Citrus Sinensis ID: 024062

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270---
Protein Sequence
MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYK
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHEEEc
Coil and Loop (DISEMBL)
MRTTFPEYVVALATIVGSVLFSIFGgvgiaclplglifsfirrpkaviTRSQYIKEATELGKKARELKKAADTLHqeersgskgrkwrkNVKSVEKELLQLEEDVKLLEEMypqgekaetsWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLinpplhpflnEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYK
Flexible Loop (DISEMBL)
MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAAdtlhqeersgskgrkwrknvKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYK
Low Complexity Region (SEG)
MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTaafaffcfylllaVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYK
Disordered region (IsUnstruct)
****FPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIK*************************************************VKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLY*
Disordered Region (DISOPRED)
*RTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITR********************************************EKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYK
Disordered Region (DISEMBL)
MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELK***********************KSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYK
Disordered Region (DISPRO)
*RTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYK
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKExxxxxxxxxxxxxxxxxxxxxERSGSKxxxxxxxxxxxxxxxxxxxxxxxxxxxxYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	273	2.2.26 [Sep-21-2011]
Q9M028	509	LIMR family protein At5g0	yes	no	1.0	0.536	0.919	1e-147
Q9SR93	509	LIMR family protein At3g0	yes	no	1.0	0.536	0.915	1e-147
Q658I5	510	LIMR family protein Os06g	yes	no	1.0	0.535	0.849	1e-129
D8TFA8	410	LIMR family protein SELMO	N/A	no	0.758	0.504	0.589	6e-70
D8S067	264	LIMR family protein SELMO	N/A	no	0.663	0.685	0.490	7e-56
D8RQM9	185	CASP-like protein SELMODR	N/A	no	0.652	0.962	0.535	4e-55
D8TFB0	321	LIMR family protein SELMO	N/A	no	0.659	0.560	0.509	3e-52
D8S069	187	CASP-like protein SELMODR	N/A	no	0.663	0.967	0.522	8e-52
D8S072	166	CASP-like protein SELMODR	N/A	no	0.604	0.993	0.513	1e-48
Q54QP7	507	LIMR family protein DDB_G	yes	no	0.959	0.516	0.357	6e-46

>sp|Q9M028|LMBD2_ARATH LIMR family protein At5g01460 OS=Arabidopsis thaliana GN=At5g01460 PE=2 SV=1

 Score =  521 bits (1343), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 251/273 (91%), Positives = 266/273 (97%)

Query: 1   MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
           MRTTFPEYVVALATIVGSVLF+IFGGVGIACLPLGLI +FIRRPKAVITRSQYIKEATEL
Sbjct: 200 MRTTFPEYVVALATIVGSVLFTIFGGVGIACLPLGLITAFIRRPKAVITRSQYIKEATEL 259

Query: 61  GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
           GKKAR+LKKAAD LHQEERSG+KGRKWRKNVK+VEKELLQLEEDV LLEEMYPQGE+AET
Sbjct: 260 GKKARDLKKAADALHQEERSGAKGRKWRKNVKAVEKELLQLEEDVNLLEEMYPQGEQAET 319

Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
           +WA TVLGYLAK VLGILG IVSVAW+AHI+IYLL++PPL PFLNEVFIKLDD+WGLLGT
Sbjct: 320 AWAFTVLGYLAKFVLGILGLIVSVAWIAHIIIYLLVDPPLSPFLNEVFIKLDDVWGLLGT 379

Query: 181 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 240
           AAFAFFCFYLLLAVIAGAMMLGL+LVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF
Sbjct: 380 AAFAFFCFYLLLAVIAGAMMLGLKLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 439

Query: 241 CSTAFGYYAQATAAQEIFGHTLESLRGIKYLYK 273
           C+TAFGYYAQATAAQEIFGHTL+SLRGIKYLYK
Sbjct: 440 CATAFGYYAQATAAQEIFGHTLQSLRGIKYLYK 472

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SR93|LMBD1_ARATH LIMR family protein At3g08930 OS=Arabidopsis thaliana GN=At3g08930 PE=2 SV=2

 Score =  520 bits (1338), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 250/273 (91%), Positives = 266/273 (97%)

Query: 1   MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
           MRTTFPEYVVALATIVGSVLF+IFGGVGIACLPLGLI +FIRRPKAVITRSQYIKEATEL
Sbjct: 200 MRTTFPEYVVALATIVGSVLFTIFGGVGIACLPLGLITAFIRRPKAVITRSQYIKEATEL 259

Query: 61  GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
           GKKARELKKAAD LHQEERSG+KGRKWRKNVK+VEKELLQLEEDV LLEEMYPQGE+AET
Sbjct: 260 GKKARELKKAADGLHQEERSGAKGRKWRKNVKAVEKELLQLEEDVNLLEEMYPQGEQAET 319

Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
           +WA TVLGYLAK +LGI+G IVS+AWVAHI+IYLL++PPL PFLNEVFIKLDD+WGLLGT
Sbjct: 320 AWAFTVLGYLAKFILGIVGLIVSIAWVAHIIIYLLVDPPLSPFLNEVFIKLDDVWGLLGT 379

Query: 181 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 240
           AAFAFFCFYLLLAVIAGAMMLGL+LVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF
Sbjct: 380 AAFAFFCFYLLLAVIAGAMMLGLKLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 439

Query: 241 CSTAFGYYAQATAAQEIFGHTLESLRGIKYLYK 273
           C+TAFGYYAQATAAQEIFGHTL+SLRGIKYLYK
Sbjct: 440 CATAFGYYAQATAAQEIFGHTLQSLRGIKYLYK 472

Arabidopsis thaliana (taxid: 3702)

>sp|Q658I5|LMBD1_ORYSJ LIMR family protein Os06g0128200 OS=Oryza sativa subsp. japonica GN=Os06g0128200 PE=2 SV=1

 Score =  461 bits (1185), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 232/273 (84%), Positives = 256/273 (93%)

Query: 1   MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
           MR TFPEYVVALATIVGSVLF+IFGGVGIACLPLGLIFSF+RRPKAVITRSQYIKEATEL
Sbjct: 201 MRATFPEYVVALATIVGSVLFTIFGGVGIACLPLGLIFSFVRRPKAVITRSQYIKEATEL 260

Query: 61  GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
           GKKARELKKAA+ LHQEE+SG KGRKWRKNVK++ KEL+ LE+D+K LEEMYPQGE+AE 
Sbjct: 261 GKKARELKKAAEALHQEEKSGKKGRKWRKNVKALGKELVLLEDDMKALEEMYPQGEQAEA 320

Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
           +WALTVLGY+ KL+ G +G I+S+AWVAHIVIYLLI+PPL  FLNE+F+KLD +WGLLGT
Sbjct: 321 TWALTVLGYIGKLLFGAVGLIISIAWVAHIVIYLLIDPPLSSFLNEIFVKLDGVWGLLGT 380

Query: 181 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 240
           AAFAFFCFYLL+AVIAG MMLGL+LVFITIHPMKWG TLMNSFLFNVGLILLCSISVIQF
Sbjct: 381 AAFAFFCFYLLIAVIAGEMMLGLKLVFITIHPMKWGGTLMNSFLFNVGLILLCSISVIQF 440

Query: 241 CSTAFGYYAQATAAQEIFGHTLESLRGIKYLYK 273
           C+TAF YYAQATAAQEIFGHTL+SLRGIKYLYK
Sbjct: 441 CATAFAYYAQATAAQEIFGHTLQSLRGIKYLYK 473

Oryza sativa subsp. japonica (taxid: 39947)

>sp|D8TFA8|LMBD3_SELML LIMR family protein SELMODRAFT_432208 OS=Selaginella moellendorffii GN=SELMODRAFT_432208 PE=3 SV=2

 Score =  264 bits (674), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 125/212 (58%), Positives = 166/212 (78%), Gaps = 5/212 (2%)

Query: 8   YVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKAREL 67
           YV+ L TI+GS+LF +FGGVG+A LPL LIF+F  RPK VITR+QY+KEAT+L K++ EL
Sbjct: 168 YVITLNTIIGSILFMMFGGVGMATLPLSLIFAFKNRPKCVITRAQYVKEATDLAKRSNEL 227

Query: 68  KKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVL 127
           K A   L +EER G KGR +RKNVK V++EL+ LE+DV+ L E +PQGEK      LTVL
Sbjct: 228 KTATLGLQREERGGKKGRMFRKNVKKVQQELVFLEDDVEALNEAFPQGEK-----TLTVL 282

Query: 128 GYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFC 187
            YLAKLV GI+G  +S+ W+ HI++++L+NPP  PFLN+VFI+LD + GLLGT  FA FC
Sbjct: 283 FYLAKLVFGIVGLALSIIWLLHIIVFMLVNPPAFPFLNQVFIQLDTVGGLLGTTTFAIFC 342

Query: 188 FYLLLAVIAGAMMLGLRLVFITIHPMKWGATL 219
           +YL+++VI+G M LG+RL+F++IHPMK+  TL
Sbjct: 343 YYLVMSVISGKMHLGMRLLFLSIHPMKYQGTL 374

Selaginella moellendorffii (taxid: 88036)

>sp|D8S067|LMBD2_SELML LIMR family protein SELMODRAFT_416716 OS=Selaginella moellendorffii GN=SELMODRAFT_416716 PE=3 SV=1

 Score =  217 bits (552), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 107/218 (49%), Positives = 145/218 (66%), Gaps = 37/218 (16%)

Query: 2   RTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIK-----E 56
           R  FP Y++AL+TI+ S+LF++FGGVG+A LPL LIF+F  RPK V TR+QY+K     E
Sbjct: 79  RAPFPTYMIALSTIIRSILFTMFGGVGMATLPLSLIFAFKNRPKCVTTRAQYVKVMALQE 138

Query: 57  ATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGE 116
           AT+L K++ ELK A   L +EER G KGRK+RKNVK V++                    
Sbjct: 139 ATDLAKRSNELKTATLGLQREERGGKKGRKFRKNVKKVQQ-------------------- 178

