Citrus Sinensis ID: 024066
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 273 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SUC0 | 347 | Probable 3-hydroxyisobuty | yes | no | 1.0 | 0.786 | 0.765 | 1e-125 | |
| Q99L13 | 335 | 3-hydroxyisobutyrate dehy | yes | no | 0.923 | 0.752 | 0.515 | 6e-68 | |
| Q2HJD7 | 336 | 3-hydroxyisobutyrate dehy | yes | no | 0.923 | 0.75 | 0.515 | 9e-68 | |
| Q5R5E7 | 336 | 3-hydroxyisobutyrate dehy | yes | no | 0.923 | 0.75 | 0.511 | 3e-67 | |
| P31937 | 336 | 3-hydroxyisobutyrate dehy | yes | no | 0.923 | 0.75 | 0.511 | 3e-67 | |
| P29266 | 335 | 3-hydroxyisobutyrate dehy | yes | no | 0.923 | 0.752 | 0.507 | 1e-66 | |
| Q54CX6 | 321 | Probable 3-hydroxyisobuty | yes | no | 0.912 | 0.775 | 0.494 | 8e-60 | |
| Q9V8M5 | 324 | Probable 3-hydroxyisobuty | yes | no | 0.860 | 0.725 | 0.453 | 2e-51 | |
| Q9XTI0 | 299 | Probable 3-hydroxyisobuty | yes | no | 0.849 | 0.775 | 0.443 | 6e-51 | |
| P28811 | 298 | 3-hydroxyisobutyrate dehy | yes | no | 0.934 | 0.855 | 0.4 | 3e-47 |
| >sp|Q9SUC0|3HIDH_ARATH Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=At4g20930 PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 448 bits (1152), Expect = e-125, Method: Compositional matrix adjust.
Identities = 209/273 (76%), Positives = 242/273 (88%)
Query: 1 MFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST 60
MF++MGV ++ETP+EVA+ S+VVITMLPSSSHV+DVY G NGLL G N +RP L IDSST
Sbjct: 75 MFTEMGVSSRETPYEVAQDSEVVITMLPSSSHVMDVYTGTNGLLLGENDIRPALFIDSST 134
Query: 61 IDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQA 120
IDPQT+R IS AVSNC LKEK+D+WE PVMLDAPVSGGVLAAEAGTLTFMVGG EDAY A
Sbjct: 135 IDPQTTRKISLAVSNCNLKEKRDNWEKPVMLDAPVSGGVLAAEAGTLTFMVGGPEDAYLA 194
Query: 121 AKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 180
A+P+ SMG+ +IYCGG+GNG+AAKICNNL MAVSMLG SEAL LGQSLGISASTLT++L
Sbjct: 195 ARPILQSMGRTSIYCGGSGNGSAAKICNNLAMAVSMLGTSEALALGQSLGISASTLTEVL 254
Query: 181 NSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTS 240
N+SS RCWSSD+YNPVPGVM+GVP+SR+Y GGFASKLMAKDLNLA ASA+EVG PL S
Sbjct: 255 NTSSGRCWSSDAYNPVPGVMKGVPSSRDYNGGFASKLMAKDLNLAAASAEEVGHKSPLIS 314
Query: 241 QAQDIYAKLCENGHDSKDFSCVFQHYYGGKDEV 273
+AQ+IY K+CE GH++KDFSCVF+H+Y GKDEV
Sbjct: 315 KAQEIYKKMCEEGHETKDFSCVFRHFYNGKDEV 347
|
Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 1 |
| >sp|Q99L13|3HIDH_MOUSE 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Mus musculus GN=Hibadh PE=2 SV=1 | Back alignment and function description |
|---|
Score = 257 bits (657), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 136/264 (51%), Positives = 170/264 (64%), Gaps = 12/264 (4%)
Query: 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 61
F + G +P EVAE +D +ITMLPSS + ++VY+G NG+L+ + LLIDSSTI
Sbjct: 77 FKEAGEQVASSPAEVAEKADRIITMLPSSMNAVEVYSGANGILK--KVKKGSLLIDSSTI 134
Query: 62 DPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAA 121
DP S+ ++ V EK + V +DAPVSGGV AA +G LTFMVGG ED + AA
Sbjct: 135 DPSVSKELAKEV------EKMGA----VFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAA 184
Query: 122 KPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 181
+ L MG N +YCG G G +AKICNN+ +A+SM+G +EA+ LG G+ L KILN
Sbjct: 185 QELLECMGSNVVYCGAVGTGQSAKICNNMLLAISMIGTAEAMNLGIRSGLDPKLLAKILN 244
Query: 182 SSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQ 241
SS RCWSSD+YNPVPGVM GVP+S NY GGF + LMAKDL LA SA L S
Sbjct: 245 MSSGRCWSSDTYNPVPGVMHGVPSSNNYQGGFGTTLMAKDLGLAQDSATSTKTPILLGSL 304
Query: 242 AQDIYAKLCENGHDSKDFSCVFQH 265
A IY +C G+ KDFS VFQ+
Sbjct: 305 AHQIYRMMCSKGYSKKDFSSVFQY 328
|
Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|Q2HJD7|3HIDH_BOVIN 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Bos taurus GN=HIBADH PE=2 SV=1 | Back alignment and function description |
|---|
Score = 256 bits (655), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 136/264 (51%), Positives = 171/264 (64%), Gaps = 12/264 (4%)
Query: 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 61
F D G +P +VAE +D +ITMLP+S + ++ Y+G NG+L+ + LLIDSSTI
Sbjct: 78 FLDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILK--KVKKGSLLIDSSTI 135
Query: 62 DPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAA 121
DP S+ ++ V EK + V +DAPVSGGV AA +G LTFMVGG E+ + AA
Sbjct: 136 DPMVSKELAKEV------EKMGA----VFMDAPVSGGVGAARSGNLTFMVGGVEEEFAAA 185
Query: 122 KPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 181
+ L MG N +YCG G G AAKICNNL +A+SM+G +EA+ LG LG+ L KILN
Sbjct: 186 QELLGCMGSNVVYCGAVGTGQAAKICNNLLLAISMIGTAEAMNLGIRLGLDPKLLAKILN 245
Query: 182 SSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQ 241
SS RCWSSD+YNPVPGVM+GVP++ NY GGF + LMAKDL LA SA L SQ
Sbjct: 246 MSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSQ 305
Query: 242 AQDIYAKLCENGHDSKDFSCVFQH 265
A IY +C G+ KDFS VFQ
Sbjct: 306 AHQIYRMMCAKGYSKKDFSSVFQF 329
|
Bos taurus (taxid: 9913) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|Q5R5E7|3HIDH_PONAB 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Pongo abelii GN=HIBADH PE=2 SV=1 | Back alignment and function description |
|---|
Score = 255 bits (651), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 135/264 (51%), Positives = 170/264 (64%), Gaps = 12/264 (4%)
Query: 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 61
F D G +P +VAE +D +ITMLP+S + ++ Y+G NG+L+ + LLIDSSTI
Sbjct: 78 FQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILK--KVKKGSLLIDSSTI 135
Query: 62 DPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAA 121
DP S+ ++ V EK + V +DAPVSGGV AA +G LTFMVGG ED + AA
Sbjct: 136 DPAVSKELAKEV------EKMGA----VFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAA 185
Query: 122 KPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 181
+ L MG N +YCG G G AAKICNN+ +A+SM+G +EA+ LG LG+ L KILN
Sbjct: 186 QELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILN 245
Query: 182 SSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQ 241
SS RCWSSD+YNPVPGVM+GVP++ NY GGF + LMAKDL LA SA L S
Sbjct: 246 MSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGATLMAKDLGLAQDSATSTKSPILLGSL 305
Query: 242 AQDIYAKLCENGHDSKDFSCVFQH 265
A IY +C G+ KDFS VFQ
Sbjct: 306 AHQIYRMMCAKGYSKKDFSSVFQF 329
|
Pongo abelii (taxid: 9601) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|P31937|3HIDH_HUMAN 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Homo sapiens GN=HIBADH PE=1 SV=2 | Back alignment and function description |
|---|
Score = 254 bits (650), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 135/264 (51%), Positives = 170/264 (64%), Gaps = 12/264 (4%)
Query: 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 61
F D G +P +VAE +D +ITMLP+S + ++ Y+G NG+L+ + LLIDSSTI
Sbjct: 78 FQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILK--KVKKGSLLIDSSTI 135
Query: 62 DPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAA 121
DP S+ ++ V EK + V +DAPVSGGV AA +G LTFMVGG ED + AA
Sbjct: 136 DPAVSKELAKEV------EKMGA----VFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAA 185
Query: 122 KPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 181
+ L MG N +YCG G G AAKICNN+ +A+SM+G +EA+ LG LG+ L KILN
Sbjct: 186 QELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILN 245
Query: 182 SSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQ 241
SS RCWSSD+YNPVPGVM+GVP++ NY GGF + LMAKDL LA SA L S
Sbjct: 246 MSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSL 305
Query: 242 AQDIYAKLCENGHDSKDFSCVFQH 265
A IY +C G+ KDFS VFQ
Sbjct: 306 AHQIYRMMCAKGYSKKDFSSVFQF 329
|
Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|P29266|3HIDH_RAT 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Hibadh PE=1 SV=3 | Back alignment and function description |
|---|
Score = 253 bits (646), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 134/264 (50%), Positives = 172/264 (65%), Gaps = 12/264 (4%)
Query: 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 61
F + G +P +VAE +D +ITMLPSS + ++VY+G NG+L+ + LLIDSSTI
Sbjct: 77 FKEAGEQVASSPADVAEKADRIITMLPSSMNSIEVYSGANGILK--KVKKGSLLIDSSTI 134
Query: 62 DPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAA 121
DP S+ ++ V EK + V +DAPVSGGV AA +G LTFMVGG E+ + AA
Sbjct: 135 DPSVSKELAKEV------EKMGA----VFMDAPVSGGVGAARSGNLTFMVGGVENEFAAA 184
Query: 122 KPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 181
+ L MG N +YCG G+G +AKICNN+ +A+SM+G +EA+ LG G+ L KILN
Sbjct: 185 QELLGCMGSNVLYCGAVGSGQSAKICNNMLLAISMIGTAEAMNLGIRSGLDPKLLAKILN 244
Query: 182 SSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQ 241
SS RCWSSD+YNPVPGVM+GVP+S NY GGF + LMAKDL LA SA L S
Sbjct: 245 MSSGRCWSSDTYNPVPGVMDGVPSSNNYQGGFGTTLMAKDLGLAQDSATSTKTPILLGSV 304
Query: 242 AQDIYAKLCENGHDSKDFSCVFQH 265
A IY +C G+ KDFS VFQ+
Sbjct: 305 AHQIYRMMCSKGYSKKDFSSVFQY 328
|
Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|Q54CX6|3HIDH_DICDI Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=hibA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 230 bits (587), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 130/263 (49%), Positives = 167/263 (63%), Gaps = 14/263 (5%)
Query: 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP-QLLIDSST 60
+ G +P EVA+ +DV++TMLP+S+HV +VY G NG+ Q +VRP LL+DSST
Sbjct: 61 LKEKGAKIANSPAEVAKEADVIVTMLPASAHVKNVYCGENGIFQ---TVRPGTLLLDSST 117
Query: 61 IDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQA 120
IDP T+R +++ I K+ + + MLD PVSGG AEAGTLTFMVGGSE +
Sbjct: 118 IDPATAREVAS-----IAKKHQST-----MLDCPVSGGTGGAEAGTLTFMVGGSEQDFNT 167
Query: 121 AKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 180
AK MGKN ++CG G G AK+CNNL + +SM+ VSEA+ LG G+ L I
Sbjct: 168 AKTYLECMGKNIVHCGDVGTGQVAKVCNNLVLGISMIAVSEAMNLGVKQGMDPKKLAGIF 227
Query: 181 NSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTS 240
N+SSARCW+S+ YNP PGV+E PASR Y GGF S LM KDL LA+ SAK +G L +
Sbjct: 228 NTSSARCWTSELYNPCPGVIETSPASRGYTGGFGSALMTKDLGLAVDSAKSIGEPLLLGN 287
Query: 241 QAQDIYAKLCENGHDSKDFSCVF 263
A +Y L G KDFS V+
Sbjct: 288 SAHQLYTLLVAKGDGQKDFSVVY 310
|
Dictyostelium discoideum (taxid: 44689) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|Q9V8M5|3HIDH_DROME Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Drosophila melanogaster GN=CG15093 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 202 bits (515), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 113/249 (45%), Positives = 151/249 (60%), Gaps = 14/249 (5%)
Query: 15 EVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVS 74
E+A+ SD VITMLP+++ V Y+ G N + + IDSSTI P +++
Sbjct: 80 ELAKNSDFVITMLPNNAIVDASYDEMTA--DGVN--KDTIFIDSSTISPDLVKSL----- 130
Query: 75 NCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIY 134
+KK S + +DAPVSGGV AE TLTFMVGG+E Y A K + MGK +
Sbjct: 131 -----QKKISAKGARFIDAPVSGGVPGAEQATLTFMVGGTEAEYNAVKAVLECMGKKITH 185
Query: 135 CGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYN 194
CG G G AAK+CNN+ +A+SM+GVSEA+ L G+ A+ +I+NSS+ RCW+S+ YN
Sbjct: 186 CGVYGMGQAAKLCNNMMLAISMIGVSEAMNLAVRQGLDANVFAEIINSSTGRCWASEIYN 245
Query: 195 PVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGH 254
PVPGV PA+R+Y GGF+S L+ KDL LA A PL S A +Y LC+ G
Sbjct: 246 PVPGVCPSAPANRDYAGGFSSALITKDLGLASGVANASNSPIPLGSLAHKVYQSLCDKGL 305
Query: 255 DSKDFSCVF 263
+KDFS V+
Sbjct: 306 GNKDFSVVY 314
|
Drosophila melanogaster (taxid: 7227) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|Q9XTI0|3HIDH_CAEEL Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=B0250.5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 201 bits (510), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 110/248 (44%), Positives = 154/248 (62%), Gaps = 16/248 (6%)
Query: 20 SDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCIL 78
S +IT+LPSS HV VY G G+ + +++P L +DSSTID S ++ A + +L
Sbjct: 58 SKEIITVLPSSPHVKAVYQGEAGIFK---TIQPGTLCMDSSTIDQIVSLEVAQAAA--LL 112
Query: 79 KEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDA-YQAAKPLFLSMGKNTIYCGG 137
K + +DAP+SGGV A+ TLTFMVG DA ++ A+ + MGKN + G
Sbjct: 113 KAE--------YIDAPISGGVTGAQQATLTFMVGAGNDATFKRAEAVLSLMGKNIVNLGA 164
Query: 138 AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVP 197
GNG AAKICNN+ + + M+ V+E + LG S+G+ A L I+N+SS RCWSSD+YNPVP
Sbjct: 165 VGNGTAAKICNNMLLGIQMVAVAETMNLGISMGLDAKALAGIVNTSSGRCWSSDTYNPVP 224
Query: 198 GVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCEN-GHDS 256
GV+E +P+ R Y GGF + LMAKDL+LA ++ P+ S A IY L + + +
Sbjct: 225 GVIENIPSCRGYAGGFGTTLMAKDLSLAQNASTNTQAPTPMGSLAHQIYRILARDPQYQA 284
Query: 257 KDFSCVFQ 264
KDF V+Q
Sbjct: 285 KDFGVVYQ 292
|
Caenorhabditis elegans (taxid: 6239) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|P28811|MMSB_PSEAE 3-hydroxyisobutyrate dehydrogenase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=mmsB PE=2 SV=1 | Back alignment and function description |
|---|
Score = 189 bits (479), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 108/270 (40%), Positives = 157/270 (58%), Gaps = 15/270 (5%)
Query: 4 DMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDP 63
+ G ++ + E ++VVI+MLP+ HV +Y G +GLL LLID STI P
Sbjct: 42 EQGAQGADSALQCCEGAEVVISMLPAGQHVESLYLGDDGLL--ARVAGKPLLIDCSTIAP 99
Query: 64 QTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKP 123
+T+R ++ A + L +LDAPVSGGV A AGTL+F+VGG + + A+P
Sbjct: 100 ETARKVAEAAAAKGL----------TLLDAPVSGGVGGARAGTLSFIVGGPAEGFARARP 149
Query: 124 LFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS 183
+ +MG+N + G G G AKICNN+ + + M G +EAL LG G+ + L++++ S
Sbjct: 150 VLENMGRNIFHAGDHGAGQVAKICNNMLLGILMAGTAEALALGVKNGLDPAVLSEVMKQS 209
Query: 184 SARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQ 243
S W+ + YNP PGVM PAS Y GGF +LM KDL LALA+A+ V PL + A+
Sbjct: 210 SGGNWALNLYNPWPGVMPQAPASNGYAGGFQVRLMNKDLGLALANAQAVQASTPLGALAR 269
Query: 244 DIYA--KLCENGHDSKDFSCVFQHYYGGKD 271
++++ + H+ DFS + Q Y GKD
Sbjct: 270 NLFSLHAQADAEHEGLDFSSI-QKLYRGKD 298
|
Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 273 | ||||||
| 224061611 | 347 | predicted protein [Populus trichocarpa] | 1.0 | 0.786 | 0.857 | 1e-136 | |
| 225444069 | 345 | PREDICTED: probable 3-hydroxyisobutyrate | 0.996 | 0.788 | 0.801 | 1e-129 | |
| 255564371 | 388 | 3-hydroxyisobutyrate dehydrogenase, puta | 1.0 | 0.703 | 0.805 | 1e-129 | |
| 18415593 | 347 | 3-hydroxyisobutyrate dehydrogenase [Arab | 1.0 | 0.786 | 0.765 | 1e-123 | |
| 21555592 | 347 | 3-hydroxyisobutyrate dehydrogenase-like | 1.0 | 0.786 | 0.765 | 1e-123 | |
| 449435530 | 353 | PREDICTED: probable 3-hydroxyisobutyrate | 0.996 | 0.770 | 0.779 | 1e-122 | |
| 7431189 | 371 | 3-hydroxyisobutyrate dehydrogenase homol | 1.0 | 0.735 | 0.703 | 1e-119 | |
| 297799966 | 372 | hypothetical protein ARALYDRAFT_329506 [ | 1.0 | 0.733 | 0.700 | 1e-118 | |
| 357448533 | 352 | hypothetical protein MTR_2g030400 [Medic | 0.996 | 0.772 | 0.738 | 1e-118 | |
| 356533083 | 343 | PREDICTED: probable 3-hydroxyisobutyrate | 0.996 | 0.793 | 0.753 | 1e-118 |
| >gi|224061611|ref|XP_002300566.1| predicted protein [Populus trichocarpa] gi|222847824|gb|EEE85371.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 234/273 (85%), Positives = 250/273 (91%)
Query: 1 MFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST 60
MFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVY GPNGLL+ N +RPQLLIDSST
Sbjct: 75 MFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYTGPNGLLRCANLMRPQLLIDSST 134
Query: 61 IDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQA 120
IDPQTSR +S AVSNCILKEKKD WE PVMLDAPVSGGVLAAEAGTLTFMVGGSEDAY A
Sbjct: 135 IDPQTSRKVSVAVSNCILKEKKDHWEKPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYLA 194
Query: 121 AKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 180
AKPLFLSMGKN IYCGGAG G+AAKICNNL +AVSMLGVSEA LGQSLGISA TLTK+L
Sbjct: 195 AKPLFLSMGKNAIYCGGAGTGSAAKICNNLALAVSMLGVSEAFVLGQSLGISAGTLTKVL 254
Query: 181 NSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTS 240
N+SSARCWSSDSYNPVPGVMEGVPASRNY GGFASKLMAKDLNLA SAKEVG+ CPLT
Sbjct: 255 NTSSARCWSSDSYNPVPGVMEGVPASRNYAGGFASKLMAKDLNLAATSAKEVGLQCPLTY 314
Query: 241 QAQDIYAKLCENGHDSKDFSCVFQHYYGGKDEV 273
QAQ+IY +LC++GH+SKDFSC F+HYY G+DE+
Sbjct: 315 QAQEIYTELCKDGHESKDFSCAFRHYYSGQDEL 347
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225444069|ref|XP_002264140.1| PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial [Vitis vinifera] gi|297740847|emb|CBI31029.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 218/272 (80%), Positives = 242/272 (88%)
Query: 1 MFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST 60
MF++ GVPTKETPFE+AE SDVVITMLPSSSHVLDVY GPNGL+ GN +RP L IDSST
Sbjct: 73 MFAERGVPTKETPFEIAETSDVVITMLPSSSHVLDVYTGPNGLIHDGNLLRPMLFIDSST 132
Query: 61 IDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQA 120
IDPQTSR +S AVSNC LK++KD WE P++LDAPVSGGVLAAE GTLTFMVGGSE+AY A
Sbjct: 133 IDPQTSRRLSVAVSNCGLKQRKDIWETPIILDAPVSGGVLAAETGTLTFMVGGSEEAYLA 192
Query: 121 AKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 180
AK LFLSMGKNTIYCGGAGNG+AAKICNNL MAVSMLGVSEA LGQSLGI+A TL KI
Sbjct: 193 AKSLFLSMGKNTIYCGGAGNGSAAKICNNLAMAVSMLGVSEAFALGQSLGIAAGTLAKIF 252
Query: 181 NSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTS 240
NSSSARCWSSDSYNPVPGVMEGVP+SRNY GGFA+KLMAKDLNLA SAKE G+ CPLTS
Sbjct: 253 NSSSARCWSSDSYNPVPGVMEGVPSSRNYVGGFATKLMAKDLNLAAESAKETGLTCPLTS 312
Query: 241 QAQDIYAKLCENGHDSKDFSCVFQHYYGGKDE 272
QA++I+ +LC+ GH++KDFSCVF+HYY GKDE
Sbjct: 313 QAKEIFVELCKEGHEAKDFSCVFRHYYSGKDE 344
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255564371|ref|XP_002523182.1| 3-hydroxyisobutyrate dehydrogenase, putative [Ricinus communis] gi|223537589|gb|EEF39213.1| 3-hydroxyisobutyrate dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust.
Identities = 220/273 (80%), Positives = 245/273 (89%)
Query: 1 MFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST 60
MF+DMGV TKETP EVAEAS++VITMLPS+SHVLDVYNGPNGLLQGG +RPQL I+SST
Sbjct: 116 MFTDMGVSTKETPLEVAEASNIVITMLPSTSHVLDVYNGPNGLLQGGTFLRPQLFINSST 175
Query: 61 IDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQA 120
IDP+TSR +SAAVSN ++KEK +WE P+MLDAPVSGGVLAAEAGTLTFMVGGS+DAY A
Sbjct: 176 IDPETSRKLSAAVSNFVVKEKTGNWEKPLMLDAPVSGGVLAAEAGTLTFMVGGSKDAYLA 235
Query: 121 AKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 180
AKPLFLSMGK+TIYCGGAG G+AAKICNNL MAVSMLGVSEAL LGQSLGI A TLTK+
Sbjct: 236 AKPLFLSMGKSTIYCGGAGTGSAAKICNNLAMAVSMLGVSEALALGQSLGIDADTLTKVF 295
Query: 181 NSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTS 240
NSSSARCWSSDSYNPVPGVMEGVPASRNY GGFASKLM KDLNLA ASAK V CPLT
Sbjct: 296 NSSSARCWSSDSYNPVPGVMEGVPASRNYAGGFASKLMTKDLNLAAASAKAVDFTCPLTQ 355
Query: 241 QAQDIYAKLCENGHDSKDFSCVFQHYYGGKDEV 273
QA +IY ++CENGH+++DFSCVF+HYY GKD++
Sbjct: 356 QALEIYTEMCENGHETEDFSCVFRHYYFGKDKL 388
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18415593|ref|NP_567617.1| 3-hydroxyisobutyrate dehydrogenase [Arabidopsis thaliana] gi|30316393|sp|Q9SUC0.3|3HIDH_ARATH RecName: Full=Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial; Short=HIBADH; Flags: Precursor gi|105830240|gb|ABF74718.1| At4g20930 [Arabidopsis thaliana] gi|110737072|dbj|BAF00489.1| 3-hydroxyisobutyrate dehydrogenase -like protein [Arabidopsis thaliana] gi|332658977|gb|AEE84377.1| 3-hydroxyisobutyrate dehydrogenase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 209/273 (76%), Positives = 242/273 (88%)
Query: 1 MFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST 60
MF++MGV ++ETP+EVA+ S+VVITMLPSSSHV+DVY G NGLL G N +RP L IDSST
Sbjct: 75 MFTEMGVSSRETPYEVAQDSEVVITMLPSSSHVMDVYTGTNGLLLGENDIRPALFIDSST 134
Query: 61 IDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQA 120
IDPQT+R IS AVSNC LKEK+D+WE PVMLDAPVSGGVLAAEAGTLTFMVGG EDAY A
Sbjct: 135 IDPQTTRKISLAVSNCNLKEKRDNWEKPVMLDAPVSGGVLAAEAGTLTFMVGGPEDAYLA 194
Query: 121 AKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 180
A+P+ SMG+ +IYCGG+GNG+AAKICNNL MAVSMLG SEAL LGQSLGISASTLT++L
Sbjct: 195 ARPILQSMGRTSIYCGGSGNGSAAKICNNLAMAVSMLGTSEALALGQSLGISASTLTEVL 254
Query: 181 NSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTS 240
N+SS RCWSSD+YNPVPGVM+GVP+SR+Y GGFASKLMAKDLNLA ASA+EVG PL S
Sbjct: 255 NTSSGRCWSSDAYNPVPGVMKGVPSSRDYNGGFASKLMAKDLNLAAASAEEVGHKSPLIS 314
Query: 241 QAQDIYAKLCENGHDSKDFSCVFQHYYGGKDEV 273
+AQ+IY K+CE GH++KDFSCVF+H+Y GKDEV
Sbjct: 315 KAQEIYKKMCEEGHETKDFSCVFRHFYNGKDEV 347
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21555592|gb|AAM63893.1| 3-hydroxyisobutyrate dehydrogenase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 209/273 (76%), Positives = 242/273 (88%)
Query: 1 MFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST 60
MF++MGV ++ETP+EVA+ S+VVITMLPSSSHV+DVY G NGLL G N +RP L IDSST
Sbjct: 75 MFTEMGVSSRETPYEVAQDSEVVITMLPSSSHVMDVYTGTNGLLLGENDIRPALFIDSST 134
Query: 61 IDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQA 120
IDPQT+R IS AVSNC LKEK+D+WE PVMLDAPVSGGVLAAEAGTLTFMVGG EDAY A
Sbjct: 135 IDPQTTRKISLAVSNCNLKEKRDNWEKPVMLDAPVSGGVLAAEAGTLTFMVGGPEDAYLA 194
Query: 121 AKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 180
A+P+ SMG+ +IYCGG+GNG+AAKICNNL MAVSMLG SEAL LGQSLGISASTLT++L
Sbjct: 195 ARPILQSMGRTSIYCGGSGNGSAAKICNNLAMAVSMLGTSEALALGQSLGISASTLTEVL 254
Query: 181 NSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTS 240
N+SS RCWSSD+YNPVPGVM+GVP+SR+Y GGFASKLMAKDLNLA ASA+EVG PL S
Sbjct: 255 NTSSGRCWSSDAYNPVPGVMKGVPSSRDYNGGFASKLMAKDLNLAAASAEEVGHKSPLIS 314
Query: 241 QAQDIYAKLCENGHDSKDFSCVFQHYYGGKDEV 273
+AQ+IY K+CE GH++KDFSCVF+H+Y GKDEV
Sbjct: 315 KAQEIYKKMCEEGHETKDFSCVFRHFYNGKDEV 347
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449435530|ref|XP_004135548.1| PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 442 bits (1136), Expect = e-122, Method: Compositional matrix adjust.
Identities = 212/272 (77%), Positives = 242/272 (88%)
Query: 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 61
+SD+GV TKETPFEVAEASDVVITMLPS SHVLDVYNG +GLL GG +RP LLIDSSTI
Sbjct: 82 YSDLGVATKETPFEVAEASDVVITMLPSPSHVLDVYNGSHGLLHGGCHIRPWLLIDSSTI 141
Query: 62 DPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAA 121
DPQTSR +SA VS+ ILKEK+ SWE+PVMLDAPVSGGVLAA+A TLTFMVGG E+AY AA
Sbjct: 142 DPQTSRELSAVVSSRILKEKRGSWESPVMLDAPVSGGVLAADARTLTFMVGGLEEAYHAA 201
Query: 122 KPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 181
K LFLSMGK ++YCGG+GNG+AAKICNNL +AVSMLGVSEAL LGQSLGISA TLTK+ N
Sbjct: 202 KALFLSMGKGSVYCGGSGNGSAAKICNNLALAVSMLGVSEALALGQSLGISAKTLTKVFN 261
Query: 182 SSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQ 241
SSSARCWSS+SYNPVPGVME VP++R+Y GGFA+KLM KDLNLA ASA EVG+ PLTSQ
Sbjct: 262 SSSARCWSSESYNPVPGVMEEVPSARDYDGGFATKLMFKDLNLAKASAGEVGLQHPLTSQ 321
Query: 242 AQDIYAKLCENGHDSKDFSCVFQHYYGGKDEV 273
AQ+IY KLCE+G+++KDFSCVF+H+Y G DE+
Sbjct: 322 AQEIYKKLCEDGYENKDFSCVFRHFYSGDDEL 353
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|7431189|pir||T10635 3-hydroxyisobutyrate dehydrogenase homolog T13K14.90 - Arabidopsis thaliana gi|5262783|emb|CAB45888.1| 3-hydroxyisobutyrate dehydrogenase-like protein [Arabidopsis thaliana] gi|7268890|emb|CAB79093.1| 3-hydroxyisobutyrate dehydrogenase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 209/297 (70%), Positives = 242/297 (81%), Gaps = 24/297 (8%)
Query: 1 MFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST 60
MF++MGV ++ETP+EVA+ S+VVITMLPSSSHV+DVY G NGLL G N +RP L IDSST
Sbjct: 75 MFTEMGVSSRETPYEVAQDSEVVITMLPSSSHVMDVYTGTNGLLLGENDIRPALFIDSST 134
Query: 61 IDPQTSRNISAAVSNCILKEKK------------------------DSWENPVMLDAPVS 96
IDPQT+R IS AVSNC LKEK+ D+WE PVMLDAPVS
Sbjct: 135 IDPQTTRKISLAVSNCNLKEKRASFCSSCEQVEIVSFSLVSSIFDVDNWEKPVMLDAPVS 194
Query: 97 GGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSM 156
GGVLAAEAGTLTFMVGG EDAY AA+P+ SMG+ +IYCGG+GNG+AAKICNNL MAVSM
Sbjct: 195 GGVLAAEAGTLTFMVGGPEDAYLAARPILQSMGRTSIYCGGSGNGSAAKICNNLAMAVSM 254
Query: 157 LGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASK 216
LG SEAL LGQSLGISASTLT++LN+SS RCWSSD+YNPVPGVM+GVP+SR+Y GGFASK
Sbjct: 255 LGTSEALALGQSLGISASTLTEVLNTSSGRCWSSDAYNPVPGVMKGVPSSRDYNGGFASK 314
Query: 217 LMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKDEV 273
LMAKDLNLA ASA+EVG PL S+AQ+IY K+CE GH++KDFSCVF+H+Y GKDEV
Sbjct: 315 LMAKDLNLAAASAEEVGHKSPLISKAQEIYKKMCEEGHETKDFSCVFRHFYNGKDEV 371
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297799966|ref|XP_002867867.1| hypothetical protein ARALYDRAFT_329506 [Arabidopsis lyrata subsp. lyrata] gi|297313703|gb|EFH44126.1| hypothetical protein ARALYDRAFT_329506 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 208/297 (70%), Positives = 242/297 (81%), Gaps = 24/297 (8%)
Query: 1 MFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST 60
MF++MGV +ETP++VA+ S+VVITMLPSSSHV+DVY G NGLL G N++RP LLIDSST
Sbjct: 76 MFTEMGVSARETPYQVAQDSEVVITMLPSSSHVMDVYTGTNGLLLGENAIRPALLIDSST 135
Query: 61 IDPQTSRNISAAVSNCILKEKKDS------------------------WENPVMLDAPVS 96
IDPQT+R IS AVSNC LKEK+ S WE PVMLDAPVS
Sbjct: 136 IDPQTTRKISLAVSNCNLKEKRASFCSSCQQVEIIQFSIVSSIIDAGNWEKPVMLDAPVS 195
Query: 97 GGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSM 156
GGVLAAEAGTLTFMVGG +DAY AA+P+ SMG+ +IYCGG+GNG+AAKICNNL MAVSM
Sbjct: 196 GGVLAAEAGTLTFMVGGPKDAYVAARPILQSMGRTSIYCGGSGNGSAAKICNNLAMAVSM 255
Query: 157 LGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASK 216
LG SEAL LGQSLGISASTLT++LN+SS RCWSSD+YNPVPGVM+GVP+SR+Y GGFASK
Sbjct: 256 LGTSEALALGQSLGISASTLTEVLNTSSGRCWSSDAYNPVPGVMKGVPSSRDYNGGFASK 315
Query: 217 LMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKDEV 273
LMAKDLNLA ASA+EVG PL S+AQ+IY K+CE GH++KDFSCVF+H+Y GKDEV
Sbjct: 316 LMAKDLNLAAASAEEVGHKSPLISKAQEIYKKMCEEGHETKDFSCVFRHFYNGKDEV 372
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357448533|ref|XP_003594542.1| hypothetical protein MTR_2g030400 [Medicago truncatula] gi|355483590|gb|AES64793.1| hypothetical protein MTR_2g030400 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 201/272 (73%), Positives = 236/272 (86%)
Query: 1 MFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST 60
MFS MGVPT +TP+EV+EASD+VITMLPSS+HV+DVY GP+GLL GG +RP LLIDSST
Sbjct: 77 MFSQMGVPTMKTPYEVSEASDIVITMLPSSAHVIDVYTGPDGLLHGGKRIRPWLLIDSST 136
Query: 61 IDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQA 120
IDPQTSRN+SA +SN IL+E++ WE PV LDAPVSG ++AAEAGTLTFMVGGSE+A+
Sbjct: 137 IDPQTSRNLSATISNYILRERQGDWEKPVKLDAPVSGSIIAAEAGTLTFMVGGSEEAFLT 196
Query: 121 AKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 180
AK LFLSMGK+TIYCG AG+G+AAKICNNL +AVSMLG+SEAL LGQSLG++ASTLT+I
Sbjct: 197 AKSLFLSMGKSTIYCGEAGSGSAAKICNNLALAVSMLGISEALALGQSLGVAASTLTEIF 256
Query: 181 NSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTS 240
N SSARCWSSD+YNPVPG+MEGVP+S++Y GGFASKLMAKDLNLA+ SAK G PLTS
Sbjct: 257 NCSSARCWSSDAYNPVPGLMEGVPSSKDYNGGFASKLMAKDLNLAVESAKLAGCKYPLTS 316
Query: 241 QAQDIYAKLCENGHDSKDFSCVFQHYYGGKDE 272
QAQ IY +LC GHD+KDFSC F+H+Y G DE
Sbjct: 317 QAQKIYTELCNGGHDAKDFSCAFRHFYSGMDE 348
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356533083|ref|XP_003535098.1| PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 205/272 (75%), Positives = 233/272 (85%)
Query: 1 MFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST 60
MFS MGVPTK+TP+EV+EASDVVITMLP+S+HV+DVY GPNGLL GG +RP LL+DSST
Sbjct: 68 MFSQMGVPTKKTPYEVSEASDVVITMLPTSAHVIDVYTGPNGLLHGGKLLRPWLLLDSST 127
Query: 61 IDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQA 120
IDPQTSRN+SA V+N IL+EKK WE P LDAPVSG V AAEAGTLTFMVGGSE+A+ A
Sbjct: 128 IDPQTSRNLSATVTNYILREKKGEWEKPFKLDAPVSGSVTAAEAGTLTFMVGGSEEAFLA 187
Query: 121 AKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 180
AKPL SMGK+ IYCGGAG+G+AAKICNNL +AVSMLG+SEAL LGQSLG+SASTLT I
Sbjct: 188 AKPLLFSMGKSAIYCGGAGSGSAAKICNNLALAVSMLGISEALALGQSLGVSASTLTNIF 247
Query: 181 NSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTS 240
N SSARCWSSD+YNPVPG+MEGVP+S +Y GGFASKLMAKDLNLA+ SAK G PLTS
Sbjct: 248 NCSSARCWSSDAYNPVPGLMEGVPSSGDYNGGFASKLMAKDLNLAVESAKLAGCKYPLTS 307
Query: 241 QAQDIYAKLCENGHDSKDFSCVFQHYYGGKDE 272
QAQ IY +LC GH++KDFSC F+HYY G DE
Sbjct: 308 QAQKIYTELCSVGHEAKDFSCAFRHYYSGIDE 339
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 273 | ||||||
| TAIR|locus:2133134 | 347 | AT4G20930 [Arabidopsis thalian | 1.0 | 0.786 | 0.765 | 1.1e-112 | |
| UNIPROTKB|Q5ZLI9 | 333 | HIBADH "Uncharacterized protei | 0.919 | 0.753 | 0.536 | 7.2e-68 | |
| UNIPROTKB|F1PYB6 | 336 | HIBADH "Uncharacterized protei | 0.919 | 0.747 | 0.517 | 6e-64 | |
| MGI|MGI:1889802 | 335 | Hibadh "3-hydroxyisobutyrate d | 0.923 | 0.752 | 0.515 | 7.6e-64 | |
| UNIPROTKB|Q2HJD7 | 336 | HIBADH "3-hydroxyisobutyrate d | 0.919 | 0.747 | 0.517 | 1.2e-63 | |
| UNIPROTKB|P31937 | 336 | HIBADH "3-hydroxyisobutyrate d | 0.919 | 0.747 | 0.513 | 3.3e-63 | |
| UNIPROTKB|Q5R5E7 | 336 | HIBADH "3-hydroxyisobutyrate d | 0.919 | 0.747 | 0.513 | 3.3e-63 | |
| RGD|708399 | 335 | Hibadh "3-hydroxyisobutyrate d | 0.923 | 0.752 | 0.507 | 5.4e-63 | |
| ZFIN|ZDB-GENE-040801-264 | 328 | hibadha "3-hydroxyisobutyrate | 0.912 | 0.759 | 0.509 | 8.8e-63 | |
| ZFIN|ZDB-GENE-040426-1582 | 329 | hibadhb "3-hydroxyisobutyrate | 0.912 | 0.756 | 0.509 | 1.1e-62 |
| TAIR|locus:2133134 AT4G20930 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1112 (396.5 bits), Expect = 1.1e-112, P = 1.1e-112
Identities = 209/273 (76%), Positives = 242/273 (88%)
Query: 1 MFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST 60
MF++MGV ++ETP+EVA+ S+VVITMLPSSSHV+DVY G NGLL G N +RP L IDSST
Sbjct: 75 MFTEMGVSSRETPYEVAQDSEVVITMLPSSSHVMDVYTGTNGLLLGENDIRPALFIDSST 134
Query: 61 IDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQA 120
IDPQT+R IS AVSNC LKEK+D+WE PVMLDAPVSGGVLAAEAGTLTFMVGG EDAY A
Sbjct: 135 IDPQTTRKISLAVSNCNLKEKRDNWEKPVMLDAPVSGGVLAAEAGTLTFMVGGPEDAYLA 194
Query: 121 AKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 180
A+P+ SMG+ +IYCGG+GNG+AAKICNNL MAVSMLG SEAL LGQSLGISASTLT++L
Sbjct: 195 ARPILQSMGRTSIYCGGSGNGSAAKICNNLAMAVSMLGTSEALALGQSLGISASTLTEVL 254
Query: 181 NSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTS 240
N+SS RCWSSD+YNPVPGVM+GVP+SR+Y GGFASKLMAKDLNLA ASA+EVG PL S
Sbjct: 255 NTSSGRCWSSDAYNPVPGVMKGVPSSRDYNGGFASKLMAKDLNLAAASAEEVGHKSPLIS 314
Query: 241 QAQDIYAKLCENGHDSKDFSCVFQHYYGGKDEV 273
+AQ+IY K+CE GH++KDFSCVF+H+Y GKDEV
Sbjct: 315 KAQEIYKKMCEEGHETKDFSCVFRHFYNGKDEV 347
|
|
| UNIPROTKB|Q5ZLI9 HIBADH "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
Identities = 141/263 (53%), Positives = 174/263 (66%)
Query: 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 61
F D+G ++P +VAE +D +ITMLPSS + ++VY G NG+L+ + LLIDSSTI
Sbjct: 75 FQDLGAQVTDSPADVAERADRIITMLPSSPNAIEVYTGANGILK--KVKKGSLLIDSSTI 132
Query: 62 DPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAA 121
DP S+ ++ AV EK + V +DAPVSGGV AA AG LTFMVGG E + AA
Sbjct: 133 DPSVSKELAKAV------EKMGA----VFMDAPVSGGVGAARAGNLTFMVGGMEQEFDAA 182
Query: 122 KPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 181
K L + MG N +YCG G G AAKICNN+ +A+SM+G +E + LG LG+ L KILN
Sbjct: 183 KELLICMGSNVVYCGEVGTGQAAKICNNMLLAISMIGTAETMNLGIRLGLDPKLLAKILN 242
Query: 182 SSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQ 241
SS RCWSSD+YNPVPGVMEGVP++ NY GGF + LMAKDL LA SA PL SQ
Sbjct: 243 MSSGRCWSSDTYNPVPGVMEGVPSANNYQGGFGTTLMAKDLGLAQISATNTKTPVPLGSQ 302
Query: 242 AQDIYAKLCENGHDSKDFSCVFQ 264
A IY +C G+ KDFS VFQ
Sbjct: 303 AHQIYRMMCAKGYALKDFSAVFQ 325
|
|
| UNIPROTKB|F1PYB6 HIBADH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
Identities = 136/263 (51%), Positives = 171/263 (65%)
Query: 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 61
F D G +P +VAE +D +ITMLP+S + ++ Y+G NG+L+ + LLIDSSTI
Sbjct: 78 FQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILK--KVKKGSLLIDSSTI 135
Query: 62 DPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAA 121
DP S+ ++ V EK + V +DAPVSGGV AA +G LTFMVGG ED + AA
Sbjct: 136 DPAVSKELAKEV------EKMGA----VFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAA 185
Query: 122 KPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 181
+ L MG N +YCG G G AAKICNN+ +A+SM+G +EA+ LG LG+ L KILN
Sbjct: 186 QELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILN 245
Query: 182 SSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQ 241
SS RCWSSD+YNPVPGVM+GVP++ NY GGF + LMAKDL LA SA L SQ
Sbjct: 246 MSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGATLMAKDLGLAQDSATSTKSPILLGSQ 305
Query: 242 AQDIYAKLCENGHDSKDFSCVFQ 264
A IY +C G+ KDFS VFQ
Sbjct: 306 AHQIYRMMCAKGYSKKDFSSVFQ 328
|
|
| MGI|MGI:1889802 Hibadh "3-hydroxyisobutyrate dehydrogenase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
Identities = 136/264 (51%), Positives = 170/264 (64%)
Query: 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 61
F + G +P EVAE +D +ITMLPSS + ++VY+G NG+L+ + LLIDSSTI
Sbjct: 77 FKEAGEQVASSPAEVAEKADRIITMLPSSMNAVEVYSGANGILK--KVKKGSLLIDSSTI 134
Query: 62 DPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAA 121
DP S+ ++ V EK + V +DAPVSGGV AA +G LTFMVGG ED + AA
Sbjct: 135 DPSVSKELAKEV------EKMGA----VFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAA 184
Query: 122 KPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 181
+ L MG N +YCG G G +AKICNN+ +A+SM+G +EA+ LG G+ L KILN
Sbjct: 185 QELLECMGSNVVYCGAVGTGQSAKICNNMLLAISMIGTAEAMNLGIRSGLDPKLLAKILN 244
Query: 182 SSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQ 241
SS RCWSSD+YNPVPGVM GVP+S NY GGF + LMAKDL LA SA L S
Sbjct: 245 MSSGRCWSSDTYNPVPGVMHGVPSSNNYQGGFGTTLMAKDLGLAQDSATSTKTPILLGSL 304
Query: 242 AQDIYAKLCENGHDSKDFSCVFQH 265
A IY +C G+ KDFS VFQ+
Sbjct: 305 AHQIYRMMCSKGYSKKDFSSVFQY 328
|
|
| UNIPROTKB|Q2HJD7 HIBADH "3-hydroxyisobutyrate dehydrogenase, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
Identities = 136/263 (51%), Positives = 171/263 (65%)
Query: 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 61
F D G +P +VAE +D +ITMLP+S + ++ Y+G NG+L+ + LLIDSSTI
Sbjct: 78 FLDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILK--KVKKGSLLIDSSTI 135
Query: 62 DPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAA 121
DP S+ ++ V EK + V +DAPVSGGV AA +G LTFMVGG E+ + AA
Sbjct: 136 DPMVSKELAKEV------EKMGA----VFMDAPVSGGVGAARSGNLTFMVGGVEEEFAAA 185
Query: 122 KPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 181
+ L MG N +YCG G G AAKICNNL +A+SM+G +EA+ LG LG+ L KILN
Sbjct: 186 QELLGCMGSNVVYCGAVGTGQAAKICNNLLLAISMIGTAEAMNLGIRLGLDPKLLAKILN 245
Query: 182 SSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQ 241
SS RCWSSD+YNPVPGVM+GVP++ NY GGF + LMAKDL LA SA L SQ
Sbjct: 246 MSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSQ 305
Query: 242 AQDIYAKLCENGHDSKDFSCVFQ 264
A IY +C G+ KDFS VFQ
Sbjct: 306 AHQIYRMMCAKGYSKKDFSSVFQ 328
|
|
| UNIPROTKB|P31937 HIBADH "3-hydroxyisobutyrate dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
Identities = 135/263 (51%), Positives = 170/263 (64%)
Query: 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 61
F D G +P +VAE +D +ITMLP+S + ++ Y+G NG+L+ + LLIDSSTI
Sbjct: 78 FQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILK--KVKKGSLLIDSSTI 135
Query: 62 DPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAA 121
DP S+ ++ V EK + V +DAPVSGGV AA +G LTFMVGG ED + AA
Sbjct: 136 DPAVSKELAKEV------EKMGA----VFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAA 185
Query: 122 KPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 181
+ L MG N +YCG G G AAKICNN+ +A+SM+G +EA+ LG LG+ L KILN
Sbjct: 186 QELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILN 245
Query: 182 SSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQ 241
SS RCWSSD+YNPVPGVM+GVP++ NY GGF + LMAKDL LA SA L S
Sbjct: 246 MSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSL 305
Query: 242 AQDIYAKLCENGHDSKDFSCVFQ 264
A IY +C G+ KDFS VFQ
Sbjct: 306 AHQIYRMMCAKGYSKKDFSSVFQ 328
|
|
| UNIPROTKB|Q5R5E7 HIBADH "3-hydroxyisobutyrate dehydrogenase, mitochondrial" [Pongo abelii (taxid:9601)] | Back alignment and assigned GO terms |
|---|
Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
Identities = 135/263 (51%), Positives = 170/263 (64%)
Query: 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 61
F D G +P +VAE +D +ITMLP+S + ++ Y+G NG+L+ + LLIDSSTI
Sbjct: 78 FQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILK--KVKKGSLLIDSSTI 135
Query: 62 DPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAA 121
DP S+ ++ V EK + V +DAPVSGGV AA +G LTFMVGG ED + AA
Sbjct: 136 DPAVSKELAKEV------EKMGA----VFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAA 185
Query: 122 KPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 181
+ L MG N +YCG G G AAKICNN+ +A+SM+G +EA+ LG LG+ L KILN
Sbjct: 186 QELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILN 245
Query: 182 SSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQ 241
SS RCWSSD+YNPVPGVM+GVP++ NY GGF + LMAKDL LA SA L S
Sbjct: 246 MSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGATLMAKDLGLAQDSATSTKSPILLGSL 305
Query: 242 AQDIYAKLCENGHDSKDFSCVFQ 264
A IY +C G+ KDFS VFQ
Sbjct: 306 AHQIYRMMCAKGYSKKDFSSVFQ 328
|
|
| RGD|708399 Hibadh "3-hydroxyisobutyrate dehydrogenase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
Identities = 134/264 (50%), Positives = 172/264 (65%)
Query: 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 61
F + G +P +VAE +D +ITMLPSS + ++VY+G NG+L+ + LLIDSSTI
Sbjct: 77 FKEAGEQVASSPADVAEKADRIITMLPSSMNSIEVYSGANGILK--KVKKGSLLIDSSTI 134
Query: 62 DPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAA 121
DP S+ ++ V EK + V +DAPVSGGV AA +G LTFMVGG E+ + AA
Sbjct: 135 DPSVSKELAKEV------EKMGA----VFMDAPVSGGVGAARSGNLTFMVGGVENEFAAA 184
Query: 122 KPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 181
+ L MG N +YCG G+G +AKICNN+ +A+SM+G +EA+ LG G+ L KILN
Sbjct: 185 QELLGCMGSNVLYCGAVGSGQSAKICNNMLLAISMIGTAEAMNLGIRSGLDPKLLAKILN 244
Query: 182 SSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQ 241
SS RCWSSD+YNPVPGVM+GVP+S NY GGF + LMAKDL LA SA L S
Sbjct: 245 MSSGRCWSSDTYNPVPGVMDGVPSSNNYQGGFGTTLMAKDLGLAQDSATSTKTPILLGSV 304
Query: 242 AQDIYAKLCENGHDSKDFSCVFQH 265
A IY +C G+ KDFS VFQ+
Sbjct: 305 AHQIYRMMCSKGYSKKDFSSVFQY 328
|
|
| ZFIN|ZDB-GENE-040801-264 hibadha "3-hydroxyisobutyrate dehydrogenase a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
Identities = 133/261 (50%), Positives = 168/261 (64%)
Query: 4 DMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDP 63
D G ++P EVAE +D +ITMLPSS +V++VY G N +L+ + LLIDSSTIDP
Sbjct: 73 DSGAQILDSPAEVAEKADRIITMLPSSPNVIEVYTGSNSILR--KVKKGTLLIDSSTIDP 130
Query: 64 QTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKP 123
S+ ++ A EK + V +DAPVSGGV AA LTF+VGG E+ Y AA+
Sbjct: 131 AVSKEMAVAA------EKMGA----VFMDAPVSGGVGAASLAKLTFLVGGVEEEYNAAQE 180
Query: 124 LFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS 183
L MG N +YCG G+G AAKICNN+ +A+ MLG +E + LG LG+ L KILN S
Sbjct: 181 LLTCMGANVVYCGQVGSGQAAKICNNMLLAIGMLGTAETMNLGIRLGLDPKLLAKILNMS 240
Query: 184 SARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQ 243
S RCWSSD+YNPVPGVMEGVP++ NY GGF + LMAKDL A +A PL S A
Sbjct: 241 SGRCWSSDTYNPVPGVMEGVPSANNYQGGFITTLMAKDLGFAQNTATSTRTPIPLGSLAH 300
Query: 244 DIYAKLCENGHDSKDFSCVFQ 264
+Y +C G+ +KDFS VFQ
Sbjct: 301 QVYRTMCARGYSNKDFSSVFQ 321
|
|
| ZFIN|ZDB-GENE-040426-1582 hibadhb "3-hydroxyisobutyrate dehydrogenase b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
Identities = 133/261 (50%), Positives = 170/261 (65%)
Query: 4 DMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDP 63
++G ++P +VA+ +D +ITMLPS+ +V+DVY GPNG+L+ + LLIDSSTIDP
Sbjct: 73 ELGAQILDSPADVADKADRIITMLPSNPNVVDVYTGPNGILK--KVKKGSLLIDSSTIDP 130
Query: 64 QTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKP 123
S+ ++ A EK + V + APVSGGV AA +G LTFMVGG E+ + AAK
Sbjct: 131 AVSKEMAVAA------EKLGA----VFMGAPVSGGVGAATSGKLTFMVGGPEEEFNAAKE 180
Query: 124 LFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS 183
L MG N +YCG G G AAKICNN+ +A+ M+G +E + LG LG+ L KILN S
Sbjct: 181 LLSCMGANVVYCGQVGTGQAAKICNNMLLAIGMIGTAETMNLGIRLGLDPKLLAKILNMS 240
Query: 184 SARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQ 243
S RCWSSD+YNPVPGVMEGVP++ NY GGF + LM KDL LA SA L S A
Sbjct: 241 SGRCWSSDTYNPVPGVMEGVPSANNYQGGFGTTLMTKDLGLAQNSATNTKTPVLLGSVAH 300
Query: 244 DIYAKLCENGHDSKDFSCVFQ 264
IY +C G+ +KDFS VFQ
Sbjct: 301 QIYRMMCGRGYANKDFSSVFQ 321
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| P28811 | MMSB_PSEAE | 1, ., 1, ., 1, ., 3, 1 | 0.4 | 0.9340 | 0.8557 | yes | no |
| Q5R5E7 | 3HIDH_PONAB | 1, ., 1, ., 1, ., 3, 1 | 0.5113 | 0.9230 | 0.75 | yes | no |
| P63935 | MMSB_MYCTU | 1, ., 1, ., 1, ., 3, 1 | 0.4030 | 0.8937 | 0.8299 | yes | no |
| P63936 | MMSB_MYCBO | 1, ., 1, ., 1, ., 3, 1 | 0.4030 | 0.8937 | 0.8299 | yes | no |
| Q9SUC0 | 3HIDH_ARATH | 1, ., 1, ., 1, ., 3, 1 | 0.7655 | 1.0 | 0.7867 | yes | no |
| P29266 | 3HIDH_RAT | 1, ., 1, ., 1, ., 3, 1 | 0.5075 | 0.9230 | 0.7522 | yes | no |
| P31937 | 3HIDH_HUMAN | 1, ., 1, ., 1, ., 3, 1 | 0.5113 | 0.9230 | 0.75 | yes | no |
| O34948 | YKWC_BACSU | 1, ., 1, ., -, ., - | 0.3333 | 0.8864 | 0.8402 | yes | no |
| Q99L13 | 3HIDH_MOUSE | 1, ., 1, ., 1, ., 3, 1 | 0.5151 | 0.9230 | 0.7522 | yes | no |
| Q2HJD7 | 3HIDH_BOVIN | 1, ., 1, ., 1, ., 3, 1 | 0.5151 | 0.9230 | 0.75 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 273 | |||
| TIGR01692 | 288 | TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogen | 4e-98 | |
| COG2084 | 286 | COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase | 4e-80 | |
| PRK11559 | 296 | PRK11559, garR, tartronate semialdehyde reductase; | 5e-48 | |
| TIGR01505 | 291 | TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropiona | 4e-45 | |
| pfam03446 | 163 | pfam03446, NAD_binding_2, NAD binding domain of 6- | 1e-38 | |
| PRK15059 | 292 | PRK15059, PRK15059, tartronate semialdehyde reduct | 3e-33 | |
| PRK15461 | 296 | PRK15461, PRK15461, NADH-dependent gamma-hydroxybu | 2e-26 | |
| PLN02858 | 1378 | PLN02858, PLN02858, fructose-bisphosphate aldolase | 1e-19 | |
| PLN02858 | 1378 | PLN02858, PLN02858, fructose-bisphosphate aldolase | 7e-16 | |
| TIGR00872 | 298 | TIGR00872, gnd_rel, 6-phosphogluconate dehydrogena | 8e-08 | |
| COG1023 | 300 | COG1023, Gnd, Predicted 6-phosphogluconate dehydro | 9e-07 | |
| PRK09599 | 301 | PRK09599, PRK09599, 6-phosphogluconate dehydrogena | 1e-05 | |
| PRK12490 | 299 | PRK12490, PRK12490, 6-phosphogluconate dehydrogena | 4e-04 |
| >gnl|CDD|130753 TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Score = 288 bits (739), Expect = 4e-98
Identities = 123/265 (46%), Positives = 161/265 (60%), Gaps = 12/265 (4%)
Query: 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 61
G +P E AE +D VITMLP+ HV+ VY+G G+L + LLID STI
Sbjct: 35 AVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILP--KVAKGSLLIDCSTI 92
Query: 62 DPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAA 121
DP ++R ++ + V +DAPVSGGV A AGTLTFMVGG + + AA
Sbjct: 93 DPDSARKLAELAAA----------HGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAA 142
Query: 122 KPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 181
+P+ MG+N ++CG G G AAKICNN+ + +SM+G +EA+ LG+ LG+ L +I N
Sbjct: 143 EPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIAN 202
Query: 182 SSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQ 241
+SS RCWSSD+YNPVPGVM PAS Y GGF + LM KDL LA +AK G PL +
Sbjct: 203 TSSGRCWSSDTYNPVPGVMPQAPASNGYQGGFGTALMLKDLGLAQDAAKSAGAPTPLGAL 262
Query: 242 AQDIYAKLCENGHDSKDFSCVFQHY 266
A+ +Y+ + GH KDFS V Q
Sbjct: 263 ARQLYSLFDDKGHGGKDFSSVIQLL 287
|
3-hydroxyisobutyrate dehydrogenase is an enzyme that catalyzes the NAD+-dependent oxidation of 3-hydroxyisobutyrate to methylmalonate semialdehyde of the valine catabolism pathway. In Pseudomonas aeruginosa, 3-hydroxyisobutyrate dehydrogenase (mmsB) is co-induced with methylmalonate-semialdehyde dehydrogenase (mmsA) when grown on medium containing valine as the sole carbon source. The positive transcriptional regulator of this operon (mmsR) is located upstream of these genes and has been identified as a member of the XylS/AraC family of transcriptional regulators. 3-hydroxyisobutyrate dehydrogenase shares high sequence homology to the characterized 3-hydroxyisobutyrate dehydrogenase from rat liver with conservation of proposed NAD+ binding residues at the N-terminus (G-8,10,13,24 and D-31). This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446) [Energy metabolism, Amino acids and amines]. Length = 288 |
| >gnl|CDD|224995 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 242 bits (621), Expect = 4e-80
Identities = 104/261 (39%), Positives = 148/261 (56%), Gaps = 19/261 (7%)
Query: 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQT 65
G +P E A +DVVITMLP + V V G NGLL+G ++ID STI P+T
Sbjct: 44 GATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENGLLEG--LKPGAIVIDMSTISPET 101
Query: 66 SRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLF 125
+R ++AA L K LDAPVSGGV A AGTLT MVGG +A++ AKP+
Sbjct: 102 ARELAAA-----LAAKGLE-----FLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVL 151
Query: 126 LSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSA 185
+MGKN ++ G G G AAK+ NN+ +A ++ ++EAL L + G+ + ++++ +A
Sbjct: 152 EAMGKNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAA 211
Query: 186 RCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDI 245
W ++Y P M ++ GFA LM KDL LAL +AKE+G PLT+ A ++
Sbjct: 212 GSWILENYGP---RM----LEGDFSPGFAVDLMLKDLGLALDAAKELGAPLPLTALAAEL 264
Query: 246 YAKLCENGHDSKDFSCVFQHY 266
YAK G +DFS + +
Sbjct: 265 YAKAAAAGGGEEDFSALIKLL 285
|
Length = 286 |
| >gnl|CDD|183197 PRK11559, garR, tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 160 bits (408), Expect = 5e-48
Identities = 91/262 (34%), Positives = 133/262 (50%), Gaps = 21/262 (8%)
Query: 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQ 64
G T T VAE DV+ITMLP+S HV +V G NG+++G +P ++ID S+I P
Sbjct: 45 GAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGIIEG---AKPGTVVIDMSSIAPL 101
Query: 65 TSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPL 124
SR I+AA LK K MLDAPVSGG A GTL+ MVGG + + L
Sbjct: 102 ASREIAAA-----LKAK-----GIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDL 151
Query: 125 FLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 184
+M + ++ G G G K+ N + +A+++ +SEAL L G++ + + +
Sbjct: 152 MKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGL 211
Query: 185 ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQD 244
A D+ P VM+ RN+ GF L KDL AL ++ VG PLT+ +
Sbjct: 212 AGSTVLDA--KAPMVMD-----RNFKPGFRIDLHIKDLANALDTSHGVGAPLPLTAAVME 264
Query: 245 IYAKLCENGHDSKDFSCVFQHY 266
+ L +G + D S + +Y
Sbjct: 265 MMQALKADGLGTADHSALACYY 286
|
Length = 296 |
| >gnl|CDD|130569 TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 4e-45
Identities = 92/262 (35%), Positives = 133/262 (50%), Gaps = 19/262 (7%)
Query: 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 64
G T ET +V E +DV+ TM+P S V +V G NG+++ + + L+D S+I P
Sbjct: 41 AGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGIIE--GAKPGKTLVDMSSISPI 98
Query: 65 TSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPL 124
S+ + AV KEK LDAPVSGG + A GTL+ MVGG + + KPL
Sbjct: 99 ESKRFAKAV-----KEKGID-----YLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPL 148
Query: 125 FLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 184
F ++GKN + GG G+G K+ N + +A+++ VSEAL G+ + + L
Sbjct: 149 FEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGL 208
Query: 185 ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQD 244
A + V++ R + GF L KDLNLAL SAK VG + P T+ Q+
Sbjct: 209 AGSTVLEVKGER--VID-----RTFKPGFRIDLHQKDLNLALDSAKAVGANLPNTATVQE 261
Query: 245 IYAKLCENGHDSKDFSCVFQHY 266
++ L NG D S + Q
Sbjct: 262 LFNTLRANGGGQLDHSALVQAL 283
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. Length = 291 |
| >gnl|CDD|217563 pfam03446, NAD_binding_2, NAD binding domain of 6-phosphogluconate dehydrogenase | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 1e-38
Identities = 52/128 (40%), Positives = 72/128 (56%), Gaps = 14/128 (10%)
Query: 11 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNI 69
+P E ++DVVITM+P+ + V V G +GLL G ++P ++ID ST DP +R
Sbjct: 48 ASPAEFVASADVVITMVPAGAAVDAVILGEDGLLPG---LKPGDIIIDGSTSDPDDTRRR 104
Query: 70 SAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMG 129
+ L EK LDAPVSGG AEAGTL+ MVGG E+A++ KP+ +MG
Sbjct: 105 AKE-----LAEK-----GIHFLDAPVSGGEEGAEAGTLSIMVGGDEEAFERVKPILEAMG 154
Query: 130 KNTIYCGG 137
+ G
Sbjct: 155 ACVTHYIG 162
|
The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold. Length = 163 |
| >gnl|CDD|185019 PRK15059, PRK15059, tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 3e-33
Identities = 84/260 (32%), Positives = 128/260 (49%), Gaps = 19/260 (7%)
Query: 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 64
+G + ET +V EASD++ M+P + V +V G NG + S++ + ++D S+I P
Sbjct: 41 LGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKA--SLKGKTIVDMSSISPI 98
Query: 65 TSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPL 124
++ + V+ LDAPVSGG + A GTL+ MVGG E ++ KPL
Sbjct: 99 ETKRFARQVNEL----------GGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPL 148
Query: 125 FLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 184
F +GKN GG G+G K+ N + +A+++ VSEAL G + + L
Sbjct: 149 FELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGG- 207
Query: 185 ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQD 244
++S V G R + GF L KDLNLAL SAK + ++ P T+ Q+
Sbjct: 208 ---FASSRILEVHGERM---IKRTFNPGFKIALHQKDLNLALQSAKALALNLPNTATCQE 261
Query: 245 IYAKLCENGHDSKDFSCVFQ 264
++ NG D S + Q
Sbjct: 262 LFNTCAANGGSQLDHSALVQ 281
|
Length = 292 |
| >gnl|CDD|185358 PRK15461, PRK15461, NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 2e-26
Identities = 77/263 (29%), Positives = 130/263 (49%), Gaps = 20/263 (7%)
Query: 4 DMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDP 63
D G +P + A ++ VITMLP+ V V G NG+ +G + R L+ID STI P
Sbjct: 42 DKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGVCEGLS--RDALVIDMSTIHP 99
Query: 64 QTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKP 123
+ + A ++ K S M+D PV A GTL + GG+ + + A P
Sbjct: 100 LQTDKLIAD-----MQAKGFS-----MMDVPVGRTSDNAITGTLLLLAGGTAEQVERATP 149
Query: 124 LFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVS-EALTLGQSLGISASTLTKILNS 182
+ ++MG I GG G G K+ NN M++++ +S EA L ++LG+S K+++
Sbjct: 150 ILMAMGNELINAGGPGMGIRVKLINNY-MSIALNALSAEAAVLCEALGLSFDVALKVMSG 208
Query: 183 SSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQA 242
++A + P V++G + F L KDL +AL A ++ V PL + +
Sbjct: 209 TAAGKGHFTTTWP-NKVLKG-----DLSPAFMIDLAHKDLGIALDVANQLHVPMPLGAAS 262
Query: 243 QDIYAKLCENGHDSKDFSCVFQH 265
+++Y++ G +D+S + +
Sbjct: 263 REVYSQARAAGRGRQDWSAILEQ 285
|
Length = 296 |
| >gnl|CDD|215463 PLN02858, PLN02858, fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Score = 88.0 bits (218), Expect = 1e-19
Identities = 65/250 (26%), Positives = 115/250 (46%), Gaps = 26/250 (10%)
Query: 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNG---LLQGGNSVRPQLLIDS 58
F + G +P EVA+ DV++ M+ + +V G G L G S+ + S
Sbjct: 363 FENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLGAVSALPAGASI-----VLS 417
Query: 59 STIDPQTSRNISAAVSNCILKEK-KDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDA 117
ST+ P V L+ + ++ + ++DAPVSGGV A GTLT M G+++A
Sbjct: 418 STVSP-------GFVIQ--LERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGTDEA 468
Query: 118 YQAAKPLFLSMG-KNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTL 176
++A + ++ K + GG G G+ K+ N L V + +EA+ G LG++ L
Sbjct: 469 LKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKL 528
Query: 177 TKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDC 236
I++++ W + N VP +++ +Y A + KDL + +
Sbjct: 529 FDIISNAGGTSWMFE--NRVPHMLDN-----DYTPYSALDIFVKDLGIVSREGSSRKIPL 581
Query: 237 PLTSQAQDIY 246
L++ A ++
Sbjct: 582 HLSTVAHQLF 591
|
Length = 1378 |
| >gnl|CDD|215463 PLN02858, PLN02858, fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 7e-16
Identities = 62/260 (23%), Positives = 113/260 (43%), Gaps = 24/260 (9%)
Query: 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQG--GNSVRPQLLIDSS 59
F ++G ++P E A+ + ++ +L V DV+ G G +G +V ++ S
Sbjct: 43 FCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAV----ILIRS 98
Query: 60 TIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQ 119
TI P + + K+ + E ++DA VS G+ G L + G DA
Sbjct: 99 TILPLQLQKLE--------KKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAIT 150
Query: 120 AAKPLFLSMGKNT-IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTK 178
A+P +M + + G G G+ K+ N L + ++ +EA+ LG GI +
Sbjct: 151 RAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYD 210
Query: 179 ILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPL 238
I+++++ W N VP +++ +Y G ++ ++L + L AK + PL
Sbjct: 211 IISNAAGSSWI--FKNHVPLLLKD-----DYIEGRFLNVLVQNLGIVLDMAKSLPFPLPL 263
Query: 239 TSQA--QDIYAKLCENGHDS 256
+ A Q I G D+
Sbjct: 264 LAVAHQQLISGSSSMQGDDT 283
|
Length = 1378 |
| >gnl|CDD|233163 TIGR00872, gnd_rel, 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 8e-08
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 90 MLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMG---KNTIYCGGAGNGAAAKI 146
+LD SGGV E G FM+GG +A+ A+PLF + + +YCG G+G K+
Sbjct: 114 LLDCGTSGGVWGRERG-YCFMIGGDGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKM 172
Query: 147 CNN 149
+N
Sbjct: 173 VHN 175
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle [Energy metabolism, Pentose phosphate pathway]. Length = 298 |
| >gnl|CDD|223954 COG1023, Gnd, Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 9e-07
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 91 LDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLF--LSMGKNT-IYCGGAGNGAAAKIC 147
LD SGGV AE G M+GG E+A + +P+F L+ G++ +YCG +G+G K+
Sbjct: 116 LDVGTSGGVWGAERG-YCLMIGGDEEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMV 174
Query: 148 NN 149
+N
Sbjct: 175 HN 176
|
Length = 300 |
| >gnl|CDD|236582 PRK09599, PRK09599, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 1e-05
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 91 LDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLF--LSMGKNT--IYCGGAGNGAAAK 145
+D SGGV E G M+GG ++A + +P+F L+ ++ G G G K
Sbjct: 116 VDVGTSGGVWGLERG-YCLMIGGDKEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVK 173
|
Length = 301 |
| >gnl|CDD|237116 PRK12490, PRK12490, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 4e-04
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 91 LDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSM---GKNTIYCGGAGNGAAAKIC 147
+D SGGV G MVGG ++ Y +P+F ++ G ++ G G+G K+
Sbjct: 116 VDCGTSGGVWGLRNG-YCLMVGGDKEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMV 174
Query: 148 NN 149
+N
Sbjct: 175 HN 176
|
Length = 299 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 273 | |||
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 100.0 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 100.0 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 100.0 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 100.0 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 100.0 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 100.0 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 100.0 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 100.0 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 100.0 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 100.0 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 100.0 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 100.0 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 100.0 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 100.0 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 99.97 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 99.97 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 99.96 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.95 | |
| PF14833 | 122 | NAD_binding_11: NAD-binding of NADP-dependent 3-hy | 99.93 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 99.92 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 99.92 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 99.91 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 99.89 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.86 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.85 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.83 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 99.82 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 99.81 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 99.7 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 99.7 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 99.66 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 99.61 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 99.61 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 99.6 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 99.54 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 99.48 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 99.47 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 99.39 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.33 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.32 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 99.32 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.29 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.26 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 99.1 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.08 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.03 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 98.98 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 98.96 | |
| PF00984 | 96 | UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenas | 98.82 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.79 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 98.76 | |
| KOG2666 | 481 | consensus UDP-glucose/GDP-mannose dehydrogenase [C | 98.66 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.6 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 98.51 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 98.51 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 98.5 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 98.49 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 98.32 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.12 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.98 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.96 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 97.96 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 97.95 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 97.95 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.9 | |
| PLN02712 | 667 | arogenate dehydrogenase | 97.89 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 97.73 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 97.72 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.68 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 97.58 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 97.56 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 97.55 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 97.44 | |
| PF00393 | 291 | 6PGD: 6-phosphogluconate dehydrogenase, C-terminal | 97.44 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 97.35 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 97.27 | |
| PLN02256 | 304 | arogenate dehydrogenase | 97.24 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 97.11 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 97.09 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 97.08 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 97.04 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 97.03 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 97.02 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 96.86 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 96.73 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 96.72 | |
| PLN02712 | 667 | arogenate dehydrogenase | 96.7 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 96.66 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 96.5 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 96.47 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 96.47 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 96.43 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 96.43 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 96.26 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 96.18 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 96.06 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 95.88 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.78 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 95.76 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 94.82 | |
| TIGR01723 | 340 | hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr | 94.37 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 94.23 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 94.07 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 94.06 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.04 | |
| PRK00961 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 93.97 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 93.78 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 93.76 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 93.61 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 93.48 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 93.33 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.1 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 92.59 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 92.27 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 92.15 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 91.72 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 91.7 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 91.2 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 90.74 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 90.26 | |
| PLN02928 | 347 | oxidoreductase family protein | 90.08 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 89.91 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 89.89 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 89.72 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 89.09 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 89.08 | |
| PF10728 | 132 | DUF2520: Domain of unknown function (DUF2520); Int | 88.86 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 88.85 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 88.46 | |
| PF00393 | 291 | 6PGD: 6-phosphogluconate dehydrogenase, C-terminal | 88.23 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 87.84 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 87.78 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 87.47 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 86.76 | |
| COG4408 | 431 | Uncharacterized protein conserved in bacteria [Fun | 86.69 | |
| PF10100 | 429 | DUF2338: Uncharacterized protein conserved in bact | 86.24 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 85.85 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 85.42 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 85.08 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 84.65 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 84.13 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 83.72 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 83.27 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 82.52 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 81.02 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 80.02 |
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-60 Score=414.59 Aligned_cols=247 Identities=41% Similarity=0.655 Sum_probs=235.6
Q ss_pred cccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhc
Q 024066 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEK 81 (273)
Q Consensus 2 l~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~ 81 (273)
+.+.|++.+.||+|+++.+|+||+||+++++|++|+++++|+++++ ++|++||||||++|++++++++.++++
T Consensus 40 ~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g~~~~~--~~G~i~IDmSTisp~~a~~~a~~~~~~----- 112 (286)
T COG2084 40 LAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENGLLEGL--KPGAIVIDMSTISPETARELAAALAAK----- 112 (286)
T ss_pred HHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccchhhcC--CCCCEEEECCCCCHHHHHHHHHHHHhc-----
Confidence 3567999999999999999999999999999999999999999885 577999999999999999999999874
Q ss_pred cCCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHH
Q 024066 82 KDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSE 161 (273)
Q Consensus 82 ~g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~E 161 (273)
|.+|+|+||+||+..+++|+|++|+||+++.|++++|+|+.++++++|+|+.|+|+.+||+||++..+++++++|
T Consensus 113 -----G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pvl~~~g~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aE 187 (286)
T COG2084 113 -----GLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNIVHVGPVGAGQAAKLANNILLAGNIAALAE 187 (286)
T ss_pred -----CCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHHHHHhcCceEEECCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHH
Q 024066 162 ALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQ 241 (273)
Q Consensus 162 a~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~~~~ 241 (273)
++.++++.|+|++.+.+++++++++||+++.+.+ ++.+++|+|+|+++++.||++++++++++.|+++|+...
T Consensus 188 Al~la~k~Gld~~~~~~vi~~~~~~s~~~e~~~~-------~m~~~~~~p~F~v~~~~KDl~la~~~A~~~g~~lP~~~~ 260 (286)
T COG2084 188 ALALAEKAGLDPDVVLEVISGGAAGSWILENYGP-------RMLEGDFSPGFAVDLMLKDLGLALDAAKELGAPLPLTAL 260 (286)
T ss_pred HHHHHHHcCCCHHHHHHHHhccccCChHHHhhcc-------hhhcCCCCcchhHHHHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 9999999999999999999999999999987753 466889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCcHHHHHHHHh
Q 024066 242 AQDIYAKLCENGHDSKDFSCVFQHYY 267 (273)
Q Consensus 242 ~~~~~~~a~~~G~g~~d~sai~~~~~ 267 (273)
+.++|+.+.+.|+|++|++++++.++
T Consensus 261 ~~~ly~~~~~~G~g~~D~sal~~~l~ 286 (286)
T COG2084 261 AAELYAKAAAAGGGEEDFSALIKLLE 286 (286)
T ss_pred HHHHHHHHHhcCCCccChHHHHHHhC
Confidence 99999999999999999999999764
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-57 Score=384.33 Aligned_cols=254 Identities=46% Similarity=0.708 Sum_probs=234.3
Q ss_pred CcccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhh
Q 024066 1 MFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKE 80 (273)
Q Consensus 1 ~l~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~ 80 (273)
+|+++|+++++||+|++++||+||+|||++.++++|+++..|++++. .+++..+||+||++|+++++|++.++.+
T Consensus 73 ~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~Gvl~g~-~~g~~~~vDmSTidp~~s~ei~~~i~~~---- 147 (327)
T KOG0409|consen 73 EFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKSGVLSGI-RPGKKATVDMSTIDPDTSLEIAKAISNK---- 147 (327)
T ss_pred HHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCCcceeec-cCCCceEEeccccCHHHHHHHHHHHHhC----
Confidence 36789999999999999999999999999999999999999999985 3444444999999999999999999864
Q ss_pred ccCCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHH
Q 024066 81 KKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVS 160 (273)
Q Consensus 81 ~~g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~ 160 (273)
+.+|+|+||+||...|+.|+|+||+|||++.|+++.|+|+.++++++|+|..|+|+.+||+||+++++++.+++
T Consensus 148 ------~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~a 221 (327)
T KOG0409|consen 148 ------GGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASPVFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLA 221 (327)
T ss_pred ------CCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHHHHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHH
Q 024066 161 EALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTS 240 (273)
Q Consensus 161 Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~~~ 240 (273)
|++.|+++.|+|+.+++|+++.+...||. .+.|.|.+ .+++|.|+|.++++.||++++++.+.+.+.|+|+..
T Consensus 222 Eal~la~r~GLd~~~l~eiln~G~~~S~~--~~~~~p~m-----~k~dy~p~f~~~~m~KDLgla~~~a~~~~~~~P~~s 294 (327)
T KOG0409|consen 222 EALALADRLGLDAKKLLEILNTGRCWSSM--FYNPVPGM-----LKGDYNPGFALKLMVKDLGLALNAAESVKVPMPLGS 294 (327)
T ss_pred HHHHHHHHcCCCHHHHHHHHhcCCcccHH--HhCcCchh-----hcCCCCCcchHHHHHHHHHHHHHhhhccCCCCchHH
Confidence 99999999999999999999996555554 55666654 468999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCcHHHHHHHHhcCCCC
Q 024066 241 QAQDIYAKLCENGHDSKDFSCVFQHYYGGKDE 272 (273)
Q Consensus 241 ~~~~~~~~a~~~G~g~~d~sai~~~~~~~~~~ 272 (273)
.+.|+|+...+.|||+.||+++++.+++.++.
T Consensus 295 lA~qly~~~~a~G~g~~Dfs~V~~~~~~~~~~ 326 (327)
T KOG0409|consen 295 LAHQLYKSMKALGYGDKDFSAVYRAFRRLNGI 326 (327)
T ss_pred HHHHHHHHHHhcCCCccccHHHHHHHHHhccC
Confidence 99999999999999999999999988876643
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-53 Score=374.26 Aligned_cols=248 Identities=33% Similarity=0.508 Sum_probs=231.8
Q ss_pred ccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhcc
Q 024066 3 SDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 82 (273)
Q Consensus 3 ~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~ 82 (273)
.+.|++.++|+.|++++||+||+|||+++++++|+++++|+++.+ .+|++|||+||++|.++++++++++++
T Consensus 39 ~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~~~--~~g~ivvd~sT~~p~~~~~~~~~~~~~------ 110 (292)
T PRK15059 39 LSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKAS--LKGKTIVDMSSISPIETKRFARQVNEL------ 110 (292)
T ss_pred HHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhccC--CCCCEEEECCCCCHHHHHHHHHHHHHc------
Confidence 456899999999999999999999999999999999888888763 467899999999999999999999874
Q ss_pred CCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHH
Q 024066 83 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEA 162 (273)
Q Consensus 83 g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~Ea 162 (273)
|+.|+|+||+|++..+++|++++|+||++++|++++|+|+.|+++++|+|+.|+|+++||+||++...++++++|+
T Consensus 111 ----G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l~~~g~~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea 186 (292)
T PRK15059 111 ----GGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEA 186 (292)
T ss_pred ----CCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHHHHHcCCcEEeCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHH
Q 024066 163 LTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQA 242 (273)
Q Consensus 163 ~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~~~~~ 242 (273)
+.+++++|||+++++++++.+.++||+++.+.+ ++.+++|+++|+++++.||++++++++++.|+++|+.+.+
T Consensus 187 ~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~-------~~~~~~~~~~f~l~~~~KDl~l~~~~a~~~g~~~p~~~~~ 259 (292)
T PRK15059 187 LLFASKAGADPVRVRQALMGGFASSRILEVHGE-------RMIKRTFNPGFKIALHQKDLNLALQSAKALALNLPNTATC 259 (292)
T ss_pred HHHHHHcCCCHHHHHHHHHcCcccCHHHHhhch-------hhhcCCCCCCCchHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 999999999999999999998888998776543 3567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHhcC
Q 024066 243 QDIYAKLCENGHDSKDFSCVFQHYYGG 269 (273)
Q Consensus 243 ~~~~~~a~~~G~g~~d~sai~~~~~~~ 269 (273)
+++|+.+.+.|+|++|++++++.+++.
T Consensus 260 ~~~~~~a~~~g~g~~D~sa~~~~~~~~ 286 (292)
T PRK15059 260 QELFNTCAANGGSQLDHSALVQALELM 286 (292)
T ss_pred HHHHHHHHhcCCCcCChHHHHHHHHHh
Confidence 999999999999999999999988653
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-51 Score=360.50 Aligned_cols=253 Identities=49% Similarity=0.832 Sum_probs=233.9
Q ss_pred cccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhc
Q 024066 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEK 81 (273)
Q Consensus 2 l~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~ 81 (273)
+.+.|++.++|+.+++++||+||+|||++.++++++++++++.+.+ .++++|||+||++|++++++++.+.++
T Consensus 35 l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~--~~g~~vid~st~~p~~~~~~~~~~~~~----- 107 (288)
T TIGR01692 35 AVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV--AKGSLLIDCSTIDPDSARKLAELAAAH----- 107 (288)
T ss_pred HHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC--CCCCEEEECCCCCHHHHHHHHHHHHHc-----
Confidence 3456888899999999999999999999999999998877888764 467899999999999999999998764
Q ss_pred cCCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHH
Q 024066 82 KDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSE 161 (273)
Q Consensus 82 ~g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~E 161 (273)
|+.|+|+||+|++..++.|++++|+||+++.+++++|+|+.++++++|+|++|+|+++||++|++..+++++++|
T Consensus 108 -----g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~E 182 (288)
T TIGR01692 108 -----GAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAE 182 (288)
T ss_pred -----CCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHH
Q 024066 162 ALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQ 241 (273)
Q Consensus 162 a~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~~~~ 241 (273)
++.+++++|+|+++++++++.+.++||....+.+.++++...+.+++|+++|+++++.||++++.+++++.|+++|+.+.
T Consensus 183 a~~la~~~Gld~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~~p~~~~ 262 (288)
T TIGR01692 183 AMALGEKLGLDPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGGFGTALMLKDLGLAQDAAKSAGAPTPLGAL 262 (288)
T ss_pred HHHHHHHcCCCHHHHHHHHhcCCccCcHHHHhCCCccccccccccCCCCCCcchHHHHhhHHHHHHHHHHcCCCChHHHH
Confidence 99999999999999999999999999987766665555544456789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCcHHHHHHHH
Q 024066 242 AQDIYAKLCENGHDSKDFSCVFQHY 266 (273)
Q Consensus 242 ~~~~~~~a~~~G~g~~d~sai~~~~ 266 (273)
++++|+.+.++|+|++|++++++.+
T Consensus 263 ~~~~~~~a~~~g~g~~d~~~~~~~~ 287 (288)
T TIGR01692 263 ARQLYSLFDDKGHGGKDFSSVIQLL 287 (288)
T ss_pred HHHHHHHHHhcCCCCCChHHHHHHh
Confidence 9999999999999999999999876
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-49 Score=353.60 Aligned_cols=248 Identities=29% Similarity=0.428 Sum_probs=227.6
Q ss_pred ccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhcc
Q 024066 3 SDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 82 (273)
Q Consensus 3 ~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~ 82 (273)
.+.|++.+.|+.|++++||+||+|||++.++++++.+.+++++.+ +++++|||+||++|.+++++++++.++
T Consensus 41 ~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i~~~l--~~g~lvid~sT~~p~~~~~l~~~l~~~------ 112 (296)
T PRK15461 41 VDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGVCEGL--SRDALVIDMSTIHPLQTDKLIADMQAK------ 112 (296)
T ss_pred HHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccHhhcC--CCCCEEEECCCCCHHHHHHHHHHHHHc------
Confidence 456888899999999999999999999999999998877887763 467899999999999999999999864
Q ss_pred CCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHH
Q 024066 83 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEA 162 (273)
Q Consensus 83 g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~Ea 162 (273)
|+.|+|+||+|++..++.|++++|+||++++|++++|+|+.|+++++|+|++|+|+++||++|++...++++++|+
T Consensus 113 ----g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~l~~~g~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea 188 (296)
T PRK15461 113 ----GFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPILMAMGNELINAGGPGMGIRVKLINNYMSIALNALSAEA 188 (296)
T ss_pred ----CCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHHHHHHcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHH
Q 024066 163 LTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQA 242 (273)
Q Consensus 163 ~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~~~~~ 242 (273)
+.+++++|||++.++++++.++..++.+..+. + +++.+++|+++|+++++.||++++++++++.|+++|+++.+
T Consensus 189 ~~l~~~~Gld~~~~~~~l~~~~~~~~~~~~~~--~----~~~~~~~~~~~f~~~~~~KD~~l~~~~a~~~g~~~p~~~~~ 262 (296)
T PRK15461 189 AVLCEALGLSFDVALKVMSGTAAGKGHFTTTW--P----NKVLKGDLSPAFMIDLAHKDLGIALDVANQLHVPMPLGAAS 262 (296)
T ss_pred HHHHHHcCCCHHHHHHHHhcCcccChHHHccc--c----chhccCCCCCCcchHHHHhhHHHHHHHHHHcCCCChHHHHH
Confidence 99999999999999999998876666544322 1 13567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHhc
Q 024066 243 QDIYAKLCENGHDSKDFSCVFQHYYG 268 (273)
Q Consensus 243 ~~~~~~a~~~G~g~~d~sai~~~~~~ 268 (273)
+++|+.+.++|+|++||+++++.+++
T Consensus 263 ~~~~~~a~~~g~g~~d~~~~~~~~~~ 288 (296)
T PRK15461 263 REVYSQARAAGRGRQDWSAILEQVRV 288 (296)
T ss_pred HHHHHHHHhcCCCCCChHHHHHHHHH
Confidence 99999999999999999999998865
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-48 Score=396.00 Aligned_cols=250 Identities=21% Similarity=0.345 Sum_probs=233.0
Q ss_pred cccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhc
Q 024066 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEK 81 (273)
Q Consensus 2 l~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~ 81 (273)
|.+.|+++++||+|++++||+||+|||+++++++|+++.+|+++++ .+|++||||||++|++++++++.+.++|
T Consensus 43 l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g~~~~l--~~g~iivd~STi~p~~~~~la~~l~~~g---- 116 (1378)
T PLN02858 43 FCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEGAAKGL--QKGAVILIRSTILPLQLQKLEKKLTERK---- 116 (1378)
T ss_pred HHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhhHHhcC--CCcCEEEECCCCCHHHHHHHHHHHHhcC----
Confidence 5678999999999999999999999999999999999988999874 4678999999999999999999998741
Q ss_pred cCCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEe-CCcChHHHHHHHHHHHHHHHHHHHH
Q 024066 82 KDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYC-GGAGNGAAAKICNNLTMAVSMLGVS 160 (273)
Q Consensus 82 ~g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~-G~~g~a~~~Kl~~n~~~~~~~~~~~ 160 (273)
+ ++.|+|+||+|++..|++|+|++|+||+++++++++|+|+.||++++|+ |++|+|+++||+||++.++++++++
T Consensus 117 -~---~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~a 192 (1378)
T PLN02858 117 -E---QIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASA 192 (1378)
T ss_pred -C---ceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHH
Confidence 1 2789999999999999999999999999999999999999999999875 8899999999999999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHH
Q 024066 161 EALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTS 240 (273)
Q Consensus 161 Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~~~ 240 (273)
|++.+++++|||++.++++|+.++++||+++.+.| ++.+++|+++|+++++.||+++++++|++.|+++|+++
T Consensus 193 EAl~la~~~Gld~~~l~~vl~~s~g~s~~~~~~~~-------~~~~~d~~~~F~l~l~~KDl~la~~~A~~~g~~lpl~~ 265 (1378)
T PLN02858 193 EAMALGVRAGIHPWIIYDIISNAAGSSWIFKNHVP-------LLLKDDYIEGRFLNVLVQNLGIVLDMAKSLPFPLPLLA 265 (1378)
T ss_pred HHHHHHHHcCCCHHHHHHHHhcCCccCHHHHhhhh-------HhhcCCCCCCchhHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 99999999999999999999999999998775543 35678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCcHHHHHHHHhc
Q 024066 241 QAQDIYAKLCENGHDSKDFSCVFQHYYG 268 (273)
Q Consensus 241 ~~~~~~~~a~~~G~g~~d~sai~~~~~~ 268 (273)
.++++|+.+.+.|+|++|++++++.+++
T Consensus 266 ~a~~~~~~a~~~G~g~~D~sav~~~~~~ 293 (1378)
T PLN02858 266 VAHQQLISGSSSMQGDDTATSLAKVWEK 293 (1378)
T ss_pred HHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 9999999999999999999999998865
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=378.76 Aligned_cols=250 Identities=25% Similarity=0.392 Sum_probs=230.7
Q ss_pred cccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhc
Q 024066 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEK 81 (273)
Q Consensus 2 l~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~ 81 (273)
|.+.|+..++|+++++++||+||+|||+++++++|+++..|+++.+ ..|++|||+||++|++++++++++++.|
T Consensus 363 l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l--~~g~ivVd~STvsP~~~~~la~~l~~~g---- 436 (1378)
T PLN02858 363 FENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLGAVSAL--PAGASIVLSSTVSPGFVIQLERRLENEG---- 436 (1378)
T ss_pred HHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhhHHhcC--CCCCEEEECCCCCHHHHHHHHHHHHhhC----
Confidence 4567888899999999999999999999999999999888888774 4678999999999999999999997621
Q ss_pred cCCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEe-CCcChHHHHHHHHHHHHHHHHHHHH
Q 024066 82 KDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYC-GGAGNGAAAKICNNLTMAVSMLGVS 160 (273)
Q Consensus 82 ~g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~-G~~g~a~~~Kl~~n~~~~~~~~~~~ 160 (273)
. |+.|+|+||+|+|..++.|++++|+||++++|++++|+|+.|+++++|+ |++|+|+++||+||++...++++++
T Consensus 437 ~----g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~a 512 (1378)
T PLN02858 437 R----DIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAA 512 (1378)
T ss_pred C----CcEEEEccCCCChhhhhcCCceEEEECCHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1 4899999999999999999999999999999999999999999999886 5699999999999999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHH
Q 024066 161 EALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTS 240 (273)
Q Consensus 161 Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~~~ 240 (273)
|++.+++++|||+++++++++.++++||+++.+.| ++.+++|+++|+++++.||++++++++++.|+++|+++
T Consensus 513 Eal~la~k~Gld~~~l~evl~~s~g~s~~~~~~~~-------~~l~~d~~~~f~l~l~~KDl~l~~~~a~~~g~~~pl~~ 585 (1378)
T PLN02858 513 EAMAFGARLGLNTRKLFDIISNAGGTSWMFENRVP-------HMLDNDYTPYSALDIFVKDLGIVSREGSSRKIPLHLST 585 (1378)
T ss_pred HHHHHHHHcCCCHHHHHHHHHhhcccChhhhhccc-------hhhcCCCCCCchhHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 99999999999999999999999999998765533 35578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCcHHHHHHHHhc
Q 024066 241 QAQDIYAKLCENGHDSKDFSCVFQHYYG 268 (273)
Q Consensus 241 ~~~~~~~~a~~~G~g~~d~sai~~~~~~ 268 (273)
.++++|+.+.++|+|++|++++++.+++
T Consensus 586 ~~~~~~~~a~~~G~g~~D~sav~~~~~~ 613 (1378)
T PLN02858 586 VAHQLFLAGSASGWGRIDDAAVVKVYET 613 (1378)
T ss_pred HHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 9999999999999999999999998864
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=320.29 Aligned_cols=248 Identities=36% Similarity=0.535 Sum_probs=227.1
Q ss_pred ccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhcc
Q 024066 3 SDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 82 (273)
Q Consensus 3 ~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~ 82 (273)
.+.|+..++|+.+++++||+||+|||++.++++++++..++++.+ +++++|||+||++|.+++++.+.+.++
T Consensus 39 ~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~~~~--~~g~iivd~st~~~~~~~~l~~~l~~~------ 110 (291)
T TIGR01505 39 LAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGIIEGA--KPGKTLVDMSSISPIESKRFAKAVKEK------ 110 (291)
T ss_pred HHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHhhcC--CCCCEEEECCCCCHHHHHHHHHHHHHc------
Confidence 456888889999999999999999999999999987766676653 457899999999999999999998763
Q ss_pred CCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHH
Q 024066 83 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEA 162 (273)
Q Consensus 83 g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~Ea 162 (273)
|++|+|+||+|++..+..|++.+|+||+++++++++++|+.++.+++|+|+.|.|+.+|+++|++...++.+++|+
T Consensus 111 ----g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea 186 (291)
T TIGR01505 111 ----GIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEA 186 (291)
T ss_pred ----CCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHH
Q 024066 163 LTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQA 242 (273)
Q Consensus 163 ~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~~~~~ 242 (273)
+.+++++|+|++++.++++.+.++||.++.+.+ ++.+++|+++|+++++.||++++++++++.|+++|+++.+
T Consensus 187 ~~l~~~~Gid~~~~~~~l~~~~~~s~~~~~~~~-------~~~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~~~~~~~~ 259 (291)
T TIGR01505 187 LVFASKAGVDPVRVRQALRGGLAGSTVLEVKGE-------RVIDRTFKPGFRIDLHQKDLNLALDSAKAVGANLPNTATV 259 (291)
T ss_pred HHHHHHcCCCHHHHHHHHhcCcccCHHHHhhCh-------hhhcCCCCCCcchHHHHHHHHHHHHHHHHcCCCChhHHHH
Confidence 999999999999999999998888887665432 3457899999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHhcC
Q 024066 243 QDIYAKLCENGHDSKDFSCVFQHYYGG 269 (273)
Q Consensus 243 ~~~~~~a~~~G~g~~d~sai~~~~~~~ 269 (273)
+++|+.+.+.|+|++|++++++.+++.
T Consensus 260 ~~~~~~a~~~g~~~~d~~~~~~~~~~~ 286 (291)
T TIGR01505 260 QELFNTLRANGGGQLDHSALVQALELL 286 (291)
T ss_pred HHHHHHHHhcCCCccChHHHHHHHHHh
Confidence 999999999999999999999988653
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=320.79 Aligned_cols=247 Identities=34% Similarity=0.494 Sum_probs=226.8
Q ss_pred ccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhcc
Q 024066 3 SDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 82 (273)
Q Consensus 3 ~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~ 82 (273)
.+.|++.++++.|++++||+||+|+|++.++++++++.+++++.+ .++++|||+||++|.+++++++.+.++
T Consensus 42 ~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~~~~~--~~g~iiid~st~~~~~~~~l~~~~~~~------ 113 (296)
T PRK11559 42 IAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGIIEGA--KPGTVVIDMSSIAPLASREIAAALKAK------ 113 (296)
T ss_pred HHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchHhhcC--CCCcEEEECCCCCHHHHHHHHHHHHHc------
Confidence 346788889999999999999999999999999987766677663 467899999999999999999998763
Q ss_pred CCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHH
Q 024066 83 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEA 162 (273)
Q Consensus 83 g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~Ea 162 (273)
|++|+|+||+|+++.+..|++.+|+||+++++++++++|+.++.+++|+|+.|+|+.+|+++|++..+++++++|+
T Consensus 114 ----g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea 189 (296)
T PRK11559 114 ----GIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEA 189 (296)
T ss_pred ----CCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHH
Q 024066 163 LTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQA 242 (273)
Q Consensus 163 ~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~~~~~ 242 (273)
+.++++.|++++++.+++..+.++|+.++.+.+ ++..++|+++|+++++.||++++++++++.|+++|+++.+
T Consensus 190 ~~l~~~~Gi~~~~~~~~l~~~~~~s~~~~~~~~-------~~~~~d~~~~f~~~~~~KDl~~~~~~a~~~g~~~p~~~~~ 262 (296)
T PRK11559 190 LVLATKAGVNPDLVYQAIRGGLAGSTVLDAKAP-------MVMDRNFKPGFRIDLHIKDLANALDTSHGVGAPLPLTAAV 262 (296)
T ss_pred HHHHHHcCCCHHHHHHHHhcCcccCHHHHhhch-------HhhcCCCCCCcchHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 999999999999999999998888887765433 2456899999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHhc
Q 024066 243 QDIYAKLCENGHDSKDFSCVFQHYYG 268 (273)
Q Consensus 243 ~~~~~~a~~~G~g~~d~sai~~~~~~ 268 (273)
.++|+.+.+.|||++||+++++++++
T Consensus 263 ~~~~~~~~~~g~~~~d~~~~~~~~~~ 288 (296)
T PRK11559 263 MEMMQALKADGLGTADHSALACYYEK 288 (296)
T ss_pred HHHHHHHHhcCCCcCCcHHHHHHHHH
Confidence 99999999999999999999998865
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=298.79 Aligned_cols=240 Identities=18% Similarity=0.241 Sum_probs=212.4
Q ss_pred ccCCCCCCCCHHHHHhc---CCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhh
Q 024066 3 SDMGVPTKETPFEVAEA---SDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILK 79 (273)
Q Consensus 3 ~~~Ga~~~~s~~e~~~~---advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~ 79 (273)
.+.|++.++|+.|++++ +|+||+|||+++++++++. ++.+.+ .+|++|||+||++|.+++++++.+.++
T Consensus 40 ~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~---~i~~~l--~~g~ivid~st~~~~~~~~~~~~~~~~--- 111 (299)
T PRK12490 40 GKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIK---DLYPLL--SPGDIVVDGGNSRYKDDLRRAEELAER--- 111 (299)
T ss_pred HHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHH---HHhccC--CCCCEEEECCCCCchhHHHHHHHHHHc---
Confidence 45688999999999887 6999999999999999985 466553 456899999999999999999998764
Q ss_pred hccCCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcC---CeEEeCCcChHHHHHHHHHHHHHHHH
Q 024066 80 EKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGK---NTIYCGGAGNGAAAKICNNLTMAVSM 156 (273)
Q Consensus 80 ~~~g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~---~i~~~G~~g~a~~~Kl~~n~~~~~~~ 156 (273)
|+.|+|+||+|++..++.|+ ++|+||++++|++++|+|+.++. +++|+|++|+|+.+||++|++..+++
T Consensus 112 -------g~~~vdapV~G~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~ 183 (299)
T PRK12490 112 -------GIHYVDCGTSGGVWGLRNGY-CLMVGGDKEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMVHNGIEYGMM 183 (299)
T ss_pred -------CCeEEeCCCCCCHHHHhcCC-eEEecCCHHHHHHHHHHHHHhcCcCCcEEEECCcCHHHHHHHHHHHHHHHHH
Confidence 38999999999999999998 89999999999999999999997 79999999999999999999999999
Q ss_pred HHHHHHHHHHHHcC--CCHHHHHHHHhhc-CCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHH---HHHHHHHH
Q 024066 157 LGVSEALTLGQSLG--ISASTLTKILNSS-SARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDL---NLALASAK 230 (273)
Q Consensus 157 ~~~~Ea~~la~~~G--l~~~~~~~~l~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~---~~~~~~a~ 230 (273)
++++|++.++++.| +|+++++++++.+ .++||+++.+.+ .+..+++ .|.++.+.||+ ++++++++
T Consensus 184 ~~~aEa~~l~~~~g~~ld~~~~~~~~~~~~~~~s~~l~~~~~-------~~~~~~~--~~~l~~~~KD~~~~~l~~~~A~ 254 (299)
T PRK12490 184 QAYAEGLELLDKSDFDFDVEDVARLWRNGSVIRSWLLDLTVK-------ALAEDPK--LAGIKGYVNDSGEGRWTVEEAI 254 (299)
T ss_pred HHHHHHHHHHHHcccCCCHHHHHHHHcCCcHHHHHHHHHHHH-------HHhhCCC--hhhhhHHHHhcCcHHHHHHHHH
Confidence 99999999999999 9999999999964 488887765433 1223333 36789999998 89999999
Q ss_pred HhCCCChHHHHHH-HHHHHHHHCCCCCCcHHHHHHHHh
Q 024066 231 EVGVDCPLTSQAQ-DIYAKLCENGHDSKDFSCVFQHYY 267 (273)
Q Consensus 231 ~~g~~~~~~~~~~-~~~~~a~~~G~g~~d~sai~~~~~ 267 (273)
+.|+|+|++..++ .+|....++|.|+.|++++.+++-
T Consensus 255 ~~g~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f~ 292 (299)
T PRK12490 255 ELAVAAPVIAASLFMRFASQEDDSFHMKVVSALRNQFG 292 (299)
T ss_pred HcCCCHHHHHHHHHHHHHhCccCChHHHHHHHHHHhhC
Confidence 9999999999996 999999999999999999988764
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-40 Score=305.42 Aligned_cols=223 Identities=19% Similarity=0.231 Sum_probs=197.9
Q ss_pred CCC---CCCCHHHHHhc---CCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhh
Q 024066 6 GVP---TKETPFEVAEA---SDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILK 79 (273)
Q Consensus 6 Ga~---~~~s~~e~~~~---advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~ 79 (273)
|++ .++|++|+++. +|+||+||++++++++|+. ++++.+ .+|++|||+||++|.++++++++++++
T Consensus 53 Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~~Vi~---gl~~~l--~~G~iiID~sT~~~~~t~~~~~~l~~~--- 124 (493)
T PLN02350 53 GNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVDQTIK---ALSEYM--EPGDCIIDGGNEWYENTERRIKEAAEK--- 124 (493)
T ss_pred CCcccccCCCHHHHHhcCCCCCEEEEECCCcHHHHHHHH---HHHhhc--CCCCEEEECCCCCHHHHHHHHHHHHHc---
Confidence 654 78999999987 9999999999999999984 577764 467899999999999999999999864
Q ss_pred hccCCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcC------CeEEeCCcChHHHHHHHHHHHHH
Q 024066 80 EKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGK------NTIYCGGAGNGAAAKICNNLTMA 153 (273)
Q Consensus 80 ~~~g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~------~i~~~G~~g~a~~~Kl~~n~~~~ 153 (273)
|++|+|+||+||+.+|+.|+ ++|+||++++|++++|+|+.++. +++|+|++|+|+.+||++|.+.+
T Consensus 125 -------Gi~fldapVSGG~~gA~~G~-~im~GG~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~ 196 (493)
T PLN02350 125 -------GLLYLGMGVSGGEEGARNGP-SLMPGGSFEAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEY 196 (493)
T ss_pred -------CCeEEeCCCcCCHHHhcCCC-eEEecCCHHHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 38999999999999999999 99999999999999999999995 49999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-cCCCHHHHHHH---HhhcCCcccccccCCCCCCcccCCCCCC-CCCCCcchhhHHHHHH-----
Q 024066 154 VSMLGVSEALTLGQS-LGISASTLTKI---LNSSSARCWSSDSYNPVPGVMEGVPASR-NYGGGFASKLMAKDLN----- 223 (273)
Q Consensus 154 ~~~~~~~Ea~~la~~-~Gl~~~~~~~~---l~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~~f~~~~~~KD~~----- 223 (273)
+.+++++|++.++++ .|+|++++.++ ++.+.+.||+.+...+. +..+ +|.++|.++++.||++
T Consensus 197 ~~m~~iaEA~~l~~~~~Gld~~~l~~vf~~~~~g~~~S~llei~~~~-------l~~~d~~~~~f~l~~i~Kd~~~kGTg 269 (493)
T PLN02350 197 GDMQLISEAYDVLKSVGGLSNEELAEVFAEWNKGELESFLIEITADI-------FSVKDDKGDGYLVDKILDKTGMKGTG 269 (493)
T ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHcCCCccchHHHHHHHH-------HhhcCCCCCCchHHHHHhhhcccchH
Confidence 999999999999999 59999999998 56788888887755431 2233 4888899999999999
Q ss_pred -HHHHHHHHhCCCChH-HHHHHHHHHHHHH
Q 024066 224 -LALASAKEVGVDCPL-TSQAQDIYAKLCE 251 (273)
Q Consensus 224 -~~~~~a~~~g~~~~~-~~~~~~~~~~a~~ 251 (273)
++.+.+.+.|+|+|+ ..++.++|.+...
