHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhh
Q 024055          180 HIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL  252 (273)
Q Consensus       180 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~  252 (273)
                      . |+    +  .+++..++..+...+++.++++.||+||+|+|+++|+||+|+++|+|+++++...++..+++
T Consensus       157 v-q~----~--~~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~  222 (284)
T TIGR00751       157 L-QA----H--RVDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGV  222 (284)
T ss_pred             H-hc----C--CCCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHH
Confidence            4 22    2  23444444455566777889999999999999999999999999999999999998887774

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=2.1e-32  Score=245.37  Aligned_cols=216  Identities=17%  Similarity=0.226  Sum_probs=170.5

Q ss_pred             hHHHHHHHHHhhccchhHH---HHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CC
Q 024055           21 FLKNLKSLYRFTRPNTLNG---LVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINK--PD   95 (273)
Q Consensus        21 ~~~~l~~~~~l~Rp~~~~~---~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~--~~   95 (273)
                      ..+++++|++++||++...   +.++.+.|.++|..+. ..++...++++++.++++.++|++|||+|+|.|++|+  ++
T Consensus         3 ~~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~-~~~~~~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~   81 (285)
T PRK12847          3 ILMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSL-LPDISLLVLFIIGSVLMRSAGCIINDIFDRKIDKHVARTKN   81 (285)
T ss_pred             hHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCcc-CCcHHHHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCcccC
Confidence            3457999999999997654   5578888998885432 2345455567788899999999999999999999765  58


Q ss_pred             CccccCcCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHH
Q 024055           96 LPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQF  175 (273)
Q Consensus        96 Rpl~~G~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l  175 (273)
                      ||+++|++|++|++.++..+.++++.+++.+|+..+.++ +++.+..+.||.      .||++.++++..|..++. .++
T Consensus        82 Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~-~~l  153 (285)
T PRK12847         82 RPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLS-FIAVILIVLYPL------MKRFFYWPQLFLGFTFNM-GIL  153 (285)
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHhccc------cccCCcccHHHHHHHHHH-HHH
Confidence            999999999999999999999999988888887666544 456667888986      888888899888887774 334


Q ss_pred             HHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhh
Q 024055          176 SFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL  252 (273)
Q Consensus       176 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~  252 (273)
                      +.|.+    ..|   +.+...++.....++|+.+.+.+++++|+|+|+++|+||+|+++|+|++.++.....+..++
T Consensus       154 ~~~~a----~~g---~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~  223 (285)
T PRK12847        154 MAFAA----VQN---QLDIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLIL  223 (285)
T ss_pred             HHHHH----HcC---CCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHH
Confidence            44543    223   23334444445667788899999999999999999999999999999999998888776666

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=7.6e-32  Score=240.51  Aligned_cols=214  Identities=13%  Similarity=0.097  Sum_probs=167.1

Q ss_pred             HHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhc--CCCCccccC
Q 024055           24 NLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKIN--KPDLPLASG  101 (273)
Q Consensus        24 ~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n--~~~Rpl~~G  101 (273)
                      ++|+|+|++||++...++...+.|+++|.++.+  ++..+++.+++.+++++++|++||+.|+|.|++|  +++||+++|
T Consensus         2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~~~--~~~~l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPLpsG   79 (286)
T PRK12895          2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGHYI--HPIKILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWALVSG   79 (286)
T ss_pred             cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCCCCC
Confidence            478999999999989888888889988854322  2323335566788999999999999999999999  469999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHHHHHH
Q 024055          102 DFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHI  181 (273)
Q Consensus       102 ~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~~  181 (273)
                      ++|++||+.+.+.+.++++.+++++|+.++.++. ..+.+...|+.      +||+++++++.+|...|. .++.+|.+ 
T Consensus        80 ~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~-~~~~l~~~yp~------~KR~t~~~~~~lG~~~g~-~~l~g~~A-  150 (286)
T PRK12895         80 RIKMREAIAFTIIFIAIFEICTFLLNRLVFILSP-IVIFLFIIDPF------LKRYTAWRHIYMGSIIGL-GVLAGYLA-  150 (286)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH------HHhCccccHHHHHHHHHh-HHHHHHHH-
Confidence            9999999999999999999888888987765543 34444455554      999999999999999984 45555654 


Q ss_pred             HHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhh
Q 024055          182 QKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL  252 (273)
Q Consensus       182 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~  252 (273)
                         +.|. ..+....++.....++|+.+.+++++++|+|+|++.|+||+|+++|+|++.+++..++.++.+
T Consensus       151 ---v~g~-~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~  217 (286)
T PRK12895        151 ---VIPA-FPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLI  217 (286)
T ss_pred             ---HcCC-CCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHH
Confidence               2232 111122233334566788999999999999999999999999999999999887666655444

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=100.00  E-value=7.9e-32  Score=242.77  Aligned_cols=216  Identities=17%  Similarity=0.147  Sum_probs=167.7

Q ss_pred             HHHHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCccc
Q 024055           22 LKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINK--PDLPLA   99 (273)
Q Consensus        22 ~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~   99 (273)
                      +.++|+|++++||+++....++...|+++|.++  .+++..+++++++.++++.++|++|||+|+|.|++|+  |+||++
T Consensus         7 ~~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~--~~~~~~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~   84 (296)
T PRK04375          7 RATLKDYLALTKPRVISLNLFTALGGMLLAPPG--VPPLLLLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNRPLV   84 (296)
T ss_pred             hhhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCCCCC
Confidence            346899999999999999999999999998543  2344445567788899999999999999999999987  699999


Q ss_pred             cCcCCHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHHH
Q 024055          100 SGDFSIKTGVAITLTCAMMSLAMGIM-IGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFF  178 (273)
Q Consensus       100 ~G~is~~~a~~~~~~~~~l~l~l~~~-~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~  178 (273)
                      +|++|++|++.++..+.++|+++++. .++....+.....+...+.|+.     ++||++. ++..++...|..+++.+|
T Consensus        85 sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~-----~lKr~~~-~~~~v~~~~g~~~~l~g~  158 (296)
T PRK04375         85 TGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTL-----WLKRRTP-QNIVIGGAAGAMPPLIGW  158 (296)
T ss_pred             CCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc-----chhcCCc-cchHHHHHHHHhHHHHHH
Confidence            99999999999999999999988755 4655544332222234668987     7999995 677777777755656656


Q ss_pred             HHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhh
Q 024055          179 IHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL  252 (273)
Q Consensus       179 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~  252 (273)
                      .+    ..|   ..+...++.....++|+...+..++++|+|+|+++|+||+|+++|+|++++.+....++...
T Consensus       159 ~a----~~g---~~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~  225 (296)
T PRK04375        159 AA----VTG---SLSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVA  225 (296)
T ss_pred             HH----hCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHHH
Confidence            53    223   23333444445666777778888889999999999999999999999999877776665544

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=100.00  E-value=2e-31  Score=235.37  Aligned_cols=220  Identities=16%  Similarity=0.127  Sum_probs=176.5

Q ss_pred             HHHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchh--hhhh----cCCCC
Q 024055           23 KNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVK--IDKI----NKPDL   96 (273)
Q Consensus        23 ~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~--~D~~----n~~~R   96 (273)
                      .+.+.|++++||+++..++.|++.|.++|.+....++++.+++.++++++++..+|..|||+|++  .|..    .+.++
T Consensus         6 ~~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~~~g   85 (303)
T COG1575           6 SKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNLLVALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLKQSG   85 (303)
T ss_pred             HHHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCccccccc
Confidence            45689999999999999999999999999766556888888888999999999999999999996  4642    22345


Q ss_pred             ccccCcCCHHHHHHHHHHHHHHHHHHH----HHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhh
Q 024055           97 PLASGDFSIKTGVAITLTCAMMSLAMG----IMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVG  172 (273)
Q Consensus        97 pl~~G~is~~~a~~~~~~~~~l~l~l~----~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~  172 (273)
                      -+...+++++..+...+.+...+.+++    ...++ .+++.++++.+.+++|+.  +|+++++.| +||+.++.++|.+
T Consensus        86 ~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~-~~l~lG~l~~~~g~~YTg--Gp~PlgY~g-LGEi~~~vffG~l  161 (303)
T COG1575          86 LIVRQSMKPALILSLALFLLAGLALLGVILAALSDW-LVLLLGLLCIAAGILYTG--GPFPLGYMG-LGEIFVGVFFGPL  161 (303)
T ss_pred             eeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHheeeecc--CCcCcccCC-HHHHHHHHHHHHH
Confidence            556667777777777766655444443    33344 455556788899999999  999999999 5999999999987


Q ss_pred             HHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhh
Q 024055          173 IQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL  252 (273)
Q Consensus       173 ~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~  252 (273)
                      .+.+.|+. |+    +  ..++..+...+.+.+.+.+++..||+||+|+|+|+||+|+|+++|+++++++...++..+++
T Consensus       162 ~v~g~~yi-qt----~--~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l  234 (303)
T COG1575         162 IVLGAYYI-QT----G--RLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYL  234 (303)
T ss_pred             HHHHHHHH-hc----c--cchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHH
Confidence            77777653 32    2  34555566666777777889999999999999999999999999999999999999888877


Q ss_pred             h
Q 024055          253 E  253 (273)
Q Consensus       253 ~  253 (273)
                      .
T Consensus       235 ~  235 (303)
T COG1575         235 A  235 (303)
T ss_pred             H
Confidence            4

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=100.00  E-value=2.6e-31  Score=237.60  Aligned_cols=213  Identities=13%  Similarity=0.038  Sum_probs=169.5

Q ss_pred             HHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhh--hhhcCCCCccccCcCCH
Q 024055           28 LYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKI--DKINKPDLPLASGDFSI  105 (273)
Q Consensus        28 ~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~--D~~n~~~Rpl~~G~is~  105 (273)
                      |++.+||+++..++.|+++|.++|....+++++..++++++++++.|.++|.+|||+|++.  |+.+.  ....++..++
T Consensus         2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~~~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~--~~~~~~~~~~   79 (285)
T TIGR02235         2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLDRFALFLIAAILILAWINLTNDVFDSDTGIDRFKL--HSIVNLTGSR   79 (285)
T ss_pred             hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccc--CCcccccCcH
Confidence            6789999999999999999999986544578888887888999999999999999999975  76422  1222333457


Q ss_pred             HHHHHHHHHHHHHHHHHH----HHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHHHHHH
Q 024055          106 KTGVAITLTCAMMSLAMG----IMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHI  181 (273)
Q Consensus       106 ~~a~~~~~~~~~l~l~l~----~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~~  181 (273)
                      ++....+..+..+++..+    +..+ |..+..+.++++.+++||.  ||+++|+++ +||+.++.++|.++..+.++. 
T Consensus        80 ~~v~~~~~~~~~ia~~~g~~L~~~~~-~~~l~lg~~g~~~~~~Yt~--gP~~l~y~g-LGE~~v~l~~G~l~v~g~~yv-  154 (285)
T TIGR02235        80 SLVFWLANFFLLIGLVGIAALSWRWQ-ITVLALVGLCCFLGYLYQG--PPFRLGYQG-LGEPICWLCFGPLAIAAALYA-  154 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhhcC--CCcccCCCC-ccHHHHHHHHHHHHHHHHHHH-
Confidence            888877777766665544    3334 4444445678889999999  999999999 599999999998777777654 


Q ss_pred             HHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhhh
Q 024055          182 QKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDLE  253 (273)
Q Consensus       182 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~~  253 (273)
                      |+    +  .+++..++..+..++.+.++++.||+||+|+|+++|+||+|+++|+|+++++...++..+++.
T Consensus       155 qt----~--~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~  220 (285)
T TIGR02235       155 QS----Q--SFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVV  220 (285)
T ss_pred             hC----C--cCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHH
Confidence            22    2  345555666667777888899999999999999999999999999999999999998877773

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=4.6e-32  Score=243.43  Aligned_cols=212  Identities=16%  Similarity=0.166  Sum_probs=165.9

Q ss_pred             hHHHHHHHHHhhccchhHHHH---HHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC-C-C
Q 024055           21 FLKNLKSLYRFTRPNTLNGLV---IAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINK-P-D   95 (273)
Q Consensus        21 ~~~~l~~~~~l~Rp~~~~~~~---~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~-~-~   95 (273)
                      .+.++++|++++||++.....   ++.+.|.++|.++.+  ++..+++.+++.+++++++|++|||+|+|.|+.++ + +
T Consensus         5 ~~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~~--~~~~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt~~   82 (290)
T PRK12870          5 LEPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGLP--PLPLVGIIILGALATSAAGCVVNDLWDRDIDPQVERTRF   82 (290)
T ss_pred             cchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCcccC
Confidence            456789999999998866554   688888888855433  34444466788889999999999999999998754 3 8


Q ss_pred             CccccCcCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHH
Q 024055           96 LPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQF  175 (273)
Q Consensus        96 Rpl~~G~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l  175 (273)
                      ||+++|++|++|+..++..+.++++.+++.+++.++.++. .+.+..+.|+.      .||++.++++..|..+|. .++
T Consensus        83 RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~-~~l  154 (290)
T PRK12870         83 RPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLCV-AAVPVIFLYPL------AKRVFPVPQLVLAIAWGF-AVL  154 (290)
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHhhh------hhhccccceeeehHHHHh-HHH
Confidence            9999999999999999999999999998888887665543 45566788886      788888899888888774 345