Query: 117 KAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWG 176
            A+TSWALTV               +S+ W+ HI++++L+NPP  PFLN+VFI+LD  WG
Sbjct: 179 -ADTSWALTVRN-----------LALSIIWLLHIIVFMLVNPPAFPFLNQVFIQLDSAWG 226

Query: 177 LLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK 214
           LLGT  FA FC+YL+++VI+G M LG+RL+ ++IHPMK
Sbjct: 227 LLGTTTFAIFCYYLVMSVISGEMHLGMRLLLLSIHPMK 264

Selaginella moellendorffii (taxid: 88036)

>sp|D8RQM9|CSPLJ_SELML CASP-like protein SELMODRAFT_413556 OS=Selaginella moellendorffii GN=SELMODRAFT_413556 PE=3 SV=1

 Score =  214 bits (546), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 113/211 (53%), Positives = 145/211 (68%), Gaps = 33/211 (15%)

Query: 29  IACLPLGLIFSFIRRPKAVITRSQYIK-----EATELGKKARELKKAADTLHQEERSGSK 83
           +A LPL LIF+F  RPK VITR+QY+K     E T   K++ EL             GS 
Sbjct: 1   MATLPLSLIFAFKNRPKCVITRAQYVKVMAWQEVT--AKRSNEL-------------GSP 45

Query: 84  GRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVS 143
            R+     KS  +EL+ LE+DV+ L E +PQGEKA+TSWA+TVL YLAKLV GILG  +S
Sbjct: 46  TRR-----KSSIQELVFLEDDVQALNEAFPQGEKADTSWAVTVLFYLAKLVFGILGLALS 100

Query: 144 VAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGL 203
           + W+ HI++++L+NPP  PFLN+VFI+LD  WGLLGT AFA FC+YL+++VI+G M    
Sbjct: 101 IIWLLHIIVFMLVNPPAFPFLNQVFIQLDSAWGLLGTTAFAIFCYYLIMSVISGEMH--- 157

Query: 204 RLVFITIHPMKWGATLMNSFLFNVGLILLCS 234
                +IHPMK+  TLMNSFLFNV +ILLCS
Sbjct: 158 -----SIHPMKYQGTLMNSFLFNVAIILLCS 183

Selaginella moellendorffii (taxid: 88036)

>sp|D8TFB0|LMBD1_SELML LIMR family protein SELMODRAFT_432210 OS=Selaginella moellendorffii GN=SELMODRAFT_432210 PE=3 SV=1

 Score =  205 bits (521), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 107/210 (50%), Positives = 141/210 (67%), Gaps = 30/210 (14%)

Query: 5   FPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKA 64
           FP YV+AL     S+LF++FGGV IA LPL LIF+F  RPK V+     ++EAT+L K +
Sbjct: 142 FPTYVIAL-----SILFTMFGGVRIATLPLSLIFAFKNRPKCVMA----LQEATDLAKSS 192

Query: 65  RELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAETSWAL 124
             LKK    L +EER G KGRK RKNVK V++E                     +TSWAL
Sbjct: 193 NVLKKVTLGLQREERGGKKGRKLRKNVKKVQQE---------------------DTSWAL 231

Query: 125 TVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFA 184
           TVL YLAKLV GILG  +S+ W+ HI++++L+NPP  PFLN+VFI+LD    LLGT  FA
Sbjct: 232 TVLFYLAKLVFGILGLALSIIWLLHILVFMLVNPPAFPFLNQVFIQLDSAGDLLGTTPFA 291

Query: 185 FFCFYLLLAVIAGAMMLGLRLVFITIHPMK 214
            FC+Y +++VI+G M LG++L+F++IHPMK
Sbjct: 292 IFCYYFVMSVISGEMHLGMKLLFLSIHPMK 321

Selaginella moellendorffii (taxid: 88036)

>sp|D8S069|CSPLI_SELML CASP-like protein SELMODRAFT_416718 OS=Selaginella moellendorffii GN=SELMODRAFT_416718 PE=3 SV=1

 Score =  203 bits (517), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 103/197 (52%), Positives = 136/197 (69%), Gaps = 16/197 (8%)

Query: 23  IFGGVGIACLPLGLIFSFIRRPKAVITRSQYIK-----EATELGKKARELKKAADTLHQE 77
           +FGGVG+A LPL LIF+F  RPK VITR+QY+K     E T+L K++ EL         E
Sbjct: 2   MFGGVGMATLPLSLIFAFKNRPKCVITRAQYVKVMAWQEVTDLAKRSNELGSPTRRKRLE 61

Query: 78  ERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGI 137
           ER+    +         ++EL+ LE+DV+ L E +PQGEKA+TSWALTVL YLAKLV GI
Sbjct: 62  ERTKVSEKC---EESPADQELVFLEDDVQALNEAFPQGEKADTSWALTVLFYLAKLVFGI 118

Query: 138 LGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAG 197
           LG  +SV W+ HI++++L+NPP  PFLN+VFI+LD  WGLLGT AFA FC+YL+++VI+G
Sbjct: 119 LGLALSVIWLLHIIVFMLVNPPAFPFLNQVFIQLDSAWGLLGTTAFAIFCYYLVMSVISG 178

Query: 198 AMMLGLRLVFITIHPMK 214
            M         +I+PMK
Sbjct: 179 EMH--------SIYPMK 187

Selaginella moellendorffii (taxid: 88036)

>sp|D8S072|CSPLK_SELML CASP-like protein SELMODRAFT_416721 OS=Selaginella moellendorffii GN=SELMODRAFT_416721 PE=3 SV=1

 Score =  192 bits (489), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 96/187 (51%), Positives = 130/187 (69%), Gaps = 22/187 (11%)

Query: 29  IACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWR 88
           +A LP+ L+F+F  RPK VITR+QY+KEAT+L K++ EL             GS  R+  
Sbjct: 1   MATLPVSLVFAFKNRPKCVITRAQYVKEATDLAKRSNEL-------------GSPTRRKD 47

Query: 89  KNVKSVE-KELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWV 147
           ++   +  +EL+ LE+DV+ L E +PQGEKA+TSWA+TVL  LAKLV GILG  +SV W 
Sbjct: 48  ESFGKISIQELVFLEDDVQALNEAFPQGEKADTSWAVTVLFSLAKLVFGILGLALSVIWP 107

Query: 148 AHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVF 207
            HI++++L+NPP  PFLN+VFI+LD  WGLLGT AFA FC+YL+++VI+G M        
Sbjct: 108 LHIIVFMLVNPPAFPFLNQVFIQLDSAWGLLGTTAFAIFCYYLVMSVISGEMH------- 160

Query: 208 ITIHPMK 214
            +IHPMK
Sbjct: 161 -SIHPMK 166

Selaginella moellendorffii (taxid: 88036)

>sp|Q54QP7|Y3707_DICDI LIMR family protein DDB_G0283707 OS=Dictyostelium discoideum GN=DDB_G0283707 PE=3 SV=2

 Score =  184 bits (467), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 98/274 (35%), Positives = 153/274 (55%), Gaps = 12/274 (4%)

Query: 2   RTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELG 61
           R +   +++ +    G +LF IFGG+G+  LP  +I  F  RP+  I   +Y++   ++G
Sbjct: 212 RVSIALFIITMVAFFGWLLFIIFGGIGLVALPFDMIGDFKNRPQR-IPYDKYLERKKKIG 270

Query: 62  KKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYP-QGEKAET 120
           ++A EL +   T+      G   ++ RKN     + +  LEED + L+  Y  QG K   
Sbjct: 271 ERATELVEIGKTIQSRTSGGIMSKRDRKNYNRFRQAIFLLEEDYERLKISYKRQGGK--- 327

Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINP-PLHPFLNEVFIKLDDLWGLLG 179
                V+ Y A+   G +   VS+ W+ HI+IY++  P P HPFLN + I L++ WG LG
Sbjct: 328 -----VIFYYAQFFGGFVALGVSLGWLLHIIIYMITAPEPFHPFLNSLVIALNNAWGFLG 382

Query: 180 TAAFAFFCFYLLLAVIAGAMMLGLRLVFI-TIHPMKWGATLMNSFLFNVGLILLCSISVI 238
              +    FYLL  V+ G    GLRL F+  IHPM+ G T+MN+FLFNVGLIL+ S+S+ 
Sbjct: 383 VIVYGLLSFYLLFCVVKGNFKFGLRLFFLFPIHPMRVGNTMMNAFLFNVGLILITSVSIT 442

Query: 239 QFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLY 272
            FC+ AF  +   TA   +F   +++L+ +K+ +
Sbjct: 443 HFCTMAFSQFTSTTAINSLFETAVKNLKILKWFW 476

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	273
255574363	509	conserved hypothetical protein [Ricinus	1.0	0.536	0.959	1e-149
225440692	509	PREDICTED: LIMR family protein At5g01460	1.0	0.536	0.952	1e-149
224087748	509	predicted protein [Populus trichocarpa]	1.0	0.536	0.948	1e-148
449461773	509	PREDICTED: LIMR family protein At3g08930	1.0	0.536	0.952	1e-148
224140417	509	predicted protein [Populus trichocarpa]	1.0	0.536	0.948	1e-148
15240980	509	LMBR1-like membrane protein [Arabidopsis	1.0	0.536	0.919	1e-145
297829416	509	hypothetical protein ARALYDRAFT_478196 [	1.0	0.536	0.919	1e-145
6403492	482	unknown protein [Arabidopsis thaliana]	1.0	0.566	0.915	1e-145
297810257	509	LMBR1 integral membrane family protein [	1.0	0.536	0.912	1e-145
145338276	509	LMBR1-like membrane protein [Arabidopsis	1.0	0.536	0.915	1e-145

>gi|255574363|ref|XP_002528095.1| conserved hypothetical protein [Ricinus communis] gi|223532484|gb|EEF34274.1| conserved hypothetical protein [Ricinus communis]

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 262/273 (95%), Positives = 267/273 (97%)

Query: 1   MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
           MRTTFPEYVVALATIVGSVLF+IFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL
Sbjct: 200 MRTTFPEYVVALATIVGSVLFAIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 259