T Consensus 270 ~w~~~~A~~lgv~~p~i~~av~~r~~s~~k 299 (493)
T PLN02350 270 KWTVQQAAELSVAAPTIAASLDARYLSGLK 299 (493)
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHhccH
Confidence 999999999999999 7777788866543
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=280.34 Aligned_cols=239 Identities=17% Similarity=0.239 Sum_probs=206.3
Q ss_pred cccCCCCCCCCHHHHHhc---CCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchh
Q 024066 2 FSDMGVPTKETPFEVAEA---SDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCIL 78 (273)
Q Consensus 2 l~~~Ga~~~~s~~e~~~~---advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~ 78 (273)
+.+.|++.++|+.|+++. +|+||+|+|++.++++++. ++.+.+ .++++|||+||++|.+++++++.++++
T Consensus 39 ~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~---~l~~~l--~~g~ivid~st~~~~~~~~~~~~~~~~-- 111 (301)
T PRK09599 39 LAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATID---ELAPLL--SPGDIVIDGGNSYYKDDIRRAELLAEK-- 111 (301)
T ss_pred HHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHH---HHHhhC--CCCCEEEeCCCCChhHHHHHHHHHHHc--
Confidence 345789999999999886 6999999999989999884 465553 456899999999999999999998764
Q ss_pred hhccCCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcC----CeEEeCCcChHHHHHHHHHHHHHH
Q 024066 79 KEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGK----NTIYCGGAGNGAAAKICNNLTMAV 154 (273)
Q Consensus 79 ~~~~g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~----~i~~~G~~g~a~~~Kl~~n~~~~~ 154 (273)
|+.|+|+||+|++..++.|. ++|+||++++|++++|+|+.+++ +++|+|++|+|+.+|+++|++..+
T Consensus 112 --------g~~~~dapvsG~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~ 182 (301)
T PRK09599 112 --------GIHFVDVGTSGGVWGLERGY-CLMIGGDKEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHNGIEYG 182 (301)
T ss_pred --------CCEEEeCCCCcCHHHHhcCC-eEEecCCHHHHHHHHHHHHHHcccccCCeEeECCCcHHHHHHHHHHHHHHH
Confidence 38999999999999999996 99999999999999999999999 899999999999999999999999
Q ss_pred HHHHHHHHHHHHHH--cCCCHHHHHHHHhhcC-CcccccccCCCCCCcccCCCCCCCCCCCcc-hhhHHHH---HHHHHH
Q 024066 155 SMLGVSEALTLGQS--LGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVPASRNYGGGFA-SKLMAKD---LNLALA 227 (273)
Q Consensus 155 ~~~~~~Ea~~la~~--~Gl~~~~~~~~l~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~~~~KD---~~~~~~ 227 (273)
++.+++|++.++++ +|+|+++++++++.++ ++||+++.+.+ . + .++ +.|+ +..+.|| ++++++
T Consensus 183 ~~~~~aEa~~l~~~~~~gld~~~~~~~~~~~~~~~s~~l~~~~~---~----~-~~~--~~~~~~~~~~kd~~~~~~~~~ 252 (301)
T PRK09599 183 MMQAYAEGFELLEASRFDLDLAAVAEVWRRGSVIRSWLLDLTAD---A----L-AED--PKLDEISGYVEDSGEGRWTVE 252 (301)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCcHHHHHHHHHHHH---H----H-hcC--CCHHHHHHHHHhhCcHHHHHH
Confidence 99999999999999 9999999999999875 68887765432 1 1 222 2233 4445666 599999
Q ss_pred HHHHhCCCChHHHHHHH-HHHHHHHCCCCCCcHHHHHHHH
Q 024066 228 SAKEVGVDCPLTSQAQD-IYAKLCENGHDSKDFSCVFQHY 266 (273)
Q Consensus 228 ~a~~~g~~~~~~~~~~~-~~~~a~~~G~g~~d~sai~~~~ 266 (273)
.+.+.|+|+|++.++.. +|....+.|+|+.|.+++.+++
T Consensus 253 ~A~~~~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f 292 (301)
T PRK09599 253 EAIDLAVPAPVIAAALFMRFRSRQEDSFADKVVAALRNGF 292 (301)
T ss_pred HHHHcCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhc
Confidence 99999999999999664 5999999999999999998876
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=266.26 Aligned_cols=215 Identities=20% Similarity=0.259 Sum_probs=183.5
Q ss_pred CCCCCCCHHHHHhc---CCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhcc
Q 024066 6 GVPTKETPFEVAEA---SDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 82 (273)
Q Consensus 6 Ga~~~~s~~e~~~~---advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~ 82 (273)
|++.++|++|+++. +|+||+|||+++++++|+. ++++.+ .+|++|||+||++|..++++++.++++
T Consensus 38 g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~---~l~~~l--~~GdiiID~gn~~~~~t~~~~~~l~~~------ 106 (459)
T PRK09287 38 KIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIE---QLLPLL--EKGDIIIDGGNSNYKDTIRREKELAEK------ 106 (459)
T ss_pred CeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHH---HHHhcC--CCCCEEEECCCCCHHHHHHHHHHHHhc------
Confidence 68899999999985 8999999999999999994 577764 467899999999999999999999764
Q ss_pred CCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCe-------EEeCCcChHHHHHHHHHHHHHHH
Q 024066 83 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT-------IYCGGAGNGAAAKICNNLTMAVS 155 (273)
Q Consensus 83 g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i-------~~~G~~g~a~~~Kl~~n~~~~~~ 155 (273)
|++|+|+||+||+.+|+.|. ++|+||++++|++++|+|+.++.++ +|+|+.|+|+.+||++|.+.++.
T Consensus 107 ----Gi~fvdapVSGG~~gA~~G~-siM~GG~~~a~~~~~piL~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~ 181 (459)
T PRK09287 107 ----GIHFIGMGVSGGEEGALHGP-SIMPGGQKEAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGD 181 (459)
T ss_pred ----CCeEEecCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHHHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHH
Confidence 38999999999999999998 9999999999999999999999887 99999999999999999999999
Q ss_pred HHHHHHHHHHHH-HcCCCHHHHHHHH---hhcCCcccccccCCCCCCcccCCCCCCCCCCCcc-hhhHH------HHHHH
Q 024066 156 MLGVSEALTLGQ-SLGISASTLTKIL---NSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFA-SKLMA------KDLNL 224 (273)
Q Consensus 156 ~~~~~Ea~~la~-~~Gl~~~~~~~~l---~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~~~~------KD~~~ 224 (273)
+++++|++.+++ +.|++++++.+++ +.+.+.||+.+...+ .+..+||..+.. ++... -.-+.
T Consensus 182 mq~iaEa~~l~~~~~Gl~~~~l~~v~~~wn~g~~~S~l~ei~~~-------~l~~~d~~~~~~~~d~i~d~~~~~gtg~W 254 (459)
T PRK09287 182 MQLIAEAYDLLKDGLGLSAEEIADVFAEWNKGELNSYLIEITAD-------ILRQKDEETGKPLVDVILDKAGQKGTGKW 254 (459)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccChHHHhHhH-------HHhcCCCCCCCcchHHhcCcccCCcHHHH
Confidence 999999999999 5999999999998 577788888775543 233456533321 22221 12456
Q ss_pred HHHHHHHhCCCChHHHHHH
Q 024066 225 ALASAKEVGVDCPLTSQAQ 243 (273)
Q Consensus 225 ~~~~a~~~g~~~~~~~~~~ 243 (273)
....|-+.|+|.|++..+.
T Consensus 255 t~~~a~~~~v~~~~i~~Av 273 (459)
T PRK09287 255 TSQSALDLGVPLTLITEAV 273 (459)
T ss_pred HHHHHHHhCCChHHHHHHH
Confidence 7788999999999987764
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-32 Score=239.43 Aligned_cols=219 Identities=21% Similarity=0.312 Sum_probs=185.9
Q ss_pred cccCCCCCCCCHHHHHh---cCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchh
Q 024066 2 FSDMGVPTKETPFEVAE---ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCIL 78 (273)
Q Consensus 2 l~~~Ga~~~~s~~e~~~---~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~ 78 (273)
+.+.|+..+.|+.++++ ++|+||+|||++ ++++|+. ++.+.+ .++++|||+||+.|.+++++.+.++++
T Consensus 39 l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~~---~l~~~l--~~g~ivid~st~~~~~t~~~~~~~~~~-- 110 (298)
T TIGR00872 39 MKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVLE---ELAPTL--EKGDIVIDGGNSYYKDSLRRYKLLKEK-- 110 (298)
T ss_pred HHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHHH---HHHhhC--CCCCEEEECCCCCcccHHHHHHHHHhc--
Confidence 34567777888888664 589999999998 9999985 466553 456899999999999999999998763
Q ss_pred hhccCCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcC---CeEEeCCcChHHHHHHHHHHHHHHH
Q 024066 79 KEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGK---NTIYCGGAGNGAAAKICNNLTMAVS 155 (273)
Q Consensus 79 ~~~~g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~---~i~~~G~~g~a~~~Kl~~n~~~~~~ 155 (273)
|++|+|+||+|++.+++.| +++|+||++++|++++|+|+.++. .++|+|+.|+|+.+|+++|.+..+.
T Consensus 111 --------g~~~vda~vsGg~~~a~~G-~~~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~ 181 (298)
T TIGR00872 111 --------GIHLLDCGTSGGVWGRERG-YCFMIGGDGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGM 181 (298)
T ss_pred --------CCeEEecCCCCCHHHHhcC-CeeeeCCCHHHHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHH
Confidence 3899999999999999999 599999999999999999999996 5899999999999999999999999
Q ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHhhcC-CcccccccCCCCCCcccCCCCCCCCCCCcchh-hHHHHHHHHHHHHHH
Q 024066 156 MLGVSEALTLGQSL--GISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVPASRNYGGGFASK-LMAKDLNLALASAKE 231 (273)
Q Consensus 156 ~~~~~Ea~~la~~~--Gl~~~~~~~~l~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~KD~~~~~~~a~~ 231 (273)
+++++|++.++++. |+|++++.++++.++ .+||+++.+.+ . +..+++.+.|... ...+|.++++..+.+
T Consensus 182 ~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g~~~~s~~l~~~~~---~----~~~~~~~~~~~~~~~~~~~~r~~v~~a~~ 254 (298)
T TIGR00872 182 MAAIAEGFEILRNSQFDFDIPEVARVWRRGSVIRSWLLDLTAI---A----FRESPDLAEFSGRVSDSGEGRWTVIAAID 254 (298)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHcCCchhHhHHHHHHHH---H----HhcCCcHHHHHHHHHhhccHHHHHHHHHH
Confidence 99999999999998 579999999999986 58888765432 1 2233444456544 467889999999999
Q ss_pred hCCCChHHHHHHH
Q 024066 232 VGVDCPLTSQAQD 244 (273)
Q Consensus 232 ~g~~~~~~~~~~~ 244 (273)
.|+|+|.+..+..
T Consensus 255 ~g~p~P~~~~al~ 267 (298)
T TIGR00872 255 LGVPAPVIATSLQ 267 (298)
T ss_pred hCCCHHHHHHHHH
Confidence 9999999999653
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=242.52 Aligned_cols=219 Identities=19% Similarity=0.223 Sum_probs=179.5
Q ss_pred CCCCCCHHHHHh---cCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccC
Q 024066 7 VPTKETPFEVAE---ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKD 83 (273)
Q Consensus 7 a~~~~s~~e~~~---~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g 83 (273)
.+.++|++|+++ ++|+||+||++++++++|+. ++++.+ .+|++|||+||+.|..++++.+++.++
T Consensus 51 i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~~vi~---~l~~~L--~~g~iIID~gn~~~~dt~~r~~~l~~~------- 118 (470)
T PTZ00142 51 VKGYHTLEELVNSLKKPRKVILLIKAGEAVDETID---NLLPLL--EKGDIIIDGGNEWYLNTERRIKRCEEK------- 118 (470)
T ss_pred ceecCCHHHHHhcCCCCCEEEEEeCChHHHHHHHH---HHHhhC--CCCCEEEECCCCCHHHHHHHHHHHHHc-------
Confidence 346889999997 48999999999999999985 466654 467899999999999999999999864
Q ss_pred CCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCC------eEEeCCcChHHHHHHHHHHHHHHHHH
Q 024066 84 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKN------TIYCGGAGNGAAAKICNNLTMAVSML 157 (273)
Q Consensus 84 ~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~------i~~~G~~g~a~~~Kl~~n~~~~~~~~ 157 (273)
|++|+|+||+||+.+|++|+ ++|+||++++|++++|+|+.++.+ ++|+|+.|+|+.+||++|.+.++.++
T Consensus 119 ---Gi~fldapVSGG~~gA~~G~-~lm~GG~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~ 194 (470)
T PTZ00142 119 ---GILYLGMGVSGGEEGARYGP-SLMPGGNKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQ 194 (470)
T ss_pred ---CCeEEcCCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHH
Confidence 38999999999999999999 899999999999999999999987 89999999999999999999999999
Q ss_pred HHHHHHHHHH-HcCCCHHHHHHHH---hhcCCcccccccCCCCCCcccCCCCCCCCCC-CcchhhH------HHHHHHHH
Q 024066 158 GVSEALTLGQ-SLGISASTLTKIL---NSSSARCWSSDSYNPVPGVMEGVPASRNYGG-GFASKLM------AKDLNLAL 226 (273)
Q Consensus 158 ~~~Ea~~la~-~~Gl~~~~~~~~l---~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~f~~~~~------~KD~~~~~ 226 (273)
+++|++.+++ +.|++++++.+++ +.+..+||+.+..... +. ..|-.. ..-++.. .-.-+...
T Consensus 195 ~iaEa~~l~~~~~gl~~~~l~~v~~~w~~g~~~S~l~ei~~~~---~~----~~d~~~~~~~l~~i~d~~~~~gtg~wt~ 267 (470)
T PTZ00142 195 LISESYKLMKHILGMSNEELSEVFNKWNEGILNSYLIEITAKI---LA----KKDDLGEEHLVDKILDIAGSKGTGKWTV 267 (470)
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHcCCCccCHHHHHHHHH---hh----cccccCCCcchhhhcCcccCCchHHhHH
Confidence 9999999998 7999999999988 4777888877654322 11 111010 1112211 12245677
Q ss_pred HHHHHhCCCChHHHHHH-HHHHH
Q 024066 227 ASAKEVGVDCPLTSQAQ-DIYAK 248 (273)
Q Consensus 227 ~~a~~~g~~~~~~~~~~-~~~~~ 248 (273)
..|-+.|+|.|.+..+. .++..
T Consensus 268 ~~a~~~~v~~p~i~~a~~~R~~S 290 (470)
T PTZ00142 268 QEALERGIPVPTMAASVDARNIS 290 (470)
T ss_pred HHHHHcCCCchHHHHHHHHHHhh
Confidence 88999999999998876 45443
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=241.80 Aligned_cols=218 Identities=19% Similarity=0.252 Sum_probs=177.9
Q ss_pred CCCCCCHHHHHh---cCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccC
Q 024066 7 VPTKETPFEVAE---ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKD 83 (273)
Q Consensus 7 a~~~~s~~e~~~---~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g 83 (273)
+..++|++++++ ++|+||+|||++.++++|+. ++++.+ .+|++|||+||+.|.+++++.+.+.++
T Consensus 48 ~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~Vi~---~l~~~L--~~g~iIID~gns~~~~t~~~~~~l~~~------- 115 (467)
T TIGR00873 48 IVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAVIN---QLLPLL--EKGDIIIDGGNSHYPDTERRYKELKAK------- 115 (467)
T ss_pred ceecCCHHHHHhhcCCCCEEEEECCCcHHHHHHHH---HHHhhC--CCCCEEEECCCcCHHHHHHHHHHHHhc-------
Confidence 667889999885 58999999999999999985 466653 467899999999999999999988763
Q ss_pred CCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCC------eEEeCCcChHHHHHHHHHHHHHHHHH
Q 024066 84 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKN------TIYCGGAGNGAAAKICNNLTMAVSML 157 (273)
Q Consensus 84 ~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~------i~~~G~~g~a~~~Kl~~n~~~~~~~~ 157 (273)
|++|+|+||+||+.+|+.|. ++|+||++++|++++|+|+.++.+ ++|+|+.|+|+.+||++|.+.+++++
T Consensus 116 ---gi~fvdapVsGG~~gA~~G~-~im~GG~~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~ 191 (467)
T TIGR00873 116 ---GILFVGSGVSGGEEGARKGP-SIMPGGSAEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQ 191 (467)
T ss_pred ---CCEEEcCCCCCCHHHHhcCC-cCCCCCCHHHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999998 999999999999999999999987 48999999999999999999999999
Q ss_pred HHHHHHHHHH-HcCCCHHHHHHHH---hhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhH------HHHHHHHHH
Q 024066 158 GVSEALTLGQ-SLGISASTLTKIL---NSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLM------AKDLNLALA 227 (273)
Q Consensus 158 ~~~Ea~~la~-~~Gl~~~~~~~~l---~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~------~KD~~~~~~ 227 (273)
+++|++.+++ +.|++++++.+++ +.+.++||+.+...+.. ..+|-....=++.. .-.-+....
T Consensus 192 ~~aEa~~ll~~~~g~~~~~l~~v~~~w~~~~~~S~l~~~~~~~~-------~~~d~~~~~~l~~i~~~~~~~gtg~wt~~ 264 (467)
T TIGR00873 192 LICEAYDILKDGLGLSNEEIAEVFTEWNNGELDSYLIEITADIL-------KKKDEDGKPLVDKILDTAGQKGTGKWTAI 264 (467)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHhcCCcccchHHHhHHHHH-------hccCCCCCccHHhhcCcccCccHHHHHHH
Confidence 9999999985 7999999999999 67778888877554321 11111101111111 122456778
Q ss_pred HHHHhCCCChHHHHHH-HHHH
Q 024066 228 SAKEVGVDCPLTSQAQ-DIYA 247 (273)
Q Consensus 228 ~a~~~g~~~~~~~~~~-~~~~ 247 (273)
.|-+.|+|.|.+..+. .++.
T Consensus 265 ~a~~~~v~~p~i~~av~~R~~ 285 (467)
T TIGR00873 265 SALDLGVPVTLITESVFARYL 285 (467)
T ss_pred HHHHcCCCchHHHHHHHHHhc
Confidence 8999999999988765 4443
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=228.10 Aligned_cols=212 Identities=16% Similarity=0.165 Sum_probs=178.6
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHH---------HHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhch
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSH---------VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCI 77 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~a---------v~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g 77 (273)
++.++++.+++++||+||+|||++.+ +.+++. ++.+.+ .++++||++||++|++++++.+.+.++
T Consensus 64 l~~~~~~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~---~i~~~l--~~g~lvi~~STv~pgt~~~l~~~~~~~- 137 (411)
T TIGR03026 64 LRATTDYEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAE---TIAKHL--RKGATVVLESTVPPGTTEEVVKPILER- 137 (411)
T ss_pred eEEECCHHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHH---HHHHhc--CCCCEEEEeCcCCCCchHHHHHHHHHh-
Confidence 56778899999999999999999853 555553 465553 456899999999999999998766542
Q ss_pred hhhccCCCCCc-eEEEecCCCCHHHHhcCce--------EEEeecCHHHHHHHHHHHHHhc-CCeEEeCCcChHHHHHHH
Q 024066 78 LKEKKDSWENP-VMLDAPVSGGVLAAEAGTL--------TFMVGGSEDAYQAAKPLFLSMG-KNTIYCGGAGNGAAAKIC 147 (273)
Q Consensus 78 ~~~~~g~~~g~-~~ldapv~G~~~~a~~g~l--------~~~vgG~~~~~~~~~~~l~~~~-~~i~~~G~~g~a~~~Kl~ 147 (273)
..| . .++|+||+++|..+..|++ .+++|++++.+++++++|+.++ ..++++|++++|+.+|++
T Consensus 138 ---~~g----~~~~~d~~v~~~Pe~~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~ 210 (411)
T TIGR03026 138 ---ASG----LKLGEDFYLAYNPEFLREGNAVHDLLNPDRIVGGETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLA 210 (411)
T ss_pred ---hcC----CCCCCCceEEECCCcCCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHH
Confidence 111 2 2678999999999999997 8999999999999999999998 578999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCC--cchhhHHHHHHHH
Q 024066 148 NNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG--FASKLMAKDLNLA 225 (273)
Q Consensus 148 ~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--f~~~~~~KD~~~~ 225 (273)
+|++...++++++|++.+|++.|+|+++++++++.+. ++..++|.|+ |...++.||++++
T Consensus 211 ~N~~~a~~ia~~nE~~~la~~~GiD~~~v~~~~~~~~------------------~i~~~~~~pg~g~gg~c~~KD~~~l 272 (411)
T TIGR03026 211 ENTFRAVKIAFANELARICEALGIDVYEVIEAAGTDP------------------RIGFNFLNPGPGVGGHCIPKDPLAL 272 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCC------------------CCCCCcCCCCCCCCCCchhhhHHHH
Confidence 9999999999999999999999999999999997541 1223566665 5678899999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHH
Q 024066 226 LASAKEVGVDCPLTSQAQDIYAKL 249 (273)
Q Consensus 226 ~~~a~~~g~~~~~~~~~~~~~~~a 249 (273)
++.+++.|+++|+++++++..+.-
T Consensus 273 ~~~a~~~g~~~~l~~~~~~~N~~~ 296 (411)
T TIGR03026 273 IYKAKELGYNPELIEAAREINDSQ 296 (411)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHh
Confidence 999999999999999998766543
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.7e-28 Score=196.73 Aligned_cols=123 Identities=41% Similarity=0.643 Sum_probs=108.0
Q ss_pred cccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhc
Q 024066 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEK 81 (273)
Q Consensus 2 l~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~ 81 (273)
|.+.|++.++|++|++++||+||+|||+++++++++++++ +++++ .+|++|||+||++|++++++++.++++
T Consensus 40 ~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~-i~~~l--~~g~iiid~sT~~p~~~~~~~~~~~~~----- 111 (163)
T PF03446_consen 40 LAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGEN-ILAGL--RPGKIIIDMSTISPETSRELAERLAAK----- 111 (163)
T ss_dssp HHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTT-HGGGS---TTEEEEE-SS--HHHHHHHHHHHHHT-----
T ss_pred hHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhH-Hhhcc--ccceEEEecCCcchhhhhhhhhhhhhc-----
Confidence 4567999999999999999999999999999999999877 88874 578999999999999999999999864
Q ss_pred cCCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEE-eCC
Q 024066 82 KDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIY-CGG 137 (273)
Q Consensus 82 ~g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~-~G~ 137 (273)
|++|+|+||+|+++.+++|++++|+||++++|++++|+|+.|+.+++| +||
T Consensus 112 -----g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l~~~~~~v~~~~G~ 163 (163)
T PF03446_consen 112 -----GVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLLEAMGKNVYHYVGP 163 (163)
T ss_dssp -----TEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHHHHHEEEEEEE-ES
T ss_pred -----cceeeeeeeecccccccccceEEEccCCHHHHHHHHHHHHHHhCCceeeeCc
Confidence 389999999999999999999999999999999999999999999995 486
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.5e-26 Score=176.79 Aligned_cols=122 Identities=34% Similarity=0.576 Sum_probs=109.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhH
Q 024066 139 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLM 218 (273)
Q Consensus 139 g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 218 (273)
|+|+++|+++|++..+++.+++|++.++++.|||+++++++++.++++||.++.+.| . .+..++|+|+|+++++
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~~--~----~~~~~~~~~~f~l~~~ 74 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKNRAP--R----MILNGDFDPGFSLDLA 74 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHHHHH--H----HHHTTTTCSSSBHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHhhhh--h----hhhcccCCccchhHhh
Confidence 789999999999999999999999999999999999999999999999998765532 1 2457899999999999
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHH
Q 024066 219 AKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 266 (273)
Q Consensus 219 ~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~G~g~~d~sai~~~~ 266 (273)
.||++++++++++.|+|+|+.+.++++|+.+.++|+|++|+++++++|
T Consensus 75 ~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sai~~~~ 122 (122)
T PF14833_consen 75 RKDLRLALDLAKEAGVPLPLGSAARQLYQAAKAQGGGDEDFSAIYKLL 122 (122)
T ss_dssp HHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHTTTTTSBGGGGHHHH
T ss_pred ccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHhHC
Confidence 999999999999999999999999999999999999999999999975
|
... |
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-24 Score=201.66 Aligned_cols=213 Identities=11% Similarity=0.124 Sum_probs=167.3
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCCh------HHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhh
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSS------SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILK 79 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~------~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~ 79 (273)
|...+++..+++++||++|+|||+| .+++.|+.+.+++.+++ ++|++||++||+.|.+++++.+...++
T Consensus 63 g~l~~t~~~~~~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l--~~g~lVI~~STv~pgtt~~~~~~~l~~--- 137 (425)
T PRK15182 63 RYLKFTSEIEKIKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVL--NRGDIVVYESTVYPGCTEEECVPILAR--- 137 (425)
T ss_pred CCeeEEeCHHHHcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhc--CCCCEEEEecCCCCcchHHHHHHHHHh---
Confidence 3335667677899999999999999 45577777667788774 467899999999999999876665432
Q ss_pred hccCCCCCceEEE--------ecCCCCHHHHhcCceEEEeec-CHHHHHHHHHHHHHhc-CCeEEeCCcChHHHHHHHHH
Q 024066 80 EKKDSWENPVMLD--------APVSGGVLAAEAGTLTFMVGG-SEDAYQAAKPLFLSMG-KNTIYCGGAGNGAAAKICNN 149 (273)
Q Consensus 80 ~~~g~~~g~~~ld--------apv~G~~~~a~~g~l~~~vgG-~~~~~~~~~~~l~~~~-~~i~~~G~~g~a~~~Kl~~n 149 (273)
.. |..+.| .|+.+|.......++..+++| +++..++++++++.+. ..+++++++++|+.+|+++|
T Consensus 138 -~~----g~~~~~~~~~~~~PE~v~~G~a~~~~~~~~riv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N 212 (425)
T PRK15182 138 -MS----GMTFNQDFYVGYSPERINPGDKKHRLTNIKKITSGSTAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIEN 212 (425)
T ss_pred -cc----CCCcCCCeeEeeCCCcCCCCcccccccCCCeEEECCCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHH
Confidence 11 133444 346666666666666655555 6678899999999987 35788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCC-cchhhHHHHHHHHHHH
Q 024066 150 LTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG-FASKLMAKDLNLALAS 228 (273)
Q Consensus 150 ~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-f~~~~~~KD~~~~~~~ 228 (273)
++...++++++|++.+|++.|+|.+++++++... |.+. .+.|+ |...|+.||...++..
T Consensus 213 ~~~av~Ia~~NE~a~lae~~GiD~~~v~~a~~~~----~~~~----------------~~~pG~vGG~ClpkD~~~L~~~ 272 (425)
T PRK15182 213 TQRDLNIALVNELAIIFNRLNIDTEAVLRAAGSK----WNFL----------------PFRPGLVGGHCIGVDPYYLTHK 272 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhcCC----CCcc----------------cCCCCccccccccccHHHHHHH
Confidence 9999999999999999999999999999996543 2111 12344 7778999999999999
Q ss_pred HHHhCCCChHHHHHHHHHHH
Q 024066 229 AKEVGVDCPLTSQAQDIYAK 248 (273)
Q Consensus 229 a~~~g~~~~~~~~~~~~~~~ 248 (273)
+++.|+++++++++++.-+.
T Consensus 273 a~~~g~~~~l~~~a~~iN~~ 292 (425)
T PRK15182 273 SQGIGYYPEIILAGRRLNDN 292 (425)
T ss_pred HHhcCCCcHHHHHHHHHHHH
Confidence 99999999999999876543
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.5e-25 Score=181.59 Aligned_cols=225 Identities=21% Similarity=0.306 Sum_probs=178.9
Q ss_pred cccCCCCCCCCHHHHHhc---CCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchh
Q 024066 2 FSDMGVPTKETPFEVAEA---SDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCIL 78 (273)
Q Consensus 2 l~~~Ga~~~~s~~e~~~~---advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~ 78 (273)
+++.|++.++|+.|.++. ..+|++|||..+.+.+|+.. +.+.+ ..|.+|||-.++....+++..+.++++
T Consensus 39 ~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~---la~~L--~~GDivIDGGNS~y~Ds~rr~~~l~~k-- 111 (300)
T COG1023 39 LKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDD---LAPLL--SAGDIVIDGGNSNYKDSLRRAKLLAEK-- 111 (300)
T ss_pred HHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHHH---HHhhc--CCCCEEEECCccchHHHHHHHHHHHhc--
Confidence 467799999999998764 78999999999899999865 44332 467899999999999999999999874
Q ss_pred hhccCCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcC---CeEEeCCcChHHHHHHHHHHHHHHH
Q 024066 79 KEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGK---NTIYCGGAGNGAAAKICNNLTMAVS 155 (273)
Q Consensus 79 ~~~~g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~---~i~~~G~~g~a~~~Kl~~n~~~~~~ 155 (273)
|++|+|+..|||+.+++.|. .+|+|||+++|++++|+|+.++. ...|+|+.|+|+.+||++|-+.+++
T Consensus 112 --------gi~flD~GTSGG~~G~~~G~-~lMiGG~~~a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGm 182 (300)
T COG1023 112 --------GIHFLDVGTSGGVWGAERGY-CLMIGGDEEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGM 182 (300)
T ss_pred --------CCeEEeccCCCCchhhhcCc-eEEecCcHHHHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHH
Confidence 49999999999999999998 89999999999999999999987 4789999999999999999999999
Q ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHhhcC-CcccccccCCCCCCcccCCCCCCCCCCCcchhhHHH---HHHHHHHHH
Q 024066 156 MLGVSEALTLGQSL--GISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAK---DLNLALASA 229 (273)
Q Consensus 156 ~~~~~Ea~~la~~~--Gl~~~~~~~~l~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~K---D~~~~~~~a 229 (273)
+++++|.+.+.++. .+|.+++.++.+.++ .+||+++..... +.+ +.+++ .+.-... .=+..++.+
T Consensus 183 M~a~aEGfelL~~s~fD~D~~~VA~vW~hGSVIrSWLldLt~~A---f~~---d~~L~---q~~g~v~dSGEGrWTv~~a 253 (300)
T COG1023 183 MQAIAEGFELLKNSPFDYDLEAVAEVWNHGSVIRSWLLDLTAEA---FKK---DPDLD---QISGRVSDSGEGRWTVEEA 253 (300)
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHhCcchHHHHHHHHHHHH---Hhh---CCCHH---HhcCeeccCCCceeehHHH
Confidence 99999999999986 577889999999876 678876533210 000 00110 0000111 123456788
Q ss_pred HHhCCCChHHHHHH-HHHHHHHH
Q 024066 230 KEVGVDCPLTSQAQ-DIYAKLCE 251 (273)
Q Consensus 230 ~~~g~~~~~~~~~~-~~~~~a~~ 251 (273)
-+.|+|.|++..++ .+|++-..
T Consensus 254 ldlgvpaPVia~al~~Rf~S~~~ 276 (300)
T COG1023 254 LDLGVPAPVIALALMMRFRSRQD 276 (300)
T ss_pred HhcCCCchHHHHHHHHHHhccch
Confidence 89999999998776 66665433
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.5e-23 Score=191.06 Aligned_cols=215 Identities=15% Similarity=0.149 Sum_probs=166.8
Q ss_pred cCCCCCCCCHHHHHhcCCEEEEeCCCh---------HHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHh
Q 024066 4 DMGVPTKETPFEVAEASDVVITMLPSS---------SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVS 74 (273)
Q Consensus 4 ~~Ga~~~~s~~e~~~~advvi~~v~~~---------~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~ 74 (273)
+.|...+.+. .++||+||+|||++ ..+.+++. ++.+++ ++|++||++||++|.+++++...+.
T Consensus 63 ~~g~l~~~~~---~~~aDvvii~vptp~~~~~~~dl~~v~~~~~---~i~~~l--~~g~iVI~~STv~pgtt~~~~~~l~ 134 (415)
T PRK11064 63 EGGYLRATTT---PEPADAFLIAVPTPFKGDHEPDLTYVEAAAK---SIAPVL--KKGDLVILESTSPVGATEQMAEWLA 134 (415)
T ss_pred hcCceeeecc---cccCCEEEEEcCCCCCCCCCcChHHHHHHHH---HHHHhC--CCCCEEEEeCCCCCCHHHHHHHHHH
Confidence 3454444442 34799999999998 56666663 466653 4678999999999999999999887
Q ss_pred hchhh----hccCCCCCceEEEec--CCCCHHHHhcCceEEEeec-CHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHH
Q 024066 75 NCILK----EKKDSWENPVMLDAP--VSGGVLAAEAGTLTFMVGG-SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKIC 147 (273)
Q Consensus 75 ~~g~~----~~~g~~~g~~~ldap--v~G~~~~a~~g~l~~~vgG-~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~ 147 (273)
+++.. ..+|....+.++++| +.+|...+..+++..++|| +++.+++++++|+.++..++++|++++|+.+|++
T Consensus 135 ~~~~~~~~~~~~g~~~~f~v~~~PE~~~~G~~~~~~~~~~~vvgG~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~ 214 (415)
T PRK11064 135 EARPDLTFPQQAGEQADINIAYCPERVLPGQVMVELIKNDRVIGGMTPVCSARASELYKIFLEGECVVTNSRTAEMCKLT 214 (415)
T ss_pred HhccCCcccccccCCCCeEEEECCCccCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHH
Confidence 64200 000101236789999 8888888888899999999 8999999999999999989999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHH
Q 024066 148 NNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALA 227 (273)
Q Consensus 148 ~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~ 227 (273)
+|++.+.++++++|+..+|++.|+|++++++.++..+ ++ ..+. ..++|...|+.||...+..
T Consensus 215 ~N~~~a~~ia~~nE~~~lae~~GiD~~~v~~~~~~~~---ri-~~l~--------------pG~G~GG~ClpkD~~~L~~ 276 (415)
T PRK11064 215 ENSFRDVNIAFANELSLICADQGINVWELIRLANRHP---RV-NILQ--------------PGPGVGGHCIAVDPWFIVA 276 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhccCC---Cc-ccCC--------------CCCCCCCccccccHHHHHH
Confidence 9999999999999999999999999999999987542 11 1111 1235677899999987744
Q ss_pred HHHHhCCCChHHHHHHHHHH
Q 024066 228 SAKEVGVDCPLTSQAQDIYA 247 (273)
Q Consensus 228 ~a~~~g~~~~~~~~~~~~~~ 247 (273)
+.+.++++++++++.-+
T Consensus 277 ---~~~~~~~l~~~a~~~N~ 293 (415)
T PRK11064 277 ---QNPQQARLIRTAREVND 293 (415)
T ss_pred ---hcCCccHHHHHHHHHHH
Confidence 55667888888876443
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=180.05 Aligned_cols=201 Identities=17% Similarity=0.170 Sum_probs=159.0
Q ss_pred CCCCCCC--HHHHHhcCCEEEEeCCCh----------HHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHH
Q 024066 6 GVPTKET--PFEVAEASDVVITMLPSS----------SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAV 73 (273)
Q Consensus 6 Ga~~~~s--~~e~~~~advvi~~v~~~----------~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~ 73 (273)
+.+...| +.+++++||+||+|||++ .++++++. ++.+ + .+|++||++||++|.+++++.+.+
T Consensus 58 ~~~l~~t~~~~~~~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~---~i~~-~--~~g~lVV~~STv~pgtt~~l~~~~ 131 (388)
T PRK15057 58 KIHFNATLDKNEAYRDADYVIIATPTDYDPKTNYFNTSSVESVIK---DVVE-I--NPYAVMVIKSTVPVGFTAAMHKKY 131 (388)
T ss_pred CCcEEEecchhhhhcCCCEEEEeCCCCCccCCCCcChHHHHHHHH---HHHh-c--CCCCEEEEeeecCCchHHHHHHHh
Confidence 4445443 788899999999999988 67777774 3544 2 356899999999999999999987
Q ss_pred hhchhhhccCCCCCceEEEecCCCCHHHHhcCce--------EEEeecCHHHHHHHHHHHHH--hcCCeE-EeCCcChHH
Q 024066 74 SNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL--------TFMVGGSEDAYQAAKPLFLS--MGKNTI-YCGGAGNGA 142 (273)
Q Consensus 74 ~~~g~~~~~g~~~g~~~ldapv~G~~~~a~~g~l--------~~~vgG~~~~~~~~~~~l~~--~~~~i~-~~G~~g~a~ 142 (273)
.++ ++.| +|..+..|++ .+++||+++..+++.++|.. ++..+. +++++++|+
T Consensus 132 ~~~----------~v~~-------~PE~l~~G~a~~d~~~p~rvv~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE 194 (388)
T PRK15057 132 RTE----------NIIF-------SPEFLREGKALYDNLHPSRIVIGERSERAERFAALLQEGAIKQNIPTLFTDSTEAE 194 (388)
T ss_pred hcC----------cEEE-------CcccccCCcccccccCCCEEEEEcCcHHHHHHHHHHHhhhhcCCCceeeCCHHHHH
Confidence 642 2444 7788888898 89999999989999999954 565555 789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHH
Q 024066 143 AAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDL 222 (273)
Q Consensus 143 ~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~ 222 (273)
.+|+++|++...++++++|+..+|++.|+|.++++++++..+ .+...+ + ...++|...|+.||.
T Consensus 195 ~~Kl~~N~~~a~~Ia~~NE~a~lae~~GiD~~eV~~a~~~d~---ri~~~~----------l---~pG~G~GG~ClpkD~ 258 (388)
T PRK15057 195 AIKLFANTYLAMRVAYFNELDSYAESLGLNTRQIIEGVCLDP---RIGNHY----------N---NPSFGYGGYCLPKDT 258 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhcCCC---CCCCcc----------C---CCCCCCCCcChhhhH
Confidence 999999999999999999999999999999999999997642 111100 0 012367788999999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHH
Q 024066 223 NLALASAKEVGVDCPLTSQAQDIYA 247 (273)
Q Consensus 223 ~~~~~~a~~~g~~~~~~~~~~~~~~ 247 (273)
..+...+ .++++++++++++.-+
T Consensus 259 ~~L~~~~--~~~~~~l~~~~~~~N~ 281 (388)
T PRK15057 259 KQLLANY--QSVPNNLISAIVDANR 281 (388)
T ss_pred HHHHHhc--cCCCcHHHHHHHHHHH
Confidence 9887665 5678899999886543
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7e-22 Score=178.20 Aligned_cols=235 Identities=16% Similarity=0.160 Sum_probs=184.4
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCC-CCHHH--HHHHHHHHhhchhhhccC
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST-IDPQT--SRNISAAVSNCILKEKKD 83 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST-~~P~~--~~~l~~~~~~~g~~~~~g 83 (273)
+..+++++|+++++|+||+|+|+. ++++++.. + +++.++|+++| +.|.+ .+.+++.+.+. . ..
T Consensus 62 ~~~~~~~~e~~~~aD~Vi~~v~~~-~~~~v~~~---l------~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~--~-~~- 127 (328)
T PRK14618 62 LYPTADPEEALAGADFAVVAVPSK-ALRETLAG---L------PRALGYVSCAKGLAPDGGRLSELARVLEFL--T-QA- 127 (328)
T ss_pred eEEeCCHHHHHcCCCEEEEECchH-HHHHHHHh---c------CcCCEEEEEeeccccCCCccchHHHHHHHh--c-CC-
Confidence 446778999999999999999998 56877732 2 24468999999 58775 67787776531 0 01
Q ss_pred CCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeE--------EeCC---------cChHHHHHH
Q 024066 84 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTI--------YCGG---------AGNGAAAKI 146 (273)
Q Consensus 84 ~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~--------~~G~---------~g~a~~~Kl 146 (273)
++.+++.|..........+++.++.||+++.+++++++|+..+.+++ ++|. .|.++.+|+
T Consensus 128 ---~~~~~~gP~~a~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~ 204 (328)
T PRK14618 128 ---RVAVLSGPNHAEEIARFLPAATVVASPEPGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKL 204 (328)
T ss_pred ---CeEEEECccHHHHHHcCCCeEEEEEeCCHHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCC
Confidence 25677777655555555578899999999999999999999998776 4565 699999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh----cCCcccccccCCCCCCcccCCCCCC---C-CCCCcchhhH
Q 024066 147 CNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNS----SSARCWSSDSYNPVPGVMEGVPASR---N-YGGGFASKLM 218 (273)
Q Consensus 147 ~~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~----~~~~s~~~~~~~~~~~~~~~~~~~~---~-~~~~f~~~~~ 218 (273)
.+|+.......++.|++.++++.|++++++++++.. +++.|+.++.+... .++..+ + |++.|.+...
T Consensus 205 ~~n~~~~~~~~~~~E~~~la~~~G~~~~~~~~~~~~gDl~~t~~s~~~rn~~~g-----~~~~~g~~~~~~~~~~~~~~g 279 (328)
T PRK14618 205 GDNAKAALITRGLREMVRFGVALGAEEATFYGLSGLGDLIATATSPHSRNRAAG-----EAIVRGVDREHLEAGGKVVEG 279 (328)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhCCCccchhcCcchhheeeEeccCCCccHHHH-----HHHhCCCCHHHHHHcCCEEec
Confidence 999999999999999999999999999999999765 34566665543211 123344 3 6678999999
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhcCC
Q 024066 219 AKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGK 270 (273)
Q Consensus 219 ~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~G~g~~d~sai~~~~~~~~ 270 (273)
.||++++.+++++.|+++|+++.+.+++ +++.|...+++.+.+++
T Consensus 280 ~kd~~~~~~la~~~~~~~Pl~~~~~~~~-------~~~~~~~~~~~~~~~~~ 324 (328)
T PRK14618 280 LYTVKALDAWAKAHGHDLPIVEAVARVA-------RGGWDPLAGLRSLMGRE 324 (328)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHH-------hCCCCHHHHHHHHhcCC
Confidence 9999999999999999999999999887 67778888888776554
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.3e-21 Score=169.75 Aligned_cols=223 Identities=17% Similarity=0.205 Sum_probs=174.6
Q ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCC-CCHHHHHHHHHHHhhchhhhccCCCCCce
Q 024066 11 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST-IDPQTSRNISAAVSNCILKEKKDSWENPV 89 (273)
Q Consensus 11 ~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST-~~P~~~~~l~~~~~~~g~~~~~g~~~g~~ 89 (273)
+++.++++++|+||+|+|++ ++++++.. +.+.. ..++++||++|+ ..|++.+.+.+.+.. .
T Consensus 39 ~~~~~~~~~advvi~~vp~~-~~~~v~~~---l~~~~-~~~~~ivi~~s~gi~~~~~~~~s~~~~~-------------~ 100 (308)
T PRK14619 39 LSLAAVLADADVIVSAVSMK-GVRPVAEQ---VQALN-LPPETIIVTATKGLDPETTRTPSQIWQA-------------A 100 (308)
T ss_pred CCHHHHHhcCCEEEEECChH-HHHHHHHH---HHHhc-CCCCcEEEEeCCcccCCCCcCHHHHHHH-------------H
Confidence 57899999999999999995 88888853 33210 134679999987 888888877777653 3
Q ss_pred EEEecCC--CCHHHHh-----cCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCC-cC----------------hHHHHH
Q 024066 90 MLDAPVS--GGVLAAE-----AGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG-AG----------------NGAAAK 145 (273)
Q Consensus 90 ~ldapv~--G~~~~a~-----~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~-~g----------------~a~~~K 145 (273)
|.++||. ++|..+. ..++.+++|++.+.+++++++|+.++.++++.++ .| .+..+|
T Consensus 101 ~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~~~v~~ll~~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~ 180 (308)
T PRK14619 101 FPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQIFSSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQ 180 (308)
T ss_pred cCCCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHHHHHHHHhCCCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcC
Confidence 5677874 4544332 2477899999999999999999999888886655 23 244555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhH-------
Q 024066 146 ICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLM------- 218 (273)
Q Consensus 146 l~~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~------- 218 (273)
+.+|........++.|++.++++.|++++.++++ .+.++++... + .+..|+|.++|.+...
T Consensus 181 l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~~~--~g~gd~~~t~-----~-----~~~~rn~~~g~~l~~g~~~~~~~ 248 (308)
T PRK14619 181 LGTNAKAALVTRALPEMIRVGTHLGAQTETFYGL--SGLGDLLATC-----T-----SPLSRNYQVGYGLAQGKSLEQIL 248 (308)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhCCCccccccc--cchhhhheee-----c-----CCCCccHHHHHHHHCCCCHHHHH
Confidence 9999999999999999999999999999999984 3555544411 1 2346788878888887
Q ss_pred ---------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhcCC
Q 024066 219 ---------AKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGK 270 (273)
Q Consensus 219 ---------~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~G~g~~d~sai~~~~~~~~ 270 (273)
.||++++.+++++.|+++|+++.+.++| +++.+...+++.+.++.
T Consensus 249 ~~~~~~~eG~~~~~~~~~~~~~~~~~~Pl~~~v~~i~-------~~~~~~~~~~~~l~~~~ 302 (308)
T PRK14619 249 AELEGTAEGVNTANVLVQLAQQQNIAVPITEQVYRLL-------QGEITPQQALEELMERD 302 (308)
T ss_pred HhcCCEeecHHHHHHHHHHHHHcCCCCCHHHHHHHHH-------cCCCCHHHHHHHHHcCC
Confidence 9999999999999999999999999999 57778888888776543
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-19 Score=161.48 Aligned_cols=221 Identities=12% Similarity=0.105 Sum_probs=173.6
Q ss_pred CCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCC
Q 024066 8 PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWEN 87 (273)
Q Consensus 8 ~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g 87 (273)
+.+.++++++++||+||.|+|++.+++..+++. +-+. ..+.++|.+ |+++....++++.+... +
T Consensus 71 ~~~~~~~~a~~~ad~Vi~avpe~~~~k~~~~~~--l~~~---~~~~~ii~s-sts~~~~~~la~~~~~~----------~ 134 (308)
T PRK06129 71 RVTDSLADAVADADYVQESAPENLELKRALFAE--LDAL---APPHAILAS-STSALLASAFTEHLAGR----------E 134 (308)
T ss_pred EEECcHHHhhCCCCEEEECCcCCHHHHHHHHHH--HHHh---CCCcceEEE-eCCCCCHHHHHHhcCCc----------c
Confidence 567899999999999999999998877766542 2221 233566764 44455677888877431 3
Q ss_pred ceEEEecCCCCHHHHhcCceEEEee---cCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHH
Q 024066 88 PVMLDAPVSGGVLAAEAGTLTFMVG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALT 164 (273)
Q Consensus 88 ~~~ldapv~G~~~~a~~g~l~~~vg---G~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~ 164 (273)
..++|.|+.+... ..+..+++ ++++++++++++++.+|++++|+|+.+.|. ++||+ +.+.++|++.
T Consensus 135 ~~~~~hp~~p~~~----~~lveiv~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~---i~nrl----~~a~~~EA~~ 203 (308)
T PRK06129 135 RCLVAHPINPPYL----IPVVEVVPAPWTAPATLARAEALYRAAGQSPVRLRREIDGF---VLNRL----QGALLREAFR 203 (308)
T ss_pred cEEEEecCCCccc----CceEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccH---HHHHH----HHHHHHHHHH
Confidence 6899999986422 14677886 889999999999999999999999866665 56664 4489999999
Q ss_pred HHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHH
Q 024066 165 LGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQD 244 (273)
Q Consensus 165 la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~~~~~~~ 244 (273)
++++.|++++++.++++.+.+.+|.+ +.|+ +..+.|.++|...++.||+.+..+++++.+.|.|++....+
T Consensus 204 l~~~g~~~~~~id~~~~~~~g~~~~~--~gp~-------~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~ 274 (308)
T PRK06129 204 LVADGVASVDDIDAVIRDGLGLRWSF--MGPF-------ETIDLNAPGGVADYAQRYGPMYRRMAAERGQPVPWDGELVA 274 (308)
T ss_pred HHHcCCCCHHHHHHHHHhccCCCccC--cCHH-------HHHhccccccHHHHHHHHHHHHHhhccccCCCchhhHHHHH
Confidence 99999999999999999998888764 3332 23456778899999999999999999999999999988887
Q ss_pred HHHHHHHCCCCCCcHHHHHH
Q 024066 245 IYAKLCENGHDSKDFSCVFQ 264 (273)
Q Consensus 245 ~~~~a~~~G~g~~d~sai~~ 264 (273)
......+.-++..++..+.+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~ 294 (308)
T PRK06129 275 RVEAERRAALPLDQLAARQA 294 (308)
T ss_pred HHHHHHHHHcCCCCHHHHHH
Confidence 77777777788888877655
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.9e-20 Score=164.33 Aligned_cols=239 Identities=17% Similarity=0.175 Sum_probs=175.4
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhchhhhccCC
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNCILKEKKDS 84 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~S-T~~P~~~~~l~~~~~~~g~~~~~g~ 84 (273)
+++.+.++.+++++||+||+|++++ ++++++.+ +.+.. .++++||+++ |++|++.+++++.+.+.. +.
T Consensus 58 ~~~~~~~~~~~~~~~D~vi~~v~~~-~~~~v~~~---l~~~~--~~~~~vi~~~ngv~~~~~~~~~~~l~~~~-----~~ 126 (325)
T PRK00094 58 NLRATTDLAEALADADLILVAVPSQ-ALREVLKQ---LKPLL--PPDAPIVWATKGIEPGTGKLLSEVLEEEL-----PD 126 (325)
T ss_pred CeEEeCCHHHHHhCCCEEEEeCCHH-HHHHHHHH---HHhhc--CCCCEEEEEeecccCCCCCcHHHHHHHHc-----CC
Confidence 5667788999999999999999984 77888753 44432 3457899888 999988888888776531 10
Q ss_pred CCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCC-----------------cChHHHHHHH
Q 024066 85 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG-----------------AGNGAAAKIC 147 (273)
Q Consensus 85 ~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~-----------------~g~a~~~Kl~ 147 (273)
.....+++.|..+....+...++.++.|++.+.+++++++|+..+.++++..+ .|.+..+|+.
T Consensus 127 ~~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~ 206 (325)
T PRK00094 127 LAPIAVLSGPSFAKEVARGLPTAVVIASTDEELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLG 206 (325)
T ss_pred CCceEEEECccHHHHHHcCCCcEEEEEeCCHHHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCC
Confidence 01245777787766555666677788888999999999999998876655433 2788889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc----CCcccccccCCCCCCcccCCCCCCC-C-----CCCcchhh
Q 024066 148 NNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS----SARCWSSDSYNPVPGVMEGVPASRN-Y-----GGGFASKL 217 (273)
Q Consensus 148 ~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~----~~~s~~~~~~~~~~~~~~~~~~~~~-~-----~~~f~~~~ 217 (273)
+|.+......++.|++.++++.|+|++++++++..+ ...++..+.+.+ + ..+..+. + .++ ....
T Consensus 207 ~n~~~~~~~~~~~E~~~la~~~G~d~~~~~~~~~~~~~~~~~~s~~~~~~~~--g---~~~~~~~~~~~~~~~~~-~~~~ 280 (325)
T PRK00094 207 DNARAALITRGLAEITRLGVALGANPETFLGLAGLGDLVLTCTSPLSRNRRF--G---LALGQGKSLEEALAEIG-MVAE 280 (325)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCCChhhhhcccHhhhhhhhccCCCCccHHH--H---HHHHCCCCHHHHHHHcC-CEee
Confidence 999999999999999999999999999998876543 111222111110 0 0111111 1 112 4567
Q ss_pred HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhc
Q 024066 218 MAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 268 (273)
Q Consensus 218 ~~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~G~g~~d~sai~~~~~~ 268 (273)
..||++++.+++++.|+++|+.+.+.++| +++.+...+++.+.+
T Consensus 281 ~~kd~~~~~~~a~~~~~~~P~~~~~~~~~-------~~~~~~~~~~~~~~~ 324 (325)
T PRK00094 281 GVRTAKAVYELAKKLGVEMPITEAVYAVL-------YEGKDPREAVEDLMG 324 (325)
T ss_pred cHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------cCCCCHHHHHHHHhc
Confidence 79999999999999999999999999998 677888888877654
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5e-19 Score=159.63 Aligned_cols=163 Identities=17% Similarity=0.197 Sum_probs=132.3
Q ss_pred ccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHH-HHHHHHHhhchhhhc
Q 024066 3 SDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTS-RNISAAVSNCILKEK 81 (273)
Q Consensus 3 ~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~-~~l~~~~~~~g~~~~ 81 (273)
.+.|++++.++.+++++||+||+|+|++.++++++. ++.+.+ +.+++|||+||++|... +.+.+++.... +
T Consensus 65 ~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~---~L~~~L--~~g~IVId~ST~~~~~~s~~l~~~l~~~~---~ 136 (342)
T PRK12557 65 EDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIAK---NILPHL--PENAVICNTCTVSPVVLYYSLEGELRTKR---K 136 (342)
T ss_pred HHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHHH---HHHhhC--CCCCEEEEecCCCHHHHHHHHHHHhcccc---c
Confidence 456888889999999999999999999887899985 466653 45689999999999998 77777775310 0
Q ss_pred cCCCCCceEEE-ecCCCCHHHHhcCceEEEeec--------CHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHH
Q 024066 82 KDSWENPVMLD-APVSGGVLAAEAGTLTFMVGG--------SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 152 (273)
Q Consensus 82 ~g~~~g~~~ld-apv~G~~~~a~~g~l~~~vgG--------~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~ 152 (273)
..|+.+.+ +++.|++ .+.+.++.|| +++.+++++++|+.++.++++++ .|.++.+|+++|++.
T Consensus 137 ---~~gi~~~~p~~v~Gae----~g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~~-~g~~~~vk~~~n~l~ 208 (342)
T PRK12557 137 ---DVGISSMHPAAVPGTP----QHGHYVIAGKTTNGTELATEEQIEKCVELAESIGKEPYVVP-ADVVSAVADMGSLVT 208 (342)
T ss_pred ---ccCeeecCCccccccc----cchheEEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEeC-HHHHHHHHHHHHHHH
Confidence 01355554 4455554 4566788876 88999999999999999887766 699999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 024066 153 AVSMLGVSEALTLGQSLGISASTLTKILN 181 (273)
Q Consensus 153 ~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~ 181 (273)
+.++++.+|++.++++.|.++.++++-+.
T Consensus 209 av~~a~~aE~~~l~~~~~~~p~~~~~~~~ 237 (342)
T PRK12557 209 AVALSGVLDYYSVGTKIIKAPKEMIEKQI 237 (342)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999998877544
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=7e-17 Score=143.49 Aligned_cols=219 Identities=19% Similarity=0.260 Sum_probs=164.4
Q ss_pred CCCCCCHHHHHh---cCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccC
Q 024066 7 VPTKETPFEVAE---ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKD 83 (273)
Q Consensus 7 a~~~~s~~e~~~---~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g 83 (273)
...+.|+.|.+. ....|++||.....|++++.. +++.+ .+|.++||-.++....+.+..+.+++.
T Consensus 52 i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~~I~~---L~p~L--e~gDIiIDGGNs~y~DT~RR~~eL~~~------- 119 (473)
T COG0362 52 IVPAYSIEEFVASLEKPRKILLMVKAGTPVDAVIEQ---LLPLL--EKGDIIIDGGNSHYKDTIRRNKELSEK------- 119 (473)
T ss_pred ccccCcHHHHHHHhcCCceEEEEEecCCcHHHHHHH---HHhhc--CCCCEEEeCCCcCCchHHHHHHHHHhc-------
Confidence 455778887655 588999999998888888864 66664 567899999999888888888888763
Q ss_pred CCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcC------CeEEeCCcChHHHHHHHHHHHHHHHHH
Q 024066 84 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGK------NTIYCGGAGNGAAAKICNNLTMAVSML 157 (273)
Q Consensus 84 ~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~------~i~~~G~~g~a~~~Kl~~n~~~~~~~~ 157 (273)
|+.|+-+.||||..+|..|. ++|.||++++|+.+.|+|+.++. ++.|+|+-|+|+.+||++|-+.++-|+
T Consensus 120 ---Gi~FvG~GVSGGEeGA~~GP-SiMpGG~~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQ 195 (473)
T COG0362 120 ---GILFVGMGVSGGEEGARHGP-SIMPGGQKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQ 195 (473)
T ss_pred ---CCeEEeccccccccccccCC-CcCCCCCHHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHH
Confidence 48999999999999999999 99999999999999999999964 478999999999999999999999999
Q ss_pred HHHHHHHHHHH-cCCCHHHHHHHHhh---cCCcccccccCCCCCCcccCCCCCCCCCCC-cchhhHHH-----H-HHHHH
Q 024066 158 GVSEALTLGQS-LGISASTLTKILNS---SSARCWSSDSYNPVPGVMEGVPASRNYGGG-FASKLMAK-----D-LNLAL 226 (273)
Q Consensus 158 ~~~Ea~~la~~-~Gl~~~~~~~~l~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-f~~~~~~K-----D-~~~~~ 226 (273)
.++|++.+.+. .|++.+++.+++.. +-.+|++.+....+.+. .|-+.+ -=++..+. . =+...
T Consensus 196 lIaE~Y~ilk~~lgls~~ei~~vF~~WN~geL~SYLIeIT~~IL~~-------kD~~~~kplvd~ILD~AgQKGTGkWt~ 268 (473)
T COG0362 196 LIAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITADILRK-------KDEEGGKPLVDKILDKAGQKGTGKWTV 268 (473)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHhccCcchHHHHHHHHHHHhh-------cCcccCCchHHHHHHHhcCCCcchhhH
Confidence 99999999998 89999888777654 44445443322111111 111111 01111110 0 13345
Q ss_pred HHHHHhCCCChHHHHHH-HHHHH
Q 024066 227 ASAKEVGVDCPLTSQAQ-DIYAK 248 (273)
Q Consensus 227 ~~a~~~g~~~~~~~~~~-~~~~~ 248 (273)
..|-+.|+|++++..+. .+|-+
T Consensus 269 ~~AldlGvP~t~I~eaVfAR~lS 291 (473)
T COG0362 269 ISALDLGVPLTLITEAVFARYLS 291 (473)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHH
Confidence 66888999999876553 55543
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-15 Score=141.40 Aligned_cols=211 Identities=16% Similarity=0.142 Sum_probs=159.0
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChH--------------HHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHH
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSS--------------HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAA 72 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~--------------av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~ 72 (273)
.+..++..+++++||++|+|||+|. .+++++. .+.+.+ +++++||..||+.|.+++++.+.
T Consensus 66 l~~t~~~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~---~i~~~l--~~~~lVv~~STvp~Gtt~~~~~~ 140 (473)
T PLN02353 66 LFFSTDVEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAAR---MIADVS--KSDKIVVEKSTVPVKTAEAIEKI 140 (473)
T ss_pred EEEEcCHHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHH---HHHhhC--CCCcEEEEeCCCCCChHHHHHHH
Confidence 4456778889999999999998775 3444543 355443 45789999999999999999998
Q ss_pred HhhchhhhccCCCCCceEEEecCCCCHHHHhcCce---EEEeecC-----HHHHHHHHHHHHHhcC-CeEEeCCcChHHH
Q 024066 73 VSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL---TFMVGGS-----EDAYQAAKPLFLSMGK-NTIYCGGAGNGAA 143 (273)
Q Consensus 73 ~~~~g~~~~~g~~~g~~~ldapv~G~~~~a~~g~l---~~~vgG~-----~~~~~~~~~~l~~~~~-~i~~~G~~g~a~~ 143 (273)
+.+.+ .| .++++.-+|..=.+..+..... .+++||. +++.++++.+++.+.+ ..+.+.++..|..
T Consensus 141 l~~~~----~g--~~f~v~~~PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~ 214 (473)
T PLN02353 141 LTHNS----KG--INFQILSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAEL 214 (473)
T ss_pred HHhhC----CC--CCeEEEECCCccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHH
Confidence 87531 12 1467888997665555554322 3667985 2357888999998863 3566778999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHH
Q 024066 144 AKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLN 223 (273)
Q Consensus 144 ~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~ 223 (273)
.|++.|.+...+++.++|...+|++.|+|..++.+.++..+ ++... + + .-.++|...|+.||..
T Consensus 215 ~K~~eN~~ra~~Iaf~NEla~lce~~giD~~eV~~~~~~d~---rig~~------~----l---~PG~G~GG~ClpkD~~ 278 (473)
T PLN02353 215 SKLAANAFLAQRISSVNAMSALCEATGADVSQVSHAVGKDS---RIGPK------F----L---NASVGFGGSCFQKDIL 278 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCC---cCCCC------C----C---CCCCCCCCcchhhhHH
Confidence 99999999999999999999999999999999998887542 11000 0 0 0113567789999999
Q ss_pred HHHHHHHHhCCC--ChHHHHHHH
Q 024066 224 LALASAKEVGVD--CPLTSQAQD 244 (273)
Q Consensus 224 ~~~~~a~~~g~~--~~~~~~~~~ 244 (273)
.+...+++.|++ +++++++++
T Consensus 279 ~L~~~a~~~g~~~~~~l~~~~~~ 301 (473)
T PLN02353 279 NLVYICECNGLPEVAEYWKQVIK 301 (473)
T ss_pred HHHHHHHHcCCchHHHHHHHHHH
Confidence 999999999998 778777664
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.5e-15 Score=133.64 Aligned_cols=213 Identities=15% Similarity=0.155 Sum_probs=159.7
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHH---------HHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhch
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSH---------VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCI 77 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~a---------v~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g 77 (273)
-+..++.+++++++|++|+||++|.. |++|.. .+.+.+ .+.++||.-||+.|.++.++.+.+.+..
T Consensus 64 l~fTtd~~~a~~~adv~fIavgTP~~~dg~aDl~~V~ava~---~i~~~~--~~~~vvV~KSTVPvGt~~~v~~~i~~~~ 138 (414)
T COG1004 64 LRFTTDYEEAVKDADVVFIAVGTPPDEDGSADLSYVEAVAK---DIGEIL--DGKAVVVIKSTVPVGTTEEVRAKIREEN 138 (414)
T ss_pred EEEEcCHHHHHhcCCEEEEEcCCCCCCCCCccHHHHHHHHH---HHHhhc--CCCeEEEEcCCCCCCchHHHHHHHHhhc
Confidence 45678899999999999999999863 444543 355553 3448999999999999999999886531
Q ss_pred hhhccCCCCCceEEEecCCCCHHHHhcCce---EEEeecCHH-HHHHHHHHHHHh---cCCeEEeCCcChHHHHHHHHHH
Q 024066 78 LKEKKDSWENPVMLDAPVSGGVLAAEAGTL---TFMVGGSED-AYQAAKPLFLSM---GKNTIYCGGAGNGAAAKICNNL 150 (273)
Q Consensus 78 ~~~~~g~~~g~~~ldapv~G~~~~a~~g~l---~~~vgG~~~-~~~~~~~~l~~~---~~~i~~~G~~g~a~~~Kl~~n~ 150 (273)
. + +.+..+-.|-+-....|....+ -+++|...+ +.+.++.+++.+ ..++++ -+...|.++|++.|.
T Consensus 139 ---~-~--~~f~v~~NPEFLREG~Av~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~~~p~l~-t~~~~AE~IKyaaNa 211 (414)
T COG1004 139 ---S-G--KDFEVASNPEFLREGSAVYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQDVPILF-TDLREAELIKYAANA 211 (414)
T ss_pred ---c-c--CCceEecChHHhcCcchhhhccCCCeEEEccCChhHHHHHHHHHhhhhhcCCCEEE-ecchHHHHHHHHHHH
Confidence 1 1 1345666665554444444444 488998654 577888888775 444444 467789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHH
Q 024066 151 TMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAK 230 (273)
Q Consensus 151 ~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~ 230 (273)
++++-++.++|...+|++.|+|.+++.+.+... ..+...+. +-..+|..+|+.||.+.++..++
T Consensus 212 fLAtKIsFiNEia~ice~~g~D~~~V~~gIGlD---~RIG~~fl-------------~aG~GyGGsCfPKD~~AL~~~a~ 275 (414)
T COG1004 212 FLATKISFINEIANICEKVGADVKQVAEGIGLD---PRIGNHFL-------------NAGFGYGGSCFPKDTKALIANAE 275 (414)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCC---chhhHhhC-------------CCCCCCCCcCCcHhHHHHHHHHH
Confidence 999999999999999999999999999888543 12211110 01236788999999999999999
Q ss_pred HhCCCChHHHHHHHHHH
Q 024066 231 EVGVDCPLTSQAQDIYA 247 (273)
Q Consensus 231 ~~g~~~~~~~~~~~~~~ 247 (273)
+.|.+..+++++.+.-+
T Consensus 276 ~~~~~~~ll~avv~vN~ 292 (414)
T COG1004 276 ELGYDPNLLEAVVEVNE 292 (414)
T ss_pred hcCCchHHHHHHHHHHH
Confidence 99999999999876543
|
|
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.2e-15 Score=131.13 Aligned_cols=218 Identities=19% Similarity=0.242 Sum_probs=164.9
Q ss_pred CCCCCCHHHHHh---cCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccC
Q 024066 7 VPTKETPFEVAE---ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKD 83 (273)
Q Consensus 7 a~~~~s~~e~~~---~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g 83 (273)
...+.|+.|.+. ...+|++.|.....|+..+.. +.+.+ .+|.+|||-.+.....+.+..+.+.+.
T Consensus 55 i~ga~S~ed~v~klk~PR~iillvkAG~pVD~~I~~---L~p~L--ekgDiIIDGGNs~y~dT~RR~~el~k~------- 122 (487)
T KOG2653|consen 55 IIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQFIEE---LVPYL--EKGDIIIDGGNSEYQDTERRCRELAKK------- 122 (487)
T ss_pred ccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHHHHHH---HHhhc--CCCCEEEeCCcccCcchHHHHHHHHhc-------
Confidence 345678988765 488999999999999988864 55553 467899999999888777777777653
Q ss_pred CCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcC-------CeEEeCCcChHHHHHHHHHHHHHHHH
Q 024066 84 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGK-------NTIYCGGAGNGAAAKICNNLTMAVSM 156 (273)
Q Consensus 84 ~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~-------~i~~~G~~g~a~~~Kl~~n~~~~~~~ 156 (273)
|+-|+-+.||||..+|+.|. ++|.||++++|..++++|..++. ...|+|+-|+|+.+||++|-+.++-|
T Consensus 123 ---GilfvG~GVSGGEEGAR~GP-SlMpGg~~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDM 198 (487)
T KOG2653|consen 123 ---GILFVGSGVSGGEEGARYGP-SLMPGGSKEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDM 198 (487)
T ss_pred ---CcEEEecCccCcccccccCC-ccCCCCChHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchH
Confidence 38999999999999999999 89999999999999999999853 36899999999999999999999999
Q ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHhh---cCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHH---------HH
Q 024066 157 LGVSEALTLGQS-LGISASTLTKILNS---SSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKD---------LN 223 (273)
Q Consensus 157 ~~~~Ea~~la~~-~Gl~~~~~~~~l~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD---------~~ 223 (273)
+.++|++.+.++ .|++.+++.+++.. +-..||+.+....+.++.+ ..|+ .+..|= =.
T Consensus 199 qLI~EaY~vlk~~~gls~~eia~vF~~WN~geleSfLieIT~dIlk~~d---~~G~-------~lv~kI~D~aGqKGTGk 268 (487)
T KOG2653|consen 199 QLICEAYDVLKSVLGLSNDEIAEVFDDWNKGELESFLIEITADILKFKD---EDGK-------PLVDKILDKAGQKGTGK 268 (487)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHhhcccchhHHHHHHhHHHhheec---cCCC-------hHHHHHHhhhcCCCccH
Confidence 999999999999 89999988887765 3334554433322221111 0111 111111 12
Q ss_pred HHHHHHHHhCCCChHHHHHH-HHHHHHH
Q 024066 224 LALASAKEVGVDCPLTSQAQ-DIYAKLC 250 (273)
Q Consensus 224 ~~~~~a~~~g~~~~~~~~~~-~~~~~a~ 250 (273)
.....|-+.|+|.|++..+. .++-++.
T Consensus 269 wt~~~Ale~g~Pv~lI~eavfaRclS~l 296 (487)
T KOG2653|consen 269 WTVISALELGVPVTLIGEAVFARCLSAL 296 (487)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 35567888999999886654 4544443
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-14 Score=137.64 Aligned_cols=155 Identities=15% Similarity=0.156 Sum_probs=127.0
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCC
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWE 86 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~ 86 (273)
++.++|+++++++||+||.|+|++.++++.+++ .+.+. .++ .+||++||+++..+ ++++.+...
T Consensus 68 i~~~~~~~ea~~~aD~Vieavpe~~~vk~~l~~--~l~~~--~~~-~~iI~SsTsgi~~s-~l~~~~~~~---------- 131 (495)
T PRK07531 68 LTFCASLAEAVAGADWIQESVPERLDLKRRVLA--EIDAA--ARP-DALIGSSTSGFLPS-DLQEGMTHP---------- 131 (495)
T ss_pred eEeeCCHHHHhcCCCEEEEcCcCCHHHHHHHHH--HHHhh--CCC-CcEEEEcCCCCCHH-HHHhhcCCc----------
Confidence 678899999999999999999999988887654 24333 233 47899999998865 666665432
Q ss_pred CceEEEecCCCCHHHHhcCceEEEeecC---HHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHH-HHH
Q 024066 87 NPVMLDAPVSGGVLAAEAGTLTFMVGGS---EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGV-SEA 162 (273)
Q Consensus 87 g~~~ldapv~G~~~~a~~g~l~~~vgG~---~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~-~Ea 162 (273)
+..+++.|+... ..+.++.+++|+ ++++++++++|+.+|+.+++++ |.++|++...++.++ .|+
T Consensus 132 ~r~~~~hP~nP~----~~~~Lvevv~g~~t~~e~~~~~~~~~~~lG~~~v~~~--------k~~~gfi~nrl~~a~~~EA 199 (495)
T PRK07531 132 ERLFVAHPYNPV----YLLPLVELVGGGKTSPETIRRAKEILREIGMKPVHIA--------KEIDAFVGDRLLEALWREA 199 (495)
T ss_pred ceEEEEecCCCc----ccCceEEEcCCCCCCHHHHHHHHHHHHHcCCEEEeec--------CCCcchhHHHHHHHHHHHH
Confidence 267999997732 234789999997 6899999999999999999997 688888888888884 999
Q ss_pred HHHHHHcCCCHHHHHHHHhhcCCcccc
Q 024066 163 LTLGQSLGISASTLTKILNSSSARCWS 189 (273)
Q Consensus 163 ~~la~~~Gl~~~~~~~~l~~~~~~s~~ 189 (273)
+.++++.|++++++.++++.+.+.+|.
T Consensus 200 ~~L~~~g~~s~~~id~~~~~g~g~~~~ 226 (495)
T PRK07531 200 LWLVKDGIATTEEIDDVIRYSFGLRWA 226 (495)
T ss_pred HHHHHcCCCCHHHHHHHHhhccCCCcc
Confidence 999999999999999999998887765
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.5e-15 Score=131.15 Aligned_cols=220 Identities=20% Similarity=0.205 Sum_probs=151.3
Q ss_pred cCC-CCCCCCHHHHHhcCCEEEEeCCChHH------HHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 024066 4 DMG-VPTKETPFEVAEASDVVITMLPSSSH------VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 76 (273)
Q Consensus 4 ~~G-a~~~~s~~e~~~~advvi~~v~~~~a------v~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~ 76 (273)
+.| -+..+++.++. .||++|+|||+|-. +..|....+.+.+.+ .+|.+||--||+.|.+++++..++.+.
T Consensus 69 ~~g~lraTtd~~~l~-~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L--~kG~LVIlEST~~PGTTe~v~~plle~ 145 (436)
T COG0677 69 ESGKLRATTDPEELK-ECDVFIICVPTPLKKYREPDLSYVESAARSIAPVL--KKGDLVILESTTPPGTTEEVVKPLLEE 145 (436)
T ss_pred hcCCceEecChhhcc-cCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhc--CCCCEEEEecCCCCCcHHHHHHHHHhh
Confidence 344 45556676655 89999999999842 112222223455554 567899999999999999999998763
Q ss_pred --hhhhccCCCCCceEEEec--CCCCHHHHhcCceEEEeec-CHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHH
Q 024066 77 --ILKEKKDSWENPVMLDAP--VSGGVLAAEAGTLTFMVGG-SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLT 151 (273)
Q Consensus 77 --g~~~~~g~~~g~~~ldap--v~G~~~~a~~g~l~~~vgG-~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~ 151 (273)
||+- ..++...-+| +.-|...-+--+..-++|| +++..+.+..+++.+-..++.+.+...|.+.||..|.+
T Consensus 146 ~sgL~~----~~Df~laysPERv~PG~~~~el~~~~kVIgG~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~f 221 (436)
T COG0677 146 RSGLKF----GEDFYLAYSPERVLPGNVLKELVNNPKVIGGVTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTF 221 (436)
T ss_pred cCCCcc----cceeeEeeCccccCCCchhhhhhcCCceeecCCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhh
Confidence 2211 1235666688 3333322222244677888 56788899999999988888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHH---HHHHHHHH
Q 024066 152 MAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAK---DLNLALAS 228 (273)
Q Consensus 152 ~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~K---D~~~~~~~ 228 (273)
...++++.+|...+|+++|||.++++++.++-+ | +..+.|.|+.-..++-- +|-| +-+..+ .---++++
T Consensus 222 RdVNIALaNElali~~~~GIdvwevIeaAnt~P---~-~~~~~PGpGvGGHCIpv---DP~f-l~~ka~~yg~~~rlI~t 293 (436)
T COG0677 222 RDVNIALANELALICNAMGIDVWEVIEAANTKP---R-VNIFYPGPGVGGHCIPV---DPYF-LTWKAPEYGLPARLIRT 293 (436)
T ss_pred hHHHHHHHHHHHHHHHHhCCcHHHHHHHhccCC---c-eeecCCCCCCCCccccc---Cchh-eeecccccCCchHHHHH
Confidence 999999999999999999999999999998753 3 34455555443222211 2323 222222 22335678
Q ss_pred HHHhCCCChH
Q 024066 229 AKEVGVDCPL 238 (273)
Q Consensus 229 a~~~g~~~~~ 238 (273)
|++.+-.||.
T Consensus 294 AreIN~~mP~ 303 (436)
T COG0677 294 AREINDSMPR 303 (436)
T ss_pred HHHHhccCCH
Confidence 8888766663
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.7e-14 Score=128.46 Aligned_cols=215 Identities=19% Similarity=0.177 Sum_probs=146.1
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCce
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPV 89 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~ 89 (273)
.+++ +++..+|+||+|++++. ..+++.. +.+.. .++++||+++ ..+...+++.+.+.+ ..
T Consensus 65 ~~~~-~~~~~~D~vil~vk~~~-~~~~~~~---l~~~~--~~~~iii~~~-nG~~~~~~l~~~~~~------------~~ 124 (341)
T PRK08229 65 STDP-AALATADLVLVTVKSAA-TADAAAA---LAGHA--RPGAVVVSFQ-NGVRNADVLRAALPG------------AT 124 (341)
T ss_pred ccCh-hhccCCCEEEEEecCcc-hHHHHHH---HHhhC--CCCCEEEEeC-CCCCcHHHHHHhCCC------------Cc
Confidence 3444 56789999999999875 4666642 44432 3456777774 455555666666532 24
Q ss_pred EEEe--c---CCCCHHHHh---cCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHH------
Q 024066 90 MLDA--P---VSGGVLAAE---AGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVS------ 155 (273)
Q Consensus 90 ~lda--p---v~G~~~~a~---~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~------ 155 (273)
++++ | ++++|..+. .|++.+. +.+.++++.++|+..+.++++.++++.++..|++.|.+...+
T Consensus 125 ~~~g~~~~~~~~~~pg~~~~~~~g~l~~~---~~~~~~~~~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~ 201 (341)
T PRK08229 125 VLAGMVPFNVISRGPGAFHQGTSGALAIE---ASPALRPFAAAFARAGLPLVTHEDMRAVQWAKLLLNLNNAVNALSGLP 201 (341)
T ss_pred EEEEEEEEEEEecCCceEEecCCCceEec---CCchHHHHHHHHHhcCCCceecchhHHHHHHHHHHHhccHHHHHhCCc
Confidence 5665 3 354444433 4554333 345678999999999999999999999999999999754444
Q ss_pred --------------HHHHHHHHHHHHHcCCCHHHHHHHHhhcC-----CcccccccCCCCCCcccCCCCCCCCCCCcchh
Q 024066 156 --------------MLGVSEALTLGQSLGISASTLTKILNSSS-----ARCWSSDSYNPVPGVMEGVPASRNYGGGFASK 216 (273)
Q Consensus 156 --------------~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~-----~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 216 (273)
..++.|++.++++.|++++.+.++...+. ..++..... ...+...++.. ..
T Consensus 202 ~~~l~~~~~~~~~~~~~~~E~~~va~a~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~---~~ 271 (341)
T PRK08229 202 LKEELAQRSYRRCLALAQREALRVLKAAGIRPARLTPLPPAWIPRLLRLPDPLFRRL-------AGRMLAIDPLA---RS 271 (341)
T ss_pred hHHHhcCchHHHHHHHHHHHHHHHHHHcCCCccccCCCChhhhhhhhcCChHHHHHH-------HHHhhccCCcc---Cc
Confidence 37899999999999999876654444331 111111110 00122233322 35
Q ss_pred hHHHHHH------------HHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCC
Q 024066 217 LMAKDLN------------LALASAKEVGVDCPLTSQAQDIYAKLCENGHDSK 257 (273)
Q Consensus 217 ~~~KD~~------------~~~~~a~~~g~~~~~~~~~~~~~~~a~~~G~g~~ 257 (273)
.+.||+. .+++.|++.|+++|..+.+.++++.+.+.|....
T Consensus 272 Sm~~D~~~~r~tEi~~i~G~i~~~a~~~gv~~P~~~~~~~~~~~~~~~~~~~~ 324 (341)
T PRK08229 272 SMSDDLAAGRATEIDWINGEIVRLAGRLGAPAPVNARLCALVHEAERAGARPA 324 (341)
T ss_pred hHHHHHHcCCcchHHHHhhHHHHHHHHcCCCCcHHHHHHHHHHHHHhCCCcCC
Confidence 6999999 7999999999999999999999999988875443
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.9e-13 Score=117.07 Aligned_cols=206 Identities=16% Similarity=0.158 Sum_probs=138.4
Q ss_pred ccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhchhhhc
Q 024066 3 SDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEK 81 (273)
Q Consensus 3 ~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~-ST~~P~~~~~l~~~~~~~g~~~~ 81 (273)
.+.|++.++++.|++++||+||+||+ ++++++++.+ +.+.. .++++||.. +++++++.+ +.+..
T Consensus 45 ~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl~~---l~~~~--~~~~~iIs~~~g~~~~~l~---~~~~~------ 109 (266)
T PLN02688 45 QSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVLTE---LRPLL--SKDKLLVSVAAGITLADLQ---EWAGG------ 109 (266)
T ss_pred HHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHHHH---HHhhc--CCCCEEEEecCCCcHHHHH---HHcCC------
Confidence 45688889999999999999999996 6789999863 44432 345677755 555555444 32210
Q ss_pred cCCCCCceEE-EecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCC---------cChHHHHHHHHHHH
Q 024066 82 KDSWENPVML-DAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG---------AGNGAAAKICNNLT 151 (273)
Q Consensus 82 ~g~~~g~~~l-dapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~---------~g~a~~~Kl~~n~~ 151 (273)
..++ ..|..+...+.....+....+++++.+++++++|+.+|. ++|+++ .|+|.++
T Consensus 110 ------~~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~G~-~~~~~e~~~d~~~~~~g~g~a~------- 175 (266)
T PLN02688 110 ------RRVVRVMPNTPCLVGEAASVMSLGPAATADDRDLVATLFGAVGK-IWVVDEKLLDAVTGLSGSGPAY------- 175 (266)
T ss_pred ------CCEEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHHHHHHhCCC-EEEeCHHHcchhHhhhcCHHHH-------
Confidence 1466 366665544333222222233478899999999999999 999844 6666663
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCC---cchhhHHHHHHHHHHH
Q 024066 152 MAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG---FASKLMAKDLNLALAS 228 (273)
Q Consensus 152 ~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~---f~~~~~~KD~~~~~~~ 228 (273)
.+.++.++.|+ +.+.|+++++..+++..+..+++.+-.. ++.+ |. -.+..-..--...++.
T Consensus 176 ~~~~~~a~~ea---~~~~Gl~~~~a~~~~~~~~~gs~~l~~~------------~~~~-~~~l~~~v~spgG~t~~~l~~ 239 (266)
T PLN02688 176 IFLAIEALADG---GVAAGLPRDVALSLAAQTVLGAAKMVLE------------TGKH-PGQLKDMVTSPGGTTIAGVHE 239 (266)
T ss_pred HHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHh------------cCCC-HHHHHHhCCCCchHHHHHHHH
Confidence 66677888888 8899999999999998876655432100 1111 10 0011112224556778
Q ss_pred HHHhCCCChHHHHHHHHHHHHHHCC
Q 024066 229 AKEVGVDCPLTSQAQDIYAKLCENG 253 (273)
Q Consensus 229 a~~~g~~~~~~~~~~~~~~~a~~~G 253 (273)
.++.|++-.+.++....++++.+.+
T Consensus 240 l~~~g~~~~~~~a~~~~~~r~~~~~ 264 (266)
T PLN02688 240 LEKGGFRAALMNAVVAAAKRSRELS 264 (266)
T ss_pred HHHCChHHHHHHHHHHHHHHHHHhc
Confidence 8889999999999999999988764
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=4e-13 Score=118.57 Aligned_cols=201 Identities=16% Similarity=0.193 Sum_probs=140.5
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhchhhhccC
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKD 83 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~-ST~~P~~~~~l~~~~~~~g~~~~~g 83 (273)
.|++.++++.|++++||+||+||+++ ++.+++. ++.+.. .++++||++ +++++++.+++..
T Consensus 51 ~g~~~~~~~~e~~~~aDvVilav~p~-~~~~vl~---~l~~~~--~~~~liIs~~aGi~~~~l~~~~~------------ 112 (279)
T PRK07679 51 YGVKGTHNKKELLTDANILFLAMKPK-DVAEALI---PFKEYI--HNNQLIISLLAGVSTHSIRNLLQ------------ 112 (279)
T ss_pred cCceEeCCHHHHHhcCCEEEEEeCHH-HHHHHHH---HHHhhc--CCCCEEEEECCCCCHHHHHHHcC------------
Confidence 37888889999999999999999976 4556664 344432 345799996 9999998776331
Q ss_pred CCCCceEEEecCCCC---HHHHhcCceEEEeecC---HHHHHHHHHHHHHhcCCeE------E--eCCcChHHHHHHHHH
Q 024066 84 SWENPVMLDAPVSGG---VLAAEAGTLTFMVGGS---EDAYQAAKPLFLSMGKNTI------Y--CGGAGNGAAAKICNN 149 (273)
Q Consensus 84 ~~~g~~~ldapv~G~---~~~a~~g~l~~~vgG~---~~~~~~~~~~l~~~~~~i~------~--~G~~g~a~~~Kl~~n 149 (273)
. ++||+++ .+.+..+.++++++|+ ++.++.++++|+.+|..++ | +|..|+|.++
T Consensus 113 ----~---~~~v~r~mPn~~~~~~~~~t~~~~~~~~~~~~~~~v~~l~~~~G~~~~v~e~~~~~~~a~~Gsgpa~----- 180 (279)
T PRK07679 113 ----K---DVPIIRAMPNTSAAILKSATAISPSKHATAEHIQTAKALFETIGLVSVVEEEDMHAVTALSGSGPAY----- 180 (279)
T ss_pred ----C---CCeEEEECCCHHHHHhcccEEEeeCCCCCHHHHHHHHHHHHhCCcEEEeCHHHhhhHHHhhcCHHHH-----
Confidence 0 2577766 4466767788999987 5688999999999999766 5 6667777663
Q ss_pred HHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHhhcCCcc-cccccCCCCCCcccCCCCCCCC-CCCcchhhHHHHHHHHH
Q 024066 150 LTMAVSMLGVSEALT-LGQSLGISASTLTKILNSSSARC-WSSDSYNPVPGVMEGVPASRNY-GGGFASKLMAKDLNLAL 226 (273)
Q Consensus 150 ~~~~~~~~~~~Ea~~-la~~~Gl~~~~~~~~l~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~-~~~f~~~~~~KD~~~~~ 226 (273)
+..+.|++. .+.+.|+|.++..+++..+..++ .+......-|. ...+++ +|+|+.. ..+
T Consensus 181 ------~~~~~eal~e~~~~~Gl~~~~a~~~~~~~~~gsa~~~~~~~~~~~-----~l~~~v~spgg~t~-------~gl 242 (279)
T PRK07679 181 ------IYYVVEAMEKAAKKIGLKEDVAKSLILQTMIGAAEMLKASEKHPS-----ILRKEITSPGGTTE-------AGI 242 (279)
T ss_pred ------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHH-----HHHHhcCCCchHHH-------HHH
Confidence 445555555 68999999999999998854332 22211111111 233556 6677643 445
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHHHCC
Q 024066 227 ASAKEVGVDCPLTSQAQDIYAKLCENG 253 (273)
Q Consensus 227 ~~a~~~g~~~~~~~~~~~~~~~a~~~G 253 (273)
+..++.|+.--+.+++..-++++.+-|
T Consensus 243 ~~l~~~~~~~~i~~a~~~a~~r~~~l~ 269 (279)
T PRK07679 243 EVLQEHRFQQALISCITQATQRSHNLG 269 (279)
T ss_pred HHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 566677888888888888888887754
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.1e-12 Score=121.46 Aligned_cols=147 Identities=18% Similarity=0.180 Sum_probs=114.4
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEE-EEcCCCCHHHHHHHHHHHhhchhhhccCCC
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSW 85 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~ii-id~ST~~P~~~~~l~~~~~~~g~~~~~g~~ 85 (273)
++.++++++ +.+||+||.||+++.++++++++. +-.. .+++.++ .|+||++|. ++++.+... ++ .
T Consensus 75 i~~~~~~~~-~~~aDlViEav~E~~~vK~~vf~~--l~~~--~~~~ailasntStl~i~---~la~~~~~p---~r---~ 140 (507)
T PRK08268 75 LRPVEALAD-LADCDLVVEAIVERLDVKQALFAQ--LEAI--VSPDCILATNTSSLSIT---AIAAALKHP---ER---V 140 (507)
T ss_pred eEEeCCHHH-hCCCCEEEEcCcccHHHHHHHHHH--HHhh--CCCCcEEEECCCCCCHH---HHHhhcCCc---cc---E
Confidence 467788876 559999999999999999988752 3222 2345666 499999997 455554320 01 1
Q ss_pred CCceEEE-ecCCCCHHHHhcCceEEEeec---CHHHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHH
Q 024066 86 ENPVMLD-APVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVS 160 (273)
Q Consensus 86 ~g~~~ld-apv~G~~~~a~~g~l~~~vgG---~~~~~~~~~~~l~~~~~~i~~~G~-~g~a~~~Kl~~n~~~~~~~~~~~ 160 (273)
.|.+|++ +|++ .|+.+++| ++++++++.++++.+++..+++|+ +| +++|-+.. ..++
T Consensus 141 ~G~hff~Pa~v~---------~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~pG------fi~Nrll~---~~~~ 202 (507)
T PRK08268 141 AGLHFFNPVPLM---------KLVEVVSGLATDPAVADALYALARAWGKTPVRAKDTPG------FIVNRAAR---PYYT 202 (507)
T ss_pred EEEeecCCcccC---------eeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCCCC------hHHHHHHH---HHHH
Confidence 1489999 8888 58899986 889999999999999999999998 78 35555553 4899
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhcCC
Q 024066 161 EALTLGQSLGISASTLTKILNSSSA 185 (273)
Q Consensus 161 Ea~~la~~~Gl~~~~~~~~l~~~~~ 185 (273)
|++.++++.|++++++-+++..+.+
T Consensus 203 Ea~~l~~~g~~~~~~iD~al~~~~G 227 (507)
T PRK08268 203 EALRVLEEGVADPATIDAILREAAG 227 (507)
T ss_pred HHHHHHHcCCCCHHHHHHHHHhcCC
Confidence 9999999999999999999977544
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-11 Score=108.98 Aligned_cols=147 Identities=18% Similarity=0.169 Sum_probs=108.2
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEE-EEcCCCCHHHHHHHHHHHhhchhhhccCCC
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSW 85 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~ii-id~ST~~P~~~~~l~~~~~~~g~~~~~g~~ 85 (273)
.+.++++.+++++||+||.|+|++.+++..+++ .+.+.. +++.++ +|+||++|.+..+..+.....
T Consensus 69 i~~~~~~~~~~~~aD~Vi~avpe~~~~k~~~~~--~l~~~~--~~~~il~~~tSt~~~~~l~~~~~~~~r~--------- 135 (288)
T PRK09260 69 LSYSLDLKAAVADADLVIEAVPEKLELKKAVFE--TADAHA--PAECYIATNTSTMSPTEIASFTKRPERV--------- 135 (288)
T ss_pred eEEeCcHHHhhcCCCEEEEeccCCHHHHHHHHH--HHHhhC--CCCcEEEEcCCCCCHHHHHhhcCCcccE---------
Confidence 456788999999999999999999988777654 244432 345544 799999998765544321110
Q ss_pred CCceEEEecCCCCHHHHhcCceEEEeec---CHHHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHH
Q 024066 86 ENPVMLDAPVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSE 161 (273)
Q Consensus 86 ~g~~~ldapv~G~~~~a~~g~l~~~vgG---~~~~~~~~~~~l~~~~~~i~~~G~-~g~a~~~Kl~~n~~~~~~~~~~~E 161 (273)
.|.+|+ +|+.++ .|..|++| +++++++++++++.+++.++++|+ +| .+.|-+. ...++|
T Consensus 136 ~g~h~~-~Pv~~~-------~Lve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d~~G------f~~nRl~---~~~~~e 198 (288)
T PRK09260 136 IAMHFF-NPVHKM-------KLVELIRGLETSDETVQVAKEVAEQMGKETVVVNEFPG------FVTSRIS---ALVGNE 198 (288)
T ss_pred EEEecC-CCcccC-------ceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCccc------HHHHHHH---HHHHHH
Confidence 137888 899876 68999999 899999999999999999999998 66 2334433 357789
Q ss_pred HHHHHHHcCCCHHHHHHHHhhc
Q 024066 162 ALTLGQSLGISASTLTKILNSS 183 (273)
Q Consensus 162 a~~la~~~Gl~~~~~~~~l~~~ 183 (273)
++.+.+.--.+++++=..+..+
T Consensus 199 a~~~~~~gv~~~~~iD~~~~~g 220 (288)
T PRK09260 199 AFYMLQEGVATAEDIDKAIRLG 220 (288)
T ss_pred HHHHHHcCCCCHHHHHHHHHhC
Confidence 9999887556787764454433
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.32 E-value=9e-12 Score=111.59 Aligned_cols=141 Identities=17% Similarity=0.174 Sum_probs=113.4
Q ss_pred HHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEE
Q 024066 13 PFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 92 (273)
Q Consensus 13 ~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~~ld 92 (273)
+.+++++||+||-||+.+.+++..+++. +.+.. +++ .|+ +||+|+-...++++.+... ...-|.+|.+
T Consensus 73 ~~~a~~~aD~ViEav~E~~~~K~~~f~~--l~~~~--~~~-~il-aSntS~~~~~~la~~~~~p------~r~~g~Hf~~ 140 (314)
T PRK08269 73 AADALADADLVFEAVPEVLDAKREALRW--LGRHV--DAD-AII-ASTTSTFLVTDLQRHVAHP------ERFLNAHWLN 140 (314)
T ss_pred hHHHhccCCEEEECCcCCHHHHHHHHHH--HHhhC--CCC-cEE-EEccccCCHHHHHhhcCCc------ccEEEEecCC
Confidence 7789999999999999999999988864 54442 344 444 8888888888999877321 1112489999
Q ss_pred ec-------CCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024066 93 AP-------VSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTL 165 (273)
Q Consensus 93 ap-------v~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l 165 (273)
.| |++++ +++++++++++++++.+|+.++++|+.+ | +++...+...++|++.+
T Consensus 141 Pp~~~~lvEVv~g~------------~t~~e~~~~~~~ll~~lGk~~v~v~d~~-G-------fi~nri~~~~l~EAl~l 200 (314)
T PRK08269 141 PAYLMPLVEVSPSD------------ATDPAVVDRLAALLERIGKVPVVCGPSP-G-------YIVPRIQALAMNEAARM 200 (314)
T ss_pred ccccCceEEEeCCC------------CCCHHHHHHHHHHHHHcCCcEEEecCCC-C-------cchHHHHHHHHHHHHHH
Confidence 99 77776 7789999999999999999999999853 2 34566678899999999
Q ss_pred HHHcCCCHHHHHHHHhhcCC
Q 024066 166 GQSLGISASTLTKILNSSSA 185 (273)
Q Consensus 166 a~~~Gl~~~~~~~~l~~~~~ 185 (273)
+++.|++++++.+++..+.+
T Consensus 201 ~e~g~~~~e~iD~a~~~g~G 220 (314)
T PRK08269 201 VEEGVASAEDIDKAIRTGFG 220 (314)
T ss_pred HHhCCCCHHHHHHHHHhCCC
Confidence 99999999999999887654
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-11 Score=117.31 Aligned_cols=146 Identities=17% Similarity=0.171 Sum_probs=110.1
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEE--EcCCCCHHHHHHHHHHHhhchhhhccCC
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLI--DSSTIDPQTSRNISAAVSNCILKEKKDS 84 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iii--d~ST~~P~~~~~l~~~~~~~g~~~~~g~ 84 (273)
++.++++++ +.+||+||.||+++.++++.+++. +... .+++ .|| |+||.++. ++++.+... ..
T Consensus 73 i~~~~~~~~-l~~aDlVIEav~E~~~vK~~vf~~--l~~~--~~~~-~IlasnTStl~i~---~iA~~~~~p------~r 137 (503)
T TIGR02279 73 LIPVTDLHA-LADAGLVIEAIVENLEVKKALFAQ--LEEL--CPAD-TIIASNTSSLSIT---AIAAGLARP------ER 137 (503)
T ss_pred cEEeCCHHH-hCCCCEEEEcCcCcHHHHHHHHHH--HHhh--CCCC-eEEEECCCCCCHH---HHHHhcCcc------cc
Confidence 346778866 469999999999999999987752 3332 2343 555 56666665 455544321 11
Q ss_pred CCCceEEE-ecCCCCHHHHhcCceEEEeec---CHHHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHH
Q 024066 85 WENPVMLD-APVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGV 159 (273)
Q Consensus 85 ~~g~~~ld-apv~G~~~~a~~g~l~~~vgG---~~~~~~~~~~~l~~~~~~i~~~G~-~g~a~~~Kl~~n~~~~~~~~~~ 159 (273)
..|.+|++ +|++ .|+.+++| ++++++++.++++.+++..+++|+ +|. +.|-+. ...+
T Consensus 138 ~~G~HFf~Papv~---------~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d~pGf------i~Nrl~---~~~~ 199 (503)
T TIGR02279 138 VAGLHFFNPAPVM---------ALVEVVSGLATAAEVAEQLYETALAWGKQPVHCHSTPGF------IVNRVA---RPYY 199 (503)
T ss_pred eEEEeccCccccC---------ceEEEeCCCCCCHHHHHHHHHHHHHcCCeeeEeCCCCCc------HHHHHH---HHHH
Confidence 12489999 8998 38999999 899999999999999999999998 774 444444 3699
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhcCC
Q 024066 160 SEALTLGQSLGISASTLTKILNSSSA 185 (273)
Q Consensus 160 ~Ea~~la~~~Gl~~~~~~~~l~~~~~ 185 (273)
.|++.+.++.+++++++-+++..+.+
T Consensus 200 ~EA~~l~e~g~a~~~~ID~al~~~~G 225 (503)
T TIGR02279 200 AEALRALEEQVAAPAVLDAALRDGAG 225 (503)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHhcCC
Confidence 99999999999999999999987544
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.7e-10 Score=97.83 Aligned_cols=153 Identities=15% Similarity=0.272 Sum_probs=109.9
Q ss_pred cCCCC-CCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhcc
Q 024066 4 DMGVP-TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 82 (273)
Q Consensus 4 ~~Ga~-~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~ 82 (273)
+.|+. .+.++.++. +||+||+|+|.+.. .+++.+ +.+ + .++++|+|++|+.+...+.+.+..
T Consensus 43 ~~g~~~~~~~~~~~~-~aD~Vilavp~~~~-~~~~~~---l~~-l--~~~~iv~d~gs~k~~i~~~~~~~~--------- 105 (275)
T PRK08507 43 ELGLVDEIVSFEELK-KCDVIFLAIPVDAI-IEILPK---LLD-I--KENTTIIDLGSTKAKIIESVPKHI--------- 105 (275)
T ss_pred HCCCCcccCCHHHHh-cCCEEEEeCcHHHH-HHHHHH---Hhc-c--CCCCEEEECccchHHHHHHHHHhc---------
Confidence 34553 455777865 49999999998754 445542 444 3 345799999998877766655431
Q ss_pred CCCCCceEEEe-cCCCC----HHHHh----cCceEEEee---cCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHH
Q 024066 83 DSWENPVMLDA-PVSGG----VLAAE----AGTLTFMVG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNL 150 (273)
Q Consensus 83 g~~~g~~~lda-pv~G~----~~~a~----~g~l~~~vg---G~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~ 150 (273)
+..|+.+ |+.|+ |..+. .|...++++ ++++.++.++++++.+|.+++++++.+....+|+++|+
T Consensus 106 ----~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~~~hD~~~a~vs~l 181 (275)
T PRK08507 106 ----RKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMDAKEHDLHAAYISHL 181 (275)
T ss_pred ----CCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeCHHHHHHHHHHHhHH
Confidence 1468888 99885 55443 577777886 45678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 024066 151 TMAVSMLGVSEALTLGQSLGISASTLTKILNS 182 (273)
Q Consensus 151 ~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~ 182 (273)
.. ....++++++. .+.+.+.++++...
T Consensus 182 ph-~~a~~l~~~~~----~~~~~~~~~~~~~~ 208 (275)
T PRK08507 182 PH-IISFALANTVL----KEEDERNIFDLAGG 208 (275)
T ss_pred HH-HHHHHHHHHHH----hcCChHHHHhhccc
Confidence 76 44555666652 36666666565543
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.1e-10 Score=104.12 Aligned_cols=144 Identities=16% Similarity=0.159 Sum_probs=116.8
Q ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceE
Q 024066 11 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVM 90 (273)
Q Consensus 11 ~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~~ 90 (273)
+++.+++.+||+||+|+|.+.. .+++.. +.+ + +++++|+|+||+.+...+++.+.+. ..|
T Consensus 134 ~~~~~~~~~aDlVilavP~~~~-~~~~~~---l~~-l--~~~~iv~Dv~SvK~~~~~~~~~~~~-------------~~f 193 (374)
T PRK11199 134 DRAEDILADAGMVIVSVPIHLT-EEVIAR---LPP-L--PEDCILVDLTSVKNAPLQAMLAAHS-------------GPV 193 (374)
T ss_pred hhHHHHHhcCCEEEEeCcHHHH-HHHHHH---HhC-C--CCCcEEEECCCccHHHHHHHHHhCC-------------CCE
Confidence 4678889999999999999865 555543 443 2 4578999999999988888776431 247
Q ss_pred E-EecCCCCHHHHhcCceEEEeec-CHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024066 91 L-DAPVSGGVLAAEAGTLTFMVGG-SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS 168 (273)
Q Consensus 91 l-dapv~G~~~~a~~g~l~~~vgG-~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~ 168 (273)
+ ..|+.|+......+.+.++++| +++.+++++++++.+|.+++++++.+....+++++-+ .++.+++++..+++
T Consensus 194 vg~HPm~G~~~~~~~~~~vv~~~~~~~~~~~~~~~l~~~lG~~v~~~~~~~HD~~~a~vshL---pH~~a~al~~~l~~- 269 (374)
T PRK11199 194 LGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWLLEQIQVWGARLHRISAVEHDQNMAFIQAL---RHFATFAYGLHLAK- 269 (374)
T ss_pred EeeCCCCCCCCcccCCCEEEEcCCCCchHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-
Confidence 7 8999998777777788888888 5578899999999999999999999999999999933 88889999999987
Q ss_pred cCCCHHHHHH
Q 024066 169 LGISASTLTK 178 (273)
Q Consensus 169 ~Gl~~~~~~~ 178 (273)
.+++.+.+++
T Consensus 270 ~~~~~~~~~~ 279 (374)
T PRK11199 270 ENVDLEQLLA 279 (374)
T ss_pred cCCCHHHHHH
Confidence 7888777644
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.9e-09 Score=94.95 Aligned_cols=118 Identities=17% Similarity=0.223 Sum_probs=83.3
Q ss_pred cccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHH-Hhhchhhh
Q 024066 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAA-VSNCILKE 80 (273)
Q Consensus 2 l~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~-~~~~g~~~ 80 (273)
|.+.|++.++|++|++++||+||+|||+++++++|+ +++++++ +.|++|||+||++|.+..++-+. ++-
T Consensus 64 LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl---~GLaa~L--~~GaIVID~STIsP~t~~~~~e~~l~~----- 133 (341)
T TIGR01724 64 VEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA---RTIIEHV--PENAVICNTCTVSPVVLYYSLEKILRL----- 133 (341)
T ss_pred HHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH---HHHHhcC--CCCCEEEECCCCCHHHHHHHHHHHhhc-----
Confidence 566799999999999999999999999999999998 3577764 56799999999999999997776 321
Q ss_pred ccCCCCCc-eEEEecCCCCHHHHhcCceEEEeec---------CHHHHHHHHHHHHHhcCCeEEe
Q 024066 81 KKDSWENP-VMLDAPVSGGVLAAEAGTLTFMVGG---------SEDAYQAAKPLFLSMGKNTIYC 135 (273)
Q Consensus 81 ~~g~~~g~-~~ldapv~G~~~~a~~g~l~~~vgG---------~~~~~~~~~~~l~~~~~~i~~~ 135 (273)
++. .-|+ .|=-+.|-|.+.+ . ..+++| +++..+++-++.+..++..|.+
T Consensus 134 ~r~-d~~v~s~HP~~vP~~~~~----~-~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~ 192 (341)
T TIGR01724 134 KRT-DVGISSMHPAAVPGTPQH----G-HYVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYVV 192 (341)
T ss_pred Ccc-ccCeeccCCCCCCCCCCC----c-eeeeccccccccccCCHHHHHHHHHHHHHhCCCeeec
Confidence 110 0011 1222334444432 2 222332 3677888888888898876554
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=4e-09 Score=98.70 Aligned_cols=154 Identities=18% Similarity=0.248 Sum_probs=116.8
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCC
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 84 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~ 84 (273)
.|+..++++.+++.+||+||+|+|.+ .+.+++.. +.+.+ .++.+|+|++|+.+...+.+.+.+..
T Consensus 44 ~gv~~~~~~~e~~~~aDvVIlavp~~-~~~~vl~~---l~~~l--~~~~iViDvsSvK~~~~~~l~~~~~~--------- 108 (437)
T PRK08655 44 LGVEYANDNIDAAKDADIVIISVPIN-VTEDVIKE---VAPHV--KEGSLLMDVTSVKERPVEAMEEYAPE--------- 108 (437)
T ss_pred cCCeeccCHHHHhccCCEEEEecCHH-HHHHHHHH---HHhhC--CCCCEEEEcccccHHHHHHHHHhcCC---------
Confidence 46777778899999999999999985 55667643 44442 45689999999999988888876532
Q ss_pred CCCceEEEe-cCCCCHHHHhcCceEEEeec---CHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHH
Q 024066 85 WENPVMLDA-PVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVS 160 (273)
Q Consensus 85 ~~g~~~lda-pv~G~~~~a~~g~l~~~vgG---~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~ 160 (273)
+..|+.+ |+.|.......|+..+++.+ +++.+++++++|+.+|.+++++++. ..-|++.+.....++.+++
T Consensus 109 --~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ll~~~G~~v~~~~~e---~HD~~~a~vs~lph~~a~a 183 (437)
T PRK08655 109 --GVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKNFLEKEGARVIVTSPE---EHDRIMSVVQGLTHFAYIS 183 (437)
T ss_pred --CCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHH---HHHHHHHHHHHHHHHHHHH
Confidence 3689998 99987666667887788766 4678899999999999988887654 4456666666777777777
Q ss_pred HHHHHHHHcCCCHHHHHHH
Q 024066 161 EALTLGQSLGISASTLTKI 179 (273)
Q Consensus 161 Ea~~la~~~Gl~~~~~~~~ 179 (273)
.+..+ ++.|++.+.....