Q ss_pred             HHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHH
Q 024055          176 SFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKN  249 (273)
Q Consensus       176 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~  249 (273)
                      +.|.+    ..|   ..+...++.....++|+.+.+++++++|+|+|+++|+||+|+++|+|++.+++....+.
T Consensus       155 ~g~~a----~~g---~~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~~~~~  221 (290)
T PRK12870        155 ISWSA----VTG---HLDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLFFALT  221 (290)
T ss_pred             HHHHH----HcC---CCCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHHHHHHH
Confidence            55543    223   23333344445667788999999999999999999999999999999999887754433

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=4e-31  Score=236.48  Aligned_cols=214  Identities=14%  Similarity=0.100  Sum_probs=162.9

Q ss_pred             HHHHHHHhhccchhHHHHHHHHHHHHhhcc-cCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCcccc
Q 024055           24 NLKSLYRFTRPNTLNGLVIAVTSICCLPLQ-NLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINK--PDLPLAS  100 (273)
Q Consensus        24 ~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~~  100 (273)
                      ++|+++++.||++.+.+....+.|.+.+.. ....+++..+++..++.+++++++|++|||+|+|.|++|+  ++||+++
T Consensus         1 ~~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~s   80 (284)
T PRK12888          1 RVRAFLRLVAIEHSVFALPFAYIAALTAMFASDGSVHWADLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGRELVT   80 (284)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCCCC
Confidence            368999999998877765444445544421 0122345455567789999999999999999999999997  6999999


Q ss_pred             CcCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHHHHH
Q 024055          101 GDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIH  180 (273)
Q Consensus       101 G~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~  180 (273)
                      |++|++|++.++..+..+++.++..+|+.++.++ .++++..+.|+.      .||++.++++..|...+. .++++|.+
T Consensus        81 G~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~t~~~~~~lg~~~~~-~~l~g~~a  152 (284)
T PRK12888         81 GAVSVRTAWTGALVALAVFLGAAALLNPLCLALA-PLAVAPLVVYPY------AKRFTNFPHAILGLAQAV-GPVGAWIA  152 (284)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH------hhcccchhhHHHHHHHHH-HHHHHHHH
Confidence            9999999999998888888888777787666544 344455678876      899998999998888664 34455554


Q ss_pred             HHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhh
Q 024055          181 IQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL  252 (273)
Q Consensus       181 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~  252 (273)
                          ..|.   .++..++..+..++|+.+.+++|+++|+|+|+++|+||+|+++|+|++.+++..+..++++
T Consensus       153 ----~~g~---~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~  217 (284)
T PRK12888        153 ----VTGT---WSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFA  217 (284)
T ss_pred             ----HcCC---CCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHH
Confidence                2232   3333344445667788899999999999999999999999999999999877776655554

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=6e-31  Score=238.32  Aligned_cols=217  Identities=18%  Similarity=0.173  Sum_probs=168.9

Q ss_pred             hHHHHHHHHHhh---ccchhHHHHHHHHHHHHhhcccC---CCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC-
Q 024055           21 FLKNLKSLYRFT---RPNTLNGLVIAVTSICCLPLQNL---GDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINK-   93 (273)
Q Consensus        21 ~~~~l~~~~~l~---Rp~~~~~~~~~~~~g~~la~~~~---~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~-   93 (273)
                      .++++++|++++   ||++.....++.+.|.++|....   ...++..+++++++.+++++++|++|||+|+|.|+.++ 
T Consensus        26 ~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~R  105 (314)
T PRK12878         26 LPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLWHLFLFFVGAIAMRGAGCTYNDIVDRDIDAKVAR  105 (314)
T ss_pred             cchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Confidence            557899999999   99999999999999999985431   13454445577889999999999999999999998765 


Q ss_pred             -CCCccccCcCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhh
Q 024055           94 -PDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVG  172 (273)
Q Consensus        94 -~~Rpl~~G~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~  172 (273)
                       ++||+++|++|++|++.+..++.++|+.+.+..|++.+.++ +++++..+.|+.      .||+..+++...|+..+..
T Consensus       106 t~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~~Gl~~~~~  178 (314)
T PRK12878        106 TRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALG-IASLAIVAAYPF------MKRITWWPQFFLGLAFSWG  178 (314)
T ss_pred             CCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH------HHhcCCcchHHHHHHHHHH
Confidence             48999999999999999999999999988887787666554 466667889986      8998877887777765533


Q ss_pred             HHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhh
Q 024055          173 IQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL  252 (273)
Q Consensus       173 ~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~  252 (273)
                      +..+ |.+    ..|   +.++..++.....++|+...+.+++++|+|+|+++|+||+|+++|++++++++....+...+
T Consensus       179 ~l~g-~~a----~~g---~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~  250 (314)
T PRK12878        179 ALMG-WAA----HFG---SLSLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFYGLAVLL  250 (314)
T ss_pred             HHHH-HHH----HhC---CCchHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHHHHHHHHH
Confidence            3333 543    223   23333333334556678888999999999999999999999999999999988655554433

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=99.98  E-value=2.7e-31  Score=237.68  Aligned_cols=217  Identities=20%  Similarity=0.199  Sum_probs=164.1

Q ss_pred             HHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCccccCcC
Q 024055           26 KSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINK--PDLPLASGDF  103 (273)
Q Consensus        26 ~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~~G~i  103 (273)
                      |+|++++||+++..+.+++..|+++|.... +.++..++++.++.+++++++|++|||+|+|.|++|+  |+||+++|++
T Consensus         1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~-~~~~~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~i   79 (280)
T TIGR01473         1 KDYLQLTKPRIISLLLITAFAGMWLAPGGA-LVNPPLLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRI   79 (280)
T ss_pred             CchHHHccHHHHHHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCc
Confidence            468999999999999999999999985432 2455555567788999999999999999999999876  6999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHH-HHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHHHHHH
Q 024055          104 SIKTGVAITLTCAMMSLAMG-IMIGSPPLAWGLILWFI-LVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHI  181 (273)
Q Consensus       104 s~~~a~~~~~~~~~l~l~l~-~~~~~~~~~~~~~~~~~-~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~~  181 (273)
                      |++++..+++.+.++|+.+. +..|+....++ .++.+ ..+.||.     .+||++.. +..++...|..+++++|.+ 
T Consensus        80 s~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~-~~~~~~~~~~Yt~-----~lKr~~~~-~~~v~~~~g~~~~l~g~~a-  151 (280)
T TIGR01473        80 SPREALAFGLLLGVLGVAILAAFVNPLAALLG-LFGIFFYVIVYTI-----WLKRRTPQ-NTVIGGFAGAVPPLIGWAA-  151 (280)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHhhcCh-----hhccCCch-hHHHHHHHHHHHHHHHHHH-
Confidence            99999999999999998844 44676655443 34443 3788996     58999975 5566667777777777764 


Q ss_pred             HHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhhhccCCCC
Q 024055          182 QKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDLEDESPLP  259 (273)
Q Consensus       182 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~~~~~~~~  259 (273)
                         ..|   ..+...++.....++|+.......+.+|+|+|+++|+||+|+++|+|++.+......+....  .+++|
T Consensus       152 ---~~g---~~~~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~--~~~~~  221 (280)
T TIGR01473       152 ---VTG---SISLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLP--VSLLL  221 (280)
T ss_pred             ---hcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHH--HHHHH
Confidence               113   23333333334455566555555668999999999999999999999999887777666555  44443

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=99.98  E-value=3.5e-31  Score=237.94  Aligned_cols=213  Identities=22%  Similarity=0.321  Sum_probs=170.7

Q ss_pred             HHHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCC--CCcccc
Q 024055           23 KNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINKP--DLPLAS  100 (273)
Q Consensus        23 ~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~~--~Rpl~~  100 (273)
                      ..++.++|..||.++.....+...|..++...+++  .....+.++++++++.++|++||+.|+|+|++|+|  +||+++
T Consensus        11 ~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~~~~~--~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~s   88 (289)
T COG0382          11 KALLKLLRLDRPIFNLLLLLPALLGLLLAASGLPS--LKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPS   88 (289)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCch--HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCC
Confidence            44566677777777777777888888777533333  33444677888899999999999999999999998  999999


Q ss_pred             CcCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHHHHH
Q 024055          101 GDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIH  180 (273)
Q Consensus       101 G~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~  180 (273)
                      |++|+++++.+.+++.++++.+++.+++..+.+. ..+.++.+.| .     ++||.++++++++|..+|..+..|... 
T Consensus        89 G~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~-~~~~~l~~~Y-~-----~~Kr~~~~~~~~lg~~~~~~~~~g~~a-  160 (289)
T COG0382          89 GRVSVKEALLLAILLLLLGLALALLLNPLAFLLS-LAALVLALAY-P-----FLKRFTFLPQLVLGLAFGLGALAGAAA-  160 (289)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHH-H-----HhhcCCchHHHHHHHHHHHHHHHHHHH-
Confidence            9999999999999999999999999998776554 4677788999 4     599999999999999998555444322 


Q ss_pred             HHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhh
Q 024055          181 IQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL  252 (273)
Q Consensus       181 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~  252 (273)
                          ..+   +.+...++..+...+|+.+++++++++|+|+|++.|+||+|+.+|+|++..++......+.+
T Consensus       161 ----~~~---~~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~~~~~~  225 (289)
T COG0382         161 ----VGG---SLPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLLLASAL  225 (289)
T ss_pred             ----HhC---ccchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHHHHHHH
Confidence                222   12333344445667788999999999999999999999999999999999999998865554

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=99.98  E-value=5e-31  Score=236.10  Aligned_cols=214  Identities=20%  Similarity=0.212  Sum_probs=162.5

Q ss_pred             HHHHHHHHHhhccchhH---HHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCC
Q 024055           22 LKNLKSLYRFTRPNTLN---GLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINK--PDL   96 (273)
Q Consensus        22 ~~~l~~~~~l~Rp~~~~---~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~--~~R   96 (273)
                      ++++++|++++|+++..   ...+|.+.|..+|..+.++  +..+++.+++.+++++++|++|||+|+|.|++++  ++|
T Consensus         2 ~~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~~--~~~~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~R   79 (282)
T PRK12848          2 QNRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIPD--LWVLVVFVLGVFLMRAAGCVINDYADRDFDGHVKRTKNR   79 (282)
T ss_pred             chhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCCCCC
Confidence            35689999999876554   4446777788887544333  3334456678889999999999999999998765  489


Q ss_pred             ccccCcCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHH
Q 024055           97 PLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFS  176 (273)
Q Consensus        97 pl~~G~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~  176 (273)
                      |+++|++|++|++.++..+.++++.+++.+++....++ ..+.+..+.|+.      .||++.++++..|+..|..+.. 
T Consensus        80 Pl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~g~~~~~-  151 (282)
T PRK12848         80 PLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLS-VAALALAWIYPF------MKRYTHLPQVVLGAAFGWGIPM-  151 (282)
T ss_pred             CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHh------HHhcCcccHHHHHHHHHHHHHH-
Confidence            99999999999999999999999988888887666554 455566788865      7888888998888888754433 


Q ss_pred             HHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhh
Q 024055          177 FFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL  252 (273)
Q Consensus       177 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~  252 (273)
                      +|.+    ..+   ..+...++.....++|+.+.++.++++|+|+|+++|+||+|+++|+|++.+......+...+
T Consensus       152 g~~a----~~~---~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~  220 (282)
T PRK12848        152 AFAA----VQG---SVPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQLATLAL  220 (282)
T ss_pred             HHHH----HhC---CCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHHHHHHHHHH
Confidence            4443    122   23333344444566778888999999999999999999999999999998887655554444

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=99.97  E-value=1.5e-30  Score=234.89  Aligned_cols=222  Identities=16%  Similarity=0.228  Sum_probs=166.4

Q ss_pred             hHHHHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCcc
Q 024055           21 FLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINK--PDLPL   98 (273)
Q Consensus        21 ~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~--~~Rpl   98 (273)
                      .++++|+|++++||+++..+.++.+.|++++..+  +.++...+.++++..+.++++|++|||+|+|.|+.++  ++||+
T Consensus         9 ~~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~~--~~~~~~~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPl   86 (306)
T PRK13362          9 WEASLKDYIQVTKPGIIFGNVISVAGGFFLASKG--HVDPVLMLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNRVT   86 (306)
T ss_pred             HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC--CCCHHHHHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCCCC
Confidence            3556899999999999999999999999998433  2344444456678888899999999999999999764  58999


Q ss_pred             ccCcCCHHHHHHHHHHHHHHHHHHHH-HhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHH
Q 024055           99 ASGDFSIKTGVAITLTCAMMSLAMGI-MIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSF  177 (273)
Q Consensus        99 ~~G~is~~~a~~~~~~~~~l~l~l~~-~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~  177 (273)
                      ++|++|+++|+.+++.+..+|+.++. ..|.....+..+..+...+.||.     ++||++.++++..+.. |.++++.+
T Consensus        87 psG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~-----~lKr~t~~~~~vgg~~-ga~p~l~G  160 (306)
T PRK13362         87 VTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSL-----YLKRNSVYGTLVGSLS-GAMPPVVG  160 (306)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH-----HHhccCcHhHHHHHHH-HHHHHHHH
Confidence            99999999999999999999988654 45655443332222335678986     6999998887655554 44566666