Query: 61  GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
           GKKARELKKAAD LHQEERSGSKGRKWRKNVK+VEKEL QLEEDVKLLEEMYPQGEKAET
Sbjct: 260 GKKARELKKAADALHQEERSGSKGRKWRKNVKAVEKELFQLEEDVKLLEEMYPQGEKAET 319

Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
           SWALTVLGYLAKLVLGILG IVSVAWVAHIVIYLLI+PPL PFLNEVFIKLDD+WGLLGT
Sbjct: 320 SWALTVLGYLAKLVLGILGLIVSVAWVAHIVIYLLISPPLSPFLNEVFIKLDDVWGLLGT 379

Query: 181 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 240
            AFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWG TLMNSFLFNVGLILLCSISVIQF
Sbjct: 380 VAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGGTLMNSFLFNVGLILLCSISVIQF 439

Query: 241 CSTAFGYYAQATAAQEIFGHTLESLRGIKYLYK 273
           CSTAFGYYAQATAAQEIFGHTL+SLRGIKYLYK
Sbjct: 440 CSTAFGYYAQATAAQEIFGHTLQSLRGIKYLYK 472

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440692|ref|XP_002280330.1| PREDICTED: LIMR family protein At5g01460 [Vitis vinifera] gi|297740207|emb|CBI30389.3| unnamed protein product [Vitis vinifera]

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 260/273 (95%), Positives = 269/273 (98%)

Query: 1   MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
           MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL
Sbjct: 200 MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 259

Query: 61  GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
           GKKAR+LKKAAD LHQEERSGSKGRKWRKNVK+VEKELLQLE+DVK LEEMYPQGEKAET
Sbjct: 260 GKKARDLKKAADALHQEERSGSKGRKWRKNVKAVEKELLQLEDDVKALEEMYPQGEKAET 319

Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
           +WALTVLGYLAKLVLGILG IVSVAW+AHIVIYLLI+PPL PFLNEVFIKLDD+WGLLGT
Sbjct: 320 TWALTVLGYLAKLVLGILGLIVSVAWIAHIVIYLLIDPPLSPFLNEVFIKLDDVWGLLGT 379

Query: 181 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 240
           AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF
Sbjct: 380 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 439

Query: 241 CSTAFGYYAQATAAQEIFGHTLESLRGIKYLYK 273
           C+TAFGYYAQATAAQEIFGHTLESL+GIKYLYK
Sbjct: 440 CATAFGYYAQATAAQEIFGHTLESLKGIKYLYK 472

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087748|ref|XP_002308217.1| predicted protein [Populus trichocarpa] gi|222854193|gb|EEE91740.1| predicted protein [Populus trichocarpa]

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 259/273 (94%), Positives = 267/273 (97%)

Query: 1   MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
           MR TFPEYVVALATIVGSVLF+IFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATE 
Sbjct: 200 MRATFPEYVVALATIVGSVLFAIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEF 259

Query: 61  GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
           GKKARELKKAAD LHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET
Sbjct: 260 GKKARELKKAADALHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 319

Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
           +WALTVLGYLAKLVLGILG IVSVAWVAHI+IYLL++PPL PFLNEVFIKLDD+WGLLGT
Sbjct: 320 AWALTVLGYLAKLVLGILGLIVSVAWVAHIIIYLLVDPPLSPFLNEVFIKLDDIWGLLGT 379

Query: 181 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 240
            AFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF
Sbjct: 380 VAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 439

Query: 241 CSTAFGYYAQATAAQEIFGHTLESLRGIKYLYK 273
           C+TAFGYYAQATAAQEIFGHTL+SLRGIKYLYK
Sbjct: 440 CATAFGYYAQATAAQEIFGHTLQSLRGIKYLYK 472

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461773|ref|XP_004148616.1| PREDICTED: LIMR family protein At3g08930-like [Cucumis sativus] gi|449522716|ref|XP_004168372.1| PREDICTED: LIMR family protein At3g08930-like [Cucumis sativus]

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 260/273 (95%), Positives = 268/273 (98%)

Query: 1   MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
           MRTTFPEYVVALATIVGSVLF+IFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL
Sbjct: 200 MRTTFPEYVVALATIVGSVLFAIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 259

Query: 61  GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
           GKKARELKKAAD LHQEERSGSKGRKWRKNVK+VEKELLQLEEDVKLLEEMYPQGEKAET
Sbjct: 260 GKKARELKKAADGLHQEERSGSKGRKWRKNVKAVEKELLQLEEDVKLLEEMYPQGEKAET 319

Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
           +WALTVLGYLAKLVLG+LG IVSVAWV HIVIYLLI+PPL PFLNEVFIKLDD+WGLLGT
Sbjct: 320 AWALTVLGYLAKLVLGVLGLIVSVAWVVHIVIYLLIDPPLSPFLNEVFIKLDDVWGLLGT 379

Query: 181 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 240
           AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF
Sbjct: 380 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 439

Query: 241 CSTAFGYYAQATAAQEIFGHTLESLRGIKYLYK 273
           CSTAF YYA+ATAAQEIFGHTL+SLRGIKYLYK
Sbjct: 440 CSTAFAYYARATAAQEIFGHTLQSLRGIKYLYK 472

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140417|ref|XP_002323579.1| predicted protein [Populus trichocarpa] gi|222868209|gb|EEF05340.1| predicted protein [Populus trichocarpa]

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 259/273 (94%), Positives = 268/273 (98%)

Query: 1   MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
           MR TFPEYVVALATIVGSVLF+IFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL
Sbjct: 200 MRATFPEYVVALATIVGSVLFAIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 259

Query: 61  GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
           GKKARELKKAAD LHQEERSG+KGRKWRKNVK+VEKELLQLEEDVKLLEE+YPQGEKAET
Sbjct: 260 GKKARELKKAADVLHQEERSGNKGRKWRKNVKAVEKELLQLEEDVKLLEEVYPQGEKAET 319

Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
           SWALTVLGYLAKLVLGILG IVSVAWVAHI+IYLLI+PPL PFLNEVFIKLDD+WGLLGT
Sbjct: 320 SWALTVLGYLAKLVLGILGLIVSVAWVAHIIIYLLIDPPLSPFLNEVFIKLDDIWGLLGT 379

Query: 181 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 240
            AFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF
Sbjct: 380 VAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 439

Query: 241 CSTAFGYYAQATAAQEIFGHTLESLRGIKYLYK 273
           C+TAFGYYAQATAAQEIFGHTL+SLRGIKYLYK
Sbjct: 440 CATAFGYYAQATAAQEIFGHTLQSLRGIKYLYK 472

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240980|ref|NP_195766.1| LMBR1-like membrane protein [Arabidopsis thaliana] gi|75181394|sp|Q9M028.1|LMBD2_ARATH RecName: Full=LIMR family protein At5g01460 gi|7320724|emb|CAB81929.1| putative protein [Arabidopsis thaliana] gi|18176296|gb|AAL60018.1| unknown protein [Arabidopsis thaliana] gi|20465353|gb|AAM20080.1| unknown protein [Arabidopsis thaliana] gi|332002964|gb|AED90347.1| LMBR1-like membrane protein [Arabidopsis thaliana]

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 251/273 (91%), Positives = 266/273 (97%)

Query: 1   MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
           MRTTFPEYVVALATIVGSVLF+IFGGVGIACLPLGLI +FIRRPKAVITRSQYIKEATEL
Sbjct: 200 MRTTFPEYVVALATIVGSVLFTIFGGVGIACLPLGLITAFIRRPKAVITRSQYIKEATEL 259

Query: 61  GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
           GKKAR+LKKAAD LHQEERSG+KGRKWRKNVK+VEKELLQLEEDV LLEEMYPQGE+AET
Sbjct: 260 GKKARDLKKAADALHQEERSGAKGRKWRKNVKAVEKELLQLEEDVNLLEEMYPQGEQAET 319

Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
           +WA TVLGYLAK VLGILG IVSVAW+AHI+IYLL++PPL PFLNEVFIKLDD+WGLLGT
Sbjct: 320 AWAFTVLGYLAKFVLGILGLIVSVAWIAHIIIYLLVDPPLSPFLNEVFIKLDDVWGLLGT 379

Query: 181 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 240
           AAFAFFCFYLLLAVIAGAMMLGL+LVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF
Sbjct: 380 AAFAFFCFYLLLAVIAGAMMLGLKLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 439

Query: 241 CSTAFGYYAQATAAQEIFGHTLESLRGIKYLYK 273
           C+TAFGYYAQATAAQEIFGHTL+SLRGIKYLYK
Sbjct: 440 CATAFGYYAQATAAQEIFGHTLQSLRGIKYLYK 472

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829416|ref|XP_002882590.1| hypothetical protein ARALYDRAFT_478196 [Arabidopsis lyrata subsp. lyrata] gi|297328430|gb|EFH58849.1| hypothetical protein ARALYDRAFT_478196 [Arabidopsis lyrata subsp. lyrata]

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 251/273 (91%), Positives = 266/273 (97%)

Query: 1   MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
           MRTTFPEYVVALATIVGSVLF+IFGGVGIACLPLGLI +FIRRPKAVITRSQYIKEATEL
Sbjct: 200 MRTTFPEYVVALATIVGSVLFTIFGGVGIACLPLGLITAFIRRPKAVITRSQYIKEATEL 259

Query: 61  GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
           GKKARELKKAAD LHQEERSG+KGRKWRKNVK+VEKELLQLEEDV LLEEMYPQGE+AET
Sbjct: 260 GKKARELKKAADGLHQEERSGAKGRKWRKNVKAVEKELLQLEEDVNLLEEMYPQGEQAET 319

Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
           +WA TVLGYLAK +LGILG IVS+AWVAHI+IYLL++PPL PFLNEVFIKLDD+WGLLGT
Sbjct: 320 AWAFTVLGYLAKFILGILGLIVSIAWVAHIIIYLLVDPPLSPFLNEVFIKLDDVWGLLGT 379

Query: 181 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 240
           AAFAFFCFYLLLAVIAGAMMLGL+LVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF
Sbjct: 380 AAFAFFCFYLLLAVIAGAMMLGLKLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 439