T Consensus 184 l~~~l-~~~g~~~~~~~~~ 201 (437)
T PRK08655 184 IASTL-KRLGVDIKESRKF 201 (437)
T ss_pred HHHHH-HHcCCCHHHHHhh
Confidence 66665 6779998775433
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.6e-09 Score=94.78 Aligned_cols=149 Identities=18% Similarity=0.178 Sum_probs=102.6
Q ss_pred CCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCC
Q 024066 8 PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWEN 87 (273)
Q Consensus 8 ~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g 87 (273)
+.++++.+++++||+||+|+|.+.++...++.. +... .++.++|.++|.++.. .++++.+... .+ ..+
T Consensus 68 ~~~~~~~~~~~~aDlVi~av~~~~~~~~~v~~~--l~~~---~~~~~ii~s~tsg~~~-~~l~~~~~~~----~~--~ig 135 (311)
T PRK06130 68 RMEAGLAAAVSGADLVIEAVPEKLELKRDVFAR--LDGL---CDPDTIFATNTSGLPI-TAIAQAVTRP----ER--FVG 135 (311)
T ss_pred EEeCCHHHHhccCCEEEEeccCcHHHHHHHHHH--HHHh---CCCCcEEEECCCCCCH-HHHHhhcCCc----cc--EEE
Confidence 456788888999999999999987654433321 2221 1234566677766653 3666665321 00 002
Q ss_pred ceEEEecCCCCHHHHhcCceEEEeec---CHHHHHHHHHHHHHhcCCeEEeCC--cChHHHHHHHHHHHHHHHHHHHHHH
Q 024066 88 PVMLDAPVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEA 162 (273)
Q Consensus 88 ~~~ldapv~G~~~~a~~g~l~~~vgG---~~~~~~~~~~~l~~~~~~i~~~G~--~g~a~~~Kl~~n~~~~~~~~~~~Ea 162 (273)
++|.++|.. +.+..++.| +++.++.++++++.+|+.++++++ +|. ++||++. ..++|+
T Consensus 136 ~h~~~p~~~--------~~l~~i~~g~~t~~~~~~~v~~l~~~~G~~~v~~~~d~~G~-----i~nr~~~----~~~~Ea 198 (311)
T PRK06130 136 THFFTPADV--------IPLVEVVRGDKTSPQTVATTMALLRSIGKRPVLVKKDIPGF-----IANRIQH----ALAREA 198 (311)
T ss_pred EccCCCCcc--------CceEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEEcCCCCCc-----HHHHHHH----HHHHHH
Confidence 444444422 234556666 578999999999999999999985 565 7888753 679999
Q ss_pred HHHHHHcCCCHHHHHHHHhhcCC
Q 024066 163 LTLGQSLGISASTLTKILNSSSA 185 (273)
Q Consensus 163 ~~la~~~Gl~~~~~~~~l~~~~~ 185 (273)
+.++++.|++++++.++++.+.+
T Consensus 199 ~~l~~~g~~~~~~id~~~~~~~g 221 (311)
T PRK06130 199 ISLLEKGVASAEDIDEVVKWSLG 221 (311)
T ss_pred HHHHHcCCCCHHHHHHHHHhcCC
Confidence 99999999999999999986654
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.3e-08 Score=87.30 Aligned_cols=128 Identities=18% Similarity=0.235 Sum_probs=94.0
Q ss_pred CHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEE
Q 024066 12 TPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML 91 (273)
Q Consensus 12 s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~~l 91 (273)
+..+++++||+||+|+|.+.. .+++. .+.+.+ .++.+|+|++++.+...+++.+.. ..|+
T Consensus 50 ~~~~~~~~aDlVilavp~~~~-~~~~~---~l~~~l--~~~~ii~d~~Svk~~~~~~~~~~~--------------~~~v 109 (279)
T PRK07417 50 TDLSLLKDCDLVILALPIGLL-LPPSE---QLIPAL--PPEAIVTDVGSVKAPIVEAWEKLH--------------PRFV 109 (279)
T ss_pred CCHhHhcCCCEEEEcCCHHHH-HHHHH---HHHHhC--CCCcEEEeCcchHHHHHHHHHHhh--------------CCce
Confidence 334678899999999997654 45553 344432 345799999999988766555421 2477
Q ss_pred E-ecCCCCH-HHHhcCceEEEee----------cCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHH
Q 024066 92 D-APVSGGV-LAAEAGTLTFMVG----------GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGV 159 (273)
Q Consensus 92 d-apv~G~~-~~a~~g~l~~~vg----------G~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~ 159 (273)
. .|+.|++ .+.+.+...+|.| ++++.++.++++++.+|.+++++++.+....+|+++|+......+.+
T Consensus 110 ~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v~~l~~~lG~~~v~~~~~~hD~~~a~~shlp~~~a~~l~ 189 (279)
T PRK07417 110 GSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAIVEELAVSLGSKIYTADPEEHDRAVALISHLPVMVSAALI 189 (279)
T ss_pred eeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHcchHHHHHHHHH
Confidence 7 6999986 4555444333333 57788999999999999999999999999999999998877654443
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.4e-09 Score=92.11 Aligned_cols=145 Identities=17% Similarity=0.162 Sum_probs=103.1
Q ss_pred CCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCCCC
Q 024066 9 TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWEN 87 (273)
Q Consensus 9 ~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iii-d~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g 87 (273)
...+..+++++||+||.||+++.+++..+++. +.+.. +++.+|+ ++||+++.+.++....-.. ..+
T Consensus 73 ~~~~~~~~~~~aD~Vieav~e~~~~k~~v~~~--l~~~~--~~~~il~s~tS~i~~~~l~~~~~~~~r---------~~g 139 (295)
T PLN02545 73 RCTTNLEELRDADFIIEAIVESEDLKKKLFSE--LDRIC--KPSAILASNTSSISITRLASATQRPQQ---------VIG 139 (295)
T ss_pred EeeCCHHHhCCCCEEEEcCccCHHHHHHHHHH--HHhhC--CCCcEEEECCCCCCHHHHHhhcCCCcc---------eEE
Confidence 34445577899999999999999998887653 44332 3455665 9999998876554331110 113
Q ss_pred ceEEEecCCCCHHHHhcCceEEEeec---CHHHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHH
Q 024066 88 PVMLDAPVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEAL 163 (273)
Q Consensus 88 ~~~ldapv~G~~~~a~~g~l~~~vgG---~~~~~~~~~~~l~~~~~~i~~~G~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~ 163 (273)
++|.++|..+ .++.++.| +++++++++++|+.+|+.++++++ +| .++|+++. ..++|++
T Consensus 140 ~h~~~pp~~~--------~lveiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~~g-----~i~nri~~----~~~~ea~ 202 (295)
T PLN02545 140 MHFMNPPPIM--------KLVEIIRGADTSDEVFDATKALAERFGKTVVCSQDYPG-----FIVNRILM----PMINEAF 202 (295)
T ss_pred EeccCCcccC--------ceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCccc-----HHHHHHHH----HHHHHHH
Confidence 7899999864 44566654 788999999999999999999988 56 34555443 4589999
Q ss_pred HHHHHcCCCHHHHHHHHhhc
Q 024066 164 TLGQSLGISASTLTKILNSS 183 (273)
Q Consensus 164 ~la~~~Gl~~~~~~~~l~~~ 183 (273)
.+.++...+++++=..+..+
T Consensus 203 ~~~~~gv~~~~~iD~~~~~g 222 (295)
T PLN02545 203 YALYTGVASKEDIDTGMKLG 222 (295)
T ss_pred HHHHcCCCCHHHHHHHHHhc
Confidence 99998778888765555433
|
|
| >PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.5e-08 Score=70.79 Aligned_cols=93 Identities=22% Similarity=0.213 Sum_probs=74.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhH
Q 024066 139 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLM 218 (273)
Q Consensus 139 g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 218 (273)
..|..+|++.|.+....++.++|...+|++.|+|..++.+.++... ++.. ..+ .-.++|...++
T Consensus 2 ~~AEl~K~~~N~~~a~~iaf~Nel~~lce~~giD~~~V~~~~~~d~---ri~~------~~~-------~pg~g~GG~Cl 65 (96)
T PF00984_consen 2 EEAELIKYAENAFRATKIAFANELARLCEKLGIDVYEVIEAANTDP---RIGP------HYL-------RPGPGFGGSCL 65 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHHTST---TTTS------SS--------S-SSS--SSCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCc---cccc------ccC-------CCCCCCCCcch
Confidence 3689999999999999999999999999999999999999998742 1110 000 01235778899
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 024066 219 AKDLNLALASAKEVGVDCPLTSQAQDIYA 247 (273)
Q Consensus 219 ~KD~~~~~~~a~~~g~~~~~~~~~~~~~~ 247 (273)
.||...+...+++.|.+..+++++.+.-+
T Consensus 66 pkD~~~L~~~~~~~g~~~~ll~~~~~~N~ 94 (96)
T PF00984_consen 66 PKDPYALIYLAKELGYPPQLLEAVININE 94 (96)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHcCCCHHHHHHHHHhcC
Confidence 99999999999999999999999887654
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A .... |
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.2e-08 Score=86.07 Aligned_cols=147 Identities=18% Similarity=0.145 Sum_probs=98.4
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCC
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSW 85 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iii-d~ST~~P~~~~~l~~~~~~~g~~~~~g~~ 85 (273)
.+.+++.. .+++||+||.|+|++.+++..++. ++.+.+ +.+++|+ ++||+++. ++++.+... .+ .
T Consensus 72 i~~~~~~~-~~~~aD~Vieavpe~~~~k~~~~~--~l~~~~--~~~~ii~s~ts~~~~s---~la~~~~~~---~r---~ 137 (292)
T PRK07530 72 ISTATDLE-DLADCDLVIEAATEDETVKRKIFA--QLCPVL--KPEAILATNTSSISIT---RLASATDRP---ER---F 137 (292)
T ss_pred eEeeCCHH-HhcCCCEEEEcCcCCHHHHHHHHH--HHHhhC--CCCcEEEEcCCCCCHH---HHHhhcCCc---cc---E
Confidence 34566764 578999999999998887666553 354442 3456666 78887775 466654210 00 1
Q ss_pred CCceEEE-ecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHH
Q 024066 86 ENPVMLD-APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALT 164 (273)
Q Consensus 86 ~g~~~ld-apv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~ 164 (273)
.|++|++ +|+++.. .+..-.+++++++++++++++.+|+.++++++.+ -|++|+++ ...+.|++.
T Consensus 138 ~g~h~~~p~~~~~~v------ei~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d~p----g~i~nRl~----~~~~~ea~~ 203 (292)
T PRK07530 138 IGIHFMNPVPVMKLV------ELIRGIATDEATFEAAKEFVTKLGKTITVAEDFP----AFIVNRIL----LPMINEAIY 203 (292)
T ss_pred EEeeccCCcccCceE------EEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcC----ChHHHHHH----HHHHHHHHH
Confidence 1378888 5555332 1222246889999999999999999999998844 57777775 455788888
Q ss_pred HHHHcCCCHHHHHHHHh
Q 024066 165 LGQSLGISASTLTKILN 181 (273)
Q Consensus 165 la~~~Gl~~~~~~~~l~ 181 (273)
+.++-=.+++++=.++.
T Consensus 204 ~~~~g~~~~~~iD~~~~ 220 (292)
T PRK07530 204 TLYEGVGSVEAIDTAMK 220 (292)
T ss_pred HHHhCCCCHHHHHHHHH
Confidence 88883336776544544
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.6e-07 Score=81.96 Aligned_cols=144 Identities=17% Similarity=0.153 Sum_probs=100.1
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCC
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 85 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~ 85 (273)
|++.++++.++++++|+||+|++ ++++.+++.. + . . .++++||+ +..+-+.+.+.+.+...
T Consensus 48 ~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~~---l-~-~--~~~~~vis--~~ag~~~~~l~~~~~~~--------- 108 (258)
T PRK06476 48 KVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLRA---L-R-F--RPGQTVIS--VIAATDRAALLEWIGHD--------- 108 (258)
T ss_pred CceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHHH---h-c-c--CCCCEEEE--ECCCCCHHHHHHHhCCC---------
Confidence 56778899999999999999999 6778888853 2 1 1 24567776 44556666777766421
Q ss_pred CCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHH-----HHHHHHHHHH
Q 024066 86 ENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNL-----TMAVSMLGVS 160 (273)
Q Consensus 86 ~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~-----~~~~~~~~~~ 160 (273)
...+...|.. +.+....++.+++++ +.++++|+.+|..++ +++. |..+++ +....+..+.
T Consensus 109 -~~~~r~~P~~---~~a~~~g~t~~~~~~----~~~~~l~~~lG~~~~-~~~e------~~~d~~~a~~s~~a~~~~~~~ 173 (258)
T PRK06476 109 -VKLVRAIPLP---FVAERKGVTAIYPPD----PFVAALFDALGTAVE-CDSE------EEYDLLAAASALMATYFGILE 173 (258)
T ss_pred -CCEEEECCCC---hhhhCCCCeEecCCH----HHHHHHHHhcCCcEE-ECCh------HhccceeehhccHHHHHHHHH
Confidence 1457788883 333333446666664 578999999998654 6533 333333 4455556778
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhc
Q 024066 161 EALTLGQSLGISASTLTKILNSS 183 (273)
Q Consensus 161 Ea~~la~~~Gl~~~~~~~~l~~~ 183 (273)
++..++++.|+++++..+++...
T Consensus 174 ~~~~~~~~~Gl~~~~a~~~~~~~ 196 (258)
T PRK06476 174 TATGWLEEQGLKRQKARAYLAPL 196 (258)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHH
Confidence 88899999999999988888754
|
|
| >KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.7e-06 Score=75.88 Aligned_cols=197 Identities=14% Similarity=0.190 Sum_probs=136.2
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHH-----------HHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchh
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLD-----------VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCIL 78 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~-----------v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~ 78 (273)
.++...++..+|+||++|-+|.-... +-....-+.+. ..+.+++++-||+...+++.+...+...
T Consensus 69 stdiekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~--s~~~kivvekstvpv~aaesi~~il~~n-- 144 (481)
T KOG2666|consen 69 STDIEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADV--SVSDKIVVEKSTVPVKAAESIEKILNHN-- 144 (481)
T ss_pred ecchHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHh--ccCCeEEEeeccccchHHHHHHHHHhcC--
Confidence 45678899999999999988753211 10000112222 2356899999999999999999988421
Q ss_pred hhccCCCCCceEEEecCCCCHHHHhcCce--------EEEeecCH--HH---HHHHHHHHHHhcCC-eEEeCCcChHHHH
Q 024066 79 KEKKDSWENPVMLDAPVSGGVLAAEAGTL--------TFMVGGSE--DA---YQAAKPLFLSMGKN-TIYCGGAGNGAAA 144 (273)
Q Consensus 79 ~~~~g~~~g~~~ldapv~G~~~~a~~g~l--------~~~vgG~~--~~---~~~~~~~l~~~~~~-i~~~G~~g~a~~~ 144 (273)
+. |+.| .|...|.-..+|+. .+++||++ +- .+.+..+++.+-.+ -+..-..=++..-
T Consensus 145 --~~----~i~f---qilsnpeflaegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwssels 215 (481)
T KOG2666|consen 145 --SK----GIKF---QILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELS 215 (481)
T ss_pred --CC----Ccee---EeccChHHhcccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHH
Confidence 22 2332 34444444444443 58999963 43 44556667776543 2223446789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHH
Q 024066 145 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNL 224 (273)
Q Consensus 145 Kl~~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~ 224 (273)
||+.|.+++--+..++-.-++|++.|-|..++...+... +.+.. +.+ +-+.+|..+++.||+-.
T Consensus 216 klaanaflaqrissins~salceatgadv~eva~avg~d---~rig~------kfl-------~asvgfggscfqkdiln 279 (481)
T KOG2666|consen 216 KLAANAFLAQRISSINSMSALCEATGADVSEVAYAVGTD---SRIGS------KFL-------NASVGFGGSCFQKDILN 279 (481)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCHHHHHHHhccc---ccccH------HHh-------hcccCcCchhHHHHHHH
Confidence 999999999999999999999999999999988777543 22211 111 11457899999999999
Q ss_pred HHHHHHHhCCC
Q 024066 225 ALASAKEVGVD 235 (273)
Q Consensus 225 ~~~~a~~~g~~ 235 (273)
.+-.++.+|+|
T Consensus 280 lvyice~lnlp 290 (481)
T KOG2666|consen 280 LVYICECLNLP 290 (481)
T ss_pred HHHHHhcCCCh
Confidence 99999999876
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.4e-07 Score=80.41 Aligned_cols=147 Identities=14% Similarity=0.027 Sum_probs=105.8
Q ss_pred CCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCC-CCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCC
Q 024066 9 TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNS-VRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWEN 87 (273)
Q Consensus 9 ~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~-~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g 87 (273)
.+++. +.+++||+||-|+|++.+++..+++ .++.. . +++.+++..||+.|-+.........++ .-|
T Consensus 75 ~~~~~-~~~~~~d~ViEav~E~~~~K~~l~~---~l~~~-~~~~~~il~snTS~~~~~~la~~~~~~~r--------~~g 141 (286)
T PRK07819 75 FTTDL-GDFADRQLVIEAVVEDEAVKTEIFA---ELDKV-VTDPDAVLASNTSSIPIMKLAAATKRPGR--------VLG 141 (286)
T ss_pred eeCCH-HHhCCCCEEEEecccCHHHHHHHHH---HHHHh-hCCCCcEEEECCCCCCHHHHHhhcCCCcc--------EEE
Confidence 57777 6689999999999999999988875 33322 2 356788887777777765543332221 013
Q ss_pred ceEEE-ecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHH-HhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHH
Q 024066 88 PVMLD-APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFL-SMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALT 164 (273)
Q Consensus 88 ~~~ld-apv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~-~~~~~i~~~G~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~ 164 (273)
.+|.+ +|+++.+ ++....++++++++++.+++. .+++..+++++ +|- +.|-+ ....++|++.
T Consensus 142 ~hf~~P~~~~~lv------Elv~~~~T~~~~~~~~~~~~~~~lgk~pv~v~d~pGf------i~nRi---~~~~~~Ea~~ 206 (286)
T PRK07819 142 LHFFNPVPVLPLV------ELVPTLVTSEATVARAEEFASDVLGKQVVRAQDRSGF------VVNAL---LVPYLLSAIR 206 (286)
T ss_pred EecCCCcccCceE------EEeCCCCCCHHHHHHHHHHHHHhCCCCceEecCCCCh------HHHHH---HHHHHHHHHH
Confidence 78888 6788776 677778889999999999988 59999999988 762 33433 3567789999
Q ss_pred HHHHcCCCHHHHHHHHhhc
Q 024066 165 LGQSLGISASTLTKILNSS 183 (273)
Q Consensus 165 la~~~Gl~~~~~~~~l~~~ 183 (273)
+.++.-.+++++=.++..+
T Consensus 207 ll~eGv~~~~dID~~~~~g 225 (286)
T PRK07819 207 MVESGFATAEDIDKAMVLG 225 (286)
T ss_pred HHHhCCCCHHHHHHHHHhC
Confidence 8887666788765555444
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.9e-05 Score=69.46 Aligned_cols=124 Identities=10% Similarity=0.173 Sum_probs=85.1
Q ss_pred CCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCc
Q 024066 9 TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENP 88 (273)
Q Consensus 9 ~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~ 88 (273)
.+.++.+++++||+||+|+|.+. ..+++.. +.+.+ ..+.+|+|++++.+...+++.+.+.. ++
T Consensus 56 ~~~~~~~~~~~aDvViiavp~~~-~~~v~~~---l~~~l--~~~~iv~dvgs~k~~~~~~~~~~~~~-----------~~ 118 (307)
T PRK07502 56 VTTSAAEAVKGADLVILCVPVGA-SGAVAAE---IAPHL--KPGAIVTDVGSVKASVIAAMAPHLPE-----------GV 118 (307)
T ss_pred ecCCHHHHhcCCCEEEECCCHHH-HHHHHHH---HHhhC--CCCCEEEeCccchHHHHHHHHHhCCC-----------CC
Confidence 45678888999999999999864 4556542 33322 34578999999998888777655421 36
Q ss_pred eEEEe-cCCCCHH-HHh-------cCceEEEe---ecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHH
Q 024066 89 VMLDA-PVSGGVL-AAE-------AGTLTFMV---GGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNN 149 (273)
Q Consensus 89 ~~lda-pv~G~~~-~a~-------~g~l~~~v---gG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n 149 (273)
+|+.+ |+.|+.. +.. .|...+++ +++++.++.++++++.+|.+++++++-..-..+=++..
T Consensus 119 ~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~~~~~hD~~~A~~s~ 191 (307)
T PRK07502 119 HFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDPAAVARLTAFWRALGARVEEMDPEHHDLVLAITSH 191 (307)
T ss_pred eEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHhHHHHHHhh
Confidence 89997 9988542 222 23323333 56788999999999999999888876444444434433
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.3e-06 Score=74.29 Aligned_cols=153 Identities=15% Similarity=0.142 Sum_probs=97.1
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCC
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 85 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~ 85 (273)
|++...++.+++.++|+||+|+++ .++.+++.. +.+.+ .++++||+++..- ..+++.+++..+
T Consensus 49 g~~~~~~~~~~~~~aDiVilav~p-~~~~~vl~~---l~~~l--~~~~~iis~~ag~--~~~~L~~~~~~~--------- 111 (273)
T PRK07680 49 GIHVAKTIEEVISQSDLIFICVKP-LDIYPLLQK---LAPHL--TDEHCLVSITSPI--SVEQLETLVPCQ--------- 111 (273)
T ss_pred CeEEECCHHHHHHhCCEEEEecCH-HHHHHHHHH---HHhhc--CCCCEEEEECCCC--CHHHHHHHcCCC---------
Confidence 677788999999999999999984 567888753 44432 2457889888643 355565554321
Q ss_pred CCceEEEecCCCCHHHHhcCceEEEee--cCHHHHHHHHHHHHHhcCCeEEeCC-cChHH-HHHHHHHHHHHHHHHHHHH
Q 024066 86 ENPVMLDAPVSGGVLAAEAGTLTFMVG--GSEDAYQAAKPLFLSMGKNTIYCGG-AGNGA-AAKICNNLTMAVSMLGVSE 161 (273)
Q Consensus 86 ~g~~~ldapv~G~~~~a~~g~l~~~vg--G~~~~~~~~~~~l~~~~~~i~~~G~-~g~a~-~~Kl~~n~~~~~~~~~~~E 161 (273)
.++++. +.+..+..|...++.| .+++.++.++++|+.+|. .+++.+ .-.+. .+=-+.-.+....+.++.+
T Consensus 112 -~~r~~p----~~~~~~~~G~t~~~~g~~~~~~~~~~~~~ll~~~G~-~~~i~e~~~~~~~~l~gs~pa~~~~~~~al~~ 185 (273)
T PRK07680 112 -VARIIP----SITNRALSGASLFTFGSRCSEEDQQKLERLFSNIST-PLVIEEDITRVSSDIVSCGPAFFSYLLQRFID 185 (273)
T ss_pred -EEEECC----ChHHHHhhccEEEeeCCCCCHHHHHHHHHHHHcCCC-EEEEChHhcchhhhhccchHHHHHHHHHHHHH
Confidence 134543 3455566788666666 356778999999999995 677765 22222 1111122344444455555
Q ss_pred HHHHHHHcCCCHHHHHHHHhhc
Q 024066 162 ALTLGQSLGISASTLTKILNSS 183 (273)
Q Consensus 162 a~~la~~~Gl~~~~~~~~l~~~ 183 (273)
+. .++.|++.++..+++...
T Consensus 186 ~~--~~~~Gl~~~~a~~~~~~~ 205 (273)
T PRK07680 186 AA--VEETNISKEEATTLASEM 205 (273)
T ss_pred HH--HHhcCCCHHHHHHHHHHH
Confidence 43 244899999877776654
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.6e-07 Score=79.90 Aligned_cols=147 Identities=14% Similarity=0.125 Sum_probs=98.2
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCce
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPV 89 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~ 89 (273)
.++. +++++||+||.|+|.+..++..++.. +.+.. +++.+++ |+++.-...++++.+... .+ .-|.+
T Consensus 77 ~~~~-~~~~~aDlVieav~e~~~~k~~~~~~--l~~~~--~~~~il~--S~tsg~~~~~la~~~~~~---~r---~ig~h 143 (291)
T PRK06035 77 STSY-ESLSDADFIVEAVPEKLDLKRKVFAE--LERNV--SPETIIA--SNTSGIMIAEIATALERK---DR---FIGMH 143 (291)
T ss_pred eCCH-HHhCCCCEEEEcCcCcHHHHHHHHHH--HHhhC--CCCeEEE--EcCCCCCHHHHHhhcCCc---cc---EEEEe
Confidence 3444 67899999999999998766655431 33321 3444544 334434555777766321 00 11377
Q ss_pred EEE-ecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024066 90 MLD-APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS 168 (273)
Q Consensus 90 ~ld-apv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~ 168 (273)
|.+ +|+++... +..|..+ ++++++++.++++.+++.++++++.+....-|+++|+ +.|++.+.+.
T Consensus 144 f~~P~~~~~~vE-v~~g~~T-----~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~--------~~ea~~~~~~ 209 (291)
T PRK06035 144 WFNPAPVMKLIE-VVRAALT-----SEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGW--------LLEAIRSFEI 209 (291)
T ss_pred cCCCcccCccEE-EeCCCCC-----CHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHH--------HHHHHHHHHc
Confidence 888 77887754 3344443 7899999999999999999999997778888998885 5677888766
Q ss_pred cCCCHHHHHHHHhhc
Q 024066 169 LGISASTLTKILNSS 183 (273)
Q Consensus 169 ~Gl~~~~~~~~l~~~ 183 (273)
--.+++++=.++..+
T Consensus 210 g~a~~~~iD~~~~~~ 224 (291)
T PRK06035 210 GIATIKDIDEMCKLA 224 (291)
T ss_pred CCCCHHHHHHHHhhc
Confidence 335677754454443
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.6e-06 Score=76.97 Aligned_cols=147 Identities=12% Similarity=0.129 Sum_probs=99.0
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCccc-CCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCc
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQ-GGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENP 88 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~-~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~ 88 (273)
.+++.+++++||+||+|+|.. .+.+++.. +.+ .+ .++.+|.|.+++.....+++.+.+.. +.
T Consensus 51 ~~~~~~~~~~aDlVilavP~~-~~~~vl~~---l~~~~l--~~~~ivtDv~SvK~~i~~~~~~~~~~-----------~~ 113 (359)
T PRK06545 51 AADLQRAAAEADLIVLAVPVD-ATAALLAE---LADLEL--KPGVIVTDVGSVKGAILAEAEALLGD-----------LI 113 (359)
T ss_pred ccCHHHHhcCCCEEEEeCCHH-HHHHHHHH---HhhcCC--CCCcEEEeCccccHHHHHHHHHhcCC-----------CC
Confidence 356788899999999999985 66778753 332 12 34579999999999888877765321 26
Q ss_pred eEEE-ecCCCCHH--------HHhcCceEEEee---cCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHH
Q 024066 89 VMLD-APVSGGVL--------AAEAGTLTFMVG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSM 156 (273)
Q Consensus 89 ~~ld-apv~G~~~--------~a~~g~l~~~vg---G~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~ 156 (273)
.|+. .|+.|+.. ..-.|...+++. .+++.++.++++++.+|..++++.+-..-..+-++..+-..
T Consensus 114 ~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~--- 190 (359)
T PRK06545 114 RFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDAVAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHI--- 190 (359)
T ss_pred eEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHH---
Confidence 7998 69988731 222344456665 46788999999999999988889765555555555444332
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHH
Q 024066 157 LGVSEALTLGQSLGISASTLTKIL 180 (273)
Q Consensus 157 ~~~~Ea~~la~~~Gl~~~~~~~~l 180 (273)
+++++ +...+.+.+....+.
T Consensus 191 --ia~al--~~~~~~~~~~~~~la 210 (359)
T PRK06545 191 --LASSL--AARLAGEHPLALRLA 210 (359)
T ss_pred --HHHHH--HHhhccCchHHHhhh
Confidence 22222 566666665544443
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.7e-05 Score=68.12 Aligned_cols=209 Identities=15% Similarity=0.166 Sum_probs=122.7
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCC
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 85 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~ 85 (273)
|....+++.+++.++|+||+|++++ ++++++.. +.+. . +++||.++..-+. ..+.+.+..
T Consensus 49 g~~~~~~~~~~~~~advVil~v~~~-~~~~v~~~---l~~~---~-~~~vvs~~~gi~~--~~l~~~~~~---------- 108 (267)
T PRK11880 49 GVRAATDNQEAAQEADVVVLAVKPQ-VMEEVLSE---LKGQ---L-DKLVVSIAAGVTL--ARLERLLGA---------- 108 (267)
T ss_pred CCeecCChHHHHhcCCEEEEEcCHH-HHHHHHHH---HHhh---c-CCEEEEecCCCCH--HHHHHhcCC----------
Confidence 6777889999999999999999865 67888753 3332 1 3466655554443 234444321
Q ss_pred CCceEEEecCCCCHHHHhcCceEEEeec--CHHHHHHHHHHHHHhcCCeEEeCC-c--ChHHHHHHHHHHHHHHHHHHHH
Q 024066 86 ENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKPLFLSMGKNTIYCGG-A--GNGAAAKICNNLTMAVSMLGVS 160 (273)
Q Consensus 86 ~g~~~ldapv~G~~~~a~~g~l~~~vgG--~~~~~~~~~~~l~~~~~~i~~~G~-~--g~a~~~Kl~~n~~~~~~~~~~~ 160 (273)
+.+++. -+...|.....+...++.+. +++.++.++.+|+.+|. .+++.+ . -.+..+ ..+ .-..+..+.
T Consensus 109 -~~~iv~-~~P~~p~~~~~~~~~i~~~~~~~~~~~~~v~~l~~~lG~-~~~~~~e~~~d~~~a~--~~~--~pa~~~~~~ 181 (267)
T PRK11880 109 -DLPVVR-AMPNTPALVGAGMTALTANALVSAEDRELVENLLSAFGK-VVWVDDEKQMDAVTAV--SGS--GPAYVFLFI 181 (267)
T ss_pred -CCcEEE-ecCCchHHHcCceEEEecCCCCCHHHHHHHHHHHHhCCe-EEEECChHhcchHHHH--hcC--hHHHHHHHH
Confidence 134444 23344555555554455554 67889999999999997 667763 2 222211 111 111233445
Q ss_pred HHHH-HHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCC--cchhhHHHHHHHHHHHHHHhCCCCh
Q 024066 161 EALT-LGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG--FASKLMAKDLNLALASAKEVGVDCP 237 (273)
Q Consensus 161 Ea~~-la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--f~~~~~~KD~~~~~~~a~~~g~~~~ 237 (273)
|++. .+.+.|+++++..+++....-+. .+ ++. ..+.+... -.+..-..-....++.+++.|++-.
T Consensus 182 ~~~~~~~~~~Gl~~~~a~~~~~~~~~g~--~~-------~~~---~~~~~~~~l~~~v~tpgG~t~~gl~~l~~~g~~~~ 249 (267)
T PRK11880 182 EALADAGVKLGLPREQARKLAAQTVLGA--AK-------LLL---ESGEHPAELRDNVTSPGGTTIAALRVLEEKGLRAA 249 (267)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHH--HH-------HHH---hcCCCHHHHHHhCCCCcHHHHHHHHHHHHCCHHHH
Confidence 5554 46779999999888776642111 01 110 01111000 0111112234567778888999999
Q ss_pred HHHHHHHHHHHHHHCC
Q 024066 238 LTSQAQDIYAKLCENG 253 (273)
Q Consensus 238 ~~~~~~~~~~~a~~~G 253 (273)
+.++..+.++++.+.+
T Consensus 250 ~~~a~~~~~~ra~~~~ 265 (267)
T PRK11880 250 VIEAVQAAAKRSKELG 265 (267)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998754
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=7.4e-05 Score=67.90 Aligned_cols=234 Identities=13% Similarity=0.112 Sum_probs=127.2
Q ss_pred CCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhchhhhccCCCC
Q 024066 8 PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNCILKEKKDSWE 86 (273)
Q Consensus 8 ~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~S-T~~P~~~~~l~~~~~~~g~~~~~g~~~ 86 (273)
...+++.++++++|+||+|+|. ..+++++.. +.+.+ .+..++|.++ .+.+++.+.+.+.+.+. + ++ .
T Consensus 66 ~~t~d~~~a~~~aDlVilavps-~~~~~vl~~---i~~~l--~~~~~vIsl~kGi~~~t~~~~se~i~~~-l---~~--~ 133 (341)
T PRK12439 66 RATTDFAEAANCADVVVMGVPS-HGFRGVLTE---LAKEL--RPWVPVVSLVKGLEQGTNMRMSQIIEEV-L---PG--H 133 (341)
T ss_pred EEECCHHHHHhcCCEEEEEeCH-HHHHHHHHH---HHhhc--CCCCEEEEEEeCCcCCCCCcHHHHHHHH-c---CC--C
Confidence 4566788899999999999995 467888764 33322 2233444444 44444444444444331 0 00 0
Q ss_pred CceEEEecCCCCHHHHhcCceE-EEeec-CHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHH------------
Q 024066 87 NPVMLDAPVSGGVLAAEAGTLT-FMVGG-SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM------------ 152 (273)
Q Consensus 87 g~~~ldapv~G~~~~a~~g~l~-~~vgG-~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~------------ 152 (273)
....+-.| +-......|..+ +.+++ +++..+.++.+|..-+-+++...++-.-+..|.+-|.+.
T Consensus 134 ~~~~l~GP--~~a~ev~~g~~t~~via~~~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~g 211 (341)
T PRK12439 134 PAGILAGP--NIAREVAEGYAAAAVLAMPDQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIG 211 (341)
T ss_pred CeEEEECC--CHHHHHHcCCCeEEEEEeCCHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 02223333 111222235433 33344 445556666666554433443344555666666655543
Q ss_pred -----HHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCC--CcccCCCCCCCCCCCcchhh--------
Q 024066 153 -----AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVP--GVMEGVPASRNYGGGFASKL-------- 217 (273)
Q Consensus 153 -----~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~--~~~~~~~~~~~~~~~f~~~~-------- 217 (273)
.....++.|+..++++.|.++++++....-+ + .+..-..+.. ..+...+..| .+++-
T Consensus 212 ~n~~aali~~~~~E~~~~~~a~G~~~~t~~gl~G~G--D-l~~Tc~s~~sRN~~~G~~l~~g-----~~~~~~~~~~~~~ 283 (341)
T PRK12439 212 ENTRAMVIARALREMTKLGVAMGGNPETFAGLAGMG--D-LIVTCTSQRSRNRHVGEQLGAG-----KPIDEIIASMNQV 283 (341)
T ss_pred chHHHHHHHHHHHHHHHHHHHhCCCcccccccchhh--h-hhhhccCCCCccHHHHHHHHCC-----CCHHHHHHhcCCE
Confidence 3345678899999999999998876532211 0 0000000000 0000011111 11111
Q ss_pred --HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhcCC
Q 024066 218 --MAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGK 270 (273)
Q Consensus 218 --~~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~G~g~~d~sai~~~~~~~~ 270 (273)
-..-.+.+.+++++.++++|+++.+.+++ |++.|...+++.+..++
T Consensus 284 ~EG~~~~~~~~~~~~~~~~~~Pi~~~~~~il-------~~~~~~~~~~~~l~~~~ 331 (341)
T PRK12439 284 AEGVKAASVVMEFADEYGLNMPIAREVDAVI-------NHGSTVEQAYRGLIAEV 331 (341)
T ss_pred EehHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------hCCCCHHHHHHHHhcCC
Confidence 24456677889999999999999999887 67788888887775543
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.98 E-value=7.5e-05 Score=65.95 Aligned_cols=146 Identities=15% Similarity=0.101 Sum_probs=92.5
Q ss_pred CCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCC
Q 024066 8 PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWEN 87 (273)
Q Consensus 8 ~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g 87 (273)
+.+++.. .+++||+||.|+|.+..++..++. .+.+.. +++ .+|.++|.+...+ ++++.+... ...-+
T Consensus 72 ~~~~~~~-~~~~aDlVi~av~e~~~~k~~~~~--~l~~~~--~~~-~il~s~ts~~~~~-~la~~~~~~------~r~ig 138 (282)
T PRK05808 72 TGTTDLD-DLKDADLVIEAATENMDLKKKIFA--QLDEIA--KPE-AILATNTSSLSIT-ELAAATKRP------DKVIG 138 (282)
T ss_pred EEeCCHH-HhccCCeeeecccccHHHHHHHHH--HHHhhC--CCC-cEEEECCCCCCHH-HHHHhhCCC------cceEE
Confidence 3455654 478999999999987777644432 244432 343 4556777776666 677766321 11113
Q ss_pred ceEEE-ecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024066 88 PVMLD-APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTL 165 (273)
Q Consensus 88 ~~~ld-apv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l 165 (273)
.+|.. +++..... ...| -+.+++.++.++++++.+|+.++++++ +| .+.|-+ ....++|++.+
T Consensus 139 ~h~~~P~~~~~~ve-v~~g-----~~t~~e~~~~~~~l~~~lGk~pv~~~d~~g------~i~~Ri---~~~~~~ea~~~ 203 (282)
T PRK05808 139 MHFFNPVPVMKLVE-IIRG-----LATSDATHEAVEALAKKIGKTPVEVKNAPG------FVVNRI---LIPMINEAIFV 203 (282)
T ss_pred eeccCCcccCccEE-EeCC-----CCCCHHHHHHHHHHHHHcCCeeEEecCccC------hHHHHH---HHHHHHHHHHH
Confidence 56666 45554432 1111 345789999999999999999999987 55 233433 34677899999
Q ss_pred HHHcCCCHHHHHHHHh
Q 024066 166 GQSLGISASTLTKILN 181 (273)
Q Consensus 166 a~~~Gl~~~~~~~~l~ 181 (273)
.++--.+++++=..+.
T Consensus 204 ~~~gv~~~~diD~~~~ 219 (282)
T PRK05808 204 LAEGVATAEDIDEGMK 219 (282)
T ss_pred HHhCCCCHHHHHHHHH
Confidence 8775567777544444
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0011 Score=59.59 Aligned_cols=150 Identities=14% Similarity=0.094 Sum_probs=102.7
Q ss_pred CCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCC
Q 024066 8 PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWEN 87 (273)
Q Consensus 8 ~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g 87 (273)
+.++++++++++||+||-|+|...+++..++. .+.+.. +++ .||.+||++. ...++++.+.. .
T Consensus 72 ~~~~~l~~av~~aDlViEavpE~l~vK~~lf~--~l~~~~--~~~-aIlaSnTS~l-~~s~la~~~~~------p----- 134 (321)
T PRK07066 72 RFVATIEACVADADFIQESAPEREALKLELHE--RISRAA--KPD-AIIASSTSGL-LPTDFYARATH------P----- 134 (321)
T ss_pred eecCCHHHHhcCCCEEEECCcCCHHHHHHHHH--HHHHhC--CCC-eEEEECCCcc-CHHHHHHhcCC------c-----
Confidence 56778999999999999999999999888763 355442 344 6888888843 45567766532 1
Q ss_pred ceEEEecCCCCHHHHhcCceEEEeec---CHHHHHHHHHHHHHhcCCeEEeC-C-cChHHHHHHHHHHHHHHHHHHHHHH
Q 024066 88 PVMLDAPVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCG-G-AGNGAAAKICNNLTMAVSMLGVSEA 162 (273)
Q Consensus 88 ~~~ldapv~G~~~~a~~g~l~~~vgG---~~~~~~~~~~~l~~~~~~i~~~G-~-~g~a~~~Kl~~n~~~~~~~~~~~Ea 162 (273)
-+++-.=-+-.|.-. .|.=++.| ++++++++..+++.+|+..+.+. + +| .+.|=+. .+.+.|+
T Consensus 135 ~R~~g~HffnP~~~~---pLVEVv~g~~T~~e~~~~~~~f~~~lGk~pV~v~kd~pG------Fi~NRl~---~a~~~EA 202 (321)
T PRK07066 135 ERCVVGHPFNPVYLL---PLVEVLGGERTAPEAVDAAMGIYRALGMRPLHVRKEVPG------FIADRLL---EALWREA 202 (321)
T ss_pred ccEEEEecCCccccC---ceEEEeCCCCCCHHHHHHHHHHHHHcCCEeEecCCCCcc------HHHHHHH---HHHHHHH
Confidence 123332222222211 34445554 46899999999999998888884 5 66 3445443 4678999
Q ss_pred HHHHHHcCCCHHHHHHHHhhcCCc
Q 024066 163 LTLGQSLGISASTLTKILNSSSAR 186 (273)
Q Consensus 163 ~~la~~~Gl~~~~~~~~l~~~~~~ 186 (273)
+.+.++-..+++++=.++..+.+-
T Consensus 203 ~~lv~eGvas~edID~a~~~g~g~ 226 (321)
T PRK07066 203 LHLVNEGVATTGEIDDAIRFGAGI 226 (321)
T ss_pred HHHHHhCCCCHHHHHHHHHhCCCC
Confidence 999999889999887777666553
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.8e-05 Score=64.47 Aligned_cols=107 Identities=16% Similarity=0.151 Sum_probs=60.5
Q ss_pred CCCCCHHHHHhcCCEEEEeCCChH---------HHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchh
Q 024066 8 PTKETPFEVAEASDVVITMLPSSS---------HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCIL 78 (273)
Q Consensus 8 ~~~~s~~e~~~~advvi~~v~~~~---------av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~ 78 (273)
++.++..+++.+||++|+|||+|. .+++++. .+.+.+ .++++||..||+.|.+++++.+.+-+..
T Consensus 65 ~~t~~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~---~i~~~l--~~~~lvV~~STvppGtt~~~~~~ile~~- 138 (185)
T PF03721_consen 65 RATTDIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIE---SIAPVL--RPGDLVVIESTVPPGTTEELLKPILEKR- 138 (185)
T ss_dssp EEESEHHHHHHH-SEEEE----EBETTTSBETHHHHHHHH---HHHHHH--CSCEEEEESSSSSTTHHHHHHHHHHHHH-
T ss_pred hhhhhhhhhhhccceEEEecCCCccccCCccHHHHHHHHH---HHHHHH--hhcceEEEccEEEEeeehHhhhhhhhhh-
Confidence 556788899999999999999874 3455553 244443 4578999999999999997776554321
Q ss_pred hhccCCCCCceEEEecCC---CCHHHHhcCceEEEeecCHHH-HHHHHH
Q 024066 79 KEKKDSWENPVMLDAPVS---GGVLAAEAGTLTFMVGGSEDA-YQAAKP 123 (273)
Q Consensus 79 ~~~~g~~~g~~~ldapv~---G~~~~a~~g~l~~~vgG~~~~-~~~~~~ 123 (273)
++...++.+.-+|-. |..-.--...-.++.|.+++. .+++++
T Consensus 139 ---~~~~~~f~la~~PErl~~G~a~~d~~~~~rvV~G~~~~~~~~~~~~ 184 (185)
T PF03721_consen 139 ---SGKKEDFHLAYSPERLREGRAIEDFRNPPRVVGGCDDESAEERLKE 184 (185)
T ss_dssp ---CCTTTCEEEEE------TTSHHHHHHSSSEEEEEESSHHHHHHHHH
T ss_pred ---cccccCCeEEECCCccCCCCcchhccCCCEEEEeCCcHHHHHHHhc
Confidence 111125788889954 443332222334555555543 335544
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00046 Score=61.38 Aligned_cols=215 Identities=11% Similarity=0.117 Sum_probs=116.8
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCce
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPV 89 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~ 89 (273)
.+++.++...+|+||+|++.+ ++++++.. +.+.. .++.+||.+... .+....+.+.+.+. + ...++.
T Consensus 59 ~~~~~~~~~~~d~vilavk~~-~~~~~~~~---l~~~~--~~~~~ii~~~nG-~~~~~~l~~~~~~~----~--v~~g~~ 125 (305)
T PRK12921 59 ITDPEELTGPFDLVILAVKAY-QLDAAIPD---LKPLV--GEDTVIIPLQNG-IGQLEQLEPYFGRE----R--VLGGVV 125 (305)
T ss_pred ecCHHHccCCCCEEEEEeccc-CHHHHHHH---HHhhc--CCCCEEEEeeCC-CChHHHHHHhCCcc----c--EEEEEE
Confidence 456677778999999999986 45666643 33321 234556554332 23333444444221 0 001245
Q ss_pred EEEecCCCCHHHHhcCceEEEeecC----HHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHH------------
Q 024066 90 MLDAPVSGGVLAAEAGTLTFMVGGS----EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA------------ 153 (273)
Q Consensus 90 ~ldapv~G~~~~a~~g~l~~~vgG~----~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~------------ 153 (273)
+..++..+.-.-...+.-.+.+|.. .+..+++..+|...+..+....++-...-.|++.|....
T Consensus 126 ~~~~~~~~~g~v~~~~~~~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~ 205 (305)
T PRK12921 126 FISAQLNGDGVVVQRADHRLTFGEIPGQRSERTRAVRDALAGARLEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGG 205 (305)
T ss_pred EEEEEECCCeEEEEcCCCcEEEcCCCCCcCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHH
Confidence 5556654421111112223556542 234556666777666555555557888999999886542
Q ss_pred ---------HHHHHHHHHHHHHHHcCCCH--HHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHH
Q 024066 154 ---------VSMLGVSEALTLGQSLGISA--STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDL 222 (273)
Q Consensus 154 ---------~~~~~~~Ea~~la~~~Gl~~--~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~ 222 (273)
.....+.|...++++.|++. +.+.+.+..-.... ... .+.|+.. +..+.. .-++.. .
T Consensus 206 ~~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~~~~~~~~~~~--~~~---~sSm~~D-~~~gr~---tEid~i---~ 273 (305)
T PRK12921 206 ILSRPGGRDLARALLRECLAVARAEGAPLRDDVVEEIVKIFAGAP--GDM---KTSMLRD-MEKGRP---LEIDHL---Q 273 (305)
T ss_pred HHhCccHHHHHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccC--CCC---CcHHHHH-HHcCCc---ccHHHH---H
Confidence 24467899999999999864 33333332210000 000 0111110 001110 012222 2
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHH
Q 024066 223 NLALASAKEVGVDCPLTSQAQDIYAKL 249 (273)
Q Consensus 223 ~~~~~~a~~~g~~~~~~~~~~~~~~~a 249 (273)
..++++++++|+++|..+...+++...
T Consensus 274 G~vv~~a~~~gv~~P~~~~l~~~~~~~ 300 (305)
T PRK12921 274 GVLLRRARAHGIPTPILDTVYALLKAY 300 (305)
T ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 358999999999999999999988654
|
|
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00046 Score=59.76 Aligned_cols=156 Identities=13% Similarity=0.151 Sum_probs=96.0
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCC
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 84 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~ 84 (273)
.|++.++++.+++++||+||+||+ |.++.+|+.. +-+.. .++++||.++..-+- .++.+.+..
T Consensus 29 ~g~~~~~~~~e~~~~aDiIiLaVk-P~~i~~vl~~---l~~~~--~~~~~ivS~~agi~~--~~l~~~~~~--------- 91 (245)
T TIGR00112 29 LGIVASSDAQEAVKEADVVFLAVK-PQDLEEVLSE---LKSEK--GKDKLLISIAAGVTL--EKLSQLLGG--------- 91 (245)
T ss_pred cCcEEeCChHHHHhhCCEEEEEeC-HHHHHHHHHH---Hhhhc--cCCCEEEEecCCCCH--HHHHHHcCC---------
Confidence 378888999999999999999999 7889998854 22211 234566655444433 234444421
Q ss_pred CCCceEEEecCCCCHHHHhcCceEEEeec--CHHHHHHHHHHHHHhcCCeEEeCC--cChHHHHHHHHHHHHHHHHHHHH
Q 024066 85 WENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKPLFLSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVS 160 (273)
Q Consensus 85 ~~g~~~ldapv~G~~~~a~~g~l~~~vgG--~~~~~~~~~~~l~~~~~~i~~~G~--~g~a~~~Kl~~n~~~~~~~~~~~ 160 (273)
+.. +---+--.+....+|...+..+. +++..+.++.+|+.+|. ++++.+ ......+--+...+++..+..+.
T Consensus 92 --~~~-ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~-~~~v~E~~~~~~talsgsgPA~~~~~~~al~ 167 (245)
T TIGR00112 92 --TRR-VVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGE-VVELPEALMDAVTALSGSGPAYVFLFIEALA 167 (245)
T ss_pred --CCe-EEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCC-EEEECHHHcchHHhhccCcHHHHHHHHHHHH
Confidence 011 21223334444555553444432 34556889999999998 556655 44455444445555555555555
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhcC
Q 024066 161 EALTLGQSLGISASTLTKILNSSS 184 (273)
Q Consensus 161 Ea~~la~~~Gl~~~~~~~~l~~~~ 184 (273)
+ .+.+.|+++++-.+++....
T Consensus 168 ~---~~v~~Gl~~~~A~~lv~~~~ 188 (245)
T TIGR00112 168 D---AGVKQGLPRELALELAAQTV 188 (245)
T ss_pred H---HHHHcCCCHHHHHHHHHHHH
Confidence 4 47778999999888776653
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00018 Score=63.67 Aligned_cols=149 Identities=15% Similarity=0.159 Sum_probs=93.5
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEE-EEcCCCCHHHHHHHHHHHhhchhhhccCC
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDS 84 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~ii-id~ST~~P~~~~~l~~~~~~~g~~~~~g~ 84 (273)
..+.+++.++++++||+||.|+|.+.+++..++. .+.+.. +++.++ .++||.++....+ .+.. .
T Consensus 71 ~i~~~~d~~~a~~~aDlVieavpe~~~~k~~~~~--~l~~~~--~~~~ii~sntSt~~~~~~~~---~~~~------~-- 135 (287)
T PRK08293 71 RITLTTDLAEAVKDADLVIEAVPEDPEIKGDFYE--ELAKVA--PEKTIFATNSSTLLPSQFAE---ATGR------P-- 135 (287)
T ss_pred CeEEeCCHHHHhcCCCEEEEeccCCHHHHHHHHH--HHHhhC--CCCCEEEECcccCCHHHHHh---hcCC------c--
Confidence 3456788999999999999999998766554432 233332 344555 5888887865443 2221 0
Q ss_pred CCCceEEEecCCCCHHHHhcCceEEEe---ecCHHHHHHHHHHHHHhcCCeEEeC-C-cChHHHHHHHHHHHHHHHHHHH
Q 024066 85 WENPVMLDAPVSGGVLAAEAGTLTFMV---GGSEDAYQAAKPLFLSMGKNTIYCG-G-AGNGAAAKICNNLTMAVSMLGV 159 (273)
Q Consensus 85 ~~g~~~ldapv~G~~~~a~~g~l~~~v---gG~~~~~~~~~~~l~~~~~~i~~~G-~-~g~a~~~Kl~~n~~~~~~~~~~ 159 (273)
.+|+-.=.+..+. ...+..++ ..++++++++..+++.+++..+++. + +|. +.|=+ ....+
T Consensus 136 ---~r~vg~Hf~~p~~---~~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgf------i~nRi---~~~~~ 200 (287)
T PRK08293 136 ---EKFLALHFANEIW---KNNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPGY------ILNSL---LVPFL 200 (287)
T ss_pred ---ccEEEEcCCCCCC---cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCCH------hHHHH---HHHHH
Confidence 1233211111111 22445555 3467899999999999999888886 4 552 22332 34577
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhcC
Q 024066 160 SEALTLGQSLGISASTLTKILNSSS 184 (273)
Q Consensus 160 ~Ea~~la~~~Gl~~~~~~~~l~~~~ 184 (273)
+|++.+.+..-.+++++=.++..+.
T Consensus 201 ~ea~~l~~~g~a~~~~iD~a~~~~~ 225 (287)
T PRK08293 201 SAALALWAKGVADPETIDKTWMIAT 225 (287)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHhcc
Confidence 9999999987678888755555543
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00024 Score=70.06 Aligned_cols=116 Identities=15% Similarity=0.186 Sum_probs=76.9
Q ss_pred cCCCCCCCCHHHHHh-cCCEEEEeCCChHHHHHHHcCCCCccc-CCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhc
Q 024066 4 DMGVPTKETPFEVAE-ASDVVITMLPSSSHVLDVYNGPNGLLQ-GGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEK 81 (273)
Q Consensus 4 ~~Ga~~~~s~~e~~~-~advvi~~v~~~~av~~v~~~~~g~l~-~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~ 81 (273)
+.|+....++.+++. .+|+||+|+|. ....+++.. +.. .+ +++.+|+|++++.-...+.+.+.+..
T Consensus 409 ~~Gv~~~~~~~el~~~~aDvVILavP~-~~~~~vi~~---l~~~~l--k~g~ivvDv~SvK~~~~~~~~~~l~~------ 476 (667)
T PLN02712 409 KLGVSYFSDADDLCEEHPEVILLCTSI-LSTEKVLKS---LPFQRL--KRSTLFVDVLSVKEFPRNLFLQHLPQ------ 476 (667)
T ss_pred HcCCeEeCCHHHHHhcCCCEEEECCCh-HHHHHHHHH---HHHhcC--CCCcEEEECCCccHHHHHHHHHhccC------
Confidence 357777778888776 59999999996 566777653 221 22 35689999999984444444433321
Q ss_pred cCCCCCceEE-EecCCCCHHHHhcC--ceE-----EEeecCHHHHHHH---HHHHHHhcCCeEEeCC
Q 024066 82 KDSWENPVML-DAPVSGGVLAAEAG--TLT-----FMVGGSEDAYQAA---KPLFLSMGKNTIYCGG 137 (273)
Q Consensus 82 ~g~~~g~~~l-dapv~G~~~~a~~g--~l~-----~~vgG~~~~~~~~---~~~l~~~~~~i~~~G~ 137 (273)
+..|+ ..|+.|.... ..| .+. .+++++.+.++++ ..+++.+|.+++.+.+
T Consensus 477 -----~~~~v~~HPm~G~e~~-~~G~~~~~~lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~ms~ 537 (667)
T PLN02712 477 -----DFDILCTHPMFGPESG-KNGWNNLAFVFDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEMSC 537 (667)
T ss_pred -----CCceEeeCCCCCcccc-ccchhhhhhhccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEeCH
Confidence 35688 8999998754 122 122 4566776665555 4788889998888865
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0019 Score=56.41 Aligned_cols=209 Identities=9% Similarity=0.015 Sum_probs=117.0
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCC
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 85 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~ 85 (273)
+...+.++.+++++||+||+|++ +.++++++.. +.+.. .++.+|-+++.+++++.+++.. ..
T Consensus 44 ~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl~~---i~~~l--~~~~iIS~~aGi~~~~l~~~~~---~~--------- 105 (260)
T PTZ00431 44 PFVYLQSNEELAKTCDIIVLAVK-PDLAGKVLLE---IKPYL--GSKLLISICGGLNLKTLEEMVG---VE--------- 105 (260)
T ss_pred CeEEeCChHHHHHhCCEEEEEeC-HHHHHHHHHH---HHhhc--cCCEEEEEeCCccHHHHHHHcC---CC---------
Confidence 33456788899999999999988 4678888864 43332 2346888999999887775431 10
Q ss_pred CCceEEEecCCCCHHHHhcCceEEEeec---CHHHHHHHHHHHHHhcCCeEEeCC--cChHHHHHHHHHHHHHHHHHHHH
Q 024066 86 ENPVMLDAPVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVS 160 (273)
Q Consensus 86 ~g~~~ldapv~G~~~~a~~g~l~~~vgG---~~~~~~~~~~~l~~~~~~i~~~G~--~g~a~~~Kl~~n~~~~~~~~~~~ 160 (273)
...+ --+.+.|.....|. ++++.+ +++..+.++.+|+.+|. ++.+.+ .-....+==+.-.+. ..+.
T Consensus 106 --~~vv-r~mPn~p~~~g~g~-t~i~~~~~~~~~~~~~v~~l~~~~G~-~~~v~E~~~d~~ta~~gsgPA~~----~~~~ 176 (260)
T PTZ00431 106 --AKIV-RVMPNTPSLVGQGS-LVFCANNNVDSTDKKKVIDIFSACGI-IQEIKEKDMDIATAISGCGPAYV----FLFI 176 (260)
T ss_pred --CeEE-EECCCchhHhccee-EEEEeCCCCCHHHHHHHHHHHHhCCc-EEEEChHHcchhhhhcCCHHHHH----HHHH
Confidence 1111 22334444444444 444444 34568899999999998 556644 233332222222223 3333
Q ss_pred HHH-HHHHHcCCCHHHHHHHHhhcCCccc-ccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChH
Q 024066 161 EAL-TLGQSLGISASTLTKILNSSSARCW-SSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPL 238 (273)
Q Consensus 161 Ea~-~la~~~Gl~~~~~~~~l~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~ 238 (273)
|++ ..+.+.|++.++-.+++.....++- +......-|.. +.+.--+|+-+ -...++..++.|+.--+
T Consensus 177 ~al~~~~v~~Gl~~~~a~~l~~~~~~G~a~ll~~~~~~~~~----l~~~v~spgG~-------T~~gl~~le~~g~~~~~ 245 (260)
T PTZ00431 177 ESLIDAGVKNGLNRDVSKNLVLQTILGSVHMVKASDQPVQQ----LKDDVCSPGGI-------TIVGLYTLEKHAFKYTV 245 (260)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHH----HHHhCCCCChH-------HHHHHHHHHHCChHHHH
Confidence 333 4577889999998887766532111 10000000000 00111122211 12344566777888778
Q ss_pred HHHHHHHHHHHHHC
Q 024066 239 TSQAQDIYAKLCEN 252 (273)
Q Consensus 239 ~~~~~~~~~~a~~~ 252 (273)
.+++..-++++.+-
T Consensus 246 ~~a~~aa~~r~~~l 259 (260)
T PTZ00431 246 MDAVESACQKSKSM 259 (260)
T ss_pred HHHHHHHHHHHHhc
Confidence 88877777776653
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0014 Score=57.75 Aligned_cols=210 Identities=13% Similarity=0.080 Sum_probs=116.8
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhchhhhccC
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNCILKEKKD 83 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~S-T~~P~~~~~l~~~~~~~g~~~~~g 83 (273)
.|++.+++..|++++||+||+||++ .++++|+.+ +.+.. .++++||+.- .++.++.+ +.+...
T Consensus 49 ~g~~~~~~~~e~~~~aDiIiLavkP-~~~~~vl~~---l~~~~--~~~~lvISi~AGi~i~~l~---~~l~~~------- 112 (272)
T PRK12491 49 YGITITTNNNEVANSADILILSIKP-DLYSSVINQ---IKDQI--KNDVIVVTIAAGKSIKSTE---NEFDRK------- 112 (272)
T ss_pred cCcEEeCCcHHHHhhCCEEEEEeCh-HHHHHHHHH---HHHhh--cCCcEEEEeCCCCcHHHHH---HhcCCC-------
Confidence 5777888999999999999999995 788999853 44332 3446888654 44444433 333210
Q ss_pred CCCCceEEEecCCCCHHHHhcCceEEEeec--CHHHHHHHHHHHHHhcCCeEEeCC--cChHHHHHHHHHHHHHHHHHHH
Q 024066 84 SWENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKPLFLSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGV 159 (273)
Q Consensus 84 ~~~g~~~ldapv~G~~~~a~~g~l~~~vgG--~~~~~~~~~~~l~~~~~~i~~~G~--~g~a~~~Kl~~n~~~~~~~~~~ 159 (273)
.. +---+--.|.....|...+..+. +++..+.++.+|+.+|. ++.+.+ .....++==+.-.+ +..+
T Consensus 113 ----~~-vvR~MPN~~~~vg~g~t~~~~~~~~~~~~~~~v~~lf~~~G~-~~~~~E~~~d~~talsgsgPAf----~~~~ 182 (272)
T PRK12491 113 ----LK-VIRVMPNTPVLVGEGMSALCFNEMVTEKDIKEVLNIFNIFGQ-TEVVNEKLMDVVTSISGSSPAY----VYMF 182 (272)
T ss_pred ----Cc-EEEECCChHHHHcCceEEEEeCCCCCHHHHHHHHHHHHcCCC-EEEEcHHHhhhHHHhccCcHHH----HHHH
Confidence 11 11223344555555654444332 24466789999999999 466654 33333321122222 3344
Q ss_pred HHHH-HHHHHcCCCHHHHHHHHhhcCCccc-cc-ccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCC
Q 024066 160 SEAL-TLGQSLGISASTLTKILNSSSARCW-SS-DSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDC 236 (273)
Q Consensus 160 ~Ea~-~la~~~Gl~~~~~~~~l~~~~~~s~-~~-~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~ 236 (273)
.|++ ..+.+.|++.++-.+++.+...++- +. +.-.+ |..+ .+.=-+|+-+ -...++..++.|+.-
T Consensus 183 ~eal~~a~v~~Gl~~~~A~~l~~~t~~G~a~ll~~~~~~-p~~l----~~~V~sPGGt-------T~~gl~~le~~~~~~ 250 (272)
T PRK12491 183 IEAMADAAVLGGMPRKQAYKFAAQAVLGSAKMVLETGIH-PGEL----KDMVCSPGGT-------TIEAVATLEEKGLRT 250 (272)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCC-HHHH----HHhCCCCchH-------HHHHHHHHHHCChHH
Confidence 4444 4567789999988887766532211 10 00000 0000 0000122211 223456667788888
Q ss_pred hHHHHHHHHHHHHHHC
Q 024066 237 PLTSQAQDIYAKLCEN 252 (273)
Q Consensus 237 ~~~~~~~~~~~~a~~~ 252 (273)
-+.+++..-++++.+-
T Consensus 251 ~~~~av~aa~~r~~el 266 (272)
T PRK12491 251 AIISAMKRCTQKSMEM 266 (272)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888777653
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0017 Score=58.59 Aligned_cols=228 Identities=14% Similarity=0.133 Sum_probs=111.3
Q ss_pred CCCCHHHHH-hcCCEEEEeCCChHHHHHHHcCCCCccc-CCCCCCCeEEEEcCCCCHHH----HHHHHHHHhhchhhhcc
Q 024066 9 TKETPFEVA-EASDVVITMLPSSSHVLDVYNGPNGLLQ-GGNSVRPQLLIDSSTIDPQT----SRNISAAVSNCILKEKK 82 (273)
Q Consensus 9 ~~~s~~e~~-~~advvi~~v~~~~av~~v~~~~~g~l~-~~~~~~g~iiid~ST~~P~~----~~~l~~~~~~~g~~~~~ 82 (273)
...++.+++ ..+|+||+++|+. ++++++.. +.+ .. .+...+++-++-....+ .+.+.+.+..+
T Consensus 60 ~~~~~~~~~~~~~Dliiiavks~-~~~~~l~~---l~~~~l-~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~------ 128 (326)
T PRK14620 60 VKSAIDEVLSDNATCIILAVPTQ-QLRTICQQ---LQDCHL-KKNTPILICSKGIEKSSLKFPSEIVNEILPNN------ 128 (326)
T ss_pred EeCCHHHHHhCCCCEEEEEeCHH-HHHHHHHH---HHHhcC-CCCCEEEEEEcCeeCCCCccHHHHHHHHcCCC------
Confidence 445667776 5899999999985 66777754 332 22 12222443333332211 12222222110
Q ss_pred CCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCC---eEEeCCcChHHHHHHHHHHHHHH-----
Q 024066 83 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKN---TIYCGGAGNGAAAKICNNLTMAV----- 154 (273)
Q Consensus 83 g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~---i~~~G~~g~a~~~Kl~~n~~~~~----- 154 (273)
.+..+..|-... ..+......+.++|... +..+.+.+.|... ++.--++-.....|++-|.+...
T Consensus 129 ----~~~~~~Gp~~a~-~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~ 201 (326)
T PRK14620 129 ----PIAILSGPSFAK-EIAEKLPCSIVLAGQNE--TLGSSLISKLSNENLKIIYSQDIIGVQIGAALKNIIAIACGIVL 201 (326)
T ss_pred ----ceEeecCCcHHH-HHHcCCCcEEEEecCCH--HHHHHHHHHHCCCCeEEEecCcchhhhhHHHHHHHHHHHHHHHh
Confidence 022222221100 11222222344455433 2334444555443 33333466677778877764322
Q ss_pred ------------HHHHHHHHHHHHHHcCC--CHHHHH------HHHhhcC---CcccccccCCCCCCcccCCCCCCCCCC
Q 024066 155 ------------SMLGVSEALTLGQSLGI--SASTLT------KILNSSS---ARCWSSDSYNPVPGVMEGVPASRNYGG 211 (273)
Q Consensus 155 ------------~~~~~~Ea~~la~~~Gl--~~~~~~------~~l~~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~~ 211 (273)
...++.|+..++++.|. ++++++ |.+.... .+++.+........++.+ +..+.
T Consensus 202 g~~~~~n~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~gl~g~gdl~~t~~~~~~rN~~~G~~l~~g~~~~d-~~~~~--- 277 (326)
T PRK14620 202 GKNLGNNAHAAVITKGMNEIKTLYSAKNGSIDLNTLIGPSCLGDLILTCTTLHSRNMSFGFKIGNGFNINQ-ILSEG--- 277 (326)
T ss_pred hcCCCchHHHHHHHHHHHHHHHHHHHhCCCCCcchhhccchhhhhhheecCCCCCcHHHHHHHHCCCCHHH-HHHhC---
Confidence 35678899999999987 777774 5553321 000000000000000000 00000
Q ss_pred CcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHH
Q 024066 212 GFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 266 (273)
Q Consensus 212 ~f~~~~~~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~G~g~~d~sai~~~~ 266 (273)
. +.-....-+..+.+++++.|+++|+.+.+.+++ +++.+...+++.+
T Consensus 278 ~-~~vegi~~~~~v~~~a~~~~i~~P~~~~l~~~~-------~~~~~~~~~~~~~ 324 (326)
T PRK14620 278 K-SVIEGFSTVKPLISLAKKLNIELPICESIYNLL-------YENISLEKTISVI 324 (326)
T ss_pred C-CEeecHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------hCCCCHHHHHHHH
Confidence 0 000123334678899999999999999998876 5566666666554
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00053 Score=68.56 Aligned_cols=142 Identities=13% Similarity=0.152 Sum_probs=91.0
Q ss_pred CCCC--CCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhcc
Q 024066 5 MGVP--TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 82 (273)
Q Consensus 5 ~Ga~--~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~ 82 (273)
.|+. ...+..++++++|+||+|+|.. .+.+++.. +.+.+ .++.+|+|++++.+...+++.+.+...
T Consensus 47 ~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl~~---l~~~~--~~~~ii~d~~svk~~~~~~l~~~~~~~------ 114 (735)
T PRK14806 47 LGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVLAD---LKPLL--SEHAIVTDVGSTKGNVVDAARAVFGEL------ 114 (735)
T ss_pred CCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHHHH---HHHhc--CCCcEEEEcCCCchHHHHHHHHhcccc------
Confidence 4553 3556788899999999999975 67777753 43332 345799999999998888887776421
Q ss_pred CCCCCce-EEEecCCCCHHH---Hh-----cCceEEEee---cCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHH
Q 024066 83 DSWENPV-MLDAPVSGGVLA---AE-----AGTLTFMVG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNL 150 (273)
Q Consensus 83 g~~~g~~-~ldapv~G~~~~---a~-----~g~l~~~vg---G~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~ 150 (273)
.++ +-..|+.|+... +. .+...+++- ++++.++.++++++.+|.+++++.+--.-..+=+ .+.
T Consensus 115 ----~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~~~~~hD~~~a~-~~~ 189 (735)
T PRK14806 115 ----PAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAALARVDRLWRAVGADVLHMDVAHHDEVLAA-TSH 189 (735)
T ss_pred ----CCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHhHHHHH-hcc
Confidence 144 457898876531 12 223334443 4667889999999999998888866322222222 233
Q ss_pred HHHHHHHHHHHHH
Q 024066 151 TMAVSMLGVSEAL 163 (273)
Q Consensus 151 ~~~~~~~~~~Ea~ 163 (273)
+-+.....+.|++
T Consensus 190 ~ph~~~~~l~~~l 202 (735)
T PRK14806 190 LPHLLAFSLVDQL 202 (735)
T ss_pred hHHHHHHHHHHHH
Confidence 3333344455553
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0052 Score=52.85 Aligned_cols=151 Identities=13% Similarity=0.143 Sum_probs=87.0
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhchhhhccCC
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDS 84 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~-ST~~P~~~~~l~~~~~~~g~~~~~g~ 84 (273)
|++...+..++++++|+||+|+|+. ..++++.. +.+.. ++++||.+ ..++.++ +.+.+..
T Consensus 53 ~~~~~~~~~~~~~~~DiViiavp~~-~~~~v~~~---l~~~~---~~~~vis~~~gi~~~~---l~~~~~~--------- 113 (245)
T PRK07634 53 NVSTTTDWKQHVTSVDTIVLAMPPS-AHEELLAE---LSPLL---SNQLVVTVAAGIGPSY---LEERLPK--------- 113 (245)
T ss_pred CcEEeCChHHHHhcCCEEEEecCHH-HHHHHHHH---HHhhc---cCCEEEEECCCCCHHH---HHHHcCC---------
Confidence 6666788999999999999999976 56778753 33321 23566654 4555553 4443321
Q ss_pred CCCceE-EEecCCCCHHHHhcCceEEEee--cCHHHHHHHHHHHHHhcCCeEEeCC--cChHHHHHHHHHHHHHHHHHHH
Q 024066 85 WENPVM-LDAPVSGGVLAAEAGTLTFMVG--GSEDAYQAAKPLFLSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGV 159 (273)
Q Consensus 85 ~~g~~~-ldapv~G~~~~a~~g~l~~~vg--G~~~~~~~~~~~l~~~~~~i~~~G~--~g~a~~~Kl~~n~~~~~~~~~~ 159 (273)
+..+ .-.| -.+.....|...+..+ ++++..+.++.+|+.+|..+ ++.+ .-..+++=-+.-.+....+..
T Consensus 114 --~~~v~r~~P--n~a~~v~~g~~~~~~~~~~~~~~~~~v~~lf~~~G~~~-~~~e~~~~~~~a~~gs~pa~~~~~~~a- 187 (245)
T PRK07634 114 --GTPVAWIMP--NTAAEIGKSISLYTMGQSVNETHKETLQLILKGIGTSQ-LCTEEEVHQLTAVTGSAPAFLYYFAES- 187 (245)
T ss_pred --CCeEEEECC--cHHHHHhcCCeEEeeCCCCCHHHHHHHHHHHHhCCCEE-EECHHHcchHHhhhcchHHHHHHHHHH-
Confidence 1112 2233 2233444453233333 46678899999999999965 4643 222222222222223233333
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhc
Q 024066 160 SEALTLGQSLGISASTLTKILNSS 183 (273)
Q Consensus 160 ~Ea~~la~~~Gl~~~~~~~~l~~~ 183 (273)
....+.+.|++.++-.+++...
T Consensus 188 --~~~~~~~~Gl~~~~a~~~~~~~ 209 (245)
T PRK07634 188 --LIEATKSYGVDEETAKHLVIQM 209 (245)
T ss_pred --HHHHHHHcCCCHHHHHHHHHHH
Confidence 3345788999999877777653
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0055 Score=56.13 Aligned_cols=238 Identities=14% Similarity=0.055 Sum_probs=122.9
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCC-CHHHH--HHHHHHHhhchhhhccC
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI-DPQTS--RNISAAVSNCILKEKKD 83 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~-~P~~~--~~l~~~~~~~g~~~~~g 83 (273)
.+..++..++++++|+||+++|. ..+++++..-...- .. .++.++|.++-. .+++- ..+.+.+.+. - +
T Consensus 81 i~~tsdl~eav~~aDiIvlAVPs-q~l~~vl~~l~~~~-~l--~~~~~iIS~aKGIe~~t~~~~~~sevi~e~----l-~ 151 (365)
T PTZ00345 81 IVAVSDLKEAVEDADLLIFVIPH-QFLESVLSQIKENN-NL--KKHARAISLTKGIIVENGKPVLCSDVIEEE----L-G 151 (365)
T ss_pred eEEecCHHHHHhcCCEEEEEcCh-HHHHHHHHHhcccc-cc--CCCCEEEEEeCCcccCCCCcccHHHHHHHH----h-C
Confidence 44567888999999999999996 57888886533200 21 233456644332 22221 2334444331 0 0
Q ss_pred CCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCC-cCh--HHHHH--------------H
Q 024066 84 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG-AGN--GAAAK--------------I 146 (273)
Q Consensus 84 ~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~-~g~--a~~~K--------------l 146 (273)
..+.++-.|-+-..-....-+..++.+-+.+..+.++.+|..=--+++.--+ .|. +.++| +
T Consensus 152 --~~~~~LsGPs~A~Eva~~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~ 229 (365)
T PTZ00345 152 --IPCCALSGANVANDVAREEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGL 229 (365)
T ss_pred --CCeEEEECCCHHHHHHcCCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 0122333332211111111233344444666666667666531112222122 232 33333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHhhcC--CcccccccCCCCCCcccCCCCCCCCCCCcchhh-----
Q 024066 147 CNNLTMAVSMLGVSEALTLGQSLG--ISASTLTKILNSSS--ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKL----- 217 (273)
Q Consensus 147 ~~n~~~~~~~~~~~Ea~~la~~~G--l~~~~~~~~l~~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~----- 217 (273)
=.|.-.+....++.|+..+++++| -++++++....-+- ..+..++++ .+...+..+. .+.+++-
T Consensus 230 G~N~kaalitrgl~Em~~l~~a~g~~~~~~T~~glaG~GDLi~Tc~sSRN~-----~~G~~l~~g~--~~~~~~~~~~~~ 302 (365)
T PTZ00345 230 GTNTKSAIIRIGLEEMKLFGKIFFPNVMDETFFESCGLADLITTCLGGRNV-----RCAAEFAKRN--GKKSWEEIEAEL 302 (365)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHhCCCCCccchhccchHhHhhhcccCCCcH-----HHHHHHhccC--CCCCHHHHHHHh
Confidence 467777777888999999999996 47777765322110 000000110 0000011110 0011222
Q ss_pred -------HHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhcC
Q 024066 218 -------MAKDLNLALASAKEVGV--DCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGG 269 (273)
Q Consensus 218 -------~~KD~~~~~~~a~~~g~--~~~~~~~~~~~~~~a~~~G~g~~d~sai~~~~~~~ 269 (273)
-..-...+.+++++.++ ++|+++++.+++ |++.+...+++.+..+
T Consensus 303 ~~~~~vEG~~t~~~v~~l~~~~~i~~~~Pi~~~vy~il-------~~~~~~~~~~~~l~~r 356 (365)
T PTZ00345 303 LNGQKLQGTVTLKEVYEVLESHDLKKEFPLFTVTYKIA-------FEGADPSSLIDVLSTN 356 (365)
T ss_pred hCCcEechHHHHHHHHHHHHHcCCCCCCCHHHHHHHHH-------hCCCCHHHHHHHHHcC
Confidence 23335667789999999 899999998887 5666777777766544
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0023 Score=55.82 Aligned_cols=107 Identities=15% Similarity=0.245 Sum_probs=71.2
Q ss_pred HHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEE-
Q 024066 14 FEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD- 92 (273)
Q Consensus 14 ~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~~ld- 92 (273)
.+++.++|+||+|+|-. .+.+++.. +.+.+ ..+.+|+|.+++--.-.+.+.+.+.. +..|+-
T Consensus 40 ~~~~~~~DlvvlavP~~-~~~~~l~~---~~~~~--~~~~iv~Dv~SvK~~~~~~~~~~~~~-----------~~~~v~~ 102 (258)
T PF02153_consen 40 IEAVEDADLVVLAVPVS-AIEDVLEE---IAPYL--KPGAIVTDVGSVKAPIVEAMERLLPE-----------GVRFVGG 102 (258)
T ss_dssp HHHGGCCSEEEE-S-HH-HHHHHHHH---HHCGS---TTSEEEE--S-CHHHHHHHHHHHTS-----------SGEEEEE
T ss_pred HhHhcCCCEEEEcCCHH-HHHHHHHH---hhhhc--CCCcEEEEeCCCCHHHHHHHHHhcCc-----------ccceeec
Confidence 67899999999999975 55667653 44432 45689999999998888877776542 256776
Q ss_pred ecCCCC--------HHHHhcCceEEEeecC---HHHHHHHHHHHHHhcCCeEEeCC
Q 024066 93 APVSGG--------VLAAEAGTLTFMVGGS---EDAYQAAKPLFLSMGKNTIYCGG 137 (273)
Q Consensus 93 apv~G~--------~~~a~~g~l~~~vgG~---~~~~~~~~~~l~~~~~~i~~~G~ 137 (273)
=|+.|. ...--.|...+++-++ ++.++.++.+++.+|.+++++..
T Consensus 103 HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~ 158 (258)
T PF02153_consen 103 HPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGARVVEMDA 158 (258)
T ss_dssp EESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE--H
T ss_pred CCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEEcCH
Confidence 588887 2333356667777443 46889999999999999888743
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00046 Score=60.72 Aligned_cols=102 Identities=18% Similarity=0.237 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh---hcCCcccccccCCCCCCcccCCCCCCCCCCCcchh
Q 024066 141 GAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKILN---SSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASK 216 (273)
Q Consensus 141 a~~~Kl~~n~~~~~~~~~~~Ea~~la~~-~Gl~~~~~~~~l~---~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 216 (273)
|+.+||++|-+.++.|++++|++.+.++ .|++.+++.++++ .+..+||+.+....+ +. ..|.++..-++
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~~ei~~vf~~Wn~g~l~S~Lieit~~i---l~----~~d~~g~~lld 73 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSNEEIADVFEEWNKGELRSYLIEITADI---LR----KKDETGGPLLD 73 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHTTTT-BHHHHHHHHH---HT-----B-TTSSBGGG
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHCcCchhhHHHHHHHHH---Hh----hccCccCcchh
Confidence 6889999999999999999999999995 7898887766665 566677766543221 11 11111111112
Q ss_pred hH------HHHHHHHHHHHHHhCCCChHHHHHH-HHHHHH
Q 024066 217 LM------AKDLNLALASAKEVGVDCPLTSQAQ-DIYAKL 249 (273)
Q Consensus 217 ~~------~KD~~~~~~~a~~~g~~~~~~~~~~-~~~~~a 249 (273)
.. ...-+.....|-+.|+|.|.+..+. .++.+.
T Consensus 74 ~I~d~a~~kGtG~Wt~~~a~~~gvp~p~I~~a~~aR~~S~ 113 (291)
T PF00393_consen 74 KILDKAGQKGTGKWTVQEALELGVPAPTIAAAVFARFLSA 113 (291)
T ss_dssp GB-S----BSHHHHHHHHHHHHT---HHHHHHHHHHHHHH
T ss_pred hhCCccCCCCccchHHHHHHHhCCCccHHHHHHHHHHHhc
Confidence 11 1224667788999999999998876 555444
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A .... |
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.013 Score=52.54 Aligned_cols=233 Identities=19% Similarity=0.275 Sum_probs=133.6
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCC-CCHHHHHHHHHHHhhchhhhccCC
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST-IDPQTSRNISAAVSNCILKEKKDS 84 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST-~~P~~~~~l~~~~~~~g~~~~~g~ 84 (273)
+.++.++..+++++||+|++.+|. ..+++++..-.+.+ +++.++|.+|= ..|++.+.+.+.+++. -++.
T Consensus 58 ~l~at~Dl~~a~~~ad~iv~avPs-~~~r~v~~~l~~~l-----~~~~~iv~~sKGie~~t~~l~seii~e~----l~~~ 127 (329)
T COG0240 58 NLKATTDLAEALDGADIIVIAVPS-QALREVLRQLKPLL-----LKDAIIVSATKGLEPETGRLLSEIIEEE----LPDN 127 (329)
T ss_pred ccccccCHHHHHhcCCEEEEECCh-HHHHHHHHHHhhhc-----cCCCeEEEEeccccCCCcchHHHHHHHH----cCCC
Confidence 456778999999999999999997 57888886532232 24456665553 5566777777776652 1110
Q ss_pred CCCceEEEecCCCCHHHHhcCceEEEeec-CHHHHHHHHHHHHHhcCCeEEeCC-cC--hH--------------HHHHH
Q 024066 85 WENPVMLDAPVSGGVLAAEAGTLTFMVGG-SEDAYQAAKPLFLSMGKNTIYCGG-AG--NG--------------AAAKI 146 (273)
Q Consensus 85 ~~g~~~ldapv~G~~~~a~~g~l~~~vgG-~~~~~~~~~~~l~~~~~~i~~~G~-~g--~a--------------~~~Kl 146 (273)
.+.++..|=+-..-....-+ .+.+++ |++..++++..|..=.-+++.--+ .| -| .-+.+
T Consensus 128 --~~~vLSGPs~A~EVa~g~pt-a~~vas~d~~~a~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~ 204 (329)
T COG0240 128 --PIAVLSGPSFAKEVAQGLPT-AVVVASNDQEAAEKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGL 204 (329)
T ss_pred --eEEEEECccHHHHHhcCCCc-EEEEecCCHHHHHHHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 03333333222211111223 455555 566666677766652112221111 12 22 23445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCC------Ccc------
Q 024066 147 CNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG------GFA------ 214 (273)
Q Consensus 147 ~~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~------~f~------ 214 (273)
-+|.-.+...-+++|...++..+|=.+++++-.-. .|+ .+..-.. ..+|+|.- +.+
T Consensus 205 G~NakaalitrGL~Em~rlg~~lG~~~~T~~gLsG--lGD-LilTCts---------~~SRN~r~G~~lg~g~~~~e~l~ 272 (329)
T COG0240 205 GDNAKAALITRGLAEMTRLGVALGAKPETFMGLSG--LGD-LILTCTS---------PLSRNRRFGLLLGQGLSLDEALE 272 (329)
T ss_pred ChhHHHHHHHhHHHHHHHHHHHhCCCcchhccccc--ccc-eeEecCC---------CccccHHHHHHHhCCCCHHHHHH
Confidence 56777777788999999999999999886643321 111 1100000 01222211 111
Q ss_pred ----hhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhcCC
Q 024066 215 ----SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGK 270 (273)
Q Consensus 215 ----~~~~~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~G~g~~d~sai~~~~~~~~ 270 (273)
+---.+-.+.+.+.+++.|+++|+++++.+++ |++.+....++.+..++
T Consensus 273 ~~g~vvEGv~t~k~v~~la~~~~i~mPI~~~Vy~vl-------~~~~~~~~~~~~L~~r~ 325 (329)
T COG0240 273 EIGQVVEGVRTAKAVYELAKKLGIEMPITEAVYRVL-------YEGLDPKEAIEELMGRD 325 (329)
T ss_pred hcCCeeecHHHHHHHHHHHHHcCCCCCHHHHHHHHH-------hCCCCHHHHHHHHhccc
Confidence 11224556778899999999999999998887 45667777776664443
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.011 Score=53.74 Aligned_cols=155 Identities=15% Similarity=0.094 Sum_probs=84.8
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCC-CCHH--HHHHHHHHHhhchhhhccC
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST-IDPQ--TSRNISAAVSNCILKEKKD 83 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST-~~P~--~~~~l~~~~~~~g~~~~~g 83 (273)
.+..+++.+++++||+||+++|+. .+++++.. +.+.+ ..++++|.++= +.++ +.+.+.+.+.+. + +
T Consensus 70 i~at~dl~eal~~ADiIIlAVPs~-~i~~vl~~---l~~~l--~~~~~iVs~tKGie~~~~~~~~~se~i~e~-l----~ 138 (342)
T TIGR03376 70 LVAVPDLVEAAKGADILVFVIPHQ-FLEGICKQ---LKGHV--KPNARAISCIKGLEVSKDGVKLLSDIIEEE-L----G 138 (342)
T ss_pred eEEECCHHHHHhcCCEEEEECChH-HHHHHHHH---HHhhc--CCCCEEEEEeCCcccCCCcCccHHHHHHHH-h----C
Confidence 345678999999999999999975 77777754 32222 23345555442 2333 444555555442 0 0
Q ss_pred CCCCceEEEecCCCCHHHHhcCceEEEeecC----HHHHHHHHHHHHHhcCCeEE--eC-C-cCh--HHHHH--------
Q 024066 84 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGS----EDAYQAAKPLFLSMGKNTIY--CG-G-AGN--GAAAK-------- 145 (273)
Q Consensus 84 ~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~----~~~~~~~~~~l~~~~~~i~~--~G-~-~g~--a~~~K-------- 145 (273)
..+.++-.|-+-..-....-+...+.+-+ .+..+.++.+|. .+.++ .. + +|. +.++|
T Consensus 139 --~~~~~lsGP~~A~Eva~~~pt~~~ia~~~~~~~~~~a~~~~~lf~---~~~frv~~s~Dv~GvEl~galKNv~AIa~G 213 (342)
T TIGR03376 139 --IPCGVLSGANLANEVAKEKFSETTVGYRDPADFDVDARVLKALFH---RPYFRVNVVDDVAGVEIAGALKNVVAIAAG 213 (342)
T ss_pred --CCeEEeeCcchHHHHHcCCCceEEEEeCCCcchHHHHHHHHHHhC---CCCEEEEEcCCcccchhhHHHHHHHHHHHH
Confidence 01223333322221111112234444445 455556666654 33222 22 2 332 44444
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHH
Q 024066 146 ------ICNNLTMAVSMLGVSEALTLGQSLGISAS--TLT 177 (273)
Q Consensus 146 ------l~~n~~~~~~~~~~~Ea~~la~~~Gl~~~--~~~ 177 (273)
+=.|.-.+....++.|+..+++.+|-+++ +++
T Consensus 214 i~~Gl~~g~N~~aalitrgl~Em~~l~~~~g~~~~~~T~~ 253 (342)
T TIGR03376 214 FVDGLGWGDNAKAAVMRRGLLEMIKFARMFFPTGEVTFTF 253 (342)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccc
Confidence 23477667777888999999999998766 554
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0079 Score=53.79 Aligned_cols=115 Identities=20% Similarity=0.199 Sum_probs=76.8
Q ss_pred CCCCCCCCHHHHH-hcCCEEEEeCCChHHHHHHHcCCCCc-ccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhcc
Q 024066 5 MGVPTKETPFEVA-EASDVVITMLPSSSHVLDVYNGPNGL-LQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 82 (273)
Q Consensus 5 ~Ga~~~~s~~e~~-~~advvi~~v~~~~av~~v~~~~~g~-l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~ 82 (273)
.|+....+..+++ .++|+||+|+|.. ++.+++.. + ...+ .++.+|+|.+++--...+.+.+.+..
T Consensus 77 ~gv~~~~~~~e~~~~~aDvVilavp~~-~~~~vl~~---l~~~~l--~~~~iviDv~SvK~~~~~~~~~~l~~------- 143 (304)
T PLN02256 77 LGVSFFRDPDDFCEEHPDVVLLCTSIL-STEAVLRS---LPLQRL--KRSTLFVDVLSVKEFPKNLLLQVLPE------- 143 (304)
T ss_pred cCCeeeCCHHHHhhCCCCEEEEecCHH-HHHHHHHh---hhhhcc--CCCCEEEecCCchHHHHHHHHHhCCC-------
Confidence 4666677888876 4799999999975 66777753 3 2222 34579999999766556666555421
Q ss_pred CCCCCceEEE-ecCCCCHHH--HhcCceEEEeec--------CHHHHHHHHHHHHHhcCCeEEeCC
Q 024066 83 DSWENPVMLD-APVSGGVLA--AEAGTLTFMVGG--------SEDAYQAAKPLFLSMGKNTIYCGG 137 (273)
Q Consensus 83 g~~~g~~~ld-apv~G~~~~--a~~g~l~~~vgG--------~~~~~~~~~~~l~~~~~~i~~~G~ 137 (273)
+..|+- -|+.|.... ...+. .++... +++.++.++.+++.+|.+++.+.+
T Consensus 144 ----~~~~V~~HPmaG~e~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~~ 204 (304)
T PLN02256 144 ----EFDILCTHPMFGPESGKGGWAGL-PFVYDKVRIGDEGEREARCERFLDIFEEEGCRMVEMSC 204 (304)
T ss_pred ----CCeEEecCCCCCCCCCccccCCC-eEEEecceecCCCCCHHHHHHHHHHHHHCCCEEEEeCH
Confidence 234444 677776532 22233 344432 567889999999999999888865
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0025 Score=60.18 Aligned_cols=135 Identities=14% Similarity=0.156 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHhcC--CeEEeCCcCh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHh
Q 024066 115 EDAYQAAKPLFLSMGK--NTIYCGGAGN-----GAAAKICNNLTMAVSMLGVSEALTLGQS------LGISASTLTKILN 181 (273)
Q Consensus 115 ~~~~~~~~~~l~~~~~--~i~~~G~~g~-----a~~~Kl~~n~~~~~~~~~~~Ea~~la~~------~Gl~~~~~~~~l~ 181 (273)
+++|.|+.+.++.... ...|.|+.+. ++.+|.+.|.+..+.+.+++|.+.+.++ .++|..++..+.+
T Consensus 271 ~AvfaR~~S~~k~~r~~~~~~~~g~~~~~~~~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr 350 (459)
T PRK09287 271 EAVFARYLSSLKDQRVAASKVLSGPAAKFEGDKAEFIEDVRQALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWR 350 (459)
T ss_pred HHHHHHhccccHHHHHHhhcccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhC
Confidence 4677788887776532 2345676554 8999999999999999999999999988 4688899999998
Q ss_pred hcC-CcccccccCCCCCCcccCCCCCCC--CCCCcc--hhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHC
Q 024066 182 SSS-ARCWSSDSYNPVPGVMEGVPASRN--YGGGFA--SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCEN 252 (273)
Q Consensus 182 ~~~-~~s~~~~~~~~~~~~~~~~~~~~~--~~~~f~--~~~~~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~ 252 (273)
.+. -+||+++...+ .+.+...-.+ +++.|. ++.....+|.++..+-+.|+|+|.+..++..|+.-...
T Consensus 351 ~GcIIRs~lL~~i~~---a~~~~~~l~nl~~~~~~~~~i~~~~~~~R~vV~~a~~~gip~P~ls~aL~y~d~~~~~ 423 (459)
T PRK09287 351 GGCIIRAQFLQKITD---AYEANPDLANLLLDPYFKDILEEYQDALRRVVALAVQAGIPVPAFSSALSYYDSYRTA 423 (459)
T ss_pred CCCEEeHHHHHHHHH---HHHhCCCchhhcCCHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Confidence 875 56666543221 1110000001 112222 33445567889999999999999999999777765443
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.054 Score=47.40 Aligned_cols=211 Identities=17% Similarity=0.150 Sum_probs=117.3
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCC
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 84 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~ 84 (273)
.|...+++..+++.++|+||+||.. ..+.+|+....+ . .++++||-.-..-+- ..+.+++..
T Consensus 48 ~g~~~~~~~~~~~~~advv~LavKP-q~~~~vl~~l~~-~-----~~~~lvISiaAGv~~--~~l~~~l~~--------- 109 (266)
T COG0345 48 YGVVTTTDNQEAVEEADVVFLAVKP-QDLEEVLSKLKP-L-----TKDKLVISIAAGVSI--ETLERLLGG--------- 109 (266)
T ss_pred cCCcccCcHHHHHhhCCEEEEEeCh-HhHHHHHHHhhc-c-----cCCCEEEEEeCCCCH--HHHHHHcCC---------
Confidence 4566677888999999999999995 677888865333 1 245677744333322 234444321
Q ss_pred CCCceEEEecCCCCHHHHhcCceEEEeec--CHHHHHHHHHHHHHhcCCeEEeCC--cChHHHHHHHHHHHHHHHHHHHH
Q 024066 85 WENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKPLFLSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVS 160 (273)
Q Consensus 85 ~~g~~~ldapv~G~~~~a~~g~l~~~vgG--~~~~~~~~~~~l~~~~~~i~~~G~--~g~a~~~Kl~~n~~~~~~~~~~~ 160 (273)
.. +---+--.+....+|...+..+- +++..+.+..+|+.+|. ++.+.+ .-....+ .-..=..+..+.
T Consensus 110 ---~~-vvR~MPNt~a~vg~g~t~i~~~~~~~~~~~~~v~~l~~~~G~-v~~v~E~~~da~Tai----sGSgPAyv~~~i 180 (266)
T COG0345 110 ---LR-VVRVMPNTPALVGAGVTAISANANVSEEDKAFVEALLSAVGK-VVEVEESLMDAVTAL----SGSGPAYVFLFI 180 (266)
T ss_pred ---Cc-eEEeCCChHHHHcCcceeeecCccCCHHHHHHHHHHHHhcCC-eEEechHHhhHHHHH----hcCCHHHHHHHH
Confidence 11 11123345556666664444433 45677889999999998 677765 2222222 111222345566
Q ss_pred HHHH-HHHHcCCCHHHHHHHHhhcCCccc-ccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChH
Q 024066 161 EALT-LGQSLGISASTLTKILNSSSARCW-SSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPL 238 (273)
Q Consensus 161 Ea~~-la~~~Gl~~~~~~~~l~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~ 238 (273)
|++. .+.+.|++.++-.+.......++. +......-|..+. ++=-+|+-+-- ..+...++.|++.-+
T Consensus 181 Eal~~agv~~Gl~~~~A~~l~~~t~~Gaakll~e~~~~p~~Lr----~~VtSPGGtTi-------agl~~le~~g~~~~v 249 (266)
T COG0345 181 EALADAGVRLGLPREEARELAAQTVAGAAKLLLESGEHPAELR----DQVTSPGGTTI-------AGLRVLEEDGFRGAV 249 (266)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH----HhCcCCCchHH-------HHHHHHHHhChHHHH
Confidence 6664 466899999998887766532211 1110000111111 11113322211 123344477888788
Q ss_pred HHHHHHHHHHHHHCC
Q 024066 239 TSQAQDIYAKLCENG 253 (273)
Q Consensus 239 ~~~~~~~~~~a~~~G 253 (273)
.++...-++++.+-|
T Consensus 250 ~~av~aa~~r~~el~ 264 (266)
T COG0345 250 IEAVEAAYKRSEELG 264 (266)
T ss_pred HHHHHHHHHHHHHhc
Confidence 888888888776643
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.012 Score=51.77 Aligned_cols=150 Identities=9% Similarity=0.048 Sum_probs=84.4
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCC-CCHHHHHHHHHHHhhchhhhccCCC
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST-IDPQTSRNISAAVSNCILKEKKDSW 85 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST-~~P~~~~~l~~~~~~~g~~~~~g~~ 85 (273)
.+.+.+..++++++|+||+|+| +..+.+++.. +.+.+ ..+++||.... ++.+ ++.+.+..
T Consensus 52 ~~~~~~~~e~~~~aDvVilavp-p~~~~~vl~~---l~~~l--~~~~~ivS~~aGi~~~---~l~~~~~~---------- 112 (277)
T PRK06928 52 VELADNEAEIFTKCDHSFICVP-PLAVLPLLKD---CAPVL--TPDRHVVSIAAGVSLD---DLLEITPG---------- 112 (277)
T ss_pred eEEeCCHHHHHhhCCEEEEecC-HHHHHHHHHH---HHhhc--CCCCEEEEECCCCCHH---HHHHHcCC----------
Confidence 3456788889999999999999 4577888753 33322 23456665544 4444 44444321
Q ss_pred CCceEEEecCCCCHHHHhcCceEEEeec--CHHHHHHHHHHHHHhcCCeEEeCC--cChHHHHHHHHHHHHHHHHHHHHH
Q 024066 86 ENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKPLFLSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSE 161 (273)
Q Consensus 86 ~g~~~ldapv~G~~~~a~~g~l~~~vgG--~~~~~~~~~~~l~~~~~~i~~~G~--~g~a~~~Kl~~n~~~~~~~~~~~E 161 (273)
.. +---+--.|....+|...+..+. +++..+.++.+|+.+|. ++++.+ .....++= ...-..+..+.|
T Consensus 113 --~~-vvR~MPN~~~~~g~g~t~~~~~~~~~~~~~~~v~~l~~~~G~-~~~v~E~~~d~~tal~----gsgPA~~~~~~~ 184 (277)
T PRK06928 113 --LQ-VSRLIPSLTSAVGVGTSLVAHAETVNEANKSRLEETLSHFSH-VMTIREENMDIASNLT----SSSPGFIAAIFE 184 (277)
T ss_pred --CC-EEEEeCccHHHHhhhcEEEecCCCCCHHHHHHHHHHHHhCCC-EEEEchhhCceeeeee----cCHHHHHHHHHH
Confidence 11 22223344555566654443332 34567789999999998 456643 22121111 111122334444
Q ss_pred HHH-HHHHc-CCCHHHHHHHHhhc
Q 024066 162 ALT-LGQSL-GISASTLTKILNSS 183 (273)
Q Consensus 162 a~~-la~~~-Gl~~~~~~~~l~~~ 183 (273)
++. .+.+. |++.++-.+++...
T Consensus 185 al~~a~~~~ggl~~~~a~~l~~~~ 208 (277)
T PRK06928 185 EFAEAAVRNSSLSDEEAFQFLNFA 208 (277)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHH
Confidence 443 35566 79999877777654
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.015 Score=51.56 Aligned_cols=214 Identities=12% Similarity=0.106 Sum_probs=109.7
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCce
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPV 89 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~ 89 (273)
.+++.++ +.+|+||+|++.. ++++++.. +.+.. ..+.+||.+... ......+.+.+.+... -. +..
T Consensus 58 ~~~~~~~-~~~d~vila~k~~-~~~~~~~~---l~~~l--~~~~~iv~~~nG-~~~~~~l~~~~~~~~i--~~----~~~ 123 (304)
T PRK06522 58 ADDPAEL-GPQDLVILAVKAY-QLPAALPS---LAPLL--GPDTPVLFLQNG-VGHLEELAAYIGPERV--LG----GVV 123 (304)
T ss_pred CCChhHc-CCCCEEEEecccc-cHHHHHHH---Hhhhc--CCCCEEEEecCC-CCcHHHHHHhcCcccE--EE----EEE
Confidence 4566665 8899999999976 55667653 33321 233455544433 2222334444322100 00 112
Q ss_pred EEEecCCCC--HHHHhcCceEEEeecCH---HHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHH-----------
Q 024066 90 MLDAPVSGG--VLAAEAGTLTFMVGGSE---DAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA----------- 153 (273)
Q Consensus 90 ~ldapv~G~--~~~a~~g~l~~~vgG~~---~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~----------- 153 (273)
+..+-..+. ......|. +.+|..+ +..+.+..+|+..+.++...-++-...-.|++.|..+.
T Consensus 124 ~~~~~~~~p~~v~~~~~g~--~~ig~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g 201 (304)
T PRK06522 124 THAAELEGPGVVRHTGGGR--LKIGEPDGESAAAEALADLLNAAGLDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNG 201 (304)
T ss_pred EEeeEecCCCEEEEcCCCC--EEEeCCCCCcHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChh
Confidence 222212211 11122233 4455422 23556677777766655444447788888888775432
Q ss_pred ----------HHHHHHHHHHHHHHHcCCCH--HHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHH
Q 024066 154 ----------VSMLGVSEALTLGQSLGISA--STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKD 221 (273)
Q Consensus 154 ----------~~~~~~~Ea~~la~~~Gl~~--~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD 221 (273)
.....+.|...++++.|+++ +.+.+.+....... ....+.|+.. +..+.. .-++. =
T Consensus 202 ~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~~~~~~~~~~~-----~~~~sSm~~D-~~~gr~---tEid~---i 269 (304)
T PRK06522 202 ELLADPDYRALIRALMEEVAAVAEAEGVHLSVEEVREYVRQVIQKT-----AANTSSMLQD-LEAGRP---TEIDA---I 269 (304)
T ss_pred HHhcCccHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhhcc-----CCCCchHHHH-HHcCCC---cccch---h
Confidence 23456889999999999764 44444333211000 0001112110 011111 00111 1
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 024066 222 LNLALASAKEVGVDCPLTSQAQDIYAKLCE 251 (273)
Q Consensus 222 ~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~ 251 (273)
...+++.++++|+++|..+...+.++...+
T Consensus 270 ~G~~v~~a~~~gv~~P~~~~l~~~~~~~~~ 299 (304)
T PRK06522 270 VGYVLRRGRKHGIPTPLNDALYGLLKAKES 299 (304)
T ss_pred ccHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 344789999999999999998888765543
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.015 Score=52.54 Aligned_cols=151 Identities=13% Similarity=0.094 Sum_probs=88.2
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCC
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 84 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~ 84 (273)
.|.+.. |+.|++++||+|+++||+... .+++.. .+.+.+ +++++++-++-.+....+. ...+
T Consensus 60 ~G~~~~-s~~eaa~~ADVVvLaVPd~~~-~~V~~~--~I~~~L--k~g~iL~~a~G~~i~~~~~---~p~~--------- 121 (330)
T PRK05479 60 DGFEVL-TVAEAAKWADVIMILLPDEVQ-AEVYEE--EIEPNL--KEGAALAFAHGFNIHFGQI---VPPA--------- 121 (330)
T ss_pred CCCeeC-CHHHHHhcCCEEEEcCCHHHH-HHHHHH--HHHhcC--CCCCEEEECCCCChhhcee---ccCC---------
Confidence 466654 899999999999999998765 777732 365553 3566776555544444321 1100
Q ss_pred CCCceEEE-ecCCCCH-----HHHhcCceEEE-eecC--HHHHHHHHHHHHHhcCCeEE-eCC-cChHHHHHHH--HHHH
Q 024066 85 WENPVMLD-APVSGGV-----LAAEAGTLTFM-VGGS--EDAYQAAKPLFLSMGKNTIY-CGG-AGNGAAAKIC--NNLT 151 (273)
Q Consensus 85 ~~g~~~ld-apv~G~~-----~~a~~g~l~~~-vgG~--~~~~~~~~~~l~~~~~~i~~-~G~-~g~a~~~Kl~--~n~~ 151 (273)
++.++- +|=.-+. -....|-..++ +..+ .++.+.+..+++.+|..... +.. ...-.-..|. ..++
T Consensus 122 --~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl 199 (330)
T PRK05479 122 --DVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVL 199 (330)
T ss_pred --CCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHH
Confidence 122222 3433222 11344554555 5666 67889999999999986320 111 1111101111 2344
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHH
Q 024066 152 MAVSMLGVSEALTLGQSLGISAST 175 (273)
Q Consensus 152 ~~~~~~~~~Ea~~la~~~Gl~~~~ 175 (273)
..+...++..++......|.+|+.
T Consensus 200 ~gg~~~l~~~~~e~l~eaG~~pe~ 223 (330)
T PRK05479 200 CGGLTELIKAGFETLVEAGYQPEM 223 (330)
T ss_pred hhHHHHHHHHHHHHHHHcCCCHHH
Confidence 555567777778888999999875
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0037 Score=59.17 Aligned_cols=135 Identities=14% Similarity=0.114 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHhcC--CeEEeCCcCh------HHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHH
Q 024066 115 EDAYQAAKPLFLSMGK--NTIYCGGAGN------GAAAKICNNLTMAVSMLGVSEALTLGQS------LGISASTLTKIL 180 (273)
Q Consensus 115 ~~~~~~~~~~l~~~~~--~i~~~G~~g~------a~~~Kl~~n~~~~~~~~~~~Ea~~la~~------~Gl~~~~~~~~l 180 (273)
.++|.|+.+.++.... ...|.|+.+. ++.+|.+.|.+..+.+.+++|.+.+.++ .++|..++.++.