Q ss_pred             HHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhhhccCC
Q 024055          178 FIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDLEDESP  257 (273)
Q Consensus       178 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~~~~~~  257 (273)
                      |.+    ..|   +.+...++....+++|+.+.....+++|+|+|+++|+||+|+++|+|++++.......+...  .|+
T Consensus       161 ~~a----~~g---~~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~~~~~~~~~--~s~  231 (306)
T PRK13362        161 YCA----VTG---QFDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHIVLYILVFAL--VTA  231 (306)
T ss_pred             HHH----HcC---CCcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHHHHHHHHHHH--HHH
Confidence            654    223   23333444445667788887888889999999999999999999999999876666555444  444


Q ss_pred             CC
Q 024055          258 LP  259 (273)
Q Consensus       258 ~~  259 (273)
                      +|
T Consensus       232 l~  233 (306)
T PRK13362        232 LL  233 (306)
T ss_pred             HH
Confidence            44

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=4.3e-30  Score=228.69  Aligned_cols=216  Identities=20%  Similarity=0.234  Sum_probs=149.9

Q ss_pred             HHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCccccCcCC
Q 024055           25 LKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFS  104 (273)
Q Consensus        25 l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~~~Rpl~~G~is  104 (273)
                      +|.+++++||.+|+.+.+|+..|+.+| ++.++  +..++.++......+.+.|++|||+|+|.|+.|++++.. +|.++
T Consensus         1 ~~~~~~~~rP~~wi~~a~pf~~g~~la-~~~~~--~~~l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~g~i~   76 (282)
T PRK13105          1 IRQLLLSSRPISWINTAYPFAAAYLLA-GGEID--WLFVVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-EGAVL   76 (282)
T ss_pred             ChhHHHhcccHHHhccHHHHHHHHHHH-CCCCC--hHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-CCccC
Confidence            368899999999999999999999999 43333  322211211222333343456999999999999764332 58899


Q ss_pred             HHHHHHHHHHHHHHHHH----HHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHHHHH
Q 024055          105 IKTGVAITLTCAMMSLA----MGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIH  180 (273)
Q Consensus       105 ~~~a~~~~~~~~~l~l~----l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~  180 (273)
                      ++|..........++.+    .....+++.......++++.++.||.  ||.|+|++++.++++.+..+......|.+. 
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~~~ai~~~~~YS~--~p~rlk~~gl~d~~t~~~~f~~~~v~G~~~-  153 (282)
T PRK13105         77 DRAMHRTTLWASVVTTVPFLVVLLAVGSWASGLVLAVSVFAVVAYSA--PGLRFKERPFLDSLTSSTHFVSPALYGLVL-  153 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcC--CCccccccchHHHHHHHHHHHHHHHHHHHH-
Confidence            99885554444433322    12233233343444577788999999  999999999877765544433223344332 


Q ss_pred             HHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhhhc
Q 024055          181 IQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDLED  254 (273)
Q Consensus       181 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~~~  254 (273)
                          + ++  ..++..++....+++++.+++++||+||+|+||++|+||+|+++|+|++.+++..++.++++..
T Consensus       154 ----~-~~--~~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~  220 (282)
T PRK13105        154 ----A-GA--PFTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLM  220 (282)
T ss_pred             ----h-hc--cccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHH
Confidence                2 32  2333344555567778889999999999999999999999999999999999999999887643

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=99.97  E-value=3.4e-30  Score=230.56  Aligned_cols=208  Identities=18%  Similarity=0.179  Sum_probs=154.7

Q ss_pred             HHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCccccCcCCH
Q 024055           28 LYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINK--PDLPLASGDFSI  105 (273)
Q Consensus        28 ~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~~G~is~  105 (273)
                      +.|+.||..+....++...|+.+|.......++..+.+..++.++++.++|++|||+|+|.|+.|+  |+||+++|++|+
T Consensus         7 l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~   86 (281)
T TIGR01474         7 LMRADKPIGTLLLLWPCLWSLLLAAQAGGIPPLYLLGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAVSV   86 (281)
T ss_pred             HHccccHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCCCCcCH
Confidence            344445555566677888898888541111133334456678888999999999999999999764  489999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 024055          106 KTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYV  185 (273)
Q Consensus       106 ~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~~~~~~  185 (273)
                      +|++.++.++.++++.+++.+|+....++ +++++..+.|+.      .||++.++++..|...+..+..+ |.+    .
T Consensus        87 ~~a~~~~~~~~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g-~~a----~  154 (281)
T TIGR01474        87 RQAILFLLVQLLVALGVLLQLNPLTILLG-VASLALVATYPF------MKRITYWPQLVLGLAFGWGALMG-WAA----V  154 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHhch------hcccccccHHHHHHHHHHHHHHH-HHH----H
Confidence            99999999999999999888887766554 466677899986      89998889988888776434344 443    2


Q ss_pred             hccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHh
Q 024055          186 LGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNM  250 (273)
Q Consensus       186 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~  250 (273)
                      .|   +.++..++.....++|+.+.+.+++++|+|+|+++|+||+|+++|+|++++......+..
T Consensus       155 ~g---~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~  216 (281)
T TIGR01474       155 TG---DLSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGGLYALMI  216 (281)
T ss_pred             cC---CCcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHHHHHHHH
Confidence            23   233333333345667788899999999999999999999999999999766655544433

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=99.97  E-value=3.7e-29  Score=224.11  Aligned_cols=206  Identities=18%  Similarity=0.209  Sum_probs=155.4

Q ss_pred             HHHHHHHHHhhccchhHHH---HHHHHHHHHhhc--ccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--C
Q 024055           22 LKNLKSLYRFTRPNTLNGL---VIAVTSICCLPL--QNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINK--P   94 (273)
Q Consensus        22 ~~~l~~~~~l~Rp~~~~~~---~~~~~~g~~la~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~--~   94 (273)
                      ++++++|+|++|.++....   .+|...|..++.  ++.+  ++..+++..++.+++++++|++||++|+|+|++|+  |
T Consensus         3 ~~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~--~~~~l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~   80 (289)
T PLN02809          3 PPSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLP--DLKMLALFGCGALLLRGAGCTINDLLDRDIDKKVERTK   80 (289)
T ss_pred             chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCC--cHHHHHHHHHHHHHHHHHHHHHHhhHHhccccCCCCCC
Confidence            3578889999888775544   456666766654  2223  33334466788899999999999999999999875  5


Q ss_pred             CCccccCcCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHH
Q 024055           95 DLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQ  174 (273)
Q Consensus        95 ~Rpl~~G~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~  174 (273)
                      +||+++|++|++|++.+...+.++++.+++.+|+..+.++ .++++..+.|+.      +||++.++++..|...+..+ 
T Consensus        81 ~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~~-  152 (289)
T PLN02809         81 LRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILG-ASSLLLVFTYPL------MKRFTFWPQAFLGLTFNWGA-  152 (289)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhH------HHhcCcchHHHHHHHHHHHH-
Confidence            9999999999999999999999999999888887666554 355666788986      99999999988888766433 


Q ss_pred             HHHHHHHHHHhhccccchhhHHHH-HHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHH
Q 024055          175 FSFFIHIQKYVLGRSVVITRSLIF-TTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELL  244 (273)
Q Consensus       175 l~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~  244 (273)
                      +..|.+    +.|.   .++..+. ......+|+.+.+.+++++|+|+|+++|+||+|+++|+|+..+++.
T Consensus       153 l~g~~a----v~g~---~~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~~  216 (289)
T PLN02809        153 LLGWAA----VKGS---LDPAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTG  216 (289)
T ss_pred             HHHHHH----HhCC---CChHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHHH
Confidence            444543    2332   2222222 2334556778889999999999999999999999999997777664

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=1.4e-28  Score=219.77  Aligned_cols=215  Identities=14%  Similarity=0.143  Sum_probs=158.5

Q ss_pred             HHHHHHHHhhccchhHHHHHHHHHHHHhhc------cc-CCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--
Q 024055           23 KNLKSLYRFTRPNTLNGLVIAVTSICCLPL------QN-LGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINK--   93 (273)
Q Consensus        23 ~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~------~~-~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~--   93 (273)
                      +++|.+.++.|..+.+-++--...|+++|.      ++ +...++..+++..++.+.+..++|++||+.|+|.|++|+  
T Consensus         2 ~~~~~~~~~i~~~ht~Falpfa~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~~RT   81 (300)
T PRK12876          2 MRIKYFQQLINCKYALFSALFLSASTVFALSLPEISFSLFSLGGIKTISLGGSAFFCARTVGIIVNQIIDCAIDKKNPRT   81 (300)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCCC
Confidence            358899999999664433322345777774      22 001234445567788999999999999999999999998  


Q ss_pred             CCCccccCcCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhH
Q 024055           94 PDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGI  173 (273)
Q Consensus        94 ~~Rpl~~G~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~  173 (273)
                      ++||+++|++|++||+.+...+.++++++++.+|+.+..++. ++++..+.|+.      +||+++++++..|...+. .
T Consensus        82 ~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~-~~~~~~~iY~~------~KR~t~~~~~vLGl~~~~-~  153 (300)
T PRK12876         82 SSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAV-LSTLLMIIYPY------TKRVTFLCHWILGLVYYL-A  153 (300)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHh------HhcCCchhHHHHHHHHHH-H
Confidence            599999999999999999987777778888888987776654 55566688986      999999999988887774 3


Q ss_pred             HHHHHHHHHHHhhccccchhhHH----HHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHH
Q 024055          174 QFSFFIHIQKYVLGRSVVITRSL----IFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKN  249 (273)
Q Consensus       174 ~l~~~~~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~  249 (273)
                      +++.|.+    +.+..  .++..    ++.....++|..+.+++++++|+|+|++.|+||+|+++|++++.+++..++.+
T Consensus       154 ~l~~~~A----v~~~~--~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l  227 (300)
T PRK12876        154 ILMNFFA----IIETP--LSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIA  227 (300)
T ss_pred             HHHHHHH----HhcCc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHH
Confidence            4444543    22321  12211    11123344566789999999999999999999999999999987777655554


Q ss_pred             hh
Q 024055          250 MD  251 (273)
Q Consensus       250 ~~  251 (273)
                      +.
T Consensus       228 ~~  229 (300)
T PRK12876        228 SA  229 (300)
T ss_pred             HH
Confidence            33

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.96  E-value=5.3e-28  Score=215.70  Aligned_cols=214  Identities=17%  Similarity=0.216  Sum_probs=138.6

Q ss_pred             hHHHHHHHHHhhccchhHHHHHHHHHHHHhhcccCCC-CcHHHHHHHHHHH--HHHHHHHhhhhhhhchhhhhhcCCCCc
Q 024055           21 FLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGD-LTPTFFMETVVPA--ALMAIYMTAINQLVDVKIDKINKPDLP   97 (273)
Q Consensus        21 ~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~-~~~~~~~l~~l~~--~~~~~~~~~~Nd~~D~~~D~~n~~~Rp   97 (273)
                      ...++|.+++++||+++..+..|++.|.++|..+.++ +++..  +++++.  +..+.+.+.+|||+|+|+|+.|++++.
T Consensus         4 ~~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~~--~~ll~~~~i~~Nl~~y~iND~~D~D~Dr~~prk~~   81 (282)
T PRK12875          4 LGDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPAA--VALFAYFLFPANVFLYGVNDVFDADTDELNPKKDR   81 (282)
T ss_pred             hHHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHHH--HHHHHHHHHHHHHHHhcchhhhhhhccccCCCccC
Confidence            3567889999999999999999999999998654322 33322  222222  233445556899999999999977654


Q ss_pred             cccCcCC--HHHHHHHHH-HHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHH
Q 024055           98 LASGDFS--IKTGVAITL-TCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQ  174 (273)
Q Consensus        98 l~~G~is--~~~a~~~~~-~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~  174 (273)
                        .+.+.  .+.+..... ....+++.+.+..++... +..+.+++.++.||.  ||+|+|++++.+..+.+...  ++.
T Consensus        82 --~r~~~~s~~~~~~~~~~l~~~l~l~l~~~~~~~~~-~~ll~~i~~~~~YS~--pP~rlk~~p~~~~~~~g~~~--~~~  154 (282)
T PRK12875         82 --EREVRYRGDRRVLVAVALSGALALAFLLVLPPAAW-PALLAFLVLSVEYSA--PPLRFKTTPVLDSLSNGLYI--LPG  154 (282)
T ss_pred             --CCCccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHcC--CCccchhccHHHHHHHHHHH--HHH
Confidence              12122  122222111 122333333333343222 223455678999999  99999999975543333321  233


Q ss_pred             HHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhh
Q 024055          175 FSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL  252 (273)
Q Consensus       175 l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~  252 (273)
                      ++.|.. +   .|   +.++..++.  ..++++.+++++||++|+|+|+++|+||+|+++|+|++++++..+++++.+
T Consensus       155 ~~~y~~-~---tg---~~~~~~l~~--a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~  223 (282)
T PRK12875        155 VAAYAL-V---SG---SLPPLLAVA--GGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAA  223 (282)
T ss_pred             HHHHHH-H---cC---CCcHHHHHH--HHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHH
Confidence            444442 1   12   234333332  235677889999999999999999999999999999999988888776554

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=99.96  E-value=1.2e-27  Score=213.87  Aligned_cols=212  Identities=17%  Similarity=0.155  Sum_probs=155.3