Query: 241 CSTAFGYYAQATAAQEIFGHTLESLRGIKYLYK 273
           C+TAFGYYAQATAAQEIFGHTL+SLRGIKYLYK
Sbjct: 440 CATAFGYYAQATAAQEIFGHTLQSLRGIKYLYK 472

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6403492|gb|AAF07832.1|AC010871_8 unknown protein [Arabidopsis thaliana]

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 250/273 (91%), Positives = 266/273 (97%)

Query: 1   MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
           MRTTFPEYVVALATIVGSVLF+IFGGVGIACLPLGLI +FIRRPKAVITRSQYIKEATEL
Sbjct: 184 MRTTFPEYVVALATIVGSVLFTIFGGVGIACLPLGLITAFIRRPKAVITRSQYIKEATEL 243

Query: 61  GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
           GKKARELKKAAD LHQEERSG+KGRKWRKNVK+VEKELLQLEEDV LLEEMYPQGE+AET
Sbjct: 244 GKKARELKKAADGLHQEERSGAKGRKWRKNVKAVEKELLQLEEDVNLLEEMYPQGEQAET 303

Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
           +WA TVLGYLAK +LGI+G IVS+AWVAHI+IYLL++PPL PFLNEVFIKLDD+WGLLGT
Sbjct: 304 AWAFTVLGYLAKFILGIVGLIVSIAWVAHIIIYLLVDPPLSPFLNEVFIKLDDVWGLLGT 363

Query: 181 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 240
           AAFAFFCFYLLLAVIAGAMMLGL+LVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF
Sbjct: 364 AAFAFFCFYLLLAVIAGAMMLGLKLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 423

Query: 241 CSTAFGYYAQATAAQEIFGHTLESLRGIKYLYK 273
           C+TAFGYYAQATAAQEIFGHTL+SLRGIKYLYK
Sbjct: 424 CATAFGYYAQATAAQEIFGHTLQSLRGIKYLYK 456

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810257|ref|XP_002873012.1| LMBR1 integral membrane family protein [Arabidopsis lyrata subsp. lyrata] gi|297318849|gb|EFH49271.1| LMBR1 integral membrane family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 249/273 (91%), Positives = 266/273 (97%)

Query: 1   MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
           MRTTFPEYVVALATIVGSVLF+IFGGVGIACLPLGLI +FIRRPKAVITRSQYIKEATEL
Sbjct: 200 MRTTFPEYVVALATIVGSVLFTIFGGVGIACLPLGLITAFIRRPKAVITRSQYIKEATEL 259

Query: 61  GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
           GKKAR+LKKAAD LHQEERSG+KGRKWRKNVK+VEKELLQLEEDV LLEEMYPQGE+AET
Sbjct: 260 GKKARDLKKAADALHQEERSGAKGRKWRKNVKAVEKELLQLEEDVNLLEEMYPQGEQAET 319

Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
           +WA TVLGYLAK +LGILG IVSVAW+AHI+IYLL++PPL PFLNEVFIKLDD+WGLLGT
Sbjct: 320 AWAFTVLGYLAKFILGILGLIVSVAWIAHIIIYLLVDPPLSPFLNEVFIKLDDVWGLLGT 379

Query: 181 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 240
           AAFAFFCFYLLL+VIAGAMMLGL+LVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF
Sbjct: 380 AAFAFFCFYLLLSVIAGAMMLGLKLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 439

Query: 241 CSTAFGYYAQATAAQEIFGHTLESLRGIKYLYK 273
           C+TAFGYYAQATAAQEIFGHTL+SLRGIKYLYK
Sbjct: 440 CATAFGYYAQATAAQEIFGHTLQSLRGIKYLYK 472

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145338276|ref|NP_566338.2| LMBR1-like membrane protein [Arabidopsis thaliana] gi|226789815|sp|Q9SR93.2|LMBD1_ARATH RecName: Full=LIMR family protein At3g08930 gi|14334836|gb|AAK59596.1| unknown protein [Arabidopsis thaliana] gi|24417362|gb|AAN60291.1| unknown [Arabidopsis thaliana] gi|56550703|gb|AAV97805.1| At3g08930 [Arabidopsis thaliana] gi|332641175|gb|AEE74696.1| LMBR1-like membrane protein [Arabidopsis thaliana]

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 250/273 (91%), Positives = 266/273 (97%)

Query: 1   MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
           MRTTFPEYVVALATIVGSVLF+IFGGVGIACLPLGLI +FIRRPKAVITRSQYIKEATEL
Sbjct: 200 MRTTFPEYVVALATIVGSVLFTIFGGVGIACLPLGLITAFIRRPKAVITRSQYIKEATEL 259

Query: 61  GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
           GKKARELKKAAD LHQEERSG+KGRKWRKNVK+VEKELLQLEEDV LLEEMYPQGE+AET
Sbjct: 260 GKKARELKKAADGLHQEERSGAKGRKWRKNVKAVEKELLQLEEDVNLLEEMYPQGEQAET 319

Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
           +WA TVLGYLAK +LGI+G IVS+AWVAHI+IYLL++PPL PFLNEVFIKLDD+WGLLGT
Sbjct: 320 AWAFTVLGYLAKFILGIVGLIVSIAWVAHIIIYLLVDPPLSPFLNEVFIKLDDVWGLLGT 379

Query: 181 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 240
           AAFAFFCFYLLLAVIAGAMMLGL+LVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF
Sbjct: 380 AAFAFFCFYLLLAVIAGAMMLGLKLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 439

Query: 241 CSTAFGYYAQATAAQEIFGHTLESLRGIKYLYK 273
           C+TAFGYYAQATAAQEIFGHTL+SLRGIKYLYK
Sbjct: 440 CATAFGYYAQATAAQEIFGHTLQSLRGIKYLYK 472

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	273
TAIR|locus:2179197	509	AT5G01460 [Arabidopsis thalian	1.0	0.536	0.871	5.5e-125
TAIR|locus:2097618	509	AT3G08930 [Arabidopsis thalian	1.0	0.536	0.868	1.1e-124
DICTYBASE|DDB_G0283707	507	DDB_G0283707 "LMBR1-like conse	0.959	0.516	0.343	4.6e-41
DICTYBASE|DDB_G0293610	507	DDB_G0293610 "LMBR1-like conse	0.959	0.516	0.335	1.6e-40

TAIR|locus:2179197 AT5G01460 [Arabidopsis thaliana (taxid:3702)]

 Score = 1228 (437.3 bits), Expect = 5.5e-125, P = 5.5e-125
 Identities = 238/273 (87%), Positives = 253/273 (92%)

Query:     1 MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
             MRTTFPEYVVALATIVGSVLF+IFGGVGIACLPLGLI +FIRRPKAVITRSQYIKEATEL
Sbjct:   200 MRTTFPEYVVALATIVGSVLFTIFGGVGIACLPLGLITAFIRRPKAVITRSQYIKEATEL 259

Query:    61 GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
             GKKAR+LKKAAD LHQEERSG+KGRKWRKNVK+VEKELLQLEEDV LLEEMYPQGE+AET
Sbjct:   260 GKKARDLKKAADALHQEERSGAKGRKWRKNVKAVEKELLQLEEDVNLLEEMYPQGEQAET 319

Query:   121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
             +WA TVLGYLAK VLGILG IVSVAW+AHI+IYLL++PPL PFLNEVFIKLDD+WGLLGT
Sbjct:   320 AWAFTVLGYLAKFVLGILGLIVSVAWIAHIIIYLLVDPPLSPFLNEVFIKLDDVWGLLGT 379

Query:   181 XXXXXXXXXXXXXVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 240
                          VIAGAMMLGL+LVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF
Sbjct:   380 AAFAFFCFYLLLAVIAGAMMLGLKLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 439

Query:   241 CSTAFGYYAQATAAQEIFGHTLESLRGIKYLYK 273
             C+TAFGYYAQATAAQEIFGHTL+SLRGIKYLYK
Sbjct:   440 CATAFGYYAQATAAQEIFGHTLQSLRGIKYLYK 472

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2097618 AT3G08930 [Arabidopsis thaliana (taxid:3702)]

 Score = 1225 (436.3 bits), Expect = 1.1e-124, P = 1.1e-124
 Identities = 237/273 (86%), Positives = 253/273 (92%)

Query:     1 MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
             MRTTFPEYVVALATIVGSVLF+IFGGVGIACLPLGLI +FIRRPKAVITRSQYIKEATEL
Sbjct:   200 MRTTFPEYVVALATIVGSVLFTIFGGVGIACLPLGLITAFIRRPKAVITRSQYIKEATEL 259

Query:    61 GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
             GKKARELKKAAD LHQEERSG+KGRKWRKNVK+VEKELLQLEEDV LLEEMYPQGE+AET
Sbjct:   260 GKKARELKKAADGLHQEERSGAKGRKWRKNVKAVEKELLQLEEDVNLLEEMYPQGEQAET 319

Query:   121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
             +WA TVLGYLAK +LGI+G IVS+AWVAHI+IYLL++PPL PFLNEVFIKLDD+WGLLGT
Sbjct:   320 AWAFTVLGYLAKFILGIVGLIVSIAWVAHIIIYLLVDPPLSPFLNEVFIKLDDVWGLLGT 379

Query:   181 XXXXXXXXXXXXXVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 240
                          VIAGAMMLGL+LVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF
Sbjct:   380 AAFAFFCFYLLLAVIAGAMMLGLKLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQF 439

Query:   241 CSTAFGYYAQATAAQEIFGHTLESLRGIKYLYK 273
             C+TAFGYYAQATAAQEIFGHTL+SLRGIKYLYK
Sbjct:   440 CATAFGYYAQATAAQEIFGHTLQSLRGIKYLYK 472

GO:0005576 "extracellular region" evidence=ISM

GO:0009506 "plasmodesma" evidence=IDA

GO:0007033 "vacuole organization" evidence=RCA

DICTYBASE|DDB_G0283707 DDB_G0283707 "LMBR1-like conserved region-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 94/274 (34%), Positives = 148/274 (54%)