T Consensus 278 ~av~~R~~S~~k~~r~~~~~~~~gp~~~~~~~~~~~~i~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iW 357 (467)
T TIGR00873 278 ESVFARYLSSLKEERVAASKVLSGPLAPEPAVDKEEFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGEIALIW 357 (467)
T ss_pred HHHHHHhccccHHHHHHhhcccCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHh
Confidence 4567777777766432 1234565442 8999999999999999999999999988 889999999999
Q ss_pred hhcC-CcccccccCCCCCCcccCCCCCCC--CCCCcc--hhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHC
Q 024066 181 NSSS-ARCWSSDSYNPVPGVMEGVPASRN--YGGGFA--SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCEN 252 (273)
Q Consensus 181 ~~~~-~~s~~~~~~~~~~~~~~~~~~~~~--~~~~f~--~~~~~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~ 252 (273)
+.+. -+||+++...+ .+.+...-.+ +++.|. +......+|.++..+-+.|+|+|.+..++..|+.-...
T Consensus 358 r~GcIIrs~lL~~i~~---a~~~~~~l~~l~~~~~~~~~i~~~~~~~r~vV~~a~~~gip~P~ls~aL~y~~~~~s~ 431 (467)
T TIGR00873 358 RGGCIIRSGFLDKITK---AFAENPDLANLLLAPYFKDALKDAQSGWRRVVALAIEYGIPVPAFSAALSFYDGYRTA 431 (467)
T ss_pred CCCceeeHhHHHHHHH---HHHcCCChhhhcCCHHHHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Confidence 9875 56665543221 1110000001 112222 33445667999999999999999999999888876653
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.027 Score=51.69 Aligned_cols=121 Identities=13% Similarity=0.186 Sum_probs=78.5
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCce
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPV 89 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~ 89 (273)
..++.+++++||+||+|+|-. .+.+++..-....+.+ +++.+|.|.+++--.-.+.+. +. +..
T Consensus 42 ~~~~~~~v~~aDlVilavPv~-~~~~~l~~l~~~~~~l--~~~~iVtDVgSvK~~i~~~~~----~~----------~~~ 104 (370)
T PRK08818 42 SLDPATLLQRADVLIFSAPIR-HTAALIEEYVALAGGR--AAGQLWLDVTSIKQAPVAAML----AS----------QAE 104 (370)
T ss_pred cCCHHHHhcCCCEEEEeCCHH-HHHHHHHHHhhhhcCC--CCCeEEEECCCCcHHHHHHHH----hc----------CCC
Confidence 456788999999999999975 5555665321121112 456899999999866665542 11 135
Q ss_pred EEE-ecCCCCHH-HHhcCceEEEeecC-HHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHH
Q 024066 90 MLD-APVSGGVL-AAEAGTLTFMVGGS-EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKIC 147 (273)
Q Consensus 90 ~ld-apv~G~~~-~a~~g~l~~~vgG~-~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~ 147 (273)
|+- =|+.|+.. ..-++...+++-+. .+.++.++.+++.+|.+++.+.+-..=..+-.+
T Consensus 105 fVG~HPMaG~E~s~lf~g~~~iltp~~~~~~~~~v~~l~~~~Ga~v~~~~aeeHD~~~A~v 165 (370)
T PRK08818 105 VVGLHPMTAPPKSPTLKGRVMVVCEARLQHWSPWVQSLCSALQAECVYATPEHHDRVMALV 165 (370)
T ss_pred EEeeCCCCCCCCCcccCCCeEEEeCCCchhHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHH
Confidence 666 58888753 33346656776654 345678899999999988888553333333334
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.04 Score=49.41 Aligned_cols=203 Identities=11% Similarity=0.081 Sum_probs=108.5
Q ss_pred HHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEEec
Q 024066 15 EVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAP 94 (273)
Q Consensus 15 e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~~ldap 94 (273)
+....+|+||+|++..+ +.+++..-..++ .+. .+|+.+-. .-+..+.+.+.+.+. + -..++.++.+.
T Consensus 68 ~~~~~~D~vilavK~~~-~~~~~~~l~~~~----~~~-~~iv~lqN-G~~~~e~l~~~~~~~----~--v~~g~~~~~a~ 134 (313)
T PRK06249 68 EDMPPCDWVLVGLKTTA-NALLAPLIPQVA----APD-AKVLLLQN-GLGVEEQLREILPAE----H--LLGGLCFICSN 134 (313)
T ss_pred hhcCCCCEEEEEecCCC-hHhHHHHHhhhc----CCC-CEEEEecC-CCCcHHHHHHHCCCC----c--EEEEeeeEeEe
Confidence 34668999999999874 355543212222 123 34443322 233334455544221 0 00023344444
Q ss_pred CCCCH--HHHhcCceEEEee---cC------HHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHH----------
Q 024066 95 VSGGV--LAAEAGTLTFMVG---GS------EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA---------- 153 (273)
Q Consensus 95 v~G~~--~~a~~g~l~~~vg---G~------~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~---------- 153 (273)
..+.. .....|. +.+| |+ .+..+++..+|+.-+-.+....++-...-.|++.|..+.
T Consensus 135 ~~~pg~v~~~~~g~--~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~ 212 (313)
T PRK06249 135 RVGPGVIHHLAYGR--VNLGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNAST 212 (313)
T ss_pred cCCCeEEEECCCCc--EEEecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCCh
Confidence 33321 1122233 3333 32 345566777777777666666668888888998775432
Q ss_pred -----------HHHHHHHHHHHHHHHcCCCH-----HHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCC--cch
Q 024066 154 -----------VSMLGVSEALTLGQSLGISA-----STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG--FAS 215 (273)
Q Consensus 154 -----------~~~~~~~Ea~~la~~~Gl~~-----~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--f~~ 215 (273)
.....+.|+.+++++.|++. +.+++++...+.. .+.|+. |+..+ .-+
T Consensus 213 g~l~~~~~~~~l~~~~~~E~~~va~a~Gi~~~~~~~~~~~~~~~~~~~~---------~sSM~q------D~~~gr~tEi 277 (313)
T PRK06249 213 DPLMADPDSRALIRALMAEVIQGAAACGHTLPEGYADHMLAVTERMPDY---------RPSMYH------DFEEGRPLEL 277 (313)
T ss_pred HHHHhCccHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhhcCCCC---------CChHHH------HHHCCCcccH
Confidence 23456889999999999873 2233333221110 112221 11111 112
Q ss_pred hhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 024066 216 KLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLC 250 (273)
Q Consensus 216 ~~~~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~ 250 (273)
+. =...+++.++++|+++|..+...++++...
T Consensus 278 d~---i~G~vv~~a~~~Gi~~P~~~~l~~~l~~~e 309 (313)
T PRK06249 278 EA---IYANPLAAARAAGCAMPRVEMLYQALEFLD 309 (313)
T ss_pred HH---HhhHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 22 245678999999999999999988776543
|
|
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.032 Score=49.12 Aligned_cols=213 Identities=13% Similarity=0.112 Sum_probs=106.0
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhchhhhccCCCCCc
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENP 88 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~-ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~ 88 (273)
.+++.+ ....|+||+|++.. ++.+++.. +.+.+ ..+.+||-+ ..... -+.+.+.+... + ...|+
T Consensus 51 ~~~~~~-~~~~D~iiv~vKs~-~~~~~l~~---l~~~l--~~~~~iv~~qNG~g~--~~~l~~~~~~~----~--v~~g~ 115 (293)
T TIGR00745 51 ATSPEE-LPPADLVIITVKAY-QTEEAAAL---LLPLI--GKNTKVLFLQNGLGH--EERLRELLPAR----R--ILGGV 115 (293)
T ss_pred ccChhh-cCCCCEEEEeccch-hHHHHHHH---hHhhc--CCCCEEEEccCCCCC--HHHHHHHhCcc----C--EEEEE
Confidence 345555 56899999999987 56666643 33322 123444433 33333 23444444210 0 00012
Q ss_pred eEEEecCCCCHHHHhcCceEEEeecCH---HHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHH-------------
Q 024066 89 VMLDAPVSGGVLAAEAGTLTFMVGGSE---DAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM------------- 152 (273)
Q Consensus 89 ~~ldapv~G~~~~a~~g~l~~~vgG~~---~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~------------- 152 (273)
.+..+-..+.-.-...+.-.+.+|..+ +..+++..+|+.-+-++....+.-...-.|++.|..+
T Consensus 116 ~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~ 195 (293)
T TIGR00745 116 VTHGAVREEPGVVHHAGLGATKIGDYVGENEAVEALAELLNEAGIPAELHGDILAAIWKKLLVNAAINPLTALLDCKNGE 195 (293)
T ss_pred EEEeeEEcCCcEEEEeccccEEEecCCCchHHHHHHHHHHHhCCCCCEecchHHHHHHHHHhheechhHHHHHHCCccce
Confidence 222222221100000111124555532 3345556666655555555556777888888877632
Q ss_pred --------HHHHHHHHHHHHHHHHcCCCH--HHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHH
Q 024066 153 --------AVSMLGVSEALTLGQSLGISA--STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDL 222 (273)
Q Consensus 153 --------~~~~~~~~Ea~~la~~~Gl~~--~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~ 222 (273)
......+.|...++++.|+++ +.+.+.+......+. . ..+.|+. |+..+-.. -..-=.
T Consensus 196 l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~~~~~~~~~~~~--~---~~sSm~~------D~~~gr~t-Eid~i~ 263 (293)
T TIGR00745 196 LLENPEARELLRRLMDEVVRVARAEGVDLPDDEVEELVRAVIRMTA--E---NTSSMLQ------DLLRGRRT-EIDAIN 263 (293)
T ss_pred eccChhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--C---CCChHHH------HHHcCCcc-hHHHhc
Confidence 233456889999999999764 333333332110000 0 0011211 11111000 011114
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHH
Q 024066 223 NLALASAKEVGVDCPLTSQAQDIYAKL 249 (273)
Q Consensus 223 ~~~~~~a~~~g~~~~~~~~~~~~~~~a 249 (273)
..+++.+++.|+++|..+...+.++..
T Consensus 264 G~~v~~a~~~gv~~P~~~~l~~~~~~~ 290 (293)
T TIGR00745 264 GAVVRLAEKLGIDAPVNRTLYALLKAL 290 (293)
T ss_pred cHHHHHHHHcCCCCChHHHHHHHHHHh
Confidence 467889999999999999888777543
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.014 Score=57.78 Aligned_cols=117 Identities=15% Similarity=0.154 Sum_probs=76.5
Q ss_pred cCCCCCCCCHHHHH-hcCCEEEEeCCChHHHHHHHcCCCCcc-cCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhc
Q 024066 4 DMGVPTKETPFEVA-EASDVVITMLPSSSHVLDVYNGPNGLL-QGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEK 81 (273)
Q Consensus 4 ~~Ga~~~~s~~e~~-~~advvi~~v~~~~av~~v~~~~~g~l-~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~ 81 (273)
+.|+....++.+++ .++|+||+|+|. .++.+++.. +. +.+ +++.+|+|++|+.....+.+.+.+.+
T Consensus 92 ~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~~---l~~~~l--~~g~iVvDv~SvK~~~~~~l~~~l~~------ 159 (667)
T PLN02712 92 SLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLKS---LPLQRL--KRNTLFVDVLSVKEFAKNLLLDYLPE------ 159 (667)
T ss_pred HcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHHh---hhhhcC--CCCeEEEECCCCcHHHHHHHHHhcCC------
Confidence 35777778888865 569999999996 577888764 22 222 35689999999987666666655422
Q ss_pred cCCCCCceEEE-ecCCCCHH--HHhcCceEEEee---cCH----HHHHHHHHHHHHhcCCeEEeCC
Q 024066 82 KDSWENPVMLD-APVSGGVL--AAEAGTLTFMVG---GSE----DAYQAAKPLFLSMGKNTIYCGG 137 (273)
Q Consensus 82 ~g~~~g~~~ld-apv~G~~~--~a~~g~l~~~vg---G~~----~~~~~~~~~l~~~~~~i~~~G~ 137 (273)
++.|+- =|+.|... ..-.+...++.+ +++ +.++.++.+++.+|.+++.+.+
T Consensus 160 -----~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~ms~ 220 (667)
T PLN02712 160 -----DFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKSFLEVFEREGCKMVEMSC 220 (667)
T ss_pred -----CCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHHHHHHHHHHcCCEEEEeCH
Confidence 244544 68888752 122233344443 332 2345667999999998888754
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.00078 Score=53.65 Aligned_cols=60 Identities=13% Similarity=0.031 Sum_probs=42.6
Q ss_pred CCCCHHHHHhcCCEEEEeCCChHH-HHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 024066 9 TKETPFEVAEASDVVITMLPSSSH-VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 76 (273)
Q Consensus 9 ~~~s~~e~~~~advvi~~v~~~~a-v~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~ 76 (273)
...++.++++++|+||+|+|.+.. ++.+.+....+ +.+++++|+||+.+.+ ++.+.++++
T Consensus 71 ~~~~~~~~~~~~Dvvi~~~~~~~~~~~~~~~~~~~~------~~~~~v~D~~~~~~~~--~l~~~~~~~ 131 (155)
T cd01065 71 AYLDLEELLAEADLIINTTPVGMKPGDELPLPPSLL------KPGGVVYDVVYNPLET--PLLKEARAL 131 (155)
T ss_pred eecchhhccccCCEEEeCcCCCCCCCCCCCCCHHHc------CCCCEEEEcCcCCCCC--HHHHHHHHC
Confidence 345777788999999999999875 44443322111 3568999999996665 788877653
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0036 Score=55.97 Aligned_cols=62 Identities=18% Similarity=0.216 Sum_probs=54.3
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
..++.|++++||+|++|+|..++.+.++. .+.++.+ ++|.++||+|+..+-....+.+.+.+
T Consensus 164 ~~~l~ell~~aDiv~~~lp~t~~T~~li~--~~~l~~m--k~ga~lIN~sRG~~vd~~aL~~aL~~ 225 (303)
T PRK06436 164 YMEPEDIMKKSDFVLISLPLTDETRGMIN--SKMLSLF--RKGLAIINVARADVVDKNDMLNFLRN 225 (303)
T ss_pred cCCHHHHHhhCCEEEECCCCCchhhcCcC--HHHHhcC--CCCeEEEECCCccccCHHHHHHHHHc
Confidence 57899999999999999999999998874 3566665 46789999999999999999999976
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0061 Score=56.22 Aligned_cols=67 Identities=13% Similarity=0.184 Sum_probs=58.1
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
.|++...++.|+++.||+|++++|..++.+.++. ...++.+ ++|.++||++....-....+.+.+.+
T Consensus 234 ~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~--~~~l~~m--k~ga~lIN~aRG~iVDe~AL~~AL~s 300 (385)
T PRK07574 234 LGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFD--ADVLSRM--KRGSYLVNTARGKIVDRDAVVRALES 300 (385)
T ss_pred cCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhC--HHHHhcC--CCCcEEEECCCCchhhHHHHHHHHHh
Confidence 4666678999999999999999999999999884 3567765 56789999999999999999999976
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.023 Score=53.91 Aligned_cols=134 Identities=10% Similarity=0.088 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHhcC--CeEEeCCc--------ChHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hc--CCCHHHHHH
Q 024066 115 EDAYQAAKPLFLSMGK--NTIYCGGA--------GNGAAAKICNNLTMAVSMLGVSEALTLGQ----SL--GISASTLTK 178 (273)
Q Consensus 115 ~~~~~~~~~~l~~~~~--~i~~~G~~--------g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~----~~--Gl~~~~~~~ 178 (273)
.+.|.|..+.++.... ...|.|+. +.++.+|.+.|.+..+.+.+++|.+.+-+ ++ ++|..++..
T Consensus 282 ~a~~~R~~S~~k~~r~~~~~~~~gp~~~~~~~~~~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~y~w~ldl~~ia~ 361 (470)
T PTZ00142 282 ASVDARNISALKEERTKASSHLAGPNPANKTETEDKKYFIDDLKNALYCSKIISYTQGFFLIKEASKEFGWNLNLGEIAR 361 (470)
T ss_pred HHHHHHHhhhhHHHHHHhccccCCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 3456777777766432 12345553 67999999999999999999999999877 34 899999999
Q ss_pred HHhhcC-CcccccccCCCCCCcccCCCCCCC--CCCCcc--hhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 024066 179 ILNSSS-ARCWSSDSYNPVPGVMEGVPASRN--YGGGFA--SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCE 251 (273)
Q Consensus 179 ~l~~~~-~~s~~~~~~~~~~~~~~~~~~~~~--~~~~f~--~~~~~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~ 251 (273)
+.+.+. -+||+++.... .+.+...-.+ +++.|. +......+|.++..+-+.|+|+|.+.+++..|+.-..
T Consensus 362 iWr~GcIIRs~lL~~i~~---a~~~~~~l~nl~~~~~~~~~i~~~~~~~R~vV~~a~~~gip~P~~s~aL~y~~s~~~ 436 (470)
T PTZ00142 362 IWRGGCIIRAVFLDRIKN---AFKKNPQLDLLFLDPDFNDELKNKQPSWRKVVSMATKNGIPTPAFSASLAYYQMYRS 436 (470)
T ss_pred HhCCCceeeHhHHHHHHH---HHhcCCChhhhcCCHHHHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Confidence 999875 56666543211 1110000000 112222 3344556789999999999999999999996665443
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.007 Score=55.84 Aligned_cols=67 Identities=15% Similarity=0.186 Sum_probs=58.4
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
.|+...+++.|++++||+|++|+|..++.+.++.. ..++.+ ++|.++||++....-....+.+.+.+
T Consensus 241 ~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~--~~l~~m--k~ga~lIN~aRG~iVDe~AL~~AL~s 307 (386)
T PLN03139 241 TGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNK--ERIAKM--KKGVLIVNNARGAIMDTQAVADACSS 307 (386)
T ss_pred cCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCH--HHHhhC--CCCeEEEECCCCchhhHHHHHHHHHc
Confidence 46777789999999999999999999999998843 577765 56799999999999999999999976
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0093 Score=50.03 Aligned_cols=123 Identities=17% Similarity=0.228 Sum_probs=74.9
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCC---------------CHHHHHHHHHHHh
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI---------------DPQTSRNISAAVS 74 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~---------------~P~~~~~l~~~~~ 74 (273)
..++.++++.+||||+.||-+ ++.+++.. +... .+|+|+||.+.- .-..++.+++.+.
T Consensus 51 ~~~~~dA~~~aDVVvLAVP~~-a~~~v~~~---l~~~---~~~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp 123 (211)
T COG2085 51 GGSNEDAAALADVVVLAVPFE-AIPDVLAE---LRDA---LGGKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLP 123 (211)
T ss_pred cCChHHHHhcCCEEEEeccHH-HHHhHHHH---HHHH---hCCeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCC
Confidence 457789999999999999975 55666643 3322 357999998874 1122333444332
Q ss_pred hchhhhccCCCCCceEEEecCCCCHHHHhcCceEEEeecCH-HHHHHHHHHHHHhcCCeEEeCCcChHHHHHH
Q 024066 75 NCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSE-DAYQAAKPLFLSMGKNTIYCGGAGNGAAAKI 146 (273)
Q Consensus 75 ~~g~~~~~g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~-~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl 146 (273)
....- + -++-+.+-..-....-. ++..+++.||+ ++-+.+..+.+.+|-+-+.+|+..++..+--
T Consensus 124 ~akVV--k----AFn~i~a~~l~~~~~~~-~~~~v~vagDD~~Ak~~v~~L~~~iG~~~ld~G~L~~a~~le~ 189 (211)
T COG2085 124 GAKVV--K----AFNTIPAAVLADLAKPG-GRRDVLVAGDDAEAKAVVAELAEDIGFRPLDAGPLENARILEP 189 (211)
T ss_pred Ccchh--h----hhcccCHHHhccCCCcC-CceeEEEecCcHHHHHHHHHHHHhcCcceeecccccccccccc
Confidence 21000 0 02333333322211111 45677777765 6889999999999988888898766655543
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.021 Score=48.52 Aligned_cols=122 Identities=21% Similarity=0.222 Sum_probs=71.5
Q ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHH---------------HHHHHHHHHhh
Q 024066 11 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ---------------TSRNISAAVSN 75 (273)
Q Consensus 11 ~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~---------------~~~~l~~~~~~ 75 (273)
.+..++++++|+||+|+|.. +..+++.. +.+. ..+++|||++..-+. .++++++.+..
T Consensus 60 ~~~~ea~~~aDvVilavp~~-~~~~~l~~---l~~~---l~~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~ 132 (219)
T TIGR01915 60 ADNAEAAKRADVVILAVPWD-HVLKTLES---LRDE---LSGKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPE 132 (219)
T ss_pred eChHHHHhcCCEEEEECCHH-HHHHHHHH---HHHh---ccCCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCC
Confidence 46788899999999999976 55666643 3222 134789988665432 12445554421
Q ss_pred chhhhccCCCCCceEEEecCCCCHHHHhcCceEEEeecC-HHHHHHHHHHHHHh-cCCeEEeCCcChHHHHHH
Q 024066 76 CILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGS-EDAYQAAKPLFLSM-GKNTIYCGGAGNGAAAKI 146 (273)
Q Consensus 76 ~g~~~~~g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~-~~~~~~~~~~l~~~-~~~i~~~G~~g~a~~~Kl 146 (273)
. .+ - -..+..+.+.+..++ . ......+++.|| +++-+++..+.+.+ |-+.+++|+...+-.+--
T Consensus 133 ~---~~-V-Vka~~~~~a~~~~~~-~-~~~~~~~~v~Gdd~~ak~~v~~L~~~~~G~~~vd~G~l~~a~~~e~ 198 (219)
T TIGR01915 133 T---SR-V-VAAFHNLSAVLLQDV-D-DEVDCDVLVCGDDEEAKEVVAELAGRIDGLRALDAGPLENAAIVES 198 (219)
T ss_pred C---Ce-E-eeccccCCHHHhcCC-C-CCCCCCEEEECCCHHHHHHHHHHHHhcCCCCcccCCchhhHHHHHh
Confidence 0 00 0 000222333333332 1 112345667776 56788899999999 888899998766655433
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.15 Score=45.05 Aligned_cols=107 Identities=13% Similarity=0.207 Sum_probs=76.6
Q ss_pred HHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEE-
Q 024066 14 FEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD- 92 (273)
Q Consensus 14 ~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~~ld- 92 (273)
.+++..+|+||+|||=. +..+++.. +.+++ ++|.+|.|.+++--.-.+.+.+...+ +.+|+-
T Consensus 59 ~~~~~~aD~VivavPi~-~~~~~l~~---l~~~l--~~g~iv~Dv~S~K~~v~~a~~~~~~~-----------~~~~vg~ 121 (279)
T COG0287 59 AEAAAEADLVIVAVPIE-ATEEVLKE---LAPHL--KKGAIVTDVGSVKSSVVEAMEKYLPG-----------DVRFVGG 121 (279)
T ss_pred hhhcccCCEEEEeccHH-HHHHHHHH---hcccC--CCCCEEEecccccHHHHHHHHHhccC-----------CCeeEec
Confidence 67778899999999975 55667653 44442 56789999999988877777665432 125665
Q ss_pred ecCCCC--HHHHhcCceEEEeecC---HHHHHHHHHHHHHhcCCeEEeCC
Q 024066 93 APVSGG--VLAAEAGTLTFMVGGS---EDAYQAAKPLFLSMGKNTIYCGG 137 (273)
Q Consensus 93 apv~G~--~~~a~~g~l~~~vgG~---~~~~~~~~~~l~~~~~~i~~~G~ 137 (273)
=|+.|+ ...--+++..++.=++ .+.+++++.+++.+|.+++++-+
T Consensus 122 HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~~~~~~~~ga~~v~~~~ 171 (279)
T COG0287 122 HPMFGPEADAGLFENAVVVLTPSEGTEKEWVEEVKRLWEALGARLVEMDA 171 (279)
T ss_pred CCCCCCcccccccCCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEcCh
Confidence 589998 4444455656665553 45788899999999998888855
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.0088 Score=54.18 Aligned_cols=66 Identities=18% Similarity=0.231 Sum_probs=53.7
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
+++..+++.|++++||+|++|+|.....+.++. .+.++.+ ++|.++||+|+..+-....+.+.+.+
T Consensus 187 ~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~--~~~l~~m--k~gailIN~sRG~~vd~~aL~~aL~~ 252 (332)
T PRK08605 187 YVDYKDTIEEAVEGADIVTLHMPATKYNHYLFN--ADLFKHF--KKGAVFVNCARGSLVDTKALLDALDN 252 (332)
T ss_pred hccccCCHHHHHHhCCEEEEeCCCCcchhhhcC--HHHHhcC--CCCcEEEECCCCcccCHHHHHHHHHh
Confidence 345567899999999999999999988776542 2356654 46789999999999999999999975
|
|
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.19 Score=43.51 Aligned_cols=155 Identities=19% Similarity=0.254 Sum_probs=99.5
Q ss_pred cccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHH-HHHHHhhchhhh
Q 024066 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRN-ISAAVSNCILKE 80 (273)
Q Consensus 2 l~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~-l~~~~~~~g~~~ 80 (273)
+.++|+++.++-.|+++..++.++..|=..+.-.+.. .++++. +.|.+|.++-|++|-.--. +...++-.
T Consensus 65 vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Iar---ei~~hv--pEgAVicnTCT~sp~vLy~~LE~~Lr~k---- 135 (340)
T COG4007 65 VEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIAR---EILEHV--PEGAVICNTCTVSPVVLYYSLEGELRTK---- 135 (340)
T ss_pred HHhcCcEEecCchhhhhcceEEEEecccchhhHHHHH---HHHhhC--cCCcEecccccCchhHHHHHhhhhhcCc----
Confidence 4678999999999999999999999999977777764 377774 6789999999999965444 43344321
Q ss_pred ccCCCCCce-EEEecCCCCHHHHhcCceEEEeec---------CHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHH
Q 024066 81 KKDSWENPV-MLDAPVSGGVLAAEAGTLTFMVGG---------SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNL 150 (273)
Q Consensus 81 ~~g~~~g~~-~ldapv~G~~~~a~~g~l~~~vgG---------~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~ 150 (273)
+.. -|+. +=-+.|-|.|.. . ..+++| .++..+++.++.+..|+..+.+ ++.--+++-=...+
T Consensus 136 R~d--VGvssmHPAgvPGtp~h----~-~yviagr~t~g~elATeEQi~r~velaes~Gk~~yv~-padv~s~VaDmg~l 207 (340)
T COG4007 136 RED--VGVSSMHPAGVPGTPQH----G-HYVIAGRSTEGKELATEEQIERCVELAESTGKEVYVL-PADVVSAVADMGVL 207 (340)
T ss_pred hhh--cCccccCCCCCCCCCCC----c-eEEEeccCCCceeeccHHHHHHHHHHHHhcCCceEec-CHHHHHHhhhhHHH
Confidence 110 0122 112335555542 2 344443 2566788999999999976544 43222223223445
Q ss_pred HHHHHHHHHHHHHHHHHH-cCCCH
Q 024066 151 TMAVSMLGVSEALTLGQS-LGISA 173 (273)
Q Consensus 151 ~~~~~~~~~~Ea~~la~~-~Gl~~ 173 (273)
+....++++.+-+..+.+ .|-+.
T Consensus 208 vtav~l~gvldyy~Vg~qIi~AP~ 231 (340)
T COG4007 208 VTAVALSGVLDYYYVGTQIIGAPK 231 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcH
Confidence 566667777777777763 45444
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.01 Score=52.70 Aligned_cols=42 Identities=10% Similarity=0.111 Sum_probs=34.7
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCC
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 62 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~ 62 (273)
..+++|++++||+||+|++++..+.+++. .+|.++||+|+..
T Consensus 193 t~~l~e~~~~ADIVIsavg~~~~v~~~~i-----------k~GaiVIDvgin~ 234 (301)
T PRK14194 193 STDAKALCRQADIVVAAVGRPRLIDADWL-----------KPGAVVIDVGINR 234 (301)
T ss_pred CCCHHHHHhcCCEEEEecCChhcccHhhc-----------cCCcEEEEecccc
Confidence 35799999999999999999988887762 3568999998654
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.013 Score=53.16 Aligned_cols=62 Identities=15% Similarity=0.142 Sum_probs=53.6
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
..++.|++++||+|++|+|..++.+.++.. ..++.+ ++|.++||+|+...-....+.+.+.+
T Consensus 195 ~~~l~ell~~aDiV~l~lP~t~~T~~~i~~--~~~~~m--k~ga~lIN~aRg~~vd~~aL~~aL~~ 256 (333)
T PRK13243 195 YRPLEELLRESDFVSLHVPLTKETYHMINE--ERLKLM--KPTAILVNTARGKVVDTKALVKALKE 256 (333)
T ss_pred ecCHHHHHhhCCEEEEeCCCChHHhhccCH--HHHhcC--CCCeEEEECcCchhcCHHHHHHHHHc
Confidence 358999999999999999999999988743 466665 56789999999999999999999976
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.028 Score=54.11 Aligned_cols=68 Identities=10% Similarity=0.108 Sum_probs=57.0
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 76 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~ 76 (273)
.|++..+++.|++++||+|++|+|..++.+.++. ...++.+ ++|.++||++....-....+.+.+.+.
T Consensus 179 ~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~--~~~l~~m--k~ga~lIN~aRG~~vde~aL~~aL~~g 246 (525)
T TIGR01327 179 LGVELVDDLDELLARADFITVHTPLTPETRGLIG--AEELAKM--KKGVIIVNCARGGIIDEAALYEALEEG 246 (525)
T ss_pred cCCEEcCCHHHHHhhCCEEEEccCCChhhccCcC--HHHHhcC--CCCeEEEEcCCCceeCHHHHHHHHHcC
Confidence 4666667899999999999999999999988874 2466665 567899999999999999999999763
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase | Back alignment and domain information |
|---|
Probab=94.37 E-value=1.7 Score=38.18 Aligned_cols=114 Identities=19% Similarity=0.198 Sum_probs=76.3
Q ss_pred cCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccC
Q 024066 4 DMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKD 83 (273)
Q Consensus 4 ~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g 83 (273)
++|.++.++-.|+++++|++|+.+|-....-.++. .+++++ +.|.+|-+.-|++|-.--++-+.+..+ .
T Consensus 124 daGvkVtsDD~EAv~~aei~I~ftPfG~~q~~Iik---kii~~l--pEgAII~~tCTIpt~~ly~ilE~l~R~------D 192 (340)
T TIGR01723 124 DLGLKVTTDDREAVEDADIIITWLPKGNKQPDIIK---KFIDDI--PEGAIVTHACTIPTTKFAKIFEDLGRE------D 192 (340)
T ss_pred HcCceEecCcHHHhcCCCEEEEEcCCCCCchHHHH---HHHhhC--CCCCEEeccccCChHHHHHHHHhhCcc------c
Confidence 57999999999999999999999998764444443 245553 678899999999998766666654311 1
Q ss_pred CCCCc-eEEEecCCCCHHHHhcCceEEEee-cCHHHHHHHHHHHHHhcCCeEEe
Q 024066 84 SWENP-VMLDAPVSGGVLAAEAGTLTFMVG-GSEDAYQAAKPLFLSMGKNTIYC 135 (273)
Q Consensus 84 ~~~g~-~~ldapv~G~~~~a~~g~l~~~vg-G~~~~~~~~~~~l~~~~~~i~~~ 135 (273)
-|+ .|=-+.|-|.+ ++..+.-| .+++..+++-.+.+..++..|.+
T Consensus 193 --vgVsS~HPaaVPgt~-----~q~Yi~egyAtEEqI~klveL~~sa~k~ay~~ 239 (340)
T TIGR01723 193 --LNVTSYHPGCVPEMK-----GQVYIAEGYASEEAVNKLYELGKKARGKAFKM 239 (340)
T ss_pred --CCeeccCCCCCCCCC-----CceEeecccCCHHHHHHHHHHHHHhCCCeeec
Confidence 011 12223344443 34333322 26778888899999998876654
|
This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201. |
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.69 Score=41.59 Aligned_cols=108 Identities=18% Similarity=0.148 Sum_probs=60.3
Q ss_pred cCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccC
Q 024066 4 DMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKD 83 (273)
Q Consensus 4 ~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g 83 (273)
+.|++. .++.|++++||+|++++|+..+...+.. .+.+.+ .++.+|.-..-.+...-+ ..+..
T Consensus 45 ~~Gv~~-~s~~ea~~~ADiVvLaVpp~~~~~~v~~---ei~~~l--~~g~iVs~aaG~~i~~~~---~~~~~-------- 107 (314)
T TIGR00465 45 EDGFKV-GTVEEAIPQADLIMNLLPDEVQHEVYEA---EIQPLL--KEGKTLGFSHGFNIHFVQ---IVPPK-------- 107 (314)
T ss_pred HCCCEE-CCHHHHHhcCCEEEEeCCcHhHHHHHHH---HHHhhC--CCCcEEEEeCCccHhhcc---ccCCC--------
Confidence 446664 4688999999999999998756555443 244432 344554444444444332 22211
Q ss_pred CCCCc-eEEEecCCCCHH-----HHhcCceEEE-eec--CHHHHHHHHHHHHHhcCC
Q 024066 84 SWENP-VMLDAPVSGGVL-----AAEAGTLTFM-VGG--SEDAYQAAKPLFLSMGKN 131 (273)
Q Consensus 84 ~~~g~-~~ldapv~G~~~-----~a~~g~l~~~-vgG--~~~~~~~~~~~l~~~~~~ 131 (273)
+. .+.-+|=.-+.. ....|...++ ++- +.+..+.+..+++.+|..
T Consensus 108 ---~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~~~~~~iG~~ 161 (314)
T TIGR00465 108 ---DVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAIALAYAKAIGGG 161 (314)
T ss_pred ---CCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHHHHHHHHHcCCC
Confidence 12 223344322211 0145554444 333 345778899999999985
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.048 Score=52.58 Aligned_cols=66 Identities=12% Similarity=0.084 Sum_probs=55.5
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
.|++.+ ++.|++++||+|++|+|..++.+.++. .+.++.+ ++|.++||+|....-....+.+.+.+
T Consensus 181 ~g~~~~-~l~ell~~aDiV~l~lP~t~~t~~li~--~~~l~~m--k~ga~lIN~aRG~~vde~aL~~aL~~ 246 (526)
T PRK13581 181 LGVELV-SLDELLARADFITLHTPLTPETRGLIG--AEELAKM--KPGVRIINCARGGIIDEAALAEALKS 246 (526)
T ss_pred cCCEEE-cHHHHHhhCCEEEEccCCChHhhcCcC--HHHHhcC--CCCeEEEECCCCceeCHHHHHHHHhc
Confidence 455555 899999999999999999999998874 2466665 56789999999999999999999876
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.06 E-value=2 Score=38.46 Aligned_cols=212 Identities=12% Similarity=0.129 Sum_probs=114.5
Q ss_pred HHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEE
Q 024066 13 PFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 92 (273)
Q Consensus 13 ~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~~ld 92 (273)
..+....+|+||+++... ++++++.. +.+.. .+ .++|-+--..-+.-+++.+.+... . ...|+.+.-
T Consensus 61 ~~~~~~~~Dlviv~vKa~-q~~~al~~---l~~~~--~~-~t~vl~lqNG~g~~e~l~~~~~~~----~--il~G~~~~~ 127 (307)
T COG1893 61 DAEALGPADLVIVTVKAY-QLEEALPS---LAPLL--GP-NTVVLFLQNGLGHEEELRKILPKE----T--VLGGVTTHG 127 (307)
T ss_pred ChhhcCCCCEEEEEeccc-cHHHHHHH---hhhcC--CC-CcEEEEEeCCCcHHHHHHHhCCcc----e--EEEEEeeee
Confidence 345556899999999987 55666643 33321 22 233333333333333566555331 0 000111111
Q ss_pred ecCC--CCHHHHhcCc--eEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHH---------------
Q 024066 93 APVS--GGVLAAEAGT--LTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA--------------- 153 (273)
Q Consensus 93 apv~--G~~~~a~~g~--l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~--------------- 153 (273)
+--. |.......|. +..+.|+.++.++.+..+|+.-+-++.+..++-...-.|++.|..+.
T Consensus 128 a~~~~~g~v~~~g~g~~~ig~~~~~~~~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~ 207 (307)
T COG1893 128 AVREGPGHVVHTGLGDTVIGELRGGRDELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLE 207 (307)
T ss_pred eEecCCceEEEecCCcEEEccCCCCchHHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhc
Confidence 1111 1111111122 23444555667788888887777777766668889999999887655
Q ss_pred ------HHHHHHHHHHHHHHHcC--CCHH---HHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHH
Q 024066 154 ------VSMLGVSEALTLGQSLG--ISAS---TLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDL 222 (273)
Q Consensus 154 ------~~~~~~~Ea~~la~~~G--l~~~---~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~ 222 (273)
.....+.|....+++.| ++.+ .+..+.....+ .. ++.|.. |+..+ .-.-.--=.
T Consensus 208 ~~~~~~l~~~~~~E~~~v~~~~g~~~~~~~~~~v~~~~~~~~~-----~~---~sSM~q------Dl~~g-r~tEid~i~ 272 (307)
T COG1893 208 NPEARALIRALVAEVVAVARAEGVELPEEVVERVLAVIRATDA-----EN---YSSMLQ------DLEKG-RPTEIDAIN 272 (307)
T ss_pred ChhHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhccc-----cc---CchHHH------HHHcC-CcccHHHHh
Confidence 23456789999999999 4553 23333333210 00 111111 11100 000001113
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHHC
Q 024066 223 NLALASAKEVGVDCPLTSQAQDIYAKLCEN 252 (273)
Q Consensus 223 ~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~ 252 (273)
..+++.++..|+++|..+...++.+.....
T Consensus 273 G~vv~~a~~~gi~~P~~~~L~~lvk~~e~~ 302 (307)
T COG1893 273 GAVVRLAKKHGLATPVNDTLYALLKAKEAE 302 (307)
T ss_pred hHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 457899999999999999999988876653
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.079 Score=47.15 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=33.2
Q ss_pred CHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCC
Q 024066 12 TPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 62 (273)
Q Consensus 12 s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~ 62 (273)
+++|++++||+||+|++++..+++++ + .+|.+|||+++..
T Consensus 194 ~l~e~~~~ADIVIsavg~~~~v~~~~------l-----k~GavVIDvGin~ 233 (296)
T PRK14188 194 DLPAVCRRADILVAAVGRPEMVKGDW------I-----KPGATVIDVGINR 233 (296)
T ss_pred CHHHHHhcCCEEEEecCChhhcchhe------e-----cCCCEEEEcCCcc
Confidence 68999999999999999998877765 1 3568999988654
|
|
| >PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.97 E-value=2.2 Score=37.45 Aligned_cols=114 Identities=18% Similarity=0.182 Sum_probs=77.5
Q ss_pred cCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccC
Q 024066 4 DMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKD 83 (273)
Q Consensus 4 ~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g 83 (273)
++|.++.++-.|+++++|++|+.+|-....-.++. .+++++ +.|.+|-+.-|++|-.--++-+.+..+ .
T Consensus 126 daGvkVtsDD~EAvk~aei~I~ftPfG~~t~~Iik---ki~~~i--pEgAII~~tCTIpt~~ly~~le~l~R~------D 194 (342)
T PRK00961 126 DLGLKVTTDDREAVADADIVITWLPKGGMQPDIIE---KFADDI--KEGAIVTHACTIPTTKFAKIFKDLGRD------D 194 (342)
T ss_pred HcCceEecCcHHHhcCCCEEEEecCCCCCchHHHH---HHHhhC--CCCCEEeccccCCHHHHHHHHHHhCcc------c
Confidence 57999999999999999999999998774444543 255553 678899999999998777666654321 1
Q ss_pred CCCCc-eEEEecCCCCHHHHhcCceEEEee-cCHHHHHHHHHHHHHhcCCeEEe
Q 024066 84 SWENP-VMLDAPVSGGVLAAEAGTLTFMVG-GSEDAYQAAKPLFLSMGKNTIYC 135 (273)
Q Consensus 84 ~~~g~-~~ldapv~G~~~~a~~g~l~~~vg-G~~~~~~~~~~~l~~~~~~i~~~ 135 (273)
-|+ .|=-+.|-|.+ |+..+--| .+++..+++-.+.+..++..|.+
T Consensus 195 --vgIsS~HPaaVPgt~-----Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~ 241 (342)
T PRK00961 195 --LNVTSYHPGAVPEMK-----GQVYIAEGYADEEAVEKLYEIGKKARGNAFKM 241 (342)
T ss_pred --CCeeccCCCCCCCCC-----CceecccccCCHHHHHHHHHHHHHhCCCeeec
Confidence 012 22224455555 44222111 25678888889999999876654
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.05 Score=42.19 Aligned_cols=58 Identities=19% Similarity=0.175 Sum_probs=30.6
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHH
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSR 67 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~ 67 (273)
+.....++.|+++++|++|++|||+ ++.+|..+ +.......++++|+=||-..+....
T Consensus 55 ~~~~~~~~~~~~~~aDlv~iavpDd-aI~~va~~---La~~~~~~~g~iVvHtSGa~~~~vL 112 (127)
T PF10727_consen 55 GAGAILDLEEILRDADLVFIAVPDD-AIAEVAEQ---LAQYGAWRPGQIVVHTSGALGSDVL 112 (127)
T ss_dssp TT-----TTGGGCC-SEEEE-S-CC-HHHHHHHH---HHCC--S-TT-EEEES-SS--GGGG
T ss_pred ccccccccccccccCCEEEEEechH-HHHHHHHH---HHHhccCCCCcEEEECCCCChHHhh
Confidence 4455667888999999999999998 66777653 3332112356899988877666443
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.069 Score=40.75 Aligned_cols=40 Identities=23% Similarity=0.058 Sum_probs=28.0
Q ss_pred hcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCH
Q 024066 18 EASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDP 63 (273)
Q Consensus 18 ~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P 63 (273)
.++|+||+|+|++...+.+. .+... ...|++|||+|+.-.
T Consensus 64 ~~~DvV~~~~~~~~~~~~~~----~~~~~--~~~g~~viD~s~~~~ 103 (122)
T smart00859 64 LAVDIVFLALPHGVSKEIAP----LLPKA--AEAGVKVIDLSSAFR 103 (122)
T ss_pred cCCCEEEEcCCcHHHHHHHH----HHHhh--hcCCCEEEECCcccc
Confidence 48999999999987766432 12222 135689999998743
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.028 Score=40.79 Aligned_cols=49 Identities=22% Similarity=0.344 Sum_probs=33.2
Q ss_pred CCCCCCC-CHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCC
Q 024066 5 MGVPTKE-TPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST 60 (273)
Q Consensus 5 ~Ga~~~~-s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST 60 (273)
.|+.... +..|+++++|+||+||+.. ++.+++.. + .. ..+++++|+.+.
T Consensus 46 ~~~~~~~~~~~~~~~~advvilav~p~-~~~~v~~~---i-~~--~~~~~~vis~~a 95 (96)
T PF03807_consen 46 YGVQATADDNEEAAQEADVVILAVKPQ-QLPEVLSE---I-PH--LLKGKLVISIAA 95 (96)
T ss_dssp CTTEEESEEHHHHHHHTSEEEE-S-GG-GHHHHHHH---H-HH--HHTTSEEEEEST
T ss_pred hccccccCChHHhhccCCEEEEEECHH-HHHHHHHH---H-hh--ccCCCEEEEeCC
Confidence 3555555 8999999999999999975 66777753 3 22 135689998753
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.13 Score=46.29 Aligned_cols=61 Identities=18% Similarity=0.225 Sum_probs=51.5
Q ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 11 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 11 ~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
+++.+++++||+|++|+|..++.+.++.. +.++.+ ++|.++||++=...=.-..|.+.+.+
T Consensus 182 ~~l~e~l~~aDvvv~~lPlt~~T~~li~~--~~l~~m--k~ga~lIN~aRG~vVde~aL~~aL~~ 242 (312)
T PRK15469 182 EELSAFLSQTRVLINLLPNTPETVGIINQ--QLLEQL--PDGAYLLNLARGVHVVEDDLLAALDS 242 (312)
T ss_pred ccHHHHHhcCCEEEECCCCCHHHHHHhHH--HHHhcC--CCCcEEEECCCccccCHHHHHHHHhc
Confidence 57889999999999999999999988853 466665 46789999999888888888888876
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.15 Score=46.12 Aligned_cols=64 Identities=13% Similarity=0.288 Sum_probs=52.7
Q ss_pred CCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 8 PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 8 ~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
+..+++.+++++||+|++|+|..++.+.++. ..+++.+ ++|.++||++-..--....+.+.+.+
T Consensus 187 ~~~~~l~ell~~aDiVil~lP~t~~t~~li~--~~~l~~m--k~gavlIN~aRG~~vd~~aL~~aL~~ 250 (330)
T PRK12480 187 TYKDSVKEAIKDADIISLHVPANKESYHLFD--KAMFDHV--KKGAILVNAARGAVINTPDLIAAVND 250 (330)
T ss_pred hccCCHHHHHhcCCEEEEeCCCcHHHHHHHh--HHHHhcC--CCCcEEEEcCCccccCHHHHHHHHHc
Confidence 3456899999999999999999998888774 3566665 46789999999888888888888875
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.11 Score=45.78 Aligned_cols=42 Identities=17% Similarity=0.228 Sum_probs=34.3
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCC
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 62 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~ 62 (273)
+.++++.+++||+||++++.+..++..+. .+|.++||+|+..
T Consensus 192 t~~l~~~~~~ADIVI~avg~~~~v~~~~i-----------k~GavVIDvgin~ 233 (284)
T PRK14179 192 TRNLAEVARKADILVVAIGRGHFVTKEFV-----------KEGAVVIDVGMNR 233 (284)
T ss_pred CCCHHHHHhhCCEEEEecCccccCCHHHc-----------cCCcEEEEeccee
Confidence 45688999999999999999998887652 3568999988654
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=92.59 E-value=1.2 Score=44.56 Aligned_cols=140 Identities=19% Similarity=0.117 Sum_probs=82.8
Q ss_pred CCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEE--EcCCCCHHHHHHHHHHHhhchhhhccCCC
Q 024066 8 PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLI--DSSTIDPQTSRNISAAVSNCILKEKKDSW 85 (273)
Q Consensus 8 ~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iii--d~ST~~P~~~~~l~~~~~~~g~~~~~g~~ 85 (273)
+..++. +++++||+||=++|.+-+++.-++.. +-+. .+++ +|+ |+||.++. ++++.+.. .
T Consensus 374 ~~~~~~-~~~~~adlViEav~E~l~~K~~v~~~--l~~~--~~~~-~ilasnTS~l~i~---~la~~~~~------p--- 435 (699)
T TIGR02440 374 TGTTDY-RGFKDVDIVIEAVFEDLALKHQMVKD--IEQE--CAAH-TIFASNTSSLPIG---QIAAAASR------P--- 435 (699)
T ss_pred EEeCCh-HHhccCCEEEEeccccHHHHHHHHHH--HHhh--CCCC-cEEEeCCCCCCHH---HHHHhcCC------c---
Confidence 345565 56789999999999999887654431 2222 1233 444 44455554 44444421 1
Q ss_pred CCceEEEecCCCCHHHHhcCceEEEeec---CHHHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHH
Q 024066 86 ENPVMLDAPVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSE 161 (273)
Q Consensus 86 ~g~~~ldapv~G~~~~a~~g~l~~~vgG---~~~~~~~~~~~l~~~~~~i~~~G~-~g~a~~~Kl~~n~~~~~~~~~~~E 161 (273)
-+++-.=-+-.|.. -.++=++.| ++++++.+..+++.+++..+.+.+ +| .+.|=+. ...+.|
T Consensus 436 --~r~~g~HffnP~~~---~~lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv~v~d~pG------fi~nRl~---~~~~~E 501 (699)
T TIGR02440 436 --ENVIGLHYFSPVEK---MPLVEVIPHAGTSEQTIATTVALAKKQGKTPIVVADKAG------FYVNRIL---APYMNE 501 (699)
T ss_pred --ccEEEEecCCcccc---CceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEccccc------hHHHHHH---HHHHHH
Confidence 12322222222211 133434443 468999999999999999888876 55 3444433 356788
Q ss_pred HHHHHHHcCCCHHHHHHHH
Q 024066 162 ALTLGQSLGISASTLTKIL 180 (273)
Q Consensus 162 a~~la~~~Gl~~~~~~~~l 180 (273)
++.+.+ .|++++++=.++
T Consensus 502 a~~l~~-~G~~~~dID~a~ 519 (699)
T TIGR02440 502 AARLLL-EGEPVEHIDKAL 519 (699)
T ss_pred HHHHHH-CCCCHHHHHHHH
Confidence 888877 567887654444
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.14 Score=46.06 Aligned_cols=46 Identities=22% Similarity=0.303 Sum_probs=33.9
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEE
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLI 56 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iii 56 (273)
.|+++ .|++|++++||+|++++|++++ +.++. .++++.+ ++|.+++
T Consensus 58 ~G~~v-~sl~Eaak~ADVV~llLPd~~t-~~V~~--~eil~~M--K~GaiL~ 103 (335)
T PRK13403 58 DGFEV-MSVSEAVRTAQVVQMLLPDEQQ-AHVYK--AEVEENL--REGQMLL 103 (335)
T ss_pred cCCEE-CCHHHHHhcCCEEEEeCCChHH-HHHHH--HHHHhcC--CCCCEEE
Confidence 46654 4899999999999999999655 77875 2477765 3455554
|
|
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=92.15 E-value=1.4 Score=44.12 Aligned_cols=140 Identities=17% Similarity=0.114 Sum_probs=82.4
Q ss_pred CCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEE--EcCCCCHHHHHHHHHHHhhchhhhccCCCC
Q 024066 9 TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLI--DSSTIDPQTSRNISAAVSNCILKEKKDSWE 86 (273)
Q Consensus 9 ~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iii--d~ST~~P~~~~~l~~~~~~~g~~~~~g~~~ 86 (273)
.+++. +++++||+||=+++.+-.++.-++.. +-+.. +++ .|+ |+|+.++. +|++.+.. .
T Consensus 380 ~~~~~-~~~~~aDlViEav~E~~~~K~~v~~~--le~~~--~~~-~ilasnTS~l~i~---~la~~~~~------p---- 440 (708)
T PRK11154 380 GTTDY-RGFKHADVVIEAVFEDLALKQQMVAE--VEQNC--APH-TIFASNTSSLPIG---QIAAAAAR------P---- 440 (708)
T ss_pred EeCCh-HHhccCCEEeecccccHHHHHHHHHH--HHhhC--CCC-cEEEECCCCCCHH---HHHHhcCc------c----
Confidence 34555 56789999999999999887655432 32221 233 444 44444444 44444421 1
Q ss_pred CceEEEecCCCCHHHHhcCceEEEeec---CHHHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHH
Q 024066 87 NPVMLDAPVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEA 162 (273)
Q Consensus 87 g~~~ldapv~G~~~~a~~g~l~~~vgG---~~~~~~~~~~~l~~~~~~i~~~G~-~g~a~~~Kl~~n~~~~~~~~~~~Ea 162 (273)
-+|+-.=.+..+... .++=++-| ++++++.+..+++.+++..+.+.+ +| .+.|=+. ...+.|+
T Consensus 441 -~r~ig~Hff~P~~~~---~lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~pG------fi~nRl~---~~~~~EA 507 (708)
T PRK11154 441 -EQVIGLHYFSPVEKM---PLVEVIPHAKTSAETIATTVALAKKQGKTPIVVRDGAG------FYVNRIL---APYINEA 507 (708)
T ss_pred -cceEEEecCCccccC---ceEEEECCCCCCHHHHHHHHHHHHHcCCceEEEeccCc------HHHHHHH---HHHHHHH
Confidence 123332222222111 23333333 568999999999999998888876 55 2334333 4567888
Q ss_pred HHHHHHcCCCHHHHHHHHh
Q 024066 163 LTLGQSLGISASTLTKILN 181 (273)
Q Consensus 163 ~~la~~~Gl~~~~~~~~l~ 181 (273)
+.+.++ |++++++=.++.
T Consensus 508 ~~lv~e-Gv~~~dID~a~~ 525 (708)
T PRK11154 508 ARLLLE-GEPIEHIDAALV 525 (708)
T ss_pred HHHHHc-CCCHHHHHHHHH
Confidence 888886 788876544443
|
|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.72 E-value=0.27 Score=45.93 Aligned_cols=66 Identities=17% Similarity=0.111 Sum_probs=54.9
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
++..+.++.|++++||+|.+++|-.++.+.++.. ..++.+ ++|.++||++....-....+.+.+.+
T Consensus 190 ~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~--~~l~~m--k~ga~lIN~aRG~~vde~aL~~aL~~ 255 (409)
T PRK11790 190 NARQVGSLEELLAQSDVVSLHVPETPSTKNMIGA--EELALM--KPGAILINASRGTVVDIDALADALKS 255 (409)
T ss_pred CceecCCHHHHHhhCCEEEEcCCCChHHhhccCH--HHHhcC--CCCeEEEECCCCcccCHHHHHHHHHc
Confidence 3455679999999999999999999988887743 355554 56789999999999999999999876
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=91.70 E-value=2.3 Score=42.63 Aligned_cols=143 Identities=15% Similarity=0.105 Sum_probs=84.7
Q ss_pred CCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEE--EcCCCCHHHHHHHHHHHhhchhhhccCCC
Q 024066 8 PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLI--DSSTIDPQTSRNISAAVSNCILKEKKDSW 85 (273)
Q Consensus 8 ~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iii--d~ST~~P~~~~~l~~~~~~~g~~~~~g~~ 85 (273)
+..++. +.+++||+||=+++.+-+++.-++.. +-+.. +++ +|+ |+||.++. ++++.+.. .
T Consensus 382 ~~~~~~-~~~~~aDlViEav~E~l~~K~~vf~~--l~~~~--~~~-~ilasNTSsl~i~---~la~~~~~------p--- 443 (715)
T PRK11730 382 RPTLDY-AGFERVDVVVEAVVENPKVKAAVLAE--VEQKV--RED-TILASNTSTISIS---LLAKALKR------P--- 443 (715)
T ss_pred EEeCCH-HHhcCCCEEEecccCcHHHHHHHHHH--HHhhC--CCC-cEEEEcCCCCCHH---HHHhhcCC------C---
Confidence 334555 55789999999999999987655432 22221 233 444 44444444 45554431 1
Q ss_pred CCceEEEecCCCCHHHHhcCceEEEeec---CHHHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHH
Q 024066 86 ENPVMLDAPVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSE 161 (273)
Q Consensus 86 ~g~~~ldapv~G~~~~a~~g~l~~~vgG---~~~~~~~~~~~l~~~~~~i~~~G~-~g~a~~~Kl~~n~~~~~~~~~~~E 161 (273)
-+++-.=.+-.++.. .++=++-| ++++++.+..+++.+++..+.+.+ +| .+.|=+.. ..+.|
T Consensus 444 --~r~~g~Hff~P~~~~---~lVEvv~g~~T~~~~~~~~~~~~~~lgk~pv~v~d~pG------fv~nRi~~---~~~~e 509 (715)
T PRK11730 444 --ENFCGMHFFNPVHRM---PLVEVIRGEKTSDETIATVVAYASKMGKTPIVVNDCPG------FFVNRVLF---PYFAG 509 (715)
T ss_pred --ccEEEEecCCccccc---ceEEeeCCCCCCHHHHHHHHHHHHHhCCceEEecCcCc------hhHHHHHH---HHHHH
Confidence 123332222222211 23323333 578999999999999999888877 66 34455433 35678
Q ss_pred HHHHHHHcCCCHHHHHHHHhhc
Q 024066 162 ALTLGQSLGISASTLTKILNSS 183 (273)
Q Consensus 162 a~~la~~~Gl~~~~~~~~l~~~ 183 (273)
++.+.++. .+++++=.++..+
T Consensus 510 a~~lv~~G-a~~e~ID~a~~~~ 530 (715)
T PRK11730 510 FSQLLRDG-ADFRQIDKVMEKQ 530 (715)
T ss_pred HHHHHHcC-CCHHHHHHHHHhh
Confidence 88888754 8888765555543
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=91.20 E-value=0.091 Score=47.21 Aligned_cols=58 Identities=10% Similarity=-0.008 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
+..++++.+++++||+|++|.+.+ +.++.. ..+ .+| .+||+++.++...+++...+.+
T Consensus 177 ~~~~~~~~~av~~aDIVi~aT~s~---~pvl~~--~~l-----~~g-~~i~~ig~~~~~~~El~~~~~~ 234 (314)
T PRK06141 177 AEVVTDLEAAVRQADIISCATLST---EPLVRG--EWL-----KPG-THLDLVGNFTPDMRECDDEAIR 234 (314)
T ss_pred eEEeCCHHHHHhcCCEEEEeeCCC---CCEecH--HHc-----CCC-CEEEeeCCCCcccccCCHHHHh
Confidence 566789999999999998777765 334332 111 344 4899999999999999988765
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.74 E-value=4.2 Score=36.23 Aligned_cols=134 Identities=13% Similarity=0.040 Sum_probs=72.1
Q ss_pred EEeecC-HHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHc
Q 024066 109 FMVGGS-EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA------------------VSMLGVSEALTLGQSL 169 (273)
Q Consensus 109 ~~vgG~-~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~------------------~~~~~~~Ea~~la~~~ 169 (273)
+.+|.. .+..+++..+|..-+-...+..++-...-.||+.|..+. .....+.|...++++.
T Consensus 147 ~~~G~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~ 226 (305)
T PRK05708 147 TWLGDPRNPTAPAWLDDLREAGIPHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRC 226 (305)
T ss_pred EEEcCCCCcchHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHc
Confidence 445532 233455666666555444544457777888888776321 2356688999999999
Q ss_pred CCCH--HHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 024066 170 GISA--STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYA 247 (273)
Q Consensus 170 Gl~~--~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~~~~~~~~~~ 247 (273)
|++. +.+.+.+..-.... ... .+.|+.. +..+.- .-++.. ...+++.+++.|+|+|..+...++..
T Consensus 227 G~~~~~~~~~~~~~~~~~~~--~~~---~sSM~qD-~~~gR~---tEid~i---~G~vvr~a~~~Gv~~P~~~~l~~~v~ 294 (305)
T PRK05708 227 GQPAAAANLHEEVQRVIQAT--AAN---YSSMYQD-VRAGRR---TEISYL---LGYACRAADRHGLPLPRLQHLQQRLV 294 (305)
T ss_pred CCCccHHHHHHHHHHHHHhc--cCC---CcHHHHH-HHcCCc---eeehhh---hhHHHHHHHHcCCCCchHHHHHHHHH
Confidence 9763 22333322110000 000 0111110 001100 001111 45678999999999999999987665
Q ss_pred HHHH-CCC
Q 024066 248 KLCE-NGH 254 (273)
Q Consensus 248 ~a~~-~G~ 254 (273)
..+. .|.
T Consensus 295 ~~~~~~~~ 302 (305)
T PRK05708 295 AHLRARGL 302 (305)
T ss_pred HHHHhcCC
Confidence 5443 444
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=90.26 E-value=3.4 Score=41.53 Aligned_cols=144 Identities=15% Similarity=0.170 Sum_probs=87.0
Q ss_pred CCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEE--EcCCCCHHHHHHHHHHHhhchhhhccCCC
Q 024066 8 PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLI--DSSTIDPQTSRNISAAVSNCILKEKKDSW 85 (273)
Q Consensus 8 ~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iii--d~ST~~P~~~~~l~~~~~~~g~~~~~g~~ 85 (273)
+...+. +.+++||+||=+++.+-.++.-++.. +-+.. +++ .|+ |+||.++. ++++.+.. ...-
T Consensus 382 ~~~~~~-~~~~~aDlViEav~E~l~~K~~vf~~--l~~~~--~~~-~ilasnTS~l~i~---~ia~~~~~------p~r~ 446 (714)
T TIGR02437 382 TPTLSY-AGFDNVDIVVEAVVENPKVKAAVLAE--VEQHV--RED-AILASNTSTISIS---LLAKALKR------PENF 446 (714)
T ss_pred EEeCCH-HHhcCCCEEEEcCcccHHHHHHHHHH--HHhhC--CCC-cEEEECCCCCCHH---HHHhhcCC------cccE
Confidence 334555 45789999999999999987655432 32221 233 444 44444444 44444421 1100
Q ss_pred CCceEEEecCCCCHHHHhcCceEEEeec---CHHHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHH
Q 024066 86 ENPVMLDAPVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSE 161 (273)
Q Consensus 86 ~g~~~ldapv~G~~~~a~~g~l~~~vgG---~~~~~~~~~~~l~~~~~~i~~~G~-~g~a~~~Kl~~n~~~~~~~~~~~E 161 (273)
-|.||.. |+.-- .|+=++.| ++++++++..+++.+++..+.+.+ +| .+.|=+.. ..+.|
T Consensus 447 ig~Hff~-P~~~~-------~lvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pG------fi~NRl~~---~~~~e 509 (714)
T TIGR02437 447 CGMHFFN-PVHRM-------PLVEVIRGEKSSDETIATVVAYASKMGKTPIVVNDCPG------FFVNRVLF---PYFGG 509 (714)
T ss_pred EEEecCC-CcccC-------ceEeecCCCCCCHHHHHHHHHHHHHcCCEEEEeCCccc------chHHHHHH---HHHHH
Confidence 1234432 22111 33334444 468999999999999999888887 66 45566544 45789
Q ss_pred HHHHHHHcCCCHHHHHHHHhhcC
Q 024066 162 ALTLGQSLGISASTLTKILNSSS 184 (273)
Q Consensus 162 a~~la~~~Gl~~~~~~~~l~~~~ 184 (273)
++.+.+. |.+++++=.++..+.
T Consensus 510 a~~l~~e-G~~~~~ID~a~~~~~ 531 (714)
T TIGR02437 510 FSKLLRD-GADFVRIDKVMEKQF 531 (714)
T ss_pred HHHHHHC-CCCHHHHHHHHHhcC
Confidence 9988875 589988755665543
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=90.08 E-value=0.46 Score=43.35 Aligned_cols=62 Identities=18% Similarity=0.218 Sum_probs=50.5
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
..+..|++++||+|++++|..+..+.++.. ..++.+ ++|.++||++-..-=.-..|.+.+.+
T Consensus 217 ~~~L~ell~~aDiVvl~lPlt~~T~~li~~--~~l~~M--k~ga~lINvaRG~lVde~AL~~AL~~ 278 (347)
T PLN02928 217 HEDIYEFAGEADIVVLCCTLTKETAGIVND--EFLSSM--KKGALLVNIARGGLLDYDAVLAALES 278 (347)
T ss_pred ccCHHHHHhhCCEEEECCCCChHhhcccCH--HHHhcC--CCCeEEEECCCccccCHHHHHHHHHc
Confidence 468899999999999999999888877743 456655 56789999998877777788888865
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.91 E-value=0.78 Score=40.31 Aligned_cols=60 Identities=15% Similarity=0.104 Sum_probs=44.1
Q ss_pred CCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 024066 8 PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 76 (273)
Q Consensus 8 ~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~ 76 (273)
..++++.++..++|+|++|.|++.. .++.. .+++ .|+-++.+|+.++...+++.+.++++
T Consensus 56 ~~~~~~eell~~~D~Vvi~tp~~~h-~e~~~---~aL~-----aGk~Vi~~s~gal~~~~~L~~~A~~~ 115 (271)
T PRK13302 56 PPVVPLDQLATHADIVVEAAPASVL-RAIVE---PVLA-----AGKKAIVLSVGALLRNEDLIDLARQN 115 (271)
T ss_pred cccCCHHHHhcCCCEEEECCCcHHH-HHHHH---HHHH-----cCCcEEEecchhHHhHHHHHHHHHHc
Confidence 5678999999999999999998754 55543 2443 34555667888787888888887764
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=89.89 E-value=2.2 Score=43.02 Aligned_cols=140 Identities=18% Similarity=0.137 Sum_probs=84.8
Q ss_pred CCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEE--EcCCCCHHHHHHHHHHHhhchhhhccCCC
Q 024066 8 PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLI--DSSTIDPQTSRNISAAVSNCILKEKKDSW 85 (273)
Q Consensus 8 ~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iii--d~ST~~P~~~~~l~~~~~~~g~~~~~g~~ 85 (273)
+...+.. .+++||+||=+++.+-+++.-++.. +-+.. +++ .|+ |+||.++. ++++.+.. ....
T Consensus 404 ~~~~~~~-~~~~aDlViEAv~E~l~~K~~vf~~--l~~~~--~~~-~ilasNTSsl~i~---~la~~~~~------p~r~ 468 (737)
T TIGR02441 404 TPTLDYS-GFKNADMVIEAVFEDLSLKHKVIKE--VEAVV--PPH-CIIASNTSALPIK---DIAAVSSR------PEKV 468 (737)
T ss_pred EEeCCHH-HhccCCeehhhccccHHHHHHHHHH--HHhhC--CCC-cEEEEcCCCCCHH---HHHhhcCC------ccce
Confidence 3445664 5789999999999999987655432 22221 233 344 56666665 44444421 1100
Q ss_pred CCceEEEecCCCCHHHHhcCceEEEeec---CHHHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHH
Q 024066 86 ENPVMLDAPVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSE 161 (273)
Q Consensus 86 ~g~~~ldapv~G~~~~a~~g~l~~~vgG---~~~~~~~~~~~l~~~~~~i~~~G~-~g~a~~~Kl~~n~~~~~~~~~~~E 161 (273)
-|.||.. |+.-- .|+=++-| ++++++.+..+++.+++..+.+++ +| .+.|=+. ...+.|
T Consensus 469 ig~Hff~-P~~~m-------~LvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pG------Fi~NRi~---~~~~~e 531 (737)
T TIGR02441 469 IGMHYFS-PVDKM-------QLLEIITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPG------FYTTRCL---GPMLAE 531 (737)
T ss_pred EEEeccC-CcccC-------ceEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEECCcCC------chHHHHH---HHHHHH
Confidence 1234432 22111 33333333 568999999999999999888887 66 3445544 467788
Q ss_pred HHHHHHHcCCCHHHHHHHH
Q 024066 162 ALTLGQSLGISASTLTKIL 180 (273)
Q Consensus 162 a~~la~~~Gl~~~~~~~~l 180 (273)
++.+.+. |++++++=.++
T Consensus 532 a~~lv~e-Gv~~~~ID~a~ 549 (737)
T TIGR02441 532 VIRLLQE-GVDPKKLDKLT 549 (737)
T ss_pred HHHHHHc-CCCHHHHHHHH
Confidence 8888755 78887764443
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=89.72 E-value=0.49 Score=42.73 Aligned_cols=65 Identities=12% Similarity=0.131 Sum_probs=52.7
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
|++. .|..|++++||+|++++|-.++.+.++.. ..++.+ ++|.++||++=...=.-..+.+.+.+
T Consensus 188 ~~~~-~~l~ell~~sDvv~lh~plt~~T~~li~~--~~l~~m--k~ga~lIN~aRG~vVde~AL~~AL~~ 252 (323)
T PRK15409 188 NARY-CDLDTLLQESDFVCIILPLTDETHHLFGA--EQFAKM--KSSAIFINAGRGPVVDENALIAALQK 252 (323)
T ss_pred CcEe-cCHHHHHHhCCEEEEeCCCChHHhhccCH--HHHhcC--CCCeEEEECCCccccCHHHHHHHHHc
Confidence 4443 48999999999999999999998887743 356655 46789999999888888889888875
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.09 E-value=0.49 Score=43.71 Aligned_cols=63 Identities=14% Similarity=0.102 Sum_probs=49.4
Q ss_pred CCCCHHHHHhcCCEEEEeCCChH----HHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 9 TKETPFEVAEASDVVITMLPSSS----HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 9 ~~~s~~e~~~~advvi~~v~~~~----av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
...++.|++++||+|++++|-.. ..+.++.. ..++.+ ++|.++||+|....-....+.+.+.+
T Consensus 157 ~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~--~~l~~m--k~gailIN~aRG~vVde~AL~~aL~~ 223 (381)
T PRK00257 157 DFVSLERILEECDVISLHTPLTKEGEHPTRHLLDE--AFLASL--RPGAWLINASRGAVVDNQALREALLS 223 (381)
T ss_pred cccCHHHHHhhCCEEEEeCcCCCCccccccccCCH--HHHhcC--CCCeEEEECCCCcccCHHHHHHHHHh
Confidence 45689999999999999999765 34444422 355554 56789999999999999999998875
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=89.08 E-value=14 Score=33.17 Aligned_cols=143 Identities=11% Similarity=0.129 Sum_probs=89.1
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcC-CCCcccCCCCCCCeEEE--EcCCCCHHHHHHHHHHHhhchhhhccCCCC
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNG-PNGLLQGGNSVRPQLLI--DSSTIDPQTSRNISAAVSNCILKEKKDSWE 86 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~-~~g~l~~~~~~~g~iii--d~ST~~P~~~~~l~~~~~~~g~~~~~g~~~ 86 (273)
..++. ++++||+||-.++-.-.++.-++. .+.++ ++ ..|+ |+||.++. ++++.+.. .
T Consensus 74 ~~~~~-~l~~~DlVIEAv~E~levK~~vf~~l~~~~-----~~-~aIlASNTSsl~it---~ia~~~~r------p---- 133 (307)
T COG1250 74 TTDLA-ALKDADLVIEAVVEDLELKKQVFAELEALA-----KP-DAILASNTSSLSIT---ELAEALKR------P---- 133 (307)
T ss_pred cCchh-HhccCCEEEEeccccHHHHHHHHHHHHhhc-----CC-CcEEeeccCCCCHH---HHHHHhCC------c----
Confidence 33444 688999999999999988754443 22222 23 3555 45555555 44444421 1
Q ss_pred CceEEEecCCCCHHHHhcCceEEEeecC---HHHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHH
Q 024066 87 NPVMLDAPVSGGVLAAEAGTLTFMVGGS---EDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEA 162 (273)
Q Consensus 87 g~~~ldapv~G~~~~a~~g~l~~~vgG~---~~~~~~~~~~l~~~~~~i~~~G~-~g~a~~~Kl~~n~~~~~~~~~~~Ea 162 (273)
-+|+-.=-+..|+- -.|+=++.|. +++++++..+.+.+++..+.+.+ +| .+.|-+. ...+.|+
T Consensus 134 -er~iG~HFfNP~~~---m~LVEvI~g~~T~~e~~~~~~~~~~~igK~~vv~~D~pG------Fi~NRil---~~~~~eA 200 (307)
T COG1250 134 -ERFIGLHFFNPVPL---MPLVEVIRGEKTSDETVERVVEFAKKIGKTPVVVKDVPG------FIVNRLL---AALLNEA 200 (307)
T ss_pred -hhEEEEeccCCCCc---ceeEEEecCCCCCHHHHHHHHHHHHHcCCCCEeecCCCc------eehHhHH---HHHHHHH
Confidence 12332222222221 2445556664 68999999999999987655566 66 2445433 4678899
Q ss_pred HHHHHHcCCCHHHHHHHHhhcCC
Q 024066 163 LTLGQSLGISASTLTKILNSSSA 185 (273)
Q Consensus 163 ~~la~~~Gl~~~~~~~~l~~~~~ 185 (273)
+.+.++...+++++=.++..+.|
T Consensus 201 ~~l~~eGva~~e~ID~~~~~~~G 223 (307)
T COG1250 201 IRLLEEGVATPEEIDAAMRQGLG 223 (307)
T ss_pred HHHHHhCCCCHHHHHHHHHhccC
Confidence 99999988999988777766543
|
|
| >PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases | Back alignment and domain information |
|---|
Probab=88.86 E-value=7.5 Score=30.25 Aligned_cols=71 Identities=20% Similarity=0.249 Sum_probs=46.5
Q ss_pred EEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHH---HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH----HHHHH
Q 024066 108 TFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGA---AAKICNNLTMAVSMLGVSEALTLGQSLGISAST----LTKIL 180 (273)
Q Consensus 108 ~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~---~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl~~~~----~~~~l 180 (273)
++.+-|+++..+.++.+++.+|.+++.+.+-.... +.=+++|++ ...+..+..+.++.|++.+. +..++
T Consensus 3 ~~~iEgd~~~~~~l~~l~~~lg~~~~~i~~~~r~~yHaAav~asNf~----~~L~~~a~~ll~~~gi~~~~a~~~L~PLi 78 (132)
T PF10728_consen 3 PFAIEGDEEALEVLQELAKELGGRPFEIDSEQRALYHAAAVFASNFL----VALYALAAELLEQAGIDFEEALEALLPLI 78 (132)
T ss_dssp -EEEEESHHHHHHHHHHHHHTTSEEEE--GGGHHHHHHHHHHHHHHH----HHHHHHHHHHHHHTT-SHHH--HHHHHHH
T ss_pred EEEEecCHHHHHHHHHHHHHhCCceEEeCHHhHHHHHHHHHHHHhhH----HHHHHHHHHHHHHcCCCchhHHHHHHHHH
Confidence 45666799999999999999999988885433221 112234443 45566788999999999944 55555
Q ss_pred hh
Q 024066 181 NS 182 (273)
Q Consensus 181 ~~ 182 (273)
..
T Consensus 79 ~~ 80 (132)
T PF10728_consen 79 RE 80 (132)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
; PDB: 3D1L_A 2I76_A 3DFU_A. |
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.85 E-value=5.9 Score=33.09 Aligned_cols=89 Identities=10% Similarity=0.202 Sum_probs=52.9
Q ss_pred HhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEE-ecC
Q 024066 17 AEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APV 95 (273)
Q Consensus 17 ~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~~ld-apv 95 (273)
+.+||+||+|+|-. ...+++.. + . .+++|.+++--.-. +.. ..|+- =|+
T Consensus 29 ~~~~DlVilavPv~-~~~~~i~~---~-------~-~~v~Dv~SvK~~i~----~~~--------------~~~vg~HPM 78 (197)
T PRK06444 29 IKKADHAFLSVPID-AALNYIES---Y-------D-NNFVEISSVKWPFK----KYS--------------GKIVSIHPL 78 (197)
T ss_pred ECCCCEEEEeCCHH-HHHHHHHH---h-------C-CeEEeccccCHHHH----Hhc--------------CCEEecCCC
Confidence 57899999999976 44556532 1 1 37889998877432 210 23444 578
Q ss_pred CCCHHHHhcC--ceEEEee--cCHHHHHHHHHHHHHhcCCeEEeCCc
Q 024066 96 SGGVLAAEAG--TLTFMVG--GSEDAYQAAKPLFLSMGKNTIYCGGA 138 (273)
Q Consensus 96 ~G~~~~a~~g--~l~~~vg--G~~~~~~~~~~~l~~~~~~i~~~G~~ 138 (273)
.| |..+..+ ...+++. .+++.++.++.+++ |.+++.+.+-
T Consensus 79 fG-p~~a~~~lf~~~iv~~~~~~~~~~~~~~~l~~--G~~~~~~t~e 122 (197)
T PRK06444 79 FG-PMSYNDGVHRTVIFINDISRDNYLNEINEMFR--GYHFVEMTAD 122 (197)
T ss_pred CC-CCcCcccccceEEEECCCCCHHHHHHHHHHHc--CCEEEEeCHH
Confidence 87 3333322 2233342 23456777888887 6677776543
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=88.46 E-value=0.24 Score=40.56 Aligned_cols=62 Identities=15% Similarity=0.133 Sum_probs=46.4
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
..+..|++++||+|++++|-.++.+.++.. ..++.+ ++|.++||.+-...=.-..+.+.+.+
T Consensus 82 ~~~l~ell~~aDiv~~~~plt~~T~~li~~--~~l~~m--k~ga~lvN~aRG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 82 YVSLDELLAQADIVSLHLPLTPETRGLINA--EFLAKM--KPGAVLVNVARGELVDEDALLDALES 143 (178)
T ss_dssp ESSHHHHHHH-SEEEE-SSSSTTTTTSBSH--HHHHTS--TTTEEEEESSSGGGB-HHHHHHHHHT
T ss_pred eeehhhhcchhhhhhhhhccccccceeeee--eeeecc--ccceEEEeccchhhhhhhHHHHHHhh
Confidence 469999999999999999987777665532 345554 56789999998888777788888876
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=88.23 E-value=1.5 Score=38.88 Aligned_cols=113 Identities=17% Similarity=0.217 Sum_probs=71.2
Q ss_pred CcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhhcC-CcccccccCCCCCCcccCCCCCCC-
Q 024066 137 GAGNGAAAKICNNLTMAVSMLGVSEALTLGQS------LGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVPASRN- 208 (273)
Q Consensus 137 ~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~------~Gl~~~~~~~~l~~~~-~~s~~~~~~~~~~~~~~~~~~~~~- 208 (273)
.......++-+.+.+..+.+...++++.+-++ .+++..++..+.+.+. -+|++++.... .+.+...-.+
T Consensus 135 ~~~~~~~i~~l~~Aly~~~i~~yaQGf~ll~~as~~~~W~lnl~~ia~IWr~GCIIRs~lL~~i~~---af~~~p~l~nL 211 (291)
T PF00393_consen 135 KEDKEEFIEDLRKALYAAKIISYAQGFALLRAASKEYGWDLNLSEIARIWRGGCIIRSWLLDDIAE---AFKENPDLENL 211 (291)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----HHHHHHHTSSSSTT-BTHHHHHHH---HHHH-TT-STG
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCcHHHHHHHHhccchHHHHHHHHHHH---HHHhCCChhcc
Confidence 36678899999999999999999999988764 5788889999988765 44444322110 0000000001
Q ss_pred -CCCCcc--hhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHC
Q 024066 209 -YGGGFA--SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCEN 252 (273)
Q Consensus 209 -~~~~f~--~~~~~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~ 252 (273)
+++.|. +.....+++.++..+-+.|+|+|.+.++++.|+.-...
T Consensus 212 ll~~~f~~~l~~~~~~lR~vV~~ai~~gipvPalsaaL~Y~ds~~~~ 258 (291)
T PF00393_consen 212 LLDPYFAEELKDNQPSLRRVVSLAIEAGIPVPALSAALSYFDSYRSE 258 (291)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHTTS
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhcccC
Confidence 122232 44556778999999999999999999999888765444
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A .... |
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.84 E-value=0.71 Score=41.69 Aligned_cols=67 Identities=18% Similarity=0.168 Sum_probs=55.4
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
.|....++..++.++||+|.+++|-.+..+.++.. ..++.| ++|.++||++=...-.-..|.+.+.+
T Consensus 183 ~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~--~~~a~M--K~gailIN~aRG~vVde~aL~~AL~~ 249 (324)
T COG0111 183 DGVVGVDSLDELLAEADILTLHLPLTPETRGLINA--EELAKM--KPGAILINAARGGVVDEDALLAALDS 249 (324)
T ss_pred ccceecccHHHHHhhCCEEEEcCCCCcchhcccCH--HHHhhC--CCCeEEEECCCcceecHHHHHHHHHc
Confidence 45677789999999999999999999998887754 344444 56789999999998888889988875
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=87.78 E-value=3 Score=39.97 Aligned_cols=109 Identities=12% Similarity=0.114 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhhcC-CcccccccCCCCCCcccCCCCCCC--CC
Q 024066 140 NGAAAKICNNLTMAVSMLGVSEALTLGQS------LGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVPASRN--YG 210 (273)
Q Consensus 140 ~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~------~Gl~~~~~~~~l~~~~-~~s~~~~~~~~~~~~~~~~~~~~~--~~ 210 (273)
....+.-+.+.+..+.+..++|.+.+-++ .++|..++..+++.++ -+||+++...+ .+.+...-.+ ++
T Consensus 326 ~~~~~~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~---a~~~~~~l~~l~~~ 402 (493)
T PLN02350 326 KKQLIDDVRQALYASKICSYAQGMNLIRAKSVEKGWNLNLGELARIWKGGCIIRAVFLDRIKK---AYDRNPDLASLLVD 402 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCceeeHhHHHHHHH---HHHcCCChhhhcCC
Confidence 35667788999999999999999999883 4789999999999875 56666543221 1110000001 11
Q ss_pred CCcc--hhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 024066 211 GGFA--SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCE 251 (273)
Q Consensus 211 ~~f~--~~~~~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~ 251 (273)
+.|. +.......+.++..+-+.|+|+|.+.+++..|+.-..
T Consensus 403 ~~~~~~~~~~~~~~r~~V~~a~~~gip~P~ls~aL~y~~s~~~ 445 (493)
T PLN02350 403 PEFAKEMVERQAAWRRVVSLAINAGISTPGMSASLAYFDTYRR 445 (493)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcc
Confidence 2222 3344667889999999999999999999996665443
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=87.47 E-value=1.5 Score=38.31 Aligned_cols=62 Identities=18% Similarity=0.098 Sum_probs=43.4
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCC---CCHHHHHHHHHHHhhc
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST---IDPQTSRNISAAVSNC 76 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST---~~P~~~~~l~~~~~~~ 76 (273)
|....++..|++.++|+|+.|.++. ...++... +++ .|+-++.+|+ .+++..+++.+.++++
T Consensus 48 ~~~~~~~~~ell~~~DvVvi~a~~~-~~~~~~~~---al~-----~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~ 112 (265)
T PRK13304 48 GAKACLSIDELVEDVDLVVECASVN-AVEEVVPK---SLE-----NGKDVIIMSVGALADKELFLKLYKLAKEN 112 (265)
T ss_pred CCeeECCHHHHhcCCCEEEEcCChH-HHHHHHHH---HHH-----cCCCEEEEchHHhcCHHHHHHHHHHHHHc
Confidence 5667789999889999999998754 55555532 433 2344555676 4788888888877653
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.76 E-value=0.87 Score=40.91 Aligned_cols=62 Identities=18% Similarity=0.128 Sum_probs=50.6
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
..+..|++++||+|++++|-.+..+..+.. ..++.+ ++|.++||++=...=.-..+.+.+.+
T Consensus 188 ~~~l~ell~~sDiv~l~~Plt~~T~~li~~--~~l~~m--k~ga~lIN~aRG~~Vde~AL~~aL~~ 249 (314)
T PRK06932 188 YTPFEEVLKQADIVTLHCPLTETTQNLINA--ETLALM--KPTAFLINTGRGPLVDEQALLDALEN 249 (314)
T ss_pred cCCHHHHHHhCCEEEEcCCCChHHhcccCH--HHHHhC--CCCeEEEECCCccccCHHHHHHHHHc
Confidence 357899999999999999988888877653 355554 56789999998888778888888875
|
|
| >COG4408 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.69 E-value=13 Score=33.54 Aligned_cols=208 Identities=18% Similarity=0.222 Sum_probs=123.6
Q ss_pred cCCEEEEeCCChHHHHHHHcC--CCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEEecCC
Q 024066 19 ASDVVITMLPSSSHVLDVYNG--PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVS 96 (273)
Q Consensus 19 ~advvi~~v~~~~av~~v~~~--~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~~ldapv~ 96 (273)
++|+-+++++++-+-..++.. +.-++.. .-+.++++-.+-.+-...+.+.+.++.+ -+|.-+.
T Consensus 137 ~~daeViS~SsY~~dTk~id~~~p~~alTk--avKkriYlgs~~~ns~~~e~l~~v~aq~-------------~I~v~~~ 201 (431)
T COG4408 137 GRDAEVISLSSYYADTKYIDAEQPNRALTK--AVKKRIYLGSQHGNSGSAEMLTAVLAQH-------------GIDVEPC 201 (431)
T ss_pred CCCceEEEeehhcccceeecccCcchHHHH--HHhHheeeccCCCCChHHHHHHHHHHhc-------------CCceEEc
Confidence 467777777665443333322 1112211 1234688877777777777788777653 2666677
Q ss_pred CCHHHHhcCceEEEeecCHH--HHHHHHHHHHHhcCCe-EE----eCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 024066 97 GGVLAAEAGTLTFMVGGSED--AYQAAKPLFLSMGKNT-IY----CGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSL 169 (273)
Q Consensus 97 G~~~~a~~g~l~~~vgG~~~--~~~~~~~~l~~~~~~i-~~----~G~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~ 169 (273)
-+|-.|+....+.+|--+-- .| ..+.+|...+... +| -|++- .-++.|+ .....|.+.+..+.
T Consensus 202 esp~~AEtrnit~YVHpPlflndf-sL~aif~~~~~p~yvYKlyPEGPIt----~~lIr~m-----r~lwke~m~ll~r~ 271 (431)
T COG4408 202 ESPLAAETRNITLYVHPPLFLNDF-SLQAIFYPEQRPQYVYKLYPEGPIT----PALIRDM-----RGLWKEYMRLLNRL 271 (431)
T ss_pred CChhhhhhcccceeecCcchhhhh-HHHHHhCCcCCCceeEecCCCCCCC----HHHHHHH-----HHHHHHHHHHHHHc
Confidence 88999998888888877642 22 2456777766542 22 24433 2334443 67789999999999
Q ss_pred CCCHHHHHHHHhhcCC--------cccccccCCCCCCcccCC--------CC---------CCCC-C--C-Cc-------
Q 024066 170 GISASTLTKILNSSSA--------RCWSSDSYNPVPGVMEGV--------PA---------SRNY-G--G-GF------- 213 (273)
Q Consensus 170 Gl~~~~~~~~l~~~~~--------~s~~~~~~~~~~~~~~~~--------~~---------~~~~-~--~-~f------- 213 (273)
|+..-.++..++..-- ..|+ +.+..++.+..+. ++ .|.| + . .|
T Consensus 272 ~ve~iNLLrFl~ddNYPV~~e~l~r~dI-d~F~~~~~i~QeYlLfVRYtalLvDPfS~pDEqG~yfDFSAVpfr~Vy~de 350 (431)
T COG4408 272 GVEEINLLRFLNDDNYPVRAEMLSRRDI-DEFPQLPPIEQEYLLFVRYTALLVDPFSTPDEQGRYFDFSAVPFRTVYQDE 350 (431)
T ss_pred CCCchhHHHHhccCCCCcChhhcCccch-hhcccCChHHHHHHHHHHHHHHhcCCCCCccccCccccccccceeeeeecc
Confidence 9999888888876421 0011 1111111111100 00 1111 1 0 11
Q ss_pred ----chhhH-HHH---HHHHHHHHHHhCCCChHHHHHHHHHHHHHHC
Q 024066 214 ----ASKLM-AKD---LNLALASAKEVGVDCPLTSQAQDIYAKLCEN 252 (273)
Q Consensus 214 ----~~~~~-~KD---~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~ 252 (273)
.+..+ ..| ++.+...|...++++|.++.....|+.++.+
T Consensus 351 ~gl~~lPRvP~EDy~kla~iq~la~~l~v~~Pt~dq~lt~ye~a~k~ 397 (431)
T COG4408 351 NGLWHLPRVPLEDYYKLATIQLLAGALDVVMPTADQLLTRYEQALKA 397 (431)
T ss_pred cccccCCCCcHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Confidence 22222 223 6778899999999999999999999999874
|
|
| >PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=86.24 E-value=10 Score=35.12 Aligned_cols=177 Identities=18% Similarity=0.269 Sum_probs=111.1
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEEecCCCCHHHHhcCceEEEeecCHH--HHHHHHHHHHHh
Q 024066 51 RPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSED--AYQAAKPLFLSM 128 (273)
Q Consensus 51 ~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~--~~~~~~~~l~~~ 128 (273)
+.+++|-+|...-....++.+.+++.| ++.-++.+|-.|+....+++|--+=- .| ..+.+|..-
T Consensus 167 K~kiYigSt~~~s~~~~~l~~~~~~~g-------------I~~~~~~~pl~AE~rNislYVHpplfmndf-sL~aIF~~~ 232 (429)
T PF10100_consen 167 KKKIYIGSTHSNSPELDKLCRLLAQLG-------------IQLEVMDNPLEAESRNISLYVHPPLFMNDF-SLNAIFEED 232 (429)
T ss_pred hceEEEEeCCCCChHHHHHHHHHHHcC-------------CeEEEeCChHhhhhcccceecCChHhhChh-hHHHHhCCC
Confidence 558999888888888888999887642 55566777788888888888875521 11 245566655
Q ss_pred cCC-eEE----eCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCC--------cccccccCCC
Q 024066 129 GKN-TIY----CGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSA--------RCWSSDSYNP 195 (273)
Q Consensus 129 ~~~-i~~----~G~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~--------~s~~~~~~~~ 195 (273)
+.+ .+| =||+- ..+++++ ....-|.+.+-.+.|++.=-++..++...- ..++ +.+..
T Consensus 233 ~~~kYvYKL~PEGPIT----~~~I~~M-----~~lw~Ei~~i~~~l~~~~~NLLkFm~ddNYPV~~eslsr~~I-e~F~~ 302 (429)
T PF10100_consen 233 GVPKYVYKLFPEGPIT----PTLIRDM-----VQLWKEIMEILNKLGIEPFNLLKFMNDDNYPVRPESLSRDDI-ESFEE 302 (429)
T ss_pred CCcceEEecCCCCCCC----HHHHHHH-----HHHHHHHHHHHHHcCCCcchHHHHhccCCCCCChhhCCHHHH-hhhhc
Confidence 443 122 24443 3344443 567889999999999999889998887311 0000 11111
Q ss_pred CCCcccCC--------CC---------CCCC-C--------------CCcchhhHHHH----HHHHHHHHHHhCCCChHH
Q 024066 196 VPGVMEGV--------PA---------SRNY-G--------------GGFASKLMAKD----LNLALASAKEVGVDCPLT 239 (273)
Q Consensus 196 ~~~~~~~~--------~~---------~~~~-~--------------~~f~~~~~~KD----~~~~~~~a~~~g~~~~~~ 239 (273)
++.+-.+. ++ +|.| + +-+.+..+.|+ +.++...|+..|+++|++
T Consensus 303 l~~i~QEYLLYVRYtsiLIDPFS~PD~~GrYFDFSAVp~~~i~~d~~g~w~iPRmP~EDy~r~~~i~~la~~l~v~~Pti 382 (429)
T PF10100_consen 303 LPAIHQEYLLYVRYTSILIDPFSEPDEQGRYFDFSAVPYKKIFKDEEGLWDIPRMPKEDYYRLKIIQGLARALNVSCPTI 382 (429)
T ss_pred CChHHhhHHHHHHhhhheeCCCCCCCCCCCcccccccceeeeeecCCCcccCCCCCHHHHHHHHHHHHHHHHhCCCCcHH
Confidence 11110000 00 1211 1 01234444333 778999999999999999
Q ss_pred HHHHHHHHHHHH
Q 024066 240 SQAQDIYAKLCE 251 (273)
Q Consensus 240 ~~~~~~~~~a~~ 251 (273)
+...+.|+....
T Consensus 383 d~~l~~Ye~~l~ 394 (429)
T PF10100_consen 383 DRFLARYESKLS 394 (429)
T ss_pred HHHHHHHHHHHH
Confidence 999999998866
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=85.85 E-value=1.3 Score=40.10 Aligned_cols=65 Identities=14% Similarity=0.134 Sum_probs=54.7
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
+++..+ +.|++++||+|.+.+|-.++.+.++.. ..++.| +++.++||++=...-..+.+.+.+++
T Consensus 188 ~~~y~~-l~ell~~sDii~l~~Plt~~T~hLin~--~~l~~m--k~ga~lVNtaRG~~VDe~ALi~AL~~ 252 (324)
T COG1052 188 GARYVD-LDELLAESDIISLHCPLTPETRHLINA--EELAKM--KPGAILVNTARGGLVDEQALIDALKS 252 (324)
T ss_pred Cceecc-HHHHHHhCCEEEEeCCCChHHhhhcCH--HHHHhC--CCCeEEEECCCccccCHHHHHHHHHh
Confidence 356666 999999999999999999999888754 356665 56789999999999999999999976
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.42 E-value=0.91 Score=40.73 Aligned_cols=62 Identities=13% Similarity=0.119 Sum_probs=50.7
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
..+..|++++||+|++++|-.+..+.++.. ..++.+ +++.++||++=...=.-..+.+.+.+
T Consensus 187 ~~~l~ell~~sDvv~lh~Plt~~T~~li~~--~~~~~M--k~~a~lIN~aRG~vVDe~AL~~AL~~ 248 (311)
T PRK08410 187 RVSLEELLKTSDIISIHAPLNEKTKNLIAY--KELKLL--KDGAILINVGRGGIVNEKDLAKALDE 248 (311)
T ss_pred eecHHHHhhcCCEEEEeCCCCchhhcccCH--HHHHhC--CCCeEEEECCCccccCHHHHHHHHHc
Confidence 347899999999999999999888877653 355554 56789999999888888889888875
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=85.08 E-value=1.5 Score=40.56 Aligned_cols=62 Identities=13% Similarity=0.037 Sum_probs=50.1
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
..+..|++++||+|++++|-.+..+..+.. ..++.| ++|.++||++=..-=.-..+.+.+.+
T Consensus 227 ~~~L~ell~~sDiV~lh~Plt~~T~~lin~--~~l~~M--K~ga~lIN~aRG~lVDe~AL~~AL~s 288 (386)
T PLN02306 227 ASSMEEVLREADVISLHPVLDKTTYHLINK--ERLALM--KKEAVLVNASRGPVIDEVALVEHLKA 288 (386)
T ss_pred cCCHHHHHhhCCEEEEeCCCChhhhhhcCH--HHHHhC--CCCeEEEECCCccccCHHHHHHHHHh
Confidence 468999999999999999988888877754 355555 56789999998877777788888865
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.65 E-value=1.2 Score=40.07 Aligned_cols=61 Identities=15% Similarity=0.080 Sum_probs=49.8
Q ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 11 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 11 ~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
.+..|++++||+|++++|-.++.+..+.. ..++.+ ++|.++||++=...=.-..+.+.+.+
T Consensus 189 ~~l~ell~~sDiv~l~lPlt~~T~~li~~--~~~~~m--k~ga~lIN~aRG~vVde~AL~~AL~~ 249 (317)
T PRK06487 189 LPLDELLPQVDALTLHCPLTEHTRHLIGA--RELALM--KPGALLINTARGGLVDEQALADALRS 249 (317)
T ss_pred cCHHHHHHhCCEEEECCCCChHHhcCcCH--HHHhcC--CCCeEEEECCCccccCHHHHHHHHHc
Confidence 47899999999999999999898877653 355554 56789999998887777788888875
|
|
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=84.13 E-value=1.8 Score=39.23 Aligned_cols=62 Identities=13% Similarity=0.126 Sum_probs=52.6
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
..+..|.+.++|+|++|+|..+..+.++.. .+++.+ .+|.++||.+=...-.-+++.+.+.+
T Consensus 208 ~~d~~~~~~~sD~ivv~~pLt~~T~~liNk--~~~~~m--k~g~vlVN~aRG~iide~~l~eaL~s 269 (336)
T KOG0069|consen 208 FVDIEELLANSDVIVVNCPLTKETRHLINK--KFIEKM--KDGAVLVNTARGAIIDEEALVEALKS 269 (336)
T ss_pred ccCHHHHHhhCCEEEEecCCCHHHHHHhhH--HHHHhc--CCCeEEEeccccccccHHHHHHHHhc
Confidence 457788999999999999999999998875 477765 46789999999998888889888875
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.72 E-value=1.4 Score=39.91 Aligned_cols=122 Identities=22% Similarity=0.198 Sum_probs=68.3
Q ss_pred CHHHH-HhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceE
Q 024066 12 TPFEV-AEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVM 90 (273)
Q Consensus 12 s~~e~-~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~~ 90 (273)
++.+. ..+||+||+|+|+..+.+-|-. ++. .+..|||+|+-.--.-.++=+.+-.. ++. +-.+
T Consensus 62 ~~~~~~~~~~DvvFlalPhg~s~~~v~~----l~~-----~g~~VIDLSadfR~~d~~~ye~~Yg~---~h~----~~~~ 125 (349)
T COG0002 62 DPEKIELDECDVVFLALPHGVSAELVPE----LLE-----AGCKVIDLSADFRLKDPEVYEKWYGF---THA----GPEL 125 (349)
T ss_pred ChhhhhcccCCEEEEecCchhHHHHHHH----HHh-----CCCeEEECCcccccCCHHHHHHhhCC---CCC----Cchh
Confidence 33443 4459999999999977664432 332 24469999997654333333322110 011 1345
Q ss_pred EEecCCCCHHH----HhcCceEEEeecC-HHHHHHHHHHHHH----hcCC-eEEe--CCcChHHHHHHHHH
Q 024066 91 LDAPVSGGVLA----AEAGTLTFMVGGS-EDAYQAAKPLFLS----MGKN-TIYC--GGAGNGAAAKICNN 149 (273)
Q Consensus 91 ldapv~G~~~~----a~~g~l~~~vgG~-~~~~~~~~~~l~~----~~~~-i~~~--G~~g~a~~~Kl~~n 149 (273)
++--|.|=|.. .+..++.-.-|+- ..+.-.+.|+++. .... ++.. |-.|.|...+.-+.
T Consensus 126 l~~avYGLpEl~~e~i~~A~lIAnPGCypTa~iLal~PL~~~~ll~~~~~~ivdakSG~SGaGrk~s~~~~ 196 (349)
T COG0002 126 LEDAVYGLPELHREKIRGAKLIANPGCYPTAAILALAPLVKAGLLDPDSPPIVDAKSGVSGAGRKASVKNH 196 (349)
T ss_pred hhcccccCcccCHHHHhcCCEeeCCCchHHHHHHHHHHHHHcCCcCCCCceEEEEeEecCcCCCCcccccc
Confidence 66666665443 3444555666664 3566678899987 3443 2322 44677766655433
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=83.27 E-value=0.97 Score=36.13 Aligned_cols=63 Identities=21% Similarity=0.259 Sum_probs=38.1
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCC-CHHHHHHHHHHHhh
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI-DPQTSRNISAAVSN 75 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~-~P~~~~~l~~~~~~ 75 (273)
..+.+++.++++++|+||+++|.. ..++++.. +.+.+ ..++++|.++-. .+++...+.+.+++
T Consensus 57 i~~t~dl~~a~~~ad~IiiavPs~-~~~~~~~~---l~~~l--~~~~~ii~~~KG~~~~~~~~~~~~i~~ 120 (157)
T PF01210_consen 57 IKATTDLEEALEDADIIIIAVPSQ-AHREVLEQ---LAPYL--KKGQIIISATKGFEPGTLLLLSEVIEE 120 (157)
T ss_dssp EEEESSHHHHHTT-SEEEE-S-GG-GHHHHHHH---HTTTS--HTT-EEEETS-SEETTEEEEHHHHHHH
T ss_pred cccccCHHHHhCcccEEEecccHH-HHHHHHHH---Hhhcc--CCCCEEEEecCCcccCCCccHHHHHHH
Confidence 446778999999999999999986 56788764 44432 345677766644 34454455555544
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=82.52 E-value=1.3 Score=36.28 Aligned_cols=107 Identities=19% Similarity=0.237 Sum_probs=56.2
Q ss_pred CCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEE-EEcCCCCHHHHHHHHHHHhhchhhhccCCCC
Q 024066 8 PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSWE 86 (273)
Q Consensus 8 ~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~ii-id~ST~~P~~~~~l~~~~~~~g~~~~~g~~~ 86 (273)
+..++..+++ +||+||=|+|.+-.++.-++. .+-+. .++..++ -++|+.++. ++++.+... ++ .-
T Consensus 68 ~~~~dl~~~~-~adlViEai~E~l~~K~~~~~--~l~~~--~~~~~ilasnTSsl~i~---~la~~~~~p---~R---~i 133 (180)
T PF02737_consen 68 SFTTDLEEAV-DADLVIEAIPEDLELKQELFA--ELDEI--CPPDTILASNTSSLSIS---ELAAALSRP---ER---FI 133 (180)
T ss_dssp EEESSGGGGC-TESEEEE-S-SSHHHHHHHHH--HHHCC--S-TTSEEEE--SSS-HH---HHHTTSSTG---GG---EE
T ss_pred ccccCHHHHh-hhheehhhccccHHHHHHHHH--HHHHH--hCCCceEEecCCCCCHH---HHHhccCcC---ce---EE
Confidence 4567888888 999999999999888765543 13322 1233333 245555544 445544211 01 01
Q ss_pred CceEEEecCCCCHHHHhcCceE-EEeec--CHHHHHHHHHHHHHhcCCeEEeC
Q 024066 87 NPVMLDAPVSGGVLAAEAGTLT-FMVGG--SEDAYQAAKPLFLSMGKNTIYCG 136 (273)
Q Consensus 87 g~~~ldapv~G~~~~a~~g~l~-~~vgG--~~~~~~~~~~~l~~~~~~i~~~G 136 (273)
|.+|.. |.-.. .+. ++.|. ++++++++..+++.+++..+.+.
T Consensus 134 g~Hf~~-P~~~~-------~lVEvv~~~~T~~~~~~~~~~~~~~~gk~pv~v~ 178 (180)
T PF02737_consen 134 GMHFFN-PPHLM-------PLVEVVPGPKTSPETVDRVRALLRSLGKTPVVVK 178 (180)
T ss_dssp EEEE-S-STTT---------EEEEEE-TTS-HHHHHHHHHHHHHTT-EEEEEE
T ss_pred EEeccc-ccccC-------ceEEEeCCCCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 244442 33222 223 33333 56899999999999999877663
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=81.02 E-value=28 Score=34.70 Aligned_cols=113 Identities=10% Similarity=0.100 Sum_probs=73.5
Q ss_pred EEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEE-ecCCCCHHH
Q 024066 23 VITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVLA 101 (273)
Q Consensus 23 vi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~~ld-apv~G~~~~ 101 (273)
||+|+|-. +..+++.. +.+.+ +++.+|.|.+++--.-.+++.+.+... ...|+- =|+.|+...