Q ss_pred             HHHHHHHHHhhccchhHHH---HHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCC
Q 024055           22 LKNLKSLYRFTRPNTLNGL---VIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINK--PDL   96 (273)
Q Consensus        22 ~~~l~~~~~l~Rp~~~~~~---~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~--~~R   96 (273)
                      ++++++|+|++||+++..+   .++.+.|.+++..+.+  ++...+..+++..++.+++|++||+.|+|+|++|+  ++|
T Consensus         4 ~~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~~--~~~~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~R   81 (294)
T PRK12873          4 SIKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAPP--SLLLLLLIILGGLAVSGAGCIANDLWDRRIDRKVERTKNR   81 (294)
T ss_pred             hHhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCCC
Confidence            3468899999888776655   4566678777644322  34344467788889999999999999999999876  499


Q ss_pred             ccccCcCCHHHHHHHHHHHHHHHHHHHHHh----chHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhh
Q 024055           97 PLASGDFSIKTGVAITLTCAMMSLAMGIMI----GSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVG  172 (273)
Q Consensus        97 pl~~G~is~~~a~~~~~~~~~l~l~l~~~~----~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~  172 (273)
                      |+++|++|++||+.+..++.++++.+.+.+    |+.+..++ .++++....|+.      +||++.+.+++.|+..+ .
T Consensus        82 Pl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~vlg~~~a-~  153 (294)
T PRK12873         82 PLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLA-FLALPPILIYPS------AKRWFAYPQAILALCWG-F  153 (294)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHHH------HHhccccchHHHHHHHH-h
Confidence            999999999999999999999998887665    44454443 344556788887      89999888888877666 4


Q ss_pred             HHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHH
Q 024055          173 IQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKN  249 (273)
Q Consensus       173 ~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~  249 (273)
                      .++.+|.+    +.|. .+.....++.....++|+.+.+++++++|+|+|+++|++|+|+++|++.. .....++.+
T Consensus       154 ~~l~gw~A----v~g~-~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~~~-~~~~~~~~~  224 (294)
T PRK12873        154 AVLIPWAA----AEGS-LNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSNAL-KTVQICYFL  224 (294)
T ss_pred             HHHHHHHH----HhCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChhhH-HHHHHHHHH
Confidence            45555654    2332 11211223322456678889999999999999999999999999997544 444444333

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=99.96  E-value=1.7e-27  Score=214.15  Aligned_cols=213  Identities=17%  Similarity=0.218  Sum_probs=143.3

Q ss_pred             HHHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhc---------C
Q 024055           23 KNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKIN---------K   93 (273)
Q Consensus        23 ~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n---------~   93 (273)
                      +++|+|++++||+++.....+++.|.++|......+++..+++.++++.++..++|++|||+|+|.|+.|         |
T Consensus         3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~~~~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r~~~   82 (297)
T PRK12871          3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWELTIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTRYWR   82 (297)
T ss_pred             chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhcccc
Confidence            4588999999999888888887788888731111234443432334443444556899999999999864         2


Q ss_pred             --CCCccccCcCCHHHHHHHHHHHHHHHHHHHHHhchH---HHHHHHHHHHHHHhHhcCCCCCccccc---chhHHHHHH
Q 024055           94 --PDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSP---PLAWGLILWFILVTAYSIDLPFLRWKR---NAFLAAISI  165 (273)
Q Consensus        94 --~~Rpl~~G~is~~~a~~~~~~~~~l~l~l~~~~~~~---~~~~~~~~~~~~~~~Ys~~~pP~~lK~---~~~~~~~~v  165 (273)
                        ++||+++|++|+++++.+++++.++|+.++..++..   ......+.+.++++.|+.      .||   .| .+.+.-
T Consensus        83 P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~~~~~~~~~~Y~~------~kr~~~~p-~~~l~G  155 (297)
T PRK12871         83 PFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIMLYSYGIEAFYQV------KKRNQKYP-VAQLLG  155 (297)
T ss_pred             CCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cccccccc-HHHHHH
Confidence              489999999999999999999999988887665432   121222344456677776      222   24 233222


Q ss_pred             HHHHhhhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHH
Q 024055          166 MIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLN  245 (273)
Q Consensus       166 ~~~~g~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~  245 (273)
                      +...+. +++.++.     ..|   ..+...+....+.++|+.+++.+||++|+|+|+++|+||+|+++|++++++....
T Consensus       156 ~~~~~~-~~~~g~~-----~~g---~~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~  226 (297)
T PRK12871        156 RTDFTL-FPAAGYL-----CYG---QPDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTG  226 (297)
T ss_pred             HHHHHH-HHHHHHH-----HhC---CCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHH
Confidence            233332 3343342     123   2233334444566778889999999999999999999999999999999876655


Q ss_pred             HHHHhh
Q 024055          246 LFKNMD  251 (273)
Q Consensus       246 ~~~~~~  251 (273)
                      +..+..
T Consensus       227 ~~~l~~  232 (297)
T PRK12871        227 FTALHF  232 (297)
T ss_pred             HHHHHH
Confidence            544433

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.96  E-value=1e-27  Score=215.01  Aligned_cols=212  Identities=23%  Similarity=0.252  Sum_probs=149.6

Q ss_pred             HHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCccccCcC
Q 024055           24 NLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDF  103 (273)
Q Consensus        24 ~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~~~Rpl~~G~i  103 (273)
                      -++.++++.|+.+..........+....  ...+..  ......++.++.+.++|.+|||+|+|+|+.|+|+||.++   
T Consensus         3 ~~~~~~~~~~~~~~~~a~~~~~l~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~s---   75 (285)
T PRK12872          3 LLFAFLKLFRYGNLLIAALGQSLVYMAS--LLLGLP--ISWLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVFS---   75 (285)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHHHH--HHHcCh--hHHHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHHH---
Confidence            4689999999998877666555443211  011111  122556778888999999999999999999999999884   


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHH-----hchHHHHHHHHHHHHHHhHhcCCCCCc-ccccchhHHHHHHHHHHhhhHHHHH
Q 024055          104 SIKTGVAITLTCAMMSLAMGIM-----IGSPPLAWGLILWFILVTAYSIDLPFL-RWKRNAFLAAISIMIGYGVGIQFSF  177 (273)
Q Consensus       104 s~~~a~~~~~~~~~l~l~l~~~-----~~~~~~~~~~~~~~~~~~~Ys~~~pP~-~lK~~~~~~~~~v~~~~g~~~~l~~  177 (273)
                       ++++......+..++..++..     .+++.+.. .+++.++++.||.  ||. ++||.|.++|++++..+|..+..+.
T Consensus        76 -~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~Ys~--~~~~~lk~~p~~~~~~vg~~~g~~~~~~~  151 (285)
T PRK12872         76 -ETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALI-FIIPLILGILYSV--FFKRRLKRIPLFKNLVVSLLWALSPLILG  151 (285)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHHHHhC--hhHHHHhhhhhHhhHHHHHHHHHHHHHHH
Confidence             444444444444333333322     35544443 4566678999999  765 4899999999999999996555544


Q ss_pred             HHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhhh
Q 024055          178 FIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDLE  253 (273)
Q Consensus       178 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~~  253 (273)
                      +..     .+.  .++...+....+.+++...++.++|++|+|+|+++|+||+|+++|+|+++++...+..++++.
T Consensus       152 ~~~-----~~~--~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~  220 (285)
T PRK12872        152 VYY-----YQL--TIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLIL  220 (285)
T ss_pred             HHh-----ccc--ccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHH
Confidence            332     111  123333333445566677889999999999999999999999999999999999998887763

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.94  E-value=1.7e-26  Score=203.10  Aligned_cols=189  Identities=23%  Similarity=0.370  Sum_probs=143.2

Q ss_pred             HHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhh--cCCCCccccCcCCHHHHHHHHHHHH
Q 024055           39 GLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKI--NKPDLPLASGDFSIKTGVAITLTCA  116 (273)
Q Consensus        39 ~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~--n~~~Rpl~~G~is~~~a~~~~~~~~  116 (273)
                      .+..+++.|.+++...  +.++..+..+.+++++.+.++|.+||+.|+|+|+.  |+|+||+++|+++++++...+..+.
T Consensus         3 ~~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~~~   80 (257)
T PF01040_consen    3 LSFLPVLAGLALASGG--PFNWPIFLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALILL   80 (257)
T ss_pred             HHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHHHH
Confidence            3455666664444332  33444455667777789999999999999999999  8899999999999999999999999


Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHHHHHHHHHhhccccchhhHH
Q 024055          117 MMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSL  196 (273)
Q Consensus       117 ~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~~~~~~~g~~~~~~~~~  196 (273)
                      ++++.+++..++..+.+. +++.+.++.||   +|+|+||+++++++.++..++..+..+.+.      .++  ..+...
T Consensus        81 ~l~l~l~~~~~~~~~~~~-~~~~~~~~~Ys---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~  148 (257)
T PF01040_consen   81 LLGLLLALLLGPWFLLIL-LLGFLLGLLYS---PPLRLKRRPLWGELVVALVFGLLILLGAYA------AGG--DPPPPP  148 (257)
T ss_pred             HHHHHHHHhcCchhHHHH-HHHHHHHHHHh---hhhhhcceeccchhhHHHhhhHhhhhhhhh------cCC--cccHHH
Confidence            999998888787665544 45556779999   677999999889999999888555444332      222  122223


Q ss_pred             HHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHH
Q 024055          197 IFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIK  241 (273)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~  241 (273)
                      +....+.+++.......+|++|+|+|+++|+||+|+++|++++++
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~  193 (257)
T PF01040_consen  149 FLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY  193 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence            333233345556677788999999999999999999999999998

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK13592 ubiA prenyltransferase; Provisional

Probab=99.94  E-value=4.2e-26  Score=201.88  Aligned_cols=181  Identities=12%  Similarity=0.123  Sum_probs=133.1

Q ss_pred             HHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCccccCcCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhH
Q 024055           65 ETVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTA  144 (273)
Q Consensus        65 l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~~~Rpl~~G~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~  144 (273)
                      ++.+..++...++|++|||+|+|+|++|+|+||+|||++|+++++.++..+.++++.++...     ... ....++.+.
T Consensus        50 l~~~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~-----~i~-i~~~~i~~l  123 (299)
T PRK13592         50 VGVFTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLF-----MNN-VGWFLFLYI  123 (299)
T ss_pred             HHHHHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-----HHH-HHHHHHHHH
Confidence            45666777788999999999999999999999999999999999999998877777766443     111 122334566


Q ss_pred             h-----cCCCCCcccccchhHHHHHHHHHHhhhHHH--HHHHH-HHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhcc
Q 024055          145 Y-----SIDLPFLRWKRNAFLAAISIMIGYGVGIQF--SFFIH-IQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDL  216 (273)
Q Consensus       145 Y-----s~~~pP~~lK~~~~~~~~~v~~~~g~~~~l--~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (273)
                      |     +.     ++|+.++.||+.++...|..+..  ..|.+ .+....|.+ ......++..+..++.+.++|+.+|+
T Consensus       124 Y~~lm~a~-----~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~-~~~~~~~~l~l~afl~~l~rEI~Kdi  197 (299)
T PRK13592        124 YGTLMSFW-----FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLP-LLSLPTVLLAFTMYFPSLIWEVCRKI  197 (299)
T ss_pred             HHHHHHHH-----HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccc-hhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            6     77     79999999999999998843322  22211 011112211 01110123233455567899999999


Q ss_pred             CChHhhHHcCccccceecchHHHHHHHHHHHHHhhhhccCCCCCC
Q 024055          217 HDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDLEDESPLPGE  261 (273)
Q Consensus       217 ~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~~~~~~~~~~  261 (273)
                      +| |||++ |.+|+|+++|.|+|.+++.++..++.+  .||+|+.
T Consensus       198 eD-~gd~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v~--~s~lp~~  238 (299)
T PRK13592        198 RA-PKDET-EYVTYSKLFGYKKATRFIEVVTLLDIL--TNFALLW  238 (299)
T ss_pred             cC-Ccccc-CCeeechhccchhHHHHHHHHHHHHHH--HhhHHHH
Confidence            99 88885 599999999999999999999999998  9998854

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=7.9e-27  Score=205.80  Aligned_cols=217  Identities=21%  Similarity=0.234  Sum_probs=166.7

Q ss_pred             hHHHHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCC--CCcc
Q 024055           21 FLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINKP--DLPL   98 (273)
Q Consensus        21 ~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~~--~Rpl   98 (273)
                      .+.++|+|++++||+.....+++.+.|+++|.++  +.++..++.+.++..+..+++|++|+++|+|+|++++|  +||+
T Consensus        14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~~--~~~~~l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~RP~   91 (304)
T COG0109          14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPRG--SINPLLLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRKRPL   91 (304)
T ss_pred             hHHHHHHHHHHhCCeeeehHHHHHHHHHHHcccc--cccHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccCCCC
Confidence            5678999999999999999999999999999752  34565666788899999999999999999999999875  9999


Q ss_pred             ccCcCCHHHHHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHH
Q 024055           99 ASGDFSIKTGVAITLTCAMMSLAMG-IMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSF  177 (273)
Q Consensus        99 ~~G~is~~~a~~~~~~~~~l~l~l~-~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~  177 (273)
                      ++|+++++|++.++.++.++|+.+. +..|+....+.+...++-.+.||.     .+||++. -|.++|...|+.+++.+
T Consensus        92 ~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~-----~lKR~T~-~NiviGg~aGa~PpliG  165 (304)
T COG0109          92 VTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTL-----WLKRRTP-QNIVIGGFAGAMPPLIG  165 (304)
T ss_pred             CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-----hccCCcc-cceeeeeccccccccce
Confidence            9999999999999999999999887 666765555544344456889998     8999996 57899999998888888