Query:     2 RTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELG 61
             R +   +++ +    G +LF IFGG+G+  LP  +I  F  RP+  I   +Y++   ++G
Sbjct:   212 RVSIALFIITMVAFFGWLLFIIFGGIGLVALPFDMIGDFKNRPQR-IPYDKYLERKKKIG 270

Query:    62 KKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYP-QGEKAET 120
             ++A EL +   T+      G   ++ RKN     + +  LEED + L+  Y  QG K   
Sbjct:   271 ERATELVEIGKTIQSRTSGGIMSKRDRKNYNRFRQAIFLLEEDYERLKISYKRQGGK--- 327

Query:   121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINP-PLHPFLNEVFIKLDDLWGLLG 179
                  V+ Y A+   G +   VS+ W+ HI+IY++  P P HPFLN + I L++ WG LG
Sbjct:   328 -----VIFYYAQFFGGFVALGVSLGWLLHIIIYMITAPEPFHPFLNSLVIALNNAWGFLG 382

Query:   180 TXXXXXXXXXXXXXVIAGAMMLGLRLVFI-TIHPMKWGATLMNSFLFNVGLILLCSISVI 238
                           V+ G    GLRL F+  IHPM+ G T+MN+FLFNVGLIL+ S+S+ 
Sbjct:   383 VIVYGLLSFYLLFCVVKGNFKFGLRLFFLFPIHPMRVGNTMMNAFLFNVGLILITSVSIT 442

Query:   239 QFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLY 272
              FC+ AF  +   TA   +F   +++L+ +K+ +
Sbjct:   443 HFCTMAFSQFTSTTAINSLFETAVKNLKILKWFW 476

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

DICTYBASE|DDB_G0293610 DDB_G0293610 "LMBR1-like conserved region-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 92/274 (33%), Positives = 147/274 (53%)

Query:     2 RTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELG 61
             R +   +++ +    G +LF IFGG+G+  LP  +I  F  RP+  I   +Y++   ++G
Sbjct:   212 RVSIALFIITMVAFFGWLLFIIFGGIGLVALPFDMITDFKNRPQR-IPYDKYLERKKKIG 270

Query:    62 KKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYP-QGEKAET 120
             ++A EL     T+      G   ++ R+N     + +  LEED + L+  Y  QG K   
Sbjct:   271 ERATELVDVGKTIQSRTTGGIMSKRDRRNYNRFRQAIFLLEEDYERLKISYKRQGGK--- 327

Query:   121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINP-PLHPFLNEVFIKLDDLWGLLG 179
                  V+ Y A+   G +   VS+ W+ HI+IY++  P P HPFLN + I L++ WG LG
Sbjct:   328 -----VILYYAQFFGGFIALGVSLGWLLHIIIYMITAPEPFHPFLNSLVISLNNAWGFLG 382

Query:   180 TXXXXXXXXXXXXXVIAGAMMLGLRLVFI-TIHPMKWGATLMNSFLFNVGLILLCSISVI 238
                           V+ G    GLRL F+  IHPM+ G T+MN+FLFNVGLIL+ S+S+ 
Sbjct:   383 VIVYGLLSFYLLFCVVKGNFKFGLRLFFLFPIHPMRVGNTMMNAFLFNVGLILITSVSIT 442

Query:   239 QFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLY 272
              FC+ AF  +   T+   +F   +++L+ +K+ +
Sbjct:   443 HFCTMAFSQFTSTTSINSLFETAVKNLKILKWFW 476


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.141   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      273       260   0.00089  114 3  11 22  0.40    33
                                                     32  0.49    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  617 (66 KB)
  Total size of DFA:  186 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.57u 0.21s 25.78t   Elapsed:  00:00:01
  Total cpu time:  25.57u 0.21s 25.78t   Elapsed:  00:00:01
  Start:  Sat May 11 09:04:19 2013   End:  Sat May 11 09:04:20 2013

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M028	LMBD2_ARATH	No assigned EC number	0.9194	1.0	0.5363	yes	no
Q9SR93	LMBD1_ARATH	No assigned EC number	0.9157	1.0	0.5363	yes	no
Q658I5	LMBD1_ORYSJ	No assigned EC number	0.8498	1.0	0.5352	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	273
pfam04791	419	pfam04791, LMBR1, LMBR1-like membrane protein	7e-47
COG1340	294	COG1340, COG1340, Uncharacterized archaeal coiled-	0.001

>gnl|CDD|218267 pfam04791, LMBR1, LMBR1-like membrane protein

 Score =  161 bits (409), Expect = 7e-47
 Identities = 59/301 (19%), Positives = 89/301 (29%), Gaps = 78/301 (25%)

Query: 1   MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIR------------------ 42
           +   F  YV + ++  G +L  I  G G+  LP  L    +R                  
Sbjct: 153 LWENFLPYVYSCSSFWGLLLLLILTGYGLVRLPSSLWKLLVRYFRAAKLEREKVEAESKV 212

Query: 43  ----------RPKAVITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVK 92
                              Q  K ATELGK  REL  +A                     
Sbjct: 213 DDILESVSLLPRLLEDVNEQRSKSATELGKLTRELNLSAICRSL---------------- 256

Query: 93  SVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVI 152
                                           T+L      +LG++   +S+  V   + 
Sbjct: 257 -------------------------VYPLAMYTLLVLTFCSILGVVTNTLSLLVVESELP 291

Query: 153 YLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHP 212
           +   +     FLN + I     +GL G A      FYL+ +   G   L     F+  + 
Sbjct: 292 FFTRD-----FLNVIGIASFSKFGLFGAAVEFLLIFYLMYSSYVGFYSLP----FLRYYR 342

Query: 213 MKWGATLMNSFLFNVGLILLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLY 272
            K   T M   + N G +L  S   +        ++    +  EIFG  L SL  +   Y
Sbjct: 343 PKPHDTTMTQSIINSGSLLCRSALPVCSNFLGLTHFDLLGSFGEIFGLDLISLIWLGNFY 402

Query: 273 K 273
            
Sbjct: 403 Y 403

Members of this family are integral membrane proteins that are around 500 residues in length. LMBR1 is not involved in preaxial polydactyly, as originally thought. Vertebrate members of this family may play a role in limb development. A member of this family has been shown to be a lipocalin membrane receptor. Length = 419

>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein [Function unknown]

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 51  SQYIKEATELGKKARELKKAADTLHQE-ERSGSKGRKWRKNVKSVEKELLQLEEDVKLLE 109
            +Y +E  +L ++A EL+K AD LH+E      K  +  +  ++++ EL +LE+ +K L 
Sbjct: 189 QEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALR 248

Query: 110 EMYPQGEKAE 119
                 ++ E
Sbjct: 249 AKEKAAKRRE 258

Length = 294

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	273
PF04791	471	LMBR1: LMBR1-like membrane protein; InterPro: IPR0	99.96
KOG2296	673	consensus Integral membrane protein [General funct	97.99
KOG3722	538	consensus Lipocalin-interacting membrane receptor	97.58
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	95.13
COG1422	201	Predicted membrane protein [Function unknown]	93.89
PF04420	161	CHD5: CHD5-like protein; InterPro: IPR007514 Membe	92.78
PF00664	275	ABC_membrane: ABC transporter transmembrane region	88.54
PF05529	192	Bap31: B-cell receptor-associated protein 31-like	88.24
KOG3088	313	consensus Secretory carrier membrane protein [Intr	87.4
PF12537	72	DUF3735: Protein of unknown function (DUF3735); In	86.32
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	85.64
PF01277	118	Oleosin: Oleosin; InterPro: IPR000136 Oleosins []	83.62
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	83.31
KOG1962	216	consensus B-cell receptor-associated protein and r	82.5
PRK10884	206	SH3 domain-containing protein; Provisional	82.23
PF03904	230	DUF334: Domain of unknown function (DUF334); Inter	81.67
PRK10884	206	SH3 domain-containing protein; Provisional	81.22
PF01956	168	DUF106: Integral membrane protein DUF106; InterPro	80.76

>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor

Probab=99.96  E-value=6.1e-29  Score=242.38  Aligned_cols=259  Identities=25%  Similarity=0.378  Sum_probs=184.3

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhcccCCCcccChHHHHHHHHHHHHHHHHHHHH------------
Q 024062            3 TTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKA------------   70 (273)
Q Consensus         3 vsf~~f~i~~l~~iG~~lfv~y~gvGlaalPi~LI~~f~~Rpk~~is~~~~~~~~~~i~~~~~~l~e~------------   70 (273)
                      .++..|++|+..+.||+++++|+|+||+++|.++++.+.+..+..-..++..+.+.++++..+++.+.            
T Consensus       155 ~~~~~~~ial~~~~Gl~l~i~~~g~Glv~iP~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  234 (471)
T PF04791_consen  155 SSLLPFLIALSNFWGLFLFIILLGYGLVAIPRDLWRSSNSYFRAAKLEDEAAEAKEKLDDIIEKLRRLRRILRDVEELRS  234 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhccccchhhhhcchhHHHHHHHHHHHHHHHHHHhhhcccHHHHH
Confidence            46789999999999999999999999999999999999871111011111122222222222222211            


Q ss_pred             ---------HHHHHhh-------hccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHhcccCccc------------cchh
Q 024062           71 ---------ADTLHQE-------ERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKA------------ETSW  122 (273)
Q Consensus        71 ---------~~~l~~~-------~~~~~~~~k~rr~~~~l~~~~~~Le~~~~~le~~y~~~~~~------------~~~~  122 (273)
                               .+++++.       .++.+.++++++..+..++.+..++++.+.+++.+++.++.            ...|
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  314 (471)
T PF04791_consen  235 ELDTILNELPKEIQELIESSNQEERSTNLGRSWRKILDSENKLLLLLKRDLKSLQRLYRREEQWKTLVLSRFFRNLRFQW  314 (471)
T ss_pred             HHHHHHHhhHHHHHHHHhccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccchHH
Confidence                     1111110       00011122222222333333333333333333332221111            1134