T Consensus 1 vila~Pv~-~~~~~~~~---~~~~~--~~~~~vtDv~SvK~~i~~~~~~~l~~~----------~~~fvg~HPMaG~e~~ 64 (673)
T PRK11861 1 VLLAAPVA-QTGPLLAR---IAPFL--DASTIVTDAGSTKSDVVAAARAALGAR----------IGQFVPGHPIAGRESS 64 (673)
T ss_pred CEEEcCHH-HHHHHHHH---HhhhC--CCCcEEEecCcccHHHHHHHHHhcccc----------CCeEEecCCcCcCcch
Confidence 68899965 55666653 44432 356899999999987777766654320 134665 578876543
Q ss_pred H--------hcCceEEEeec---CHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHH
Q 024066 102 A--------EAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLT 151 (273)
Q Consensus 102 a--------~~g~l~~~vgG---~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~ 151 (273)
- -+|...+++=. +++.++.++.+++.+|.+++.+.+-..=..+=++.-+-
T Consensus 65 G~~~a~~~Lf~~~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlp 125 (673)
T PRK11861 65 GVDAALADLYVGRNVVLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVFAAVSHLP 125 (673)
T ss_pred hhhhhChhHhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHH
Confidence 3 24555677632 56788999999999999988886644444444444433
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=80.02 E-value=0.83 Score=40.00 Aligned_cols=50 Identities=10% Similarity=0.022 Sum_probs=32.2
Q ss_pred hcCCEEEEeCCChH--HHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 18 EASDVVITMLPSSS--HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 18 ~~advvi~~v~~~~--av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
.++|+||.|+|..- .+.++... .+. ..++.+++|+++..++| .+.+++++
T Consensus 177 ~~~DivInatp~gm~~~~~~~~~~----~~~--l~~~~~v~D~~y~p~~T--~ll~~A~~ 228 (270)
T TIGR00507 177 HRVDLIINATSAGMSGNIDEPPVP----AEK--LKEGMVVYDMVYNPGET--PFLAEAKS 228 (270)
T ss_pred cCccEEEECCCCCCCCCCCCCCCC----HHH--cCCCCEEEEeccCCCCC--HHHHHHHH
Confidence 47999999999752 22211110 111 13457999999999887 57777665
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 273 | ||||
| 2i9p_A | 319 | Crystal Structure Of Human Hydroxyisobutyrate Dehyd | 2e-68 | ||
| 2gf2_A | 296 | Crystal Structure Of Human Hydroxyisobutyrate Dehyd | 3e-68 | ||
| 3obb_A | 300 | Crystal Structure Of A Possible 3-Hydroxyisobutyrat | 3e-38 | ||
| 3q3c_A | 299 | Crystal Structure Of A Serine Dehydrogenase From Ps | 4e-38 | ||
| 3cky_A | 301 | Structural And Kinetic Properties Of A Beta-Hydroxy | 1e-33 | ||
| 1yb4_A | 295 | Crystal Structure Of The Tartronic Semialdehyde Red | 8e-27 | ||
| 3pef_A | 287 | Crystal Structure Of Gamma-Hydroxybutyrate Dehydrog | 1e-26 | ||
| 1vpd_A | 299 | X-Ray Crystal Structure Of Tartronate Semialdehyde | 4e-25 | ||
| 1wp4_A | 289 | Structure Of Tt368 Protein From Thermus Thermophilu | 1e-23 | ||
| 3pdu_A | 287 | Crystal Structure Of Gamma-Hydroxybutyrate Dehydrog | 1e-22 | ||
| 2cvz_A | 289 | Structure Of Hydroxyisobutyrate Dehydrogenase From | 2e-22 | ||
| 2uyy_A | 316 | Structure Of The Cytokine-Like Nuclear Factor N-Pac | 3e-20 | ||
| 3doj_A | 310 | Structure Of Glyoxylate Reductase 1 From Arabidopsi | 1e-18 | ||
| 4dll_A | 320 | Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Re | 3e-14 | ||
| 3g0o_A | 303 | Crystal Structure Of 3-Hydroxyisobutyrate Dehydroge | 4e-10 | ||
| 3qha_A | 296 | Crystal Structure Of A Putative Oxidoreductase From | 5e-09 |
| >pdb|2I9P|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate Dehydrogenase Complexed With Nad+ Length = 319 | Back alignment and structure |
|
| >pdb|2GF2|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate Dehydrogenase Length = 296 | Back alignment and structure |
|
| >pdb|3OBB|A Chain A, Crystal Structure Of A Possible 3-Hydroxyisobutyrate Dehydrogenase From Pseudomonas Aeruginosa Pao1 Length = 300 | Back alignment and structure |
|
| >pdb|3Q3C|A Chain A, Crystal Structure Of A Serine Dehydrogenase From Pseudomonas Aeruginosa Pao1 In Complex With Nad Length = 299 | Back alignment and structure |
|
| >pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid Dehydrogenase Involved In Nicotinate Fermentation Length = 301 | Back alignment and structure |
|
| >pdb|1YB4|A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase From Salmonella Typhimurium Lt2 Length = 295 | Back alignment and structure |
|
| >pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase From Geobacter Metallireducens In Complex With Nadp+ Length = 287 | Back alignment and structure |
|
| >pdb|1VPD|A Chain A, X-Ray Crystal Structure Of Tartronate Semialdehyde Reductase [salmonella Typhimurium Lt2] Length = 299 | Back alignment and structure |
|
| >pdb|1WP4|A Chain A, Structure Of Tt368 Protein From Thermus Thermophilus Hb8 Length = 289 | Back alignment and structure |
|
| >pdb|3PDU|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase From Geobacter Sulfurreducens In Complex With Nadp+ Length = 287 | Back alignment and structure |
|
| >pdb|2CVZ|A Chain A, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus Thermophilus Hb8 Length = 289 | Back alignment and structure |
|
| >pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac Length = 316 | Back alignment and structure |
|
| >pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis (Atglyr1) Length = 310 | Back alignment and structure |
|
| >pdb|4DLL|A Chain A, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase From Polaromonas Sp. Js666 Length = 320 | Back alignment and structure |
|
| >pdb|3G0O|A Chain A, Crystal Structure Of 3-Hydroxyisobutyrate Dehydrogenase (Ygbj) From Salmonella Typhimurium Length = 303 | Back alignment and structure |
|
| >pdb|3QHA|A Chain A, Crystal Structure Of A Putative Oxidoreductase From Mycobacterium Avium 104 Length = 296 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 273 | |||
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 1e-122 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 1e-119 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 1e-102 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 3e-97 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 6e-91 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 4e-90 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 8e-90 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 4e-88 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 2e-87 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 1e-81 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 2e-81 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 4e-80 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 5e-71 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 8e-67 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 8e-45 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 2e-39 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 2e-30 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 3e-05 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 2e-04 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 7e-04 |
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* Length = 296 | Back alignment and structure |
|---|
Score = 348 bits (895), Expect = e-122
Identities = 132/269 (49%), Positives = 170/269 (63%), Gaps = 12/269 (4%)
Query: 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 61
F D G +P +VAE +D +ITMLP+S + ++ Y+G NG+L+ + LLIDSSTI
Sbjct: 39 FQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVK--KGSLLIDSSTI 96
Query: 62 DPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAA 121
DP S+ ++ +++ V +DAPVSGGV AA +G LTFMVGG ED + AA
Sbjct: 97 DPAVSKELAKE-----VEKM-----GAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAA 146
Query: 122 KPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 181
+ L MG N +YCG G G AAKICNN+ +A+SM+G +EA+ LG LG+ L KILN
Sbjct: 147 QELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILN 206
Query: 182 SSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQ 241
SS RCWSSD+YNPVPGVM+GVP++ NY GGF + LMAKDL LA SA L S
Sbjct: 207 MSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSL 266
Query: 242 AQDIYAKLCENGHDSKDFSCVFQHYYGGK 270
A IY +C G+ KDFS VFQ +
Sbjct: 267 AHQIYRMMCAKGYSKKDFSSVFQFLREEE 295
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} Length = 301 | Back alignment and structure |
|---|
Score = 299 bits (769), Expect = e-102
Identities = 90/266 (33%), Positives = 135/266 (50%), Gaps = 20/266 (7%)
Query: 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP-QLLIDSST 60
G E +VA ASD++ T LP++ V V NGP G+L + +++D S+
Sbjct: 43 VVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGGVLSA---CKAGTVIVDMSS 99
Query: 61 IDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQA 120
+ P ++ ++ EK +DAPVSGG AEAGTLT MVG SE ++
Sbjct: 100 VSPSSTLKMAKV-----AAEK-----GIDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEK 149
Query: 121 AKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 180
+P+ +GK+ + G G G A KI NNL + +M ++EAL LG G+ T+ +I+
Sbjct: 150 IQPVLSVIGKDIYHVGDTGAGDAVKIVNNLLLGCNMASLAEALVLGVKCGLKPETMQEII 209
Query: 181 NSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTS 240
SS R ++ ++ ME S ++ GGFA L KDL LAL + KE V P+T+
Sbjct: 210 GKSSGRSYAMEAK------MEKFIMSGDFAGGFAMDLQHKDLGLALEAGKEGNVPLPMTA 263
Query: 241 QAQDIYAKLCENGHDSKDFSCVFQHY 266
A I+ G +D S V + +
Sbjct: 264 MATQIFEGGRAMGLGREDMSAVIKVW 289
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} Length = 296 | Back alignment and structure |
|---|
Score = 286 bits (733), Expect = 3e-97
Identities = 67/258 (25%), Positives = 107/258 (41%), Gaps = 17/258 (6%)
Query: 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 61
++ G ++ +VA A + IT+L + V +V G + G ++ STI
Sbjct: 54 LAEAGATLADSVADVAAADLIHITVLDDA-QVREVVGELAGHAKPG-----TVIAIHSTI 107
Query: 62 DPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAA 121
T+ ++ LK + + ++DAPVSGG AA G L MVG + Y+
Sbjct: 108 SDTTAVELARD-----LKAR-----DIHIVDAPVSGGAAAAARGELATMVGADREVYERI 157
Query: 122 KPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 181
KP F I+ G G G K+ N+ S EA+ L ++ G+ L +++
Sbjct: 158 KPAFKHWAAVVIHAGEPGAGTRMKLARNMLTFTSYAAACEAMKLAEAAGLDLQALGRVVR 217
Query: 182 SSSARCWSSDSYNPVPGVMEGVPASRNY-GGGFASKLMAKDLNLALASAKEVGVDCPLTS 240
+ A + + + P + Y L KDL+LALA + V VD PL
Sbjct: 218 HTDALTGGPGAIMVRDNMKDLEPDNFLYQPFLHTRGLGEKDLSLALALGEAVSVDLPLAR 277
Query: 241 QAQDIYAKLCENGHDSKD 258
A + A H K+
Sbjct: 278 LAYEGLAAGLGVPHKEKE 295
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 Length = 299 | Back alignment and structure |
|---|
Score = 270 bits (693), Expect = 6e-91
Identities = 91/264 (34%), Positives = 132/264 (50%), Gaps = 21/264 (7%)
Query: 4 DMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP-QLLIDSSTID 62
G T T +AE DV+ITMLP+S HV +V G NG+++G +P +LID S+I
Sbjct: 46 AAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEG---AKPGTVLIDMSSIA 102
Query: 63 PQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAK 122
P SR IS A LK K MLDAPVSGG A GTL+ MVGG + +
Sbjct: 103 PLASREISDA-----LKAK-----GVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYY 152
Query: 123 PLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNS 182
L +M + ++ G G G K+ N + +A+++ +SEALTL G++ + + +
Sbjct: 153 DLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRG 212
Query: 183 SSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQA 242
A D+ P + RN+ GF L KDL AL ++ VG PLT+
Sbjct: 213 GLAGSTVLDAKAP-------MVMDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAV 265
Query: 243 QDIYAKLCENGHDSKDFSCVFQHY 266
++ L +GH + D S + +Y
Sbjct: 266 MEMMQALRADGHGNDDHSALACYY 289
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} Length = 287 | Back alignment and structure |
|---|
Score = 267 bits (686), Expect = 4e-90
Identities = 77/266 (28%), Positives = 116/266 (43%), Gaps = 21/266 (7%)
Query: 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP-QLLIDSST 60
+ +G TP EV E+ V ML + +V G +G+L+G + + +D ST
Sbjct: 40 LAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGVLEG---IGEGRGYVDMST 96
Query: 61 IDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQA 120
+DP TS+ I A + K L+APVSG AE GTL + G + Y
Sbjct: 97 VDPATSQRIGVA-----VVAK-----GGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDE 146
Query: 121 AKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 180
A P F MGK I+ G G GA K+ N+ M M E L LG+ G++ + ++
Sbjct: 147 AMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVI 206
Query: 181 NSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTS 240
+ + + RN+ F K M KDL LA+A VG ++
Sbjct: 207 GAGAMANPMFALKGG-------LIRDRNFAPAFPLKHMQKDLRLAVALGDRVGQPLVASA 259
Query: 241 QAQDIYAKLCENGHDSKDFSCVFQHY 266
A +++ G +DFS +F+ Y
Sbjct: 260 AANELFKGARAAGFGDEDFSAIFKTY 285
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* Length = 289 | Back alignment and structure |
|---|
Score = 267 bits (684), Expect = 8e-90
Identities = 72/256 (28%), Positives = 115/256 (44%), Gaps = 24/256 (9%)
Query: 12 TPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNIS 70
P E + V+ T LP++ V +V L +R +D+++ +P+ SR ++
Sbjct: 48 VPLERVAEARVIFTCLPTTREVYEVAEA---LYPY---LREGTYWVDATSGEPEASRRLA 101
Query: 71 AAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGK 130
L+EK LDAPVSGG AEAGTLT M+GG E+A + +P L+ K
Sbjct: 102 ER-----LREK-----GVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPF-LAYAK 150
Query: 131 NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSS 190
++ G G G A K NN +AV++ E L G+SA +++N+SS R ++
Sbjct: 151 KVVHVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNAT 210
Query: 191 DSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLC 250
++ P +R + FA L+ KDL +A+ PL A+++Y
Sbjct: 211 ENLIPQR------VLTRAFPKTFALGLLVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAK 264
Query: 251 ENGHDSKDFSCVFQHY 266
D +
Sbjct: 265 RELGPDADHVEALRLL 280
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} Length = 287 | Back alignment and structure |
|---|
Score = 262 bits (673), Expect = 4e-88
Identities = 73/266 (27%), Positives = 117/266 (43%), Gaps = 21/266 (7%)
Query: 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP-QLLIDSST 60
+G +P EV A D+ I ML + +V G NG+L+G + + ID ST
Sbjct: 40 LVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANGVLEG---IGGGRGYIDMST 96
Query: 61 IDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQA 120
+D +TS I AA + + L+APVSG AE GTL + G + +
Sbjct: 97 VDDETSTAIGAA-----VTARGGR-----FLEAPVSGTKKPAEDGTLIILAAGDQSLFTD 146
Query: 121 AKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 180
A P F ++GK ++ G G GA K+ N+ M M + E + LG++ G+ L ++L
Sbjct: 147 AGPAFAALGKKCLHLGEVGQGARMKLVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVL 206
Query: 181 NSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTS 240
++ + + S + F K M KDL LA+ +G +
Sbjct: 207 DAGAMANPMFKGKGQ-------MLLSGEFPTSFPLKHMQKDLRLAVELGDRLGQPLHGAA 259
Query: 241 QAQDIYAKLCENGHDSKDFSCVFQHY 266
A + + + GH +DF+ VF+
Sbjct: 260 TANESFKRARAAGHADEDFAAVFRVL 285
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} Length = 303 | Back alignment and structure |
|---|
Score = 261 bits (669), Expect = 2e-87
Identities = 67/263 (25%), Positives = 115/263 (43%), Gaps = 22/263 (8%)
Query: 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQ 64
+ E A D ++ ++ +++ V V G +G+ ++P ++ SSTI
Sbjct: 51 ACGAAASAREFAGVVDALVILVVNAAQVRQVLFGEDGVAHL---MKPGSAVMVSSTISSA 107
Query: 65 TSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPL 124
++ I+AA L N MLDAPVSGG + A G +T M GSE A+ KP+
Sbjct: 108 DAQEIAAA-----LTAL-----NLNMLDAPVSGGAVKAAQGEMTVMASGSEAAFTRLKPV 157
Query: 125 FLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS 183
++ N G G+ KI + L V + +EA+ L GI + ++ +
Sbjct: 158 LDAVASNVYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALAARAGIPLDVMYDVVTHA 217
Query: 184 SARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQ 243
+ W + N + V++ +Y A + KDL L +AK + PL S A
Sbjct: 218 AGNSWMFE--NRMQHVVD-----GDYTPRSAVDIFVKDLGLVADTAKALRFPLPLASTAL 270
Query: 244 DIYAKLCENGHDSKDFSCVFQHY 266
+++ G+ +D S V + +
Sbjct: 271 NMFTSASNAGYGKEDDSAVIKIF 293
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} Length = 316 | Back alignment and structure |
|---|
Score = 247 bits (633), Expect = 1e-81
Identities = 71/266 (26%), Positives = 106/266 (39%), Gaps = 21/266 (7%)
Query: 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP-QLLIDSST 60
F G TP EV D+ + D+ GP+G+LQG +RP + +D ST
Sbjct: 69 FIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQG---IRPGKCYVDMST 125
Query: 61 IDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQA 120
+D T ++ + + L+APVSG + G L + G Y+
Sbjct: 126 VDADTVTELAQV-----IVSRGGR-----FLEAPVSGNQQLSNDGMLVILAAGDRGLYED 175
Query: 121 AKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 180
F +MGK + + G GN A + N+ M ++E LTL Q G S TL IL
Sbjct: 176 CSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDIL 235
Query: 181 NSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTS 240
N D + N+ F K + KDL LA+A V P+ +
Sbjct: 236 NQGQLASIFLDQKCQ---NI----LQGNFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAA 288
Query: 241 QAQDIYAKLCENGHDSKDFSCVFQHY 266
A ++Y + D S V++ Y
Sbjct: 289 AANEVYKRAKALDQSDNDMSAVYRAY 314
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} Length = 310 | Back alignment and structure |
|---|
Score = 246 bits (630), Expect = 2e-81
Identities = 75/266 (28%), Positives = 108/266 (40%), Gaps = 21/266 (7%)
Query: 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP-QLLIDSST 60
+ G E+P EV + I ML L V G+L+ + + ID ST
Sbjct: 60 LVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVVFDKGGVLEQ---ICEGKGYIDMST 116
Query: 61 IDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQA 120
+D +TS I+ A + K ++ PVSG AE G L + G + ++
Sbjct: 117 VDAETSLKINEA-----ITGKGGR-----FVEGPVSGSKKPAEDGQLIILAAGDKALFEE 166
Query: 121 AKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 180
+ P F +GK + Y G GNGA K+ N+ M M SE L L G+S+ TL IL
Sbjct: 167 SIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDIL 226
Query: 181 NSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTS 240
+ + P +Y F K KD+ LALA E V P+ +
Sbjct: 227 DLGAMTNPMFKGKGP-------SMNKSSYPPAFPLKHQQKDMRLALALGDENAVSMPVAA 279
Query: 241 QAQDIYAKLCENGHDSKDFSCVFQHY 266
A + + K G DFS V +
Sbjct: 280 AANEAFKKARSLGLGDLDFSAVIEAV 305
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} Length = 295 | Back alignment and structure |
|---|
Score = 242 bits (621), Expect = 4e-80
Identities = 78/264 (29%), Positives = 121/264 (45%), Gaps = 21/264 (7%)
Query: 4 DMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP-QLLIDSSTID 62
+G ET +V E +D++ M+P + V DV G +G + + ++D S+I
Sbjct: 43 SLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHGCAKT---SLQGKTIVDMSSIS 99
Query: 63 PQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAK 122
P ++ + + E LDAPVSGG + A GTL+ MVGG + + K
Sbjct: 100 PIETKRFAQR-----VNEM-----GADYLDAPVSGGEIGAREGTLSIMVGGEQKVFDRVK 149
Query: 123 PLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNS 182
PLF +GKN GG G+G K+ N + +A+++ VSEAL G + + L
Sbjct: 150 PLFDILGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGADPVRVRQALMG 209
Query: 183 SSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQA 242
A + + +R + GF L KDLNLAL SAK + ++ P T+
Sbjct: 210 GFASSRILEVHGE-------RMINRTFEPGFKIALHQKDLNLALQSAKALALNLPNTATC 262
Query: 243 QDIYAKLCENGHDSKDFSCVFQHY 266
Q+++ NG D S + Q
Sbjct: 263 QELFNTCAANGGSQLDHSAMVQAL 286
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} Length = 320 | Back alignment and structure |
|---|
Score = 220 bits (562), Expect = 5e-71
Identities = 68/264 (25%), Positives = 118/264 (44%), Gaps = 23/264 (8%)
Query: 4 DMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP-QLLIDSSTID 62
+G E A +D+V++ML + + V DV G+ ++P L +D ++I
Sbjct: 72 ALGATIHEQARAAARDADIVVSMLENGAVVQDVLFA-QGVAAA---MKPGSLFLDMASIT 127
Query: 63 PQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAK 122
P+ +R+ +A L + LD PVSGG + AE GTL M GG ++ +
Sbjct: 128 PREARDHAAR-----LGALGIA-----HLDTPVSGGTVGAEQGTLVIMAGGKPADFERSL 177
Query: 123 PLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNS 182
PL G+ + G G+G K+ N + + +++ V+EAL G + + + +
Sbjct: 178 PLLKVFGR-ATHVGPHGSGQLTKLANQMIVGITIGAVAEALLFATKGGADMAKVKEAITG 236
Query: 183 SSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQA 242
A + M R++ + KD+ ALA+A+E+G D P+T
Sbjct: 237 GFADSRVLQLHGQ---RM----VERDFAPRARLSIQLKDMRNALATAQEIGFDAPITGLF 289
Query: 243 QDIYAKLCENGHDSKDFSCVFQHY 266
+ +YA+ E+G D S +F
Sbjct: 290 EQLYAEGVEHGLTDLDQSGLFVEL 313
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} Length = 306 | Back alignment and structure |
|---|
Score = 209 bits (533), Expect = 8e-67
Identities = 33/264 (12%), Positives = 81/264 (30%), Gaps = 21/264 (7%)
Query: 4 DMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDP 63
G E+ AS I +L + +V G G+ + + + ++D +T
Sbjct: 50 AAGAHLCESVKAALSASPATIFVLLDNHATHEVL-GMPGVARA---LAHRTIVDYTTNAQ 105
Query: 64 QTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKP 123
+ + + + + + G +A++ +
Sbjct: 106 DEGLALQGL-----VNQA-----GGHYVKGMIVAYPRNVGHRESHSIHTGDREAFEQHRA 155
Query: 124 LFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS 183
L + +T++ A A + + +M+ EA+ G G+ S ++L +
Sbjct: 156 LLEGLAGHTVFLPWDEALAFATVLHAH-AFAAMVTFFEAVGAGDRFGLPVSKTARLLLET 214
Query: 184 SARCWSSDSYNPVPGVMEGVPASRNY-GGGFASKLMAKDLNLALASAKEVGVDCPLTSQA 242
S + ++++ G + A S GV P+
Sbjct: 215 SRFFVA-----DALEEAVRRLETQDFKGDQARLDVHADAFAHIAQSLHAQGVWTPVFDAV 269
Query: 243 QDIYAKLCENGHDSKDFSCVFQHY 266
+ + G+ +D + + +
Sbjct: 270 CQVVQRAAAMGYGDQDIAATTKSF 293
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} Length = 312 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 8e-45
Identities = 44/255 (17%), Positives = 79/255 (30%), Gaps = 28/255 (10%)
Query: 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQT 65
GV K + EVA DV+ +++ + + + L +G L D ++ P
Sbjct: 70 GVSCKASVAEVAGECDVIFSLVTAQAALEVAQQAGPHLCEG------ALYADFTSCSPAV 123
Query: 66 SRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLF 125
R I +S + V V G +V + A +
Sbjct: 124 KRAIGDVIS--------RHRPSAQYAAVAVMSAV--KPHGHRVPLVVDGDGARRFQAAFT 173
Query: 126 LSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSA 185
L + + G G A K+C + + EAL + +G++ L + S
Sbjct: 174 LYGCRIEVLDGEVGGAALLKMCRSAVLKGLEALFLEALAAAEKMGLADRVLASLDASFPE 233
Query: 186 RCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDI 245
+ V +E A R A +L A+ VGV+ +
Sbjct: 234 HHLRDLALYLVERNLE--HADR----------RAHELGEVAATLCSVGVEPLVAEAGYRR 281
Query: 246 YAKLCENGHDSKDFS 260
++ + K
Sbjct: 282 LTRVAQVRAALKQRP 296
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} Length = 317 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 2e-39
Identities = 36/255 (14%), Positives = 81/255 (31%), Gaps = 33/255 (12%)
Query: 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQT 65
GV + +A A DVV++++ ++ V L + ID +++ P T
Sbjct: 75 GVEPLDDVAGIACA-DVVLSLVVGAATK-AVAASAAPHLSDE-----AVFIDLNSVGPDT 127
Query: 66 SRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLF 125
+ A++ ++ V V + G
Sbjct: 128 KALAAGAIAT----------GKGSFVEGAVMARVPPYAEKVPILVAGRRAVE---VAERL 174
Query: 126 LSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 184
++G N G G ++ K+ ++ + + EAL+ + G++ L + +
Sbjct: 175 NALGMNLEAVGETPGQASSLKMIRSVMIKGVEALLIEALSSAERAGVTERILDSVQETFP 234
Query: 185 ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQD 244
W + + E +R ++ A + + G++ P++ A +
Sbjct: 235 GLDWRDVADYYLSRTFE--HGAR----------RVTEMTEAAETIESFGLNAPMSRAACE 282
Query: 245 IYAKLCENGHDSKDF 259
A D
Sbjct: 283 TIAAAHAAMKDQGLS 297
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 Length = 264 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 2e-30
Identities = 31/197 (15%), Positives = 60/197 (30%), Gaps = 26/197 (13%)
Query: 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQT 65
V ET E + VVI+ + + + + +D + I P+T
Sbjct: 43 TVGVTETSEEDVYSCPVVISAVTPGVALGAARRAGRHV--------RGIYVDINNISPET 94
Query: 66 SRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLF 125
R S+ + +DA + G V A G + +
Sbjct: 95 VRMASSLIEKG------------GFVDAAIMGSVRRKGADIRIIASGRDAEEFMKLNR-- 140
Query: 126 LSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 184
G N G G+ +A K+ + + E LT LG+ + ++L +
Sbjct: 141 --YGLNIEVRGREPGDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEE-DVLEMLEYTE 197
Query: 185 ARCWSSDSYNPVPGVME 201
+ + + +
Sbjct: 198 GNDFRESAISRLKSSCI 214
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* Length = 215 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 3e-05
Identities = 15/142 (10%), Positives = 37/142 (26%), Gaps = 27/142 (19%)
Query: 12 TPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISA 71
E + +V+ + + L + + ++L+D S Q
Sbjct: 76 FQEEAVSSPEVIFVAVFREHYS--------SLCSLSDQLAGKILVDVSNPTEQEHLQHRE 127
Query: 72 AVSNCILKEKKDSWENPVMLDAPVSGGV----------LAAEAGTLTFMVGGSEDAYQAA 121
+ + + + V + + G +A +A
Sbjct: 128 SNA---------EYLASLFPTCTVVKAFNVISAWTLQAGPRDGNRQVPICGDQPEAKRAV 178
Query: 122 KPLFLSMGKNTIYCGGAGNGAA 143
+ L+MG + G +
Sbjct: 179 SEMALAMGFMPVDMGSLASAWE 200
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} Length = 358 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 2e-04
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Query: 91 LDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLF--LSMGKNTIYCGGAGNGAAAKICN 148
+D SGG+ E G M+GG + A + P+F L+ G
Sbjct: 137 VDVGTSGGIFGLERGY-CLMIGGEKQAVERLDPVFRTLAPGIGAAPRTPGREKREGTAEL 195
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} Length = 201 | Back alignment and structure |
|---|
Score = 38.9 bits (90), Expect = 7e-04
Identities = 21/132 (15%), Positives = 39/132 (29%), Gaps = 9/132 (6%)
Query: 12 TPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISA 71
E A SDV++ + + L + +S++ ++LID S S
Sbjct: 66 CYSEAASRSDVIVLAVHREHYDF--------LAELADSLKGRVLIDVSNNQKMNQYPESN 117
Query: 72 AVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKN 131
A L + + A +A F+ G A + ++G
Sbjct: 118 AEYLAQLVPGAHVVKAFNTISAWALQS-GTLDASRQVFVCGNDSKAKDRVMDIARTLGLT 176
Query: 132 TIYCGGAGNGAA 143
+ G
Sbjct: 177 PLDQGSLVAAKE 188
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 273 | |||
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 100.0 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 100.0 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 100.0 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 100.0 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 100.0 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 100.0 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 100.0 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 100.0 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 100.0 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 100.0 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 100.0 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 100.0 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 100.0 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 100.0 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 100.0 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 100.0 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 100.0 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 100.0 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 100.0 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.97 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.96 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 99.95 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 99.95 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.95 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 99.94 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 99.94 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.93 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 99.93 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 99.92 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 99.92 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 99.92 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 99.91 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 99.9 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 99.9 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 99.87 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 99.86 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 99.75 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 99.67 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 99.66 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 99.62 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 99.59 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 99.59 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 99.58 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 99.56 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 99.53 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 99.52 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 99.51 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 99.46 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 99.44 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 99.44 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 99.43 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 99.43 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 99.41 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 99.41 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 99.39 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 99.2 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 99.2 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 99.19 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 99.14 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 99.07 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 98.64 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 99.05 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 99.04 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 98.98 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 98.97 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 98.97 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 98.9 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 98.9 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 98.89 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 98.86 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 98.81 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 98.78 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 98.74 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 98.69 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 98.65 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 98.64 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 98.48 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 98.41 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 98.17 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 98.1 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 98.06 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 97.9 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 97.89 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 97.72 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 97.6 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.53 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.51 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.43 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 97.03 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 97.01 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 96.98 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 96.61 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 96.43 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 96.41 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 96.4 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 96.39 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 96.26 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 96.25 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 96.24 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 96.22 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 96.22 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 96.17 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 96.17 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 96.01 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 95.99 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 95.95 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 95.95 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 95.88 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 95.87 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 95.84 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 95.82 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 95.76 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 95.74 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 95.64 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 95.58 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 95.57 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 95.56 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 95.54 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 95.44 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 95.3 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 95.28 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 95.18 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 95.11 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 95.03 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 95.03 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 94.96 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 94.94 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 94.92 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 94.72 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 94.59 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 94.14 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 93.89 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 92.52 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 92.48 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 92.1 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 91.71 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 91.6 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 91.38 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 91.37 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 91.34 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 91.19 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 90.81 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 90.58 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 90.47 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 90.45 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 90.38 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 90.21 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 89.81 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 89.77 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 89.71 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 89.16 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 89.14 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 89.08 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 89.03 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 88.87 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 88.77 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 88.54 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 87.81 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 87.7 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 87.36 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 86.96 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 86.41 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 86.38 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 85.81 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 85.63 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 85.6 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 85.6 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 85.51 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 84.9 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 84.87 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 84.36 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 83.87 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 83.26 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 83.08 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 82.07 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 82.03 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 81.57 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 81.33 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 80.38 |
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-59 Score=413.22 Aligned_cols=257 Identities=43% Similarity=0.696 Sum_probs=243.6
Q ss_pred cccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhc
Q 024066 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEK 81 (273)
Q Consensus 2 l~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~ 81 (273)
|++.|+++++||+|++++||+||+|||+++++++|+++.+|+++++ .+|++|||+||++|+++++++++++++
T Consensus 42 l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~~~~~--~~g~iiId~sT~~p~~~~~~a~~~~~~----- 114 (300)
T 3obb_A 42 LVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGLLAHI--APGTLVLECSTIAPTSARKIHAAARER----- 114 (300)
T ss_dssp HHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSSSTTSC--CC-CEEEECSCCCHHHHHHHHHHHHTT-----
T ss_pred HHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhhhhhcC--CCCCEEEECCCCCHHHHHHHHHHHHHc-----
Confidence 5678999999999999999999999999999999999999999875 567999999999999999999999874
Q ss_pred cCCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHH
Q 024066 82 KDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSE 161 (273)
Q Consensus 82 ~g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~E 161 (273)
|+.|+||||+|++.+|++|+|++|+||++++|++++|+|+.|+++++|+|++|+|+.+||+||++.++++++++|
T Consensus 115 -----G~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~i~~~G~~G~g~~~Kl~~N~l~~~~~~a~aE 189 (300)
T 3obb_A 115 -----GLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNIFHAGPDGAGQVAKVCNNQLLAVLMIGTAE 189 (300)
T ss_dssp -----TCEEEECCEESCHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCEEEecCCCCCHHHHHhCCEEEEEeCCHHHHHHHHHHHHHhCCCEEEeCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHH
Q 024066 162 ALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQ 241 (273)
Q Consensus 162 a~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~~~~ 241 (273)
++.++++.|+|++.++++++.+++.||.++.+.|.+......+..++|+++|+++++.||++++++++++.|+|+|+++.
T Consensus 190 a~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~p~~~~~~~~~~~~~~~~~f~~~l~~KDl~l~~~~A~~~g~~~p~~~~ 269 (300)
T 3obb_A 190 AMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGGFMAQLMAKDLGLAQEAAQASASSTPMGSL 269 (300)
T ss_dssp HHHHHHHTTCCHHHHHHHHHTSTTCCHHHHHCCCSTTTSTTSGGGGTTCSSSBHHHHHHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHhCcccchHHHhhccccchhhhccccccCCccchHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 99999999999999999999999999999888887777666677899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCcHHHHHHHHhcCC
Q 024066 242 AQDIYAKLCENGHDSKDFSCVFQHYYGGK 270 (273)
Q Consensus 242 ~~~~~~~a~~~G~g~~d~sai~~~~~~~~ 270 (273)
++++|+++.++|+|++||++|+++|++..
T Consensus 270 a~~~~~~a~~~G~g~~D~sal~~~~e~~~ 298 (300)
T 3obb_A 270 ALSLYRLLLKQGYAERDFSVVQKLFDPTQ 298 (300)
T ss_dssp HHHHHHHHHHTTCTTSBGGGGHHHHCTTC
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHHHhc
Confidence 99999999999999999999999987643
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-53 Score=376.24 Aligned_cols=248 Identities=21% Similarity=0.305 Sum_probs=229.4
Q ss_pred CcccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhh
Q 024066 1 MFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKE 80 (273)
Q Consensus 1 ~l~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~ 80 (273)
+|++.|++.++|++|++++||+||+|||++.++++++.+ .+++.+ .++++|||+||++|++++++++++.++
T Consensus 43 ~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~--~~~~~~--~~~~iiid~sT~~p~~~~~~~~~~~~~---- 114 (297)
T 4gbj_A 43 PLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFSM--ELVEKL--GKDGVHVSMSTISPETSRQLAQVHEWY---- 114 (297)
T ss_dssp TTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSCH--HHHHHH--CTTCEEEECSCCCHHHHHHHHHHHHHT----
T ss_pred HHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHHH--HHHhhc--CCCeEEEECCCCChHHHHHHHHHHHhc----
Confidence 367889999999999999999999999999999998764 355553 466899999999999999999999874
Q ss_pred ccCCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHH
Q 024066 81 KKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGV 159 (273)
Q Consensus 81 ~~g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~-~g~a~~~Kl~~n~~~~~~~~~~ 159 (273)
|++|+|+||+|++..+..|++++|+||++++|++++|+|+.++++++|+|+ +|+|+.+||++|++.+++++++
T Consensus 115 ------g~~~ldapVsGg~~~a~~g~l~im~gG~~~~~~~~~~~l~~~g~~i~~~g~~~G~g~~~Kl~~N~~~~~~~~~~ 188 (297)
T 4gbj_A 115 ------GAHYVGAPIFARPEAVRAKVGNICLSGNAGAKERIKPIVENFVKGVFDFGDDPGAANVIKLAGNFMIACSLEMM 188 (297)
T ss_dssp ------TCEEEECCEECCHHHHHHTCCEEEEEECHHHHHHHHHHHHTTCSEEEECCSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ------CCceecCCcCCCccccccccceeecccchhHHHHHHHHHHHhhCCeEEecCCccHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999999999999999999999999999999999996 8999999999999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCC-CcchhhHHHHHHHHHHHHHHhCCCChH
Q 024066 160 SEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG-GFASKLMAKDLNLALASAKEVGVDCPL 238 (273)
Q Consensus 160 ~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~f~~~~~~KD~~~~~~~a~~~g~~~~~ 238 (273)
+|++.+++++|||+++++++++.+.++||+++.+.| ++..++|+| +|+++++.||++++++++++.|+|+|+
T Consensus 189 aEa~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~-------~~~~~~~~p~~f~~~l~~KDl~l~~~~A~~~g~~~p~ 261 (297)
T 4gbj_A 189 GEAFTMAEKNGISRQSIYEMLTSTLFAAPIFQNYGK-------LVASNTYEPVAFRFPLGLKDINLTLQTASDVNAPMPF 261 (297)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHTTTTCSHHHHHHHH-------HHHHTCCCSCSSBHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhhcccCchhhccCc-------cccCCCCCCccchhHHHHHHHHHHHHHHHHhCCCChH
Confidence 999999999999999999999999999998776543 355789987 899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCcHHHHHHHHhcC
Q 024066 239 TSQAQDIYAKLCENGHDSKDFSCVFQHYYGG 269 (273)
Q Consensus 239 ~~~~~~~~~~a~~~G~g~~d~sai~~~~~~~ 269 (273)
++.++++|+++.++|+|++||+++++.+++.
T Consensus 262 ~~~~~~~~~~a~~~G~g~~D~sal~~~~~~~ 292 (297)
T 4gbj_A 262 ADIIRNRFISGLAKGRENLDWGALALGASDD 292 (297)
T ss_dssp HHHHHHHHHHHHHTTCTTSBGGGGGHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999998754
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-44 Score=321.62 Aligned_cols=249 Identities=30% Similarity=0.410 Sum_probs=229.8
Q ss_pred ccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhcc
Q 024066 3 SDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 82 (273)
Q Consensus 3 ~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~ 82 (273)
.+.|++.++|+.|++++||+||+|||++.+++++++++.++++.+ .++++|||+||+.|.+++++.+.+.++
T Consensus 61 ~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l--~~g~~vv~~st~~~~~~~~~~~~~~~~------ 132 (310)
T 3doj_A 61 VEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVVFDKGGVLEQI--CEGKGYIDMSTVDAETSLKINEAITGK------ 132 (310)
T ss_dssp HHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGGC--CTTCEEEECSCCCHHHHHHHHHHHHHT------
T ss_pred HHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHHhCchhhhhcc--CCCCEEEECCCCCHHHHHHHHHHHHHc------
Confidence 456888999999999999999999999999999998777788764 467899999999999999999988763
Q ss_pred CCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHH
Q 024066 83 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEA 162 (273)
Q Consensus 83 g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~Ea 162 (273)
|++|+|+||+|++..+..|++++++||+++++++++++|+.++++++|+|++|.|+.+|+++|.+..+++++++|+
T Consensus 133 ----g~~~v~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~g~~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea 208 (310)
T 3doj_A 133 ----GGRFVEGPVSGSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMGSMMNAFSEG 208 (310)
T ss_dssp ----TCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHHHHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCEEEeCCCCCChhHHhcCCeEEEEcCCHHHHHHHHHHHHHhCCCEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHH
Q 024066 163 LTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQA 242 (273)
Q Consensus 163 ~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~~~~~ 242 (273)
+.++++.|++++++.++++.+.+.||.++.+.+ ++..++|.++|+++++.||++++++++++.|+++|+++.+
T Consensus 209 ~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~-------~~~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~~p~~~~~ 281 (310)
T 3doj_A 209 LVLADKSGLSSDTLLDILDLGAMTNPMFKGKGP-------SMNKSSYPPAFPLKHQQKDMRLALALGDENAVSMPVAAAA 281 (310)
T ss_dssp HHHHHHTTSCHHHHHHHHHHSTTCCHHHHHHHH-------HHHTTCCCCSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHhcccccHHHHHHhh-------hhhcCCCCCCccHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 999999999999999999998888887654422 3557899999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHhcCC
Q 024066 243 QDIYAKLCENGHDSKDFSCVFQHYYGGK 270 (273)
Q Consensus 243 ~~~~~~a~~~G~g~~d~sai~~~~~~~~ 270 (273)
.++|+.+.++|+|++||+++++.+++.+
T Consensus 282 ~~~~~~a~~~g~g~~d~~~~~~~~~~~~ 309 (310)
T 3doj_A 282 NEAFKKARSLGLGDLDFSAVIEAVKFSR 309 (310)
T ss_dssp HHHHHHHHHTTCTTSBGGGGHHHHHCCC
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHHhcC
Confidence 9999999999999999999999998754
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-44 Score=321.17 Aligned_cols=248 Identities=26% Similarity=0.407 Sum_probs=227.7
Q ss_pred cccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhc
Q 024066 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEK 81 (273)
Q Consensus 2 l~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~ 81 (273)
+.+.|++.++|+.|++++||+||+|||++.++++++.++ ++++.+ .++++|||+||++|.+++++.+.+.++
T Consensus 70 l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~-~~~~~l--~~~~~vi~~st~~~~~~~~~~~~~~~~----- 141 (320)
T 4dll_A 70 LAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFAQ-GVAAAM--KPGSLFLDMASITPREARDHAARLGAL----- 141 (320)
T ss_dssp HHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTTT-CHHHHC--CTTCEEEECSCCCHHHHHHHHHHHHHT-----
T ss_pred HHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcch-hHHhhC--CCCCEEEecCCCCHHHHHHHHHHHHHc-----
Confidence 345688899999999999999999999999999999865 677653 467899999999999999999998763
Q ss_pred cCCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHH
Q 024066 82 KDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSE 161 (273)
Q Consensus 82 ~g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~E 161 (273)
|++|+|+||+|++..+..|++++++||+++++++++++|+.+ ++++|+|++|.|+.+|+++|.+...++++++|
T Consensus 142 -----g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~-~~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~E 215 (320)
T 4dll_A 142 -----GIAHLDTPVSGGTVGAEQGTLVIMAGGKPADFERSLPLLKVF-GRATHVGPHGSGQLTKLANQMIVGITIGAVAE 215 (320)
T ss_dssp -----TCEEEECCEECHHHHHHHTCEEEEEESCHHHHHHHHHHHHHH-EEEEEEESTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCEEEeCCCcCCHhHHhcCCeeEEeCCCHHHHHHHHHHHHhc-CCEEEeCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999999999999999999999999999 88999999999999999999999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHH
Q 024066 162 ALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQ 241 (273)
Q Consensus 162 a~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~~~~ 241 (273)
++.++++.|+|+++++++++.+.+.||.++.+.+ ++..++|.++|+++++.||++++++++++.|+++|+++.
T Consensus 216 a~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~-------~~l~~~~~~gf~~~~~~KDl~~~~~~a~~~g~~~p~~~~ 288 (320)
T 4dll_A 216 ALLFATKGGADMAKVKEAITGGFADSRVLQLHGQ-------RMVERDFAPRARLSIQLKDMRNALATAQEIGFDAPITGL 288 (320)
T ss_dssp HHHHHHHTSCCHHHHHHHHTTSTTCBHHHHTHHH-------HHHTTCCCCSSBHHHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHcccccCHHHHHhhh-------hhccCCCCCcccHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 9999999999999999999999888888765432 356789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCcHHHHHHHHhcCC
Q 024066 242 AQDIYAKLCENGHDSKDFSCVFQHYYGGK 270 (273)
Q Consensus 242 ~~~~~~~a~~~G~g~~d~sai~~~~~~~~ 270 (273)
+.++|+++.+.|+|++||+++++++++..
T Consensus 289 ~~~~~~~a~~~g~g~~d~~~~~~~~~~~~ 317 (320)
T 4dll_A 289 FEQLYAEGVEHGLTDLDQSGLFVELASRN 317 (320)
T ss_dssp HHHHHHHHHTTTTTTSBGGGHHHHHHHC-
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHHHHHhc
Confidence 99999999999999999999999997654
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=311.68 Aligned_cols=246 Identities=30% Similarity=0.452 Sum_probs=226.9
Q ss_pred ccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhcc
Q 024066 3 SDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 82 (273)
Q Consensus 3 ~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~ 82 (273)
.+.|++.++|+.|++++||+||+|||++.++++++++..++.+.+ .++++|||+||++|.+++++.+.+.++
T Consensus 41 ~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l~~~l--~~g~~vv~~st~~~~~~~~~~~~~~~~------ 112 (287)
T 3pdu_A 41 VALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANGVLEGI--GGGRGYIDMSTVDDETSTAIGAAVTAR------ 112 (287)
T ss_dssp HHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGTC--CTTCEEEECSCCCHHHHHHHHHHHHHT------
T ss_pred HHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhhhhcc--cCCCEEEECCCCCHHHHHHHHHHHHHc------
Confidence 345888899999999999999999999999999998777787764 467899999999999999999988763
Q ss_pred CCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHH
Q 024066 83 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEA 162 (273)
Q Consensus 83 g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~Ea 162 (273)
|++|+|+|++|++..+..|++++++||+++.+++++++|+.++++++|+|++|.|+.+|+++|.+...++.+++|+
T Consensus 113 ----g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~Ea 188 (287)
T 3pdu_A 113 ----GGRFLEAPVSGTKKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCLHLGEVGQGARMKLVVNMIMGQMMTALGEG 188 (287)
T ss_dssp ----TCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHTHHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCEEEECCccCCHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCEEEcCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHH
Q 024066 163 LTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQA 242 (273)
Q Consensus 163 ~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~~~~~ 242 (273)
+.++++.|++++++.++++.+.+.||.++.+.+ ++..++|.++|+++++.||++++++++++.|+++|+++.+
T Consensus 189 ~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~-------~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~ 261 (287)
T 3pdu_A 189 MALGRNCGLDGGQLLEVLDAGAMANPMFKGKGQ-------MLLSGEFPTSFPLKHMQKDLRLAVELGDRLGQPLHGAATA 261 (287)
T ss_dssp HHHHHHTTCCHHHHHHHHHHSTTCCHHHHHHHH-------HHHHTCCCCSSBHHHHHHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHhccccChHHHhhcc-------ccccCCCCCCCcHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 999999999999999999999888887654432 3456899999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHh
Q 024066 243 QDIYAKLCENGHDSKDFSCVFQHYY 267 (273)
Q Consensus 243 ~~~~~~a~~~G~g~~d~sai~~~~~ 267 (273)
.++|+++.+.|+|++||++++++++
T Consensus 262 ~~~~~~a~~~g~~~~d~~~~~~~~~ 286 (287)
T 3pdu_A 262 NESFKRARAAGHADEDFAAVFRVLE 286 (287)
T ss_dssp HHHHHHHHHTTCTTSBGGGGHHHHC
T ss_pred HHHHHHHHhcCCCcCCHHHHHHHHh
Confidence 9999999999999999999999875
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-43 Score=310.94 Aligned_cols=246 Identities=31% Similarity=0.467 Sum_probs=226.6
Q ss_pred ccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhcc
Q 024066 3 SDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 82 (273)
Q Consensus 3 ~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~ 82 (273)
.+.|++.++|+.|++++||+||+|||++.++++++++..++.+.+ .++++|||+||++|.+++++.+.+.++
T Consensus 41 ~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l--~~~~~vi~~st~~~~~~~~~~~~~~~~------ 112 (287)
T 3pef_A 41 AALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGVLEGI--GEGRGYVDMSTVDPATSQRIGVAVVAK------ 112 (287)
T ss_dssp HHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHC--CTTCEEEECSCCCHHHHHHHHHHHHHT------
T ss_pred HHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchHhhcC--CCCCEEEeCCCCCHHHHHHHHHHHHHh------
Confidence 455888899999999999999999999999999997766787764 467899999999999999999988763
Q ss_pred CCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHH
Q 024066 83 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEA 162 (273)
Q Consensus 83 g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~Ea 162 (273)
|++|+|+||+|++..+..|++.+++||+++++++++++|+.++.+++|+|+.|.|+.+|+++|++...++.+++|+
T Consensus 113 ----g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~E~ 188 (287)
T 3pef_A 113 ----GGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMMACFCEG 188 (287)
T ss_dssp ----TCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHHHHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCEEEECCCcCCHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHH
Q 024066 163 LTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQA 242 (273)
Q Consensus 163 ~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~~~~~ 242 (273)
+.++++.|++++++.++++.+.+.||.++.+.+ ++..++|.++|+++++.||++++++++++.|+++|+++.+
T Consensus 189 ~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~-------~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~ 261 (287)
T 3pef_A 189 LALGEKAGLATDAILDVIGAGAMANPMFALKGG-------LIRDRNFAPAFPLKHMQKDLRLAVALGDRVGQPLVASAAA 261 (287)
T ss_dssp HHHHHHTTCCHHHHHHHHHHSTTCCHHHHHHHH-------HHHTTCCCCSSBHHHHHHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHhcccccHHHHHHhh-------hhhcCCCCCCCchHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 999999999999999999998888887665432 3557899999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHh
Q 024066 243 QDIYAKLCENGHDSKDFSCVFQHYY 267 (273)
Q Consensus 243 ~~~~~~a~~~G~g~~d~sai~~~~~ 267 (273)
.++|+++.++|+|++||++++++++
T Consensus 262 ~~~~~~~~~~g~~~~d~~~~~~~~~ 286 (287)
T 3pef_A 262 NELFKGARAAGFGDEDFSAIFKTYE 286 (287)
T ss_dssp HHHHHHHHHTTCTTSBGGGGGGGGC
T ss_pred HHHHHHHHHcCCCccCHHHHHHHHh
Confidence 9999999999999999999998765
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-43 Score=312.65 Aligned_cols=249 Identities=26% Similarity=0.389 Sum_probs=224.2
Q ss_pred ccCCCCC-CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhc
Q 024066 3 SDMGVPT-KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEK 81 (273)
Q Consensus 3 ~~~Ga~~-~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~ 81 (273)
.+.|+.. ++|+.|++++||+||+|||++.++++++++.+++.+.+ .++++|||+||+.|.+++++.+.+.++
T Consensus 47 ~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l--~~g~ivv~~st~~~~~~~~~~~~~~~~----- 119 (303)
T 3g0o_A 47 LAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGEDGVAHLM--KPGSAVMVSSTISSADAQEIAAALTAL----- 119 (303)
T ss_dssp HHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--CCCGGGS--CTTCEEEECSCCCHHHHHHHHHHHHTT-----
T ss_pred HHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhChhhHHhhC--CCCCEEEecCCCCHHHHHHHHHHHHHc-----
Confidence 4567877 88999999999999999999999999997766787764 467899999999999999999988753
Q ss_pred cCCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHH
Q 024066 82 KDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVS 160 (273)
Q Consensus 82 ~g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~-~g~a~~~Kl~~n~~~~~~~~~~~ 160 (273)
|+.|+|+||+|++..+..|++.+++||+++.+++++++|+.++++++|+|+ +|.|+.+|+++|++...++++++
T Consensus 120 -----g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~~~~~~~~g~a~~~Kl~~N~~~~~~~~~~~ 194 (303)
T 3g0o_A 120 -----NLNMLDAPVSGGAVKAAQGEMTVMASGSEAAFTRLKPVLDAVASNVYRISDTPGAGSTVKIIHQLLAGVHIAAAA 194 (303)
T ss_dssp -----TCEEEECCEESCHHHHHTTCEEEEEECCHHHHHHHHHHHHHHEEEEEEEESSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCeEEeCCCCCChhhhhcCCeEEEeCCCHHHHHHHHHHHHHHCCCEEECCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999999999999999999999999999998 99999999999999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHH
Q 024066 161 EALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTS 240 (273)
Q Consensus 161 Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~~~ 240 (273)
|++.++++.|++++++.++++.+.+.||.++.+.+ ++..++|+++|+++++.||++++++++++.|+++|+++
T Consensus 195 Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~-------~~~~~~~~~~~~~~~~~kD~~~~~~~a~~~g~~~p~~~ 267 (303)
T 3g0o_A 195 EAMALAARAGIPLDVMYDVVTHAAGNSWMFENRMQ-------HVVDGDYTPRSAVDIFVKDLGLVADTAKALRFPLPLAS 267 (303)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHHHH-------HHHTTCCCCSSBHHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHhcccCCHHHHhhhH-------HHhcCCCCCCCchHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 99999999999999999999998888887664432 24568899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCcHHHHHHHHhcCC
Q 024066 241 QAQDIYAKLCENGHDSKDFSCVFQHYYGGK 270 (273)
Q Consensus 241 ~~~~~~~~a~~~G~g~~d~sai~~~~~~~~ 270 (273)
.+.++|+++.+.|+|++||++++++++++.
T Consensus 268 ~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~ 297 (303)
T 3g0o_A 268 TALNMFTSASNAGYGKEDDSAVIKIFSGEG 297 (303)
T ss_dssp HHHHHHHHHHHTTTTTSBGGGGGGGC----
T ss_pred HHHHHHHHHHhcCCCccCHHHHHHHHHhcc
Confidence 999999999999999999999999887664
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-41 Score=303.16 Aligned_cols=243 Identities=13% Similarity=0.153 Sum_probs=213.9
Q ss_pred ccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhcc
Q 024066 3 SDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 82 (273)
Q Consensus 3 ~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~ 82 (273)
.+.|++.++|+.|++++||+||+|||++.++++++. .+++.. . .++++|||+||++|.+++++.+.+.++
T Consensus 49 ~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~-~~~l~~-~--~~g~ivid~st~~~~~~~~l~~~~~~~------ 118 (306)
T 3l6d_A 49 VAAGAHLCESVKAALSASPATIFVLLDNHATHEVLG-MPGVAR-A--LAHRTIVDYTTNAQDEGLALQGLVNQA------ 118 (306)
T ss_dssp HHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHT-STTHHH-H--TTTCEEEECCCCCTTHHHHHHHHHHHT------
T ss_pred HHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhc-ccchhh-c--cCCCEEEECCCCCHHHHHHHHHHHHHc------
Confidence 345888899999999999999999999999999985 234533 2 367899999999999999999998763
Q ss_pred CCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEe--CC-cChHHHHHHHHHHHHHHHHHHH
Q 024066 83 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYC--GG-AGNGAAAKICNNLTMAVSMLGV 159 (273)
Q Consensus 83 g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~--G~-~g~a~~~Kl~~n~~~~~~~~~~ 159 (273)
|++|+|+||+|+++.+..+.+++++||+++++++++|+|+.++.+++|+ |+ +|+|+.+| .+..++++++
T Consensus 119 ----g~~~vdapv~g~~~~~~~~~~~i~~gg~~~~~~~~~~ll~~lg~~~~~~~~g~~~g~g~~~k----~~~~~~~~~~ 190 (306)
T 3l6d_A 119 ----GGHYVKGMIVAYPRNVGHRESHSIHTGDREAFEQHRALLEGLAGHTVFLPWDEALAFATVLH----AHAFAAMVTF 190 (306)
T ss_dssp ----TCEEEEEEEESCGGGTTCTTCEEEEEECHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred ----CCeEEecccccCcccccCCceEEEEcCCHHHHHHHHHHHHHhcCCEEEecCCCCccHHHHHH----HHHHHHHHHH
Confidence 3899999999999998888889999999999999999999998899999 97 89999999 4566789999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhcC--CcccccccCCCCCCcccCCCCCCCCCCC-cchhhHHHHHHHHHHHHHHhCCCC
Q 024066 160 SEALTLGQSLGISASTLTKILNSSS--ARCWSSDSYNPVPGVMEGVPASRNYGGG-FASKLMAKDLNLALASAKEVGVDC 236 (273)
Q Consensus 160 ~Ea~~la~~~Gl~~~~~~~~l~~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~~-f~~~~~~KD~~~~~~~a~~~g~~~ 236 (273)
+|++.++++.|+|+++++++++.+. +.||+++.+.| ++.+++|+|+ |+++++.||++++++++++.|+++
T Consensus 191 ~Ea~~la~~~Gld~~~~~~~~~~~~~~~~s~~~~~~~~-------~~~~~~~~~~~~~~~~~~KDl~~~~~~a~~~g~~~ 263 (306)
T 3l6d_A 191 FEAVGAGDRFGLPVSKTARLLLETSRFFVADALEEAVR-------RLETQDFKGDQARLDVHADAFAHIAQSLHAQGVWT 263 (306)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHTCCCTTSSBHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcccHHHHHHHH-------HHhcCCCCCCcccHHHHHHHHHHHHHHHHHcCCCc
Confidence 9999999999999999999999885 67887665432 3557899885 799999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhcCC
Q 024066 237 PLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGK 270 (273)
Q Consensus 237 ~~~~~~~~~~~~a~~~G~g~~d~sai~~~~~~~~ 270 (273)
|+++.+.++|+++.+.|+|++||+++++++++..
T Consensus 264 p~~~~~~~~~~~a~~~g~g~~d~~a~~~~~~~~~ 297 (306)
T 3l6d_A 264 PVFDAVCQVVQRAAAMGYGDQDIAATTKSFAREQ 297 (306)
T ss_dssp HHHHHHHHHHHHHHHTTTTTSBGGGGGGGGC---
T ss_pred hHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhHH
Confidence 9999999999999999999999999999887654
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-39 Score=286.28 Aligned_cols=229 Identities=27% Similarity=0.340 Sum_probs=206.5
Q ss_pred ccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhcc
Q 024066 3 SDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 82 (273)
Q Consensus 3 ~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~ 82 (273)
.+.|++.++|++|+++ ||+||+|||++.++++++. ++.+.+ .++++|||+||+.|.+++++.+.+.++
T Consensus 55 ~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~~---~l~~~l--~~g~ivv~~st~~~~~~~~~~~~~~~~------ 122 (296)
T 3qha_A 55 AEAGATLADSVADVAA-ADLIHITVLDDAQVREVVG---ELAGHA--KPGTVIAIHSTISDTTAVELARDLKAR------ 122 (296)
T ss_dssp HHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHHH---HHHTTC--CTTCEEEECSCCCHHHHHHHHHHHGGG------
T ss_pred HHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHHH---HHHHhc--CCCCEEEEeCCCCHHHHHHHHHHHHHc------
Confidence 4568888999999999 9999999999999999884 466653 467899999999999999999998763
Q ss_pred CCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHH
Q 024066 83 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEA 162 (273)
Q Consensus 83 g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~Ea 162 (273)
|++|+|+||+|++..+..|++.+++||+++.+++++++|+.++.+++|+|++|.|+.+|+++|.+...++++++|+
T Consensus 123 ----g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~E~ 198 (296)
T 3qha_A 123 ----DIHIVDAPVSGGAAAAARGELATMVGADREVYERIKPAFKHWAAVVIHAGEPGAGTRMKLARNMLTFTSYAAACEA 198 (296)
T ss_dssp ----TCEEEECCEESCHHHHHHTCEEEEEECCHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCEEEeCCCcCCHHHHhcCCccEEecCCHHHHHHHHHHHHHHcCCeEEcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCHHHH------HHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcch-----hhHHHHHHHHHHHHHH
Q 024066 163 LTLGQSLGISASTL------TKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFAS-----KLMAKDLNLALASAKE 231 (273)
Q Consensus 163 ~~la~~~Gl~~~~~------~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~-----~~~~KD~~~~~~~a~~ 231 (273)
+.++++.|+|++++ +++++.+.+.||..+ . + ++..+ |.|+|++ +++.||++++++++++
T Consensus 199 ~~l~~~~G~d~~~~~~~~~~~~~i~~~~~~s~~~~--~--~-----~~~~~-~~~~f~~~~~~~~~~~KD~~~~~~~a~~ 268 (296)
T 3qha_A 199 MKLAEAAGLDLQALGRVVRHTDALTGGPGAIMVRD--N--M-----KDLEP-DNFLYQPFLHTRGLGEKDLSLALALGEA 268 (296)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHCCGGGGCCCS--S--C-----SCCCT-TSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHhhhcchHHHHhcCcccCHHhh--c--h-----hhhhc-CCCCCchhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999 999999888887643 2 2 24455 8899999 9999999999999999
Q ss_pred hCCCChHHHHHHHHHHHHHHCCCCCC
Q 024066 232 VGVDCPLTSQAQDIYAKLCENGHDSK 257 (273)
Q Consensus 232 ~g~~~~~~~~~~~~~~~a~~~G~g~~ 257 (273)
.|+++|+++.+.++|+.+.+.||+++
T Consensus 269 ~g~~~p~~~~~~~~~~~~~~~g~~~~ 294 (296)
T 3qha_A 269 VSVDLPLARLAYEGLAAGLGVPHKEK 294 (296)
T ss_dssp TTCCCHHHHHHHHHHHHHHTCCC---
T ss_pred cCCCChHHHHHHHHHHHHHhcCcccc
Confidence 99999999999999999999999654
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=267.44 Aligned_cols=256 Identities=52% Similarity=0.855 Sum_probs=225.7
Q ss_pred ccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhcc
Q 024066 3 SDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 82 (273)
Q Consensus 3 ~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~ 82 (273)
.+.|++.++++.|+++++|+||+|+|++.++++++....++++.+ .++++||++||++|++.+++.+.+.++
T Consensus 40 ~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~~~~l--~~~~~vv~~s~~~~~~~~~~~~~~~~~------ 111 (296)
T 2gf2_A 40 QDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKV--KKGSLLIDSSTIDPAVSKELAKEVEKM------ 111 (296)
T ss_dssp HTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSGGGTC--CTTCEEEECSCCCHHHHHHHHHHHHHT------
T ss_pred HHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhHHhcC--CCCCEEEECCCCCHHHHHHHHHHHHHc------
Confidence 345788888999999999999999999999999987655565543 356899999999999999998887652
Q ss_pred CCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHH
Q 024066 83 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEA 162 (273)
Q Consensus 83 g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~Ea 162 (273)
+..|+++|+++++..+..+++.+++||+++.+++++++|+.++.+++++|..|.|..+|+++|.+...++.++.|+
T Consensus 112 ----g~~~~~~p~~~g~~~a~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea 187 (296)
T 2gf2_A 112 ----GAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEA 187 (296)
T ss_dssp ----TCEEEECCEESHHHHHHHTCEEEEEESCGGGHHHHHHHHTTTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCEEEEcCCCCChhHHhcCcEEEEeCCCHHHHHHHHHHHHHHcCCeEEeCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999889899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHH
Q 024066 163 LTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQA 242 (273)
Q Consensus 163 ~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~~~~~ 242 (273)
+.++++.|++++++.+++..+.+.+|+.....+.+.++...+..++|.++|+++++.||++++++++++.|+++|+.+.+
T Consensus 188 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~~g~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~ 267 (296)
T 2gf2_A 188 MNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSLA 267 (296)
T ss_dssp HHHHHHTTCCHHHHHHHHHTSTTCBHHHHHSCSSTTTCSSSGGGGTTCSSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHhCcccCHHHHhcCCcccccccchhccCCCCCCchHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 99999999999999999998777777765554445554433456788889999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHhcCC
Q 024066 243 QDIYAKLCENGHDSKDFSCVFQHYYGGK 270 (273)
Q Consensus 243 ~~~~~~a~~~G~g~~d~sai~~~~~~~~ 270 (273)
.++|+.+.+.|+|++||+++++.+++.+
T Consensus 268 ~~~~~~~~~~g~~~~d~~~~~~~~~~~~ 295 (296)
T 2gf2_A 268 HQIYRMMCAKGYSKKDFSSVFQFLREEE 295 (296)
T ss_dssp HHHHHHHHTTTCTTSBGGGHHHHHSCCC
T ss_pred HHHHHHHHHcCCCccCHHHHHHHHHhcc
Confidence 9999999999999999999999887654
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-35 Score=259.96 Aligned_cols=246 Identities=35% Similarity=0.517 Sum_probs=217.8
Q ss_pred cCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccC
Q 024066 4 DMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKD 83 (273)
Q Consensus 4 ~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g 83 (273)
+.|++...++.++++++|+||+|+|++.++++++++..++.+.+ .++++||++||..|.+.+++.+.+.++
T Consensus 46 ~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l~~~l--~~~~~vv~~s~~~~~~~~~l~~~~~~~------- 116 (299)
T 1vpd_A 46 AAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGA--KPGTVLIDMSSIAPLASREISDALKAK------- 116 (299)
T ss_dssp HTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHC--CTTCEEEECSCCCHHHHHHHHHHHHTT-------
T ss_pred HCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcchHhhcC--CCCCEEEECCCCCHHHHHHHHHHHHHc-------
Confidence 34777888999999999999999999999999986544565543 456899999999999999999988653
Q ss_pred CCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHH
Q 024066 84 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEAL 163 (273)
Q Consensus 84 ~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~Ea~ 163 (273)
|+.|+++|++++++.+..+.+.+++||+++.+++++++|+.++.+++++++.|.+..+|+++|.+....+.++.|++
T Consensus 117 ---g~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~Ea~ 193 (299)
T 1vpd_A 117 ---GVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEAL 193 (299)
T ss_dssp ---TCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHTTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCeEEEecCCCCHhHHhcCCEEEEeCCCHHHHHHHHHHHHHHcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHH
Q 024066 164 TLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQ 243 (273)
Q Consensus 164 ~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~~~~~~ 243 (273)
.++++.|++++++.+++..+...+|.+.... + .+..++|.++|+++.+.||++.+++++++.|+++|+.+.+.
T Consensus 194 ~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~--~-----~~l~~~~~~g~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~ 266 (299)
T 1vpd_A 194 TLATKAGVNPDLVYQAIRGGLAGSTVLDAKA--P-----MVMDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVM 266 (299)
T ss_dssp HHHHHTTCCHHHHHHHHTTSTTCCHHHHHHH--H-----HHHTTCCCCSSBHHHHHHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHccCCCCHHHHHhh--h-----HhhcCCCCCCCChHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 9999999999999999988776666543221 1 23456788899999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHhc
Q 024066 244 DIYAKLCENGHDSKDFSCVFQHYYG 268 (273)
Q Consensus 244 ~~~~~a~~~G~g~~d~sai~~~~~~ 268 (273)
++|+++.+.|+|++||+++++.+++
T Consensus 267 ~~~~~~~~~g~~~~d~~~~~~~~~~ 291 (299)
T 1vpd_A 267 EMMQALRADGHGNDDHSALACYYEK 291 (299)
T ss_dssp HHHHHHHHTTCTTSBGGGHHHHHHH
T ss_pred HHHHHHHhcCCCccCHHHHHHHHHH
Confidence 9999999999999999999998864
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=270.26 Aligned_cols=231 Identities=14% Similarity=0.230 Sum_probs=196.9
Q ss_pred CCCCCCC-CHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccC
Q 024066 5 MGVPTKE-TPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKD 83 (273)
Q Consensus 5 ~Ga~~~~-s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g 83 (273)
.|+ ++ |+.|++++||+||+|||++..++.+ . ++.+.+ .++++|||+||+.|.+++++++.+.++
T Consensus 74 ~g~--~~~s~~e~~~~aDvVi~avp~~~~~~~~-~---~i~~~l--~~~~ivv~~st~~p~~~~~~~~~l~~~------- 138 (317)
T 4ezb_A 74 LGV--EPLDDVAGIACADVVLSLVVGAATKAVA-A---SAAPHL--SDEAVFIDLNSVGPDTKALAAGAIATG------- 138 (317)
T ss_dssp TTC--EEESSGGGGGGCSEEEECCCGGGHHHHH-H---HHGGGC--CTTCEEEECCSCCHHHHHHHHHHHHTS-------
T ss_pred CCC--CCCCHHHHHhcCCEEEEecCCHHHHHHH-H---HHHhhc--CCCCEEEECCCCCHHHHHHHHHHHHHc-------
Confidence 466 66 8999999999999999999887654 2 466553 457899999999999999999998763
Q ss_pred CCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHH
Q 024066 84 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEA 162 (273)
Q Consensus 84 ~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~-~g~a~~~Kl~~n~~~~~~~~~~~Ea 162 (273)
|+.|+|+||+|+ ..+..+++++++||+++ ++++++|+.++++++|+|+ +|+|+.+|+++|++..+++++++|+
T Consensus 139 ---g~~~~d~pv~g~-~~a~~g~l~i~vgg~~~--~~~~~ll~~~g~~v~~~g~~~g~a~~~Kl~~N~~~~~~~~~~~E~ 212 (317)
T 4ezb_A 139 ---KGSFVEGAVMAR-VPPYAEKVPILVAGRRA--VEVAERLNALGMNLEAVGETPGQASSLKMIRSVMIKGVEALLIEA 212 (317)
T ss_dssp ---SCEEEEEEECSC-STTTGGGSEEEEESTTH--HHHHHHHHTTTCEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCeEEeccCCCC-chhhcCCEEEEEeCChH--HHHHHHHHHhCCCeEEeCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999995 56778899999999987 9999999999999999998 9999999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHhhcC-CcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHH
Q 024066 163 LTLGQSLGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQ 241 (273)
Q Consensus 163 ~~la~~~Gl~~~~~~~~l~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~~~~ 241 (273)
+.++++.|+|++ +++.+..+. +.+|. .+. .++.+++|.++|+ +.||++++++++++.|+++|+++.
T Consensus 213 ~~la~~~Gid~~-~~~~l~~~~~~~~~~--~~~-------~~~~~~~~~~g~~---~~KDl~~~~~~a~~~g~~~pl~~~ 279 (317)
T 4ezb_A 213 LSSAERAGVTER-ILDSVQETFPGLDWR--DVA-------DYYLSRTFEHGAR---RVTEMTEAAETIESFGLNAPMSRA 279 (317)
T ss_dssp HHHHHHTTCHHH-HHHHHHHHSTTSCHH--HHH-------HHHHHHHHHHHHH---HHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred HHHHHHcCCCHH-HHHHHHhcCccccHH--Hhh-------hhhhcCCCCCCcc---hHHHHHHHHHHHHHcCCCChHHHH
Confidence 999999999995 677777664 33331 111 1244677877776 499999999999999999999999
Q ss_pred HHHH----HHHHHHCCCC-CCcHHHHHHHHhcC
Q 024066 242 AQDI----YAKLCENGHD-SKDFSCVFQHYYGG 269 (273)
Q Consensus 242 ~~~~----~~~a~~~G~g-~~d~sai~~~~~~~ 269 (273)
+.++ |+.+.+.|++ ++||+++++.++..
T Consensus 280 ~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~ 312 (317)
T 4ezb_A 280 ACETIAAAHAAMKDQGLSVNDGYRGFVPVLARR 312 (317)
T ss_dssp HHHHHHHHHHHHTTSSCCTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHhh
Confidence 9999 8888889997 99999999987643
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=254.83 Aligned_cols=246 Identities=32% Similarity=0.506 Sum_probs=218.1
Q ss_pred cCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccC
Q 024066 4 DMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKD 83 (273)
Q Consensus 4 ~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g 83 (273)
+.|++.++++.|+++++|+||+|+|++.++++++.+.+++.+.+ .++++||++||..|.+.+++.+.+.++
T Consensus 43 ~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l~~~l--~~~~~vv~~s~~~~~~~~~l~~~~~~~------- 113 (295)
T 1yb4_A 43 SLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHGCAKTS--LQGKTIVDMSSISPIETKRFAQRVNEM------- 113 (295)
T ss_dssp TTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTSSTTSC--CTTEEEEECSCCCHHHHHHHHHHHHTT-------
T ss_pred HcCCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchhHhhcC--CCCCEEEECCCCCHHHHHHHHHHHHHc-------
Confidence 45788889999999999999999999999999997544566553 457899999999999999999988653
Q ss_pred CCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHH
Q 024066 84 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEAL 163 (273)
Q Consensus 84 ~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~Ea~ 163 (273)
+++|+++|+++++..+..|.+.+++||+++.+++++++|+.++.+++++|+.|.+..+|+++|.+...++.++.|++
T Consensus 114 ---g~~~~~~p~~~~~~~a~~g~~~~~~~~~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~E~~ 190 (295)
T 1yb4_A 114 ---GADYLDAPVSGGEIGAREGTLSIMVGGEQKVFDRVKPLFDILGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEAL 190 (295)
T ss_dssp ---TEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCeEEEccCCCCHHHHHcCCeEEEECCCHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999888899899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHH
Q 024066 164 TLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQ 243 (273)
Q Consensus 164 ~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~~~~~~ 243 (273)
.++++.|++++++.+++..+...+|.+.... ..+..++|+++|+.+.+.||++++++++++.|+++|+.+++.
T Consensus 191 ~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~-------~~~~~~~~~~g~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~ 263 (295)
T 1yb4_A 191 VFASKAGADPVRVRQALMGGFASSRILEVHG-------ERMINRTFEPGFKIALHQKDLNLALQSAKALALNLPNTATCQ 263 (295)
T ss_dssp HHHHHTTCCHHHHHHHHTSSSSCBHHHHHHH-------HHHHTTCCCCSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHcCCCCCHHHHHhh-------HHHhcCCCCCCCchHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 9999999999999999988776665533211 123457888999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHhc
Q 024066 244 DIYAKLCENGHDSKDFSCVFQHYYG 268 (273)
Q Consensus 244 ~~~~~a~~~G~g~~d~sai~~~~~~ 268 (273)
+.|+++.+.|+|++||+++++.+++
T Consensus 264 ~~~~~~~~~g~~~~d~~~~~~~~~~ 288 (295)
T 1yb4_A 264 ELFNTCAANGGSQLDHSAMVQALEL 288 (295)
T ss_dssp HHHHHHHHTTCTTSBGGGGHHHHHH
T ss_pred HHHHHHHHcCCCccCHHHHHHHHHH
Confidence 9999999999999999999998864
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-34 Score=253.18 Aligned_cols=247 Identities=35% Similarity=0.536 Sum_probs=217.8
Q ss_pred cCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccC
Q 024066 4 DMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKD 83 (273)
Q Consensus 4 ~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g 83 (273)
+.|++.++++.|+++++|+||+|+|++.++++++.+.+++.+.+ .++++||++||..|.+.+++.+.+.++
T Consensus 45 ~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l~~~l--~~~~~vv~~~~~~~~~~~~l~~~~~~~------- 115 (301)
T 3cky_A 45 AQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGGVLSAC--KAGTVIVDMSSVSPSSTLKMAKVAAEK------- 115 (301)
T ss_dssp TTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHS--CTTCEEEECCCCCHHHHHHHHHHHHHT-------
T ss_pred HCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcchHhhcC--CCCCEEEECCCCCHHHHHHHHHHHHHc-------
Confidence 44777888999999999999999999999999987544565543 456899999999999999999988653
Q ss_pred CCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHH
Q 024066 84 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEAL 163 (273)
Q Consensus 84 ~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~Ea~ 163 (273)
+++|+++|+++++..+..|.+++++||+++.+++++++|+.++.+++++|+.|.+..+|+++|.+....+.++.|++
T Consensus 116 ---g~~~~~~p~~~~~~~a~~g~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~~~~g~~~~~Kl~~N~~~~~~~~~~~Ea~ 192 (301)
T 3cky_A 116 ---GIDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIYHVGDTGAGDAVKIVNNLLLGCNMASLAEAL 192 (301)
T ss_dssp ---TCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCeEEEccCCCCHHHHHcCCeEEEECCCHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999998888899899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHH
Q 024066 164 TLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQ 243 (273)
Q Consensus 164 ~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~~~~~~ 243 (273)
.++++.|++++++.+++..+...+|.+....+. .+..++|+++|+++.+.||++.+++++++.|+++|+.+.+.
T Consensus 193 ~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~~g~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~ 266 (301)
T 3cky_A 193 VLGVKCGLKPETMQEIIGKSSGRSYAMEAKMEK------FIMSGDFAGGFAMDLQHKDLGLALEAGKEGNVPLPMTAMAT 266 (301)
T ss_dssp HHHHHTTCCHHHHHHHHHTSTTCBHHHHHHCCC------CCCTCCCSSSSBHHHHHHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHcCCCCCHHHHHhhhh------hhhcCCCCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 999999999999999999877666654322210 13467888899999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHhc
Q 024066 244 DIYAKLCENGHDSKDFSCVFQHYYG 268 (273)
Q Consensus 244 ~~~~~a~~~G~g~~d~sai~~~~~~ 268 (273)
++|+++.+.|+|++||+++++.+++
T Consensus 267 ~~~~~~~~~g~~~~d~~~~~~~~~~ 291 (301)
T 3cky_A 267 QIFEGGRAMGLGREDMSAVIKVWEQ 291 (301)
T ss_dssp HHHHHHHHTTCTTSBGGGGHHHHHH
T ss_pred HHHHHHHhcCCCccCHHHHHHHHHH
Confidence 9999999999999999999998864
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-35 Score=263.10 Aligned_cols=225 Identities=18% Similarity=0.200 Sum_probs=192.3
Q ss_pred ccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhcc
Q 024066 3 SDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 82 (273)
Q Consensus 3 ~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~ 82 (273)
.+.|++.++|+.|++++||+||+|||++..++ ++. ++.+.+ .++++|||+||+.|.+++++.+.+.++ ..
T Consensus 67 ~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~-~~~---~l~~~l--~~~~ivvd~st~~~~~~~~~~~~~~~~----~~ 136 (312)
T 3qsg_A 67 EELGVSCKASVAEVAGECDVIFSLVTAQAALE-VAQ---QAGPHL--CEGALYADFTSCSPAVKRAIGDVISRH----RP 136 (312)
T ss_dssp HHTTCEECSCHHHHHHHCSEEEECSCTTTHHH-HHH---HHGGGC--CTTCEEEECCCCCHHHHHHHHHHHHHH----CT
T ss_pred HHCCCEEeCCHHHHHhcCCEEEEecCchhHHH-HHH---hhHhhc--CCCCEEEEcCCCCHHHHHHHHHHHHhh----cC
Confidence 45688899999999999999999999998765 443 465553 456899999999999999999988763 01
Q ss_pred CCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHH
Q 024066 83 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSE 161 (273)
Q Consensus 83 g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~-~g~a~~~Kl~~n~~~~~~~~~~~E 161 (273)
|++|+|+||+|+++.+ .|++++++||+++ ++++++|+.++.+++|+|+ +|+|+.+|+++|++..+++++++|
T Consensus 137 ----g~~~vd~pv~g~~~~~-~g~l~i~vgg~~~--~~~~~ll~~~g~~~~~~g~~~g~a~~~Kl~~n~~~~~~~~~~~E 209 (312)
T 3qsg_A 137 ----SAQYAAVAVMSAVKPH-GHRVPLVVDGDGA--RRFQAAFTLYGCRIEVLDGEVGGAALLKMCRSAVLKGLEALFLE 209 (312)
T ss_dssp ----TCEEEEEEECSCSTTT-GGGSEEEEESTTH--HHHHHHHHTTTCEEEECCSSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCeEEeccccCCchhh-cCCEEEEecCChH--HHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2799999999976654 7899999999988 9999999999999999998 999999999999999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHH
Q 024066 162 ALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQ 241 (273)
Q Consensus 162 a~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~~~~ 241 (273)
++.++++.|+|+ ++++.++.+.+ +|.++.+.+ ++.+++|.++|++ .||++++++++++.|+++|+++.
T Consensus 210 a~~la~~~Gld~-~~~~~l~~~~~-~~~~~~~~~-------~~~~~~~~~g~~~---~KDl~~~~~~a~~~g~~~pl~~~ 277 (312)
T 3qsg_A 210 ALAAAEKMGLAD-RVLASLDASFP-EHHLRDLAL-------YLVERNLEHADRR---AHELGEVAATLCSVGVEPLVAEA 277 (312)
T ss_dssp HHHHHHTTTCHH-HHHHHHHHHSG-GGTHHHHHH-------HHHHHHHHHHHHH---HHHHHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHcCCCH-HHHHHHHhcCC-chhHHHhhh-------HhhcCCCCcccch---HHHHHHHHHHHHHcCCCcHHHHH
Confidence 999999999999 58899988753 443332221 3456788888875 79999999999999999999999
Q ss_pred HHHHHHHHHHCCCCC
Q 024066 242 AQDIYAKLCENGHDS 256 (273)
Q Consensus 242 ~~~~~~~a~~~G~g~ 256 (273)
+.++|+++.+.|+++
T Consensus 278 ~~~~~~~~~~~g~~~ 292 (312)
T 3qsg_A 278 GYRRLTRVAQVRAAL 292 (312)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCcc
Confidence 999999999998876
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-34 Score=253.22 Aligned_cols=245 Identities=28% Similarity=0.419 Sum_probs=216.0
Q ss_pred cCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccC
Q 024066 4 DMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKD 83 (273)
Q Consensus 4 ~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g 83 (273)
+.|++..+++.++++++|+||+|+|++.++++++....++++.+ .++++||++||++|.+.+++.+.+.++
T Consensus 71 ~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~~~~~l--~~~~~vv~~s~~~~~~~~~l~~~~~~~------- 141 (316)
T 2uyy_A 71 QEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGI--RPGKCYVDMSTVDADTVTELAQVIVSR------- 141 (316)
T ss_dssp HTTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGGC--CTTCEEEECSCCCHHHHHHHHHHHHHT-------
T ss_pred HcCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchhHhhcC--CCCCEEEECCCCCHHHHHHHHHHHHHc-------
Confidence 35777788999999999999999999999999987655555553 456899999999999999999988642
Q ss_pred CCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHH
Q 024066 84 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEAL 163 (273)
Q Consensus 84 ~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~Ea~ 163 (273)
+..|+++|++|++..+..|.+.++++|+++.+++++++|+.++.+++++|++|.+...|+++|.+....+..+.|++
T Consensus 142 ---~~~~v~~p~~g~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~~~~~~~~~~K~~~n~~~~~~~~~~~Ea~ 218 (316)
T 2uyy_A 142 ---GGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGL 218 (316)
T ss_dssp ---TCEEEECCEESCHHHHHHTCEEEEEEECHHHHHHTHHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCEEEEcCccCChhHHhhCCEEEEeCCCHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHH
Q 024066 164 TLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQ 243 (273)
Q Consensus 164 ~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~~~~~~ 243 (273)
.++++.|++++++.+++..+...++.+.... + .+..++|+++|+++.+.||++++++++++.|+++|+.+++.
T Consensus 219 ~la~~~G~~~~~~~~~~~~~~~~s~~~~~~~--~-----~~l~~~~~~g~~~~~~~kd~~~~~~~a~~~gv~~p~~~~v~ 291 (316)
T 2uyy_A 219 TLAQVTGQSQQTLLDILNQGQLASIFLDQKC--Q-----NILQGNFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAAN 291 (316)
T ss_dssp HHHHHTTCCHHHHHHHHHHSTTCCHHHHHHH--H-----HHHHTCCCCSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHcCCCCCHHHHHhh--H-----HhhcCCCCCCCcHHHHHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 9999999999999999998776666543221 1 13356788899999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHh
Q 024066 244 DIYAKLCENGHDSKDFSCVFQHYY 267 (273)
Q Consensus 244 ~~~~~a~~~G~g~~d~sai~~~~~ 267 (273)
++|+++.+.|+|++||+++++.++
T Consensus 292 ~~~~~a~~~g~g~~d~~~~~~~~~ 315 (316)
T 2uyy_A 292 EVYKRAKALDQSDNDMSAVYRAYI 315 (316)
T ss_dssp HHHHHHHHTTCTTSBGGGGGGGTC
T ss_pred HHHHHHHhcCCCccCHHHHHHHHh
Confidence 999999999999999999988653
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-33 Score=250.84 Aligned_cols=235 Identities=19% Similarity=0.281 Sum_probs=193.8
Q ss_pred cccCCCCCCCCHHHHHhcC---CEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchh
Q 024066 2 FSDMGVPTKETPFEVAEAS---DVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCIL 78 (273)
Q Consensus 2 l~~~Ga~~~~s~~e~~~~a---dvvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~ 78 (273)
+.+.|++.++|++|+++++ |+||+|||++ ++++++. ++.+.+ .++++|||+||+.|.+++++++.+.++
T Consensus 61 l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~-~v~~vl~---~l~~~l--~~g~iiId~st~~~~~~~~~~~~l~~~-- 132 (358)
T 4e21_A 61 LEREGIAGARSIEEFCAKLVKPRVVWLMVPAA-VVDSMLQ---RMTPLL--AANDIVIDGGNSHYQDDIRRADQMRAQ-- 132 (358)
T ss_dssp HHTTTCBCCSSHHHHHHHSCSSCEEEECSCGG-GHHHHHH---HHGGGC--CTTCEEEECSSCCHHHHHHHHHHHHTT--
T ss_pred HHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHH-HHHHHHH---HHHhhC--CCCCEEEeCCCCChHHHHHHHHHHHHC--
Confidence 3456899999999999999 9999999999 8898885 466653 467899999999999999999998763
Q ss_pred hhccCCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhc--------------------CCeEEeCCc
Q 024066 79 KEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMG--------------------KNTIYCGGA 138 (273)
Q Consensus 79 ~~~~g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~--------------------~~i~~~G~~ 138 (273)
|+.|+|+||+|++..+..|+ .+|+||+++++++++|+|+.++ ++++|+|+.
T Consensus 133 --------g~~~vdapVsGg~~~a~~G~-~im~GG~~~a~~~~~~ll~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 203 (358)
T 4e21_A 133 --------GITYVDVGTSGGIFGLERGY-CLMIGGEKQAVERLDPVFRTLAPGIGAAPRTPGREKREGTAELGYLHCGPS 203 (358)
T ss_dssp --------TCEEEEEEEECGGGHHHHCC-EEEEESCHHHHHHTHHHHHHHSCCGGGSCCCTTGGGCCSSGGGTEEEEEST
T ss_pred --------CCEEEeCCCCCCHHHHhcCC-eeeecCCHHHHHHHHHHHHHhccccccCcccccccccccccccceEEECCc
Confidence 38999999999999999999 9999999999999999999999 579999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------------------------CCCHHHHHHHHhhcC-CcccccccC
Q 024066 139 GNGAAAKICNNLTMAVSMLGVSEALTLGQSL------------------------GISASTLTKILNSSS-ARCWSSDSY 193 (273)
Q Consensus 139 g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~------------------------Gl~~~~~~~~l~~~~-~~s~~~~~~ 193 (273)
|+|+.+|+++|.+..+.+++++|++.++++. |+|.++++++++.++ .+||+++..
T Consensus 204 G~g~~~Kl~~n~l~~~~i~~~aE~~~la~~a~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~g~~~~s~~l~~~ 283 (358)
T 4e21_A 204 GAGHFVKMVHNGIEYGLMAAYAEGLNILHHANAGKEGQGADAETAPLRNPDFYRYDLDLADITEVWRRGSVISSWLLDLS 283 (358)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC--------------CGGGCCCCCCHHHHHHHHTTTSTTCBHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchhcccCCCHHHHHHHHhCccHHHHHHHHHH
Confidence 9999999999999999999999999999998 899999999999886 789987653
Q ss_pred CCCCCcccCCCCCCCCCCCc-chhhHHHHH---HHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHH-HHHHHh
Q 024066 194 NPVPGVMEGVPASRNYGGGF-ASKLMAKDL---NLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSC-VFQHYY 267 (273)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~f-~~~~~~KD~---~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~G~g~~d~sa-i~~~~~ 267 (273)
.+ .+. ++ |.+ .+....||. +++++.|.+.|+|+|++..++ |.+... .++.+++. +++.++
T Consensus 284 ~~---~~~-----~~--p~~~~~~~~~~d~g~~r~~~~~A~~~gvp~p~~~~al--~~~~~s--~~~~~~~~~l~~a~r 348 (358)
T 4e21_A 284 AT---ALL-----DS--PDLQEFQGRVSDSGEGRWTVAAAIDEGVPAHVLSSAL--YERFSS--RGEDDFANRLLSAMR 348 (358)
T ss_dssp HH---HHH-----HC--TTCTTC--CCCCCSHHHHHHHHHHHHTCCCHHHHHHH--HHHHHH--TTTTHHHHHHHHHHC
T ss_pred HH---HHh-----hC--CChHHHHHHHHhcCcHHHHHHHHHHcCCChHHHHHHH--HHHHHH--CCCcccHHHHHHHHH
Confidence 21 111 12 222 123333443 889999999999999999764 444444 35667653 776554
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=241.32 Aligned_cols=240 Identities=28% Similarity=0.397 Sum_probs=208.7
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCC
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 85 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~ 85 (273)
|++.++ +.++++++|+||+|+|++.++++++. .+.+.+ .++++||++||..|.+.+++.+.+.++
T Consensus 43 g~~~~~-~~~~~~~~D~vi~~v~~~~~~~~v~~---~l~~~l--~~~~~vv~~s~~~~~~~~~l~~~~~~~--------- 107 (289)
T 2cvz_A 43 FGSEAV-PLERVAEARVIFTCLPTTREVYEVAE---ALYPYL--REGTYWVDATSGEPEASRRLAERLREK--------- 107 (289)
T ss_dssp HCCEEC-CGGGGGGCSEEEECCSSHHHHHHHHH---HHTTTC--CTTEEEEECSCCCHHHHHHHHHHHHTT---------
T ss_pred CCcccC-HHHHHhCCCEEEEeCCChHHHHHHHH---HHHhhC--CCCCEEEECCCCCHHHHHHHHHHHHHc---------
Confidence 555555 77888899999999999988888874 344432 456899999999999999999988652
Q ss_pred CCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024066 86 ENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTL 165 (273)
Q Consensus 86 ~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l 165 (273)
++.|+++|+++++..+..|.+.+++||+++.+++++++| .++.+++++++.+.+..+|+++|.+...++.++.|++.+
T Consensus 108 -g~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ll-~~g~~~~~~~~~~~~~~~k~~~n~~~~~~~~~~~Ea~~l 185 (289)
T 2cvz_A 108 -GVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFL-AYAKKVVHVGPVGAGHAVKAINNALLAVNLWAAGEGLLA 185 (289)
T ss_dssp -TEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHGGGC-TTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCEEEEecCCCChhHHhhCCeEEEECCCHHHHHHHHHHH-hhcCCeEEcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999998999999999999999999 999988999999999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 024066 166 GQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDI 245 (273)
Q Consensus 166 a~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~~~~~~~~ 245 (273)
+++.|++++++.+++..+...+|++.... +. .+..++|+++|+++.+.||++.+++++++.|+++|+.+++.+.
T Consensus 186 ~~~~G~~~~~~~~~~~~~~~~s~~~~~~~--~~----~~l~~~~~~g~~~~~~~kd~~~~~~~a~~~gv~~p~~~~v~~~ 259 (289)
T 2cvz_A 186 LVKQGVSAEKALEVINASSGRSNATENLI--PQ----RVLTRAFPKTFALGLLVKDLGIAMGVLDGEKAPSPLLRLAREV 259 (289)
T ss_dssp HHHTTCCHHHHHHHHTTSTTCBHHHHHTH--HH----HTTTSCCCCSSBHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred HHHcCcCHHHHHHHHHccCCCCHHHHHhc--cc----hhhcCCCCCCcChHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 99999999999999988776665543221 10 1345788889999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCcHHHHHHHHhc
Q 024066 246 YAKLCENGHDSKDFSCVFQHYYG 268 (273)
Q Consensus 246 ~~~a~~~G~g~~d~sai~~~~~~ 268 (273)
|+++.+.|+|++||+++++.+++
T Consensus 260 ~~~a~~~g~~~~d~~~~~~~~~~ 282 (289)
T 2cvz_A 260 YEMAKRELGPDADHVEALRLLER 282 (289)
T ss_dssp HHHHHHHHCTTSBGGGGHHHHHH
T ss_pred HHHHHHcCCCccCHHHHHHHHHH
Confidence 99999999999999999998864
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-31 Score=247.42 Aligned_cols=218 Identities=17% Similarity=0.222 Sum_probs=183.2
Q ss_pred CCCCHHHHHhc---CCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCC
Q 024066 9 TKETPFEVAEA---SDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 85 (273)
Q Consensus 9 ~~~s~~e~~~~---advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~ 85 (273)
.+.|++|+++. +|+||+|||++.++++++. ++.+.+ .++++|||+||+.|.+++++.+.+.++
T Consensus 55 ~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~vl~---~l~~~L--~~g~iIId~st~~~~~t~~~~~~l~~~--------- 120 (484)
T 4gwg_A 55 GAQSLKEMVSKLKKPRRIILLVKAGQAVDDFIE---KLVPLL--DTGDIIIDGGNSEYRDTTRRCRDLKAK--------- 120 (484)
T ss_dssp ECSSHHHHHHTBCSSCEEEECSCSSHHHHHHHH---HHGGGC--CTTCEEEECSCCCHHHHHHHHHHHHHT---------
T ss_pred ccCCHHHHHhhccCCCEEEEecCChHHHHHHHH---HHHHhc--CCCCEEEEcCCCCchHHHHHHHHHHhh---------
Confidence 36899999984 9999999999999999985 466653 467899999999999999999988763
Q ss_pred CCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCe-------EEeCCcChHHHHHHHHHHHHHHHHHH
Q 024066 86 ENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT-------IYCGGAGNGAAAKICNNLTMAVSMLG 158 (273)
Q Consensus 86 ~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i-------~~~G~~g~a~~~Kl~~n~~~~~~~~~ 158 (273)
|++|+|+||+|++..+..|+ .+|+||+++++++++|+|+.++.++ +|+|+.|+|+.+||++|.+.++++++
T Consensus 121 -Gi~fvd~pVsGg~~gA~~G~-~im~GG~~ea~~~v~pll~~ig~~v~~~~~~~~~~G~~Gag~~vKmv~N~i~~~~m~~ 198 (484)
T 4gwg_A 121 -GILFVGSGVSGGEEGARYGP-SLMPGGNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQL 198 (484)
T ss_dssp -TCEEEEEEEESHHHHHHHCC-EEEEEECGGGHHHHHHHHHHHSCBCTTSCBSBCCCEETTHHHHHHHHHHHHHHHHHHH
T ss_pred -ccccccCCccCCHHHHhcCC-eeecCCCHHHHHHHHHHHHHhcCcccCCCceEEEECCccHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999999 9999999999999999999999988 89999999999999999999999999
Q ss_pred HHHHHHHHHH-cCCCHHHHHHHH---hhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHH-----HH-HHHHHH
Q 024066 159 VSEALTLGQS-LGISASTLTKIL---NSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAK-----DL-NLALAS 228 (273)
Q Consensus 159 ~~Ea~~la~~-~Gl~~~~~~~~l---~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~K-----D~-~~~~~~ 228 (273)
++|++.++++ .|+|++++.+++ +.+.++||+++...+ .+..+|+++++.++...+ +- ++....
T Consensus 199 iaEa~~l~~~~~Gld~~~l~~v~~~w~~G~~~S~l~e~~~~-------~l~~~D~~g~~~ld~i~d~~~~kgtG~wt~~~ 271 (484)
T 4gwg_A 199 ICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITAN-------ILKFQDTDGKHLLPKIRDSAGQKGTGKWTAIS 271 (484)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHH-------HHHCBCTTSSBSGGGSCCCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHcCCCccchHHHHHHH-------HHhcCCccCCccHHHHhccccCcchHHHHHHH
Confidence 9999999999 999999998886 677888998775532 133456665566666543 22 456778
Q ss_pred HHHhCCCChHHHH-HHHHHHHH
Q 024066 229 AKEVGVDCPLTSQ-AQDIYAKL 249 (273)
Q Consensus 229 a~~~g~~~~~~~~-~~~~~~~a 249 (273)
|.+.|+|+|++.. +..+|.+.
T Consensus 272 A~~~gvp~p~i~~av~~R~~S~ 293 (484)
T 4gwg_A 272 ALEYGVPVTLIGEAVFARCLSS 293 (484)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHcCCCchHHHHHHHHHHHhh
Confidence 8999999996555 44676554
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-29 Score=234.42 Aligned_cols=221 Identities=17% Similarity=0.206 Sum_probs=190.5
Q ss_pred CCCCCCCCHHHHHhc---CCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhc
Q 024066 5 MGVPTKETPFEVAEA---SDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEK 81 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~---advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~ 81 (273)
.|++.+.|++|++++ +|+||+|||++.++++++. ++.+.+ .++++|||+||+.|.+++++.+.+.++
T Consensus 57 ~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~vl~---~l~~~l--~~g~iIId~s~~~~~~~~~l~~~l~~~----- 126 (497)
T 2p4q_A 57 KSIIGATSIEDFISKLKRPRKVMLLVKAGAPVDALIN---QIVPLL--EKGDIIIDGGNSHFPDSNRRYEELKKK----- 126 (497)
T ss_dssp SSEECCSSHHHHHHTSCSSCEEEECCCSSHHHHHHHH---HHGGGC--CTTCEEEECSCCCHHHHHHHHHHHHHT-----
T ss_pred CCeEEeCCHHHHHhcCCCCCEEEEEcCChHHHHHHHH---HHHHhC--CCCCEEEECCCCChhHHHHHHHHHHHc-----
Confidence 477888999999987 9999999999989999985 365553 457899999999999999999988753
Q ss_pred cCCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCC------eEEeCCcChHHHHHHHHHHHHHHH
Q 024066 82 KDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKN------TIYCGGAGNGAAAKICNNLTMAVS 155 (273)
Q Consensus 82 ~g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~------i~~~G~~g~a~~~Kl~~n~~~~~~ 155 (273)
|++|+++||+|+|..+..|+ ++|+||+++++++++|+|+.++.+ ++|+|+.|.|+.+|+++|.+.+..
T Consensus 127 -----g~~~v~~pVsgg~~~a~~G~-~im~gg~~e~~~~v~~ll~~~g~~~dGe~~v~~vg~~G~g~~~Kl~~N~~~~~~ 200 (497)
T 2p4q_A 127 -----GILFVGSGVSGGEEGARYGP-SLMPGGSEEAWPHIKNIFQSISAKSDGEPCCEWVGPAGAGHYVKMVHNGIEYGD 200 (497)
T ss_dssp -----TCEEEEEEEESHHHHHHHCC-EEEEEECGGGHHHHHHHHHHHSCEETTEESCCCCEETTHHHHHHHHHHHHHHHH
T ss_pred -----CCceeCCCcccChhHhhcCC-eEEecCCHHHHHHHHHHHHHhcCccCCCCceEEECCccHHHHHHHHHHHHHHHH
Confidence 37899999999999999999 899999999999999999999987 789999999999999999999999
Q ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHh---hcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHH-----HHHH-HH
Q 024066 156 MLGVSEALTLGQS-LGISASTLTKILN---SSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMA-----KDLN-LA 225 (273)
Q Consensus 156 ~~~~~Ea~~la~~-~Gl~~~~~~~~l~---~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~-----KD~~-~~ 225 (273)
+.+++|++.++++ .|++++++.+++. .+.+.||+.+.+.+ .+..+||++.|.++.+. ||.. ++
T Consensus 201 ~~~laEa~~l~~~~lGl~~~~~~~~~~~w~~g~~~S~l~~~~~~-------~l~~~d~~~~~~vd~i~D~~~~KgtG~~~ 273 (497)
T 2p4q_A 201 MQLICEAYDIMKRLGGFTDKEISDVFAKWNNGVLDSFLVEITRD-------ILKFDDVDGKPLVEKIMDTAGQKGTGKWT 273 (497)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTTTTCBHHHHHHHH-------HHTCBCTTSSBGGGGSCCCCCCCSHHHHH
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHhcCCccccHHHHHHHH-------HHhcCCCCCccHHHHHHHhhccchHHHHH
Confidence 9999999999999 6999999998884 56677877664422 24467886678999888 8875 78
Q ss_pred HHHHHHhCCCChHHHHHH-HHHHH
Q 024066 226 LASAKEVGVDCPLTSQAQ-DIYAK 248 (273)
Q Consensus 226 ~~~a~~~g~~~~~~~~~~-~~~~~ 248 (273)
.+.+++.|+++|++..+. .++..
T Consensus 274 ~~~A~~~Gv~~P~~~~av~ar~~s 297 (497)
T 2p4q_A 274 AINALDLGMPVTLIGEAVFARCLS 297 (497)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCchHHHHHHHHHhh
Confidence 999999999999999864 55443
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.4e-28 Score=223.27 Aligned_cols=211 Identities=15% Similarity=0.212 Sum_probs=173.7
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChH----------HHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSS----------HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 76 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~----------av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~ 76 (273)
.+++++++|++++||+||+|||+|. .+++++. ++.+.+ .++++||++||+.|++++++.+.+.+.
T Consensus 72 l~~ttd~~ea~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~---~i~~~l--~~g~iVV~~STv~pgtt~~l~~~l~e~ 146 (446)
T 4a7p_A 72 LSFTTDLAEGVKDADAVFIAVGTPSRRGDGHADLSYVFAAAR---EIAENL--TKPSVIVTKSTVPVGTGDEVERIIAEV 146 (446)
T ss_dssp EEEESCHHHHHTTCSEEEECCCCCBCTTTCCBCTHHHHHHHH---HHHHSC--CSCCEEEECSCCCTTHHHHHHHHHHHH
T ss_pred EEEECCHHHHHhcCCEEEEEcCCCCccccCCccHHHHHHHHH---HHHHhc--CCCCEEEEeCCCCchHHHHHHHHHHHh
Confidence 4678899999999999999999985 5888885 466664 467899999999999999999998764
Q ss_pred hhhhccCCCCCceEEEecCCCCHHHHhcCce--------EEEeecC-HHHHHHHHHHHHHhcCC---eEEeCCcChHHHH
Q 024066 77 ILKEKKDSWENPVMLDAPVSGGVLAAEAGTL--------TFMVGGS-EDAYQAAKPLFLSMGKN---TIYCGGAGNGAAA 144 (273)
Q Consensus 77 g~~~~~g~~~g~~~ldapv~G~~~~a~~g~l--------~~~vgG~-~~~~~~~~~~l~~~~~~---i~~~G~~g~a~~~ 144 (273)
+ .. .|.+|.++|..+..|++ .+++||+ ++++++++++|+.+.++ ++++++++.|+.+
T Consensus 147 ~----------~~-~d~~v~~~Pe~a~eG~a~~d~~~p~~ivvG~~~~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~ 215 (446)
T 4a7p_A 147 A----------PN-SGAKVVSNPEFLREGAAIEDFKRPDRVVVGTEDEFARQVMREIYRPLSLNQSAPVLFTGRRTSELI 215 (446)
T ss_dssp S----------TT-SCCEEEECCCCCCTTSHHHHHHSCSCEEEECSCHHHHHHHHHHHCSCC-----CEEEECHHHHHHH
T ss_pred C----------CC-CCceEEeCcccccccchhhhccCCCEEEEeCCcHHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHH
Confidence 2 11 45666666666666664 6899986 78999999999999875 6889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHH
Q 024066 145 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNL 224 (273)
Q Consensus 145 Kl~~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~ 224 (273)
|+++|++.+.++++++|+..+|++.|+|+++++++++.++- +... .+ ++.++|...++.||+.+
T Consensus 216 Kl~~N~~~a~~ia~~nE~~~l~~~~GiD~~~v~~~~~~~~r---ig~~------~l-------~pg~G~gg~c~~KD~~~ 279 (446)
T 4a7p_A 216 KYAANAFLAVKITFINEIADLCEQVGADVQEVSRGIGMDNR---IGGK------FL-------HAGPGYGGSCFPKDTLA 279 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTT---C---------CC-------CCCSCCCTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCC---CCCc------cC-------CCCCCcchhhHHHHHHH
Confidence 99999999999999999999999999999999999987531 1000 00 12346889999999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHH
Q 024066 225 ALASAKEVGVDCPLTSQAQDIYAKL 249 (273)
Q Consensus 225 ~~~~a~~~g~~~~~~~~~~~~~~~a 249 (273)
+++.|++.|+++|++++++++.+.-
T Consensus 280 l~~~A~~~g~~~~l~~~~~~iN~~~ 304 (446)
T 4a7p_A 280 LMKTAADNETPLRIVEATVQVNDAR 304 (446)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999877543
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.6e-28 Score=223.87 Aligned_cols=220 Identities=15% Similarity=0.080 Sum_probs=175.0
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChH--------HHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHh-h-
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSS--------HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVS-N- 75 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~--------av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~-~- 75 (273)
|...+++..+++++||+||+|||++. ++..|....+++.+.+ .++++||++||+.|++++++++.+. +
T Consensus 88 g~l~~ttd~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l--~~g~iVV~~STv~pgtt~~v~~~ile~~ 165 (478)
T 3g79_A 88 GKFECTPDFSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYL--KPGMLVVLESTITPGTTEGMAKQILEEE 165 (478)
T ss_dssp TCEEEESCGGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHC--CTTCEEEECSCCCTTTTTTHHHHHHHHH
T ss_pred CCeEEeCcHHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhc--CCCcEEEEeCCCChHHHHHHHHHHHHHh
Confidence 43333344788999999999999983 3333433334576664 4678999999999999999998654 2
Q ss_pred chhhhccCCCCCceEEEecCCCCHHHHhcCce---EEEeecCHHHHHHHHHHHHHh-cCCeEEeCCcChHHHHHHHHHHH
Q 024066 76 CILKEKKDSWENPVMLDAPVSGGVLAAEAGTL---TFMVGGSEDAYQAAKPLFLSM-GKNTIYCGGAGNGAAAKICNNLT 151 (273)
Q Consensus 76 ~g~~~~~g~~~g~~~ldapv~G~~~~a~~g~l---~~~vgG~~~~~~~~~~~l~~~-~~~i~~~G~~g~a~~~Kl~~n~~ 151 (273)
.|+. ...++.++++|+++.+..+..+.+ .+++|++++.+++++++|+.+ +.+++++|++++|+.+|+++|++
T Consensus 166 ~g~~----~~~d~~v~~~Pe~~~~G~a~~~~~~~~~Iv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~aE~~Kl~~N~~ 241 (478)
T 3g79_A 166 SGLK----AGEDFALAHAPERVMVGRLLKNIREHDRIVGGIDEASTKRAVELYSPVLTVGQVIPMSATAAEVTKTAENTF 241 (478)
T ss_dssp HCCC----BTTTBEEEECCCCCCTTSHHHHHHHSCEEEEESSHHHHHHHHHHHGGGCSSCCEEEEEHHHHHHHHHHHHHH
T ss_pred cCCC----cCCceeEEeCCccCCccchhhhhcCCcEEEEeCCHHHHHHHHHHHhhhccCCeEEeCCHHHHHHHHHHHHHH
Confidence 2210 012368999999988887776655 688899999999999999999 78899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCC--cchhhHHHHHHHHHHHH
Q 024066 152 MAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG--FASKLMAKDLNLALASA 229 (273)
Q Consensus 152 ~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--f~~~~~~KD~~~~~~~a 229 (273)
..+++++++|++.+|++.|+|+++++++++..+ .. ++..+.|.|+ |...|+.||+.++++.+
T Consensus 242 ~a~~Ia~~nE~~~l~e~~GiD~~~v~~~~~~~~----~~------------ri~~~~~~PG~G~GG~c~~KD~~~l~~~a 305 (478)
T 3g79_A 242 RDLQIAAINQLALYCEAMGINVYDVRTGVDSLK----GE------------GITRAVLWPGAGVGGHCLTKDTYHLERGV 305 (478)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSC----CS------------SSCCCCCCCCSCCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHCCCc----hh------------hhccccCCCCCCcchhhHHHHHHHHHHHH
Confidence 999999999999999999999999999998642 11 1223456665 46789999999999999
Q ss_pred HHhCCC-------ChHHHHHHHHHH
Q 024066 230 KEVGVD-------CPLTSQAQDIYA 247 (273)
Q Consensus 230 ~~~g~~-------~~~~~~~~~~~~ 247 (273)
++.|++ ++++++++++-+
T Consensus 306 ~~~g~~~~~~~~~~~li~~~~~iN~ 330 (478)
T 3g79_A 306 KIGRGELDYPEGADSIYVLARKVND 330 (478)
T ss_dssp TTSSCCCCCCSSCCCHHHHHHHHHH
T ss_pred HHcCCCcccccchhHHHHHHHHHHH
Confidence 999987 899999887554
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-27 Score=221.57 Aligned_cols=214 Identities=19% Similarity=0.248 Sum_probs=183.5
Q ss_pred CCCCCCCHHHHHhc---CCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhcc
Q 024066 6 GVPTKETPFEVAEA---SDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 82 (273)
Q Consensus 6 Ga~~~~s~~e~~~~---advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~ 82 (273)
|++.++|++|++++ +|+||+|||++.++++++. ++.+.+ .++++|||+||+.|..++++.+.+.++
T Consensus 62 gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~vl~---~l~~~l--~~g~iIId~s~g~~~~t~~l~~~l~~~------ 130 (480)
T 2zyd_A 62 KLVPYYTVKEFVESLETPRRILLMVKAGAGTDAAID---SLKPYL--DKGDIIIDGGNTFFQDTIRRNRELSAE------ 130 (480)
T ss_dssp CEEECSSHHHHHHTBCSSCEEEECSCSSSHHHHHHH---HHGGGC--CTTCEEEECSCCCHHHHHHHHHHHHHT------
T ss_pred CeEEeCCHHHHHhCCCCCCEEEEECCCHHHHHHHHH---HHHhhc--CCCCEEEECCCCCHHHHHHHHHHHHHC------
Confidence 77788999999987 9999999999889999985 365553 456899999999999999998888653
Q ss_pred CCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCC-------eEEeCCcChHHHHHHHHHHHHHHH
Q 024066 83 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKN-------TIYCGGAGNGAAAKICNNLTMAVS 155 (273)
Q Consensus 83 g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~-------i~~~G~~g~a~~~Kl~~n~~~~~~ 155 (273)
|+.|+++||+|++..+..|. ++|+||+++.+++++++|+.++.+ +.|+|+.|.|..+|+++|.+.+..