Q ss_pred             HHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhhh
Q 024055          178 FIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL  252 (273)
Q Consensus       178 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~  252 (273)
                      |.+    +.|.   .+...+.....+++|+-..--.-.++-.|+.+++|+.++|++-|++.+++......++...
T Consensus       166 waA----vtg~---~~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY~~AgiPMlPvv~G~~~t~~~I~~y~~~l~~  233 (304)
T COG0109         166 WAA----VTGS---ISLGAILLFAIIFLWTPPHFWALALKYKDDYKAAGIPMLPVVKGERRTKRQILLYTLALAP  233 (304)
T ss_pred             eee----eeCC---CCchHHHHHHHHHHhccHHHHHHHHHHHHHHHHcCCCcccccccHHHHHHHHHHHHHHHHH
Confidence            875    4442   2322232323444453211111123336677899999999999999999887776665444

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.94  E-value=8.6e-25  Score=195.12  Aligned_cols=170  Identities=21%  Similarity=0.228  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHhhhhhhhchhhhhhcCCCCccccCcCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcC
Q 024055           68 VPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSI  147 (273)
Q Consensus        68 l~~~~~~~~~~~~Nd~~D~~~D~~n~~~Rpl~~G~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~  147 (273)
                      +.+.+...++|++|||+|+|+|++|+|+||.+    +++.+..++++..++|+.+++..|++.  + .+++.+.+++||.
T Consensus        65 ~~~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~g~~l--l-~ll~~l~g~lYS~  137 (307)
T PRK13591         65 IAGGLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMDGMLL--L-AFLPFITGYLYSK  137 (307)
T ss_pred             HHHHHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHHhHHH--H-HHHHHHHHHHhcC
Confidence            34445566788899999999999999999986    788999999999999999988878532  2 2466678999997


Q ss_pred             CC--CC--cccccchhHHHHHHHHHHhhhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhH
Q 024055          148 DL--PF--LRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDK  223 (273)
Q Consensus       148 ~~--pP--~~lK~~~~~~~~~v~~~~g~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~  223 (273)
                      +.  +|  +++|+++.+||+.++.++|.....+  .  +. ..+   ...+ ......+.....++++.+||++|+|+|+
T Consensus       138 Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~--~--g~-~~~---~~~~-~~~i~l~~~~~l~~~~iindirDiEGDr  208 (307)
T PRK13591        138 GIKIGKFALKLKGGLGVKNIVVGITWGGFIAGI--A--GS-YCG---SLIP-VGLIFLFFGVKLFINSCVYDFKDVKGDT  208 (307)
T ss_pred             CCCCCCccccccCCCchhHHHHHHHHHHHHHHH--H--Hh-hhh---hHHH-HHHHHHHHHHHHHHHHHHHHhhhhHhHH
Confidence            21  14  4789998899999999999533211  0  11 011   1111 1111112222235677899999999999


Q ss_pred             HcCccccceecchHHHHHHHHHHHHHhhhh
Q 024055          224 EYGIRTFSVMLGKERMIKELLNLFKNMDLE  253 (273)
Q Consensus       224 ~~G~~Tl~v~lG~~~a~~~~~~~~~~~~~~  253 (273)
                      +.|++|+|+++|+++++++...+++.+++.
T Consensus       209 ~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~  238 (307)
T PRK13591        209 LAGIKTLPVSLGEQKTRNLLLGIHLFSHLV  238 (307)
T ss_pred             HcCCeeEEEEECHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999988877763

>PLN02776 prenyltransferase

Probab=99.93  E-value=3.6e-24  Score=194.28  Aligned_cols=202  Identities=15%  Similarity=0.073  Sum_probs=150.1

Q ss_pred             hhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCccccCcCCHHHH
Q 024055           31 FTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINK--PDLPLASGDFSIKTG  108 (273)
Q Consensus        31 l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~~G~is~~~a  108 (273)
                      ++||+.....+++.+.|+++|.++.+  ++..++.+.++.+++.+++|++||++|+|+|++|+  ++||+++|++|+++|
T Consensus         1 L~Kpri~~lv~~ta~~G~~lA~~~~~--~~~~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~~A   78 (341)
T PLN02776          1 LSKARLSALVVATSGAGFVLGSGEAI--DLPGLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHA   78 (341)
T ss_pred             CCcchhHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHHHH
Confidence            47899999999999999999865433  33334466788899999999999999999999876  599999999999999


Q ss_pred             HHHHHHHHHHHHHH-HHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 024055          109 VAITLTCAMMSLAM-GIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLG  187 (273)
Q Consensus       109 ~~~~~~~~~l~l~l-~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~~~~~~~g  187 (273)
                      +.+++.+.++|+.+ ++.+|+.+..++....++....||.      +||++.+ +..+|...|+++++.+|.+    +.|
T Consensus        79 ~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt~------lKR~t~~-~~~lG~~~Ga~ppL~Gw~A----vtg  147 (341)
T PLN02776         79 VAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYTP------LKQIHPA-NTWVGAVVGAIPPLMGWAA----ASG  147 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh------HccCCch-hHHHHHHHHHHHHHHHHHH----HcC
Confidence            99999999988854 4567876665543222233567886      9999976 5799999998788888876    333


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceec--chHHHHHHHHHHHH
Q 024055          188 RSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVML--GKERMIKELLNLFK  248 (273)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~l--G~~~a~~~~~~~~~  248 (273)
                         ..++..++....+++|+........+.|+|+|+++|++++|+.-  |++.++.+....+.
T Consensus       148 ---~~~~~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~  207 (341)
T PLN02776        148 ---QLDAGAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALRNCLY  207 (341)
T ss_pred             ---CCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHHHHHH
Confidence               23333344444556676644555567788899999999999976  45666665544443

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=99.89  E-value=1.3e-21  Score=175.45  Aligned_cols=144  Identities=19%  Similarity=0.260  Sum_probs=111.1

Q ss_pred             hHHHHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhc--CCCCcc
Q 024055           21 FLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKIN--KPDLPL   98 (273)
Q Consensus        21 ~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n--~~~Rpl   98 (273)
                      ..+++|+|++++||++|.++.+.+. +..++........+...++++++..++++++|++||++|+|+|++|  ||+||+
T Consensus         7 ~~~~l~~~l~L~RP~~w~~nll~~~-~~~~a~~~~~~~~~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~RPl   85 (295)
T PRK12324          7 PKNLLAGYLKLLRPKQWIKNLFVFA-APIFAGNLLNPGALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRNRPI   85 (295)
T ss_pred             hHHHHHHHHHHhCchHHHHHHHHHH-HHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCCCCC
Confidence            4567899999999999999988554 3344432111112222334455556677888899999999999997  689999


Q ss_pred             ccCcCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhh
Q 024055           99 ASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGV  171 (273)
Q Consensus        99 ~~G~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~  171 (273)
                      ++|++++++++.++.++..+|+.+++.+++..... .+..++..+.||.     ++||++.+++++++..++.
T Consensus        86 asG~is~~~A~~~~~~l~~~~l~la~~l~~~~~~~-~~~~~~~~~~Ys~-----~lK~~~~~d~l~va~~~~l  152 (295)
T PRK12324         86 ASGVVSVSLAYILAVVLLVASLALAYLLSPKLALV-LLVYLVLNLAYSF-----KLKHQPVLDVFCIASGFVL  152 (295)
T ss_pred             CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhH-----HhcCCchhhHHHHHHHHHH
Confidence            99999999999999999999999888888765544 3456677889998     8999999999888887763

>PRK08238 hypothetical protein; Validated

Probab=99.87  E-value=3.5e-21  Score=183.30  Aligned_cols=191  Identities=21%  Similarity=0.283  Sum_probs=139.4

Q ss_pred             hhhhHHHHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCc-HHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhc--CC
Q 024055           18 QAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLT-PTFFMETVVPAALMAIYMTAINQLVDVKIDKIN--KP   94 (273)
Q Consensus        18 ~~~~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~-~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n--~~   94 (273)
                      .++.+.++++|++++||++|.++.+.++ +++.+. .+.+.. +...++++++..++.+++|++||++|+|.|+.|  |+
T Consensus       184 ~~~~~~~~~~~~~l~Rp~q~~kn~l~~~-p~l~a~-~~~~~~~~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~  261 (479)
T PRK08238        184 FPPRPARLRTWLKALRVHQWAKNLLVFV-PLLAAH-QFGDLQALLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRKR  261 (479)
T ss_pred             cCCCchHHHHHHHHhCCcHHHHHHHHHH-HHHHhc-ccCChHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCC
Confidence            3445678999999999999999998754 776663 222322 222335566667888899999999999999998  67


Q ss_pred             CCccccCcCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHH
Q 024055           95 DLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQ  174 (273)
Q Consensus        95 ~Rpl~~G~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~  174 (273)
                      +||+++|++|+++|+.++.++.++|+.+++.+++..+ ...+..++..++||.     ++||+++++++++++.++.-+.
T Consensus       262 ~RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~~~~-~~~~~~~~~~~~Ys~-----~lKr~~~~~~~~la~~~~lr~~  335 (479)
T PRK08238        262 RRPFASGALPIPFGLAAAPLLLLAGLALALALGPAFL-LVLLAYLALTLAYSL-----RLKRKVLVDVLTLAALYTLRII  335 (479)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHhhH-----HhcCCccccchHHHHHHHHHHH
Confidence            9999999999999999999999999999888887443 334566677889998     8999999999999888764333


Q ss_pred             HHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCc
Q 024055          175 FSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGI  227 (273)
Q Consensus       175 l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~  227 (273)
                      .| +.     ..+    .+...|+.. +..++.....+.+...|.+++++.|.
T Consensus       336 ~G-~~-----a~~----~~~s~wll~-~~~~~~l~la~~KR~~El~~~~~~~~  377 (479)
T PRK08238        336 AG-AA-----AIG----VALSFWLLA-FSMFFFLSLALVKRYTELRRALQRGK  377 (479)
T ss_pred             HH-HH-----Hhc----cCHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHhcCC
Confidence            33 22     122    122223321 22223345677888888888887775

>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]

Probab=99.84  E-value=3.6e-21  Score=165.67  Aligned_cols=218  Identities=17%  Similarity=0.129  Sum_probs=158.6

Q ss_pred             hhhhhhhhhHHHHHHHHHhhccchhHHHH---HHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhh
Q 024055           13 KLKSFQAGFLKNLKSLYRFTRPNTLNGLV---IAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKID   89 (273)
Q Consensus        13 ~~~~~~~~~~~~l~~~~~l~Rp~~~~~~~---~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D   89 (273)
                      +.++.....+.+++.|.|++|....+++.   .|.....++|...-...+...+.+.-.+.+++.+++|.+||..|+|.|
T Consensus        52 ssss~~~~~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAdag~~p~~~mL~LFG~GAllMRgAGCtINDlwDkdlD  131 (353)
T KOG1381|consen   52 SSSSLVASSPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADAGLLPSIKMLALFGVGALLMRGAGCTINDLWDKDLD  131 (353)
T ss_pred             CchhhhhcCCccchhHHHHHhcCCCceeeeeecchHHHHHhccCCCccchhHHHHHhcccHHHhccCCceehhhhhhhhh
Confidence            33556666778899999999998877664   455556666653211112222334456789999999999999999999


Q ss_pred             hhcC--CCCccccCcCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHH
Q 024055           90 KINK--PDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMI  167 (273)
Q Consensus        90 ~~n~--~~Rpl~~G~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~  167 (273)
                      +..+  +.||+++|++|++||..+......+|+.+...+|++...+ +..++...+.|+.      +||.+++.+++.|.
T Consensus       132 ~KVeRtklRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~l-g~~sl~~v~~ypl------~kr~TY~pq~vLgl  204 (353)
T KOG1381|consen  132 AKVERTKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIAL-GASSLALVITYPL------MKRFTYWPQLVLGL  204 (353)
T ss_pred             hhHhhhcccccccCCcchhHHHHHHHHHHHHhHHHHHhccHHHHHh-cccccccEEEeeh------hhhcchhHHHHHhh
Confidence            9754  4899999999999999998888889988888889876654 3466667788887      99999999999888


Q ss_pred             HHhhhHHHHHHHHHHHHhhccccchhhHHHHH-HHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHH
Q 024055          168 GYGVGIQFSFFIHIQKYVLGRSVVITRSLIFT-TGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLN  245 (273)
Q Consensus       168 ~~g~~~~l~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~  245 (273)
                      ++..-..+| |.+    +-|   +..+...+. .+--..|+...+.+++.+|.++|.++|+|+.+.++|++.-.++...
T Consensus       205 tfnwGAllG-w~A----~~g---~~~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~gf  275 (353)
T KOG1381|consen  205 TFNWGALLG-WCA----LKG---SLSPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSGF  275 (353)
T ss_pred             hcchhhhhc-chh----hcC---ccChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHhhh
Confidence            766433344 322    222   122222221 1112235667799999999999999999999999999987777643

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=99.59  E-value=1.5e-16  Score=134.35  Aligned_cols=220  Identities=18%  Similarity=0.127  Sum_probs=156.0