Q ss_pred             hh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062          123 AL-TVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMML  201 (273)
Q Consensus       123 ~~-~~l~~~~kLl~Gii~lllSi~w~i~iil~~i~k~~~~~fLN~~fi~l~~~fpll~~i~~~~~~~Yll~cs~~G~~~~  201 (273)
                      .| ..+.++++.++|+++.++|++|+.|-+.....+     +++.+++..++.++.++.++.+++++|+.+||.+|+.++
T Consensus       315 ~~~~~l~~~~~~il~Vi~~ilSlli~~sEl~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~l~Ym~~ct~~glf~~  389 (471)
T PF04791_consen  315 IWYCYLRPYVYKILAVIFAILSLLIVWSELTFFFRS-----FLFSIFISSDSKFGFLGQLLSFLFLFYMCFCTYYGLFKL  389 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHhHHhhh
Confidence            45 456677999999999999999999999777655     899999999999998999999999999999999999999


Q ss_pred             hhHhhheeeeecccCCChhhhHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhhHHHHHHHhhhccccccccc
Q 024062          202 GLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLY  272 (273)
Q Consensus       202 GiR~~~~~i~pmr~~~T~~nslLfn~~Llll~s~av~qf~~~aF~~Ya~~t~i~~~f~~~v~~l~~~~~~~  272 (273)
                      |+    ++.|+|+||+|++++.|+|+++++..+.+..+|+..+|..|+..|+.+++  .+++++.|.|+++
T Consensus       390 ~~----f~~y~l~p~~ts~~~sL~f~a~~l~Rl~~PL~fNfl~~~~~~~~~~~~~~--~~~~~~~~~~~~~  454 (471)
T PF04791_consen  390 KI----FRFYPLVPHHTSDNSSLFFSAIYLCRLAPPLCFNFLGMIRYDSTTSFNNI--VQIQSLLGLGFFY  454 (471)
T ss_pred             hh----heeccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc--cccccceecchHH
Confidence            97    99999999999999999999999999999999999999999999999988  6677999888854

LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].

>KOG2296 consensus Integral membrane protein [General function prediction only]

Probab=97.99  E-value=0.00097  Score=67.66  Aligned_cols=226  Identities=17%  Similarity=0.155  Sum_probs=142.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHhh--cccCCCc-ccChHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cc-
Q 024062            7 EYVVALATIVGSVLFSIFGGVGIACLPLGLIFS--FIRRPKA-VITRSQYIKEATELGKKARELKKAADTLHQEE--RS-   80 (273)
Q Consensus         7 ~f~i~~l~~iG~~lfv~y~gvGlaalPi~LI~~--f~~Rpk~-~is~~~~~~~~~~i~~~~~~l~e~~~~l~~~~--~~-   80 (273)
                      .++++..-++|-++-++--|.||+-+|-++=+-  .-+|-|+ --..+.++.++++.+++++...++.+.+.+..  +. 
T Consensus       169 e~~~s~SntwGL~~~i~LLG~gLvevP~slW~~~~~~~~~kk~y~~~akia~~~a~aee~~~~i~~~~qa~~~~~~~~~~  248 (673)
T KOG2296|consen  169 EIVMSASNTWGLFLLIFLLGFGLVEVPRSLWKNADWTTRLKKLYFKIAKIAVEKAEAEEEVSDIYVKLQALSTSMSNRDP  248 (673)
T ss_pred             HHHHHHhHHHHHHHHHHHHhhhHhhccHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Confidence            356677777788888888999999999999873  1122111 01123445566666666666665555554311  10 


Q ss_pred             -------------------------CC-c------ChHhHHH--------------HHHHHHHHHHHHHHHHHH---HHh
Q 024062           81 -------------------------GS-K------GRKWRKN--------------VKSVEKELLQLEEDVKLL---EEM  111 (273)
Q Consensus        81 -------------------------~~-~------~~k~rr~--------------~~~l~~~~~~Le~~~~~l---e~~  111 (273)
                                               |. +      +.++.++              +++.+.+......+...+   ..+
T Consensus       249 ~r~~~~~il~~~~~~~~~~~~~~~~~~~~a~~~~s~~~~e~~~~~l~~~~i~a~qt~~~~~a~w~~~V~~~l~le~~~~~  328 (673)
T KOG2296|consen  249 MRPYMNTILAKLAKMFREDPFFKPQGTDLAENDMSSPTSEKSLATLHKHLINALQTLYRYKAEWLVYVTEALVLEDTAKN  328 (673)
T ss_pred             cccchHHHHHhhHhhhCCcccccccccCCccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                                     00 0      1111111              111122222222222222   222


Q ss_pred             cccCccc-------c-------chhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHhhhhhh
Q 024062          112 YPQGEKA-------E-------TSWAL-TVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWG  176 (273)
Q Consensus       112 y~~~~~~-------~-------~~~~~-~~l~~~~kLl~Gii~lllSi~w~i~iil~~i~k~~~~~fLN~~fi~l~~~fp  176 (273)
                      ++.+.++       .       ..|.| ..+..+++.+++++-.+.|.+++++=.-....++.+.++.+-+....++..=
T Consensus       329 ~~Sas~~~~~~~~r~~~~~~~~~~~~Wy~~l~~~f~~~~~i~~~~Ms~~Vl~sE~tf~~~~~~Lsl~a~vi~~~~~~~~~  408 (673)
T KOG2296|consen  329 YRSASGRKYLESSRATKCLLDSVEFMWYCILKKPFQMVLAIVMAIMSAAILLSEATFLLSKYDLSLFAIVISSAKSDELT  408 (673)
T ss_pred             hccccCceeecccccccccCcchhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhheeeeccchHHHHHHHHHhcchhH
Confidence            2222221       0       12334 3556789999999999999988888876777787788888888888876543


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHhhheeeeecccC-CChhhhHHHHHHHHHHHHHHHH
Q 024062          177 LLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWG-ATLMNSFLFNVGLILLCSISVI  238 (273)
Q Consensus       177 ll~~i~~~~~~~Yll~cs~~G~~~~GiR~~~~~i~pmr~~-~T~~nslLfn~~Llll~s~av~  238 (273)
                        -++.-.++..|+..|+.+-.++++++    ..|-+-|+ +|--+|+||-+.++.=.+++++
T Consensus       409 --i~~~af~~l~Y~~~ctY~sl~r~~~~----~yY~L~P~~qTn~~SLlfs~~llCRLTPPiC  465 (673)
T KOG2296|consen  409 --VQFVAFVPLVYMCYCTYYSLFRIQFL----MYYSLTPRRQTNEVSLLFSASLLCRLTPPIC  465 (673)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHH----HhheeccccccchHHHHHHHHHHHhcCchhh
Confidence              35556677889999999999999987    78888888 9999999999998876665554

>KOG3722 consensus Lipocalin-interacting membrane receptor (LIMR) [Defense mechanisms]

Probab=97.58  E-value=0.00062  Score=66.41  Aligned_cols=217  Identities=21%  Similarity=0.309  Sum_probs=128.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhcccCCCcccCh-HH-HHH---HHHHHHHHHHHHHHHHHHHHhhhccCC
Q 024062            8 YVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITR-SQ-YIK---EATELGKKARELKKAADTLHQEERSGS   82 (273)
Q Consensus         8 f~i~~l~~iG~~lfv~y~gvGlaalPi~LI~~f~~Rpk~~is~-~~-~~~---~~~~i~~~~~~l~e~~~~l~~~~~~~~   82 (273)
                      |+-.|.+++|..+..+.|-+|++-+ .+.-..+.-||+. .++ .| ...   +....+++...-.+.+--+-...+.|.
T Consensus       198 ~lYSCvSflg~~lllicTp~g~~rm-f~v~~~~lvkp~~-l~d~~e~~~~~~~ee~s~~r~l~~~~~~~~~i~ds~~~~~  275 (538)
T KOG3722|consen  198 YLYSCVSFLGVLLLLICTPYGFARM-FSVAGQLLVKPKL-LEDLTEQVYASGIEEASLERRLLNTDDEEMGINDSGDDGD  275 (538)
T ss_pred             HHHHHHHHHHHHHHHhcChhhHHHH-HHHhhhheechhH-HHHHHHhhhhhhcchHHHHHHHhcccchhcccccccccCC
Confidence            6778999999999999998888755 3444555556764 211 11 000   111111111110011111111111111


Q ss_pred             c-------C----------hHhHH----------HHHHHHHHHHHHHHHHHHHHHhcccCccccchhhh-hHHHHHHHHH
Q 024062           83 K-------G----------RKWRK----------NVKSVEKELLQLEEDVKLLEEMYPQGEKAETSWAL-TVLGYLAKLV  134 (273)
Q Consensus        83 ~-------~----------~k~rr----------~~~~l~~~~~~Le~~~~~le~~y~~~~~~~~~~~~-~~l~~~~kLl  134 (273)
                      .       +          +|+.+          .++.+++++++++.+-..+++.  +...     .| .-+.+|...+
T Consensus       276 l~n~~~l~~~~~~~~~pl~~~~~~~l~~~k~~~~d~~~l~~~~~e~~~qr~~l~~r--rt~S-----a~eRnlvyP~am~  348 (538)
T KOG3722|consen  276 LGNSTPLKNKKKRRTTPIVRKWDKDVPKKKNPNFDYRELKEYVKELRTQRSSLEKR--RTAS-----AWERNLVYPLAML  348 (538)
T ss_pred             cccccccccccccCCChhHHHHhhhhhhhhcccccHHHHHHHHHHHHHHHHHHHhh--hhhH-----HHHHhhhhHHHHH
Confidence            0       1          11111          3445556666665555555553  1111     12 4667888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCCchHH---HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhheeee
Q 024062          135 LGILGFIVSVAWVAHIVIYLLINPPLHPFLNE---VFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIH  211 (273)
Q Consensus       135 ~Gii~lllSi~w~i~iil~~i~k~~~~~fLN~---~fi~l~~~fpll~~i~~~~~~~Yll~cs~~G~~~~GiR~~~~~i~  211 (273)
                      +=.++.-+|++.++.-++..+.+...-|---+   +=+..=+-|.++|..+=.++++|++.+|++|--..    .+++=.
T Consensus       349 lLLv~T~~SvLlVa~NtL~LLi~e~AlP~~trg~~ig~~Sls~fG~fGA~lEv~LIfYlmvtSvVGfYSl----pffr~~  424 (538)
T KOG3722|consen  349 LLLVLTTCSVLLVATNTLELLIGERALPVYTQGFAIGVHSLSKFGLFGACIEVLLIFYLMVTSVVGFYSL----PFFRSL  424 (538)
T ss_pred             HHHHHhhhHHHHHHHhHHHHHhCcccCccccccccccceehhhccchHHHHHHHHHHHHHHHHHhhhhcc----hhhhcc
Confidence            88999999999999999888877432222211   11222245777999999999999999999997654    356444