T Consensus 131 ----g~~~v~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll~~~g~~~~dGe~~v~~~g~~G~g~~~Kl~~N~~~~~~ 205 (480)
T 2zyd_A 131 ----GFNFIGTGVSGGEEGALKGP-SIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGD 205 (480)
T ss_dssp ----TCEEEEEEEESHHHHHHHCC-EEEEESCHHHHHHHHHHHHHHSCBCTTSCBSBCCCBSTTHHHHHHHHHHHHHHHH
T ss_pred ----CCCeeCCccccCHhHHhcCC-eEEecCCHHHHHHHHHHHHHHhccccCCCceEEEECCccHHHHHHHHHHHHHHHH
Confidence 37899999999999999999 899999999999999999999987 799999999999999999999999
Q ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHH---hhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHH-----HHH-HHH
Q 024066 156 MLGVSEALTLGQS-LGISASTLTKIL---NSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMA-----KDL-NLA 225 (273)
Q Consensus 156 ~~~~~Ea~~la~~-~Gl~~~~~~~~l---~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~-----KD~-~~~ 225 (273)
+.+++|++.++++ .|++++++.+++ +.+..+||+.+...+ .+..+||.++|.++... ||. +.+
T Consensus 206 ~~~laEa~~l~~~~lGl~~~~~~~l~~~w~~g~~~s~l~~~~~~-------~l~~~d~~~~~~v~~i~D~~~~k~tG~~~ 278 (480)
T 2zyd_A 206 MQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKD-------IFTKKDEDGNYLVDVILDEAANKGTGKWT 278 (480)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTTCBHHHHHHHH-------HHHCBCTTSSBGGGGBCCCCCCCSCTTHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCcccHHHHHHHH-------HHhcCCCCCcchHHHHHHHhcCchHHHHH
Confidence 9999999999999 699999999888 456667776554322 12356776678888766 443 478
Q ss_pred HHHHHHhCCCChHHHHH
Q 024066 226 LASAKEVGVDCPLTSQA 242 (273)
Q Consensus 226 ~~~a~~~g~~~~~~~~~ 242 (273)
.+.+++.|+++|+++.+
T Consensus 279 ~~~A~~~gv~~Pi~~~a 295 (480)
T 2zyd_A 279 SQSALDLGEPLSLITES 295 (480)
T ss_dssp HHHHHHHTCCCHHHHHH
T ss_pred HHHHHHcCCCCchHHHH
Confidence 89999999999999986
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.94 E-value=5.9e-27 Score=203.27 Aligned_cols=215 Identities=18% Similarity=0.177 Sum_probs=175.5
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCC
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 84 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~ 84 (273)
.|++ +++.|++++||+||+|||++..++.+. ++.+.+ ++ +|||+||+.|.+.+++.+.+.++
T Consensus 44 ~g~~--~~~~~~~~~aDvvi~~v~~~~~~~~~~----~~~~~~---~~-~vi~~s~~~~~~~~~l~~~~~~~-------- 105 (264)
T 1i36_A 44 VGVT--ETSEEDVYSCPVVISAVTPGVALGAAR----RAGRHV---RG-IYVDINNISPETVRMASSLIEKG-------- 105 (264)
T ss_dssp HTCE--ECCHHHHHTSSEEEECSCGGGHHHHHH----HHHTTC---CS-EEEECSCCCHHHHHHHHHHCSSS--------
T ss_pred CCCc--CCHHHHHhcCCEEEEECCCHHHHHHHH----HHHHhc---Cc-EEEEccCCCHHHHHHHHHHHhhC--------
Confidence 3555 778899999999999999988777652 355442 34 99999999999999999887531
Q ss_pred CCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHH
Q 024066 85 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEAL 163 (273)
Q Consensus 85 ~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~ 163 (273)
| |+|+||+++|..+..|.+ +++||+.+ +++++ |+.++.+++++++ +|.+..+|+++|.+...++.+++|++
T Consensus 106 --g--~~~~~v~~~~~~~~~g~~-~~~~g~~~--~~~~~-l~~~g~~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~ 177 (264)
T 1i36_A 106 --G--FVDAAIMGSVRRKGADIR-IIASGRDA--EEFMK-LNRYGLNIEVRGREPGDASAIKMLRSSYTKGVSALLWETL 177 (264)
T ss_dssp --E--EEEEEECSCHHHHGGGCE-EEEESTTH--HHHHG-GGGGTCEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --C--eeeeeeeCCccccccCCe-EEecCCcH--HHhhh-HHHcCCeeEECCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 999999999999999997 99999876 88999 9999999999998 89999999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHH
Q 024066 164 TLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQ 243 (273)
Q Consensus 164 ~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~~~~~~ 243 (273)
.++++.|++++ +++.+..+.+.+|.. .. + .+..++|.++|+ ..||++.+.+++++. +++|+.+++.
T Consensus 178 ~la~~~G~~~~-~~~~~~~~~g~~~~~--~~--~-----~~~~~~~~~g~~---~~~~~~~~~~~a~~~-v~~p~~~~v~ 243 (264)
T 1i36_A 178 TAAHRLGLEED-VLEMLEYTEGNDFRE--SA--I-----SRLKSSCIHARR---RYEEMKEVQDMLAEV-IDPVMPTCII 243 (264)
T ss_dssp HHHHHTTCHHH-HHHHHHTTSCSSTHH--HH--H-----HHHHHHHHTHHH---HHHHHHHHHHHHHTT-SCCSHHHHHH
T ss_pred HHHHHcCCcHH-HHHHHHHhcCccHHH--HH--H-----HHhcCCCCcchh---hHHHHHHHHHHHHHh-cCchHHHHHH
Confidence 99999999997 779888765444431 11 1 133467777766 689999999999999 9999999999
Q ss_pred HHHHHHHHCCCCCCcH
Q 024066 244 DIYAKLCENGHDSKDF 259 (273)
Q Consensus 244 ~~~~~a~~~G~g~~d~ 259 (273)
++|+++.+.|++.+|-
T Consensus 244 ~~~~~~~~~~~~~~~~ 259 (264)
T 1i36_A 244 RIFDKLKDVKVSADAR 259 (264)
T ss_dssp HHHHHHCC------GG
T ss_pred HHHHHHHHcCCChhhH
Confidence 9999999988877663
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-26 Score=215.19 Aligned_cols=213 Identities=16% Similarity=0.196 Sum_probs=175.7
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChH---------HHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhch
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSS---------HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCI 77 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~---------av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g 77 (273)
.+.++++++++++||+||+|||++. .+++++. .+.+.+ .++++||++||+.|++++++.+.+.+++
T Consensus 66 l~~t~d~~ea~~~aDvViiaVptp~~~~~~~dl~~v~~v~~---~i~~~l--~~g~iVV~~STv~pgt~~~l~~~l~~~~ 140 (450)
T 3gg2_A 66 LRFGTEIEQAVPEADIIFIAVGTPAGEDGSADMSYVLDAAR---SIGRAM--SRYILIVTKSTVPVGSYRLIRKAIQEEL 140 (450)
T ss_dssp EEEESCHHHHGGGCSEEEECCCCCBCTTSSBCCHHHHHHHH---HHHHHC--CSCEEEEECSCCCTTHHHHHHHHHHHHH
T ss_pred EEEECCHHHHHhcCCEEEEEcCCCcccCCCcChHHHHHHHH---HHHhhC--CCCCEEEEeeeCCCcchHHHHHHHHHhc
Confidence 4667899999999999999999985 7888875 355553 4678999999999999999999887642
Q ss_pred hhhccCCCCCceEEEecCCCCHHHHhcCce--------EEEeecC-HHHHHHHHHHHHHhcC--CeEEeCCcChHHHHHH
Q 024066 78 LKEKKDSWENPVMLDAPVSGGVLAAEAGTL--------TFMVGGS-EDAYQAAKPLFLSMGK--NTIYCGGAGNGAAAKI 146 (273)
Q Consensus 78 ~~~~~g~~~g~~~ldapv~G~~~~a~~g~l--------~~~vgG~-~~~~~~~~~~l~~~~~--~i~~~G~~g~a~~~Kl 146 (273)
. .. ...+|.+|.++|..+..|+. .+++||+ ++++++++++|+.+.+ .++++++++.|+.+|+
T Consensus 141 ~--~~-----~~~~d~~v~~~Pe~a~eG~~~~~~~~p~~ivvG~~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~aE~~Kl 213 (450)
T 3gg2_A 141 D--KR-----EVLIDFDIASNPEFLKEGNAIDDFMKPDRVVVGVDSDRARELITSLYKPMLLNNFRVLFMDIASAEMTKY 213 (450)
T ss_dssp H--HT-----TCCCCEEEEECCCCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTTCCSCCCEEEECHHHHHHHHH
T ss_pred c--cc-----CcCcceeEEechhhhcccchhhhccCCCEEEEEcCCHHHHHHHHHHHHHHhcCCCeEEecCHHHHHHHHH
Confidence 0 00 01366777777777777776 5888984 7899999999999987 3678899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCC--CcchhhHHHHHHH
Q 024066 147 CNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG--GFASKLMAKDLNL 224 (273)
Q Consensus 147 ~~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~--~f~~~~~~KD~~~ 224 (273)
++|.+...++++++|+..+|++.|+|+++++++++.++ .+ ....|.| +|...++.||+++
T Consensus 214 ~~N~~~a~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~---ri---------------g~~~~~pg~G~gg~c~~KD~~~ 275 (450)
T 3gg2_A 214 AANAMLATRISFMNDVANLCERVGADVSMVRLGIGSDS---RI---------------GSKFLYPGCGYGGSCFPKDVKA 275 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTST---TT---------------CSSSCCCSSCCCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHcCCC---CC---------------CcccCCCCCCCCcccHHhhHHH
Confidence 99999999999999999999999999999999998752 01 1122333 5889999999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHH
Q 024066 225 ALASAKEVGVDCPLTSQAQDIYAKL 249 (273)
Q Consensus 225 ~~~~a~~~g~~~~~~~~~~~~~~~a 249 (273)
+++.|++.|+++|++++++++.+.-
T Consensus 276 l~~~a~~~g~~~~l~~~~~~iN~~~ 300 (450)
T 3gg2_A 276 LIRTAEDNGYRMEVLEAVERVNEKQ 300 (450)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 9999999999999999999887643
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-25 Score=208.01 Aligned_cols=218 Identities=21% Similarity=0.287 Sum_probs=182.4
Q ss_pred CCCCCCCHHHHHhc---CCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhcc
Q 024066 6 GVPTKETPFEVAEA---SDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 82 (273)
Q Consensus 6 Ga~~~~s~~e~~~~---advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~ 82 (273)
|++.+.|+.|++++ +|+||+|||++.++++++. ++.+.+ .++++|||+||..|..++++.+.+.++
T Consensus 52 gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~vl~---~l~~~l--~~g~iiId~s~~~~~~~~~l~~~l~~~------ 120 (474)
T 2iz1_A 52 NLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDATIK---SLLPLL--DIGDILIDGGNTHFPDTMRRNAELADS------ 120 (474)
T ss_dssp CEEECSSHHHHHHTBCSSCEEEECCCTTHHHHHHHH---HHGGGC--CTTCEEEECSCCCHHHHHHHHHHTTTS------
T ss_pred CeEEeCCHHHHHhhccCCCEEEEEccCchHHHHHHH---HHHhhC--CCCCEEEECCCCCHHHHHHHHHHHHHC------
Confidence 67778899999887 9999999999989998885 355543 356899999999999999998877542
Q ss_pred CCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCC--------eEEeCCcChHHHHHHHHHHHHHH
Q 024066 83 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKN--------TIYCGGAGNGAAAKICNNLTMAV 154 (273)
Q Consensus 83 g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~--------i~~~G~~g~a~~~Kl~~n~~~~~ 154 (273)
|+.|+++|++|++..+..|. ++|+||+++.+++++++|+.++.+ +.|+|+.|.|..+|+++|.+.+.
T Consensus 121 ----g~~~v~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll~~~g~~~~~dge~~~~~~g~~g~g~~~Kl~~N~~~~~ 195 (474)
T 2iz1_A 121 ----GINFIGTGVSGGEKGALLGP-SMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYG 195 (474)
T ss_dssp ----SCEEEEEEECSHHHHHHHCC-CEEEEECHHHHHHHHHHHHHHSCBCTTTCCBSBCCCBSTTHHHHHHHHHHHHHHH
T ss_pred ----CCeEECCCCCCChhhhccCC-eEEecCCHHHHHHHHHHHHHHhcccccCCCceEEEECCccHHHHHHHHHhHHHHH
Confidence 37899999999999999999 789999999999999999999987 68999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-cCCCHHHHHHHHh---hcCCcccccccCCCCCCcccCCCCCCCCCCC-cchhhHH-----HHHH-
Q 024066 155 SMLGVSEALTLGQS-LGISASTLTKILN---SSSARCWSSDSYNPVPGVMEGVPASRNYGGG-FASKLMA-----KDLN- 223 (273)
Q Consensus 155 ~~~~~~Ea~~la~~-~Gl~~~~~~~~l~---~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-f~~~~~~-----KD~~- 223 (273)
.+.+++|++.++++ .|++++++.+++. .+..+||+.+...+ .+..+||.++ |.++... ||..
T Consensus 196 ~~~~laEa~~l~~~~~Gl~~~~~~~l~~~w~~g~~~s~l~~~~~~-------~l~~~d~~~g~~~vd~i~D~~~~k~tG~ 268 (474)
T 2iz1_A 196 DMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITKE-------VLKRKDDEGEGYIVDKILDKAGNKGTGK 268 (474)
T ss_dssp HHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHH-------HTTCBCSSSSSBGGGGBCSCCCCCSHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccccHHHhhhh-------HhhcCCCCCChhHHHHHHHhhcccchHH
Confidence 99999999999999 7999999988884 45566665543321 1345678666 8888766 6655
Q ss_pred HHHHHHHHhCCCChHHHHHH-HHH
Q 024066 224 LALASAKEVGVDCPLTSQAQ-DIY 246 (273)
Q Consensus 224 ~~~~~a~~~g~~~~~~~~~~-~~~ 246 (273)
.+.+.+++.|+++|+++.+. .++
T Consensus 269 ~~~~~A~~~gv~~P~~~~av~ar~ 292 (474)
T 2iz1_A 269 WTSESALDLGVPLPLITESVFARY 292 (474)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCchHHHHHHHHH
Confidence 68899999999999999863 444
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-25 Score=207.86 Aligned_cols=222 Identities=17% Similarity=0.192 Sum_probs=184.4
Q ss_pred CCCCCCCCHHHHHh---cCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhc
Q 024066 5 MGVPTKETPFEVAE---ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEK 81 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~---~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~ 81 (273)
.|++.+.|+.|+++ ++|+||+|||++.++++++. .+.+.+ .++++|||+||+.|..++++.+.+.+.
T Consensus 49 ~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~vl~---~l~~~l--~~g~iII~~s~~~~~~~~~l~~~l~~~----- 118 (482)
T 2pgd_A 49 TKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDNFIE---KLVPLL--DIGDIIIDGGNSEYRDTMRRCRDLKDK----- 118 (482)
T ss_dssp SSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHHHHH---HHHHHC--CTTCEEEECSCCCHHHHHHHHHHHHHT-----
T ss_pred CCeEEeCCHHHHHhhccCCCEEEEeCCChHHHHHHHH---HHHhhc--CCCCEEEECCCCCHHHHHHHHHHHHHc-----
Confidence 46777889999885 89999999999988998885 355443 356899999999999998998887652
Q ss_pred cCCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCe-------EEeCCcChHHHHHHHHHHHHHH
Q 024066 82 KDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT-------IYCGGAGNGAAAKICNNLTMAV 154 (273)
Q Consensus 82 ~g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i-------~~~G~~g~a~~~Kl~~n~~~~~ 154 (273)
|+.|+++|++|++..+..|+ .+++||+++.+++++++|+.++.++ +++|+.|.|+.+|+++|.+.+.
T Consensus 119 -----g~~~v~~pv~g~~~~a~~g~-~i~~gg~~e~~~~v~~ll~~~g~~v~d~~~~~~~~g~~g~g~~~Kl~~N~~~~~ 192 (482)
T 2pgd_A 119 -----GILFVGSGVSGGEDGARYGP-SLMPGGNKEAWPHIKAIFQGIAAKVGTGEPCCDWVGDDGAGHFVKMVHNGIEYG 192 (482)
T ss_dssp -----TCEEEEEEEESHHHHHHHCC-EEEEEECTTTHHHHHHHHHHHSCBCTTSCBSCCCCEETTHHHHHHHHHHHHHHH
T ss_pred -----CCeEeCCCCCCChhhhccCC-eEEeCCCHHHHHHHHHHHHHhhhhccCCCcceEEECCCcHHHHHHHHHHHHHHH
Confidence 37899999999999999999 8899999999999999999999876 7889999999999999999999
Q ss_pred HHHHHHHHHHHHHHc-CCCHHHHHHHHh---hcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhH------HHHHHH
Q 024066 155 SMLGVSEALTLGQSL-GISASTLTKILN---SSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLM------AKDLNL 224 (273)
Q Consensus 155 ~~~~~~Ea~~la~~~-Gl~~~~~~~~l~---~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~------~KD~~~ 224 (273)
.+.+++|++.++++. |++++++.+++. .+...|+..+...+ .+..++|+++|.++.. .++.+.
T Consensus 193 ~~~~i~Ea~~l~~~~~G~~~~~~~~~~~~w~~g~~~S~l~~~~~~-------~l~~~d~~~~~~ld~i~d~~~~k~t~~~ 265 (482)
T 2pgd_A 193 DMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITAS-------ILKFQDADGKHLLPKIRDSAGQKGTGKW 265 (482)
T ss_dssp HHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHH-------HHHCBCTTSSBSGGGSCCCCCCCSHHHH
T ss_pred HHHHHHHHHHHHHhcCCcCHHHHHHHHHHhcCCCcCchHHHHHhH-------HhhccCCCCCeeecccccccccccHHHH
Confidence 999999999999999 999999999885 44455655443221 1335677777877766 477889
Q ss_pred HHHHHHHhCCCChHHH-HHHHHHHHH
Q 024066 225 ALASAKEVGVDCPLTS-QAQDIYAKL 249 (273)
Q Consensus 225 ~~~~a~~~g~~~~~~~-~~~~~~~~a 249 (273)
+.+.+++.|+|+|++. .+.+++...
T Consensus 266 ~~~~A~~~Gv~~P~i~~av~~~~~s~ 291 (482)
T 2pgd_A 266 TAISALEYGVPVTLIGEAVFARCLSS 291 (482)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcchHHHHHHHHhhhh
Confidence 9999999999999996 555666433
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-25 Score=207.49 Aligned_cols=203 Identities=19% Similarity=0.208 Sum_probs=152.7
Q ss_pred HhcCCEEEEeCCChHH--------HHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh-chhhhccCCCCC
Q 024066 17 AEASDVVITMLPSSSH--------VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN-CILKEKKDSWEN 87 (273)
Q Consensus 17 ~~~advvi~~v~~~~a--------v~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~-~g~~~~~g~~~g 87 (273)
+++||+||+|||++.. +..|....+++.+.+ .+|++||++||+.|.+++++++.+.+ +|++ ...+
T Consensus 81 ~~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l--~~g~iVV~~STV~pgtt~~v~~~i~e~~g~~----~~~d 154 (431)
T 3ojo_A 81 PEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFL--KKGNTIIVESTIAPKTMDDFVKPVIENLGFT----IGED 154 (431)
T ss_dssp CCCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGC--CTTEEEEECSCCCTTHHHHTHHHHHHTTTCC----BTTT
T ss_pred hhhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhC--CCCCEEEEecCCChhHHHHHHHHHHHHcCCC----cCCC
Confidence 3479999999999973 223333334677764 46789999999999999999987644 3210 0123
Q ss_pred ceEEEecCCCCHHHHhcCce---EEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHH
Q 024066 88 PVMLDAPVSGGVLAAEAGTL---TFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALT 164 (273)
Q Consensus 88 ~~~ldapv~G~~~~a~~g~l---~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~ 164 (273)
+.++++|.+..+..+..+.+ .+++|++++++++++++|+.++++++|+|++++|+++|+++|++.++++++++|++.
T Consensus 155 ~~v~~~Pe~~~~G~A~~~~~~p~~Iv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~nE~~~ 234 (431)
T 3ojo_A 155 IYLVHCPERVLPGKILEELVHNNRIIGGVTKACIEAGKRVYRTFVQGEMIETDARTAEMSKLMENTYRDVNIALANELTK 234 (431)
T ss_dssp EEEEECCCCCCTTSHHHHHHHSCEEEEESSHHHHHHHHHHHTTTCCSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEECCCcCCCcchhhcccCCCEEEEeCCHHHHHHHHHHHHHHhCCcEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999988877776665 788888999999999999999988899999999999999999999999999999999
Q ss_pred HHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHH
Q 024066 165 LGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQD 244 (273)
Q Consensus 165 la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~~~~~~~ 244 (273)
+|++.|+|+++++++++..+. + ..+.| .++|...|+.||...+...+++.| ++++++++
T Consensus 235 l~e~~GiD~~~v~~~~~~~~r---i-~~l~p--------------G~G~GG~C~pkD~~~L~~~a~~~~---~li~~~~~ 293 (431)
T 3ojo_A 235 ICNNLNINVLDVIEMANKHPR---V-NIHQP--------------GPGVGGHCLAVDPYFIIAKDPENA---KLIQTGRE 293 (431)
T ss_dssp HHHHTTCCHHHHHHHHTTSTT---C-CCCCC--------------CSCCCCCCBCSCC---------CC---HHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHccCCC---c-ccCCC--------------CCCccccchhhhHHHHHHHHHHHh---HHHHHHHH
Confidence 999999999999999986531 1 11111 135667788899988888888877 77777765
Q ss_pred HH
Q 024066 245 IY 246 (273)
Q Consensus 245 ~~ 246 (273)
.-
T Consensus 294 iN 295 (431)
T 3ojo_A 294 IN 295 (431)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-24 Score=197.65 Aligned_cols=206 Identities=17% Similarity=0.155 Sum_probs=167.9
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCCh----------HHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSS----------SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~----------~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
+.++++++++++++||+||+|||++ ..+++++. ++.+ + .++++||++||+.|.+++++.+.+.+
T Consensus 96 ~l~~ttd~~ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~---~i~~-l--~~g~iVV~~STv~pgtt~~l~~~l~~ 169 (432)
T 3pid_A 96 NFRATTDKHDAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIR---DVTE-I--NPNAVMIIKSTIPVGFTRDIKERLGI 169 (432)
T ss_dssp CEEEESCHHHHHTTCSEEEECCCCEEETTTTEEECHHHHHHHH---HHHH-H--CTTSEEEECSCCCTTHHHHHHHHHTC
T ss_pred CeEEEcCHHHHHhCCCEEEEeCCCccccccccccHHHHHHHHH---HHHh-c--CCCcEEEEeCCCChHHHHHHHHHHhh
Confidence 4667889999999999999999998 36777764 3555 3 35689999999999999999998864
Q ss_pred chhhhccCCCCCceEEEecCCCCHHHHhcCce---EEEeecCHHHHHHHHHHHHH--hcCC-eEEeCCcChHHHHHHHHH
Q 024066 76 CILKEKKDSWENPVMLDAPVSGGVLAAEAGTL---TFMVGGSEDAYQAAKPLFLS--MGKN-TIYCGGAGNGAAAKICNN 149 (273)
Q Consensus 76 ~g~~~~~g~~~g~~~ldapv~G~~~~a~~g~l---~~~vgG~~~~~~~~~~~l~~--~~~~-i~~~G~~g~a~~~Kl~~n 149 (273)
..++.+|+++++..+..+.+ .+++||+++.++++.++|.. ++.. .++++++++|+.+||++|
T Consensus 170 ------------~~v~~sPe~~~~G~A~~~~l~p~rIvvG~~~~~~~~~~~ll~~~~~~~~~~v~~~~~~~AE~~Kl~~N 237 (432)
T 3pid_A 170 ------------DNVIFSPEFLREGRALYDNLHPSRIVIGERSARAERFADLLKEGAIKQDIPTLFTDSTEAEAIKLFAN 237 (432)
T ss_dssp ------------CCEEECCCCCCTTSHHHHHHSCSCEEESSCSHHHHHHHHHHHHHCSSSSCCEEECCHHHHHHHHHHHH
T ss_pred ------------ccEeecCccCCcchhhhcccCCceEEecCCHHHHHHHHHHHHhhhccCCCeEEecCccHHHHHHHHHH
Confidence 23566999999999999888 89999999999999999987 4443 366789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHH
Q 024066 150 LTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASA 229 (273)
Q Consensus 150 ~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a 229 (273)
++.+.++++++|+..+|++.|+|+++++++++..+ ++...+ +.| .++|...|+.||...++.
T Consensus 238 ~~~a~~Ia~~nEl~~lae~~GiD~~~v~~~~~~dp---rig~~~-~~p------------g~G~GG~C~pkD~~~L~~-- 299 (432)
T 3pid_A 238 TYLALRVAYFNELDSYAESQGLNSKQIIEGVCLDP---RIGNHY-NNP------------SFGYGGYCLPKDTKQLLA-- 299 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTST---TTCSSS-CCC------------CSCCCTTTHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCC---CCCccc-CCC------------CCCCcccchhhhHHHHHH--
Confidence 99999999999999999999999999999998652 111110 000 125678899999988864
Q ss_pred HHhCCCChHHHHHHHHHH
Q 024066 230 KEVGVDCPLTSQAQDIYA 247 (273)
Q Consensus 230 ~~~g~~~~~~~~~~~~~~ 247 (273)
+..|++.++++++++.-+
T Consensus 300 ~~~~~~~~li~~~~~~N~ 317 (432)
T 3pid_A 300 NYESVPNNIIAAIVDANR 317 (432)
T ss_dssp HTTTSCCSHHHHHHHHHH
T ss_pred HhcCCchhHHHHHHHHHH
Confidence 446999999999987543
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-24 Score=201.87 Aligned_cols=214 Identities=15% Similarity=0.241 Sum_probs=177.9
Q ss_pred CCCCCCHHHHHhc---CCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccC
Q 024066 7 VPTKETPFEVAEA---SDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKD 83 (273)
Q Consensus 7 a~~~~s~~e~~~~---advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g 83 (273)
++.+.|+.|++++ +|+||+|||++.++++++. .+.+.+ .++++|||+||+.|..++++.+.+.+.
T Consensus 53 i~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~vl~---~l~~~l--~~g~iIId~sng~~~~~~~l~~~l~~~------- 120 (478)
T 1pgj_A 53 LKAFETMEAFAASLKKPRKALILVQAGAATDSTIE---QLKKVF--EKGDILVDTGNAHFKDQGRRAQQLEAA------- 120 (478)
T ss_dssp EEECSCHHHHHHHBCSSCEEEECCCCSHHHHHHHH---HHHHHC--CTTCEEEECCCCCHHHHHHHHHHHHTT-------
T ss_pred eEEECCHHHHHhcccCCCEEEEecCChHHHHHHHH---HHHhhC--CCCCEEEECCCCChHHHHHHHHHHHHC-------
Confidence 5667899999885 9999999999888888885 354443 356899999999999999998887642
Q ss_pred CCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCC-------eEEeCCcChHHHHHHHHHHHHHHHH
Q 024066 84 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKN-------TIYCGGAGNGAAAKICNNLTMAVSM 156 (273)
Q Consensus 84 ~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~-------i~~~G~~g~a~~~Kl~~n~~~~~~~ 156 (273)
|+.|+++||+|++..+..|. .+|+||+++.+++++++|+.++.+ ++++|+.|.++.+|+++|.+.+..+
T Consensus 121 ---g~~~v~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll~~~g~~~~dg~~~v~~~g~~G~g~~~Kl~~N~~~~~~~ 196 (478)
T 1pgj_A 121 ---GLRFLGMGISGGEEGARKGP-AFFPGGTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSGGAGSCVKMYHNSGEYAIL 196 (478)
T ss_dssp ---TCEEEEEEEESHHHHHHHCC-EEEEEECHHHHHHHHHHHHHHSCBCTTSCBSCCCCCSTTHHHHHHHHHHHHHHHHH
T ss_pred ---CCeEEEeeccCCHHHHhcCC-eEeccCCHHHHHHHHHHHHHhcccccCCCeeEEEeCCchHHHHHhhHHHHHHHHHH
Confidence 37899999999999999999 799999999999999999999987 7899999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHh----hcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHH-----HHH-HHHH
Q 024066 157 LGVSEALTLGQSLGISASTLTKILN----SSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMA-----KDL-NLAL 226 (273)
Q Consensus 157 ~~~~Ea~~la~~~Gl~~~~~~~~l~----~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~-----KD~-~~~~ 226 (273)
.+++|++.++++.|++++++.+++. .+.+.|+..+...+ .+..+||.+.|.++... ||. +.+.
T Consensus 197 ~~i~Ea~~l~~~~G~~~~~~~~l~~~w~~~g~~~s~l~~~~~~-------~l~~~d~~G~~~ld~i~D~~~~kgtg~~~~ 269 (478)
T 1pgj_A 197 QIWGEVFDILRAMGLNNDEVAAVLEDWKSKNFLKSYMLDISIA-------AARAKDKDGSYLTEHVMDRIGSKGTGLWSA 269 (478)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSTTCBHHHHHHHH-------HHHCBCTTSSBGGGGBCCCCCCCSHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhccCCCcCchHHHhhch-------hhhcCCCCChhHHHHHHHHhcCccHHHHHH
Confidence 9999999999999999999999886 45566665443321 12245663237777766 554 7999
Q ss_pred HHHHHhCCCChHHHHHH
Q 024066 227 ASAKEVGVDCPLTSQAQ 243 (273)
Q Consensus 227 ~~a~~~g~~~~~~~~~~ 243 (273)
+++++.|+|+|+++.+.
T Consensus 270 ~~A~~~Gv~~Pi~~~av 286 (478)
T 1pgj_A 270 QEALEIGVPAPSLNMAV 286 (478)
T ss_dssp HHHHHHTCCCHHHHHHH
T ss_pred HHHHHhCCCChHHHHHH
Confidence 99999999999999843
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-24 Score=202.16 Aligned_cols=218 Identities=12% Similarity=0.178 Sum_probs=172.0
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHH--------------HHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHH
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHV--------------LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISA 71 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av--------------~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~ 71 (273)
+++.++++.+++++||+||+|||++... .+++. .+.+.+ .++++||++||+.|.+++++.+
T Consensus 69 ~~~~t~~~~e~~~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~---~i~~~l--~~g~iVV~~STv~~g~~~~l~~ 143 (467)
T 2q3e_A 69 NLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACAR---RIVQNS--NGYKIVTEKSTVPVRAAESIRR 143 (467)
T ss_dssp TEEEESCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHH---HHHHTC--CSEEEEEECSCCCTTHHHHHHH
T ss_pred CEEEECCHHHHHhcCCEEEEEcCCchhhccccccCCCcHHHHHHHHH---HHHhhC--CCCCEEEECCcCCchHHHHHHH
Confidence 5667789999999999999999988753 33332 244442 4568999999999999999998
Q ss_pred HHhhchhhhccCCCCCceEEEecCCCCHHHHhcCceE--------EEeec-----CHHHHHHHHHHHHHh-cCCeEEeCC
Q 024066 72 AVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLT--------FMVGG-----SEDAYQAAKPLFLSM-GKNTIYCGG 137 (273)
Q Consensus 72 ~~~~~g~~~~~g~~~g~~~ldapv~G~~~~a~~g~l~--------~~vgG-----~~~~~~~~~~~l~~~-~~~i~~~G~ 137 (273)
.+.+. +..++|+||+++|..+..|... +++|| +++++++++++|+.+ +..++++++
T Consensus 144 ~l~~~----------~~~~~d~~V~~~Pe~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~ 213 (467)
T 2q3e_A 144 IFDAN----------TKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTN 213 (467)
T ss_dssp HHHHT----------CCTTCEEEEEECCCCCCTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEEC
T ss_pred HHHHh----------CCCCCCeEEEeCHHHhhcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecC
Confidence 88653 1346899999999999999875 88999 678899999999999 667899999
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCC--Ccch
Q 024066 138 AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG--GFAS 215 (273)
Q Consensus 138 ~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~--~f~~ 215 (273)
++.|+.+|+++|.+...++++++|++.++++.|+|++++.++++..+. + . ...|.| +|..
T Consensus 214 ~~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~~---~----~-----------~~~~~pg~g~gg 275 (467)
T 2q3e_A 214 TWSSELSKLAANAFLAQRISSINSISALCEATGADVEEVATAIGMDQR---I----G-----------NKFLKASVGFGG 275 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTSTT---T----C-----------SSSCCCCSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCCC---C----C-----------ccccCCCCCCCC
Confidence 999999999999999999999999999999999999999999987532 1 0 011223 3677
Q ss_pred hhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCC-CCCCcHHH
Q 024066 216 KLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG-HDSKDFSC 261 (273)
Q Consensus 216 ~~~~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~G-~g~~d~sa 261 (273)
.++.||++++++.+++.|++ .+.++|+.+.+.+ ++.+++..
T Consensus 276 ~c~~kD~~~l~~~a~~~g~~-----~~~~~~~~~~~~n~~~~~~~~~ 317 (467)
T 2q3e_A 276 SCFQKDVLNLVYLCEALNLP-----EVARYWQQVIDMNDYQRRRFAS 317 (467)
T ss_dssp SSHHHHHHHHHHHHHHTTCH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCc-----hHHHHHHHHHHHHHHhHHHHHH
Confidence 89999999999999999986 3344555554443 33344444
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.4e-23 Score=194.33 Aligned_cols=214 Identities=12% Similarity=0.129 Sum_probs=166.7
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChH--------------HHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHH
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSS--------------HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISA 71 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~--------------av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~ 71 (273)
+.+.++++.+++++||+||+|||++. .+++++. ++.+.+ .++++||++||+.|.+++++.+
T Consensus 73 ~l~~t~~~~~~~~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~---~i~~~l--~~g~iVV~~STv~~gt~~~l~~ 147 (481)
T 2o3j_A 73 NLFFSSDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSR---TIAQYA--GGPKIVVEKSTVPVKAAESIGC 147 (481)
T ss_dssp TEEEESCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHH---HHHHHC--CSCEEEEECSCCCTTHHHHHHH
T ss_pred CEEEECCHHHHhhcCCEEEEecCCccccccccccCCCcHHHHHHHHH---HHHHhC--CCCCEEEECCCCCCCHHHHHHH
Confidence 34567788899999999999999875 3677764 355553 4578999999999999999998
Q ss_pred HHhh-chhhhccCCCCCceEEEecCCCCHHHHhcCce---EEEeecCH-----HHHHHHHHHHHHhcC-CeEEeCCcChH
Q 024066 72 AVSN-CILKEKKDSWENPVMLDAPVSGGVLAAEAGTL---TFMVGGSE-----DAYQAAKPLFLSMGK-NTIYCGGAGNG 141 (273)
Q Consensus 72 ~~~~-~g~~~~~g~~~g~~~ldapv~G~~~~a~~g~l---~~~vgG~~-----~~~~~~~~~l~~~~~-~i~~~G~~g~a 141 (273)
.+.+ .+. ..+ ..+.++.+|....+..+....+ .+++||+. +++++++++|+.++. .++++++++.|
T Consensus 148 ~l~~~~~~--~~~--~d~~v~~~Pe~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~~~a 223 (481)
T 2o3j_A 148 ILREAQKN--NEN--LKFQVLSNPEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSS 223 (481)
T ss_dssp HHHHHTC--------CCEEEEECCCCCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEHHHH
T ss_pred HHHHhhCc--CcC--CceEEEeCcccccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCHHHH
Confidence 8875 310 000 0134566666655554433223 58889975 578999999999986 78899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCC--cchhhHH
Q 024066 142 AAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG--FASKLMA 219 (273)
Q Consensus 142 ~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--f~~~~~~ 219 (273)
+..|+++|.+...++++++|+..+|++.|+|+++++++++.++ ++ ....|.|+ |...++.
T Consensus 224 e~~Kl~~N~~~a~~ia~~nE~~~la~~~Gid~~~v~~~~~~~~---ri---------------~~~~~~pg~g~gg~c~~ 285 (481)
T 2o3j_A 224 ELSKLVANAFLAQRISSINSISAVCEATGAEISEVAHAVGYDT---RI---------------GSKFLQASVGFGGSCFQ 285 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHTST---TT---------------CSSSCCCCSCCCSSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHccCC---CC---------------CCCCCCCCCccCCccHH
Confidence 9999999999999999999999999999999999999998753 11 11234454 5788999
Q ss_pred HHHHHHHHHHHHhCCC--ChHHHHHHHHH
Q 024066 220 KDLNLALASAKEVGVD--CPLTSQAQDIY 246 (273)
Q Consensus 220 KD~~~~~~~a~~~g~~--~~~~~~~~~~~ 246 (273)
||+.++++.|++.|++ +|+++++.+.-
T Consensus 286 KD~~~l~~~A~~~g~~~~~~l~~~~~~~N 314 (481)
T 2o3j_A 286 KDVLSLVYLCESLNLPQVADYWQGVININ 314 (481)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCccchHHHHHHHHH
Confidence 9999999999999999 99999887543
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.8e-23 Score=192.43 Aligned_cols=212 Identities=16% Similarity=0.159 Sum_probs=173.2
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCCh---------HHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhch
Q 024066 7 VPTKETPFEVAEASDVVITMLPSS---------SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCI 77 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~---------~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g 77 (273)
.+.++++++++++||+||+|||+| ..+++++.. +.+.+ .++++||++||++|++++++.+.+.+.
T Consensus 72 l~~ttd~~~a~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~---i~~~l--~~~~iVV~~STv~~gt~~~l~~~l~~~- 145 (478)
T 2y0c_A 72 LRFSTDIEAAVAHGDVQFIAVGTPPDEDGSADLQYVLAAARN---IGRYM--TGFKVIVDKSTVPVGTAERVRAAVAEE- 145 (478)
T ss_dssp EEEECCHHHHHHHCSEEEECCCCCBCTTSSBCCHHHHHHHHH---HHHHC--CSCEEEEECSCCCTTHHHHHHHHHHHH-
T ss_pred EEEECCHHHHhhcCCEEEEEeCCCcccCCCccHHHHHHHHHH---HHHhc--CCCCEEEEeCCcCCCchHHHHHHHHHH-
Confidence 456778999999999999999997 788888853 55543 457899999999999999999988652
Q ss_pred hhhccCCCCCceE-EEecCCCCHHHHhcCce--------EEEeecC-H----HHHHHHHHHHHHhcC--CeEEeCCcChH
Q 024066 78 LKEKKDSWENPVM-LDAPVSGGVLAAEAGTL--------TFMVGGS-E----DAYQAAKPLFLSMGK--NTIYCGGAGNG 141 (273)
Q Consensus 78 ~~~~~g~~~g~~~-ldapv~G~~~~a~~g~l--------~~~vgG~-~----~~~~~~~~~l~~~~~--~i~~~G~~g~a 141 (273)
+ .. + .| +|.+|.++|..+..|.. .+++|++ + +.+++++++|+.+.+ .++++++++.+
T Consensus 146 ~--~~----g-~~~~~~~v~~~Pe~~~eG~~~~~~~~p~~iviG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~a 218 (478)
T 2y0c_A 146 L--AK----R-GGDQMFSVVSNPEFLKEGAAVDDFTRPDRIVIGCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSA 218 (478)
T ss_dssp H--HH----T-TCCCCEEEEECCCCCCTTCHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHTGGGGSSSCCEEEECHHHH
T ss_pred h--cC----C-CCCccEEEEEChhhhcccceeeccCCCCEEEEEECCCcccHHHHHHHHHHHHHHhccCCeEEcCCHHHH
Confidence 0 01 1 23 67788888888888876 6888886 5 688999999999875 68889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCC--cchhhHH
Q 024066 142 AAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG--FASKLMA 219 (273)
Q Consensus 142 ~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--f~~~~~~ 219 (273)
+..|++.|.+...++++++|+..+|++.|+|++++.+.+...+ . +..+.|.|+ +...++.
T Consensus 219 e~~Kl~~N~~~a~~ia~~nE~~~la~~~Gid~~~v~~~i~~~~---r---------------ig~~~~~pG~g~gg~c~~ 280 (478)
T 2y0c_A 219 EFTKYAANAMLATRISFMNELANLADRFGADIEAVRRGIGSDP---R---------------IGYHFLYAGCGYGGSCFP 280 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTST---T---------------TCSTTCCCSSCCCSSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCC---c---------------cCcccCCCCcccccCcCH
Confidence 9999999999999999999999999999999999998886421 0 112234444 4556789
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 024066 220 KDLNLALASAKEVGVDCPLTSQAQDIYAKL 249 (273)
Q Consensus 220 KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a 249 (273)
||+..+.+.+++.|+++|+++++.++++..
T Consensus 281 kD~~~l~~~A~~~gv~~pl~~~v~~in~~~ 310 (478)
T 2y0c_A 281 KDVEALIRTADEHGQSLQILKAVSSVNATQ 310 (478)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Confidence 999999999999999999999999988654
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6.5e-22 Score=183.62 Aligned_cols=212 Identities=13% Similarity=0.121 Sum_probs=168.5
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHH---------HHHHHcCCCCcccCCCCCC---CeEEEEcCCCCHHH-HHHHHHHH
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSH---------VLDVYNGPNGLLQGGNSVR---PQLLIDSSTIDPQT-SRNISAAV 73 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~a---------v~~v~~~~~g~l~~~~~~~---g~iiid~ST~~P~~-~~~l~~~~ 73 (273)
.+.++++.+++++||+||+|||++.. +++++.. +.+.+ .+ +++||++||+.|.+ .+.+.+.+
T Consensus 64 l~~t~~~~~~~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~---i~~~l--~~~~~~~iVV~~Stv~~g~t~~~l~~~l 138 (436)
T 1mv8_A 64 LSGTTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCRE---IGFAI--REKSERHTVVVRSTVLPGTVNNVVIPLI 138 (436)
T ss_dssp EEEESCHHHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHH---HHHHH--TTCCSCCEEEECSCCCTTHHHHTHHHHH
T ss_pred eEEeCCHHHHhccCCEEEEEcCCCcccCCCcchHHHHHHHHH---HHHHh--cccCCCcEEEEeCCcCCCchHHHHHHHH
Confidence 56678899999999999999999875 7777643 44432 24 68999999999999 77777777
Q ss_pred hhchhhhccCCCCCceE-EEecCCCCHHHHhcCce--------EEEeecC-HHHHHHHHHHHHHhcCCeEEeCCcChHHH
Q 024066 74 SNCILKEKKDSWENPVM-LDAPVSGGVLAAEAGTL--------TFMVGGS-EDAYQAAKPLFLSMGKNTIYCGGAGNGAA 143 (273)
Q Consensus 74 ~~~g~~~~~g~~~g~~~-ldapv~G~~~~a~~g~l--------~~~vgG~-~~~~~~~~~~l~~~~~~i~~~G~~g~a~~ 143 (273)
.+. .+ ..+ +|.+|.++|..+..|.. .+++|++ +++.++++++++.++.++++ ++++.+..
T Consensus 139 ~~~-----~g----~~~~~~~~v~~~Pe~~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~~l~~~~~~~v~~-~~~~~ae~ 208 (436)
T 1mv8_A 139 EDC-----SG----KKAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPIIR-KTVEVAEM 208 (436)
T ss_dssp HHH-----HS----CCBTTTBEEEECCCCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTSSSCEEE-EEHHHHHH
T ss_pred HHh-----cC----cccCCcEEEEECcccccccccchhccCCCEEEEEcCCHHHHHHHHHHHhccCCCEEc-CCHHHHHH
Confidence 642 01 233 56677777777777775 6888886 88899999999999986554 78999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCC--CcchhhHHHH
Q 024066 144 AKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG--GFASKLMAKD 221 (273)
Q Consensus 144 ~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~--~f~~~~~~KD 221 (273)
.|++.|.+...++++++|+..++++.|++++++.+.+.... .+ . ...++|.| +|...++.||
T Consensus 209 ~Kl~~N~~~a~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~---r~----~---------~~~~~~~pg~g~gg~~~~kD 272 (436)
T 1mv8_A 209 IKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDH---KL----N---------LSRYYMRPGFAFGGSCLPKD 272 (436)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHTTCT---TT----T---------TSSTTCSCCSCCCSSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCC---CC----C---------CcccCCCCcccccCcCcHhh
Confidence 99999999999999999999999999999999999887521 01 0 00233444 5788899999
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 024066 222 LNLALASAKEVGVDCPLTSQAQDIYAKL 249 (273)
Q Consensus 222 ~~~~~~~a~~~g~~~~~~~~~~~~~~~a 249 (273)
+..+.+.+++.|+++|+++++.++.+..
T Consensus 273 ~~~l~~~a~~~g~~~pl~~~v~~in~~~ 300 (436)
T 1mv8_A 273 VRALTYRASQLDVEHPMLGSLMRSNSNQ 300 (436)
T ss_dssp HHHHHHHHHHTTCCCTTGGGHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHhHh
Confidence 9999999999999999999998876543
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=7.1e-21 Score=174.82 Aligned_cols=203 Identities=18% Similarity=0.123 Sum_probs=160.6
Q ss_pred CCCCCHHHHHhcCCEEEEeCCChH----------HHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhch
Q 024066 8 PTKETPFEVAEASDVVITMLPSSS----------HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCI 77 (273)
Q Consensus 8 ~~~~s~~e~~~~advvi~~v~~~~----------av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g 77 (273)
+.++++.+++++||+||+|||++. .+++++.. +.+ + .++++||++||+.|.+++++.+.+.+
T Consensus 62 ~~t~~~~~~~~~aDvviiavpt~~~~~~~~~dl~~v~~v~~~---i~~-l--~~~~iVV~~ST~~~g~~~~l~~~~~~-- 133 (402)
T 1dlj_A 62 KATLDSKAAYKEAELVIIATPTNYNSRINYFDTQHVETVIKE---VLS-V--NSHATLIIKSTIPIGFITEMRQKFQT-- 133 (402)
T ss_dssp EEESCHHHHHHHCSEEEECCCCCEETTTTEECCHHHHHHHHH---HHH-H--CSSCEEEECSCCCTTHHHHHHHHTTC--
T ss_pred EEeCCHHHHhcCCCEEEEecCCCcccCCCCccHHHHHHHHHH---HHh-h--CCCCEEEEeCCCCccHHHHHHHHhCC--
Confidence 445688899999999999999984 68888753 544 3 35689999999999999999987642
Q ss_pred hhhccCCCCCceEEEecCCCCHHHHhcCceE---EEeecCH-------HHHHHHHHHHHH-hcC-C-eEEeCCcChHHHH
Q 024066 78 LKEKKDSWENPVMLDAPVSGGVLAAEAGTLT---FMVGGSE-------DAYQAAKPLFLS-MGK-N-TIYCGGAGNGAAA 144 (273)
Q Consensus 78 ~~~~~g~~~g~~~ldapv~G~~~~a~~g~l~---~~vgG~~-------~~~~~~~~~l~~-~~~-~-i~~~G~~g~a~~~ 144 (273)
-.++.+|....+..+..+.+. +++||++ +..+++.++|.. +.. . ++++++++.|+..
T Consensus 134 ----------~~v~~~Pe~~~~G~a~~~~~~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~ 203 (402)
T 1dlj_A 134 ----------DRIIFSPEFLRESKALYDNLYPSRIIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAV 203 (402)
T ss_dssp ----------SCEEECCCCCCTTSTTHHHHSCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEECHHHHHHH
T ss_pred ----------CeEEECCccccCcchhhcccCCCEEEEeCCCcccchhHHHHHHHHHHHhhhhccCCceEEecChHHHHHH
Confidence 257899998877765544443 8899987 556667777764 332 3 5788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCC--CcchhhHHHHH
Q 024066 145 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG--GFASKLMAKDL 222 (273)
Q Consensus 145 Kl~~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~--~f~~~~~~KD~ 222 (273)
|+++|.+...++++++|++.+|++.|+|+++++++++..+ ++ . ...+.| +|...++.||+
T Consensus 204 Kl~~N~~~a~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~---ri----~-----------~~~~~pg~g~gg~c~~kD~ 265 (402)
T 1dlj_A 204 KLFANTYLALRVAYFNELDTYAESRKLNSHMIIQGISYDD---RI----G-----------MHYNNPSFGYGGYSLPKDT 265 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTST---TT----C-----------SSSCCCCSSCCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhccCC---CC----C-----------cCCCCCCCccCCccHHhhH
Confidence 9999999999999999999999999999999999998653 11 1 112334 57888999999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHH
Q 024066 223 NLALASAKEVGVDCPLTSQAQDIYAK 248 (273)
Q Consensus 223 ~~~~~~a~~~g~~~~~~~~~~~~~~~ 248 (273)
.++++.++ |+++|+++++++.-+.
T Consensus 266 ~~l~~~a~--~~~~~l~~~~~~~N~~ 289 (402)
T 1dlj_A 266 KQLLANYN--NIPQTLIEAIVSSNNV 289 (402)
T ss_dssp HHHHHHHT--TSSCSHHHHHHHHHHH
T ss_pred HHHHHHhc--CCChHHHHHHHHHHHH
Confidence 99998884 8999999999876543
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.8e-17 Score=150.58 Aligned_cols=215 Identities=14% Similarity=0.136 Sum_probs=157.0
Q ss_pred CCCCCHHHHHhcCCEEEEeCCChH---------HHHHHHcCCCCcccCCC-CCCCeEEEEcCCCCHHHHHHHHHHHhhch
Q 024066 8 PTKETPFEVAEASDVVITMLPSSS---------HVLDVYNGPNGLLQGGN-SVRPQLLIDSSTIDPQTSRNISAAVSNCI 77 (273)
Q Consensus 8 ~~~~s~~e~~~~advvi~~v~~~~---------av~~v~~~~~g~l~~~~-~~~g~iiid~ST~~P~~~~~l~~~~~~~g 77 (273)
++++++.++++.||++|+|||+|. .++++... +.+.+. ..++++||..||+.|.+++++...+.+.
T Consensus 86 ~~tt~~~~ai~~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~---I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~- 161 (444)
T 3vtf_A 86 SFAESAEEAVAATDATFIAVGTPPAPDGSADLRYVEAAARA---VGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAE- 161 (444)
T ss_dssp EECSSHHHHHHTSSEEEECCCCCBCTTSSBCCHHHHHHHHH---HHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHT-
T ss_pred eEEcCHHHHHhcCCceEEEecCCCCCCCCCCcHHHHHHHHH---HHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHH-
Confidence 567789999999999999999873 34444432 222210 1246899999999999999987655332
Q ss_pred hhhccCCCCCceEEEecCCCCHHHHhcC---ceEEEeec-CHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHH
Q 024066 78 LKEKKDSWENPVMLDAPVSGGVLAAEAG---TLTFMVGG-SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 153 (273)
Q Consensus 78 ~~~~~g~~~g~~~ldapv~G~~~~a~~g---~l~~~vgG-~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~ 153 (273)
+++ ...+...-+|-.-.+..+... .-.+++|+ ++.+.+.++.+++.+...+++ .++..|++.|++.|.+..
T Consensus 162 ---~~~-~~~f~v~~~PErl~eG~a~~d~~~~~riViG~~~~~a~~~~~~ly~~~~~~~~~-~~~~~AE~~Kl~eN~~ra 236 (444)
T 3vtf_A 162 ---EAG-GVKFSVASNPEFLREGSALEDFFKPDRIVIGAGDERAASFLLDVYKAVDAPKLV-MKPREAELVKYASNVFLA 236 (444)
T ss_dssp ---TTT-TCCCEEEECCCCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHTTTSCSCEEE-ECHHHHHHHHHHHHHHHH
T ss_pred ---hCC-CCCceeecCcccccCCccccccccCCcEEEcCCCHHHHHHHHHHHhccCCCEEE-echhHHHHHHHHHHHHHH
Confidence 111 123566677765444333221 12366666 566888899999998877664 467899999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCccccc-ccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHh
Q 024066 154 VSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSS-DSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEV 232 (273)
Q Consensus 154 ~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~ 232 (273)
.++++++|...+|++.|+|.+++++.++... ++. ..+. ..++|...|+.||...+...+++.
T Consensus 237 vnIa~~NEla~ice~~GiDv~eV~~a~~~d~---rig~~~l~--------------PG~G~GG~CipkD~~~L~~~a~~~ 299 (444)
T 3vtf_A 237 LKISFANEVGLLAKRLGVDTYRVFEAVGLDK---RIGRHYFG--------------AGLGFGGSCFPKDTLAFIRFGESL 299 (444)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHTST---TSCSTTCC--------------CSSCCCTTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHhccCC---CCCCCCCC--------------CCCCCCCcccCcCHHHHHHHHHhc
Confidence 9999999999999999999999999997532 110 0000 123567889999999999999999
Q ss_pred CCCChHHHHHHHHHHH
Q 024066 233 GVDCPLTSQAQDIYAK 248 (273)
Q Consensus 233 g~~~~~~~~~~~~~~~ 248 (273)
|+++++++++++.-+.
T Consensus 300 g~~~~li~a~~~iN~~ 315 (444)
T 3vtf_A 300 GLEMAISKAVLRVNEY 315 (444)
T ss_dssp TCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHhhHHHHHH
Confidence 9999999998875543
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-17 Score=142.89 Aligned_cols=141 Identities=16% Similarity=0.213 Sum_probs=111.0
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCc-ccCCCCCCCeEEEEcC-----------CCCHHHHHHHHHHH
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGL-LQGGNSVRPQLLIDSS-----------TIDPQTSRNISAAV 73 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~-l~~~~~~~g~iiid~S-----------T~~P~~~~~l~~~~ 73 (273)
|...+.|+.|++++||+||+|||++...+ ++.. + .+. . ++++|||+| |++|++.+.+++.+
T Consensus 77 ~~~~~~~~~e~~~~aDvVilavp~~~~~~-~~~~---i~~~~--l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l 149 (245)
T 3dtt_A 77 PHVHLAAFADVAAGAELVVNATEGASSIA-ALTA---AGAEN--L-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQI 149 (245)
T ss_dssp TTCEEEEHHHHHHHCSEEEECSCGGGHHH-HHHH---HCHHH--H-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHH
T ss_pred CceeccCHHHHHhcCCEEEEccCcHHHHH-HHHH---hhhhh--c-CCCEEEECCCCCCCcCCccccccCCCCccHHHHH
Confidence 66677899999999999999999886654 4432 2 222 1 468999999 88888877777776
Q ss_pred hhchhhhccCCCCCceEEEecCCCCHHHHhcCceEEEeecC-HHHHHHHHHHHHHhcC-CeEEeCCcChHHHHHHHHHHH
Q 024066 74 SNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGS-EDAYQAAKPLFLSMGK-NTIYCGGAGNGAAAKICNNLT 151 (273)
Q Consensus 74 ~~~g~~~~~g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~-~~~~~~~~~~l~~~~~-~i~~~G~~g~a~~~Kl~~n~~ 151 (273)
+++ +.... --.++.|+|+|+++++..+..+++.++++|+ ++++++++++|+.++. .++|+|+.|+|+.+|+++|++
T Consensus 150 ~~~-l~~~~-vv~~~~~~~a~v~~~~~~a~~g~~~~~v~g~d~~~~~~v~~ll~~~g~~~~~~~G~~g~a~~~k~~~~~~ 227 (245)
T 3dtt_A 150 QRT-FPEAK-VVKTLNTMNASLMVDPGRAAGGDHSVFVSGNDAAAKAEVATLLKSLGHQDVIDLGDITTARGAEMLLPVW 227 (245)
T ss_dssp HHH-STTSE-EEECSTTSCHHHHHCGGGTGGGCCCEEEECSCHHHHHHHHHHHHHTTCCCEEEEESGGGHHHHHTTHHHH
T ss_pred HHH-CCCCe-EEEeecccCHHHhcCccccCCCCeeEEEECCCHHHHHHHHHHHHHcCCCceeccCcHHHHHHhhhhHHHH
Confidence 652 00000 0013789999999999999889998998775 7899999999999996 479999999999999999998
Q ss_pred HHHH
Q 024066 152 MAVS 155 (273)
Q Consensus 152 ~~~~ 155 (273)
...+
T Consensus 228 ~~l~ 231 (245)
T 3dtt_A 228 IRLW 231 (245)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8775
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=99.66 E-value=8.4e-16 Score=132.51 Aligned_cols=206 Identities=14% Similarity=0.119 Sum_probs=153.0
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhchhhhccCC
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDS 84 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~-ST~~P~~~~~l~~~~~~~g~~~~~g~ 84 (273)
|++.++++.|+++++|+||+|+| +..+++++.. +. .+++||+. +++++++ +.+.+..
T Consensus 47 g~~~~~~~~~~~~~~D~Vi~~v~-~~~~~~v~~~---l~------~~~~vv~~~~~~~~~~---l~~~~~~--------- 104 (259)
T 2ahr_A 47 ALPYAMSHQDLIDQVDLVILGIK-PQLFETVLKP---LH------FKQPIISMAAGISLQR---LATFVGQ--------- 104 (259)
T ss_dssp TCCBCSSHHHHHHTCSEEEECSC-GGGHHHHHTT---SC------CCSCEEECCTTCCHHH---HHHHHCT---------
T ss_pred CCEeeCCHHHHHhcCCEEEEEeC-cHhHHHHHHH---hc------cCCEEEEeCCCCCHHH---HHHhcCC---------
Confidence 78888899999999999999999 6677888753 21 34689998 5777764 3333321
Q ss_pred CCCceEEEecCCCCHHHHhcCceEEEeec--CHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHH--HHHHHHHHHHHHH
Q 024066 85 WENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKIC--NNLTMAVSMLGVS 160 (273)
Q Consensus 85 ~~g~~~ldapv~G~~~~a~~g~l~~~vgG--~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~--~n~~~~~~~~~~~ 160 (273)
+..+++ ++.+.|.....|.+.++.|+ +++.+++++++|+.+| .++++++......+|+. .|.+....+..++
T Consensus 105 --~~~~v~-~~p~~~~~~~~g~~~i~~~~~~~~~~~~~~~~ll~~~G-~~~~~~~~~~d~~~al~g~~~~~~~~~~~~la 180 (259)
T 2ahr_A 105 --DLPLLR-IMPNMNAQILQSSTALTGNALVSQELQARVRDLTDSFG-STFDISEKDFDTFTALAGSSPAYIYLFIEALA 180 (259)
T ss_dssp --TSCEEE-EECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHHHTTE-EEEECCGGGHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred --CCCEEE-EcCCchHHHcCceEEEEcCCCCCHHHHHHHHHHHHhCC-CEEEecHHHccHHHHHhccHHHHHHHHHHHHH
Confidence 246777 78888888888877777777 7889999999999999 58999988888888885 3445555555666
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhcCCccc-ccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHH
Q 024066 161 EALTLGQSLGISASTLTKILNSSSARCW-SSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLT 239 (273)
Q Consensus 161 Ea~~la~~~Gl~~~~~~~~l~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~~~ 239 (273)
|+ +.+.|++.+.+++++..+..+++ +.....+.|.++ ....++|+|++....||++ +.|++..+.
T Consensus 181 ~~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l----~~~~~~p~~~~~~~~~~l~-------~~g~~~~~~ 246 (259)
T 2ahr_A 181 KA---GVKNGIPKAKALEIVTQTVLASASNLKTSSQSPHDF----IDAICSPGGTTIAGLMELE-------RLGLTATVS 246 (259)
T ss_dssp HH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHSSSCHHHH----HHHHCCTTSHHHHHHHHHH-------HHTHHHHHH
T ss_pred HH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHH----HHhCCCCChhHHHHHHHHH-------HCChHHHHH
Confidence 55 78899999999999988776665 322222112222 1334678899999889884 578888899
Q ss_pred HHHHHHHHHHHH
Q 024066 240 SQAQDIYAKLCE 251 (273)
Q Consensus 240 ~~~~~~~~~a~~ 251 (273)
+++.+.++++.+
T Consensus 247 ~a~~~~~~r~~~ 258 (259)
T 2ahr_A 247 SAIDKTIDKAKS 258 (259)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999988888754
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-15 Score=131.66 Aligned_cols=201 Identities=11% Similarity=0.088 Sum_probs=147.2
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhchhhhccCC
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDS 84 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~-ST~~P~~~~~l~~~~~~~g~~~~~g~ 84 (273)
|++...++.+++ ++|+||+|+| +.++++++.. +.+ . +++||++ |+++| +++.+.+..
T Consensus 45 g~~~~~~~~~~~-~~D~vi~~v~-~~~~~~v~~~---l~~----~-~~ivv~~~~g~~~---~~l~~~~~~--------- 102 (263)
T 1yqg_A 45 GVETSATLPELH-SDDVLILAVK-PQDMEAACKN---IRT----N-GALVLSVAAGLSV---GTLSRYLGG--------- 102 (263)
T ss_dssp CCEEESSCCCCC-TTSEEEECSC-HHHHHHHHTT---CCC----T-TCEEEECCTTCCH---HHHHHHTTS---------
T ss_pred CCEEeCCHHHHh-cCCEEEEEeC-chhHHHHHHH---hcc----C-CCEEEEecCCCCH---HHHHHHcCC---------
Confidence 777778888888 9999999999 8888998863 432 2 5799998 78887 345554431
Q ss_pred CCCceEEEecCCCCHHHHhcCceEEEeec--CHHHHHHHHHHHHHhcCCeEEeC-C---------cChHHHHHHHHHHHH
Q 024066 85 WENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKPLFLSMGKNTIYCG-G---------AGNGAAAKICNNLTM 152 (273)
Q Consensus 85 ~~g~~~ldapv~G~~~~a~~g~l~~~vgG--~~~~~~~~~~~l~~~~~~i~~~G-~---------~g~a~~~Kl~~n~~~ 152 (273)
+.+++++ +.+.|.....|.+.++.++ +++.+++++++|+.++.++ +++ + .|.+. .+.
T Consensus 103 --~~~~v~~-~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~l~~~~g~~~-~~~~~~~~~~~~al~g~~~-------~~~ 171 (263)
T 1yqg_A 103 --TRRIVRV-MPNTPGKIGLGVSGMYAEAEVSETDRRIADRIMKSVGLTV-WLDDEEKMHGITGISGSGP-------AYV 171 (263)
T ss_dssp --CCCEEEE-ECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHHHTTEEEE-ECSSTTHHHHHHHHTTSHH-------HHH
T ss_pred --CCcEEEE-cCCHHHHHcCceEEEEcCCCCCHHHHHHHHHHHHhCCCEE-EeCChhhccHHHHHHccHH-------HHH
Confidence 2578998 8888888888887888888 7889999999999999865 888 5 33332 223
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCccc-ccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHH
Q 024066 153 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCW-SSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKE 231 (273)
Q Consensus 153 ~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~ 231 (273)
...+..+.|+ +++.|++++.+.+++..+..+++ +......-|.. +.++.++|+|++....||+ ++
T Consensus 172 ~~~~~~l~e~---~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~l-------~~ 237 (263)
T 1yqg_A 172 FYLLDALQNA---AIRQGFDMAEARALSLATFKGAVALAEQTGEDFEK----LQKNVTSKGGTTHEAVEAF-------RR 237 (263)
T ss_dssp HHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHHCCCHHH----HHHHTCCTTSHHHHHHHHH-------HH
T ss_pred HHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHH----HHHhcCCCChhHHHHHHHH-------HH
Confidence 3444555565 88999999999998876654444 22211111111 2345677888888888777 66
Q ss_pred hCCCChHHHHHHHHHHHHHHCC
Q 024066 232 VGVDCPLTSQAQDIYAKLCENG 253 (273)
Q Consensus 232 ~g~~~~~~~~~~~~~~~a~~~G 253 (273)
.|++.++.+++.+.|+++.+.|
T Consensus 238 ~~~~~~~~~a~~~~~~~~~~~~ 259 (263)
T 1yqg_A 238 HRVAEAISEGVCACVRRSQEME 259 (263)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999998765
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-15 Score=132.95 Aligned_cols=218 Identities=11% Similarity=0.074 Sum_probs=149.3
Q ss_pred CHHHHHh---cCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCc
Q 024066 12 TPFEVAE---ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENP 88 (273)
Q Consensus 12 s~~e~~~---~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~ 88 (273)
++.++.+ ++|+||+|+|++ ++++++.. +.+.+ .++++||++++.-+ ..+.+.+.+.+. + ...+.
T Consensus 64 ~~~~~~~~~~~~d~vi~~v~~~-~~~~v~~~---l~~~l--~~~~~iv~~~~g~~-~~~~l~~~~~~~----~--vi~g~ 130 (316)
T 2ew2_A 64 SPEEIDHQNEQVDLIIALTKAQ-QLDAMFKA---IQPMI--TEKTYVLCLLNGLG-HEDVLEKYVPKE----N--ILVGI 130 (316)
T ss_dssp CGGGCCTTSCCCSEEEECSCHH-HHHHHHHH---HGGGC--CTTCEEEECCSSSC-THHHHTTTSCGG----G--EEEEE
T ss_pred cchhhcccCCCCCEEEEEeccc-cHHHHHHH---HHHhc--CCCCEEEEecCCCC-cHHHHHHHcCCc----c--EEEEE
Confidence 4445554 899999999965 67888753 44432 34679999987443 344555544321 0 00013
Q ss_pred eEEEecCCCC--HHHHhcCceEEEe--ecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHH------------
Q 024066 89 VMLDAPVSGG--VLAAEAGTLTFMV--GGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM------------ 152 (273)
Q Consensus 89 ~~ldapv~G~--~~~a~~g~l~~~v--gG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~------------ 152 (273)
.+.+++++|. +.....|.+.+.. +++++.+++++++|+.++.++++.++.+.+...|++.|.++
T Consensus 131 ~~~~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~~~~ll~~~g~~~~~~~d~~~~~~~Kl~~N~~~~~~~al~~~~~~ 210 (316)
T 2ew2_A 131 TMWTAGLEGPGRVKLLGDGEIELENIDPSGKKFALEVVDVFQKAGLNPSYSSNVRYSIWRKACVNGTLNGLCTILDCNIA 210 (316)
T ss_dssp ECCCCEEEETTEEEECSCCCEEEEESSGGGHHHHHHHHHHHHHTTCCEEECTTHHHHHHHHHHHHTTHHHHHHHHTCCHH
T ss_pred eeeeeEEcCCCEEEEecCCcEEEeecCCCccHHHHHHHHHHHhCCCCcEEchhHHHHHHHHHHHhhhHHHHHHHhCCcHH
Confidence 3455666652 3334556665543 55778899999999999998888888999999999999653
Q ss_pred ---------HHHHHHHHHHHHHHHHcCCCH--HHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCC-CCCcchhhHHH
Q 024066 153 ---------AVSMLGVSEALTLGQSLGISA--STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNY-GGGFASKLMAK 220 (273)
Q Consensus 153 ---------~~~~~~~~Ea~~la~~~Gl~~--~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~~~f~~~~~~K 220 (273)
.....++.|++.++++.|+++ +.+.+.+............ .+.+. .|+ ..++..+ ..|
T Consensus 211 ~~~~~~~~~~~~~~~~~E~~~la~~~G~~~~~~~~~~~~~~~~~~~~~~~~---~~sm~------~d~~~~g~~~E-~~~ 280 (316)
T 2ew2_A 211 EFGALPVSESLVKTLISEFAAVAEKEAIYLDQAEVYTHIVQTYDPNGIGLH---YPSMY------QDLIKNHRLTE-IDY 280 (316)
T ss_dssp HHHTSTTHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCTTTTTTS---CCHHH------HHHTTTCCCCS-GGG
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccccCCCC---CcHHH------HHHHHcCCcch-HHH
Confidence 456788999999999999986 5677777653211100111 11111 244 4455556 789
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHC
Q 024066 221 DLNLALASAKEVGVDCPLTSQAQDIYAKLCEN 252 (273)
Q Consensus 221 D~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~ 252 (273)
|+..+.+++++.|+++|+.+.+.++++.....
T Consensus 281 ~~~~~~~~a~~~gv~~P~~~~~~~~~~~~~~~ 312 (316)
T 2ew2_A 281 INGAVWRKGQKYNVATPFCAMLTQLVHGKEEL 312 (316)
T ss_dssp THHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999877553
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-15 Score=132.42 Aligned_cols=205 Identities=10% Similarity=0.069 Sum_probs=140.1
Q ss_pred HHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEEe
Q 024066 14 FEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 93 (273)
Q Consensus 14 ~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~~lda 93 (273)
.++++++|+||+|+|++. +++++.. +.+.+ .++++||++++ .++..+.+.+.+.+. -. |..+..+
T Consensus 58 ~~~~~~~d~vi~~v~~~~-~~~v~~~---l~~~l--~~~~~vv~~~~-g~~~~~~l~~~~~~~----~~----g~~~~~~ 122 (291)
T 1ks9_A 58 PDFLATSDLLLVTLKAWQ-VSDAVKS---LASTL--PVTTPILLIHN-GMGTIEELQNIQQPL----LM----GTTTHAA 122 (291)
T ss_dssp HHHHHTCSEEEECSCGGG-HHHHHHH---HHTTS--CTTSCEEEECS-SSCTTGGGTTCCSCE----EE----EEECCEE
T ss_pred ccccCCCCEEEEEecHHh-HHHHHHH---HHhhC--CCCCEEEEecC-CCCcHHHHHHhcCCe----EE----EEEeEcc
Confidence 467889999999999874 6778753 44442 34578898865 344444444433210 00 1232222
Q ss_pred cCCCC-HHHHhcCceEEEe-ecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHH------------------H
Q 024066 94 PVSGG-VLAAEAGTLTFMV-GGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM------------------A 153 (273)
Q Consensus 94 pv~G~-~~~a~~g~l~~~v-gG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~------------------~ 153 (273)
.+.|. +..+..|.+.+.. +++++.+++++++|+.++.++++.++++.+...|++.|..+ .
T Consensus 123 ~~~~p~~~~~~~g~~~i~~~~~~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~n~~tal~~~~~g~~~~~~~ 202 (291)
T 1ks9_A 123 RRDGNVIIHVANGITHIGPARQQDGDYSYLADILQTVLPDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQ 202 (291)
T ss_dssp EEETTEEEEEECCCEEEEESSGGGTTCTHHHHHHHTTSSCEEECTTHHHHHHHHHHHHHHHHHHHHHTTCCGGGGGGCHH
T ss_pred EEcCCEEEEecccceEEccCCCCcchHHHHHHHHHhcCCCCeecHHHHHHHHHHHeeeeeecHHHHHHCCCchHHHhHHH
Confidence 23332 4456667766655 56667889999999999999999999999999999999988 6
Q ss_pred HHHHHHHHHHHHHHHcCCCH--HHH----HHHHhhcC-CcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHH
Q 024066 154 VSMLGVSEALTLGQSLGISA--STL----TKILNSSS-ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLAL 226 (273)
Q Consensus 154 ~~~~~~~Ea~~la~~~Gl~~--~~~----~~~l~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~ 226 (273)
....++.|++.++++.|+++ +.+ .+++..+. ..|++. .|+..++..+.- +++.+++
T Consensus 203 ~~~~~~~E~~~va~a~G~~~~~~~~~~~~~~~~~~~~~~~ssm~----------------~d~~~g~~~e~~-~~~g~~~ 265 (291)
T 1ks9_A 203 EIMQICEEVAAVIEREGHHTSAEDLRDYVMQVIDATAENISSML----------------QDIRALRHTEID-YINGFLL 265 (291)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTTTCCCHHH----------------HHHHTTCCCSGG-GTHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCCCChHH----------------HHHHcCCccHHH-HHHHHHH
Confidence 78899999999999999986 454 34444321 122111 122222222322 5688999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHH
Q 024066 227 ASAKEVGVDCPLTSQAQDIYAKLC 250 (273)
Q Consensus 227 ~~a~~~g~~~~~~~~~~~~~~~a~ 250 (273)
+++++.|+++|+.+.+.++|+...
T Consensus 266 ~~a~~~gv~~P~~~~~~~~~~~~e 289 (291)
T 1ks9_A 266 RRARAHGIAVPENTRLFEMVKRKE 289 (291)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999998654
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-15 Score=133.46 Aligned_cols=148 Identities=14% Similarity=0.134 Sum_probs=114.0
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEE-EEcCCCCHHHHHHHHHHHhhchhhhccCC
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDS 84 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~ii-id~ST~~P~~~~~l~~~~~~~g~~~~~g~ 84 (273)
|++.++|+++ +++||+||.|||++.++++++++. +.. . ++.++ .|+||++|....+..+.-.. ..
T Consensus 61 ~i~~~~~~~~-~~~aDlVieavpe~~~vk~~l~~~---l~~--~-~~~IlasntSti~~~~~a~~~~~~~r-----~~-- 126 (293)
T 1zej_A 61 KIEFTTTLEK-VKDCDIVMEAVFEDLNTKVEVLRE---VER--L-TNAPLCSNTSVISVDDIAERLDSPSR-----FL-- 126 (293)
T ss_dssp GEEEESSCTT-GGGCSEEEECCCSCHHHHHHHHHH---HHT--T-CCSCEEECCSSSCHHHHHTTSSCGGG-----EE--
T ss_pred CeEEeCCHHH-HcCCCEEEEcCcCCHHHHHHHHHH---Hhc--C-CCCEEEEECCCcCHHHHHHHhhcccc-----eE--
Confidence 6777888887 899999999999999999888652 332 2 45566 58999999855442221111 11
Q ss_pred CCCceEEEecCCCCHHHHhcCceEEEeec---CHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHH
Q 024066 85 WENPVMLDAPVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSE 161 (273)
Q Consensus 85 ~~g~~~ldapv~G~~~~a~~g~l~~~vgG---~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~E 161 (273)
|.+|++ |+.++ .+..++.| +++++++++++++.+|+.++++|+. |++||++. ..++|
T Consensus 127 --G~Hf~~-Pv~~~-------~lveiv~g~~t~~~~~~~~~~l~~~lGk~~v~v~d~------fi~Nrll~----~~~~E 186 (293)
T 1zej_A 127 --GVHWMN-PPHVM-------PLVEIVISRFTDSKTVAFVEGFLRELGKEVVVCKGQ------SLVNRFNA----AVLSE 186 (293)
T ss_dssp --EEEECS-STTTC-------CEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESS------CHHHHHHH----HHHHH
T ss_pred --eEEecC-ccccC-------CEEEEECCCCCCHHHHHHHHHHHHHcCCeEEEeccc------ccHHHHHH----HHHHH
Confidence 378998 77654 45555555 8899999999999999999999975 88888865 57999
Q ss_pred HHHHHHHcCCCHHHHHHHHhhcCCccc
Q 024066 162 ALTLGQSLGISASTLTKILNSSSARCW 188 (273)
Q Consensus 162 a~~la~~~Gl~~~~~~~~l~~~~~~s~ 188 (273)
++.++++ |++++++.++++.+.+.+|
T Consensus 187 A~~l~~~-Gv~~e~id~~~~~g~g~~~ 212 (293)
T 1zej_A 187 ASRMIEE-GVRAEDVDRVWKHHLGLLY 212 (293)
T ss_dssp HHHHHHH-TCCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHh-CCCHHHHHHHHHhcCCCCC
Confidence 9999999 9999999999987766554
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.8e-16 Score=139.17 Aligned_cols=226 Identities=15% Similarity=0.138 Sum_probs=147.9
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhchhhhccCCC
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNCILKEKKDSW 85 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~S-T~~P~~~~~l~~~~~~~g~~~~~g~~ 85 (273)
++.++++.+ ++++|+||+|||+ .++++++.+ +.+ ++++||+++ +++|++.+.+++.+.+.
T Consensus 69 ~~~~~~~~~-~~~aDvVil~vk~-~~~~~v~~~---l~~-----~~~~vv~~~nGi~~~~~~~l~~~~~~~--------- 129 (335)
T 1z82_A 69 VRATNDLEE-IKKEDILVIAIPV-QYIREHLLR---LPV-----KPSMVLNLSKGIEIKTGKRVSEIVEEI--------- 129 (335)
T ss_dssp SEEESCGGG-CCTTEEEEECSCG-GGHHHHHTT---CSS-----CCSEEEECCCCCCTTTCCCHHHHHHHH---------
T ss_pred EEEeCCHHH-hcCCCEEEEECCH-HHHHHHHHH---hCc-----CCCEEEEEeCCCCCCccCcHHHHHHHH---------
Confidence 566788999 8999999999995 788999864 321 457999999 57887777788877642
Q ss_pred CCceEEEecCCCCHHHH---hcCceE-EEeecCHHHHHHHHHHHHHhcCCeEEeCCc-----------------ChHHHH
Q 024066 86 ENPVMLDAPVSGGVLAA---EAGTLT-FMVGGSEDAYQAAKPLFLSMGKNTIYCGGA-----------------GNGAAA 144 (273)
Q Consensus 86 ~g~~~ldapv~G~~~~a---~~g~l~-~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~-----------------g~a~~~ 144 (273)
.. .++++.++|..+ ..|.+. +.+|+++ +++++++|+..+.++++.++. |....+
T Consensus 130 --~~-~~~~~~~~P~~~~~~~~g~~~~~~~g~~~--~~~~~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~g~ 204 (335)
T 1z82_A 130 --LG-CPYAVLSGPSHAEEVAKKLPTAVTLAGEN--SKELQKRISTEYFRVYTCEDVVGVEIAGALKNVIAIAAGILDGF 204 (335)
T ss_dssp --TC-CCEEEEESSCCHHHHHTTCCEEEEEEETT--HHHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --cC-CceEEEECCccHHHHhCCCceEEEEEehh--HHHHHHHhCCCCEEEEecCchHHHHHHHHHHhHHHHHHHHHhcC
Confidence 11 234444444332 246543 3444443 789999999988877776653 122334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC----CcccccccCCCCCCcccCCCCCCCCCC------Ccc
Q 024066 145 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS----ARCWSSDSYNPVPGVMEGVPASRNYGG------GFA 214 (273)
Q Consensus 145 Kl~~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~----~~s~~~~~~~~~~~~~~~~~~~~~~~~------~f~ 214 (273)
|+.+|.+......++.|++.++++.|++++++.++...+. ..++..+.+. + ...+..+ +.+ .++
T Consensus 205 ~~~~n~~~a~~~~~~~E~~~la~a~G~~~~~~~~l~~~~~~~~t~~s~~~~n~~-~----~~~~~~g-~~~~~~~~~~g~ 278 (335)
T 1z82_A 205 GGWDNAKAALETRGIYEIARFGMFFGADQKTFMGLAGIGDLMVTCNSRYSRNRR-F----GELIARG-FNPLKLLESSNQ 278 (335)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTSTTTHHHHHHHHHCTTCHHHH-H----HHHHHHT-CCHHHHHHTCSS
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHhCCChhhhcccccccceeeeccCccCcHHH-H----HHHHhCC-CCHHHHHHhcCC
Confidence 5667877788899999999999999999988765310000 0011111000 0 0001111 111 122
Q ss_pred hhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhcC
Q 024066 215 SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGG 269 (273)
Q Consensus 215 ~~~~~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~G~g~~d~sai~~~~~~~ 269 (273)
.....||++.+.+++++.|+++|+.+.+.++++ ...+...+++.+..+
T Consensus 279 ~~e~~~~~~~v~~~a~~~gv~~P~~~~v~~~~~-------~~~~~~~~~~~l~~~ 326 (335)
T 1z82_A 279 VVEGAFTVKAVMKIAKENKIDMPISEEVYRVVY-------EGKPPLQSMRDLMRR 326 (335)
T ss_dssp CCTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH-------SCCCHHHHHHHHHC-
T ss_pred eeeHHHHHHHHHHHHHHhCCCCcHHHHHHHHHh-------CCCCHHHHHHHHHcC
Confidence 334679999999999999999999999998883 456777777766543
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.53 E-value=5.8e-15 Score=131.58 Aligned_cols=221 Identities=14% Similarity=0.042 Sum_probs=145.7
Q ss_pred CCC--CHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcC-CC---CHHHHHHHHHHHhhchhhhcc
Q 024066 9 TKE--TPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSS-TI---DPQTSRNISAAVSNCILKEKK 82 (273)
Q Consensus 9 ~~~--s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~S-T~---~P~~~~~l~~~~~~~g~~~~~ 82 (273)
..+ ++.|+++++|+||+|+|++ ++++++.. +.+ + .++++||+++ ++ .|++.+.+.+.+.+. -
T Consensus 59 ~~~~~~~~~~~~~~D~vi~~v~~~-~~~~v~~~---i~~-l--~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~-----~ 126 (335)
T 1txg_A 59 IFWPEQLEKCLENAEVVLLGVSTD-GVLPVMSR---ILP-Y--LKDQYIVLISKGLIDFDNSVLTVPEAVWRLK-----H 126 (335)
T ss_dssp EECGGGHHHHHTTCSEEEECSCGG-GHHHHHHH---HTT-T--CCSCEEEECCCSEEEETTEEEEHHHHHHTTS-----T
T ss_pred EecHHhHHHHHhcCCEEEEcCChH-HHHHHHHH---Hhc-C--CCCCEEEEEcCcCccCCCCcCccHHHHHHHh-----c
Confidence 445 7888899999999999987 67778753 433 3 2457899998 55 666667777777541 0
Q ss_pred CCCCCceEEEecCCCCHHH---HhcCc-eEEEee-cCHHHHHHHHHHHHHhcCCeEEeCCcCh-----------------
Q 024066 83 DSWENPVMLDAPVSGGVLA---AEAGT-LTFMVG-GSEDAYQAAKPLFLSMGKNTIYCGGAGN----------------- 140 (273)
Q Consensus 83 g~~~g~~~ldapv~G~~~~---a~~g~-l~~~vg-G~~~~~~~~~~~l~~~~~~i~~~G~~g~----------------- 140 (273)
+ ..+ +.++..+|.. ...|. ..+++| ++++.+++++++|+..+.++++.+++..
T Consensus 127 g----~~~-~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~~~~di~~~~~~k~~~N~~~~~~~~ 201 (335)
T 1txg_A 127 D----LRE-RTVAITGPAIAREVAKRMPTTVVFSSPSESSANKMKEIFETEYFGVEVTTDIIGTEITSALKNVYSIAIAW 201 (335)
T ss_dssp T----CGG-GEEEEESSCCHHHHHTTCCEEEEEECSCHHHHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHH
T ss_pred C----CCC-cEEEEECCCcHHHHHccCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEecCchHHHHHHHHHHHHHHHHHHH
Confidence 1 111 2232333322 22233 234444 4678899999999998888888877533
Q ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHcCCCHHHHH------HHHhhcCCcccccccCCCCCCcccCCCCCCCC
Q 024066 141 GAAAKIC-----NNLTMAVSMLGVSEALTLGQSLGISASTLT------KILNSSSARCWSSDSYNPVPGVMEGVPASRNY 209 (273)
Q Consensus 141 a~~~Kl~-----~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~------~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 209 (273)
...+|+. +|.+......++.|++.++++.|++++.++ +.+..+.. ++.. . + ...|
T Consensus 202 ~~~~~~~~l~~~~n~~~~~~~~~~~E~~~la~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~-~-------~-----~~~~ 267 (335)
T 1txg_A 202 IRGYESRKNVEMSNAKGVIATRAINEMAELIEILGGDRETAFGLSGFGDLIATFRG-GRNG-M-------L-----GELL 267 (335)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSTTTHHHHHHTTTC-HHHH-H-------H-----HHHH
T ss_pred HHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCcchhhcccchhheeecccc-CccH-H-------H-----HHHH
Confidence 3445777 888888889999999999999999998664 55544322 1100 0 0 0011
Q ss_pred CCCcch--------------hhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHh
Q 024066 210 GGGFAS--------------KLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYY 267 (273)
Q Consensus 210 ~~~f~~--------------~~~~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~G~g~~d~sai~~~~~ 267 (273)
.++|++ ....||++.+++++++.|+++|+.+.+.++++. ..+...+++.+.
T Consensus 268 ~~~~s~~~d~~~~~~~~~~~~E~~~~~~~~~~~a~~~gv~~P~~~~~~~~~~~-------~~~~~~~~~~l~ 332 (335)
T 1txg_A 268 GKGLSIDEAMEELERRGVGVVEGYKTAEKAYRLSSKINADTKLLDSIYRVLYE-------GLKVEEVLFELA 332 (335)
T ss_dssp HTTCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHS-------CCCHHHHHHHHH
T ss_pred hCCCCHHHHHHHhccCCceecchHHHHHHHHHHHHHcCCCCcHHHHHHHHHhC-------CCCHHHHHHHHH
Confidence 122322 223599999999999999999999999988853 235555555443
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.1e-14 Score=126.56 Aligned_cols=236 Identities=14% Similarity=0.047 Sum_probs=162.5
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCC-CCHHHHHHHHHHHhhchhhhccCCC
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST-IDPQTSRNISAAVSNCILKEKKDSW 85 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST-~~P~~~~~l~~~~~~~g~~~~~g~~ 85 (273)
.+..+++.|+++++|+||+|||.. ++++++.. +.+.+ .++++||++++ +.|++ +.+.+.+.+.- ++
T Consensus 87 i~~t~d~~ea~~~aDvVilaVp~~-~~~~vl~~---i~~~l--~~~~ivvs~~kGi~~~t-~~~se~i~~~l----~~-- 153 (356)
T 3k96_A 87 LKAYCDLKASLEGVTDILIVVPSF-AFHEVITR---MKPLI--DAKTRIAWGTKGLAKGS-RLLHEVVATEL----GQ-- 153 (356)
T ss_dssp EEEESCHHHHHTTCCEEEECCCHH-HHHHHHHH---HGGGC--CTTCEEEECCCSCBTTT-BCHHHHHHHHH----CS--
T ss_pred eEEECCHHHHHhcCCEEEECCCHH-HHHHHHHH---HHHhc--CCCCEEEEEeCCCCcCc-cCHHHHHHHHc----CC--
Confidence 345678999999999999999975 78888864 44442 34678888877 67766 55666655420 11
Q ss_pred CCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCc-----------------ChHHHHHHHH
Q 024066 86 ENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGA-----------------GNGAAAKICN 148 (273)
Q Consensus 86 ~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~-----------------g~a~~~Kl~~ 148 (273)
..+.++.+|.+.........+..++.+.+++..++++++|+..+-++++..++ |.+..+|+.+
T Consensus 154 ~~~~vlsgP~~a~ev~~g~pt~~via~~~~~~~~~v~~lf~~~~~rv~~~~Di~g~e~~galkNviaia~G~~~gl~~g~ 233 (356)
T 3k96_A 154 VPMAVISGPSLATEVAANLPTAVSLASNNSQFSKDLIERLHGQRFRVYKNDDMIGVELCGSVKNILAIATGISDGLKLGS 233 (356)
T ss_dssp CCEEEEESSCCHHHHHTTCCEEEEEEESCHHHHHHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred CCEEEEECccHHHHHHcCCCeEEEEecCCHHHHHHHHHHhCCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 13678899988776655555666677778899999999999877777666552 4455578888
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHH------HHhhcCCcccccccCCCCCCcccCCCCCCCCCCC------cchh
Q 024066 149 NLTMAVSMLGVSEALTLGQSLGISASTLTK------ILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG------FASK 216 (273)
Q Consensus 149 n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~------~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~------f~~~ 216 (273)
|........+++|+..++++.|++++++++ ++.+.. |..++++. +... +..| ++.. ..+-
T Consensus 234 N~~aal~~~~l~E~~~l~~a~G~~~~t~~gl~g~gDl~~tc~--s~~sRN~~-~G~~----l~~g-~~~~~~~~~~~~~~ 305 (356)
T 3k96_A 234 NARAALITRGLTEMGRLVSVFGGKQETLTGLAGLGDLVLTCT--DNQSRNRR-FGLA----LGEG-VDKKEAQQAIGQAI 305 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHTSTTTHHHHHHHHH--CTTCHHHH-HHHH----HHHT-CCHHHHHHHHCSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCChHhhcccchhhHHHHhcc--CCCCccHH-HHHH----HHCC-CCHHHHHHHcCCcc
Confidence 999999999999999999999999998874 333221 11111110 0000 1111 1100 1233
Q ss_pred hHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhcCC
Q 024066 217 LMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGK 270 (273)
Q Consensus 217 ~~~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~G~g~~d~sai~~~~~~~~ 270 (273)
...++.+.+.+++++.|+++|+++++.+++ |++.+....++.+..++
T Consensus 306 eG~~t~~~~~~la~~~~v~~Pi~~~v~~il-------~~~~~~~~~~~~l~~r~ 352 (356)
T 3k96_A 306 EGLYNTDQVHALAQKHAIEMPLTFQVHRIL-------HEDLDPQQAVQELLERS 352 (356)
T ss_dssp SHHHHHHHHHHHHHHTTCCCHHHHHHHHHH-------HSCCCHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHHHcCCCCcHHHHHHHHH-------hCCCCHHHHHHHHHcCC
Confidence 457889999999999999999999999887 35667777776664443
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-15 Score=137.19 Aligned_cols=241 Identities=12% Similarity=0.071 Sum_probs=150.4
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcC-CCCcccCCCCCC-CeEEEEcC-CCCHHHHHHHHHHHhhchhhhcc
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG-PNGLLQGGNSVR-PQLLIDSS-TIDPQTSRNISAAVSNCILKEKK 82 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~-~~g~l~~~~~~~-g~iiid~S-T~~P~~~~~l~~~~~~~g~~~~~ 82 (273)
+++.++++.|+++++|+||+|||+ .++++++.. ++|+.+.+ .+ +++||+++ ++.|++.+.+.+.+.++ -+
T Consensus 72 ~~~~~~~~~~~~~~aDvVilav~~-~~~~~v~~~~~~gl~~~l--~~~~~ivv~~~~gi~~~~~~~~~~~l~~~----~~ 144 (366)
T 1evy_A 72 NITFTSDVEKAYNGAEIILFVIPT-QFLRGFFEKSGGNLIAYA--KEKQVPVLVCTKGIERSTLKFPAEIIGEF----LP 144 (366)
T ss_dssp TEEEESCHHHHHTTCSSEEECCCH-HHHHHHHHHHCHHHHHHH--HHHTCCEEECCCSCCTTTCCCHHHHHTTT----SC
T ss_pred ceeeeCCHHHHHcCCCEEEECCCh-HHHHHHHHHhHHHHHHhc--CccCCEEEEECCcCCCccccCHHHHHHHH----CC
Confidence 345667899999999999999996 688888864 23354432 23 57899998 77887766677776542 01
Q ss_pred CCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHh--cCCeEEeCCcC---hHHH--------------
Q 024066 83 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSM--GKNTIYCGGAG---NGAA-------------- 143 (273)
Q Consensus 83 g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~--~~~i~~~G~~g---~a~~-------------- 143 (273)
+ +...++..|............+.++.+++++.+++++++|+.+ +.++++.++.- -+..
T Consensus 145 ~--~~~~v~~gp~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~g~~~~~~~di~~~~~~k~~~n~~~~~~~~~~~ 222 (366)
T 1evy_A 145 S--PLLSVLAGPSFAIEVATGVFTCVSIASADINVARRLQRIMSTGDRSFVCWATTDTVGCEVASAVKNVLAIGSGVANG 222 (366)
T ss_dssp G--GGEEEEESSCCHHHHHTTCCEEEEEECSSHHHHHHHHHHHSCTTSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C--CcEEEEeCCChHHHHHhCCceEEEEecCCHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHHhHHHHHHHHHhh
Confidence 1 0123444444332222222234455666888999999999999 77777777632 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC----CcccccccCCCCCCcccCCCCCC-CCC----CCcc
Q 024066 144 AKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS----ARCWSSDSYNPVPGVMEGVPASR-NYG----GGFA 214 (273)
Q Consensus 144 ~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~----~~s~~~~~~~~~~~~~~~~~~~~-~~~----~~f~ 214 (273)
+|+.+|.+......++.|++.++++.|++++.+.++...+. ..++....+. + ...+..+ .+. ..++
T Consensus 223 ~~~~~n~~~~~~~~~~~E~~~la~a~Gi~~~~~~~~~~~~~~~~~~~s~~~~~~~----~-~~~~~~g~~~~~~~~~~~~ 297 (366)
T 1evy_A 223 LGMGLNARAALIMRGLLEIRDLTAALGGDGSAVFGLAGLGDLQLTCSSELSRNFT----V-GKKLGKGLPIEEIQRTSKA 297 (366)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHTTCCCTTTTSTTTHHHHHHHHTCTTSHHHH----H-HHHHHTTCCHHHHHC---C
T ss_pred ccCCccHHHHHHHHHHHHHHHHHHHhCCCCccccccccchhheeeecCCCCchHH----H-HHHHhCCCCHHHHHHHcCC
Confidence 34457888888899999999999999999876654210000 0011111000 0 0001111 010 0122
Q ss_pred hhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHh
Q 024066 215 SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYY 267 (273)
Q Consensus 215 ~~~~~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~G~g~~d~sai~~~~~ 267 (273)
.....||++.+.+++++.|+++|+.+.+.++|+. ..+...+++.+.
T Consensus 298 ~~e~~~~~~~v~~~a~~~gv~~P~~~~v~~~~~~-------~~~~~~~~~~l~ 343 (366)
T 1evy_A 298 VAEGVATADPLMRLAKQLKVKMPLCHQIYEIVYK-------KKNPRDALADLL 343 (366)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHS-------CCCHHHHHHHHG
T ss_pred eeehHHHHHHHHHHHHHhCCCCcHHHHHHHHHHC-------CCCHHHHHHHHH
Confidence 3356799999999999999999999999988853 345555555553
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=8.2e-14 Score=124.09 Aligned_cols=225 Identities=13% Similarity=0.103 Sum_probs=141.9
Q ss_pred cCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccC
Q 024066 4 DMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKD 83 (273)
Q Consensus 4 ~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g 83 (273)
+.|++.++++.+++++||+||+||| +.++++++.+ +.+.+ .++++||++++..+. .++.+++.++ -+
T Consensus 69 ~~G~~~~~~~~e~~~~aDvVilav~-~~~~~~vl~~---l~~~l--~~~~ivvs~s~gi~~--~~l~~~l~~~-----~~ 135 (322)
T 2izz_A 69 KMGVKLTPHNKETVQHSDVLFLAVK-PHIIPFILDE---IGADI--EDRHIVVSCAAGVTI--SSIEKKLSAF-----RP 135 (322)
T ss_dssp HHTCEEESCHHHHHHHCSEEEECSC-GGGHHHHHHH---HGGGC--CTTCEEEECCTTCCH--HHHHHHHHTT-----SS
T ss_pred HcCCEEeCChHHHhccCCEEEEEeC-HHHHHHHHHH---HHhhc--CCCCEEEEeCCCCCH--HHHHHHHhhc-----CC
Confidence 3488888899999999999999999 6788888863 44432 346799999765542 2455555431 00
Q ss_pred CCCCceEEEecCCCCHHHHhcCceEEEeecC---HHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHH--HHHHHHHHHHH
Q 024066 84 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGS---EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKIC--NNLTMAVSMLG 158 (273)
Q Consensus 84 ~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~---~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~--~n~~~~~~~~~ 158 (273)
+..++- .+...|.....|. .++++|+ ++.+++++++|+.+|..+ ++.+........+. .|.+++..+.+
T Consensus 136 ---~~~vv~-~~p~~p~~~~~g~-~v~~~g~~~~~~~~~~v~~ll~~~G~~~-~~~e~~~~~~~a~~g~gpa~~~~~~ea 209 (322)
T 2izz_A 136 ---APRVIR-CMTNTPVVVREGA-TVYATGTHAQVEDGRLMEQLLSSVGFCT-EVEEDLIDAVTGLSGSGPAYAFTALDA 209 (322)
T ss_dssp ---CCEEEE-EECCGGGGGTCEE-EEEEECTTCCHHHHHHHHHHHHTTEEEE-ECCGGGHHHHHHHTTTHHHHHHHHHHH
T ss_pred ---CCeEEE-EeCCcHHHHcCCe-EEEEeCCCCCHHHHHHHHHHHHhCCCEE-EeCHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 133443 3444555555554 7888887 788999999999999864 45553333444443 34444444444
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhhcCCcccccc-cCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCCh
Q 024066 159 VSEALTLGQSLGISASTLTKILNSSSARCWSSD-SYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCP 237 (273)
Q Consensus 159 ~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~~ 237 (273)
++|+ +.+.|++++.+++++..+..+++..- .....|..+ ....++|+++.. ..++.+++.|++.+
T Consensus 210 la~a---~~~~Gl~~~~a~~l~~~~~~g~~~~~~~~~~~p~~l----~~~v~sp~g~t~-------~~l~~l~~~g~~~~ 275 (322)
T 2izz_A 210 LADG---GVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQL----KDNVSSPGGATI-------HALHVLESGGFRSL 275 (322)
T ss_dssp HHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHCSSCHHHH----HHHHCCTTSHHH-------HHHHHHHHTTHHHH
T ss_pred HHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHH----HHhCCCCCcHHH-------HHHHHHHHCCHHHH
Confidence 4444 58899999999999988665443211 001111111 111234554433 34456788999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCcHHH
Q 024066 238 LTSQAQDIYAKLCENGHDSKDFSC 261 (273)
Q Consensus 238 ~~~~~~~~~~~a~~~G~g~~d~sa 261 (273)
+.+++.+.|+++.+.|.++.....
T Consensus 276 ~~~av~~~~~ra~e~~~~~~~~~~ 299 (322)
T 2izz_A 276 LINAVEASCIRTRELQSMADQEQV 299 (322)
T ss_dssp HHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHhhccccccc
Confidence 999999999999988776544433
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.3e-14 Score=122.19 Aligned_cols=159 Identities=13% Similarity=0.151 Sum_probs=117.3
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCC
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 85 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~ 85 (273)
|++..+++.++++++|+||+|+|++ .+++++.. +.+.+ +++++||++||..|.+. +.+.+...
T Consensus 55 g~~~~~~~~~~~~~~Dvvi~av~~~-~~~~v~~~---l~~~~--~~~~ivv~~s~~~~~~~--l~~~~~~~--------- 117 (266)
T 3d1l_A 55 EAEYTTDLAEVNPYAKLYIVSLKDS-AFAELLQG---IVEGK--REEALMVHTAGSIPMNV--WEGHVPHY--------- 117 (266)
T ss_dssp TCEEESCGGGSCSCCSEEEECCCHH-HHHHHHHH---HHTTC--CTTCEEEECCTTSCGGG--STTTCSSE---------
T ss_pred CCceeCCHHHHhcCCCEEEEecCHH-HHHHHHHH---HHhhc--CCCcEEEECCCCCchHH--HHHHHHhc---------
Confidence 6777788999999999999999988 55777753 44432 35689999999988543 33333211
Q ss_pred CCceEEEecCCCCHHHHhcCceEEEe-ecCHHHHHHHHHHHHHhcCCeEEeCCcC---hHHHHHHHHHHHHHHHHHHHHH
Q 024066 86 ENPVMLDAPVSGGVLAAEAGTLTFMV-GGSEDAYQAAKPLFLSMGKNTIYCGGAG---NGAAAKICNNLTMAVSMLGVSE 161 (273)
Q Consensus 86 ~g~~~ldapv~G~~~~a~~g~l~~~v-gG~~~~~~~~~~~l~~~~~~i~~~G~~g---~a~~~Kl~~n~~~~~~~~~~~E 161 (273)
+..+.++|++|++... .+...+++ |++++.+++++++|+.+|.+++++++.+ .....|+++|.. .++..++|
T Consensus 118 -~~~~~~~~~~g~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~e 193 (266)
T 3d1l_A 118 -GVFYPMQTFSKQREVD-FKEIPFFIEASSTEDAAFLKAIASTLSNRVYDADSEQRKSLHLAAVFTCNFT--NHMYALAA 193 (266)
T ss_dssp -EEEEECCCC---CCCC-CTTCCEEEEESSHHHHHHHHHHHHTTCSCEEECCHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred -cCcCCceecCCCchhh-cCCCeEEEecCCHHHHHHHHHHHHhcCCcEEEeCHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 2567889998865433 34455666 8899999999999999998899998754 568899999983 44677778
Q ss_pred HHHHHHHcCCCHHHHHHHHhhcCCcc
Q 024066 162 ALTLGQSLGISASTLTKILNSSSARC 187 (273)
Q Consensus 162 a~~la~~~Gl~~~~~~~~l~~~~~~s 187 (273)
+ ++++.|++++.+.+++..+..++
T Consensus 194 a--l~~~~Gl~~~~~~~l~~~~~~~~ 217 (266)
T 3d1l_A 194 E--LLKKYNLPFDVMLPLIDETARKV 217 (266)
T ss_dssp H--HHHHTTCCGGGGHHHHHHHHHHH
T ss_pred H--HHHHcCCCHHHHHHHHHHHHHHH
Confidence 6 66899999999999988765443
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.5e-14 Score=124.78 Aligned_cols=210 Identities=10% Similarity=0.049 Sum_probs=134.7
Q ss_pred CHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEE
Q 024066 12 TPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML 91 (273)
Q Consensus 12 s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~~l 91 (273)
+..+.+..+|+||+||+++. +++++.. +.+.+ .++++||++++. ++..+.+.+.+.+. ....+..++
T Consensus 76 ~~~~~~~~~D~vil~vk~~~-~~~v~~~---i~~~l--~~~~~iv~~~nG-~~~~~~l~~~l~~~------~v~~g~~~~ 142 (317)
T 2qyt_A 76 DNPAEVGTVDYILFCTKDYD-MERGVAE---IRPMI--GQNTKILPLLNG-ADIAERMRTYLPDT------VVWKGCVYI 142 (317)
T ss_dssp SCHHHHCCEEEEEECCSSSC-HHHHHHH---HGGGE--EEEEEEEECSCS-SSHHHHHTTTSCTT------TBCEEEEEE
T ss_pred cCccccCCCCEEEEecCccc-HHHHHHH---HHhhc--CCCCEEEEccCC-CCcHHHHHHHCCCC------cEEEEEEEE
Confidence 44566789999999999975 5777743 43332 235788888664 44445555554321 011136788
Q ss_pred EecCCC--CHHHHhcCceEEEeec-----CHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHH-----------
Q 024066 92 DAPVSG--GVLAAEAGTLTFMVGG-----SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA----------- 153 (273)
Q Consensus 92 dapv~G--~~~~a~~g~l~~~vgG-----~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~----------- 153 (273)
+++++| .......|.+.+ +|+ +.+.+ +++++|+..+.++++.++++.+...|++.|.++.