Q ss_pred             HHHHHHHHHhhccchhHHHHHHHHHHHHhhccc--CCCCcHHHHHHHHHHHHHHHHHHhhhhhhhch--hhhhhcCCCCc
Q 024055           22 LKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQN--LGDLTPTFFMETVVPAALMAIYMTAINQLVDV--KIDKINKPDLP   97 (273)
Q Consensus        22 ~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~--~~D~~n~~~Rp   97 (273)
                      ..+.+.|+-..||+....++.|...|.++|..+  ..++....+.++.++.+..+.+.|.+|.|+|.  .+|.....+|.
T Consensus        58 ~~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~l~~~fl~a~avlavh~agnlvntyfdf~kgid~kkaddrt  137 (359)
T KOG4581|consen   58 FMKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFRLATFFLCAFAVLAVHCAGNLVNTYFDFIKGIDHKKADDRT  137 (359)
T ss_pred             HHHHHHHHhhhcccccccccchHhhhhHHHHhhccccchhHHHHHHHHhhheeeecccchhhhhhhhhhccccccccchh
Confidence            467889999999999999999999999998653  23444444445667777889999999999998  47877667999


Q ss_pred             cccCcCCHHHHHHHHHHHHHHHHHHH---HHhchHH---HHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhh
Q 024055           98 LASGDFSIKTGVAITLTCAMMSLAMG---IMIGSPP---LAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGV  171 (273)
Q Consensus        98 l~~G~is~~~a~~~~~~~~~l~l~l~---~~~~~~~---~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~  171 (273)
                      ++...+++.+...++..+..+|..-+   +.+++..   +.+....++-..++|+.+.   .+|+.. +|.+++-+.+|+
T Consensus       138 lvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytggi---gfkyia-lgdliili~fgp  213 (359)
T KOG4581|consen  138 LVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTGGI---GFKYIA-LGDLIILILFGP  213 (359)
T ss_pred             HHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEeccc---ceEEEe-ccCEEEEEeech
Confidence            99999999999999888887665432   3344421   2222334445578899733   689888 588887777886


Q ss_pred             hHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhccCChHhhHHcCccccceecchHHHHHHHHHHHHHhh
Q 024055          172 GIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMD  251 (273)
Q Consensus       172 ~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~~~~~~~~~~~  251 (273)
                      +..+-.|.. |+   |. ..+.+ ..+. +...+-+-++.+.||.||.|+||++|+-|+++.+|+..+-.++.-++.+-|
T Consensus       214 iavlfaf~~-q~---g~-l~~~~-l~ya-iplalnteailhsnntrd~dndr~agivtlailig~t~s~ily~~llf~py  286 (359)
T KOG4581|consen  214 IAVLFAFAI-QT---GH-LAIFP-LGYA-IPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAMLLFAPY  286 (359)
T ss_pred             HHHHHHHHH-hc---Cc-eeEEe-ehhe-eeeccchHHHhccCCCcccccccccCeEEEEEeecccHHHHHHHHHHHHHH
Confidence            544433332 32   21 11111 1121 233334567889999999999999999999999999998887776655554


Q ss_pred             h
Q 024055          252 L  252 (273)
Q Consensus       252 ~  252 (273)
                      +
T Consensus       287 ~  287 (359)
T KOG4581|consen  287 L  287 (359)
T ss_pred             H
Confidence            4

>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]

Probab=99.55  E-value=3.8e-15  Score=131.49  Aligned_cols=212  Identities=16%  Similarity=0.134  Sum_probs=150.0

Q ss_pred             HHHHHHHHHhhccchhHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCC--CCccc
Q 024055           22 LKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMETVVPAALMAIYMTAINQLVDVKIDKINKP--DLPLA   99 (273)
Q Consensus        22 ~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~Nd~~D~~~D~~n~~--~Rpl~   99 (273)
                      .+.++.|+|++||+.....+++...|+++|...+ +++  -++.+.++..+++..+|++||+++...|.++++  +||++
T Consensus        91 ~k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p~-s~~--~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rplv  167 (409)
T KOG1380|consen   91 GKYARCYLELSKPRLTMLVVLTTMTGYALAPGPF-SFP--TLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNRPLV  167 (409)
T ss_pred             cchHHHHHHhcccceEEEEeeeccccccccccCC-Ccc--hhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhcccccc
Confidence            4678899999999988888888888999997642 333  344677888999999999999999999998765  89999


Q ss_pred             cCcCCHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHhHhcCCCCCcccccchhHHHHHHHHHHhhhHHHHHH
Q 024055          100 SGDFSIKTGVAITLTCAMMSLAMGIM-IGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFF  178 (273)
Q Consensus       100 ~G~is~~~a~~~~~~~~~l~l~l~~~-~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~  178 (273)
                      +|++++.+|+.++.+..+.|..+.++ .|+....    ++..-.++|...|.|  +||... .|-.+|.+.|+++++-+|
T Consensus       168 ~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~----Lga~Ni~LY~~vYTP--lKrihi-inTWvGavVGAIPPLMGw  240 (409)
T KOG1380|consen  168 RGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAA----LGAGNIFLYAGVYTP--LKRIHI-INTWVGAVVGAIPPLMGW  240 (409)
T ss_pred             cCccChHHHHHHHHHhccccceeeeecccHHHHH----Hhhcchheeeccccc--hhhhhh-hhhHHHHHhccCCccchh
Confidence            99999999999999888888776544 6664433    233334455554444  899885 677899999988888888


Q ss_pred             HHHHHHhhccccchhhHHHHHHHHHHHHH--HHHHHHhccCChHhhHHcCcccccee---cchHHHHHHHHHHHHHhhh
Q 024055          179 IHIQKYVLGRSVVITRSLIFTTGVITCMS--LAKALLKDLHDVDGDKEYGIRTFSVM---LGKERMIKELLNLFKNMDL  252 (273)
Q Consensus       179 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~e~D~~~G~~Tl~v~---lG~~~a~~~~~~~~~~~~~  252 (273)
                      .+    ..|   ..++..+......+.|.  .-..+..++||  +..++|.+.+++.   +-++.+.+.+..++.+.+.
T Consensus       241 AA----asg---~l~~ga~iLa~~LyaWQfPHFnaLS~~lR~--DYs~~GY~Mma~~np~l~rr~alr~s~a~~~L~~~  310 (409)
T KOG1380|consen  241 AA----ASG---LLDPGAMILAGILYAWQFPHFNALSWNLRN--DYSKAGYRMMAVTNPGLCRRVALRYSLAFLPLSYA  310 (409)
T ss_pred             hh----hcc---CCCccHHHHHHHHHHhcccchhhhhhhhch--hhhhccEEEEEeeccchhhHHHHHHHHHHhhhhcc
Confidence            75    223   12333333322333332  23344444543  4578999999986   4456677777777766654

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=93.56  E-value=1.1  Score=40.46  Aligned_cols=31  Identities=19%  Similarity=0.209  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHhhhhhhhchhhhhhcCCCCcc
Q 024055           68 VPAALMAIYMTAINQLVDVKIDKINKPDLPL   98 (273)
Q Consensus        68 l~~~~~~~~~~~~Nd~~D~~~D~~n~~~Rpl   98 (273)
                      +.+......++..|+..|.|+|+.|+++.+.
T Consensus       183 lp~gil~~~Il~aNNirDie~D~~~gk~TLa  213 (303)
T COG1575         183 LPVGILIANILLANNLRDIEEDIRNGKYTLA  213 (303)
T ss_pred             HHHHHHHHHHHHhcccccchhHHhcCCccee
Confidence            3444455566789999999999999875544

>PRK13591 ubiA prenyltransferase; Provisional

Probab=93.12  E-value=1  Score=40.88  Aligned_cols=67  Identities=19%  Similarity=0.305  Sum_probs=36.1

Q ss_pred             hhhhhhchhhhhhcCCCCccccCcCCHHHHHHHHHHHHHHH---HHHHHHhc-----hHHHHHHHHHHHHHHhHhcC
Q 024055           79 AINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMS---LAMGIMIG-----SPPLAWGLILWFILVTAYSI  147 (273)
Q Consensus        79 ~~Nd~~D~~~D~~n~~~Rpl~~G~is~~~a~~~~~~~~~l~---l~l~~~~~-----~~~~~~~~~~~~~~~~~Ys~  147 (273)
                      .+||+.|.|.|+.++. |.+|- .+.++.+..+...+.+++   .+.+..+|     +...+.++..++...+.|+.
T Consensus       197 iindirDiEGDr~~G~-kTLPV-~lG~~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~  271 (307)
T PRK13591        197 CVYDFKDVKGDTLAGI-KTLPV-SLGEQKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSS  271 (307)
T ss_pred             HHHHhhhhHhHHHcCC-eeEEE-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcC
Confidence            5899999999999764 22322 233344444433333222   12222222     22233345567777889998

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=92.77  E-value=1.5  Score=39.38  Aligned_cols=53  Identities=11%  Similarity=0.120  Sum_probs=35.8

Q ss_pred             HHHHHhhhhhhhchhhhhhcCCCCccccCcCCHHHHHHHHHHHHHHHHHHHHHhc
Q 024055           73 MAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIG  127 (273)
Q Consensus        73 ~~~~~~~~Nd~~D~~~D~~n~~~Rpl~~G~is~~~a~~~~~~~~~l~l~l~~~~~  127 (273)
                      ...+...+||+.|.|.|+.++. |.++. ++.++.+..++..+.+++.+....++
T Consensus       172 ~~~a~~ii~~irDie~Dr~~G~-~Tlpv-~lG~~~a~~~~~~l~~~a~~~~~~~~  224 (282)
T PRK13105        172 WGMASHAFGAVQDVVADREAGI-ASIAT-VLGARRTVRLAVGLYAAAAVLMLALP  224 (282)
T ss_pred             HHHHHHHHHhCcchHhHHHcCC-ccchH-HhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556668999999999998753 33333 45667787777777766665444333

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=91.92  E-value=2  Score=38.24  Aligned_cols=42  Identities=17%  Similarity=0.255  Sum_probs=25.0

Q ss_pred             HHHHHHhhhhhhhchhhhhhcC-CCCccccCcCCHHHHHHHHHHHH
Q 024055           72 LMAIYMTAINQLVDVKIDKINK-PDLPLASGDFSIKTGVAITLTCA  116 (273)
Q Consensus        72 ~~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~~G~is~~~a~~~~~~~~  116 (273)
                      +.....+.+||.-|+|.|+.++ +.=|..-|   ++.+......+.
T Consensus       172 l~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG---~~~t~~~~~~~~  214 (285)
T PRK12872        172 LKSFIREIVFDIKDIEGDRKSGLKTLPIVLG---KERTLKFLLILN  214 (285)
T ss_pred             HHHHHHHHHHhcccchhHHHcCCcccchhcc---hHHHHHHHHHHH
Confidence            3344445789999999999865 33343334   344544444433

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=91.43  E-value=5.2  Score=35.93  Aligned_cols=51  Identities=18%  Similarity=0.163  Sum_probs=31.5

Q ss_pred             HHHHHHHhhhhhhhchhhhhhcCCCCccccCcCCHHHHHHHHHHHHHHHHHHH
Q 024055           71 ALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMG  123 (273)
Q Consensus        71 ~~~~~~~~~~Nd~~D~~~D~~n~~~Rpl~~G~is~~~a~~~~~~~~~l~l~l~  123 (273)
                      .+.+.....+||+.|+|.|+..+. |.++. ++.++.+..+...+..++..+-
T Consensus       175 ~l~~~~~~~in~i~Die~D~~aGi-~Tlav-~lG~~~a~~~~~~~~~~a~~~~  225 (282)
T PRK12875        175 WLWAMGMHTFSAIPDIEPDRAAGI-RTTAT-VLGERRTYAYCAACWLLAAAAF  225 (282)
T ss_pred             HHHHHHHHHHHhccCHHHHHHcCC-ccchh-hccHhhHHHHHHHHHHHHHHHH
Confidence            344555567899999999998652 33322 4445666666666555554443

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=91.11  E-value=4.2  Score=36.35  Aligned_cols=35  Identities=20%  Similarity=0.148  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHhhhhhhhchhhhhhcC-CCCccccCc
Q 024055           68 VPAALMAIYMTAINQLVDVKIDKINK-PDLPLASGD  102 (273)
Q Consensus        68 l~~~~~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~~G~  102 (273)
                      +..++.+..-..+|++.|+|.|+..+ |.-|..-|+
T Consensus       167 ~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~  202 (281)
T TIGR01474       167 LANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGD  202 (281)
T ss_pred             HHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhh
Confidence            44445555566789999999999754 555655564

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=90.85  E-value=2.2  Score=38.16  Aligned_cols=34  Identities=18%  Similarity=0.268  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHhhhhhhhchhhhhhcC-CCCccccC
Q 024055           68 VPAALMAIYMTAINQLVDVKIDKINK-PDLPLASG  101 (273)
Q Consensus        68 l~~~~~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~~G  101 (273)
                      +..++.+..-..+||..|+|.|+..+ |.-|..-|
T Consensus       165 ~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G  199 (282)
T TIGR01475       165 IGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFG  199 (282)
T ss_pred             HHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhc
Confidence            33344445555699999999998754 45555555

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PLN00012 chlorophyll synthetase; Provisional

Probab=90.59  E-value=4.2  Score=38.07  Aligned_cols=31  Identities=19%  Similarity=0.341  Sum_probs=21.4