Q ss_pred             ecccCCChhhhHHHHHHHHHHHHHHH
Q 024062          212 PMKWGATLMNSFLFNVGLILLCSISV  237 (273)
Q Consensus       212 pmr~~~T~~nslLfn~~Llll~s~av  237 (273)
                      .=|+++|.|--..-||+.++..|.|+
T Consensus       425 ~Pkr~dTtM~qIIgNcv~iLVlSSAL  450 (538)
T KOG3722|consen  425 RPKRDDTTMPQIIGNCVSILVLSSAL  450 (538)
T ss_pred             CcCccCCccchHhhhceeeeeecccc
Confidence            55777888888999999988877554

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=95.13  E-value=0.3  Score=42.32  Aligned_cols=20  Identities=35%  Similarity=0.705  Sum_probs=13.3

Q ss_pred             hhhhhhhHHHHhhcccCCCc
Q 024062           27 VGIACLPLGLIFSFIRRPKA   46 (273)
Q Consensus        27 vGlaalPi~LI~~f~~Rpk~   46 (273)
                      +|++.++.++..=...+|.+
T Consensus        48 lg~vL~~~g~~~~~~~~~~~   67 (191)
T PF04156_consen   48 LGVVLLSLGLLCLLSKRPVQ   67 (191)
T ss_pred             HHHHHHHHHHHHHHHccccc
Confidence            45666777776666676655

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>COG1422 Predicted membrane protein [Function unknown]

Probab=93.89  E-value=4.6  Score=36.25  Aligned_cols=27  Identities=19%  Similarity=0.296  Sum_probs=22.7

Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062           85 RKWRKNVKSVEKELLQLEEDVKLLEEM  111 (273)
Q Consensus        85 ~k~rr~~~~l~~~~~~Le~~~~~le~~  111 (273)
                      ++|-.++++++++..+.-+|++++-..
T Consensus        94 ~~d~~~lkkLq~~qmem~~~Q~elmk~  120 (201)
T COG1422          94 SGDMKKLKKLQEKQMEMMDDQRELMKM  120 (201)
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456779999999999999999888775

>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein

Probab=92.78  E-value=0.33  Score=41.73  Aligned_cols=74  Identities=12%  Similarity=0.150  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-CchHHHH
Q 024062           90 NVKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLH-PFLNEVF  168 (273)
Q Consensus        90 ~~~~l~~~~~~Le~~~~~le~~y~~~~~~~~~~~~~~l~~~~kLl~Gii~lllSi~w~i~iil~~i~k~~~~-~fLN~~f  168 (273)
                      +.-+++|+...+++|.+.++++.......-    -..+.....++.+....++ ..|.=.--++.+++. .+ .|+++++
T Consensus        67 kwaKl~Rk~~kl~~el~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l-~~~~rk~pV~~lp~~-~~p~p~~~lL  140 (161)
T PF04420_consen   67 KWAKLNRKLDKLEEELEKLNKSLSSEKSSF----DKSLSKVLWVLTTLPFFVL-RFWYRKTPVFYLPKG-WFPWPFEWLL  140 (161)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCHHH----HHHHHHH---------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhh-heeecCceEEEECch-hhHHHHHHhe
Confidence            444556666666666666666533333210    0233333333333333333 334344445555542 33 5666665


Q ss_pred             H
Q 024062          169 I  169 (273)
Q Consensus       169 i  169 (273)
                      -
T Consensus       141 S  141 (161)
T PF04420_consen  141 S  141 (161)
T ss_dssp             -
T ss_pred             e
Confidence            4

The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.

>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=88.54  E-value=14  Score=31.21  Aligned_cols=18  Identities=17%  Similarity=0.336  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 024062            8 YVVALATIVGSVLFSIFG   25 (273)
Q Consensus         8 f~i~~l~~iG~~lfv~y~   25 (273)
                      .+..+..+++.+.+.++.
T Consensus       122 ~~~~~~~~i~~~~~~~~~  139 (275)
T PF00664_consen  122 IISSIISIIFSLILLFFI  139 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhhhhhhccccc
Confidence            334444445544444443

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.

>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8

Probab=88.24  E-value=5.8  Score=34.55  Aligned_cols=19  Identities=16%  Similarity=0.308  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 024062            6 PEYVVALATIVGSVLFSIF   24 (273)
Q Consensus         6 ~~f~i~~l~~iG~~lfv~y   24 (273)
                      +.|+.|+..++++++.-++
T Consensus       103 N~YIsGf~LfL~l~I~r~~  121 (192)
T PF05529_consen  103 NMYISGFALFLSLVIRRVH  121 (192)
T ss_pred             hHHHHHHHHHHHHHHHHHH
Confidence            3688888888888877665

Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane

>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.40  E-value=27  Score=33.22  Aligned_cols=20  Identities=10%  Similarity=0.250  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 024062           92 KSVEKELLQLEEDVKLLEEM  111 (273)
Q Consensus        92 ~~l~~~~~~Le~~~~~le~~  111 (273)
                      ++|+|++.+|+||+|.++..
T Consensus        74 eEL~Rke~ELdRREr~~a~~   93 (313)
T KOG3088|consen   74 EELRRKEQELDRRERALARA   93 (313)
T ss_pred             HHHHHHHHHHhHHHHHHhhc
Confidence            34555667777777777774

>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance

Probab=86.32  E-value=5  Score=29.94  Aligned_cols=58  Identities=22%  Similarity=0.356  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhcccCCCcccC-hHHHHHHHHHHHHHHHHHHHH
Q 024062            9 VVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVIT-RSQYIKEATELGKKARELKKA   70 (273)
Q Consensus         9 ~i~~l~~iG~~lfv~y~gvGlaalPi~LI~~f~~Rpk~~is-~~~~~~~~~~i~~~~~~l~e~   70 (273)
                      ++.=++.+|..+..+-.|+|=+..|..-+.-|.+ |   .+ ..+.....+.+..-.+.+.++
T Consensus         9 ~l~ri~ViGVt~mAiLSG~gaVstpy~~~~~~~~-~---v~~~~~i~~~~~~l~~t~~~l~~K   67 (72)
T PF12537_consen    9 VLSRIGVIGVTLMAILSGFGAVSTPYYYFSYFRR-P---VSRESDINNAERRLWHTRDMLVEK   67 (72)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHccHHHHHHHHHh-c---CChHHHHHHHHHHHHHHHHHHHHH
Confidence            5667889999999999999999999999996655 3   44 444444333343333333333

It belongs to the Golgi pH regulator (1.A.38 from TC) family

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=85.64  E-value=14  Score=28.12  Aligned_cols=25  Identities=12%  Similarity=0.154  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062           52 QYIKEATELGKKARELKKAADTLHQ   76 (273)
Q Consensus        52 ~~~~~~~~i~~~~~~l~e~~~~l~~   76 (273)
                      |..+.+....+-.++++|+|+.|+.
T Consensus        11 ~v~~v~~im~~Ni~~ll~Rge~L~~   35 (89)
T PF00957_consen   11 QVEEVKNIMRENIDKLLERGEKLEE   35 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCchHHH
Confidence            4455566666666666666666664

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

>PF01277 Oleosin: Oleosin; InterPro: IPR000136 Oleosins [] are the proteinaceous components of plants' lipid storage bodies called oil bodies

Probab=83.62  E-value=9.3  Score=31.59  Aligned_cols=59  Identities=15%  Similarity=0.230  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHhhhhhhhhh-HHHHhhcccCCCcccChHHHHHHHHHHHHHHHHHHHHHHHH
Q 024062           15 IVGSVLFSIFGGVGIACLP-LGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTL   74 (273)
Q Consensus        15 ~iG~~lfv~y~gvGlaalP-i~LI~~f~~Rpk~~is~~~~~~~~~~i~~~~~~l~e~~~~l   74 (273)
                      .+-.--|..-|+.|++++- +.++..+.++.+| -..+|..+.|.++.+.++++.|+.|+.
T Consensus        55 ~l~~~Gfl~sg~~g~~~ls~lsW~~~y~rg~~~-~~~~q~d~Ak~ri~d~a~~v~~kake~  114 (118)
T PF01277_consen   55 GLAVAGFLTSGAFGLTALSSLSWMYNYFRGRHP-PGPDQLDYAKRRIADTASYVGQKAKEV  114 (118)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCC-CCCccHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333345556666666554 4777788877777 778888888889998888888887765

Oil bodies are small droplets (0.2 to 1.5 mu-m in diameter) containing mostly triacylglycerol that are surrounded by a phospholipid/ oleosin annulus. Oleosins may have a structural role in stabilising the lipid body during dessication of the seed, by preventing coalescence of the oil. They may also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth. Oleosins are found in the monolayer lipid/ water interface of oil bodies and probably interact with both the lipid and phospholipid moieties. Oleosins are proteins of 16 Kd to 24 Kd and are composed of three domains: an N-terminal hydrophilic region of variable length (from 30 to 60 residues); a central hydrophobic domain of about 70 residues and a C-terminal amphipathic region of variable length (from 60 to 100 residues). The central hydrophobic domain is proposed to be made up of beta-strand structure and to interact with the lipids []. It is the only domain whose sequence is conserved.; GO: 0012511 monolayer-surrounded lipid storage body, 0016021 integral to membrane

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=83.31  E-value=4.3  Score=33.87  Aligned_cols=58  Identities=19%  Similarity=0.224  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccCC-cChHhHHHHHHHHHHHHHHHHHHHHHHH
Q 024062           53 YIKEATELGKKARELKKAADTLHQEERSGS-KGRKWRKNVKSVEKELLQLEEDVKLLEE  110 (273)
Q Consensus        53 ~~~~~~~i~~~~~~l~e~~~~l~~~~~~~~-~~~k~rr~~~~l~~~~~~Le~~~~~le~  110 (273)
                      +..+-..++.+.++..|.+++++++-.+-+ .-..-+.+++.+++.|+.||.+...+|+
T Consensus        66 LsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~  124 (126)
T PF07889_consen   66 LSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEE  124 (126)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            344444455556666666666665443222 1234556888888888888888877775

The region featured in this family is approximately 100 amino acids long.