T Consensus 143 ~a~~~~pg~~~~~~~g~~~~-ig~~~~~~~~~~~-~~~~ll~~~g~~~~~~~di~~~~~~Kl~~N~~~~~~~al~g~~~g 220 (317)
T 2qyt_A 143 SARKSAPGLITLEADRELFY-FGSGLPEQTDDEV-RLAELLTAAGIRAYNPTDIDWYIMKKFMMISVTATATAYFDKPIG 220 (317)
T ss_dssp EEEEEETTEEEEEEEEEEEE-EECCSSSCCHHHH-HHHHHHHHTTCCEECCSCHHHHHHHHHHHHHHHHHHHHHHTSCHH
T ss_pred EEEEcCCCEEEEcCCCceEE-EcCCCCCCcCHHH-HHHHHHHHCCCCCEEchHHHHHHHHHHHHHHhhHHHHHHHCCCHH
Confidence 999875 223344454332 443 46667 8999999999988888999999999999998764
Q ss_pred --------HHHHHHHHHHHHHHHcCCCHH--HHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHH
Q 024066 154 --------VSMLGVSEALTLGQSLGISAS--TLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLN 223 (273)
Q Consensus 154 --------~~~~~~~Ea~~la~~~Gl~~~--~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~ 223 (273)
....++.|++.++++.|++++ .+.+.+..... ..... .+.++ .|+..++..+.- ..++
T Consensus 221 ~~~~~~~~~~~~~~~E~~~v~~a~G~~~~~~~~~~~~~~~~~--~~~~~---~~sm~------~d~~~g~~~E~~-~~~g 288 (317)
T 2qyt_A 221 SILTEHEPELLSLLEEVAELFRAKYGQVPDDVVQQLLDKQRK--MPPES---TSSMH------SDFLQGGSTEVE-TLTG 288 (317)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHTSCCCSSHHHHHHHHHHH--C-----------------------------C-TTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhc--cCCCC---CChHH------HHHHcCCccCHH-HHhh
Confidence 345899999999999999874 66777655210 00010 11121 244444332211 1278
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHH
Q 024066 224 LALASAKEVGVDCPLTSQAQDIYAK 248 (273)
Q Consensus 224 ~~~~~a~~~g~~~~~~~~~~~~~~~ 248 (273)
.+++++++.|+++|+.+.+.++++.
T Consensus 289 ~~~~~a~~~gv~~P~~~~~~~~~~~ 313 (317)
T 2qyt_A 289 YVVREAEALRVDLPMYKRMYRELVS 313 (317)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 9999999999999999999887754
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.7e-13 Score=113.89 Aligned_cols=210 Identities=10% Similarity=0.030 Sum_probs=136.9
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCC
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 85 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~ 85 (273)
|++.++++.++++++|+||+|+|+ .++++++.. +.+.+ +++.+|.++++++++..+ +.+... .+
T Consensus 45 g~~~~~~~~~~~~~~D~vi~~v~~-~~~~~v~~~---l~~~l--~~~~vv~~~~gi~~~~l~---~~~~~~----~~--- 108 (262)
T 2rcy_A 45 TLNYMSSNEELARHCDIIVCAVKP-DIAGSVLNN---IKPYL--SSKLLISICGGLNIGKLE---EMVGSE----NK--- 108 (262)
T ss_dssp SSEECSCHHHHHHHCSEEEECSCT-TTHHHHHHH---SGGGC--TTCEEEECCSSCCHHHHH---HHHCTT----SE---
T ss_pred ceEEeCCHHHHHhcCCEEEEEeCH-HHHHHHHHH---HHHhc--CCCEEEEECCCCCHHHHH---HHhCCC----Cc---
Confidence 667778999999999999999995 578888864 44432 345688899999997433 334220 00
Q ss_pred CCceEEEecCCCCHHHHhcCceEEEeec---CHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHH--HHHHHHHHHHHHH
Q 024066 86 ENPVMLDAPVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKIC--NNLTMAVSMLGVS 160 (273)
Q Consensus 86 ~g~~~ldapv~G~~~~a~~g~l~~~vgG---~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~--~n~~~~~~~~~~~ 160 (273)
.++++ .+.|.....| +.++++| +++.+++++++|+.+|. ++++++......+++. .|.++...+..+.
T Consensus 109 -~v~~~----p~~p~~~~~g-~~~~~~~~~~~~~~~~~~~~ll~~~G~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~al~ 181 (262)
T 2rcy_A 109 -IVWVM----PNTPCLVGEG-SFIYCSNKNVNSTDKKYVNDIFNSCGI-IHEIKEKDMDIATAISGCGPAYVYLFIESLI 181 (262)
T ss_dssp -EEEEE----CCGGGGGTCE-EEEEEECTTCCHHHHHHHHHHHHTSEE-EEECCGGGHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred -EEEEC----CChHHHHcCC-eEEEEeCCCCCHHHHHHHHHHHHhCCC-EEEeCHHHccHHHHHHccHHHHHHHHHHHHH
Confidence 02232 2333334456 6777777 57889999999999998 8999875555555554 4666655555555
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhcCCcccccc-cCCCCCCcccCCCCCCCC-CCCcchhhHHHHHHHHHHHHHHhCCCChH
Q 024066 161 EALTLGQSLGISASTLTKILNSSSARCWSSD-SYNPVPGVMEGVPASRNY-GGGFASKLMAKDLNLALASAKEVGVDCPL 238 (273)
Q Consensus 161 Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~-~~~~~~~~~~~~~~~~~~-~~~f~~~~~~KD~~~~~~~a~~~g~~~~~ 238 (273)
|+ +.+.|++++.+++++..+...++... .....|.++ .+.+ .++++.....++ .++.|++..+
T Consensus 182 ~~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~d~~~~~~~t~~~~l~~-------l~~~~~~~~~ 246 (262)
T 2rcy_A 182 DA---GVKNGLSRELSKNLVLQTIKGSVEMVKKSDQPVQQL-----KDNIVSPGGITAVGLYS-------LEKNSFKYTV 246 (262)
T ss_dssp HH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHCSSCHHHH-----HHHHCCTTSHHHHHHHH-------HHHTTHHHHH
T ss_pred HH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHH-----HHhcCCCChHHHHHHHH-------HHHCChHHHH
Confidence 54 68999999999998876543332111 001112222 2233 345654444444 4566889999
Q ss_pred HHHHHHHHHHHHHCC
Q 024066 239 TSQAQDIYAKLCENG 253 (273)
Q Consensus 239 ~~~~~~~~~~a~~~G 253 (273)
.+++.+.|+++.+.+
T Consensus 247 ~~a~~~~~~r~~~~~ 261 (262)
T 2rcy_A 247 MNAVEAACEKSKAMG 261 (262)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999987754
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=99.43 E-value=2e-13 Score=119.34 Aligned_cols=159 Identities=13% Similarity=0.115 Sum_probs=122.8
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCC
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 84 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~ 84 (273)
.|++.. ++.+++++||+||+|+|++. +++++.. +.+.+ .++++|||+||..|.... .+ +. +
T Consensus 54 ~g~~~~-~~~~~~~~aDvVi~av~~~~-~~~v~~~---l~~~l--~~~~ivv~~s~~~~~~~l--~~-~~-------~-- 114 (286)
T 3c24_A 54 MGIPLT-DGDGWIDEADVVVLALPDNI-IEKVAED---IVPRV--RPGTIVLILDAAAPYAGV--MP-ER-------A-- 114 (286)
T ss_dssp TTCCCC-CSSGGGGTCSEEEECSCHHH-HHHHHHH---HGGGS--CTTCEEEESCSHHHHHTC--SC-CC-------T--
T ss_pred cCCCcC-CHHHHhcCCCEEEEcCCchH-HHHHHHH---HHHhC--CCCCEEEECCCCchhHHH--Hh-hh-------C--
Confidence 455443 67788999999999999865 7888753 54442 356899999888764322 22 11 1
Q ss_pred CCCceEE-EecCCCCH------HHHhcCce-------E--EEeecCHHHHHHHHHHHHHhcC---CeEEeCCcChHHHHH
Q 024066 85 WENPVML-DAPVSGGV------LAAEAGTL-------T--FMVGGSEDAYQAAKPLFLSMGK---NTIYCGGAGNGAAAK 145 (273)
Q Consensus 85 ~~g~~~l-dapv~G~~------~~a~~g~l-------~--~~vgG~~~~~~~~~~~l~~~~~---~i~~~G~~g~a~~~K 145 (273)
+..|+ +.|++|++ .....|.+ . +..+++++.+++++++|+.+|. +++++++.+.+...|
T Consensus 115 --~~~~v~~~P~~~~~~~~~~~~~~~~g~l~~~~~~~~i~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~v~~~~~~~~~~ 192 (286)
T 3c24_A 115 --DITYFIGHPCHPPLFNDETDPAARTDYHGGIAKQAIVCALMQGPEEHYAIGADICETMWSPVTRTHRVTTEQLAILEP 192 (286)
T ss_dssp --TSEEEEEEECCSCSSCCCCSHHHHTCSSSSSSCEEEEEEEEESCTHHHHHHHHHHHHHTCSEEEEEECCHHHHHHHTT
T ss_pred --CCeEEecCCCCccccccccchhhccCcccccccceeeeeccCCCHHHHHHHHHHHHHhcCCcceEEEeChhHhHHHHH
Confidence 36788 99999988 66777742 2 3457889999999999999998 799998887787779
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHhhcC
Q 024066 146 ICNNLTMAVSMLGVSEALTLGQSL-GISASTLTKILNSSS 184 (273)
Q Consensus 146 l~~n~~~~~~~~~~~Ea~~la~~~-Gl~~~~~~~~l~~~~ 184 (273)
.++|.....++..++|++..+.+. |++.+.+.+++..+.
T Consensus 193 a~~n~~~~~~~~~~~eal~~~~~~~Gl~~~~~~~~~~~~~ 232 (286)
T 3c24_A 193 GLSEMVAMPFVETMVHAVDECADRYGIDRQAALDFMIGHL 232 (286)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999998889999999988776665 999999999887654
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.9e-13 Score=124.11 Aligned_cols=235 Identities=14% Similarity=0.078 Sum_probs=148.6
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCccc----CCCCCCCeEEEEcCC-CCH--HHHHHHHHHHhhchh
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQ----GGNSVRPQLLIDSST-IDP--QTSRNISAAVSNCIL 78 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~----~~~~~~g~iiid~ST-~~P--~~~~~l~~~~~~~g~ 78 (273)
+++.++++.|+++++|+||+|||+ .++++++.. +.+ .+ .++++||++++ ++| ++.+.+.+.+.+.
T Consensus 90 ~i~~~~~~~ea~~~aDvVilav~~-~~~~~vl~~---i~~~~~~~l--~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~-- 161 (375)
T 1yj8_A 90 NIVAHSDLASVINDADLLIFIVPC-QYLESVLAS---IKESESIKI--ASHAKAISLTKGFIVKKNQMKLCSNYISDF-- 161 (375)
T ss_dssp TEEEESSTHHHHTTCSEEEECCCH-HHHHHHHHH---HTC---CCC--CTTCEEEECCCSCEEETTEEECHHHHHHHH--
T ss_pred CeEEECCHHHHHcCCCEEEEcCCH-HHHHHHHHH---HhhhhhccC--CCCCEEEEeCCccccCCccccCHHHHHHHH--
Confidence 456677899999999999999995 688888863 443 32 34678999884 566 2344555555432
Q ss_pred hhccCCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcC---hHHHH-----------
Q 024066 79 KEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAG---NGAAA----------- 144 (273)
Q Consensus 79 ~~~~g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g---~a~~~----------- 144 (273)
.+ ....++..|-...........+.++.+++++.+++++++|+..+.++++.+++- -+..+
T Consensus 162 ---~~--~~~~v~~gp~~a~~v~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~ 236 (375)
T 1yj8_A 162 ---LN--IPCSALSGANIAMDVAMENFSEATIGGNDKDSLVIWQRVFDLPYFKINCVNETIEVEICGALKNIITLACGFC 236 (375)
T ss_dssp ---SS--SCEEEEECSCCHHHHHTTCCEEEEEECSCHHHHHHHHHHHCBTTEEEEEESCSHHHHHHHHHHHHHHHHHHHH
T ss_pred ---cC--CCEEEEeCCchHHHHHhCCCeEEEEecCCHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHHHHHHHHHHHHHH
Confidence 01 012334444332211222233455666788899999999999888888877753 23332
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHH------HHhhcCC-cccccccCCCCCCcccCCCCC-CC-CC
Q 024066 145 ---KICNNLTMAVSMLGVSEALTLGQSL--GISASTLTK------ILNSSSA-RCWSSDSYNPVPGVMEGVPAS-RN-YG 210 (273)
Q Consensus 145 ---Kl~~n~~~~~~~~~~~Ea~~la~~~--Gl~~~~~~~------~l~~~~~-~s~~~~~~~~~~~~~~~~~~~-~~-~~ 210 (273)
|+.+|.+......++.|++.++++. |++++++.+ .+.+... .++.. ...+.. ++ ++
T Consensus 237 ~~~~~~~n~~~a~~~~~~~E~~~la~a~G~G~~~~~~~~~~g~~dl~~t~~~~~~~~~----------~~~~~~~g~~~~ 306 (375)
T 1yj8_A 237 DGLNLPTNSKSAIIRNGINEMILFGKVFFQKFNENILLESCGFADIITSFLAGRNAKC----------SAEFIKSTPKKT 306 (375)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHSSCCCGGGGGSTTTHHHHHHHHSSSSHHHH----------HHHHHHHTTSSC
T ss_pred hhccCChhHHHHHHHHHHHHHHHHHHHhccCCCcchhhccccccceeEeeeCCccHHH----------HHHHHhcCCCCC
Confidence 3447878888899999999999999 699877643 3333221 11100 000101 10 11
Q ss_pred --C------CcchhhHHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhcCC
Q 024066 211 --G------GFASKLMAKDLNLALASAKEVGV--DCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGK 270 (273)
Q Consensus 211 --~------~f~~~~~~KD~~~~~~~a~~~g~--~~~~~~~~~~~~~~a~~~G~g~~d~sai~~~~~~~~ 270 (273)
. .+......||++.+.+++++.|+ ++|+.+.+.+++. ++.+...+++.+..++
T Consensus 307 ~~d~~~~~~~g~~~E~~~~~~~v~~~a~~~gv~~~~P~~~~v~~~~~-------~~~~~~~~~~~l~~~~ 369 (375)
T 1yj8_A 307 WEELENEILKGQKLQGTVTLKYVYHMIKEKNMTNEFPLFTVLHKISF-------ENEDPSSLLKTFMNNK 369 (375)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCGGGCHHHHHHHHHHH-------SCCCTTHHHHHHSSCC
T ss_pred HHHHHHhhcCCcEeeHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHh-------CCCCHHHHHHHHHcCc
Confidence 0 03445678999999999999999 9999999988874 2344445555554443
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.4e-13 Score=123.82 Aligned_cols=213 Identities=15% Similarity=0.093 Sum_probs=137.9
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCC-CC--HHHHHHHHHHHhhchhhhccC
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST-ID--PQTSRNISAAVSNCILKEKKD 83 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST-~~--P~~~~~l~~~~~~~g~~~~~g 83 (273)
++.++++.+++++||+||+|||+ .++++++.. +.+.+ .++++||++++ +. |++.+.+.+.+.++. +
T Consensus 78 ~~~~~~~~~~~~~aD~Vilav~~-~~~~~v~~~---i~~~l--~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~-----~ 146 (354)
T 1x0v_A 78 VVAVPDVVQAAEDADILIFVVPH-QFIGKICDQ---LKGHL--KANATGISLIKGVDEGPNGLKLISEVIGERL-----G 146 (354)
T ss_dssp EEEESSHHHHHTTCSEEEECCCG-GGHHHHHHH---HTTCS--CTTCEEEECCCCBCSSSSSCCBHHHHHHHHH-----T
T ss_pred eEEEcCHHHHHcCCCEEEEeCCH-HHHHHHHHH---HHhhC--CCCCEEEEECCccCCCCCccccHHHHHHHHc-----C
Confidence 45567899999999999999997 577888753 44432 34678999987 44 444455555554320 1
Q ss_pred CCCCceEEEecCCCCHHHH---hcC--ceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHH-----------
Q 024066 84 SWENPVMLDAPVSGGVLAA---EAG--TLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKIC----------- 147 (273)
Q Consensus 84 ~~~g~~~ldapv~G~~~~a---~~g--~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~----------- 147 (273)
.+.++..+|..+ ..| ...++.+++++.+++++++|+..+.++++.++.-.....|++
T Consensus 147 -------~~~~v~~gp~~a~~v~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~~~N~~~~~~g~~ 219 (354)
T 1x0v_A 147 -------IPMSVLMGANIASEVADEKFCETTIGCKDPAQGQLLKELMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFC 219 (354)
T ss_dssp -------CCEEEEECSCCHHHHHTTCCEEEEEECSSHHHHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------CCEEEEECCCcHHHHHhcCCceEEEEECCHHHHHHHHHHhCCCCEEEEEcCCchHhHHHHHHHHHHHHHHHHH
Confidence 123344443322 234 334555667888999999999988888877775333333333
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHcCC---CHHHHHH------HHhhcC-CcccccccCCCCCCcccCCCCCCCCCC
Q 024066 148 ------NNLTMAVSMLGVSEALTLGQSLGI---SASTLTK------ILNSSS-ARCWSSDSYNPVPGVMEGVPASRNYGG 211 (273)
Q Consensus 148 ------~n~~~~~~~~~~~Ea~~la~~~Gl---~~~~~~~------~l~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~ 211 (273)
+|.+......++.|++.++++.|+ +++++.+ .+.+.. ..++. +. +. +..+.++.
T Consensus 220 ~~~~~~~n~~~~~~~~~~~E~~~la~a~G~~~~~~~~~~~~~g~~d~~~~~~~~~~~~---~~--~~-----~~~~~~~~ 289 (354)
T 1x0v_A 220 DGLGFGDNTKAAVIRLGLMEMIAFAKLFCSGPVSSATFLESCGVADLITTCYGGRNRK---VA--EA-----FARTGKSI 289 (354)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHSSSCCCGGGGGSTTTHHHHHHHHHHCHHHH---HH--HH-----HHHHCCCH
T ss_pred HHccCCccHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccchHHHHHHhhcccccHH---HH--HH-----HHhcCCCH
Confidence 787778889999999999999999 8876532 232221 11110 00 00 00001110
Q ss_pred --------CcchhhHHHHHHHHHHHHHHhCC--CChHHHHHHHHHH
Q 024066 212 --------GFASKLMAKDLNLALASAKEVGV--DCPLTSQAQDIYA 247 (273)
Q Consensus 212 --------~f~~~~~~KD~~~~~~~a~~~g~--~~~~~~~~~~~~~ 247 (273)
.+......||++.+.+++++.|+ ++|+.+.+.+++.
T Consensus 290 ~~~~~~~~~g~~~E~~~~~g~v~~~a~~~gv~~~~P~~~~v~~~~~ 335 (354)
T 1x0v_A 290 EQLEKELLNGQKLQGPETARELYSILQHKGLVDKFPLFMAVYKVCY 335 (354)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHHHTCGGGSHHHHHHHHHHH
T ss_pred HHHHHhhcCCcEeehHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHh
Confidence 13344568999999999999999 9999999988874
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.8e-11 Score=113.21 Aligned_cols=144 Identities=23% Similarity=0.245 Sum_probs=106.5
Q ss_pred CCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEE-EEcCCCCHHHHHHHHHHHhhchhhhccCCCCC
Q 024066 9 TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSWEN 87 (273)
Q Consensus 9 ~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~ii-id~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g 87 (273)
.++++. ++++||+||.|||.+.+++..++. .+.+.. +++.++ .|+||+++. ++++.+... ++ ..|
T Consensus 75 ~~~~~~-~~~~aDlVIeAVpe~~~vk~~v~~--~l~~~~--~~~~IlasntSti~i~---~ia~~~~~p---~~---~ig 140 (483)
T 3mog_A 75 PVTDIH-ALAAADLVIEAASERLEVKKALFA--QLAEVC--PPQTLLTTNTSSISIT---AIAAEIKNP---ER---VAG 140 (483)
T ss_dssp EECCGG-GGGGCSEEEECCCCCHHHHHHHHH--HHHHHS--CTTCEEEECCSSSCHH---HHTTTSSSG---GG---EEE
T ss_pred EeCCHH-HhcCCCEEEEcCCCcHHHHHHHHH--HHHHhh--ccCcEEEecCCCCCHH---HHHHHccCc---cc---eEE
Confidence 456664 688999999999999877544332 244332 345676 589999996 344333210 00 013
Q ss_pred ceEEE-ecCCCCHHHHhcCceEEEeec---CHHHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHH
Q 024066 88 PVMLD-APVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEA 162 (273)
Q Consensus 88 ~~~ld-apv~G~~~~a~~g~l~~~vgG---~~~~~~~~~~~l~~~~~~i~~~G~-~g~a~~~Kl~~n~~~~~~~~~~~Ea 162 (273)
.+|.+ +|++ +++.+++| +++++++++++++.+|+.++++|+ +| |++||++.. .++|+
T Consensus 141 ~hf~~Pa~v~---------~Lvevv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d~~G-----fi~Nr~l~~----~~~Ea 202 (483)
T 3mog_A 141 LHFFNPAPVM---------KLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCHSTPG-----FIVNRVARP----YYSEA 202 (483)
T ss_dssp EEECSSTTTC---------CEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESCTT-----TTHHHHTHH----HHHHH
T ss_pred eeecChhhhC---------CeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEEeccCc-----chHHHHHHH----HHHHH
Confidence 56666 4444 67889999 789999999999999999999998 55 888887766 68999
Q ss_pred HHHHHHcCCCHHHHHHHHhhcC
Q 024066 163 LTLGQSLGISASTLTKILNSSS 184 (273)
Q Consensus 163 ~~la~~~Gl~~~~~~~~l~~~~ 184 (273)
+.++++.+.+++++-+++..+.
T Consensus 203 ~~l~~~g~~~~~~id~a~~~~~ 224 (483)
T 3mog_A 203 WRALEEQVAAPEVIDAALRDGA 224 (483)
T ss_dssp HHHHHTTCSCHHHHHHHHHHTT
T ss_pred HHHHHhCCCCHHHHHHHHHhcC
Confidence 9999999999999999998654
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.20 E-value=2.9e-11 Score=108.47 Aligned_cols=222 Identities=9% Similarity=0.065 Sum_probs=129.6
Q ss_pred CCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCc
Q 024066 9 TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENP 88 (273)
Q Consensus 9 ~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~ 88 (273)
..+++.++++++|+||+|+|++.. ++++. .+.+.+ .++++||++.++.+.. .++.+.+.+.+ ...+
T Consensus 65 ~~~~~~~~~~~~D~vi~~v~~~~~-~~~~~---~l~~~l--~~~~~vv~~~~~~~~~-~~~~~~l~~~~-------~~~v 130 (359)
T 1bg6_A 65 LTSDIGLAVKDADVILIVVPAIHH-ASIAA---NIASYI--SEGQLIILNPGATGGA-LEFRKILRENG-------APEV 130 (359)
T ss_dssp EESCHHHHHTTCSEEEECSCGGGH-HHHHH---HHGGGC--CTTCEEEESSCCSSHH-HHHHHHHHHTT-------CCCC
T ss_pred ecCCHHHHHhcCCEEEEeCCchHH-HHHHH---HHHHhC--CCCCEEEEcCCCchHH-HHHHHHHHhcC-------CCCe
Confidence 457889989999999999998865 66664 244432 3467888886655544 34555555421 0124
Q ss_pred eEEE---ecCCCCHHHHhcCceEEE-------e-----ecCHHHHHHHHHHHHHhc--CC-----------eEEeCC--c
Q 024066 89 VMLD---APVSGGVLAAEAGTLTFM-------V-----GGSEDAYQAAKPLFLSMG--KN-----------TIYCGG--A 138 (273)
Q Consensus 89 ~~ld---apv~G~~~~a~~g~l~~~-------v-----gG~~~~~~~~~~~l~~~~--~~-----------i~~~G~--~ 138 (273)
.|++ +|+.+...+ .|.+.++ + +++++.+++++++|..+. .+ ++|.+. .
T Consensus 131 ~~~~~~~~~~~~~~~g--pg~v~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~di~~k~~~nvn~~~n~~~al~ 208 (359)
T 1bg6_A 131 TIGETSSMLFTCRSER--PGQVTVNAIKGAMDFACLPAAKAGWALEQIGSVLPQYVAVENVLHTSLTNVNAVMHPLPTLL 208 (359)
T ss_dssp EEEEESSCSEEEECSS--TTEEEEEEECSCEEEEEESGGGHHHHHHHHTTTCTTEEECSCHHHHHHCCHHHHHTHHHHHT
T ss_pred EEEEecCCcEEEEeCC--CCEEEEEEeecceEEEeccccccHHHHHHHHHHhhhcEEcCChHhhhccCCCccccHHHHHh
Confidence 5777 676654221 1232222 2 344556777777776542 11 111111 0
Q ss_pred ChHHHHH---HH------HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCccccc--ccCCCCCCcccCCCCCC
Q 024066 139 GNGAAAK---IC------NNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSS--DSYNPVPGVMEGVPASR 207 (273)
Q Consensus 139 g~a~~~K---l~------~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~--~~~~~~~~~~~~~~~~~ 207 (273)
+.+...| +. .+........++.|++.++++.|++++.+.+.+......++.. ... ..+.++. +
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~va~a~G~~~~~~~~~~~~~~~~~~~~l~~~~-~~~sm~~-----d 282 (359)
T 1bg6_A 209 NAARCESGTPFQYYLEGITPSVGSLAEKVDAERIAIAKAFDLNVPSVCEWYKESYGQSPATIYEAV-QGNPAYR-----G 282 (359)
T ss_dssp THHHHHTTCCCBHHHHHCCHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHC-------CCSHHHHH-HTCGGGT-----T
T ss_pred hhchhhcCCccchhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhCCCcccHHHHH-hcchhhc-----C
Confidence 3333322 10 1223466688899999999999999888888876644332210 000 0111221 1
Q ss_pred CCCC-CcchhhHHHHH----HHHHHHHHHhCCCChHHHHHHHHHHHHHHC
Q 024066 208 NYGG-GFASKLMAKDL----NLALASAKEVGVDCPLTSQAQDIYAKLCEN 252 (273)
Q Consensus 208 ~~~~-~f~~~~~~KD~----~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~ 252 (273)
...| .+....+.||+ ..+++++++.|+++|+.+.+.++++.....
T Consensus 283 ~~~~~e~~~~~~~~D~~~~~g~~~~~a~~~gv~~P~~~~l~~~~~~~~~~ 332 (359)
T 1bg6_A 283 IAGPINLNTRYFFEDVSTGLVPLSELGRAVNVPTPLIDAVLDLISSLIDT 332 (359)
T ss_dssp CBCCSSSCCHHHHHHHHTTHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCccceecCcCccHHHHHHHHHHcCCCchHHHHHHHHHHHHHCC
Confidence 1112 23333789998 789999999999999999999999887655
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=4.1e-11 Score=99.78 Aligned_cols=128 Identities=15% Similarity=0.230 Sum_probs=100.4
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCC-CC-----------HHHHHHHHHHHhhch
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST-ID-----------PQTSRNISAAVSNCI 77 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST-~~-----------P~~~~~l~~~~~~~g 77 (273)
.+++.++++++|+||+|+|. ..+++++.. +.+.+ +++++|++++ ++ |...+++++.+.
T Consensus 55 ~~~~~~~~~~~D~Vi~~~~~-~~~~~~~~~---l~~~~---~~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~--- 124 (212)
T 1jay_A 55 GMKNEDAAEACDIAVLTIPW-EHAIDTARD---LKNIL---REKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLE--- 124 (212)
T ss_dssp EEEHHHHHHHCSEEEECSCH-HHHHHHHHH---THHHH---TTSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHT---
T ss_pred hhhHHHHHhcCCEEEEeCCh-hhHHHHHHH---HHHHc---CCCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCC---
Confidence 35778889999999999995 456777753 33322 3579999998 33 344677777663
Q ss_pred hhhccCCCCCceEEEe--cCCCCHHHH--hcCceEEEeecC-HHHHHHHHHHHHHh-cCCeEEeCCcChHHHHHHHHHHH
Q 024066 78 LKEKKDSWENPVMLDA--PVSGGVLAA--EAGTLTFMVGGS-EDAYQAAKPLFLSM-GKNTIYCGGAGNGAAAKICNNLT 151 (273)
Q Consensus 78 ~~~~~g~~~g~~~lda--pv~G~~~~a--~~g~l~~~vgG~-~~~~~~~~~~l~~~-~~~i~~~G~~g~a~~~Kl~~n~~ 151 (273)
+..++++ |+.+..... ..+.++++++|+ ++.+++++++|+.+ |.+++++|+.++|+.+|+++|++
T Consensus 125 ---------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~l~~~~~G~~~~~~~~~~~a~~~k~~~~~~ 195 (212)
T 1jay_A 125 ---------SEKVVSALHTIPAARFANLDEKFDWDVPVCGDDDESKKVVMSLISEIDGLRPLDAGPLSNSRLVESLTPLI 195 (212)
T ss_dssp ---------CSCEEECCTTCCHHHHHCTTCCCCEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEESGGGHHHHHTHHHHH
T ss_pred ---------CCeEEEEccchHHHHhhCcCCCCCccEEEECCcHHHHHHHHHHHHHcCCCCceeccchhHHHHhcchHHHH
Confidence 1578998 887776655 667789999997 88999999999999 99899999999999999999988
Q ss_pred HHHHH
Q 024066 152 MAVSM 156 (273)
Q Consensus 152 ~~~~~ 156 (273)
.....
T Consensus 196 ~~~~~ 200 (212)
T 1jay_A 196 LNIMR 200 (212)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77543
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.14 E-value=9.5e-10 Score=93.91 Aligned_cols=157 Identities=13% Similarity=0.133 Sum_probs=104.2
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccC
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKD 83 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iii-d~ST~~P~~~~~l~~~~~~~g~~~~~g 83 (273)
.|++.++++.|++++||+||+|++ +.++++++.+ +.+.+ .++++|| ++++++++. +.+.+..
T Consensus 49 ~g~~~~~~~~e~~~~aDvVilav~-~~~~~~v~~~---l~~~l--~~~~~vvs~~~gi~~~~---l~~~~~~-------- 111 (247)
T 3gt0_A 49 YGLTTTTDNNEVAKNADILILSIK-PDLYASIINE---IKEII--KNDAIIVTIAAGKSIES---TENAFNK-------- 111 (247)
T ss_dssp HCCEECSCHHHHHHHCSEEEECSC-TTTHHHHC------CCSS--CTTCEEEECSCCSCHHH---HHHHHCS--------
T ss_pred hCCEEeCChHHHHHhCCEEEEEeC-HHHHHHHHHH---HHhhc--CCCCEEEEecCCCCHHH---HHHHhCC--------
Confidence 378888999999999999999996 5678888853 54442 3456777 677777654 3444421
Q ss_pred CCCCceEE----EecCCCCHHHHhcCceEEEe--ecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHH
Q 024066 84 SWENPVML----DAPVSGGVLAAEAGTLTFMV--GGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSML 157 (273)
Q Consensus 84 ~~~g~~~l----dapv~G~~~~a~~g~l~~~v--gG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~ 157 (273)
+..++ +.|+.++ .|...++. +++++.+++++++|+.+|. ++++++.-.-...-+... .-..+.
T Consensus 112 ---~~~~v~~~p~~p~~~~-----~g~~~~~~~~~~~~~~~~~~~~l~~~~G~-~~~~~e~~~d~~~a~~g~--gpa~~~ 180 (247)
T 3gt0_A 112 ---KVKVVRVMPNTPALVG-----EGMSALCPNEMVTEKDLEDVLNIFNSFGQ-TEIVSEKLMDVVTSVSGS--SPAYVY 180 (247)
T ss_dssp ---CCEEEEEECCGGGGGT-----CEEEEEEECTTCCHHHHHHHHHHHGGGEE-EEECCGGGHHHHHHHHHH--HHHHHH
T ss_pred ---CCcEEEEeCChHHHHc-----CceEEEEeCCCCCHHHHHHHHHHHHhCCC-EEEeCHHHccHHHHHhcc--HHHHHH
Confidence 12233 3444433 35544444 3688999999999999998 777765322222222221 123456
Q ss_pred HHHHHHHH-HHHcCCCHHHHHHHHhhcCCcccc
Q 024066 158 GVSEALTL-GQSLGISASTLTKILNSSSARCWS 189 (273)
Q Consensus 158 ~~~Ea~~l-a~~~Gl~~~~~~~~l~~~~~~s~~ 189 (273)
.+.|++.. +.+.|+++++.++++..+..+++.
T Consensus 181 ~~~eal~~a~~~~Gl~~~~a~~~~~~~~~gs~~ 213 (247)
T 3gt0_A 181 MIIEAMADAAVLDGMPRNQAYKFAAQAVLGSAK 213 (247)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 67777777 899999999999999987766654
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.5e-10 Score=104.78 Aligned_cols=143 Identities=15% Similarity=0.139 Sum_probs=100.7
Q ss_pred CCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCCC
Q 024066 8 PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWE 86 (273)
Q Consensus 8 ~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iii-d~ST~~P~~~~~l~~~~~~~g~~~~~g~~~ 86 (273)
+.+++++ ++++||+||.|||.+.+++..++. .+.+.+ +++.+|+ ++||+++. ++++.+... ++ ..
T Consensus 120 ~~t~dl~-al~~aDlVIeAVpe~~~vk~~v~~--~l~~~~--~~~aIlasnTSsl~i~---~ia~~~~~p---~r---~i 185 (460)
T 3k6j_A 120 KITSDFH-KLSNCDLIVESVIEDMKLKKELFA--NLENIC--KSTCIFGTNTSSLDLN---EISSVLRDP---SN---LV 185 (460)
T ss_dssp EEESCGG-GCTTCSEEEECCCSCHHHHHHHHH--HHHTTS--CTTCEEEECCSSSCHH---HHHTTSSSG---GG---EE
T ss_pred EEeCCHH-HHccCCEEEEcCCCCHHHHHHHHH--HHHhhC--CCCCEEEecCCChhHH---HHHHhccCC---cc---eE
Confidence 3567774 688999999999998777655543 244442 4556775 67777775 344433210 00 01
Q ss_pred CceEEEecCCCCHHHHhcCceEEEeec---CHHHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHH
Q 024066 87 NPVMLDAPVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEA 162 (273)
Q Consensus 87 g~~~ldapv~G~~~~a~~g~l~~~vgG---~~~~~~~~~~~l~~~~~~i~~~G~-~g~a~~~Kl~~n~~~~~~~~~~~Ea 162 (273)
|.+|.+ |+. ...+.-++.| +++++++++++++.+++.++++++ +| .++|+++. ..++|+
T Consensus 186 G~Hffn-Pv~-------~m~LvEIv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d~pG-----fi~Nril~----~~~~EA 248 (460)
T 3k6j_A 186 GIHFFN-PAN-------VIRLVEIIYGSHTSSQAIATAFQACESIKKLPVLVGNCKS-----FVFNRLLH----VYFDQS 248 (460)
T ss_dssp EEECCS-STT-------TCCEEEEECCSSCCHHHHHHHHHHHHHTTCEEEEESSCCH-----HHHHHHHH----HHHHHH
T ss_pred EEEecc-hhh-------hCCEEEEEeCCCCCHHHHHHHHHHHHHhCCEEEEEecccH-----HHHHHHHH----HHHHHH
Confidence 356666 554 2355556655 689999999999999999999998 45 35677665 358999
Q ss_pred HHHHHHcCCCHHHHHHHHh
Q 024066 163 LTLGQSLGISASTLTKILN 181 (273)
Q Consensus 163 ~~la~~~Gl~~~~~~~~l~ 181 (273)
+.++++.|++++++-+++.
T Consensus 249 ~~l~~~~Ga~~e~ID~a~~ 267 (460)
T 3k6j_A 249 QKLMYEYGYLPHQIDKIIT 267 (460)
T ss_dssp HHHHHTSCCCHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHH
Confidence 9999999999999988886
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.6e-11 Score=102.06 Aligned_cols=119 Identities=21% Similarity=0.239 Sum_probs=87.7
Q ss_pred cCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccC
Q 024066 4 DMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKD 83 (273)
Q Consensus 4 ~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g 83 (273)
+.|++.. ++.++++++|+||+|+|.. ++++++ + +... ..+++|||+++..|... +.+ +
T Consensus 59 ~~g~~~~-~~~~~~~~aDvVilav~~~-~~~~v~-~---l~~~---~~~~ivI~~~~G~~~~~------~~~------~- 116 (201)
T 2yjz_A 59 PRGAEVL-CYSEAASRSDVIVLAVHRE-HYDFLA-E---LADS---LKGRVLIDVSNNQKMNQ------YPE------S- 116 (201)
Confidence 3466655 7888999999999999985 677776 2 3221 24679999999998543 111 1
Q ss_pred CCCCceEEEecCCCCHH----------HHhcCce-----EEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHH
Q 024066 84 SWENPVMLDAPVSGGVL----------AAEAGTL-----TFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKIC 147 (273)
Q Consensus 84 ~~~g~~~ldapv~G~~~----------~a~~g~l-----~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~ 147 (273)
+..+++.|+.+++. ..+.|.+ .+++|++++.+++++++|+.+|.+++|+|+.|+|..+|.+
T Consensus 117 ---~~~~l~~~~~~~~vvra~~n~~a~~~~~g~l~g~~~~~~~g~~~~~~~~v~~ll~~~G~~~~~~G~l~~a~~~e~~ 192 (201)
T 2yjz_A 117 ---NAEYLAQLVPGAHVVKAFNTISAWALQSGTLDASRQVFVCGNDSKAKDRVMDIARTLGLTPLDQGSLVAAKEIENY 192 (201)
Confidence 24566666655433 3333443 6788888889999999999999999999999999999976
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.4e-09 Score=95.64 Aligned_cols=147 Identities=16% Similarity=0.257 Sum_probs=100.5
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCC
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSW 85 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iii-d~ST~~P~~~~~l~~~~~~~g~~~~~g~~ 85 (273)
.+.++++.|++++||+||+|||.+.+++..+.. .+.+.+ +++.+|+ ++||+++.+ +++.+... ++ .
T Consensus 88 i~~~~~~~~~~~~aD~Vi~avp~~~~~~~~v~~--~l~~~~--~~~~iv~s~ts~i~~~~---l~~~~~~~---~~---~ 154 (302)
T 1f0y_A 88 IATSTDAASVVHSTDLVVEAIVENLKVKNELFK--RLDKFA--AEHTIFASNTSSLQITS---IANATTRQ---DR---F 154 (302)
T ss_dssp EEEESCHHHHTTSCSEEEECCCSCHHHHHHHHH--HHTTTS--CTTCEEEECCSSSCHHH---HHTTSSCG---GG---E
T ss_pred eEEecCHHHhhcCCCEEEEcCcCcHHHHHHHHH--HHHhhC--CCCeEEEECCCCCCHHH---HHHhcCCc---cc---E
Confidence 345678888999999999999998766443322 233332 3456766 567777653 44333210 00 0
Q ss_pred CCceEEEecCCCCHHHHhcCceEEEeec---CHHHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHH
Q 024066 86 ENPVMLDAPVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSE 161 (273)
Q Consensus 86 ~g~~~ldapv~G~~~~a~~g~l~~~vgG---~~~~~~~~~~~l~~~~~~i~~~G~-~g~a~~~Kl~~n~~~~~~~~~~~E 161 (273)
.+.+|.+ |+. .+.+..+++| +++++++++++++.+|+.++++++ +| +++||++. ..++|
T Consensus 155 ~g~h~~~-P~~-------~~~~~~i~~g~~~~~e~~~~~~~l~~~~G~~~v~~~~~~g-----~i~nr~l~----~~~~E 217 (302)
T 1f0y_A 155 AGLHFFN-PVP-------VMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPG-----FIVNRLLV----PYLME 217 (302)
T ss_dssp EEEEECS-STT-------TCCEEEEECCTTCCHHHHHHHHHHHHHTTCEEEEECSCTT-----TTHHHHHH----HHHHH
T ss_pred EEEecCC-Ccc-------cCceEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCccc-----ccHHHHHH----HHHHH
Confidence 0244443 332 2355666776 788999999999999998899987 45 67777654 46899
Q ss_pred HHHHHHHcCCCHHHHHHHHhhc
Q 024066 162 ALTLGQSLGISASTLTKILNSS 183 (273)
Q Consensus 162 a~~la~~~Gl~~~~~~~~l~~~ 183 (273)
++.++++.|++++++-+++..+
T Consensus 218 a~~l~~~g~~~~~~id~~~~~g 239 (302)
T 1f0y_A 218 AIRLYERGDASKEDIDTAMKLG 239 (302)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHhC
Confidence 9999999999999988888654
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.04 E-value=2.4e-10 Score=99.37 Aligned_cols=149 Identities=16% Similarity=0.156 Sum_probs=103.2
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCC
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 85 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~ 85 (273)
|+ .+.++.+++++||+||+|+|++. ..+++.. +. .++++||++|+..|.+..+ +. . .
T Consensus 46 g~-~~~~~~~~~~~~DvVilav~~~~-~~~v~~~---l~-----~~~~ivi~~s~~~~~~~l~--~~--~------~--- 102 (276)
T 2i76_A 46 GG-KAATLEKHPELNGVVFVIVPDRY-IKTVANH---LN-----LGDAVLVHCSGFLSSEIFK--KS--G------R--- 102 (276)
T ss_dssp CC-CCCSSCCCCC---CEEECSCTTT-HHHHHTT---TC-----CSSCCEEECCSSSCGGGGC--SS--S------E---
T ss_pred CC-ccCCHHHHHhcCCEEEEeCChHH-HHHHHHH---hc-----cCCCEEEECCCCCcHHHHH--Hh--h------c---
Confidence 55 66788888889999999999975 6778753 32 2457999999887764321 11 0 0
Q ss_pred CCceEEEecCCCCHHHHh-cCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcCh---HHHHHHHHHHHHHHHHHHHHH
Q 024066 86 ENPVMLDAPVSGGVLAAE-AGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGN---GAAAKICNNLTMAVSMLGVSE 161 (273)
Q Consensus 86 ~g~~~ldapv~G~~~~a~-~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~---a~~~Kl~~n~~~~~~~~~~~E 161 (273)
+..+..+|++|++.... ...++++++|+++.++.++++++.+|.+++++++.+. -...++++|.+. ..+.|
T Consensus 103 -~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lG~~~~~v~~~~~~~~~~~~~l~~n~~~----~~~~~ 177 (276)
T 2i76_A 103 -ASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKYFVIPSEKKKAYHLAAVIASNFPV----ALAYL 177 (276)
T ss_dssp -EEEEECSCC--CTTGGGCGGGCCEEECCCTTTHHHHHHHHHHHCSCEEECCGGGHHHHHHHHHHHHTTHH----HHHHH
T ss_pred -cccchhhhcCCCchhHHHhCCCeEEEEeChHHHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 13455677888666554 4566788999988999999999999988999987543 345578888554 35678
Q ss_pred HHHHHHHcCCCHH--HHHHHHhh
Q 024066 162 ALTLGQSLGISAS--TLTKILNS 182 (273)
Q Consensus 162 a~~la~~~Gl~~~--~~~~~l~~ 182 (273)
+..++++.|++.+ .+.+++..
T Consensus 178 a~~~~~~~Gl~~~~a~~~~l~~~ 200 (276)
T 2i76_A 178 SKRIYTLLGLDEPELLIHTLMKG 200 (276)
T ss_dssp HHHHHHTTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHH
Confidence 8889999999987 55555554
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.98 E-value=3.2e-09 Score=92.11 Aligned_cols=133 Identities=13% Similarity=0.189 Sum_probs=100.0
Q ss_pred CCCC--CCCCHHHHHh-cCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhc
Q 024066 5 MGVP--TKETPFEVAE-ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEK 81 (273)
Q Consensus 5 ~Ga~--~~~s~~e~~~-~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~ 81 (273)
.|+. ..+++.++++ +||+||+|+|.. ...+++.. +.+.+ .++.+|++++++.+...+.+.+.+.+
T Consensus 45 ~g~~~~~~~~~~~~~~~~aDvVilavp~~-~~~~v~~~---l~~~l--~~~~iv~~~~~~~~~~~~~l~~~l~~------ 112 (281)
T 2g5c_A 45 LGIIDEGTTSIAKVEDFSPDFVMLSSPVR-TFREIAKK---LSYIL--SEDATVTDQGSVKGKLVYDLENILGK------ 112 (281)
T ss_dssp TTSCSEEESCGGGGGGTCCSEEEECSCHH-HHHHHHHH---HHHHS--CTTCEEEECCSCCTHHHHHHHHHHGG------
T ss_pred CCCcccccCCHHHHhcCCCCEEEEcCCHH-HHHHHHHH---HHhhC--CCCcEEEECCCCcHHHHHHHHHhccc------
Confidence 4554 3567888999 999999999986 55667642 44332 34579999999998887777776642
Q ss_pred cCCCCCceEEE-ecCCCC----HHHHh----cCceEEEe---ecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHH
Q 024066 82 KDSWENPVMLD-APVSGG----VLAAE----AGTLTFMV---GGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNN 149 (273)
Q Consensus 82 ~g~~~g~~~ld-apv~G~----~~~a~----~g~l~~~v---gG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n 149 (273)
.|++ .|+.|+ |..+. .|..++++ +++++.++.++++|+.+|.+++++++...+..+|++.|
T Consensus 113 -------~~v~~~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~~~~d~~~~~~~~ 185 (281)
T 2g5c_A 113 -------RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYMSPELHDYVFGVVSH 185 (281)
T ss_dssp -------GEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHTH
T ss_pred -------cceeeccccCCccCChhhhhhHHhCCCCEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHHH
Confidence 2566 577763 44443 56667777 77889999999999999998889988777999999999
Q ss_pred HHHHHHH
Q 024066 150 LTMAVSM 156 (273)
Q Consensus 150 ~~~~~~~ 156 (273)
......+
T Consensus 186 ~~~~~a~ 192 (281)
T 2g5c_A 186 LPHAVAF 192 (281)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8765433
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=5.6e-10 Score=109.16 Aligned_cols=141 Identities=18% Similarity=0.178 Sum_probs=98.3
Q ss_pred CCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCCC
Q 024066 8 PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWE 86 (273)
Q Consensus 8 ~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iii-d~ST~~P~~~~~l~~~~~~~g~~~~~g~~~ 86 (273)
+.++++ +++++||+||.|||.+.+++..++. .+.+.+ +++.+++ ++||+++. ++++.+... ++ ..
T Consensus 383 ~~~~d~-~~~~~aDlVIeaV~e~~~vk~~v~~--~l~~~~--~~~~IlasntStl~i~---~la~~~~~~---~~---~i 448 (715)
T 1wdk_A 383 RPTLSY-GDFGNVDLVVEAVVENPKVKQAVLA--EVENHV--REDAILASNTSTISIS---LLAKALKRP---EN---FV 448 (715)
T ss_dssp EEESSS-TTGGGCSEEEECCCSCHHHHHHHHH--HHHTTS--CTTCEEEECCSSSCHH---HHGGGCSCG---GG---EE
T ss_pred EEECCH-HHHCCCCEEEEcCCCCHHHHHHHHH--HHHhhC--CCCeEEEeCCCCCCHH---HHHHHhcCc---cc---eE
Confidence 456677 7789999999999999887665543 244432 3456776 67777776 344433210 00 01
Q ss_pred CceEEEecCCCCHHHHhcCceEEEeec---CHHHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHH
Q 024066 87 NPVMLDAPVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEA 162 (273)
Q Consensus 87 g~~~ldapv~G~~~~a~~g~l~~~vgG---~~~~~~~~~~~l~~~~~~i~~~G~-~g~a~~~Kl~~n~~~~~~~~~~~Ea 162 (273)
|.+|.+ |+.. +.+..++.| +++++++++++++.+|+.++++|+ +|. ++||++. ..++|+
T Consensus 449 g~hf~~-P~~~-------~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gf-----i~Nril~----~~~~Ea 511 (715)
T 1wdk_A 449 GMHFFN-PVHM-------MPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIVVNDCPGF-----LVNRVLF----PYFGGF 511 (715)
T ss_dssp EEECCS-STTT-------CCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESCTTT-----THHHHHH----HHHHHH
T ss_pred EEEccC-Cccc-------CceEEEEECCCCCHHHHHHHHHHHHHhCCEeEEEcCCCCh-----hhhHHHH----HHHHHH
Confidence 256655 5543 345555665 689999999999999999999998 563 5566554 468999
Q ss_pred HHHHHHcCCCHHHHHHHH
Q 024066 163 LTLGQSLGISASTLTKIL 180 (273)
Q Consensus 163 ~~la~~~Gl~~~~~~~~l 180 (273)
+.++++ |++++++.+++
T Consensus 512 ~~l~~~-G~~~~~id~~~ 528 (715)
T 1wdk_A 512 AKLVSA-GVDFVRIDKVM 528 (715)
T ss_dssp HHHHHT-TCCHHHHHHHH
T ss_pred HHHHHC-CCCHHHHHHHH
Confidence 999998 99999998888
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=3.1e-09 Score=94.11 Aligned_cols=133 Identities=13% Similarity=0.174 Sum_probs=101.0
Q ss_pred cCCC--CCCCCHHH-HHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhh
Q 024066 4 DMGV--PTKETPFE-VAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKE 80 (273)
Q Consensus 4 ~~Ga--~~~~s~~e-~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~ 80 (273)
+.|+ ..++++.+ ++++||+||+|||... +.+++. .+.+.+ +++.+|+|++++.+...+++.+.+.+
T Consensus 76 ~~G~~~~~~~~~~~~~~~~aDvVilavp~~~-~~~vl~---~l~~~l--~~~~iv~d~~Svk~~~~~~~~~~l~~----- 144 (314)
T 3ggo_A 76 DLGIIDEGTTSIAKVEDFSPDFVMLSSPVRT-FREIAK---KLSYIL--SEDATVTDQGSVKGKLVYDLENILGK----- 144 (314)
T ss_dssp HTTSCSEEESCTTGGGGGCCSEEEECSCGGG-HHHHHH---HHHHHS--CTTCEEEECCSCCTHHHHHHHHHHGG-----
T ss_pred HCCCcchhcCCHHHHhhccCCEEEEeCCHHH-HHHHHH---HHhhcc--CCCcEEEECCCCcHHHHHHHHHhcCC-----
Confidence 3465 34678888 8999999999999864 566764 354443 45689999999998888887776531
Q ss_pred ccCCCCCceEEE-ecCCCC----HHHHh----cCceEEEee---cCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHH
Q 024066 81 KKDSWENPVMLD-APVSGG----VLAAE----AGTLTFMVG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICN 148 (273)
Q Consensus 81 ~~g~~~g~~~ld-apv~G~----~~~a~----~g~l~~~vg---G~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~ 148 (273)
+|+. .|+.|+ +..+. .|.+.+++. ++++.+++++++++.+|.+++++++......++++.
T Consensus 145 --------~~v~~hPm~G~e~sG~~~A~~~Lf~g~~~il~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~~hD~~~a~~s 216 (314)
T 3ggo_A 145 --------RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYMSPELHDYVFGVVS 216 (314)
T ss_dssp --------GEECEEECCCCCCCSGGGCCTTTTTTCEEEECCCTTSCHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHT
T ss_pred --------CEEecCcccCCcccchhhhhhhhhcCCEEEEEeCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHH
Confidence 4777 799884 44444 567778874 578899999999999999999998888888888887
Q ss_pred HHHHHHH
Q 024066 149 NLTMAVS 155 (273)
Q Consensus 149 n~~~~~~ 155 (273)
.+-....
T Consensus 217 ~lph~~a 223 (314)
T 3ggo_A 217 HLPHAVA 223 (314)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655543
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.4e-08 Score=88.36 Aligned_cols=149 Identities=16% Similarity=0.136 Sum_probs=103.0
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCC
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSW 85 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iii-d~ST~~P~~~~~l~~~~~~~g~~~~~g~~ 85 (273)
.+.++++.+++++||+||.|+|...+++..++. .+.+.+ +++.+++ ++|+.++. ++++.+...
T Consensus 73 i~~~~~~~~~~~~aDlVi~av~~~~~~~~~v~~--~l~~~~--~~~~il~s~tS~~~~~---~la~~~~~~--------- 136 (283)
T 4e12_A 73 IRYSDDLAQAVKDADLVIEAVPESLDLKRDIYT--KLGELA--PAKTIFATNSSTLLPS---DLVGYTGRG--------- 136 (283)
T ss_dssp CEEESCHHHHTTTCSEEEECCCSCHHHHHHHHH--HHHHHS--CTTCEEEECCSSSCHH---HHHHHHSCG---------
T ss_pred eEEeCCHHHHhccCCEEEEeccCcHHHHHHHHH--HHHhhC--CCCcEEEECCCCCCHH---HHHhhcCCC---------
Confidence 456788999999999999999998655443332 244432 3567888 56666654 445544221
Q ss_pred CCceEEEecCCCCHHHHhcCceEEEeec---CHHHHHHHHHHHHHhcCCeEEeCC--cChHHHHHHHHHHHHHHHHHHHH
Q 024066 86 ENPVMLDAPVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVS 160 (273)
Q Consensus 86 ~g~~~ldapv~G~~~~a~~g~l~~~vgG---~~~~~~~~~~~l~~~~~~i~~~G~--~g~a~~~Kl~~n~~~~~~~~~~~ 160 (273)
.+++-.-.+. | +..+.+..++.| +++++++++++++.+++..++++. +|. ++|+++. ..+.
T Consensus 137 --~~~ig~h~~~-p--~~~~~lvevv~~~~t~~~~~~~~~~l~~~~g~~~v~v~~~~~g~-----i~nr~~~----~~~~ 202 (283)
T 4e12_A 137 --DKFLALHFAN-H--VWVNNTAEVMGTTKTDPEVYQQVVEFASAIGMVPIELKKEKAGY-----VLNSLLV----PLLD 202 (283)
T ss_dssp --GGEEEEEECS-S--TTTSCEEEEEECTTSCHHHHHHHHHHHHHTTCEEEECSSCCTTT-----THHHHHH----HHHH
T ss_pred --cceEEEccCC-C--cccCceEEEEeCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCE-----EehHHHH----HHHH
Confidence 1233222111 1 234577788887 578999999999999999999954 553 5566654 4689
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhcCC
Q 024066 161 EALTLGQSLGISASTLTKILNSSSA 185 (273)
Q Consensus 161 Ea~~la~~~Gl~~~~~~~~l~~~~~ 185 (273)
|++.+.++.+++++++-+++..+.+
T Consensus 203 ea~~l~~~g~~~~~~id~~~~~~~g 227 (283)
T 4e12_A 203 AAAELLVDGIADPETIDKTWRIGTG 227 (283)
T ss_dssp HHHHHHHTTSCCHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCHHHHHHHHHhccC
Confidence 9999999999999999999876543
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.90 E-value=1e-09 Score=107.50 Aligned_cols=143 Identities=17% Similarity=0.126 Sum_probs=99.4
Q ss_pred CCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCCC
Q 024066 8 PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWE 86 (273)
Q Consensus 8 ~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iii-d~ST~~P~~~~~l~~~~~~~g~~~~~g~~~ 86 (273)
+.++++ +++++||+||.|||.+.+++..++. .+.+.+ +++.+++ ++||+++.+ +++.+.. .....
T Consensus 381 ~~~~d~-~~~~~aDlVIeaVpe~~~vk~~v~~--~l~~~~--~~~~IlasntStl~i~~---la~~~~~------p~~~i 446 (725)
T 2wtb_A 381 KGSLDY-ESFRDVDMVIEAVIENISLKQQIFA--DLEKYC--PQHCILASNTSTIDLNK---IGERTKS------QDRIV 446 (725)
T ss_dssp EEESSS-GGGTTCSEEEECCCSCHHHHHHHHH--HHHHHS--CTTCEEEECCSSSCHHH---HTTTCSC------TTTEE
T ss_pred EEeCCH-HHHCCCCEEEEcCcCCHHHHHHHHH--HHHhhC--CCCcEEEeCCCCCCHHH---HHHHhcC------CCCEE
Confidence 345677 6789999999999999887665543 244432 3455664 677777753 3333311 00001
Q ss_pred CceEEEecCCCCHHHHhcCceEEEeec---CHHHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHH
Q 024066 87 NPVMLDAPVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEA 162 (273)
Q Consensus 87 g~~~ldapv~G~~~~a~~g~l~~~vgG---~~~~~~~~~~~l~~~~~~i~~~G~-~g~a~~~Kl~~n~~~~~~~~~~~Ea 162 (273)
|.+|.+ |+... .+..++.| +++++++++++++.+++.++++|+ +|. ++|+++. ..++|+
T Consensus 447 G~hf~~-P~~~~-------~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gf-----i~Nril~----~~~~Ea 509 (725)
T 2wtb_A 447 GAHFFS-PAHIM-------PLLEIVRTNHTSAQVIVDLLDVGKKIKKTPVVVGNCTGF-----AVNRMFF----PYTQAA 509 (725)
T ss_dssp EEEECS-STTTC-------CEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESSTTT-----THHHHHH----HHHHHH
T ss_pred EecCCC-CcccC-------ceEEEEECCCCCHHHHHHHHHHHHHhCCEEEEECCCccH-----HHHHHHH----HHHHHH
Confidence 356766 55432 45666666 789999999999999999999998 564 4566554 468999
Q ss_pred HHHHHHcCCCHHHHHHHHhhc
Q 024066 163 LTLGQSLGISASTLTKILNSS 183 (273)
Q Consensus 163 ~~la~~~Gl~~~~~~~~l~~~ 183 (273)
+.++++ |++++++.+++ .+
T Consensus 510 ~~l~~~-G~~~e~id~~~-~~ 528 (725)
T 2wtb_A 510 MFLVEC-GADPYLIDRAI-SK 528 (725)
T ss_dssp HHHHHT-TCCHHHHHHHH-HH
T ss_pred HHHHHC-CCCHHHHHHHH-HH
Confidence 999998 99999998888 44
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.89 E-value=1.1e-08 Score=89.79 Aligned_cols=144 Identities=15% Similarity=0.150 Sum_probs=103.8
Q ss_pred CHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEE
Q 024066 12 TPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML 91 (273)
Q Consensus 12 s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~~l 91 (273)
++.+++++||+||+|||.+. +.+++.. +.+.+ .++.+|+|++++.+...+++.+.+ +.+|+
T Consensus 58 ~~~~~~~~aDvVilavp~~~-~~~vl~~---l~~~l--~~~~iv~~~~svk~~~~~~~~~~~-------------~~~~v 118 (298)
T 2pv7_A 58 VAESILANADVVIVSVPINL-TLETIER---LKPYL--TENMLLADLTSVKREPLAKMLEVH-------------TGAVL 118 (298)
T ss_dssp GHHHHHTTCSEEEECSCGGG-HHHHHHH---HGGGC--CTTSEEEECCSCCHHHHHHHHHHC-------------SSEEE
T ss_pred CHHHHhcCCCEEEEeCCHHH-HHHHHHH---HHhhc--CCCcEEEECCCCCcHHHHHHHHhc-------------CCCEE
Confidence 57788999999999999875 7778753 44432 356799999999887776665432 14677
Q ss_pred Ee-cCCCCHHHHhcCceEEEeec-CHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 024066 92 DA-PVSGGVLAAEAGTLTFMVGG-SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSL 169 (273)
Q Consensus 92 da-pv~G~~~~a~~g~l~~~vgG-~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~ 169 (273)
.+ |++|+......|..++++.+ +++.+++++++|+.+|.+++++++......++++.+......+ .+.|++. +.
T Consensus 119 ~~hP~~g~~~~~~~g~~~~l~~~~~~~~~~~v~~l~~~~G~~~~~~~~~~~d~~~a~~~~~p~~~a~-~l~~~l~---~~ 194 (298)
T 2pv7_A 119 GLHPMFGADIASMAKQVVVRCDGRFPERYEWLLEQIQIWGAKIYQTNATEHDHNMTYIQALRHFSTF-ANGLHLS---KQ 194 (298)
T ss_dssp EEEECSCTTCSCCTTCEEEEEEEECGGGTHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHH-HHHHHHT---TS
T ss_pred eeCCCCCCCchhhcCCeEEEecCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHHHHHHHHHH-HHHHHHH---hc
Confidence 75 99887765556666666655 6788999999999999988888877778888888887555432 3333332 36
Q ss_pred CCCHHHHHH
Q 024066 170 GISASTLTK 178 (273)
Q Consensus 170 Gl~~~~~~~ 178 (273)
|++.+....
T Consensus 195 g~~~~~~~~ 203 (298)
T 2pv7_A 195 PINLANLLA 203 (298)
T ss_dssp SCCHHHHHH
T ss_pred CCCHHHHHh
Confidence 777665444
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.86 E-value=1.9e-08 Score=87.03 Aligned_cols=148 Identities=11% Similarity=0.172 Sum_probs=102.9
Q ss_pred CCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCc
Q 024066 9 TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENP 88 (273)
Q Consensus 9 ~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~ 88 (273)
..+++.++ .++|+||+|+|.+ .+.+++.. +.+.+ .++++||+++++.+...+++.+.+ .
T Consensus 48 ~~~~~~~~-~~~D~vi~av~~~-~~~~~~~~---l~~~~--~~~~~vv~~~~~~~~~~~~~~~~~--------------~ 106 (279)
T 2f1k_A 48 AGQDLSLL-QTAKIIFLCTPIQ-LILPTLEK---LIPHL--SPTAIVTDVASVKTAIAEPASQLW--------------S 106 (279)
T ss_dssp EESCGGGG-TTCSEEEECSCHH-HHHHHHHH---HGGGS--CTTCEEEECCSCCHHHHHHHHHHS--------------T
T ss_pred ccCCHHHh-CCCCEEEEECCHH-HHHHHHHH---HHhhC--CCCCEEEECCCCcHHHHHHHHHHh--------------C
Confidence 45678888 8999999999964 66777753 44432 346799999999988776665532 1
Q ss_pred eEEEe-cCCCC----HHHHh----cCceEEEee---cCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHH
Q 024066 89 VMLDA-PVSGG----VLAAE----AGTLTFMVG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSM 156 (273)
Q Consensus 89 ~~lda-pv~G~----~~~a~----~g~l~~~vg---G~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~ 156 (273)
+++.+ |+.|+ |..+. .+..++++. ++++.++.++++|+.++.+++++++.......|++.|.......
T Consensus 107 ~~~~~~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~~~~~~~p~~i~~ 186 (279)
T 2f1k_A 107 GFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVLEPLGVKIYLCTPADHDQAVAWISHLPVMVSA 186 (279)
T ss_dssp TCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHHHHHHHGGGTCEEEECCHHHHHHHHHHHTHHHHHHHH
T ss_pred CEeecCcccCCccCCHHHHhHHHhCCCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHhhHHHHHHH
Confidence 46766 88763 33332 344556653 47888999999999999889999888889999999997554433
Q ss_pred HHHHHHHHHHHHcCCC--HHHHHHHHh
Q 024066 157 LGVSEALTLGQSLGIS--ASTLTKILN 181 (273)
Q Consensus 157 ~~~~Ea~~la~~~Gl~--~~~~~~~l~ 181 (273)
++.++ +.+.|++ .+....++.
T Consensus 187 -al~~~---~~~~~~~~~~~~~~~l~~ 209 (279)
T 2f1k_A 187 -ALIQA---CAGEKDGDILKLAQNLAS 209 (279)
T ss_dssp -HHHHH---HHTCSCHHHHHHHHHHCC
T ss_pred -HHHHH---HHhcccccchhHHHhhcC
Confidence 44443 3356665 444444443
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.2e-08 Score=91.19 Aligned_cols=135 Identities=10% Similarity=0.125 Sum_probs=100.8
Q ss_pred ccCCCCCCCCHHHHHhc----CCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchh
Q 024066 3 SDMGVPTKETPFEVAEA----SDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCIL 78 (273)
Q Consensus 3 ~~~Ga~~~~s~~e~~~~----advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~ 78 (273)
.+.|+..++++.+++++ ||+||+|||. .++.+++.. +.+. .++.+|+|++++.+...+++.+.+.
T Consensus 48 ~~~G~~~~~~~~e~~~~a~~~aDlVilavP~-~~~~~vl~~---l~~~---~~~~iv~Dv~Svk~~i~~~~~~~~~---- 116 (341)
T 3ktd_A 48 VDEGFDVSADLEATLQRAAAEDALIVLAVPM-TAIDSLLDA---VHTH---APNNGFTDVVSVKTAVYDAVKARNM---- 116 (341)
T ss_dssp HHTTCCEESCHHHHHHHHHHTTCEEEECSCH-HHHHHHHHH---HHHH---CTTCCEEECCSCSHHHHHHHHHTTC----
T ss_pred HHcCCeeeCCHHHHHHhcccCCCEEEEeCCH-HHHHHHHHH---HHcc---CCCCEEEEcCCCChHHHHHHHHhCC----
Confidence 35678778899888764 7999999995 578888753 4432 3468999999999988877765432
Q ss_pred hhccCCCCCceEEE-ecCCCCH-HHHh-------cCceEEEeec---CHH--------HHHHHHHHHHHhcCCeEEeCCc
Q 024066 79 KEKKDSWENPVMLD-APVSGGV-LAAE-------AGTLTFMVGG---SED--------AYQAAKPLFLSMGKNTIYCGGA 138 (273)
Q Consensus 79 ~~~~g~~~g~~~ld-apv~G~~-~~a~-------~g~l~~~vgG---~~~--------~~~~~~~~l~~~~~~i~~~G~~ 138 (273)
+.+|++ .|+.|+. .+.. .|...+++.+ +++ .+++++++++.+|.+++++++-
T Consensus 117 --------~~~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~iltp~~~~~~e~~~~~~~~~~~~v~~l~~~~Ga~v~~~~~~ 188 (341)
T 3ktd_A 117 --------QHRYVGSHPMAGTANSGWSASMDGLFKRAVWVVTFDQLFDGTDINSTWISIWKDVVQMALAVGAEVVPSRVG 188 (341)
T ss_dssp --------GGGEECEEECCSCC-CCGGGCCSSTTTTCEEEECCGGGTSSCCCCHHHHHHHHHHHHHHHHTTCEEEECCHH
T ss_pred --------CCcEecCCccccccccchhhhhhHHhcCCeEEEEeCCCCChhhhccchHHHHHHHHHHHHHcCCEEEEeCHH
Confidence 257998 7999874 2222 2445778776 446 8999999999999999999887
Q ss_pred ChHHHHHHHHHHHHHHHH
Q 024066 139 GNGAAAKICNNLTMAVSM 156 (273)
Q Consensus 139 g~a~~~Kl~~n~~~~~~~ 156 (273)
..-..+.++..+-.....
T Consensus 189 ~HD~~~A~vshlPh~ia~ 206 (341)
T 3ktd_A 189 PHDAAAARVSHLTHILAE 206 (341)
T ss_dssp HHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHH
Confidence 788888888776655443
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=98.78 E-value=3.8e-09 Score=88.05 Aligned_cols=118 Identities=11% Similarity=0.115 Sum_probs=82.5
Q ss_pred HHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCH--H-------H----HHHHHHHHhhchhhhcc
Q 024066 16 VAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDP--Q-------T----SRNISAAVSNCILKEKK 82 (273)
Q Consensus 16 ~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P--~-------~----~~~l~~~~~~~g~~~~~ 82 (273)
++++||+||+|+| +.++++++.. +.+.+ . ++++|++++.-+ + + .+.+.+.+.
T Consensus 54 ~~~~aD~vi~av~-~~~~~~v~~~---l~~~~--~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~-------- 118 (209)
T 2raf_A 54 ATTLGEIVIMAVP-YPALAALAKQ---YATQL--K-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLP-------- 118 (209)
T ss_dssp CSSCCSEEEECSC-HHHHHHHHHH---THHHH--T-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCT--------
T ss_pred HhccCCEEEEcCC-cHHHHHHHHH---HHHhc--C-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCC--------
Confidence 5678999999999 6778888863 43332 3 679999988432 1 2 444554432
Q ss_pred CCCCCceEEE------ecCCCCHHHHhcCceEEEeecC-HHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHH
Q 024066 83 DSWENPVMLD------APVSGGVLAAEAGTLTFMVGGS-EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 152 (273)
Q Consensus 83 g~~~g~~~ld------apv~G~~~~a~~g~l~~~vgG~-~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~ 152 (273)
+.++++ +|.++.+.....+...++++|+ ++.+++++++|+.++.+++++|+.+.|..+|+++|++.
T Consensus 119 ----~~~vv~~~~~~~~p~~~~~~~~g~~~~~~~~~g~~~~~~~~v~~ll~~~G~~~~~~~~i~~a~~~K~i~~l~~ 191 (209)
T 2raf_A 119 ----DSQVLKAFNTTFAATLQSGQVNGKEPTTVLVAGNDDSAKQRFTRALADSPLEVKDAGKLKRARELEAMGFMQM 191 (209)
T ss_dssp ----TSEEEECSTTSCHHHHHHSEETTTEECEEEEEESCHHHHHHHHHHTTTSSCEEEEEESGGGHHHHHHHHHHHH
T ss_pred ----CCcEEEeeecccHhhccccccCCCCCceeEEcCCCHHHHHHHHHHHHHcCCceEeCCCHhHHHHhcchHHHHH
Confidence 256777 3333222111113456777876 57899999999999988999999999999999999863
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.74 E-value=3.1e-08 Score=92.17 Aligned_cols=142 Identities=13% Similarity=0.107 Sum_probs=96.8
Q ss_pred CCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCc
Q 024066 9 TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENP 88 (273)
Q Consensus 9 ~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~ 88 (273)
+++++ +++++||+||.|||.+.+++..++. .+.+.+ +++.+|+. ||+++..+ ++++.+... ++ ..|.
T Consensus 105 i~~~~-~~~~~aDlVIeaVpe~~~~k~~v~~--~l~~~~--~~~~ii~s-nTs~~~~~-~la~~~~~~---~~---~ig~ 171 (463)
T 1zcj_A 105 FSSST-KELSTVDLVVEAVFEDMNLKKKVFA--ELSALC--KPGAFLCT-NTSALNVD-DIASSTDRP---QL---VIGT 171 (463)
T ss_dssp EESCG-GGGTTCSEEEECCCSCHHHHHHHHH--HHHHHS--CTTCEEEE-CCSSSCHH-HHHTTSSCG---GG---EEEE
T ss_pred hcCCH-HHHCCCCEEEEcCCCCHHHHHHHHH--HHHhhC--CCCeEEEe-CCCCcCHH-HHHHHhcCC---cc---eEEe
Confidence 45666 5688999999999998766544332 243332 34566665 88887766 677654310 00 0125
Q ss_pred eEEEecCCCCHHHHhcCceEEEeec---CHHHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHH
Q 024066 89 VMLDAPVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALT 164 (273)
Q Consensus 89 ~~ldapv~G~~~~a~~g~l~~~vgG---~~~~~~~~~~~l~~~~~~i~~~G~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~ 164 (273)
+|. +|+.. ..+..++.| +++++++++++++.+++.++++++ +|. ++|+++.. .++|++.
T Consensus 172 hf~-~P~~~-------~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~~~~gf-----i~Nrll~~----~~~ea~~ 234 (463)
T 1zcj_A 172 HFF-SPAHV-------MRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGF-----VGNRMLAP----YYNQGFF 234 (463)
T ss_dssp EEC-SSTTT-------CCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEBCCSTTT-----THHHHHHH----HHHHHHH
T ss_pred ecC-CCccc-------ceeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEECCCccH-----HHHHHHHH----HHHHHHH
Confidence 665 66543 345555554 789999999999999999999998 564 44554433 3599999
Q ss_pred HHHHcCCCHHHHHHHHh
Q 024066 165 LGQSLGISASTLTKILN 181 (273)
Q Consensus 165 la~~~Gl~~~~~~~~l~ 181 (273)
+.++ |++++++-+++.
T Consensus 235 l~~~-G~~~~~id~~~~ 250 (463)
T 1zcj_A 235 LLEE-GSKPEDVDGVLE 250 (463)
T ss_dssp HHHT-TCCHHHHHHHHH
T ss_pred HHHc-CCCHHHHHHHHH
Confidence 9988 899999888886
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=98.69 E-value=4.6e-08 Score=85.15 Aligned_cols=113 Identities=14% Similarity=0.154 Sum_probs=82.2
Q ss_pred CCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccC-CCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCC
Q 024066 9 TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQG-GNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWEN 87 (273)
Q Consensus 9 ~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~-~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g 87 (273)
.+.++.+++++||+||+|+|.+.. ++++.. +.+. + .++.+|+|++++.+...+.+.+.+.++ +
T Consensus 56 ~~~~~~~~~~~aDvVilavp~~~~-~~v~~~---l~~~~l--~~~~ivi~~~~~~~~~~~~l~~~l~~~----------~ 119 (290)
T 3b1f_A 56 ATADFKVFAALADVIILAVPIKKT-IDFIKI---LADLDL--KEDVIITDAGSTKYEIVRAAEYYLKDK----------P 119 (290)
T ss_dssp EESCTTTTGGGCSEEEECSCHHHH-HHHHHH---HHTSCC--CTTCEEECCCSCHHHHHHHHHHHHTTS----------S
T ss_pred ccCCHHHhhcCCCEEEEcCCHHHH-HHHHHH---HHhcCC--CCCCEEEECCCCchHHHHHHHHhcccc----------C
Confidence 456888889999999999998654 777753 4333 3 346799999999998887777776431 2
Q ss_pred ceEEE-ecCCC----CHHHHh----cCceEEEe---ecCHHHHHHHHHHHHHhcCCeEEeCC
Q 024066 88 PVMLD-APVSG----GVLAAE----AGTLTFMV---GGSEDAYQAAKPLFLSMGKNTIYCGG 137 (273)
Q Consensus 88 ~~~ld-apv~G----~~~~a~----~g~l~~~v---gG~~~~~~~~~~~l~~~~~~i~~~G~ 137 (273)
++|+. .|++| +|..+. .|..++++ +++++.+++++++|+.+|.+++++++
T Consensus 120 ~~~v~~~P~~g~~~~g~~~a~~~l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~ 181 (290)
T 3b1f_A 120 VQFVGSHPMAGSHKSGAVAANVNLFENAYYIFSPSCLTKPNTIPALQDLLSGLHARYVEIDA 181 (290)
T ss_dssp CEEEEEEEC-----CCTTSCCTTTTTTSEEEEEECTTCCTTHHHHHHHHTGGGCCEEEECCH
T ss_pred CEEEEeCCcCCCCcchHHHhhHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence 67888 68877 555443 55544444 46788999999999999998888865
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.65 E-value=5.7e-08 Score=84.52 Aligned_cols=211 Identities=15% Similarity=0.089 Sum_probs=128.3
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccC-CCCCCCeEEEEc-CCCCHHHHHHHHHHHhhchhhhccC
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQG-GNSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKD 83 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~-~~~~~g~iiid~-ST~~P~~~~~l~~~~~~~g~~~~~g 83 (273)
|++.+.+..+++++||+||+|||. ..+++++.. +.+. + .++++||.. +.++. ..+.+++..
T Consensus 50 gi~~~~~~~~~~~~aDvVilav~p-~~~~~vl~~---l~~~~l--~~~~iiiS~~agi~~---~~l~~~l~~-------- 112 (280)
T 3tri_A 50 GVHTTQDNRQGALNADVVVLAVKP-HQIKMVCEE---LKDILS--ETKILVISLAVGVTT---PLIEKWLGK-------- 112 (280)
T ss_dssp CCEEESCHHHHHSSCSEEEECSCG-GGHHHHHHH---HHHHHH--TTTCEEEECCTTCCH---HHHHHHHTC--------
T ss_pred CCEEeCChHHHHhcCCeEEEEeCH-HHHHHHHHH---HHhhcc--CCCeEEEEecCCCCH---HHHHHHcCC--------
Confidence 888888999999999999999975 677888754 3322 2 234477754 44544 355555532
Q ss_pred CCCCceEEEecCCCCHHHHhcCceEEEeec---CHHHHHHHHHHHHHhcCCeEEeC-C--cChHHHHHHHHHHHHHHHHH
Q 024066 84 SWENPVMLDAPVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCG-G--AGNGAAAKICNNLTMAVSML 157 (273)
Q Consensus 84 ~~~g~~~ldapv~G~~~~a~~g~l~~~vgG---~~~~~~~~~~~l~~~~~~i~~~G-~--~g~a~~~Kl~~n~~~~~~~~ 157 (273)
+..++-+ +...|.....|. +.++.| +++.++.++++|+.+|+ ++++. + ......+.-..+.+.+..+.
T Consensus 113 ---~~~vvr~-mPn~p~~v~~g~-~~l~~~~~~~~~~~~~v~~l~~~iG~-~~~v~~E~~~d~~talsgsgpa~~~~~~e 186 (280)
T 3tri_A 113 ---ASRIVRA-MPNTPSSVRAGA-TGLFANETVDKDQKNLAESIMRAVGL-VIWVSSEDQIEKIAALSGSGPAYIFLIME 186 (280)
T ss_dssp ---CSSEEEE-ECCGGGGGTCEE-EEEECCTTSCHHHHHHHHHHHGGGEE-EEECSSHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred ---CCeEEEE-ecCChHHhcCcc-EEEEeCCCCCHHHHHHHHHHHHHCCC-eEEECCHHHhhHHHHHhccHHHHHHHHHH
Confidence 1233322 223344444333 455555 46889999999999998 56664 3 23333333334556666666
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCC-CCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCC
Q 024066 158 GVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYN-PVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDC 236 (273)
Q Consensus 158 ~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~-~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~a~~~g~~~ 236 (273)
++.|+ +.+.|+++++..+++..+..++..+-... .-|..+ .+.-.+|+.+ ....++..++.|++.
T Consensus 187 al~~a---~v~~Gl~~~~a~~l~~~t~~G~a~~~~~~~~~p~~l----~~~v~spgGt-------T~~~l~~le~~g~~~ 252 (280)
T 3tri_A 187 ALQEA---AEQLGLTKETAELLTEQTVLGAARMALETEQSVVQL----RQFVTSPGGT-------TEQAIKVLESGNLRE 252 (280)
T ss_dssp HHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHTCSSCHHHH----HHHHCCTTSH-------HHHHHHHHHTTCHHH
T ss_pred HHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHH----HHhccCCChH-------HHHHHHHHHHCChHH
Confidence 66666 66999999999998877543322110000 001111 1111233222 223667778889999
Q ss_pred hHHHHHHHHHHHHHHCC
Q 024066 237 PLTSQAQDIYAKLCENG 253 (273)
Q Consensus 237 ~~~~~~~~~~~~a~~~G 253 (273)
.+.+++...++++.+.|
T Consensus 253 ~~~~av~aa~~r~~el~ 269 (280)
T 3tri_A 253 LFIKALTAAVNRAKELS 269 (280)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998887643
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.3e-09 Score=92.54 Aligned_cols=125 Identities=15% Similarity=-0.004 Sum_probs=92.9
Q ss_pred CCCCHHHHH-hcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHH---HHHHHHHHhhchhhhccCC
Q 024066 9 TKETPFEVA-EASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQT---SRNISAAVSNCILKEKKDS 84 (273)
Q Consensus 9 ~~~s~~e~~-~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~---~~~l~~~~~~~g~~~~~g~ 84 (273)
.++|+.|++ .++|+|++|+|++...+.+.. .+ ..|+.+|+++|..+.. .+++.+.++++
T Consensus 39 ~~~~~~~l~~~~~DvVv~~~~~~~~~~~~~~----~l-----~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~-------- 101 (236)
T 2dc1_A 39 MVRGIDEFLQREMDVAVEAASQQAVKDYAEK----IL-----KAGIDLIVLSTGAFADRDFLSRVREVCRKT-------- 101 (236)
T ss_dssp EESSHHHHTTSCCSEEEECSCHHHHHHHHHH----HH-----HTTCEEEESCGGGGGSHHHHHHHHHHHHHH--------
T ss_pred hcCCHHHHhcCCCCEEEECCCHHHHHHHHHH----HH-----HCCCcEEEECcccCChHHHHHHHHHHHHhc--------
Confidence 456899998 689999999998755544432 33 2467899999987543 37888777653
Q ss_pred CCCce-EEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChH-HHHHHHHHHHHHHHH
Q 024066 85 WENPV-MLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNG-AAAKICNNLTMAVSM 156 (273)
Q Consensus 85 ~~g~~-~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a-~~~Kl~~n~~~~~~~ 156 (273)
|.. ++++|++|+...+..+.+ +++...++..+|.++.++.+++|.|+.+.+ ..+|..+|++....+
T Consensus 102 --g~~~~i~~~~~g~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~n~~~~~~~ 169 (236)
T 2dc1_A 102 --GRRVYIASGAIGGLDAIFSASE----LIEEIVLTTRKNWRQFGRKGVIFEGSASEAAQKFPKNLNVAATLSI 169 (236)
T ss_dssp --CCCEEECCTTCSCHHHHHHTGG----GEEEEEEEEEEEGGGTTSCEEEEEEEHHHHHHHSTTCCHHHHHHHH
T ss_pred --CCeEEecCccccChHHHHHhhc----cccEEEEEEEcChHHcCcceEEEeccHHHHHHHCCchHHHHHHHHH
Confidence 234 899999999999888885 777666777778888888888999986444 588888888764443
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=3.4e-07 Score=76.44 Aligned_cols=130 Identities=14% Similarity=0.127 Sum_probs=84.0
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHH----HHHHHhhchhhh
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRN----ISAAVSNCILKE 80 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~----l~~~~~~~g~~~ 80 (273)
.|++.. +..++++++|+||+|+|. ...++++. +.+. . ++++|||+++..+....+ ..+.+.+.
T Consensus 70 ~g~~~~-~~~~~~~~~DvVi~av~~-~~~~~v~~----l~~~--~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~---- 136 (215)
T 2vns_A 70 SAAQVT-FQEEAVSSPEVIFVAVFR-EHYSSLCS----LSDQ--L-AGKILVDVSNPTEQEHLQHRESNAEYLASL---- 136 (215)
T ss_dssp TTSEEE-EHHHHTTSCSEEEECSCG-GGSGGGGG----GHHH--H-TTCEEEECCCCCHHHHHHCSSCHHHHHHHH----
T ss_pred cCCcee-cHHHHHhCCCEEEECCCh-HHHHHHHH----HHHh--c-CCCEEEEeCCCcccccccccccHHHHHHHH----
Confidence 355554 788889999999999996 45566652 3222 2 467999999999865421 12222221
Q ss_pred ccCCCCCceEEE--ecCCCCHH--HHhcCc-eEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHH
Q 024066 81 KKDSWENPVMLD--APVSGGVL--AAEAGT-LTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLT 151 (273)
Q Consensus 81 ~~g~~~g~~~ld--apv~G~~~--~a~~g~-l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~ 151 (273)
-+ +.+++- .++++.+. ....+. ..++.|++++.+++++++|+.+|.+++++|+.|+|+.++.+.+++
T Consensus 137 l~----~~~vv~~~n~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~v~~ll~~~G~~~~~~g~~~~~~~~e~~~~~~ 208 (215)
T 2vns_A 137 FP----TCTVVKAFNVISAWTLQAGPRDGNRQVPICGDQPEAKRAVSEMALAMGFMPVDMGSLASAWEVEAMPLRL 208 (215)
T ss_dssp CT----TSEEEEECTTBCHHHHHTCSCSSCCEEEEEESCHHHHHHHHHHHHHTTCEEEECCSGGGHHHHHHSCCBC
T ss_pred CC----CCeEEeccccccHhHhcccccCCceeEEEecCCHHHHHHHHHHHHHcCCceEeecchhhhhHhhhhhhhh
Confidence 00 122332 22222211 111233 367788899999999999999999999999999999998665443
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.5e-07 Score=77.45 Aligned_cols=124 Identities=21% Similarity=0.245 Sum_probs=81.1
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCH------------HHHHHHHHHH
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDP------------QTSRNISAAV 73 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P------------~~~~~l~~~~ 73 (273)
|.....+..++++++|+||+|+|. ..+.+++.. +.+ . .+++||++++.-+ ...+++++.+
T Consensus 68 g~~~~~~~~~~~~~aDvVilavp~-~~~~~v~~~---l~~-~---~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l 139 (220)
T 4huj_A 68 GASVKAVELKDALQADVVILAVPY-DSIADIVTQ---VSD-W---GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELV 139 (220)
T ss_dssp TTTEEECCHHHHTTSSEEEEESCG-GGHHHHHTT---CSC-C---TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHS
T ss_pred CCCcccChHHHHhcCCEEEEeCCh-HHHHHHHHH---hhc-c---CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHC
Confidence 555556667778999999999994 577888864 332 1 3579999997653 2566677665
Q ss_pred hhchhhhccCCCCCceEEEecCCC-CHHHHhcCceEEEe-ecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHH
Q 024066 74 SNCILKEKKDSWENPVMLDAPVSG-GVLAAEAGTLTFMV-GGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 144 (273)
Q Consensus 74 ~~~g~~~~~g~~~g~~~ldapv~G-~~~~a~~g~l~~~v-gG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~ 144 (273)
..... -+ ...++.+++.. ++.. ..+...+++ |.++++.++++++|+.+|.+++++|+.++|..+
T Consensus 140 ~~~~v--v~----~~~~~~~~v~~~g~~~-~~~~~~v~~~g~~~~~~~~v~~l~~~~G~~~~~~G~l~~a~~~ 205 (220)
T 4huj_A 140 PGAKV--VK----AFNTLPAAVLAADPDK-GTGSRVLFLSGNHSDANRQVAELISSLGFAPVDLGTLAASGPI 205 (220)
T ss_dssp TTCEE--EE----ESCSSCHHHHTSCSBC-SSCEEEEEEEESCHHHHHHHHHHHHHTTCEEEECCSHHHHHHH
T ss_pred CCCCE--EE----CCCCCCHHHhhhCccc-CCCCeeEEEeCCCHHHHHHHHHHHHHhCCCeEeeCChhhcchh
Confidence 32100 00 02233445544 3332 223344455 446789999999999999999999998887554
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.17 E-value=4.7e-09 Score=92.82 Aligned_cols=104 Identities=20% Similarity=0.183 Sum_probs=75.6
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCC
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWE 86 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~ 86 (273)
++.++++.|+++++|+||+|+|.. +.++.+ +. ..+|++|+++||..|+. +++.+.+.++
T Consensus 184 ~~~~~~~~e~v~~aDiVi~atp~~---~~v~~~-----~~--l~~g~~vi~~g~~~p~~-~el~~~~~~~---------- 242 (312)
T 2i99_A 184 VRVCSSVQEAVAGADVIITVTLAT---EPILFG-----EW--VKPGAHINAVGASRPDW-RELDDELMKE---------- 242 (312)
T ss_dssp CEECSSHHHHHTTCSEEEECCCCS---SCCBCG-----GG--SCTTCEEEECCCCSTTC-CSBCHHHHHH----------
T ss_pred eEEeCCHHHHHhcCCEEEEEeCCC---CcccCH-----HH--cCCCcEEEeCCCCCCCc-eeccHHHHhc----------
Confidence 667889999999999999999953 334432 12 24568999999999975 7888777653
Q ss_pred CceEEE----ecC-CCCH---HHHhcCceEEEeecCHHHHHHHHHHHHHhcCC
Q 024066 87 NPVMLD----APV-SGGV---LAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKN 131 (273)
Q Consensus 87 g~~~ld----apv-~G~~---~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~ 131 (273)
+..|+| +|+ +|.. ..+..|+|..|++|+.+.+++..++|+.+|..
T Consensus 243 g~~~vD~~~~a~~~~G~~~~~~~~~~g~L~~~v~G~~~~~~~~~~vf~~~G~~ 295 (312)
T 2i99_A 243 AVLYVDSQEAALKESGDVLLSGAEIFAELGEVIKGVKPAHCEKTTVFKSLGMA 295 (312)
T ss_dssp SEEEESCHHHHHHHCHHHHTTTCCCCEEHHHHHHTSSCCCTTSCEEEECCCCH
T ss_pred CEEEECCHHHHHhhcCCcccChhhccccHHHHhCCCCCCCCCCcEEEECCChH
Confidence 268999 788 5655 44666789999999877666555555555543
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=98.10 E-value=6.8e-05 Score=66.04 Aligned_cols=207 Identities=10% Similarity=0.137 Sum_probs=120.0
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCC-CCHHHHHHHHHHHh-hchhhhccCCCCC
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST-IDPQTSRNISAAVS-NCILKEKKDSWEN 87 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST-~~P~~~~~l~~~~~-~~g~~~~~g~~~g 87 (273)
.+++.+ +..+|+||+|||.. ++++++.. +.+.+ .++++||.++. +.+. ..+.+.+. +. -+ +
T Consensus 78 ~~~~~~-~~~~D~vilavk~~-~~~~~l~~---l~~~l--~~~~~iv~~~nGi~~~--~~l~~~~~~~v----l~----g 140 (318)
T 3hwr_A 78 SSDPSA-VQGADLVLFCVKST-DTQSAALA---MKPAL--AKSALVLSLQNGVENA--DTLRSLLEQEV----AA----A 140 (318)
T ss_dssp ESCGGG-GTTCSEEEECCCGG-GHHHHHHH---HTTTS--CTTCEEEEECSSSSHH--HHHHHHCCSEE----EE----E
T ss_pred eCCHHH-cCCCCEEEEEcccc-cHHHHHHH---HHHhc--CCCCEEEEeCCCCCcH--HHHHHHcCCcE----EE----E
Confidence 455544 67899999999987 67888753 43332 34456665544 4443 35555542 10 00 1
Q ss_pred ceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHH--------------
Q 024066 88 PVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA-------------- 153 (273)
Q Consensus 88 ~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~-------------- 153 (273)
..+..+-.+|.......+.-.+.+|. .+..+++..+|..-+-++++..++-...-.|++.|....
T Consensus 141 ~~~~~a~~~gP~~~~~~~~g~~~ig~-~~~~~~l~~~l~~~~~~~~~~~Di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~ 219 (318)
T 3hwr_A 141 VVYVATEMAGPGHVRHHGRGELVIEP-TSHGANLAAIFAAAGVPVETSDNVRGALWAKLILNCAYNALSAITQLPYGRLV 219 (318)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEECC-CTTTHHHHHHHHHTTCCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHT
T ss_pred EEEEeEEEcCCeEEEEcCCceEEEcC-CHHHHHHHHHHHhCCCCcEechHHHHHHHHHHHHHhhhhHHHHHHCCCHHHHh
Confidence 22222333332111111222344555 344577888998888777666668889999999887432
Q ss_pred -------HHHHHHHHHHHHHHHcCCCH-----HHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHH
Q 024066 154 -------VSMLGVSEALTLGQSLGISA-----STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKD 221 (273)
Q Consensus 154 -------~~~~~~~Ea~~la~~~Gl~~-----~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD 221 (273)
....++.|+..++++.|++. +.+++++...... .+.|+.. +..+.. .-++..
T Consensus 220 ~~~~~~~l~~~~~~E~~~va~a~G~~l~~~~~~~~~~~~~~~~~~---------~sSM~qD-~~~gr~---tEid~i--- 283 (318)
T 3hwr_A 220 RGEGVEAVMRDVMEECFAVARAEGVKLPDDVALAIRRIAETMPRQ---------SSSTAQD-LARGKR---SEIDHL--- 283 (318)
T ss_dssp TSTTHHHHHHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHSTTC---------CCHHHHH-HHTTCC---CSGGGT---
T ss_pred cChhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCC---------CcHHHHH-HHcCCh---hHHHHH---
Confidence 23467899999999999874 2344444332211 1112110 111111 112222
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 024066 222 LNLALASAKEVGVDCPLTSQAQDIYAKLC 250 (273)
Q Consensus 222 ~~~~~~~a~~~g~~~~~~~~~~~~~~~a~ 250 (273)
...+++.+++.|+++|..+...++.+...
T Consensus 284 ~G~vv~~a~~~gv~tP~~~~l~~ll~~~e 312 (318)
T 3hwr_A 284 NGLIVRRGDALGIPVPANRVLHALVRLIE 312 (318)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 55688999999999999999988776543
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00015 Score=64.27 Aligned_cols=207 Identities=14% Similarity=0.119 Sum_probs=121.3
Q ss_pred CCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCH------------------HHHHHHH
Q 024066 9 TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDP------------------QTSRNIS 70 (273)
Q Consensus 9 ~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P------------------~~~~~l~ 70 (273)
..+++.+ +..+|+||+|||.. ++++++.. +.+.+ .++++||.+...-+ +..+.+.
T Consensus 61 ~~~~~~~-~~~~D~Vilavk~~-~~~~~~~~---l~~~l--~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~ 133 (335)
T 3ghy_A 61 ATHDAAA-LGEQDVVIVAVKAP-ALESVAAG---IAPLI--GPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIA 133 (335)
T ss_dssp EESCHHH-HCCCSEEEECCCHH-HHHHHHGG---GSSSC--CTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHH
T ss_pred EECCHHH-cCCCCEEEEeCCch-hHHHHHHH---HHhhC--CCCCEEEEECCCCccccccccccccccccccCCcHHHHH
Confidence 3467776 58899999999985 77888864 44432 34567887666621 1222444
Q ss_pred HHHhhchhhhccCCCCCceEEEe------cCCCCHHHHh-cCceEEEeec----CHHHHHHHHHHHHHhcCCeEEeCCcC
Q 024066 71 AAVSNCILKEKKDSWENPVMLDA------PVSGGVLAAE-AGTLTFMVGG----SEDAYQAAKPLFLSMGKNTIYCGGAG 139 (273)
Q Consensus 71 ~~~~~~g~~~~~g~~~g~~~lda------pv~G~~~~a~-~g~l~~~vgG----~~~~~~~~~~~l~~~~~~i~~~G~~g 139 (273)
+.+.. -.++.+ -..+ |..+. .+.-.+.+|- +.+..+++..+|+.-+-++++..++-
T Consensus 134 ~~~~~------------~~v~~gv~~~~a~~~~-pg~v~~~~~g~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~ 200 (335)
T 3ghy_A 134 QAIPT------------RHVLGCVVHLTCATVS-PGHIRHGNGRRLILGEPAGGASPRLASIAALFGRAGLQAECSEAIQ 200 (335)
T ss_dssp HHSCG------------GGEEEEEECCCEEESS-TTEEEECSCCEEEEECTTCSCCHHHHHHHHHHHHTTCEEEECSCHH
T ss_pred HhcCc------------ccEEEEEEEEEEEEcC-CcEEEECCCCeEEEecCCCCcCHHHHHHHHHHHhCCCCcEeCchHH
Confidence 44422 112222 1222 22221 1222355652 34566788888888777666655677
Q ss_pred hHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHcCCCH----HHHHHHHhhcCCcccccccCC
Q 024066 140 NGAAAKICNNLT---------------------MAVSMLGVSEALTLGQSLGISA----STLTKILNSSSARCWSSDSYN 194 (273)
Q Consensus 140 ~a~~~Kl~~n~~---------------------~~~~~~~~~Ea~~la~~~Gl~~----~~~~~~l~~~~~~s~~~~~~~ 194 (273)
...-.|++.|.. ......++.|+..++++.|+++ +.++++....+.+
T Consensus 201 ~~~w~Kl~~na~~N~l~al~~~~~g~~~~~~~~~~l~~~~~~E~~~va~a~G~~~~~~~~~~~~~~~~~~~~-------- 272 (335)
T 3ghy_A 201 RDIWFKLWGNMTMNPVSVLTGATCDRILDDPLVSAFCLAVMAEAKAIGARIGCPIEQSGEARSAVTRQLGAF-------- 272 (335)
T ss_dssp HHHHHHHHTTTTHHHHHHHHCCCHHHHHHSHHHHHHHHHHHHHHHHHHHTTTCCCCSCHHHHHHHHHTTCSC--------
T ss_pred HHHHHHHHHHhhhhHHHHHhCCChHHHhcChHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHhccCCC--------
Confidence 777788765542 3455688999999999999865 3444444432211
Q ss_pred CCCCcccCCCCCCCCCCCc-chhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 024066 195 PVPGVMEGVPASRNYGGGF-ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCE 251 (273)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~f-~~~~~~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~ 251 (273)
.+.|+ .|+..+- .. -...=...+++.+++.|+++|..+...++.+....
T Consensus 273 -~sSM~------qD~~~gr~~t-Eid~i~G~vv~~a~~~gv~~P~~~~l~~li~~~e~ 322 (335)
T 3ghy_A 273 -KTSML------QDAEAGRGPL-EIDALVASVREIGLHVGVPTPQIDTLLGLVRLHAQ 322 (335)
T ss_dssp -CCTTT------C-----CCCC-CHHHHTHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred -CcHHH------HHHHcCCCCc-hHHHHhhHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 12222 1222211 11 12223567889999999999999999988876544
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=97.90 E-value=5.4e-05 Score=66.72 Aligned_cols=206 Identities=12% Similarity=0.062 Sum_probs=118.9
Q ss_pred CCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCC-CHHHHHHHHHHHhhchhhhccCCCCC
Q 024066 9 TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI-DPQTSRNISAAVSNCILKEKKDSWEN 87 (273)
Q Consensus 9 ~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~-~P~~~~~l~~~~~~~g~~~~~g~~~g 87 (273)
..+++.++.+.+|+||+||+... +++++.. +.+.+ .++++||.+... .+. +.+.+.+..
T Consensus 61 ~~~~~~~~~~~~DlVilavK~~~-~~~~l~~---l~~~l--~~~t~Iv~~~nGi~~~--~~l~~~~~~------------ 120 (320)
T 3i83_A 61 VVRSAAELETKPDCTLLCIKVVE-GADRVGL---LRDAV--APDTGIVLISNGIDIE--PEVAAAFPD------------ 120 (320)
T ss_dssp EESCGGGCSSCCSEEEECCCCCT-TCCHHHH---HTTSC--CTTCEEEEECSSSSCS--HHHHHHSTT------------
T ss_pred eECCHHHcCCCCCEEEEecCCCC-hHHHHHH---HHhhc--CCCCEEEEeCCCCChH--HHHHHHCCC------------
Confidence 45677777778999999999874 4555542 33322 234566655443 332 344444422
Q ss_pred ceEEEecCCCCHHHH------hcCceEEEee----cCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHH-----
Q 024066 88 PVMLDAPVSGGVLAA------EAGTLTFMVG----GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM----- 152 (273)
Q Consensus 88 ~~~ldapv~G~~~~a------~~g~l~~~vg----G~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~----- 152 (273)
-.++.+|++-+.... ..+.-.+.+| .+.+..+++..+|+.-+-++++..++-...--|++.|..+
T Consensus 121 ~~vl~g~~~~~a~~~~pg~v~~~~~~~~~ig~~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~N~lta 200 (320)
T 3i83_A 121 NEVISGLAFIGVTRTAPGEIWHQAYGRLMLGNYPGGVSERVKTLAAAFEEAGIDGIATENITTARWQKCVWNAAFNPLSV 200 (320)
T ss_dssp SCEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHHHTTSCEEECSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEEeceEEcCCCEEEECCCCEEEEecCCCCccHHHHHHHHHHHhCCCCceECHHHHHHHHHHHHHHHhhhHHHH
Confidence 235555543211111 1112245555 3446678888899888877777777888999999987632
Q ss_pred ---------------HHHHHHHHHHHHHHHHcCCCH-----HHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCC
Q 024066 153 ---------------AVSMLGVSEALTLGQSLGISA-----STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 212 (273)
Q Consensus 153 ---------------~~~~~~~~Ea~~la~~~Gl~~-----~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (273)
.....++.|+..++++.|++. +.++++....+.+ .+.|+.. +..+..
T Consensus 201 l~~~~~g~~~~~~~~~l~~~~~~E~~~va~a~G~~l~~~~~~~~~~~~~~~~~~---------~sSM~qD-~~~gr~--- 267 (320)
T 3i83_A 201 LSGGLDTLDILSTQEGFVRAIMQEIRAVAAANGHPLPEDIVEKNVASTYKMPPY---------KTSMLVD-FEAGQP--- 267 (320)
T ss_dssp HTTSCCHHHHHHHCHHHHHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHSCCC---------CCHHHHH-HHHTCC---
T ss_pred HHCCCHHHHHhCcHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCC---------CCcHHHH-HHhCCC---
Confidence 123467889999999999874 2333333322110 0111110 001110
Q ss_pred cchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 024066 213 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLC 250 (273)
Q Consensus 213 f~~~~~~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~ 250 (273)
.-++. =...+++.+++.|+++|..+...++++...
T Consensus 268 tEid~---i~G~vv~~a~~~gv~~P~~~~l~~~l~~~e 302 (320)
T 3i83_A 268 METEV---ILGNAVRAGRRTRVAIPHLESVYALMKLLE 302 (320)
T ss_dssp CCHHH---HTHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred chHHH---HccHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 00111 145688999999999999999887775543
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.89 E-value=6.7e-05 Score=63.18 Aligned_cols=100 Identities=11% Similarity=0.097 Sum_probs=70.3
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCce
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPV 89 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~ 89 (273)
.+.+.+ +++|| |+|+|++ ++.+++. ++.+.+ .++++|+|+|...+.. +.+.+.++ |+.
T Consensus 35 ~~~~~~-~~~aD--ilavP~~-ai~~vl~---~l~~~l--~~g~ivvd~sgs~~~~---vl~~~~~~----------g~~ 92 (232)
T 3dfu_A 35 LHAPED-IRDFE--LVVIDAH-GVEGYVE---KLSAFA--RRGQMFLHTSLTHGIT---VMDPLETS----------GGI 92 (232)
T ss_dssp CSSGGG-GGGCS--EEEECSS-CHHHHHH---HHHTTC--CTTCEEEECCSSCCGG---GGHHHHHT----------TCE
T ss_pred ecCHHH-hccCC--EEEEcHH-HHHHHHH---HHHHhc--CCCCEEEEECCcCHHH---HHHHHHhC----------CCc
Confidence 344544 67899 8999997 7788875 355442 4568999987665532 22222222 367
Q ss_pred EE-EecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcC
Q 024066 90 ML-DAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAG 139 (273)
Q Consensus 90 ~l-dapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g 139 (273)
|+ .-|+.|.+ ..+.+++++.++.++++++.+|.+++++++-.
T Consensus 93 fvg~HPm~g~~--------~~i~a~d~~a~~~l~~L~~~lG~~vv~~~~~~ 135 (232)
T 3dfu_A 93 VMSAHPIGQDR--------WVASALDELGETIVGLLVGELGGSIVEIADDK 135 (232)
T ss_dssp EEEEEEEETTE--------EEEEESSHHHHHHHHHHHHHTTCEECCCCGGG
T ss_pred EEEeeeCCCCc--------eeeeCCCHHHHHHHHHHHHHhCCEEEEeCHHH
Confidence 77 48997653 56667788899999999999999999998743
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00033 Score=61.40 Aligned_cols=214 Identities=10% Similarity=0.061 Sum_probs=118.3
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCC-CCHHHHHHHHHHHhhchhhhccCCCCCc
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST-IDPQTSRNISAAVSNCILKEKKDSWENP 88 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST-~~P~~~~~l~~~~~~~g~~~~~g~~~g~ 88 (273)
.+++.+ +..+|+||+||+.. ++++++.. +.+.+ .++++||-+.. +.+. ..+.+.+... + -..++
T Consensus 61 ~~~~~~-~~~~D~vilavk~~-~~~~~l~~---l~~~l--~~~~~iv~l~nGi~~~--~~l~~~~~~~----~--v~~~~ 125 (312)
T 3hn2_A 61 YRAPEE-IGPMDLVLVGLKTF-ANSRYEEL---IRPLV--EEGTQILTLQNGLGNE--EALATLFGAE----R--IIGGV 125 (312)
T ss_dssp ESCHHH-HCCCSEEEECCCGG-GGGGHHHH---HGGGC--CTTCEEEECCSSSSHH--HHHHHHTCGG----G--EEEEE
T ss_pred ecCHHH-cCCCCEEEEecCCC-CcHHHHHH---HHhhc--CCCCEEEEecCCCCcH--HHHHHHCCCC----c--EEEEE
Confidence 456654 67899999999976 45566643 33322 23456665544 3443 3455554321 0 00012
Q ss_pred eEEEecCCCCHHHHhcCceEEEeec----CHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHH-----------
Q 024066 89 VMLDAPVSGGVLAAEAGTLTFMVGG----SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA----------- 153 (273)
Q Consensus 89 ~~ldapv~G~~~~a~~g~l~~~vgG----~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~----------- 153 (273)
.+..+-..|.-.-...+.-.+.+|. +.+..+.+..+|+.-+-++++..+.-...--|++.|..+.