Q ss_pred             HHHHHHhhhhhhhchhhhhhcC-CCCccccCc
Q 024055           72 LMAIYMTAINQLVDVKIDKINK-PDLPLASGD  102 (273)
Q Consensus        72 ~~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~~G~  102 (273)
                      +...+....||+.|+|.|+..+ +.-|..-|.
T Consensus       263 l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~  294 (375)
T PLN00012        263 IAGLGIAIVNDFKSIEGDRALGLQSLPVAFGV  294 (375)
T ss_pred             HHHHHHHHHhhhcchhhHHHcCCcccceeech
Confidence            3444556799999999999764 445554454

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=90.24  E-value=2.4  Score=38.58  Aligned_cols=41  Identities=10%  Similarity=0.018  Sum_probs=25.2

Q ss_pred             HHHHhhhhhhhchhhhhhcCCCCccccCcCCHHHHHHHHHHHH
Q 024055           74 AIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCA  116 (273)
Q Consensus        74 ~~~~~~~Nd~~D~~~D~~n~~~Rpl~~G~is~~~a~~~~~~~~  116 (273)
                      .......||+-|+|+|+.++++ .++. ++.++.+......+.
T Consensus       187 ~~~IL~~Nn~rD~e~D~~~Gk~-TL~v-~lG~~~a~~ly~~l~  227 (304)
T PRK07419        187 TSLILFCSHFHQVEDDLAAGKR-SPIV-RLGTKRGAQLLPWIV  227 (304)
T ss_pred             HHHHHHHcCCcchhhHHHcCCc-ceee-eechHhHHHHHHHHH
Confidence            3455569999999999998753 3322 344455544444333

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=89.29  E-value=6.7  Score=35.08  Aligned_cols=34  Identities=18%  Similarity=0.056  Sum_probs=22.1

Q ss_pred             HHHHHHHHHhhhhhhhchhhhhhcC-CCCccccCc
Q 024055           69 PAALMAIYMTAINQLVDVKIDKINK-PDLPLASGD  102 (273)
Q Consensus        69 ~~~~~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~~G~  102 (273)
                      ..++.+..-...|++.|+|.|+.++ |.-|..-|.
T Consensus       173 ~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~  207 (285)
T PRK12847        173 GCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGN  207 (285)
T ss_pred             HHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhcc
Confidence            3344444445689999999999865 444554454

>PLN02922 prenyltransferase

Probab=88.89  E-value=3.1  Score=37.96  Aligned_cols=41  Identities=10%  Similarity=0.124  Sum_probs=25.4

Q ss_pred             HHHHhhhhhhhchhhhhhcCCCCccccCcCCHHHHHHHHHHHH
Q 024055           74 AIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCA  116 (273)
Q Consensus        74 ~~~~~~~Nd~~D~~~D~~n~~~Rpl~~G~is~~~a~~~~~~~~  116 (273)
                      .......||+-|+|+|+.++++...+  ++.++.+..+...+.
T Consensus       201 ~~~iL~~Nn~rD~e~D~~~Gk~TL~v--~lG~~~a~~l~~~l~  241 (315)
T PLN02922        201 TTLILFCSHFHQIDGDRAVGKMSPLV--RLGTEKGSRVVRWAV  241 (315)
T ss_pred             HHHHHHHccCcchhhHHHcCccceee--EEChHHHHHHHHHHH
Confidence            34556799999999999987543222  344455554444333

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=88.86  E-value=6.3  Score=35.87  Aligned_cols=29  Identities=24%  Similarity=0.324  Sum_probs=19.7

Q ss_pred             HHHHhhhhhhhchhhhhhcC-CCCccccCc
Q 024055           74 AIYMTAINQLVDVKIDKINK-PDLPLASGD  102 (273)
Q Consensus        74 ~~~~~~~Nd~~D~~~D~~n~-~~Rpl~~G~  102 (273)
                      .......||+.|+|.|+..+ +.-|..-|+
T Consensus       202 ~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~  231 (314)
T PRK07566        202 AHGIMTLNDFKSVEGDRQLGLRSLPVVFGE  231 (314)
T ss_pred             HHHHHHHHHHHHhHhHHHcCCcccceeEcH
Confidence            34446799999999999864 344444443

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=88.39  E-value=4.3  Score=36.78  Aligned_cols=33  Identities=18%  Similarity=0.214  Sum_probs=22.2

Q ss_pred             HHHHHHHHHhhhhhhhchhhhhhcC-CCCccccC
Q 024055           69 PAALMAIYMTAINQLVDVKIDKINK-PDLPLASG  101 (273)
Q Consensus        69 ~~~~~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~~G  101 (273)
                      +.++.+.+-..+|+..|+|.|+..+ +.-|+.-|
T Consensus       185 ~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G  218 (300)
T PRK13106        185 GTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG  218 (300)
T ss_pred             HHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh
Confidence            4444455556799999999998754 44555445

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=87.55  E-value=3  Score=38.15  Aligned_cols=45  Identities=18%  Similarity=0.108  Sum_probs=27.7

Q ss_pred             HHHHHHhhhhhhhchhhhhhcCCCCccccCcCCHHHHHHHHHHHHHH
Q 024055           72 LMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMM  118 (273)
Q Consensus        72 ~~~~~~~~~Nd~~D~~~D~~n~~~Rpl~~G~is~~~a~~~~~~~~~l  118 (273)
                      +........||+-|+|+|+.++++ .++. ++.++.+......+..+
T Consensus       200 ~l~~~ill~Nn~~D~e~D~~~gk~-TL~v-~lG~~~a~~l~~~l~~~  244 (317)
T PRK13387        200 FTIANIMLANNLRDLDEDIKNHRY-TLVY-YIGREKGVVLFAILFYA  244 (317)
T ss_pred             HHHHHHHHhcCCccchhHHHcCCe-eeee-eEcHHhHHHHHHHHHHH
Confidence            334444579999999999998643 3322 44456665554444443

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=87.37  E-value=8.8  Score=34.07  Aligned_cols=33  Identities=24%  Similarity=0.374  Sum_probs=21.3

Q ss_pred             HHHHHHHHhhhhhhhchhhhhhcC-CCCccccCc
Q 024055           70 AALMAIYMTAINQLVDVKIDKINK-PDLPLASGD  102 (273)
Q Consensus        70 ~~~~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~~G~  102 (273)
                      .++.+...+..||+.|+|.|+.++ +.=|..-|+
T Consensus       164 ~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~  197 (279)
T PRK12884        164 AFLMTLGREIMKDIEDVEGDRLRGARTLAILYGE  197 (279)
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcH
Confidence            334444556799999999999865 333443343

>PRK13592 ubiA prenyltransferase; Provisional

Probab=87.11  E-value=2.4  Score=38.32  Aligned_cols=48  Identities=15%  Similarity=0.066  Sum_probs=32.9

Q ss_pred             HHHHHHHHHhccCChHhhHHc--CccccceecchHHHHHHHHHHHHHhhh
Q 024055          205 CMSLAKALLKDLHDVDGDKEY--GIRTFSVMLGKERMIKELLNLFKNMDL  252 (273)
Q Consensus       205 ~~~~~~~~~~~~~D~e~D~~~--G~~Tl~v~lG~~~a~~~~~~~~~~~~~  252 (273)
                      +.+.+-.++||+.|+|-|+.+  .|.=-.-+..+|.++..+..+.+++..
T Consensus        57 ~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~  106 (299)
T PRK13592         57 GFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVL  106 (299)
T ss_pred             HHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHH
Confidence            334567889999999999754  222223366778888888777665554

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=87.01  E-value=5.1  Score=36.04  Aligned_cols=44  Identities=9%  Similarity=0.014  Sum_probs=27.6

Q ss_pred             HHHHHhhhhhhhchhhhhhcCCCCccccCcCCHHHHHHHHHHHHHH
Q 024055           73 MAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMM  118 (273)
Q Consensus        73 ~~~~~~~~Nd~~D~~~D~~n~~~Rpl~~G~is~~~a~~~~~~~~~l  118 (273)
                      ........||+-|+|+|+.++++ .++. ++.++.+..+...+..+
T Consensus       173 ~~~~iL~~Nn~rD~e~D~~~Gk~-TL~v-~lG~~~a~~l~~~l~~~  216 (285)
T TIGR02235       173 ATTLILFCSHFHQVEDDLAHGKR-SPVV-RLGTKLAAKIVPWVISL  216 (285)
T ss_pred             HHHHHHHhcCCccchhHHHcCCc-ceeh-eecHHhHHHHHHHHHHH
Confidence            34455679999999999998643 3332 44456665554444433

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=86.94  E-value=16  Score=32.84  Aligned_cols=35  Identities=17%  Similarity=0.140  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHhhhhhhhchhhhhhcC-CCCccccCc
Q 024055           68 VPAALMAIYMTAINQLVDVKIDKINK-PDLPLASGD  102 (273)
Q Consensus        68 l~~~~~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~~G~  102 (273)
                      +...+.+..-..+|++.|+|.|+..+ |.-|..-|.
T Consensus       166 ~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~  201 (284)
T PRK12888        166 LAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGV  201 (284)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCc
Confidence            34444555666899999999999764 444554454

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=86.77  E-value=19  Score=32.45  Aligned_cols=35  Identities=17%  Similarity=0.265  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHhhhhhhhchhhhhhcC-CCCccccCc
Q 024055           68 VPAALMAIYMTAINQLVDVKIDKINK-PDLPLASGD  102 (273)
Q Consensus        68 l~~~~~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~~G~  102 (273)
                      +..++-+..-..+|++.|+|.|+..+ |.-|..-|.
T Consensus       174 ~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~  209 (291)
T PRK12874        174 LGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGE  209 (291)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhh
Confidence            34445555556799999999998754 555555554

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=86.11  E-value=8.2  Score=34.77  Aligned_cols=34  Identities=15%  Similarity=0.233  Sum_probs=21.7

Q ss_pred             HHHHHHHHHhhhhhhhchhhhhhcC-CCCccccCc
Q 024055           69 PAALMAIYMTAINQLVDVKIDKINK-PDLPLASGD  102 (273)
Q Consensus        69 ~~~~~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~~G~  102 (273)
                      ..++.+..-..+|++.|+|.|+..+ |.-|..-|+
T Consensus       170 ~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~  204 (291)
T PRK12886        170 AVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGV  204 (291)
T ss_pred             HHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCc
Confidence            3334344444578889999998754 556665565

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=86.06  E-value=7.2  Score=35.38  Aligned_cols=39  Identities=21%  Similarity=0.250  Sum_probs=23.5

Q ss_pred             HHHHHhhhhhhhchhhhhhcCCCCccccCcCCHHHHHHHHH
Q 024055           73 MAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITL  113 (273)
Q Consensus        73 ~~~~~~~~Nd~~D~~~D~~n~~~Rpl~~G~is~~~a~~~~~  113 (273)
                      ........||+.|+|.|+.+++ |.++. ++.++.+.....
T Consensus       195 ~~~~i~~~n~~~D~e~D~~~G~-~Tlpv-~lG~~~a~~~~~  233 (306)
T TIGR02056       195 AGLGIAIVNDFKSVEGDRALGL-QSLPV-AFGIETAAWICV  233 (306)
T ss_pred             HHHHHHHHHHccChHHHHHcCC-cCcch-hcChHHHHHHHH
Confidence            3445557999999999998753 22322 333444544444

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=86.02  E-value=1.8  Score=39.22  Aligned_cols=47  Identities=21%  Similarity=0.121  Sum_probs=31.6

Q ss_pred             HHHHHHHHhccCChHhhHHc---Ccccc-ceecchHHHHHHHHHHHHHhhh
Q 024055          206 MSLAKALLKDLHDVDGDKEY---GIRTF-SVMLGKERMIKELLNLFKNMDL  252 (273)
Q Consensus       206 ~~~~~~~~~~~~D~e~D~~~---G~~Tl-~v~lG~~~a~~~~~~~~~~~~~  252 (273)
                      ...+...+||+.|+|.|+++   ..|-+ .-++..+.+..++.++..++..
T Consensus        58 ~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~~~l~  108 (295)
T PRK12324         58 ASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVASLA  108 (295)
T ss_pred             HHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHHHHHHHH
Confidence            34567889999999999985   22333 3356777777776666555443

>PRK11383 hypothetical protein; Provisional

Probab=86.01  E-value=11  Score=30.24  Aligned_cols=82  Identities=16%  Similarity=0.169  Sum_probs=37.4

Q ss_pred             HHHHHHHHhHhcCCCCCcccc--cchhHHHHHHHHHHhh-hHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHH
Q 024055          135 LILWFILVTAYSIDLPFLRWK--RNAFLAAISIMIGYGV-GIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKA  211 (273)
Q Consensus       135 ~~~~~~~~~~Ys~~~pP~~lK--~~~~~~~~~v~~~~g~-~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  211 (273)
                      ++.+++..+.|..   -.|-|  ..+. .+...+.+|-+ +..++.+..   .+...+...+.-..+...+...+..++.
T Consensus        48 l~lglF~avs~QK---~vRD~~egi~v-t~~f~~~cw~a~l~~i~LL~i---GLwNA~l~lsEKGfY~~af~lsLFgai~  120 (145)
T PRK11383         48 LVLGLFSAASYQK---TVRDKYEGIPT-TSIYYMTCLTVFIISVALLMV---GLWNATLLLSEKGFYGLAFFLSLFGAVA  120 (145)
T ss_pred             HHHHHHHHHHHHH---HHhhcccCCCh-hHHHHHHHHHHHHHHHHHHHH---HHhcCCcchhhhhHHHHHHHHHHHHHHH
Confidence            4455556666653   12334  3343 34666666652 222222211   1222211223333444333322334577