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=82.50  E-value=10  Score=34.48  Aligned_cols=102  Identities=13%  Similarity=0.105  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhHHH------HhhcccCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 024062            7 EYVVALATIVGSVLFSIFGGVGIACLPLGL------IFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTLHQEERS   80 (273)
Q Consensus         7 ~f~i~~l~~iG~~lfv~y~gvGlaalPi~L------I~~f~~Rpk~~is~~~~~~~~~~i~~~~~~l~e~~~~l~~~~~~   80 (273)
                      .|+-|+..|++.++=-+++-+.-.+-=-+.      ..+  -+++. -+.+.+.++.+...++.+.+.++-+.-+++-+.
T Consensus       100 ~YisGf~LFL~lvI~R~~~ll~~l~~l~~~~~~~~~~~~--lk~~~-~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~  176 (216)
T KOG1962|consen  100 LYISGFVLFLSLVIRRLHTLLRELATLRANEKAMKENEA--LKKQL-ENSSKLEEENDKLKADLEKLETELEKKQKKLEK  176 (216)
T ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--HHHhh-hcccchhhhHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            378888888888888887777765554442      111  11222 333335555555555555665555555443321


Q ss_pred             CC-cChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024062           81 GS-KGRKWRKNVKSVEKELLQLEEDVKLLEEM  111 (273)
Q Consensus        81 ~~-~~~k~rr~~~~l~~~~~~Le~~~~~le~~  111 (273)
                      .. ...--+++.+.+++|-..|-+|+.++++.
T Consensus       177 ~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~  208 (216)
T KOG1962|consen  177 AQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQ  208 (216)
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            11 11123345556666666666666666665

>PRK10884 SH3 domain-containing protein; Provisional

Probab=82.23  E-value=13  Score=33.50  Aligned_cols=20  Identities=10%  Similarity=0.263  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 024062           90 NVKSVEKELLQLEEDVKLLE  109 (273)
Q Consensus        90 ~~~~l~~~~~~Le~~~~~le  109 (273)
                      +.++++++...+..+.+.++
T Consensus       140 ~n~~L~~~l~~~~~~~~~l~  159 (206)
T PRK10884        140 ENQKLKNQLIVAQKKVDAAN  159 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444433

>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function

Probab=81.67  E-value=13  Score=34.06  Aligned_cols=24  Identities=13%  Similarity=0.231  Sum_probs=12.8

Q ss_pred             CchHHHHHHhhhhhhHHHHHHHHH
Q 024062          162 PFLNEVFIKLDDLWGLLGTAAFAF  185 (273)
Q Consensus       162 ~fLN~~fi~l~~~fpll~~i~~~~  185 (273)
                      .++|...-...+.+..+=|+.|++
T Consensus       185 ~~ia~~ik~se~~~~~lwyi~Y~v  208 (230)
T PF03904_consen  185 KAIASKIKASESFWTYLWYIAYLV  208 (230)
T ss_pred             HHHHHHHhhhHhHHHHHHHHHHhh
Confidence            444555444555666555555554

>PRK10884 SH3 domain-containing protein; Provisional

Probab=81.22  E-value=12  Score=33.66  Aligned_cols=26  Identities=8%  Similarity=0.090  Sum_probs=15.4

Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHH
Q 024062           85 RKWRKNVKSVEKELLQLEEDVKLLEE  110 (273)
Q Consensus        85 ~k~rr~~~~l~~~~~~Le~~~~~le~  110 (273)
                      ++-++++..++.+.+.|+.+.+.++.
T Consensus       142 ~~L~~~l~~~~~~~~~l~~~~~~~~~  167 (206)
T PRK10884        142 QKLKNQLIVAQKKVDAANLQLDDKQR  167 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666666666666666555554

>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function

Probab=80.76  E-value=34  Score=29.05  Aligned_cols=36  Identities=25%  Similarity=0.290  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHH
Q 024062           65 RELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLL  108 (273)
Q Consensus        65 ~~l~e~~~~l~~~~~~~~~~~k~rr~~~~l~~~~~~Le~~~~~l  108 (273)
                      ++..++.+++++++        +..+.++++++...+.+++...
T Consensus        50 ~~~~~~~~~l~~~~--------~~~~~~~l~~~~~~~~~~~~~~   85 (168)
T PF01956_consen   50 KEFQKRYRELRKNG--------DFKKPKKLEKRQMELMEKQQEM   85 (168)
T ss_pred             HHHHHHHHHHHHcC--------CccCHHHHHHHHHHHHHHHHHH
Confidence            34455555555422        2233444555555555554444

Members are predicted to be integral membrane proteins.; GO: 0016020 membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	273
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	3e-05
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 42.8 bits (100), Expect = 3e-05
 Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 55  KEATELGKKARELKKAADTLH-QEERSGSKGRKWRKNVKSVEKELL-QLEEDV 105
            +A     +    +KA   L    +R   +  K + N +  +K    Q + D+
Sbjct: 101 LDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADI 153

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 40.5 bits (94), Expect = 2e-04
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 13/57 (22%)

Query: 70  AADTLHQEERSGSKGRKWRKNVKSVEKELLQLEE-DV---KLLEEMYPQGEKAETSW 122
            AD L QE  S    RKWR      E++  +L+E D     + +E   + +K    W
Sbjct: 76  QADRLTQEPESI---RKWR------EEQRKRLQELDAASKVMEQEWREKAKKDLEEW 123

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 8e-04
 Identities = 44/306 (14%), Positives = 81/306 (26%), Gaps = 102/306 (33%)

Query: 20  LFSIFGGVGIACLP----------LGLIFSFIRRPKAVITRSQYIKEATELGKKARELKK 69
           L   +       LP          L +I   IR   A        K      K    ++ 
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA---TWDNWKH-VNCDKLTTIIES 361

Query: 70  AADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVK----LLEEMYPQGEKAETSWALT 125
           + + L   E             + +   L            LL  ++    K++      
Sbjct: 362 SLNVLEPAE------------YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM---V 406

Query: 126 VLGYLAKLVL---GILGFIVSVAWVAHIVIYLLINPP------LH-PFLNEV-FIKLDDL 174
           V+  L K  L         +S+       IYL +         LH   ++     K  D 
Sbjct: 407 VVNKLHKYSLVEKQPKESTISI----P-SIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461

Query: 175 WGLLGTAAFAFFCFYL---LLAVIAGAMMLGLRLVFITIHPMK---------WGA----- 217
             L+      +F  ++   L  +     M   R+VF+    ++         W A     
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521

Query: 218 -------------------------TLMNSFLFNVGLILLCS--ISVIQFCSTAF----- 245
                                     +++ FL  +   L+CS    +++    A      
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNAILD-FLPKIEENLICSKYTDLLRI---ALMAEDE 577

Query: 246 GYYAQA 251
             + +A
Sbjct: 578 AIFEEA 583

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	273
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	86.58
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	85.22

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=86.58  E-value=1.9  Score=30.43  Aligned_cols=36  Identities=31%  Similarity=0.451  Sum_probs=22.9

Q ss_pred             hHHHHhhcccCCCcccChHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 024062           33 PLGLIFSFIRRPKAVITRSQYIKEATELG---KKARELKKAADTLH   75 (273)
Q Consensus        33 Pi~LI~~f~~Rpk~~is~~~~~~~~~~i~---~~~~~l~e~~~~l~   75 (273)
                      |+|+--+      | |+-.||-|-|+.+.   .|.++|+..-..+.
T Consensus         2 ~~dlsDg------p-it~qeylevK~ALaaSeAkiQQLmkVN~~ls   40 (63)
T 2w6a_A            2 PLGSSDG------A-VTLQEYLELKKALATSEAKVQQLMKVNSSLS   40 (63)
T ss_dssp             CCC--CC------S-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccCC------c-chHHHHHHHHHHHHhhHHHHHHHHHHhHhhh
Confidence            5666655      4 99999988777765   45556665555554

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=85.22  E-value=1.1  Score=30.77  Aligned_cols=44  Identities=14%  Similarity=0.182  Sum_probs=22.7

Q ss_pred             hHHHHhhccc--CCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024062           33 PLGLIFSFIR--RPKAVITRSQYIKEATELGKKARELKKAADTLHQE   77 (273)
Q Consensus        33 Pi~LI~~f~~--Rpk~~is~~~~~~~~~~i~~~~~~l~e~~~~l~~~   77 (273)
                      |+|+|+...+  -|.. .+.+.+..+..++..+.++|.++-++++++
T Consensus         3 AlefIk~~LG~~~p~~-~d~eaLk~E~~eLk~k~~~L~~~~~el~~~   48 (53)
T 2yy0_A            3 ALDFLKHHLGAATPEN-PEIELLRLELAEMKEKYEAIVEENKKLKAK   48 (53)
T ss_dssp             -------------CCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7899999888  7765 555566667777777777777777777653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	273
d2hyda2	323	Putative multidrug export ATP-binding/permease pro	84.78

>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=84.78  E-value=7.8  Score=30.59  Aligned_cols=16  Identities=6%  Similarity=0.289  Sum_probs=7.5

Q ss_pred             hhhhhhhhHHHHhhcc
Q 024062           26 GVGIACLPLGLIFSFI   41 (273)
Q Consensus        26 gvGlaalPi~LI~~f~   41 (273)
                      .+.++..|+-.+-...
T Consensus       165 li~l~~~~~~~~~~~~  180 (323)
T d2hyda2         165 LAALFIFPFYILTVYV  180 (323)
T ss_dssp             HHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            3444455555544433