Q ss_pred             HHhccCChHhhH
Q 024055          212 LLKDLHDVDGDK  223 (273)
Q Consensus       212 ~~~~~~D~e~D~  223 (273)
                      +-+|+||....+
T Consensus       121 vQKn~RD~~~~~  132 (145)
T PRK11383        121 VQKNIRDAGINP  132 (145)
T ss_pred             HHhhhhhhhhcc
Confidence            889999985443

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=85.30  E-value=4.9  Score=36.99  Aligned_cols=21  Identities=33%  Similarity=0.358  Sum_probs=15.9

Q ss_pred             HHHHHhhhhhhhchhhhhhcC
Q 024055           73 MAIYMTAINQLVDVKIDKINK   93 (273)
Q Consensus        73 ~~~~~~~~Nd~~D~~~D~~n~   93 (273)
                      .......+||..|+|.|+..+
T Consensus       192 ~~~~~~~i~d~~D~egD~~~G  212 (331)
T PRK12392        192 MAIALIIMNDFKSVEGDKEGG  212 (331)
T ss_pred             HHHHHHHHHcccchhhHHHcC
Confidence            334444689999999999864

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=85.21  E-value=7.9  Score=34.47  Aligned_cols=31  Identities=16%  Similarity=0.229  Sum_probs=20.5

Q ss_pred             HHHHHHHhhhhhhhchhhhhhcC-CCCccccC
Q 024055           71 ALMAIYMTAINQLVDVKIDKINK-PDLPLASG  101 (273)
Q Consensus        71 ~~~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~~G  101 (273)
                      ++.+..-...||+.|+|.|+.++ |.-|..-|
T Consensus       164 f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G  195 (279)
T PRK09573        164 FFSTWSREIVKDIEDIEGDLKENVITLPIKYG  195 (279)
T ss_pred             HHHHHHHHHHhhhhhhhhHHHCCCccccHHhh
Confidence            34444555679999999999754 44455444

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=84.88  E-value=18  Score=32.89  Aligned_cols=23  Identities=9%  Similarity=0.216  Sum_probs=17.5

Q ss_pred             HHHHHHhhhhhhhchhhhhhcCC
Q 024055           72 LMAIYMTAINQLVDVKIDKINKP   94 (273)
Q Consensus        72 ~~~~~~~~~Nd~~D~~~D~~n~~   94 (273)
                      +........||+.|+|.|+.++.
T Consensus       193 ~~~~~~~l~~di~D~egD~~~Gi  215 (308)
T PRK12887        193 VFTFAIAIFKDIPDMEGDRQYQI  215 (308)
T ss_pred             HHHHHHHHHHhccchhhHHHcCC
Confidence            44445556999999999998753

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=84.59  E-value=9.6  Score=34.23  Aligned_cols=40  Identities=18%  Similarity=0.046  Sum_probs=25.0

Q ss_pred             HHHhhhhhhhchhhhhhcCCCCccccCcCCHHHHHHHHHHHH
Q 024055           75 IYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCA  116 (273)
Q Consensus        75 ~~~~~~Nd~~D~~~D~~n~~~Rpl~~G~is~~~a~~~~~~~~  116 (273)
                      ......||.-|+|.|+.++++. ++ -++.++.+......+.
T Consensus       178 ~~il~~Nn~~D~~~D~~~Gk~T-l~-v~lG~~~a~~l~~~l~  217 (284)
T TIGR00751       178 CAVLNINNLRDIPTDARAGKNT-LA-VRLGDARTRMYHQGLL  217 (284)
T ss_pred             HHHHHHcCcccchhHHHcCCEe-eh-hhcchHhHHHHHHHHH
Confidence            4445699999999999976532 22 2444555555444433

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=84.36  E-value=12  Score=33.61  Aligned_cols=36  Identities=8%  Similarity=0.027  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHhhhhhhhchhhhhhcC-CCCccccCc
Q 024055           67 VVPAALMAIYMTAINQLVDVKIDKINK-PDLPLASGD  102 (273)
Q Consensus        67 ~l~~~~~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~~G~  102 (273)
                      .+..++.+..-..+|++.|+|.|+..+ +.-|..-|+
T Consensus       172 ~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~  208 (290)
T PRK12870        172 WAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGR  208 (290)
T ss_pred             HHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhcc
Confidence            344455566666799999999999764 444554444

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=84.35  E-value=22  Score=31.78  Aligned_cols=35  Identities=14%  Similarity=0.084  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHhhhhhhhchhhhhhcC-CCCccccCc
Q 024055           68 VPAALMAIYMTAINQLVDVKIDKINK-PDLPLASGD  102 (273)
Q Consensus        68 l~~~~~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~~G~  102 (273)
                      +..++-+..-...|++.|+|.|+.++ |.-|..-|.
T Consensus       169 ~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~  204 (282)
T PRK12848        169 LANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGR  204 (282)
T ss_pred             HHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhcc
Confidence            34444455555689999999999865 455555554

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=83.18  E-value=11  Score=33.84  Aligned_cols=45  Identities=16%  Similarity=0.142  Sum_probs=26.2

Q ss_pred             HHHHHhhhhhhhchhhhhhcCCCCccccCcCCHHHHHHHHHHHHHHH
Q 024055           73 MAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMS  119 (273)
Q Consensus        73 ~~~~~~~~Nd~~D~~~D~~n~~~Rpl~~G~is~~~a~~~~~~~~~l~  119 (273)
                      ........||+.|+|.|+.+++ |.++. ++.++.+..+...+..++
T Consensus       180 ~~~~~~~~n~~~D~~~D~~~G~-~Tl~v-~lG~~~a~~~~~~l~~~~  224 (293)
T PRK06080        180 LIGAVLLANNIRDIETDRENGK-NTLAV-RLGDKNARRLHAALLALA  224 (293)
T ss_pred             HHHHHHHhcCCCcchhHHHcCC-eeEEe-eECcHhHHHHHHHHHHHH
Confidence            3444457899999999998753 22322 334455555444444333

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=81.70  E-value=25  Score=31.78  Aligned_cols=34  Identities=12%  Similarity=0.157  Sum_probs=23.1

Q ss_pred             HHHHHHHHHhhhhhhhchhhhhhcC-CCCccccCc
Q 024055           69 PAALMAIYMTAINQLVDVKIDKINK-PDLPLASGD  102 (273)
Q Consensus        69 ~~~~~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~~G~  102 (273)
                      ..++.+..-...||+.|+|.|+.++ +.-|+.-|+
T Consensus       183 ~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~  217 (297)
T PRK12871        183 FFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGM  217 (297)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeech
Confidence            3344455556799999999999864 455555554

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=81.55  E-value=22  Score=31.51  Aligned_cols=41  Identities=20%  Similarity=0.383  Sum_probs=25.0

Q ss_pred             HHHHHHHhhhhhhhchhhhhhcC-CCCccccCcCCHHHHHHHHHH
Q 024055           71 ALMAIYMTAINQLVDVKIDKINK-PDLPLASGDFSIKTGVAITLT  114 (273)
Q Consensus        71 ~~~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~~G~is~~~a~~~~~~  114 (273)
                      ++...+-..+||+.|.|.|+.++ |.=|..-|   ++.+......
T Consensus       167 fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G---~~~t~~~~~~  208 (276)
T PRK12882        167 ALATLAREIIKDVEDIEGDRAEGARTLPILIG---VRKALYVAAA  208 (276)
T ss_pred             HHHHHHHHHHhhhhhhhhHHHcCCccccHHhh---HHHHHHHHHH
Confidence            34444556799999999999865 34444333   3444444433

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=80.67  E-value=3.4  Score=35.66  Aligned_cols=48  Identities=21%  Similarity=0.131  Sum_probs=29.8

Q ss_pred             HHHHHHHHHhccCChHhhHHc-Cccccce---ecchHHHHHHHHHHHHHhhh
Q 024055          205 CMSLAKALLKDLHDVDGDKEY-GIRTFSV---MLGKERMIKELLNLFKNMDL  252 (273)
Q Consensus       205 ~~~~~~~~~~~~~D~e~D~~~-G~~Tl~v---~lG~~~a~~~~~~~~~~~~~  252 (273)
                      +...+.+..||+.|+|.|+.+ +++.-|.   ++..+.+.+.+..+..++.+
T Consensus        34 ~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~~~~l~l~   85 (257)
T PF01040_consen   34 LLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALILLLLGLL   85 (257)
T ss_pred             HHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHHHHHHHHH
Confidence            344567889999999999985 3334444   33444455555555555544

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=80.56  E-value=15  Score=32.80  Aligned_cols=35  Identities=20%  Similarity=0.339  Sum_probs=21.8

Q ss_pred             HHhhhhhhhchhhhhhcCC-CCccccCcCCHHHHHHHHH
Q 024055           76 YMTAINQLVDVKIDKINKP-DLPLASGDFSIKTGVAITL  113 (273)
Q Consensus        76 ~~~~~Nd~~D~~~D~~n~~-~Rpl~~G~is~~~a~~~~~  113 (273)
                      .....||+.|+|.|+.+++ .=|..-|   ++.+..+..
T Consensus       176 ~i~~~nd~~D~~~D~~~G~~Tl~v~lG---~~~a~~l~~  211 (283)
T TIGR01476       176 GIMTLNDFKSVEGDRQLGLRSLPVMIG---VKRAAIVAV  211 (283)
T ss_pred             HHHHHHhccchhhHHHcCCcCcceEEc---HHHHHHHHH
Confidence            3457999999999998653 3333334   344444433

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=80.31  E-value=34  Score=31.14  Aligned_cols=34  Identities=18%  Similarity=0.043  Sum_probs=22.2

Q ss_pred             HHHHHHHHHhhhhhhhchhhhhhcC-CCCccccCc
Q 024055           69 PAALMAIYMTAINQLVDVKIDKINK-PDLPLASGD  102 (273)
Q Consensus        69 ~~~~~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~~G~  102 (273)
                      ..++.+..-..++++.|+|.|+..+ |.-|..-|.
T Consensus       200 ~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~  234 (314)
T PRK12878        200 GSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGD  234 (314)
T ss_pred             HHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhch
Confidence            3444455555678999999999754 455555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	273
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 4e-04
 Identities = 42/331 (12%), Positives = 82/331 (24%), Gaps = 101/331 (30%)

Query: 3   LGRVKSEDDNKLKSFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTF 62
           L    S +           L+ L+ L     PN  +    +      L + ++       
Sbjct: 189 LKNCNSPET---------VLEMLQKLLYQIDPNWTSRSDHSSNIK--LRIHSIQAELRRL 237

Query: 63  FMETVVPAALMAIYMTAINQLV--DVKIDKINKP-DLP----LASGDFSIKTGVAITLTC 115
                    L          LV  +V+  K     +L     L +    +   ++   T 
Sbjct: 238 LKSKPYENCL----------LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287

Query: 116 -----------------AMMSLAMGIMIGS-P-------PLAWGLILWFILVTAYSIDLP 150
                            +++   +       P       P    +I       A SI   
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII-------AESIRDG 340

Query: 151 FLRWKR------NAFLAAISIMIG----------YGVGIQFSFF---IHIQKYVLGRSVV 191
              W        +     I   +           +    + S F    HI   +L  S++
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF---DRLSVFPPSAHIPTILL--SLI 395

Query: 192 ITRSLIFTTGVITCMSLAKALL-KD-------LHDVDGDKEYGIRTFSVMLGKERMIKEL 243
               +     V+       +L+ K        +  +  + +             R I + 
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK---VKLENEYALHRSIVDH 452

Query: 244 LNLFKNMDLEDESPLPGEG-IDKPRGCEHVG 273
            N+ K  D +D  P   +          H+G
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYF-----YSHIG 478

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	273
d1rtra_	290	Farnesyl diphosphate synthase (geranyltranstransfe	86.07

>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Isoprenyl diphosphate synthases
domain: Farnesyl diphosphate synthase (geranyltranstransferase)
species: Staphylococcus aureus [TaxId: 1280]

Probab=86.07  E-value=1.8  Score=35.45  Aligned_cols=54  Identities=7%  Similarity=0.057  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHhhhhhhhchhhhhhcCCCCccccCcCCHHHHHHHHHHHHHHHHHH
Q 024055           68 VPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAM  122 (273)
Q Consensus        68 l~~~~~~~~~~~~Nd~~D~~~D~~n~~~Rpl~~G~is~~~a~~~~~~~~~l~l~l  122 (273)
                      .+.=++|.++-+..|+.|.|.|.. ++.+|-.........+...+-.+...++-+
T Consensus        68 ~avEllH~asLIHDDI~d~D~~~~-RRg~pt~~~~~g~~~Ail~Gd~l~~~a~~l  121 (290)
T d1rtra_          68 IALEMIHTYSLIHDDLPAMDNDDY-RRGKLTNHKVYGEWTAILAGDALLTKAFEL  121 (290)
T ss_dssp             HHHHHHHHHHHHHHHSTTTTCCSE-ETTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcchhhhhhhhh-hhcchhhHHHhhhhHHHHcCcchhHHHHHH
Confidence            444578888889999998887764 345666555666666666555555444443