T Consensus 126 ~~~~a~~~~p~~v~~~~~g~~~ig~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~G 205 (312)
T 3hn2_A 126 AFLCSNRGEPGEVHHLGAGRIILGEFLPRDTGRIEELAAMFRQAGVDCRTTDDLKRARWEKLVWNIPFNGLCALLQQPVN 205 (312)
T ss_dssp EEEECCBCSSSEEEECEEEEEEEEESSCCCSHHHHHHHHHHHHTTCCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHH
T ss_pred EEeeeEEcCCcEEEECCCCeEEEecCCCCccHHHHHHHHHHHhCCCCcEEChHHHHHHHHHHHHHHhHHHHHHHHCCCHH
Confidence 2222323322111111222455553 3456678888888878776666667788899998887532
Q ss_pred ----------HHHHHHHHHHHHHHHcC--CCH-----HHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchh
Q 024066 154 ----------VSMLGVSEALTLGQSLG--ISA-----STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASK 216 (273)
Q Consensus 154 ----------~~~~~~~Ea~~la~~~G--l~~-----~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 216 (273)
....++.|+..++++.| ++. +.++++....+.+ .+.|+.. +..+.. --++
T Consensus 206 ~l~~~~~~~~l~~~~~~E~~~va~a~G~~~~~~~~~~~~~~~~~~~~~~~---------~sSM~qD-~~~gr~---tEid 272 (312)
T 3hn2_A 206 LILARDVSRKLVRGIMLEVIAGANAQGLATFIADGYVDDMLEFTDAMGEY---------KPSMEID-REEGRP---LEIA 272 (312)
T ss_dssp HHTTSHHHHHHHHHHHHHHHHHHHTSCCSSCCCTTHHHHHHHHHTTSCSC---------CCHHHHH-HHTTCC---CCHH
T ss_pred HHHhChhHHHHHHHHHHHHHHHHHHcCCccCCCHHHHHHHHHHHhcCCCC---------CchHHHH-HHhCCC---ccHH
Confidence 23456789999999999 653 2233332221110 1111110 111110 0011
Q ss_pred hHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCC
Q 024066 217 LMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGH 254 (273)
Q Consensus 217 ~~~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~G~ 254 (273)
. =...+++.+++.|+++|..+...++++.....|+
T Consensus 273 ~---i~G~vv~~a~~~gv~~P~~~~l~~ll~~~~~~~~ 307 (312)
T 3hn2_A 273 A---IFRTPLAYGAREGIAMPRVEMLATLLEQATGEGH 307 (312)
T ss_dssp H---HTHHHHHHHHHTTCCCHHHHHHHHHHHHHTTC--
T ss_pred H---HhhHHHHHHHHhCCCCCHHHHHHHHHHHHHhccc
Confidence 1 2456889999999999999999999988777665
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00018 Score=64.03 Aligned_cols=151 Identities=13% Similarity=0.073 Sum_probs=87.3
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCC
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 84 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~ 84 (273)
.|+... ++.+++++||+||+|+|+... .+++.. .+.+.+ +++++|++++++.. .+ +.+.. .
T Consensus 59 ~G~~~~-~~~e~~~~aDvVilavp~~~~-~~v~~~--~i~~~l--~~~~ivi~~~gv~~----~~-~~~~~-----~--- 119 (338)
T 1np3_A 59 HGLKVA-DVKTAVAAADVVMILTPDEFQ-GRLYKE--EIEPNL--KKGATLAFAHGFSI----HY-NQVVP-----R--- 119 (338)
T ss_dssp TTCEEE-CHHHHHHTCSEEEECSCHHHH-HHHHHH--HTGGGC--CTTCEEEESCCHHH----HT-TSSCC-----C---
T ss_pred CCCEEc-cHHHHHhcCCEEEEeCCcHHH-HHHHHH--HHHhhC--CCCCEEEEcCCchh----HH-HhhcC-----C---
Confidence 466555 888999999999999998754 677751 244432 35678998865322 11 11110 0
Q ss_pred CCCceEE-EecCCCCHHH------HhcCceEEEe---ecCHHHHHHHHHHHHHhcC-C--eEEeCCcChHHHHHHHHH-H
Q 024066 85 WENPVML-DAPVSGGVLA------AEAGTLTFMV---GGSEDAYQAAKPLFLSMGK-N--TIYCGGAGNGAAAKICNN-L 150 (273)
Q Consensus 85 ~~g~~~l-dapv~G~~~~------a~~g~l~~~v---gG~~~~~~~~~~~l~~~~~-~--i~~~G~~g~a~~~Kl~~n-~ 150 (273)
.++.++ ..| +|.... ...|...+++ +.+++.++.++.+++.+|. + ++.+.....-....+..+ .
T Consensus 120 -~~~~vv~~~P-~gp~~a~~~l~~~G~g~~~ii~~~~~~~~~a~~~~~~l~~~lG~~~agv~~~~~~~~~~~~~~~s~~~ 197 (338)
T 1np3_A 120 -ADLDVIMIAP-KAPGHTVRSEFVKGGGIPDLIAIYQDASGNAKNVALSYACGVGGGRTGIIETTFKDETETDLFGEQAV 197 (338)
T ss_dssp -TTCEEEEEEE-SSCSHHHHHHHHTTCCCCEEEEEEECSSSCHHHHHHHHHHHTTHHHHCEEECCHHHHHHHHHHHHHHT
T ss_pred -CCcEEEeccC-CCCchhHHHHHhccCCCeEEEEecCCCCHHHHHHHHHHHHHcCCCccceEeechhcccchHHHHHHHH
Confidence 124454 356 433221 1225544433 2356788999999999998 5 666643333444445544 2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHH
Q 024066 151 TMAVSMLGVSEALTLGQSLGISASTL 176 (273)
Q Consensus 151 ~~~~~~~~~~Ea~~la~~~Gl~~~~~ 176 (273)
+..+....++.++....+.|++++..
T Consensus 198 l~G~lp~~ia~~~e~l~~~Gl~~~~a 223 (338)
T 1np3_A 198 LCGGCVELVKAGFETLVEAGYAPEMA 223 (338)
T ss_dssp TTHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HhhhHHHHHHHHHHHHHHcCCCHHHH
Confidence 33333444444454555789998643
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00043 Score=64.79 Aligned_cols=132 Identities=11% Similarity=0.119 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHhcC--CeEEeCCc-------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHh
Q 024066 117 AYQAAKPLFLSMGK--NTIYCGGA-------GNGAAAKICNNLTMAVSMLGVSEALTLGQS------LGISASTLTKILN 181 (273)
Q Consensus 117 ~~~~~~~~l~~~~~--~i~~~G~~-------g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~------~Gl~~~~~~~~l~ 181 (273)
+|.++.+.++.... ...+.|+. +.++.+|++.|.+.++.+.+++|++.+.++ .++|...+.++++
T Consensus 291 v~ar~~s~~k~~r~~~~~~~~gp~~~~~~~~~~~~~~~~v~~al~~~~i~syaqGf~ll~~as~~~~w~l~~~~ia~iwr 370 (497)
T 2p4q_A 291 VFARCLSALKNERIRASKVLPGPEVPKDAVKDREQFVDDLEQALYASKIISYAQGFMLIREAAATYGWKLNNPAIALMWR 370 (497)
T ss_dssp HHHHHHHHCHHHHHHHHHHCCCCCCCTTSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHhhcchhhHHHHhhhcCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Confidence 45555555543321 12445664 479999999999999999999999999998 7999999999999
Q ss_pred hcC-CcccccccCCCCCCcccCCCCCCC--CCCCcc--hhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 024066 182 SSS-ARCWSSDSYNPVPGVMEGVPASRN--YGGGFA--SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCE 251 (273)
Q Consensus 182 ~~~-~~s~~~~~~~~~~~~~~~~~~~~~--~~~~f~--~~~~~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~ 251 (273)
.++ -+||+++.... .+.+...-.+ ++|-|. +.......|.++..|.+.|+|+|.+.+++..|+.-..
T Consensus 371 ~GciIrs~~l~~i~~---a~~~~~~l~~l~~~~~f~~~~~~~~~~~r~~v~~a~~~gvp~P~~s~aL~~~~~~~~ 442 (497)
T 2p4q_A 371 GGCIIRSVFLGQITK---AYREEPDLENLLFNKFFADAVTKAQSGWRKSIALATTYGIPTPAFSTALSFYDGYRS 442 (497)
T ss_dssp SSSTTCBHHHHHHHH---HHHHCTTCSCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTC
T ss_pred cCCchHHHHHHHHHH---HHhcCCChhhhhcCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Confidence 765 56666542211 0000000000 112232 3333456889999999999999999999998776443
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00046 Score=64.16 Aligned_cols=132 Identities=10% Similarity=0.115 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHhcC--CeEEeCCc-----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhhc
Q 024066 117 AYQAAKPLFLSMGK--NTIYCGGA-----GNGAAAKICNNLTMAVSMLGVSEALTLGQS------LGISASTLTKILNSS 183 (273)
Q Consensus 117 ~~~~~~~~l~~~~~--~i~~~G~~-----g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~------~Gl~~~~~~~~l~~~ 183 (273)
+|.++.+.++.... ...|.|+. +.++.+|+++|.+.++.+.+++|++.+.++ .++|...+..+++.+
T Consensus 288 v~ar~~s~~k~~r~~~~~~~~g~~~~~~~~~~~~~~~v~~al~~~~~~~yaqGf~ll~~a~~~~~~~l~~~~ia~~wr~G 367 (474)
T 2iz1_A 288 VFARYISTYKDERVKASKVLSGPALDFSGDKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWDLPYGTIAQIWRAG 367 (474)
T ss_dssp HHHHHHHHCHHHHHHHHHHCCCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTSSS
T ss_pred HHHHHhhhhhhhhHHhhhccCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcc
Confidence 35555555443211 11345664 889999999999999999999999999998 799999999999876
Q ss_pred C-CcccccccCCCCCCcccCCCCCCC--CCCCcc--hhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 024066 184 S-ARCWSSDSYNPVPGVMEGVPASRN--YGGGFA--SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCE 251 (273)
Q Consensus 184 ~-~~s~~~~~~~~~~~~~~~~~~~~~--~~~~f~--~~~~~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~ 251 (273)
+ -+||+++...+ .+.+...-.+ ++|.|. +.......|.++..|.+.|+|+|.+.+++..|+.-..
T Consensus 368 ciirs~~l~~i~~---a~~~~~~l~~l~~~~~~~~~~~~~~~~~r~~v~~a~~~~~p~p~~s~al~~~~~~~~ 437 (474)
T 2iz1_A 368 CIIRAEFLQNITD---AFDKDSELENLLLDDYFVDITKRYQEAVRDVVSLAVQAGTPIPTFTSAISYYDSYRS 437 (474)
T ss_dssp CTTCBTTHHHHHH---HHHHCTTCCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHH---HHhcCCChhhhhcCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Confidence 5 56665542110 0000000000 112232 3333456899999999999999999999998776543
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00056 Score=63.69 Aligned_cols=117 Identities=13% Similarity=0.134 Sum_probs=83.5
Q ss_pred EEeCCc-----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhhcC-CcccccccCCCCCCcc
Q 024066 133 IYCGGA-----GNGAAAKICNNLTMAVSMLGVSEALTLGQS------LGISASTLTKILNSSS-ARCWSSDSYNPVPGVM 200 (273)
Q Consensus 133 ~~~G~~-----g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~------~Gl~~~~~~~~l~~~~-~~s~~~~~~~~~~~~~ 200 (273)
.+.|+. +.++.+|++.|.+.++.+.+++|++.+.++ .++|...+.++++.++ -+||+++...+ .+
T Consensus 314 ~~~g~~~~~~~~~~~~~~~v~~al~~~~~~syaqGf~ll~~as~~~~w~l~~~~ia~iwr~GciIrs~~l~~i~~---a~ 390 (480)
T 2zyd_A 314 VLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIFRAGCIIRAQFLQKITD---AC 390 (480)
T ss_dssp TCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTSSSSTTCBTHHHHHHH---HH
T ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCcchHHHHHHHHHH---HH
Confidence 345664 889999999999999999999999999998 7999999999998765 56666542211 00
Q ss_pred cCCCCCCC--CCCCcc--hhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHC
Q 024066 201 EGVPASRN--YGGGFA--SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCEN 252 (273)
Q Consensus 201 ~~~~~~~~--~~~~f~--~~~~~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~ 252 (273)
.+...-.+ ++|-|. +.......|.++..|.+.|+|+|.+.+++..|+.-...
T Consensus 391 ~~~~~l~~l~~~~~f~~~~~~~~~~~r~~v~~a~~~gvp~p~~s~al~~~~~~~~~ 446 (480)
T 2zyd_A 391 AENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNGIPVPTFSAAVAYYDSYRAA 446 (480)
T ss_dssp HHCTTCSCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCS
T ss_pred hcCCChHhhhcCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccC
Confidence 00000000 112232 33334568899999999999999999999988765443
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0011 Score=61.79 Aligned_cols=109 Identities=11% Similarity=0.131 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhhcC-CcccccccCCCCCCcccCCCCCCC--CCC
Q 024066 141 GAAAKICNNLTMAVSMLGVSEALTLGQSL------GISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVPASRN--YGG 211 (273)
Q Consensus 141 a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~------Gl~~~~~~~~l~~~~-~~s~~~~~~~~~~~~~~~~~~~~~--~~~ 211 (273)
++.+|+++|.+..+.+.+++|++.+.++. ++|...+..+++.+. -+||+++...+ .+.+...-.+ ++|
T Consensus 316 ~~~~~~v~~al~~~~~~syaqGf~ll~~as~~~~w~l~~~~ia~~wr~Gciirs~~l~~i~~---a~~~~~~l~~l~~~~ 392 (482)
T 2pgd_A 316 KSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKD---AFDRNPGLQNLLLDD 392 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSSSTTCBTHHHHHHH---HHHHCTTCSCGGGSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCcchHHHHHHHHHH---HHhcCCChhhhhcCH
Confidence 89999999999999999999999999883 899999999998765 56665542110 0000000000 112
Q ss_pred Cc--chhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHC
Q 024066 212 GF--ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCEN 252 (273)
Q Consensus 212 ~f--~~~~~~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~ 252 (273)
.| .+.......|.++..|.+.|+|+|.+.+++..|+.-...
T Consensus 393 ~~~~~~~~~~~~~r~~v~~a~~~g~p~p~~s~al~~~~~~~~~ 435 (482)
T 2pgd_A 393 FFKSAVENCQDSWRRAISTGVQAGIPMPCFTTALSFYDGYRHA 435 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccC
Confidence 22 233344668999999999999999999999977765544
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00025 Score=61.74 Aligned_cols=80 Identities=15% Similarity=0.168 Sum_probs=61.6
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCC
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWE 86 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~ 86 (273)
+...+++.|++++||+|++|+|..++++.++.. ..++.+ ++|.++||+|+..+-..+.+.+.+.+.
T Consensus 161 ~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~--~~l~~m--k~gailIN~aRG~~vd~~aL~~aL~~g---------- 226 (290)
T 3gvx_A 161 DVISESPADLFRQSDFVLIAIPLTDKTRGMVNS--RLLANA--RKNLTIVNVARADVVSKPDMIGFLKER---------- 226 (290)
T ss_dssp SEECSSHHHHHHHCSEEEECCCCCTTTTTCBSH--HHHTTC--CTTCEEEECSCGGGBCHHHHHHHHHHC----------
T ss_pred ccccCChHHHhhccCeEEEEeeccccchhhhhH--HHHhhh--hcCceEEEeehhcccCCcchhhhhhhc----------
Confidence 345679999999999999999988887776632 355554 467899999999999999999999763
Q ss_pred CceEEEecCCCCHH
Q 024066 87 NPVMLDAPVSGGVL 100 (273)
Q Consensus 87 g~~~ldapv~G~~~ 100 (273)
++......|+...+
T Consensus 227 ~i~ga~lDV~~~EP 240 (290)
T 3gvx_A 227 SDVWYLSDVWWNEP 240 (290)
T ss_dssp TTCEEEESCCTTTT
T ss_pred cceEEeeccccCCc
Confidence 24556666666544
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00049 Score=53.12 Aligned_cols=67 Identities=15% Similarity=0.145 Sum_probs=50.6
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCC
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 84 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~ 84 (273)
.|.++.+|++|+.+.+|++++|+| ++.+.+++.+ +.+. .-+.+|+++||. ++++.+.++++
T Consensus 55 ~G~~~~~s~~el~~~vDlvii~vp-~~~v~~v~~~---~~~~---g~~~i~~~~~~~----~~~l~~~a~~~-------- 115 (138)
T 1y81_A 55 EGLKCYRSVRELPKDVDVIVFVVP-PKVGLQVAKE---AVEA---GFKKLWFQPGAE----SEEIRRFLEKA-------- 115 (138)
T ss_dssp TTEECBSSGGGSCTTCCEEEECSC-HHHHHHHHHH---HHHT---TCCEEEECTTSC----CHHHHHHHHHH--------
T ss_pred CCeeecCCHHHhCCCCCEEEEEeC-HHHHHHHHHH---HHHc---CCCEEEEcCccH----HHHHHHHHHHC--------
Confidence 478889999999999999999999 5788888853 4432 124689999886 46666666653
Q ss_pred CCCceEEE
Q 024066 85 WENPVMLD 92 (273)
Q Consensus 85 ~~g~~~ld 92 (273)
|+++++
T Consensus 116 --Gi~~ig 121 (138)
T 1y81_A 116 --GVEYSF 121 (138)
T ss_dssp --TCEEEC
T ss_pred --CCEEEc
Confidence 378887
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00058 Score=60.94 Aligned_cols=67 Identities=13% Similarity=0.092 Sum_probs=54.8
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 76 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~ 76 (273)
|+..+.++.|++++||+|++|+|..++.+.++.. ..++.+ +++.++||+|+..+-..+.+.+.+.+.
T Consensus 210 g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~--~~l~~m--k~gailIN~arg~~vd~~aL~~aL~~g 276 (347)
T 1mx3_A 210 GLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLIND--FTVKQM--RQGAFLVNTARGGLVDEKALAQALKEG 276 (347)
T ss_dssp TCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSH--HHHTTS--CTTEEEEECSCTTSBCHHHHHHHHHHT
T ss_pred CCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhHH--HHHhcC--CCCCEEEECCCChHHhHHHHHHHHHhC
Confidence 6666678999999999999999998877776632 355554 467899999999999999999999763
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.00091 Score=58.53 Aligned_cols=66 Identities=8% Similarity=0.045 Sum_probs=53.6
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
|.....++.|++++||+|++|+|..++.+.++.. ..++.+ ++|.++||+|+..+-....+.+.+.+
T Consensus 161 ~~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~--~~l~~m--k~gailin~srg~~vd~~aL~~aL~~ 226 (303)
T 1qp8_A 161 PWRFTNSLEEALREARAAVCALPLNKHTRGLVKY--QHLALM--AEDAVFVNVGRAEVLDRDGVLRILKE 226 (303)
T ss_dssp SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCH--HHHTTS--CTTCEEEECSCGGGBCHHHHHHHHHH
T ss_pred CcccCCCHHHHHhhCCEEEEeCcCchHHHHHhCH--HHHhhC--CCCCEEEECCCCcccCHHHHHHHHHh
Confidence 3445678999999999999999999888777632 355554 46789999999999888899998876
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.00092 Score=51.97 Aligned_cols=60 Identities=17% Similarity=0.121 Sum_probs=45.2
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
.|.++.+|++|+.+.+|++++|+|+ +.+.+++.+ +.+. ..+.+|++++|. .+++.+.+++
T Consensus 56 ~G~~~~~sl~el~~~~Dlvii~vp~-~~v~~v~~~---~~~~---g~~~i~i~~~~~----~~~l~~~a~~ 115 (145)
T 2duw_A 56 LGQQGYATLADVPEKVDMVDVFRNS-EAAWGVAQE---AIAI---GAKTLWLQLGVI----NEQAAVLARE 115 (145)
T ss_dssp TTEECCSSTTTCSSCCSEEECCSCS-THHHHHHHH---HHHH---TCCEEECCTTCC----CHHHHHHHHT
T ss_pred CCeeccCCHHHcCCCCCEEEEEeCH-HHHHHHHHH---HHHc---CCCEEEEcCChH----HHHHHHHHHH
Confidence 4788889999999999999999995 677888753 4332 124688998877 5667777665
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0014 Score=58.26 Aligned_cols=67 Identities=15% Similarity=0.243 Sum_probs=34.1
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
.++....|+.|++++||+|++|+|..++++.++.. ..++.+ +++.++||+++..+-....+.+.+.+
T Consensus 208 ~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~--~~l~~m--k~gailIN~aRG~vvde~aL~~aL~~ 274 (340)
T 4dgs_A 208 VDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDA--SLLQAL--GPEGIVVNVARGNVVDEDALIEALKS 274 (340)
T ss_dssp SCCEECSSHHHHHHTCSEEEECC----------CH--HHHHHT--TTTCEEEECSCC--------------
T ss_pred cCceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhH--HHHhcC--CCCCEEEECCCCcccCHHHHHHHHHc
Confidence 34556789999999999999999988888887742 355554 46789999999999999999999875
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.00053 Score=61.31 Aligned_cols=69 Identities=16% Similarity=0.139 Sum_probs=57.1
Q ss_pred cCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 024066 4 DMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 76 (273)
Q Consensus 4 ~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~ 76 (273)
+.|++.++|+.|++++||+|++|+|..++.+.++.. ..++.+ ++|.++||+|+..+-..+.+.+.+.+.
T Consensus 200 ~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~--~~l~~m--k~gailIN~aRg~~vd~~aL~~aL~~g 268 (352)
T 3gg9_A 200 ADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITV--ADLTRM--KPTALFVNTSRAELVEENGMVTALNRG 268 (352)
T ss_dssp HTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCBCH--HHHTTS--CTTCEEEECSCGGGBCTTHHHHHHHHT
T ss_pred hcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhhCH--HHHhhC--CCCcEEEECCCchhhcHHHHHHHHHhC
Confidence 468888889999999999999999988887776632 355554 467899999999999999999999763
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0014 Score=59.68 Aligned_cols=66 Identities=18% Similarity=0.187 Sum_probs=51.0
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
++..+.|+.|++++||+|++|+|..++.+.++.. ..++.+ ++|.++||+|+..+-..+.+.+.+.+
T Consensus 195 ~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~--~~l~~m--k~gailIN~aRG~vvd~~aL~~aL~~ 260 (416)
T 3k5p_A 195 NVKPAASLDELLKTSDVVSLHVPSSKSTSKLITE--AKLRKM--KKGAFLINNARGSDVDLEALAKVLQE 260 (416)
T ss_dssp TBEECSSHHHHHHHCSEEEECCCC-----CCBCH--HHHHHS--CTTEEEEECSCTTSBCHHHHHHHHHT
T ss_pred CcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcCH--HHHhhC--CCCcEEEECCCChhhhHHHHHHHHHc
Confidence 4556789999999999999999999888877632 355554 56799999999999999999999976
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0012 Score=58.10 Aligned_cols=67 Identities=10% Similarity=0.105 Sum_probs=53.2
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
.|++.++++.|++++||+|++|+|..++.+.++.. ..++.+ +++.++||+|+..+-....+.+.+.+
T Consensus 188 ~g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~--~~l~~m--k~gailIn~arg~~vd~~aL~~aL~~ 254 (320)
T 1gdh_A 188 YQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNK--ATIKSL--PQGAIVVNTARGDLVDNELVVAALEA 254 (320)
T ss_dssp HTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSH--HHHTTS--CTTEEEEECSCGGGBCHHHHHHHHHH
T ss_pred cCcEEcCCHHHHHhhCCEEEEeccCchHHHhhcCH--HHHhhC--CCCcEEEECCCCcccCHHHHHHHHHh
Confidence 46776668999999999999999998777766532 344544 46789999999988888888888875
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.15 Score=45.87 Aligned_cols=31 Identities=13% Similarity=0.020 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHHHC
Q 024066 222 LNLALASAKEVGVDCPLTSQAQDIYAKLCEN 252 (273)
Q Consensus 222 ~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~ 252 (273)
+..+.+.+++.|+++|+.+.+.+++......
T Consensus 334 ~~~v~~la~~~gV~tP~~~~l~~l~~~~~~~ 364 (404)
T 3c7a_A 334 MIVFKGVAIAAGVAIPSNDKLIMWAQEKIGK 364 (404)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHhCCCCchHHHHHHHHHHHhCc
Confidence 4467899999999999999999998877554
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0017 Score=57.36 Aligned_cols=62 Identities=10% Similarity=0.219 Sum_probs=52.9
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
..|+.|++++||+|++|+|..++++.++.. ..++.+ ++|.++||+|+..+-..+.+.+.+.+
T Consensus 185 ~~~l~ell~~aDvV~l~lPlt~~T~~li~~--~~l~~m--k~gailIN~aRG~~vde~aL~~aL~~ 246 (324)
T 3hg7_A 185 LPALNKMLAQADVIVSVLPATRETHHLFTA--SRFEHC--KPGAILFNVGRGNAINEGDLLTALRT 246 (324)
T ss_dssp GGGHHHHHHTCSEEEECCCCCSSSTTSBCT--TTTTCS--CTTCEEEECSCGGGBCHHHHHHHHHT
T ss_pred cCCHHHHHhhCCEEEEeCCCCHHHHHHhHH--HHHhcC--CCCcEEEECCCchhhCHHHHHHHHHc
Confidence 468999999999999999988888877753 466654 56789999999999999999999976
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0011 Score=59.15 Aligned_cols=67 Identities=16% Similarity=0.225 Sum_probs=56.0
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
.|++.++++.|++++||+|++|+|..++.+.++.. ..++.+ +++.++||+++..+-..+.+.+.+.+
T Consensus 206 ~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~--~~l~~m--k~gailIN~aRG~~vde~aL~~aL~~ 272 (351)
T 3jtm_A 206 TGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNK--ELIGKL--KKGVLIVNNARGAIMERQAVVDAVES 272 (351)
T ss_dssp HCCEECSCHHHHGGGCSEEEECSCCCTTTTTCBSH--HHHHHS--CTTEEEEECSCGGGBCHHHHHHHHHH
T ss_pred CCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcH--HHHhcC--CCCCEEEECcCchhhCHHHHHHHHHh
Confidence 47777889999999999999999988777766632 355554 56799999999999999999999976
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0012 Score=60.13 Aligned_cols=65 Identities=15% Similarity=0.126 Sum_probs=54.4
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
+..+.|+.|++++||+|++|+|..++.+.++.. +.++.+ ++|.++||+|+..+-..+.+.+.+.+
T Consensus 185 ~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~--~~l~~m--k~ga~lIN~aRg~~vd~~aL~~aL~~ 249 (404)
T 1sc6_A 185 ATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGA--KEISLM--KPGSLLINASRGTVVDIPALADALAS 249 (404)
T ss_dssp CEECSCHHHHHHHCSEEEECCCSSTTTTTCBCH--HHHHHS--CTTEEEEECSCSSSBCHHHHHHHHHT
T ss_pred ceecCCHHHHHhcCCEEEEccCCChHHHHHhhH--HHHhhc--CCCeEEEECCCChHHhHHHHHHHHHc
Confidence 566779999999999999999999888877632 355554 56799999999999999999999876
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0013 Score=58.48 Aligned_cols=66 Identities=15% Similarity=0.140 Sum_probs=55.0
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
|++.++++.|++++||+|++|+|..++.+.++.. ..++.+ ++|.++||+|...+-..+.+.+.+.+
T Consensus 214 g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~--~~l~~m--k~gailIN~aRG~~vde~aL~~aL~~ 279 (345)
T 4g2n_A 214 GAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDH--DRIAKI--PEGAVVINISRGDLINDDALIEALRS 279 (345)
T ss_dssp TCEECSSHHHHHHTCSEEEECSCCCGGGTTCBCH--HHHHHS--CTTEEEEECSCGGGBCHHHHHHHHHH
T ss_pred CCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCH--HHHhhC--CCCcEEEECCCCchhCHHHHHHHHHh
Confidence 6777789999999999999999988887766632 355554 56799999999999999999999876
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.002 Score=57.13 Aligned_cols=66 Identities=11% Similarity=0.085 Sum_probs=53.1
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
.|+.. .++.|++++||+|++|+|..++.+.++. ...++.+ +++.++||+|+..+-....+.+.+.+
T Consensus 206 ~g~~~-~~l~ell~~aDvV~l~~P~t~~t~~li~--~~~l~~m--k~gailIN~arg~vvd~~aL~~aL~~ 271 (335)
T 2g76_A 206 FGVQQ-LPLEEIWPLCDFITVHTPLLPSTTGLLN--DNTFAQC--KKGVRVVNCARGGIVDEGALLRALQS 271 (335)
T ss_dssp TTCEE-CCHHHHGGGCSEEEECCCCCTTTTTSBC--HHHHTTS--CTTEEEEECSCTTSBCHHHHHHHHHH
T ss_pred cCcee-CCHHHHHhcCCEEEEecCCCHHHHHhhC--HHHHhhC--CCCcEEEECCCccccCHHHHHHHHHh
Confidence 46654 4899999999999999999988777663 2355554 46789999999999888899998876
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0017 Score=58.23 Aligned_cols=68 Identities=18% Similarity=0.191 Sum_probs=55.1
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 76 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~ 76 (273)
.|+..++++.|++++||+|++|+|..++.+.++.. ..++.+ +++.++||+++..+-..+.+.+.+.+.
T Consensus 207 ~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~--~~l~~m--k~ga~lIn~arG~~vd~~aL~~aL~~g 274 (364)
T 2j6i_A 207 VGARRVENIEELVAQADIVTVNAPLHAGTKGLINK--ELLSKF--KKGAWLVNTARGAICVAEDVAAALESG 274 (364)
T ss_dssp TTEEECSSHHHHHHTCSEEEECCCCSTTTTTCBCH--HHHTTS--CTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred cCcEecCCHHHHHhcCCEEEECCCCChHHHHHhCH--HHHhhC--CCCCEEEECCCCchhCHHHHHHHHHcC
Confidence 46666678999999999999999998887776632 345554 467899999999998889999999763
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0018 Score=57.73 Aligned_cols=66 Identities=14% Similarity=0.147 Sum_probs=52.9
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
|++.++++.+++++||+|++|+|...+.+.++.. ..++.+ +++.++||+|+..+-..+.+.+.+.+
T Consensus 207 g~~~~~~l~ell~~aDvVil~vp~~~~t~~li~~--~~l~~m--k~gailin~srg~~vd~~aL~~aL~~ 272 (348)
T 2w2k_A 207 GAERVDSLEELARRSDCVSVSVPYMKLTHHLIDE--AFFAAM--KPGSRIVNTARGPVISQDALIAALKS 272 (348)
T ss_dssp TCEECSSHHHHHHHCSEEEECCCCSGGGTTCBCH--HHHHHS--CTTEEEEECSCGGGBCHHHHHHHHHT
T ss_pred CcEEeCCHHHHhccCCEEEEeCCCChHHHHHhhH--HHHhcC--CCCCEEEECCCCchhCHHHHHHHHHh
Confidence 6666678999999999999999998877766532 244443 46789999999999988899998875
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0019 Score=56.96 Aligned_cols=62 Identities=11% Similarity=0.228 Sum_probs=51.5
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
..++.|++++||+|++|+|..++.+.++.. ..++.+ ++|.++||+|+..+-..+.+.+.+.+
T Consensus 182 ~~~l~ell~~aDvV~l~lPlt~~t~~li~~--~~l~~m--k~gailIN~aRG~~vd~~aL~~aL~~ 243 (324)
T 3evt_A 182 FTATADALATANFIVNALPLTPTTHHLFST--ELFQQT--KQQPMLINIGRGPAVDTTALMTALDH 243 (324)
T ss_dssp GGGCHHHHHHCSEEEECCCCCGGGTTCBSH--HHHHTC--CSCCEEEECSCGGGBCHHHHHHHHHT
T ss_pred cCCHHHHHhhCCEEEEcCCCchHHHHhcCH--HHHhcC--CCCCEEEEcCCChhhhHHHHHHHHHh
Confidence 357889999999999999988887777642 355554 46789999999999999999999976
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0026 Score=57.65 Aligned_cols=67 Identities=13% Similarity=0.107 Sum_probs=54.2
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
.|++.+.++.|++++||+|++++|..++.+.++.. ..++.+ +++.++||+|+..+-..+.+.+.+.+
T Consensus 233 ~G~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~--~~l~~m--k~gailIN~aRG~~vde~aL~~aL~~ 299 (393)
T 2nac_A 233 LNLTWHATREDMYPVCDVVTLNCPLHPETEHMIND--ETLKLF--KRGAYIVNTARGKLCDRDAVARALES 299 (393)
T ss_dssp HTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSH--HHHTTS--CTTEEEEECSCGGGBCHHHHHHHHHT
T ss_pred cCceecCCHHHHHhcCCEEEEecCCchHHHHHhhH--HHHhhC--CCCCEEEECCCchHhhHHHHHHHHHc
Confidence 36666678999999999999999988777766632 355554 46789999999999888899999875
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0034 Score=59.14 Aligned_cols=66 Identities=9% Similarity=0.183 Sum_probs=53.3
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
.|+..+ ++.|++++||+|++|+|..++++.++.. .+++.+ +++.++||+++..+-...++.+.+.+
T Consensus 183 ~g~~~~-~l~e~~~~aDvV~l~~P~~~~t~~~i~~--~~~~~~--k~g~ilin~arg~iv~~~aL~~al~~ 248 (529)
T 1ygy_A 183 LGIELL-SLDDLLARADFISVHLPKTPETAGLIDK--EALAKT--KPGVIIVNAARGGLVDEAALADAITG 248 (529)
T ss_dssp HTCEEC-CHHHHHHHCSEEEECCCCSTTTTTCBCH--HHHTTS--CTTEEEEECSCTTSBCHHHHHHHHHT
T ss_pred cCcEEc-CHHHHHhcCCEEEECCCCchHHHHHhCH--HHHhCC--CCCCEEEECCCCchhhHHHHHHHHHc
Confidence 466655 8999999999999999998787777642 245543 46799999999999998899998865
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0023 Score=57.43 Aligned_cols=67 Identities=21% Similarity=0.150 Sum_probs=52.7
Q ss_pred cCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 4 DMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 4 ~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
+.|++. .++.|++++||+|++|+|..++.+.++.. ..++.+ ++|.++||+|+..+-....+.+.+.+
T Consensus 216 ~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~li~~--~~l~~m--k~gailIN~aRG~~vde~aL~~aL~~ 282 (365)
T 4hy3_A 216 ENGVEP-ASLEDVLTKSDFIFVVAAVTSENKRFLGA--EAFSSM--RRGAAFILLSRADVVDFDALMAAVSS 282 (365)
T ss_dssp HTTCEE-CCHHHHHHSCSEEEECSCSSCC---CCCH--HHHHTS--CTTCEEEECSCGGGSCHHHHHHHHHT
T ss_pred hcCeee-CCHHHHHhcCCEEEEcCcCCHHHHhhcCH--HHHhcC--CCCcEEEECcCCchhCHHHHHHHHHc
Confidence 346654 58999999999999999999888877642 456654 46789999999999999999999976
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0015 Score=57.36 Aligned_cols=67 Identities=9% Similarity=0.080 Sum_probs=52.5
Q ss_pred cCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 4 DMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 4 ~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
+.|++. .++.|++++||+|++|+|..++.+.++.. ..++.+ +++.++||+|+..+-..+.+.+.+.+
T Consensus 182 ~~g~~~-~~l~ell~~aDvVvl~~P~~~~t~~li~~--~~l~~m--k~ga~lIn~arg~~vd~~aL~~aL~~ 248 (313)
T 2ekl_A 182 KINAKA-VSLEELLKNSDVISLHVTVSKDAKPIIDY--PQFELM--KDNVIIVNTSRAVAVNGKALLDYIKK 248 (313)
T ss_dssp HTTCEE-CCHHHHHHHCSEEEECCCCCTTSCCSBCH--HHHHHS--CTTEEEEESSCGGGBCHHHHHHHHHT
T ss_pred hcCcee-cCHHHHHhhCCEEEEeccCChHHHHhhCH--HHHhcC--CCCCEEEECCCCcccCHHHHHHHHHc
Confidence 346664 48999999999999999998877665531 344443 46789999999999999999999875
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0019 Score=57.24 Aligned_cols=66 Identities=14% Similarity=0.162 Sum_probs=52.4
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
|+....++.|++++||+|++++|...+++.++.. ..++.+ +++.++||+|+..+...+.+.+.+.+
T Consensus 202 g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~--~~l~~m--k~gailIn~srG~~vd~~aL~~aL~~ 267 (333)
T 3ba1_A 202 NYTYYGSVVELASNSDILVVACPLTPETTHIINR--EVIDAL--GPKGVLINIGRGPHVDEPELVSALVE 267 (333)
T ss_dssp CSEEESCHHHHHHTCSEEEECSCCCGGGTTCBCH--HHHHHH--CTTCEEEECSCGGGBCHHHHHHHHHH
T ss_pred CceecCCHHHHHhcCCEEEEecCCChHHHHHhhH--HHHhcC--CCCCEEEECCCCchhCHHHHHHHHHc
Confidence 5555678999999999999999998777766531 244443 45689999999999999999999875
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0025 Score=56.31 Aligned_cols=66 Identities=15% Similarity=0.158 Sum_probs=51.3
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
.|++.. ++.|++++||+|++|+|....++.++.. .+++.+ +++.++||+|+..+....++.+.+.+
T Consensus 197 ~g~~~~-~l~e~l~~aDvVi~~vp~~~~t~~~i~~--~~~~~m--k~gailIn~srg~~v~~~aL~~aL~~ 262 (330)
T 2gcg_A 197 FQAEFV-STPELAAQSDFIVVACSLTPATEGLCNK--DFFQKM--KETAVFINISRGDVVNQDDLYQALAS 262 (330)
T ss_dssp TTCEEC-CHHHHHHHCSEEEECCCCCTTTTTCBSH--HHHHHS--CTTCEEEECSCGGGBCHHHHHHHHHH
T ss_pred cCceeC-CHHHHHhhCCEEEEeCCCChHHHHhhCH--HHHhcC--CCCcEEEECCCCcccCHHHHHHHHHc
Confidence 355555 8899999999999999998776666531 244443 45689999999999888899998875
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.003 Score=55.89 Aligned_cols=65 Identities=22% Similarity=0.233 Sum_probs=52.8
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
|++. .++.|++++||+|++|+|..++.+.++.. ..++.+ +++.++||+++..+-....+.+.+.+
T Consensus 188 g~~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~--~~l~~m--k~gailIN~arg~~vd~~aL~~aL~~ 252 (330)
T 4e5n_A 188 GLRQ-VACSELFASSDFILLALPLNADTLHLVNA--ELLALV--RPGALLVNPCRGSVVDEAAVLAALER 252 (330)
T ss_dssp TEEE-CCHHHHHHHCSEEEECCCCSTTTTTCBCH--HHHTTS--CTTEEEEECSCGGGBCHHHHHHHHHH
T ss_pred Ccee-CCHHHHHhhCCEEEEcCCCCHHHHHHhCH--HHHhhC--CCCcEEEECCCCchhCHHHHHHHHHh
Confidence 5543 38999999999999999988777766632 355554 56789999999999999999999976
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0029 Score=56.28 Aligned_cols=61 Identities=13% Similarity=0.095 Sum_probs=51.0
Q ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 11 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 11 ~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
.++.|++++||+|++|+|..++.+.++.. ..++.+ ++|.++||+|+..+-..+.+.+.+.+
T Consensus 192 ~~l~ell~~aDvV~l~~Plt~~t~~li~~--~~l~~m--k~gailIN~aRg~~vd~~aL~~aL~~ 252 (343)
T 2yq5_A 192 TDFDTVLKEADIVSLHTPLFPSTENMIGE--KQLKEM--KKSAYLINCARGELVDTGALIKALQD 252 (343)
T ss_dssp CCHHHHHHHCSEEEECCCCCTTTTTCBCH--HHHHHS--CTTCEEEECSCGGGBCHHHHHHHHHH
T ss_pred cCHHHHHhcCCEEEEcCCCCHHHHHHhhH--HHHhhC--CCCcEEEECCCChhhhHHHHHHHHHc
Confidence 38999999999999999988887776642 355554 46789999999999999999999976
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0023 Score=56.02 Aligned_cols=67 Identities=16% Similarity=0.130 Sum_probs=52.0
Q ss_pred cCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 4 DMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 4 ~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
+.|++. .++.|++++||+|++|+|..++.+.++.. ..++.+ +++.++||+|+..+-....+.+.+.+
T Consensus 182 ~~g~~~-~~l~ell~~aDvV~l~~p~~~~t~~li~~--~~l~~m--k~ga~lin~arg~~vd~~aL~~aL~~ 248 (307)
T 1wwk_A 182 EVNGKF-VDLETLLKESDVVTIHVPLVESTYHLINE--ERLKLM--KKTAILINTSRGPVVDTNALVKALKE 248 (307)
T ss_dssp HTTCEE-CCHHHHHHHCSEEEECCCCSTTTTTCBCH--HHHHHS--CTTCEEEECSCGGGBCHHHHHHHHHH
T ss_pred hcCccc-cCHHHHHhhCCEEEEecCCChHHhhhcCH--HHHhcC--CCCeEEEECCCCcccCHHHHHHHHHh
Confidence 346654 48899999999999999998877766531 344444 45789999999999888889998876
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0053 Score=55.30 Aligned_cols=64 Identities=16% Similarity=0.122 Sum_probs=52.6
Q ss_pred CCCCCHHHHHhcCCEEEEeCCChHH----HHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 8 PTKETPFEVAEASDVVITMLPSSSH----VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 8 ~~~~s~~e~~~~advvi~~v~~~~a----v~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
....++.|++++||+|++++|..++ ++.++. ...++.+ ++|.++||+|+..+-..+.+.+.+.+
T Consensus 159 ~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~--~~~l~~m--k~gailIN~aRG~vvde~aL~~aL~~ 226 (381)
T 3oet_A 159 GDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLAD--ETLIRRL--KPGAILINACRGPVVDNAALLARLNA 226 (381)
T ss_dssp SCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBC--HHHHHHS--CTTEEEEECSCGGGBCHHHHHHHHHT
T ss_pred cccCCHHHHHhhCCEEEEcCcCCccccccchhhcC--HHHHhcC--CCCcEEEECCCCcccCHHHHHHHHHh
Confidence 4567999999999999999998877 666653 2355554 56799999999999999999999976
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0045 Score=54.78 Aligned_cols=65 Identities=8% Similarity=0.063 Sum_probs=52.2
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
+...+++.|++++||+|++|+|..++.+.++.. ..++.+ +++.++||+|+..+-..+.+.+.+.+
T Consensus 187 ~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~--~~l~~m--k~ga~lIn~arg~~vd~~aL~~aL~~ 251 (333)
T 1j4a_A 187 GYYVDSLDDLYKQADVISLHVPDVPANVHMIND--ESIAKM--KQDVVIVNVSRGPLVDTDAVIRGLDS 251 (333)
T ss_dssp TCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSH--HHHHHS--CTTEEEEECSCGGGBCHHHHHHHHHH
T ss_pred CeecCCHHHHHhhCCEEEEcCCCcHHHHHHHhH--HHHhhC--CCCcEEEECCCCcccCHHHHHHHHHh
Confidence 445568999999999999999998877766532 244443 46789999999999999999999976
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=95.30 E-value=0.14 Score=47.41 Aligned_cols=108 Identities=10% Similarity=0.123 Sum_probs=77.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhhcC-CcccccccCCCCCCcccCCCCCCC--CC
Q 024066 140 NGAAAKICNNLTMAVSMLGVSEALTLGQS------LGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVPASRN--YG 210 (273)
Q Consensus 140 ~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~------~Gl~~~~~~~~l~~~~-~~s~~~~~~~~~~~~~~~~~~~~~--~~ 210 (273)
....+|.+.|.+..+.+..++|.+.+.++ .+++...+..+++.+. -+|++++...+ .+.+...-.+ ++
T Consensus 317 ~~~~~~~~~~al~~~~i~~yaqGf~ll~~as~~~~w~l~~~~ia~iwr~GciIrs~~l~~i~~---a~~~~~~l~~ll~~ 393 (484)
T 4gwg_A 317 KKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKD---AFDRNPELQNLLLD 393 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTSTTCTTCBHHHHHHHH---HHHHCTTCSCGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHccCceeHHHHHHHHHH---HHHhCCCchhhhcC
Confidence 47789999999999999999999987665 4599999999998875 57776543210 0000000001 12
Q ss_pred CCcc--hhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 024066 211 GGFA--SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLC 250 (273)
Q Consensus 211 ~~f~--~~~~~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~ 250 (273)
|.|. +.......|.++..+-+.|+|+|.+.+++..|+.-.
T Consensus 394 ~~f~~~~~~~~~~~r~vv~~a~~~gip~P~~s~al~y~~~~r 435 (484)
T 4gwg_A 394 DFFKSAVENCQDSWRRAVSTGVQAGIPMPCFTTALSFYDGYR 435 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 2232 444456778899999999999999999999998773
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=95.28 E-value=0.0052 Score=54.41 Aligned_cols=61 Identities=10% Similarity=0.113 Sum_probs=50.7
Q ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 11 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 11 ~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
.++.|++++||+|++|+|..++.+.++.. ..++.+ ++|.++||+|+..+-..+.+.+.+.+
T Consensus 189 ~~l~ell~~aDvV~~~~P~~~~t~~li~~--~~l~~m--k~ga~lIn~srg~~vd~~aL~~aL~~ 249 (333)
T 1dxy_A 189 VSLEDLFKQSDVIDLHVPGIEQNTHIINE--AAFNLM--KPGAIVINTARPNLIDTQAMLSNLKS 249 (333)
T ss_dssp CCHHHHHHHCSEEEECCCCCGGGTTSBCH--HHHHHS--CTTEEEEECSCTTSBCHHHHHHHHHT
T ss_pred CCHHHHHhcCCEEEEcCCCchhHHHHhCH--HHHhhC--CCCcEEEECCCCcccCHHHHHHHHHh
Confidence 48899999999999999999887776532 355554 46789999999999999999999876
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.98 Score=38.80 Aligned_cols=150 Identities=18% Similarity=0.196 Sum_probs=93.9
Q ss_pred ccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhcc
Q 024066 3 SDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 82 (273)
Q Consensus 3 ~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~ 82 (273)
.++|.++.++-.|+++++|++|+.+|-.....+++. -+++++ +.|.+|-++-|++|-.--++-+.+.. .
T Consensus 125 EdaGVkVtsDD~EAvk~AEi~IlftPfG~~t~~Iak---kii~~l--pEgAII~nTCTipp~~ly~~le~l~R------~ 193 (358)
T 2b0j_A 125 EDVGLKVTSDDREAVEGADIVITWLPKGNKQPDIIK---KFADAI--PEGAIVTHACTIPTTKFAKIFKDLGR------E 193 (358)
T ss_dssp GGGTCEEESCHHHHHTTCSEEEECCTTCTTHHHHHH---HHGGGS--CTTCEEEECSSSCHHHHHHHHHHTTC------T
T ss_pred HHcCcEeecchHHHhcCCCEEEEecCCCCCcHHHHH---HHHhhC--cCCCEEecccCCCHHHHHHHHHHhCc------c
Confidence 568999999999999999999999998875555654 366664 67899999999999877776665431 1
Q ss_pred CCCCCceEEE---ecCCCCHHHHhcCceEEEee-cCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHH
Q 024066 83 DSWENPVMLD---APVSGGVLAAEAGTLTFMVG-GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLG 158 (273)
Q Consensus 83 g~~~g~~~ld---apv~G~~~~a~~g~l~~~vg-G~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~~~~~~ 158 (273)
++.... +.|-|. +|+..+=-+ .+++..+++-.+-+..++..|.+-.-=.+....|. .++.+..+++
T Consensus 194 ----DvgIsS~HPaaVPgt-----~Gq~~~g~~yAtEEqIeklveLaksa~k~ay~vPAdl~SpV~DMg-s~vTAv~~AG 263 (358)
T 2b0j_A 194 ----DLNITSYHPGCVPEM-----KGQVYIAEGYASEEAVNKLYEIGKIARGKAFKMPANLIGPVCDMC-SAVTATVYAG 263 (358)
T ss_dssp ----TSEEEECBCSSCTTT-----CCCEEEEESSSCHHHHHHHHHHHHHHHSCEEEEEHHHHHHHHSTT-HHHHHHHHHH
T ss_pred ----cCCeeccCCCCCCCC-----CCccccccccCCHHHHHHHHHHHHHhCCCeEecchhhccchhhhH-HHHHHHHHHH
Confidence 132222 334444 456322222 26788899999999999876654211111222221 2334444555
Q ss_pred HHHHHHHH-HHcCCCH
Q 024066 159 VSEALTLG-QSLGISA 173 (273)
Q Consensus 159 ~~Ea~~la-~~~Gl~~ 173 (273)
+.+-.... +-.|.+.
T Consensus 264 iL~Y~~~vtkIlgAP~ 279 (358)
T 2b0j_A 264 LLAYRDAVTKILGAPA 279 (358)
T ss_dssp HHHHHHHHHTTSCCCH
T ss_pred HHHHHHHHHHHhcCcH
Confidence 55555444 2334443
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=95.11 E-value=0.092 Score=48.66 Aligned_cols=159 Identities=14% Similarity=0.120 Sum_probs=86.1
Q ss_pred cCCCCCC----CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhh
Q 024066 4 DMGVPTK----ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILK 79 (273)
Q Consensus 4 ~~Ga~~~----~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~ 79 (273)
+.|+..+ .|+.|++++||+||+++|+... .+|+. .+.+.+ ++|++|+.+.-.+....++....+.
T Consensus 102 e~G~~v~d~ta~s~aEAa~~ADVVILaVP~~~~-~eVl~---eI~p~L--K~GaILs~AaGf~I~~le~~~i~~p----- 170 (525)
T 3fr7_A 102 AAGFTEESGTLGDIWETVSGSDLVLLLISDAAQ-ADNYE---KIFSHM--KPNSILGLSHGFLLGHLQSAGLDFP----- 170 (525)
T ss_dssp HTTCCTTTTCEEEHHHHHHHCSEEEECSCHHHH-HHHHH---HHHHHS--CTTCEEEESSSHHHHHHHHTTCCCC-----
T ss_pred HCCCEEecCCCCCHHHHHhcCCEEEECCChHHH-HHHHH---HHHHhc--CCCCeEEEeCCCCHHHHhhhcccCC-----
Confidence 4577763 6899999999999999999766 45775 376664 4567766555443332221000111
Q ss_pred hccCCCCCce-EEEecCCCCHH-------H---HhcCce-EEEeecCH--HHHHHHHHHHHHhcCCeEEeCCcChHHHHH
Q 024066 80 EKKDSWENPV-MLDAPVSGGVL-------A---AEAGTL-TFMVGGSE--DAYQAAKPLFLSMGKNTIYCGGAGNGAAAK 145 (273)
Q Consensus 80 ~~~g~~~g~~-~ldapv~G~~~-------~---a~~g~l-~~~vgG~~--~~~~~~~~~l~~~~~~i~~~G~~g~a~~~K 145 (273)
.++. +.-+|-.-+.. + ...|-. .+-+..+. +.++.+..++..+|...+.-...-.=...+
T Consensus 171 ------~dv~VVrVmPNtPg~~VR~~y~~G~~~~g~Gv~~liAv~qd~tgea~e~alala~aiG~~~vieTtf~eE~e~D 244 (525)
T 3fr7_A 171 ------KNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSD 244 (525)
T ss_dssp ------TTSEEEEEEESSCHHHHHHHHHHHTTSTTCSCCEEEEEEECSSSCHHHHHHHHHHHTTCSEEEECCHHHHHHHH
T ss_pred ------CCCcEEEEecCCCchhHHHHHhcccccccCCccEEEEcCCCCCHHHHHHHHHHHHHCCCCeeeeeeeeeehhHh
Confidence 1233 34466444432 1 014443 33344443 678999999999998532112222222223
Q ss_pred HHH--HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 024066 146 ICN--NLTMAVSMLGVSEALTLGQSLGISASTLTKI 179 (273)
Q Consensus 146 l~~--n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~ 179 (273)
|.. -.+..+..+.+--++..+.+.|++++.-+..
T Consensus 245 LfgeqtvLsG~~pAlieA~~d~lVe~G~~pe~Ay~~ 280 (525)
T 3fr7_A 245 IFGERGILLGAVHGIVEALFRRYTEQGMDEEMAYKN 280 (525)
T ss_dssp HHHHHTTTTHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred hhhhHhhhcCcHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 331 1122232333323345667789999865443
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=95.03 E-value=0.0065 Score=53.33 Aligned_cols=61 Identities=16% Similarity=0.226 Sum_probs=50.8
Q ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 11 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 11 ~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
+++.|++++||+|++|+|..++.+.++.. ..++.+ +++.++||+|+..+-..+.+.+.+.+
T Consensus 185 ~~l~ell~~aDiV~l~~Plt~~t~~li~~--~~l~~m--k~gailIN~aRG~~vd~~aL~~aL~~ 245 (315)
T 3pp8_A 185 EELRAFLNQTRVLINLLPNTAQTVGIINS--ELLDQL--PDGAYVLNLARGVHVQEADLLAALDS 245 (315)
T ss_dssp HHHHHHHHTCSEEEECCCCCGGGTTCBSH--HHHTTS--CTTEEEEECSCGGGBCHHHHHHHHHH
T ss_pred CCHHHHHhhCCEEEEecCCchhhhhhccH--HHHhhC--CCCCEEEECCCChhhhHHHHHHHHHh
Confidence 47889999999999999988887776632 355554 56799999999999999999999976
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.005 Score=54.52 Aligned_cols=65 Identities=14% Similarity=0.156 Sum_probs=50.7
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
|++. .++.+++++||+|++|+|....++.++.. .+++.+ +++.++||+|+..+-....+.+.+.+
T Consensus 192 g~~~-~~l~~~l~~aDvVil~vp~~~~t~~~i~~--~~~~~m--k~~ailIn~srg~~v~~~aL~~aL~~ 256 (334)
T 2dbq_A 192 NAEF-KPLEDLLRESDFVVLAVPLTRETYHLINE--ERLKLM--KKTAILINIARGKVVDTNALVKALKE 256 (334)
T ss_dssp CCEE-CCHHHHHHHCSEEEECCCCCTTTTTCBCH--HHHHHS--CTTCEEEECSCGGGBCHHHHHHHHHH
T ss_pred Cccc-CCHHHHHhhCCEEEECCCCChHHHHhhCH--HHHhcC--CCCcEEEECCCCcccCHHHHHHHHHh
Confidence 5543 58889999999999999998877666531 244443 45689999999999998899998875
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.0071 Score=52.98 Aligned_cols=61 Identities=16% Similarity=0.119 Sum_probs=49.1
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHh
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVS 74 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~ 74 (273)
..++.|++++||+|++|+|..++.+.++.. ..++.+ +++.++||+|+..+-..+.+.+.+.
T Consensus 184 ~~~l~ell~~aDvV~l~~p~~~~t~~li~~--~~l~~m--k~ga~lin~srg~~vd~~aL~~aL~ 244 (311)
T 2cuk_A 184 FLSLEELLKEADVVSLHTPLTPETHRLLNR--ERLFAM--KRGAILLNTARGALVDTEALVEALR 244 (311)
T ss_dssp BCCHHHHHHHCSEEEECCCCCTTTTTCBCH--HHHTTS--CTTCEEEECSCGGGBCHHHHHHHHT
T ss_pred cCCHHHHHhhCCEEEEeCCCChHHHhhcCH--HHHhhC--CCCcEEEECCCCCccCHHHHHHHHh
Confidence 468899999999999999998877776631 344443 4678999999999988888888886
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.006 Score=53.94 Aligned_cols=61 Identities=18% Similarity=0.147 Sum_probs=50.1
Q ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 11 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 11 ~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
.++.|++++||+|++|+|..++.+.++. ...++.+ ++|.++||+|+..+-..+.+.+.+.+
T Consensus 190 ~~l~ell~~aDvV~~~~p~t~~t~~li~--~~~l~~m--k~ga~lin~srg~~vd~~aL~~aL~~ 250 (331)
T 1xdw_A 190 VSLDEVLEKSDIITIHAPYIKENGAVVT--RDFLKKM--KDGAILVNCARGQLVDTEAVIEAVES 250 (331)
T ss_dssp CCHHHHHHHCSEEEECCCCCTTTCCSBC--HHHHHTS--CTTEEEEECSCGGGBCHHHHHHHHHH
T ss_pred CCHHHHHhhCCEEEEecCCchHHHHHhC--HHHHhhC--CCCcEEEECCCcccccHHHHHHHHHh
Confidence 4889999999999999999877766653 1345554 46789999999999999999999976
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.0062 Score=54.85 Aligned_cols=62 Identities=10% Similarity=0.045 Sum_probs=50.8
Q ss_pred CCCHHHHHhcCCEEEEeCCChHH----HHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 10 KETPFEVAEASDVVITMLPSSSH----VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~a----v~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
..++.|++++||+|++|+|..++ .+.++. ...++.+ ++|.++||+|+..+-..+.+.+.+.+
T Consensus 158 ~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~--~~~l~~m--k~gailIN~sRG~vvd~~aL~~aL~~ 223 (380)
T 2o4c_A 158 FVSLERLLAEADVISLHTPLNRDGEHPTRHLLD--EPRLAAL--RPGTWLVNASRGAVVDNQALRRLLEG 223 (380)
T ss_dssp CCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBC--HHHHHTS--CTTEEEEECSCGGGBCHHHHHHHHHT
T ss_pred cCCHHHHHHhCCEEEEeccCccccccchhhhcC--HHHHhhC--CCCcEEEECCCCcccCHHHHHHHHHh
Confidence 46899999999999999998877 666653 2355554 56789999999999999999999875
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.2 Score=45.17 Aligned_cols=212 Identities=14% Similarity=0.077 Sum_probs=104.8
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCC-H--HHHHHHHHHHhhchhhhccC
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID-P--QTSRNISAAVSNCILKEKKD 83 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~-P--~~~~~l~~~~~~~g~~~~~g 83 (273)
.+..+++.+++++||+||+++|. +.+++++.. +.+.. +++.++|.++-.- + ...+.+.+.+.+. - +
T Consensus 105 i~~t~dl~~al~~ad~ii~avPs-~~~r~~l~~---l~~~~--~~~~~iv~~~KGie~~~~~~~~~se~i~e~----~-~ 173 (391)
T 4fgw_A 105 LVANPDLIDSVKDVDIIVFNIPH-QFLPRICSQ---LKGHV--DSHVRAISCLKGFEVGAKGVQLLSSYITEE----L-G 173 (391)
T ss_dssp EEEESCHHHHHTTCSEEEECSCG-GGHHHHHHH---HTTTS--CTTCEEEECCCSCEEETTEEECHHHHHHHH----H-C
T ss_pred cEEeCCHHHHHhcCCEEEEECCh-hhhHHHHHH---hcccc--CCCceeEEeccccccccccchhHHHHHHHH----h-C
Confidence 45567889999999999999997 477888764 32222 2345666655321 1 1012233333321 0 1
Q ss_pred CCCCceEEEecCCCCHHHHhcCce-EEEeecC-HH---------HHHHHHHHHHHhcCCeEEeCC-cC--hHHHHH----
Q 024066 84 SWENPVMLDAPVSGGVLAAEAGTL-TFMVGGS-ED---------AYQAAKPLFLSMGKNTIYCGG-AG--NGAAAK---- 145 (273)
Q Consensus 84 ~~~g~~~ldapv~G~~~~a~~g~l-~~~vgG~-~~---------~~~~~~~~l~~~~~~i~~~G~-~g--~a~~~K---- 145 (273)
..+.++-.|-+-.. ...+.. .+.++++ .. .-+.++.+|..=--+++.--+ .| -|-++|
T Consensus 174 --~~~~vLsGPs~A~E--Va~~~pta~~iA~~~~~~~~~~~~~~~a~~~~~lf~~~~frvy~s~DviGvElgGAlKNViA 249 (391)
T 4fgw_A 174 --IQCGALSGANIATE--VAQEHWSETTVAYHIPKDFRGEGKDVDHKVLKALFHRPYFHVSVIEDVAGISICGALKNVVA 249 (391)
T ss_dssp --CEEEEEECSCCHHH--HHTTCCEEEEEECCCCTTCCCSSSSCCHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHH
T ss_pred --ccceeccCCchHHH--hhcCCCceEEEEecChhhhhhhhHHHHHHHHHHHhCCCCEEEEEeCCccceehHHHHHHHHH
Confidence 01223333332221 222322 3444432 22 123344443321112222223 22 344444
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHc---CCCHHHH------HHHHhhcC-CcccccccCCCCCCcccCCCC
Q 024066 146 ----------ICNNLTMAVSMLGVSEALTLGQSL---GISASTL------TKILNSSS-ARCWSSDSYNPVPGVMEGVPA 205 (273)
Q Consensus 146 ----------l~~n~~~~~~~~~~~Ea~~la~~~---Gl~~~~~------~~~l~~~~-~~s~~~~~~~~~~~~~~~~~~ 205 (273)
+=.|.-.+...-+++|+..|+.++ |-++..+ -|++-+.. .+++.+. ..+ .
T Consensus 250 IAaGi~dGlg~G~NakAALitrGl~Em~rlg~al~~~g~~~tt~~glaGlGDLi~Tc~sSRNr~~G------~~l----g 319 (391)
T 4fgw_A 250 LGCGFVEGLGWGNNASAAIQRVGLGEIIRFGQMFFPESREETYYQESAGVADLITTCAGGRNVKVA------RLM----A 319 (391)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHSTTTHHHHHHHHHSSHHHHHH------HHH----H
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHhcccCCceeecCCCcccceeEEecCCccHHHH------HHH----H
Confidence 334766667777899999999997 4444332 23333321 1111110 000 0
Q ss_pred CCCCCCCcchhh------------HHHHHHHHHHHHHHhCC--CChHHHHHHHHHH
Q 024066 206 SRNYGGGFASKL------------MAKDLNLALASAKEVGV--DCPLTSQAQDIYA 247 (273)
Q Consensus 206 ~~~~~~~f~~~~------------~~KD~~~~~~~a~~~g~--~~~~~~~~~~~~~ 247 (273)
.+ +.+++. -.+-.+.+.+++++.|+ ++|+++++.+++.
T Consensus 320 ~~----G~~~~~~~~~~~~g~v~EGv~ta~~v~~l~~~~~v~~emPI~~~vy~IL~ 371 (391)
T 4fgw_A 320 TS----GKDAWECEKELLNGQSAQGLITCKEVHEWLETCGSVEDFPLFEAVYQIVY 371 (391)
T ss_dssp HT----CCCHHHHHHHHHTTCCCTHHHHHHHHHHHHHHHTCSTTCHHHHHHHHHHH
T ss_pred hc----CCCHHHHHHHHhCCCEEehHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHh
Confidence 00 111111 23345667788999999 8999999988764
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=0.0026 Score=56.73 Aligned_cols=69 Identities=13% Similarity=0.133 Sum_probs=50.9
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCC
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWE 86 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~ 86 (273)
+..++++.|+++++|+||+|+|++. ...++.. ..+ .+|+.|++++|..|+ ++++...+..+
T Consensus 182 ~~~~~~~~eav~~aDiVi~aTps~~-~~pvl~~--~~l-----~~G~~V~~vgs~~p~-~~El~~~~~~~---------- 242 (350)
T 1x7d_A 182 IRRASSVAEAVKGVDIITTVTADKA-YATIITP--DML-----EPGMHLNAVGGDCPG-KTELHADVLRN---------- 242 (350)
T ss_dssp EEECSSHHHHHTTCSEEEECCCCSS-EEEEECG--GGC-----CTTCEEEECSCCBTT-BEEECHHHHHT----------
T ss_pred EEEeCCHHHHHhcCCEEEEeccCCC-CCceecH--HHc-----CCCCEEEECCCCCCC-ceeeCHHHHhc----------
Confidence 4567899999999999999999873 2334432 122 357899999999999 78888776543
Q ss_pred CceEEEec
Q 024066 87 NPVMLDAP 94 (273)
Q Consensus 87 g~~~ldap 94 (273)
+..|+|..
T Consensus 243 a~v~vD~~ 250 (350)
T 1x7d_A 243 ARVFVEYE 250 (350)
T ss_dssp SEEEESSH
T ss_pred CcEEECCH
Confidence 25799973
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=94.14 E-value=0.0082 Score=53.08 Aligned_cols=64 Identities=17% Similarity=0.166 Sum_probs=49.9
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
|+... ++.+++++||+|++|+|...+.+.++.. .+++.+ +++ ++||+|+..+-...++.+.+.+
T Consensus 188 g~~~~-~l~e~l~~aDiVil~vp~~~~t~~~i~~--~~~~~m--k~g-ilin~srg~~vd~~aL~~aL~~ 251 (333)
T 2d0i_A 188 KARYM-DIDELLEKSDIVILALPLTRDTYHIINE--ERVKKL--EGK-YLVNIGRGALVDEKAVTEAIKQ 251 (333)
T ss_dssp TEEEC-CHHHHHHHCSEEEECCCCCTTTTTSBCH--HHHHHT--BTC-EEEECSCGGGBCHHHHHHHHHT
T ss_pred Cceec-CHHHHHhhCCEEEEcCCCChHHHHHhCH--HHHhhC--CCC-EEEECCCCcccCHHHHHHHHHc
Confidence 44443 7889999999999999999777766642 234443 467 9999999999988889988875
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=93.89 E-value=0.25 Score=43.30 Aligned_cols=147 Identities=15% Similarity=0.085 Sum_probs=94.0
Q ss_pred CCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEE--EcCCCCHHHHHHHHHHHhhchhhhccCCC
Q 024066 8 PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLI--DSSTIDPQTSRNISAAVSNCILKEKKDSW 85 (273)
Q Consensus 8 ~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iii--d~ST~~P~~~~~l~~~~~~~g~~~~~g~~ 85 (273)
+.+++..|++++||+||=|+|..-+++.-++.. +-+. .+++ .|+ |+|+.++. ++++.+.. .
T Consensus 76 ~~~~~l~~a~~~ad~ViEav~E~l~iK~~lf~~--l~~~--~~~~-aIlaSNTSsl~is---~ia~~~~~------p--- 138 (319)
T 3ado_A 76 SSCTNLAEAVEGVVHIQECVPENLDLKRKIFAQ--LDSI--VDDR-VVLSSSSSCLLPS---KLFTGLAH------V--- 138 (319)
T ss_dssp EEECCHHHHTTTEEEEEECCCSCHHHHHHHHHH--HHTT--CCSS-SEEEECCSSCCHH---HHHTTCTT------G---
T ss_pred ccccchHhHhccCcEEeeccccHHHHHHHHHHH--HHHH--hhhc-ceeehhhhhccch---hhhhhccC------C---
Confidence 346788899999999999999999887544431 2222 1333 445 55555554 44444321 1
Q ss_pred CCceEEEecCCCCHHHHhcCceEEEeec---CHHHHHHHHHHHHHhcCCeEEe-CC-cChHHHHHHHHHHHHHHHHHHHH
Q 024066 86 ENPVMLDAPVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYC-GG-AGNGAAAKICNNLTMAVSMLGVS 160 (273)
Q Consensus 86 ~g~~~ldapv~G~~~~a~~g~l~~~vgG---~~~~~~~~~~~l~~~~~~i~~~-G~-~g~a~~~Kl~~n~~~~~~~~~~~ 160 (273)
-+++-.=-+-.++- =.|+=++.| ++++++++..+++.+++..+.+ .+ +| .+.|-+. ...+.
T Consensus 139 --~r~ig~HffNP~~~---m~LVEiv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~kd~pG------Fi~NRl~---~~~~~ 204 (319)
T 3ado_A 139 --KQCIVAHPVNPPYY---IPLVELVPHPETSPATVDRTHALMRKIGQSPVRVLKEIDG------FVLNRLQ---YAIIS 204 (319)
T ss_dssp --GGEEEEEECSSTTT---CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEECSSCCTT------TTHHHHH---HHHHH
T ss_pred --CcEEEecCCCCccc---cchHHhcCCCCCcHHHHHHHHHHHHHhCCccCCcCCCCCC------EeHHHHH---HHHHH
Confidence 12332222222221 145555665 4689999999999999876544 56 66 2445443 46789
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhcCC
Q 024066 161 EALTLGQSLGISASTLTKILNSSSA 185 (273)
Q Consensus 161 Ea~~la~~~Gl~~~~~~~~l~~~~~ 185 (273)
|++.+.+.-+.+++++=.++..+.+
T Consensus 205 EA~~lv~eGvas~edID~~~~~g~g 229 (319)
T 3ado_A 205 EAWRLVEEGIVSPSDLDLVMSDGLG 229 (319)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHTTHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 9999999999999998777776554
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=92.52 E-value=0.024 Score=49.12 Aligned_cols=88 Identities=19% Similarity=0.189 Sum_probs=56.3
Q ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceE
Q 024066 11 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVM 90 (273)
Q Consensus 11 ~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~~ 90 (273)
.+..+++++||+|++++|..---++ .++.+ +++.++||++.....+. + +....+ |+.+
T Consensus 207 ~~l~~~l~~aDvVi~~~p~~~i~~~-------~~~~m--k~g~~lin~a~g~~~~~--~-~~a~~~----------G~~~ 264 (300)
T 2rir_A 207 DELKEHVKDIDICINTIPSMILNQT-------VLSSM--TPKTLILDLASRPGGTD--F-KYAEKQ----------GIKA 264 (300)
T ss_dssp GGHHHHSTTCSEEEECCSSCCBCHH-------HHTTS--CTTCEEEECSSTTCSBC--H-HHHHHH----------TCEE
T ss_pred hhHHHHhhCCCEEEECCChhhhCHH-------HHHhC--CCCCEEEEEeCCCCCcC--H-HHHHHC----------CCEE
Confidence 5788899999999999997311111 22333 45679999998644332 2 233322 3789
Q ss_pred EEec-CCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhc
Q 024066 91 LDAP-VSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMG 129 (273)
Q Consensus 91 ldap-v~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~ 129 (273)
+++| +.|...++..+.+. ++.+.|++..+.
T Consensus 265 i~~pg~~g~v~~a~a~~l~---------~~~~~~~l~~~~ 295 (300)
T 2rir_A 265 LLAPGLPGIVAPKTAGQIL---------ANVLSKLLAEIQ 295 (300)
T ss_dssp EECCCHHHHHCHHHHHHHH---------HHHHHHHHHHHH
T ss_pred EECCCCCCcHHHHHHHHHH---------HHHHHHHHHHhc
Confidence 9999 87777666665542 456666666554
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=92.48 E-value=0.38 Score=41.35 Aligned_cols=63 Identities=10% Similarity=0.063 Sum_probs=49.2
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEE-cCCCCHHHHHHHHHHHhhc
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLID-SSTIDPQTSRNISAAVSNC 76 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid-~ST~~P~~~~~l~~~~~~~ 76 (273)
|+...+|..|+++++|+|++|+|+....+-+.. +++. +..++++ -.+.++++++++.+.++++
T Consensus 53 ~~~~~~~~~~ll~~~D~V~i~tp~~~h~~~~~~----al~~----gk~vl~EKP~~~~~~~~~~l~~~a~~~ 116 (308)
T 3uuw_A 53 RIMPFDSIESLAKKCDCIFLHSSTETHYEIIKI----LLNL----GVHVYVDKPLASTVSQGEELIELSTKK 116 (308)
T ss_dssp TCCBCSCHHHHHTTCSEEEECCCGGGHHHHHHH----HHHT----TCEEEECSSSSSSHHHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHhcCCEEEEeCCcHhHHHHHHH----HHHC----CCcEEEcCCCCCCHHHHHHHHHHHHHc
Confidence 666688999999999999999999987665542 3332 3357777 6788999999999988763
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=92.10 E-value=0.33 Score=42.47 Aligned_cols=64 Identities=19% Similarity=0.217 Sum_probs=50.1
Q ss_pred CCCCCCCCHHHHHh--cCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhc
Q 024066 5 MGVPTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNC 76 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~--~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~S-T~~P~~~~~l~~~~~~~ 76 (273)
.|++..+|+.|+++ ++|+|++|+|+....+-+.. +++. +..++++-. +.++++++++.+.++++
T Consensus 49 ~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~----al~~----gk~v~~EKP~~~~~~~~~~l~~~a~~~ 115 (344)
T 3euw_A 49 NGAEAVASPDEVFARDDIDGIVIGSPTSTHVDLITR----AVER----GIPALCEKPIDLDIEMVRACKEKIGDG 115 (344)
T ss_dssp TTCEEESSHHHHTTCSCCCEEEECSCGGGHHHHHHH----HHHT----TCCEEECSCSCSCHHHHHHHHHHHGGG
T ss_pred cCCceeCCHHHHhcCCCCCEEEEeCCchhhHHHHHH----HHHc----CCcEEEECCCCCCHHHHHHHHHHHHhc
Confidence 37778899999998 89999999999887765543 3332 335888876 88999999999988764
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=91.71 E-value=0.52 Score=41.03 Aligned_cols=63 Identities=11% Similarity=0.129 Sum_probs=48.9
Q ss_pred CC-CCCCCHHHHHh--cCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhc
Q 024066 6 GV-PTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNC 76 (273)
Q Consensus 6 Ga-~~~~s~~e~~~--~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~S-T~~P~~~~~l~~~~~~~ 76 (273)
|+ +..+|..|+++ ++|+|++|+|+....+.+.. +++. +..++++-. +.++++++++.+.+++.
T Consensus 51 ~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~----al~~----gk~vl~EKP~~~~~~e~~~l~~~a~~~ 117 (330)
T 3e9m_A 51 AIPVAYGSYEELCKDETIDIIYIPTYNQGHYSAAKL----ALSQ----GKPVLLEKPFTLNAAEAEELFAIAQEQ 117 (330)
T ss_dssp TCCCCBSSHHHHHHCTTCSEEEECCCGGGHHHHHHH----HHHT----TCCEEECSSCCSSHHHHHHHHHHHHHT
T ss_pred CCCceeCCHHHHhcCCCCCEEEEcCCCHHHHHHHHH----HHHC----CCeEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 55 57889999998 79999999999987765543 3332 335888876 88999999999988753
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=91.60 E-value=0.62 Score=40.88 Aligned_cols=63 Identities=11% Similarity=0.236 Sum_probs=49.0
Q ss_pred CCCCCCCHHHHH--hcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhc
Q 024066 6 GVPTKETPFEVA--EASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNC 76 (273)
Q Consensus 6 Ga~~~~s~~e~~--~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~S-T~~P~~~~~l~~~~~~~ 76 (273)
|+...+|+.|++ .+.|+|++|+|+....+.+.. +++. +..++++-. +.++++++++.+.++++
T Consensus 51 g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~----al~~----gk~vl~EKP~~~~~~~~~~l~~~a~~~ 116 (354)
T 3db2_A 51 NCAGDATMEALLAREDVEMVIITVPNDKHAEVIEQ----CARS----GKHIYVEKPISVSLDHAQRIDQVIKET 116 (354)
T ss_dssp TCCCCSSHHHHHHCSSCCEEEECSCTTSHHHHHHH----HHHT----TCEEEEESSSCSSHHHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHhcCCCCCEEEEeCChHHHHHHHHH----HHHc----CCEEEEccCCCCCHHHHHHHHHHHHHc
Confidence 777789999999 459999999999887765542 3332 336888876 88999999999988763
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=91.38 E-value=0.51 Score=41.01 Aligned_cols=63 Identities=16% Similarity=0.234 Sum_probs=48.5
Q ss_pred CCCCCCCCHHHHHh--cCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhc
Q 024066 5 MGVPTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNC 76 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~--~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~S-T~~P~~~~~l~~~~~~~ 76 (273)
.|+. .+|+.|+++ ++|+|++|+|+....+.+.. +++. +..++++-. +.++++++++.+.++++
T Consensus 48 ~~~~-~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~----al~~----gk~v~~EKP~~~~~~~~~~l~~~a~~~ 113 (331)
T 4hkt_A 48 YGCE-VRTIDAIEAAADIDAVVICTPTDTHADLIER----FARA----GKAIFCEKPIDLDAERVRACLKVVSDT 113 (331)
T ss_dssp TTCE-ECCHHHHHHCTTCCEEEECSCGGGHHHHHHH----HHHT----TCEEEECSCSCSSHHHHHHHHHHHHHT
T ss_pred hCCC-cCCHHHHhcCCCCCEEEEeCCchhHHHHHHH----HHHc----CCcEEEecCCCCCHHHHHHHHHHHHHc
Confidence 3666 889999998 79999999999887765543 3332 335777765 89999999999988763
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=91.37 E-value=3 Score=35.48 Aligned_cols=208 Identities=11% Similarity=0.088 Sum_probs=109.6
Q ss_pred CHHHHH-hcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCC-CHHHHHHHHHHHhhchhhhccCCCCCce
Q 024066 12 TPFEVA-EASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI-DPQTSRNISAAVSNCILKEKKDSWENPV 89 (273)
Q Consensus 12 s~~e~~-~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~-~P~~~~~l~~~~~~~g~~~~~g~~~g~~ 89 (273)
++.+.+ ..+|+||+|++.. ++++++.. +.+.. .++++||-+... ...+. +... + -..++.
T Consensus 54 ~~~~~~~~~~D~vilavk~~-~~~~~l~~---l~~~l--~~~~~iv~~~nGi~~~~~------~~~~----~--v~~g~~ 115 (294)
T 3g17_A 54 KGYEDVTNTFDVIIIAVKTH-QLDAVIPH---LTYLA--HEDTLIILAQNGYGQLEH------IPFK----N--VCQAVV 115 (294)
T ss_dssp EEGGGCCSCEEEEEECSCGG-GHHHHGGG---HHHHE--EEEEEEEECCSSCCCGGG------CCCS----C--EEECEE
T ss_pred CchHhcCCCCCEEEEeCCcc-CHHHHHHH---HHHhh--CCCCEEEEeccCcccHhh------CCCC----c--EEEEEE
Confidence 445554 7899999999986 66777653 33221 233455544433 33221 2110 0 000122
Q ss_pred EEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHH----------------
Q 024066 90 MLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA---------------- 153 (273)
Q Consensus 90 ~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~~g~a~~~Kl~~n~~~~---------------- 153 (273)
+..+-..| |..+..+...+.+ |+.+..+++..+|+.-+-++++..++-...--|++.|..+.
T Consensus 116 ~~~a~~~~-pg~v~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~inl~al~~~~~g~~l~~~ 193 (294)
T 3g17_A 116 YISGQKKG-DVVTHFRDYQLRI-QDNALTRQFRDLVQDSQIDIVLEANIQQAIWYKLLVNLGINSITALGRQTVAIMHNP 193 (294)
T ss_dssp EEEEEEET-TEEEEEEEEEEEE-ECSHHHHHHHHHTTTSSCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSH
T ss_pred EEEEEEcC-CCEEEECCCEEec-CccHHHHHHHHHHHhCCCceEEChHHHHHHHHHHHHHHHHHHHHHHCCChHHHHcCH
Confidence 32222222 2111122112223 45555667777777666666666668888999999887322
Q ss_pred ----HHHHHHHHHHHHHHHcCCC--HHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHH
Q 024066 154 ----VSMLGVSEALTLGQSLGIS--ASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALA 227 (273)
Q Consensus 154 ----~~~~~~~Ea~~la~~~Gl~--~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~ 227 (273)
....++.|+..++++.|++ .+.+.+.+....... ... .+.|+.. +..+.. .-++.. ...+++
T Consensus 194 ~~~~l~~~~~~E~~~va~a~G~~l~~~~~~~~~~~~~~~~--~~~---~sSM~qD-~~~gr~---tEid~i---~G~vv~ 261 (294)
T 3g17_A 194 EIRILCRQLLLDGCRVAQAEGLNFSEQTVDTIMTIYQGYP--DEM---GTSMYYD-IVHQQP---LEVEAI---QGFIYR 261 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSC--TTC---CCHHHHH-HHTTCC---CSGGGT---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC--CCC---CCcHHHH-HHcCCC---ccHHHh---hhHHHH
Confidence 1245778999999999976 333333333210000 000 0111110 011110 012221 567889
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHH
Q 024066 228 SAKEVGVDCPLTSQAQDIYAKLCE 251 (273)
Q Consensus 228 ~a~~~g~~~~~~~~~~~~~~~a~~ 251 (273)
.+++.|+++|..+...++.+...+
T Consensus 262 ~a~~~gv~~P~~~~l~~ll~~~e~ 285 (294)
T 3g17_A 262 RAREHNLDTPYLDTIYSFLRAYQQ 285 (294)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCChHHHHHHHHHHHHh
Confidence 999999999999999988876544
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=91.34 E-value=0.6 Score=40.25 Aligned_cols=62 Identities=16% Similarity=0.199 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHh--cCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEE-cCCCCHHHHHHHHHHHhhc
Q 024066 7 VPTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLID-SSTIDPQTSRNISAAVSNC 76 (273)
Q Consensus 7 a~~~~s~~e~~~--~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid-~ST~~P~~~~~l~~~~~~~ 76 (273)
+...+++.|+++ ++|+|++|+|+....+-+.. +++ .+..++++ -.+.++++++++.+.++++
T Consensus 55 ~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~----al~----~Gk~v~~eKP~~~~~~~~~~l~~~a~~~ 119 (315)
T 3c1a_A 55 CVIESDWRSVVSAPEVEAVIIATPPATHAEITLA----AIA----SGKAVLVEKPLTLDLAEAEAVAAAAKAT 119 (315)
T ss_dssp CEEESSTHHHHTCTTCCEEEEESCGGGHHHHHHH----HHH----TTCEEEEESSSCSCHHHHHHHHHHHHHH
T ss_pred CcccCCHHHHhhCCCCCEEEEeCChHHHHHHHHH----HHH----CCCcEEEcCCCcCCHHHHHHHHHHHHHc
Confidence 445678899886 79999999999877654442 332 13357888 5678999999999987653
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=91.19 E-value=0.89 Score=39.21 Aligned_cols=63 Identities=16% Similarity=0.203 Sum_probs=46.4
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 76 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~-ST~~P~~~~~l~~~~~~~ 76 (273)
|+...++..++..++|+|++|+|+....+.+.. +++ .+..++++- .+.++++++++.+.+++.
T Consensus 52 g~~~~~~~~~l~~~~D~V~i~tp~~~h~~~~~~----al~----~G~~v~~eKP~~~~~~~~~~l~~~a~~~ 115 (319)
T 1tlt_A 52 RIPYADSLSSLAASCDAVFVHSSTASHFDVVST----LLN----AGVHVCVDKPLAENLRDAERLVELAARK 115 (319)
T ss_dssp TCCBCSSHHHHHTTCSEEEECSCTTHHHHHHHH----HHH----TTCEEEEESSSCSSHHHHHHHHHHHHHT
T ss_pred CCCccCcHHHhhcCCCEEEEeCCchhHHHHHHH----HHH----cCCeEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 666778888776789999999999877655542 332 133578884 678899999999987653
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=90.81 E-value=0.11 Score=39.72 Aligned_cols=60 Identities=15% Similarity=0.222 Sum_probs=41.9
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
.|.++..|++|+.+..|++++|+|. +.+.+++.. +.+.. .+ .+|+..++.. +++.+.+++
T Consensus 56 ~G~~~~~sl~el~~~vDlavi~vp~-~~~~~v~~~---~~~~g--i~-~i~~~~g~~~----~~~~~~a~~ 115 (140)
T 1iuk_A 56 FGEEAVASLLDLKEPVDILDVFRPP-SALMDHLPE---VLALR--PG-LVWLQSGIRH----PEFEKALKE 115 (140)
T ss_dssp TTEECBSSGGGCCSCCSEEEECSCH-HHHTTTHHH---HHHHC--CS-CEEECTTCCC----HHHHHHHHH
T ss_pred CCEEecCCHHHCCCCCCEEEEEeCH-HHHHHHHHH---HHHcC--CC-EEEEcCCcCH----HHHHHHHHH
Confidence 3778889999998899999999998 566666643 32221 23 4788777763 566666655
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=90.58 E-value=0.83 Score=39.71 Aligned_cols=63 Identities=8% Similarity=0.105 Sum_probs=48.8
Q ss_pred CCCCCCCHHHHHh--cCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 024066 6 GVPTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 76 (273)
Q Consensus 6 Ga~~~~s~~e~~~--~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~-ST~~P~~~~~l~~~~~~~ 76 (273)
|++..+|..|+++ +.|+|++|+|+....+.+.. .++. +..++++- .+.++++++++.+.+++.
T Consensus 51 ~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~----al~a----GkhVl~EKP~a~~~~e~~~l~~~a~~~ 116 (336)
T 2p2s_A 51 SVPFAASAEQLITDASIDLIACAVIPCDRAELALR----TLDA----GKDFFTAKPPLTTLEQLDAVQRRVAET 116 (336)
T ss_dssp TCCBCSCHHHHHTCTTCCEEEECSCGGGHHHHHHH----HHHT----TCEEEECSSCCSCHHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHhhCCCCCEEEEeCChhhHHHHHHH----HHHC----CCcEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 5778899999987 59999999999887765553 3322 33588885 788999999999987653
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=90.47 E-value=0.77 Score=39.73 Aligned_cols=74 Identities=12% Similarity=0.134 Sum_probs=51.9
Q ss_pred CCC-CCCCHHHHHh--cCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhchhhhc
Q 024066 6 GVP-TKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEK 81 (273)
Q Consensus 6 Ga~-~~~s~~e~~~--~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~-ST~~P~~~~~l~~~~~~~g~~~~ 81 (273)
|+. ..+|..|+++ ++|+|++|+|+......+.. +++ .+..++++. .+.++++++++.+.+++.
T Consensus 46 g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~----al~----~Gk~v~~ekP~~~~~~~~~~l~~~a~~~----- 112 (332)
T 2glx_A 46 GIGKSVTSVEELVGDPDVDAVYVSTTNELHREQTLA----AIR----AGKHVLCEKPLAMTLEDAREMVVAAREA----- 112 (332)
T ss_dssp TCSCCBSCHHHHHTCTTCCEEEECSCGGGHHHHHHH----HHH----TTCEEEECSSSCSSHHHHHHHHHHHHHH-----
T ss_pred CCCcccCCHHHHhcCCCCCEEEEeCChhHhHHHHHH----HHH----CCCeEEEeCCCcCCHHHHHHHHHHHHHc-----
Confidence 553 6789999987 49999999998876554432 332 233577775 678999999999988753
Q ss_pred cCCCCCceEEEecCCC
Q 024066 82 KDSWENPVMLDAPVSG 97 (273)
Q Consensus 82 ~g~~~g~~~ldapv~G 97 (273)
|+.+..+....
T Consensus 113 -----g~~~~~~~~~r 123 (332)
T 2glx_A 113 -----GVVLGTNHHLR 123 (332)
T ss_dssp -----TCCEEECCCGG
T ss_pred -----CCEEEEeehhh
Confidence 25566665544
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=90.45 E-value=0.15 Score=39.16 Aligned_cols=60 Identities=12% Similarity=0.224 Sum_probs=40.7
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
.|..+..|+.|+.+..|++++|+|+ +.+.+++.. +.+.. . +.+|+..++. .+++.+.+++
T Consensus 63 ~G~~~y~sl~~l~~~vDlvvi~vp~-~~~~~vv~~---~~~~g--i-~~i~~~~g~~----~~~l~~~a~~ 122 (144)
T 2d59_A 63 LGRKCYPSVLDIPDKIEVVDLFVKP-KLTMEYVEQ---AIKKG--A-KVVWFQYNTY----NREASKKADE 122 (144)
T ss_dssp TTEECBSSGGGCSSCCSEEEECSCH-HHHHHHHHH---HHHHT--C-SEEEECTTCC----CHHHHHHHHH
T ss_pred CCeeccCCHHHcCCCCCEEEEEeCH-HHHHHHHHH---HHHcC--C-CEEEECCCch----HHHHHHHHHH
Confidence 3777888999998899999999998 466666643 33221 2 2566665554 4566666655
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=90.38 E-value=0.082 Score=46.34 Aligned_cols=63 Identities=14% Similarity=0.177 Sum_probs=44.9
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCce
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPV 89 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~ 89 (273)
++++.|++ ++|+|++|.|... .++.. +. ...|+.|+++++..|. .+++...+..+ +..
T Consensus 179 ~~~~~e~v-~aDvVi~aTp~~~---pv~~~-----~~--l~~G~~V~~ig~~~p~-~~el~~~~~~~----------a~v 236 (322)
T 1omo_A 179 VQPAEEAS-RCDVLVTTTPSRK---PVVKA-----EW--VEEGTHINAIGADGPG-KQELDVEILKK----------AKI 236 (322)
T ss_dssp ECCHHHHT-SSSEEEECCCCSS---CCBCG-----GG--CCTTCEEEECSCCSTT-CCCBCHHHHHT----------EEE
T ss_pred ECCHHHHh-CCCEEEEeeCCCC---ceecH-----HH--cCCCeEEEECCCCCCC-ccccCHHHHhc----------CeE
Confidence 78999999 9999999999863 23321 11 1356899999999998 67776655432 147
Q ss_pred EEEec
Q 024066 90 MLDAP 94 (273)
Q Consensus 90 ~ldap 94 (273)
|+|.+
T Consensus 237 ~vD~~ 241 (322)
T 1omo_A 237 VVDDL 241 (322)
T ss_dssp EESCH
T ss_pred EECCH
Confidence 88863
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=90.21 E-value=1.1 Score=38.59 Aligned_cols=206 Identities=10% Similarity=0.017 Sum_probs=96.8
Q ss_pred HHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEEec
Q 024066 15 EVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAP 94 (273)
Q Consensus 15 e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~~ldap 94 (273)
++...+|+||+|++.. ++.+++.. +.+ . .++. ||-+...-.. .+.+.+.+... + ...|+.+..+-
T Consensus 63 ~~~~~~D~vilavK~~-~~~~~l~~---l~~-~--~~~~-ivs~~nGi~~-~e~l~~~~~~~----~--vl~g~~~~~a~ 127 (307)
T 3ego_A 63 SINSDFDLLVVTVKQH-QLQSVFSS---LER-I--GKTN-ILFLQNGMGH-IHDLKDWHVGH----S--IYVGIVEHGAV 127 (307)
T ss_dssp SCCSCCSEEEECCCGG-GHHHHHHH---TTS-S--CCCE-EEECCSSSHH-HHHHHTCCCSC----E--EEEEEECCEEE
T ss_pred cccCCCCEEEEEeCHH-HHHHHHHH---hhc-C--CCCe-EEEecCCccH-HHHHHHhCCCC----c--EEEEEEeeceE
Confidence 3456899999999975 56677643 221 1 2334 5554444332 12333322110 0 00011111121
Q ss_pred CCCC--HHHHhcCceEEEeecCHHHHHHHHHHHHHh---cCCeEEeCCcChHHHHHHHHHHHHHH---------------
Q 024066 95 VSGG--VLAAEAGTLTFMVGGSEDAYQAAKPLFLSM---GKNTIYCGGAGNGAAAKICNNLTMAV--------------- 154 (273)
Q Consensus 95 v~G~--~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~---~~~i~~~G~~g~a~~~Kl~~n~~~~~--------------- 154 (273)
..+. ......| .+.+|.....-++++.+.+.| +-++.+..++-...--|++.|..+..
T Consensus 128 ~~~pg~v~~~~~g--~~~iG~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~ 205 (307)
T 3ego_A 128 RKSDTAVDHTGLG--AIKWSAFDDAEPDRLNILFQHNHSDFPIYYETDWYRLLTGKLIVNACINPLTALLQVKNGELLTT 205 (307)
T ss_dssp ECSSSEEEEEECC--CEEEEECTTCCGGGGTTTTSSCCTTSCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHS
T ss_pred ECCCCEEEEeeee--eEEEEeCCCCcHHHHHHHHHhhhCCCCcEechhHHHHHHHHHHHhhhhhHHHHHhcCCcchhhcC
Confidence 2211 1111122 344553211112333344444 33455555688889999998874332
Q ss_pred ------HHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHH
Q 024066 155 ------SMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALAS 228 (273)
Q Consensus 155 ------~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~~~~~~ 228 (273)
...++.|+.++++.. +++.+++.+....... .. ..+.|+.. +..+.. .-++.. ...+++.
T Consensus 206 ~~~~~l~~~l~~E~~~va~~~--~~~~~~~~~~~~~~~~--~~---~~sSM~qD-~~~gr~---tEid~i---~G~vv~~ 271 (307)
T 3ego_A 206 PAYLAFMKLVFQEACRILKLE--NEEKAWERVQAVCGQT--KE---NRSSMLVD-VIGGRQ---TEADAI---IGYLLKE 271 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHTCS--CHHHHHHHHHHHHHHT--TT---CCCHHHHH-HHHTCC---CSHHHH---HHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhcc--ChHHHHHHHHHHHHhc--CC---CCchHHHH-HHcCCc---ccHHHh---hhHHHHH
Confidence 234667777777654 2444444332110000 00 00111110 001110 012222 4568899
Q ss_pred HHHhCCCChHHHHHHHHHHHHHH
Q 024066 229 AKEVGVDCPLTSQAQDIYAKLCE 251 (273)
Q Consensus 229 a~~~g~~~~~~~~~~~~~~~a~~ 251 (273)
+++.|+++|..+...++.+....
T Consensus 272 a~~~gv~tP~~~~l~~li~~~e~ 294 (307)
T 3ego_A 272 ASLQGLDAVHLEFLYGSIKALER 294 (307)
T ss_dssp HHHTTCCCHHHHHHHHHHHHTC-
T ss_pred HHHcCCCCcHHHHHHHHHHHHHh
Confidence 99999999999999988875433
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=89.81 E-value=0.89 Score=40.09 Aligned_cols=65 Identities=17% Similarity=0.190 Sum_probs=49.6
Q ss_pred cCCCCCCCCHHHHHh--cCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhc
Q 024066 4 DMGVPTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNC 76 (273)
Q Consensus 4 ~~Ga~~~~s~~e~~~--~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~S-T~~P~~~~~l~~~~~~~ 76 (273)
+.|+...+|..|+++ +.|+|++|+|+....+.+.. +++. +..++++-- +.++++++++.+.+++.
T Consensus 48 ~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~----al~a----GkhVl~EKP~a~~~~ea~~l~~~a~~~ 115 (359)
T 3e18_A 48 QKGLKIYESYEAVLADEKVDAVLIATPNDSHKELAIS----ALEA----GKHVVCEKPVTMTSEDLLAIMDVAKRV 115 (359)
T ss_dssp TTTCCBCSCHHHHHHCTTCCEEEECSCGGGHHHHHHH----HHHT----TCEEEEESSCCSSHHHHHHHHHHHHHH
T ss_pred hcCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHH----HHHC----CCCEEeeCCCcCCHHHHHHHHHHHHHh
Confidence 357888899999988 79999999999887765542 3322 335777754 78899999999987753
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=89.77 E-value=0.54 Score=41.30 Aligned_cols=63 Identities=13% Similarity=0.171 Sum_probs=48.5
Q ss_pred CCCCCCCHHHHHh--cCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhc
Q 024066 6 GVPTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNC 76 (273)
Q Consensus 6 Ga~~~~s~~e~~~--~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~S-T~~P~~~~~l~~~~~~~ 76 (273)
|++..+|+.|+++ ++|+|++|+|+....+.+.. +++ .+..++++-- +.++++++++.+.+++.
T Consensus 60 ~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~----al~----~gk~v~~EKP~a~~~~~~~~l~~~a~~~ 125 (354)
T 3q2i_A 60 GARGHASLTDMLAQTDADIVILTTPSGLHPTQSIE----CSE----AGFHVMTEKPMATRWEDGLEMVKAADKA 125 (354)
T ss_dssp CCEEESCHHHHHHHCCCSEEEECSCGGGHHHHHHH----HHH----TTCEEEECSSSCSSHHHHHHHHHHHHHH
T ss_pred CCceeCCHHHHhcCCCCCEEEECCCcHHHHHHHHH----HHH----CCCCEEEeCCCcCCHHHHHHHHHHHHHh
Confidence 6777899999987 79999999999877665442 332 2336777765 88999999999988764
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=89.71 E-value=1 Score=39.23 Aligned_cols=63 Identities=14% Similarity=0.266 Sum_probs=48.2
Q ss_pred CC-CCCCCHHHHHh--cCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhc
Q 024066 6 GV-PTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNC 76 (273)
Q Consensus 6 Ga-~~~~s~~e~~~--~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~S-T~~P~~~~~l~~~~~~~ 76 (273)
|. +..+|..|+++ ++|+|++|+|+......+.. +++. +..++++-. +.++++++++.+.++++
T Consensus 48 ~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~----al~~----gk~v~~EKP~~~~~~e~~~l~~~a~~~ 114 (344)
T 3ezy_A 48 GVEKAYKDPHELIEDPNVDAVLVCSSTNTHSELVIA----CAKA----KKHVFCEKPLSLNLADVDRMIEETKKA 114 (344)
T ss_dssp TCSEEESSHHHHHHCTTCCEEEECSCGGGHHHHHHH----HHHT----TCEEEEESCSCSCHHHHHHHHHHHHHH
T ss_pred CCCceeCCHHHHhcCCCCCEEEEcCCCcchHHHHHH----HHhc----CCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 44 36889999998 79999999999877665542 3322 336888876 89999999999988763
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=89.16 E-value=0.12 Score=45.12 Aligned_cols=55 Identities=20% Similarity=0.332 Sum_probs=40.8
Q ss_pred CCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 9 TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 9 ~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
.+ |+.|++++||+||+|.|... .++.. ..+ ++|.+|+++++..|+. +++...+-.
T Consensus 174 ~~-~~~eav~~aDIVi~aT~s~~---pvl~~--~~l-----~~G~~V~~vGs~~p~~-~El~~~~~~ 228 (313)
T 3hdj_A 174 MA-APADIAAQADIVVTATRSTT---PLFAG--QAL-----RAGAFVGAIGSSLPHT-RELDDEALR 228 (313)
T ss_dssp EC-CHHHHHHHCSEEEECCCCSS---CSSCG--GGC-----CTTCEEEECCCSSTTC-CCCCHHHHH
T ss_pred Ee-CHHHHHhhCCEEEEccCCCC---cccCH--HHc-----CCCcEEEECCCCCCch-hhcCHHHHh
Confidence 45 99999999999999999853 23321 122 4578999999999984 777776643
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=89.14 E-value=0.61 Score=40.75 Aligned_cols=62 Identities=8% Similarity=0.071 Sum_probs=48.4
Q ss_pred CCCCCCHHHHHhc--CCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhc
Q 024066 7 VPTKETPFEVAEA--SDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNC 76 (273)
Q Consensus 7 a~~~~s~~e~~~~--advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~S-T~~P~~~~~l~~~~~~~ 76 (273)
++..+|..|++++ +|+|++|+|+....+-+.. +++. +..++++-- +.++++++++.+.++++
T Consensus 52 ~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~----al~~----Gk~vl~EKP~a~~~~e~~~l~~~a~~~ 116 (344)
T 3mz0_A 52 ATVYPNDDSLLADENVDAVLVTSWGPAHESSVLK----AIKA----QKYVFCEKPLATTAEGCMRIVEEEIKV 116 (344)
T ss_dssp CEEESSHHHHHHCTTCCEEEECSCGGGHHHHHHH----HHHT----TCEEEECSCSCSSHHHHHHHHHHHHHH
T ss_pred CeeeCCHHHHhcCCCCCEEEECCCchhHHHHHHH----HHHC----CCcEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 6778999999886 9999999999887765543 3332 336888776 88999999999987653
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=89.08 E-value=1.9 Score=42.06 Aligned_cols=140 Identities=12% Similarity=0.121 Sum_probs=83.7
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCCCCc
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENP 88 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iii-d~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~ 88 (273)
.++.. .+++||+||=+|+..-+++.-++.. +-+. .+++.|+. |+||.++. ++++.+.. . -
T Consensus 385 ~~~~~-~l~~aDlVIEAV~E~l~iK~~vf~~--le~~--~~~~aIlASNTSsl~i~---~ia~~~~~------p-----~ 445 (742)
T 3zwc_A 385 SSSTK-ELSTVDLVVEAVFEDMNLKKKVFAE--LSAL--CKPGAFLCTNTSALNVD---DIASSTDR------P-----Q 445 (742)
T ss_dssp ESCGG-GGGSCSEEEECCCSCHHHHHHHHHH--HHHH--SCTTCEEEECCSSSCHH---HHHTTSSC------G-----G
T ss_pred cCcHH-HHhhCCEEEEeccccHHHHHHHHHH--Hhhc--CCCCceEEecCCcCChH---HHHhhcCC------c-----c
Confidence 34443 4779999999999999987644431 2222 13443333 55555555 34443321 1 1
Q ss_pred eEEEecCCCCHHHHhcCceEEEeec---CHHHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHH
Q 024066 89 VMLDAPVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALT 164 (273)
Q Consensus 89 ~~ldapv~G~~~~a~~g~l~~~vgG---~~~~~~~~~~~l~~~~~~i~~~G~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~ 164 (273)
+|+-.=-+-.++. -.|+=++.| ++++++.+..+.+.+++..+.+.+ +| .+.|=+ ....+.|++.
T Consensus 446 r~ig~HFfnP~~~---m~LVEvi~g~~Ts~e~~~~~~~~~~~lgK~pV~vkd~pG------Fi~NRi---~~~~~~ea~~ 513 (742)
T 3zwc_A 446 LVIGTHFFSPAHV---MRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYG------FVGNRM---LAPYYNQGFF 513 (742)
T ss_dssp GEEEEECCSSTTT---CCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEECCCSTT------TTHHHH---HHHHHHHHHH
T ss_pred ccccccccCCCCC---CceEEEecCCCCCHHHHHHHHHHHHHhCCCCcccCCCCC------ccHHHH---hhHHHHHHHH
Confidence 3443333322221 144544444 568999999999999999888887 65 344544 3456777887
Q ss_pred HHHHcCCCHHHHHHHHh
Q 024066 165 LGQSLGISASTLTKILN 181 (273)
Q Consensus 165 la~~~Gl~~~~~~~~l~ 181 (273)
+.+. |.+++++-+++.
T Consensus 514 l~~e-G~~~~~id~a~~ 529 (742)
T 3zwc_A 514 LLEE-GSKPEDVDGVLE 529 (742)
T ss_dssp HHHT-TCCHHHHHHHHH
T ss_pred HHHc-CCCHHHHHHHHH
Confidence 7766 677776655553
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=89.03 E-value=0.82 Score=40.11 Aligned_cols=63 Identities=13% Similarity=0.285 Sum_probs=49.5
Q ss_pred CCCCCCCHHHHHhc--CCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhc
Q 024066 6 GVPTKETPFEVAEA--SDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNC 76 (273)
Q Consensus 6 Ga~~~~s~~e~~~~--advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~S-T~~P~~~~~l~~~~~~~ 76 (273)
|++..+|..|++++ .|+|++|+|+....+-+.. +++. +..++++-- +.++++++++.+.+++.
T Consensus 52 ~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~----al~a----GkhV~~EKPla~~~~e~~~l~~~a~~~ 117 (352)
T 3kux_A 52 AIPVVSDPQMLFNDPSIDLIVIPTPNDTHFPLAQS----ALAA----GKHVVVDKPFTVTLSQANALKEHADDA 117 (352)
T ss_dssp SCCEESCHHHHHHCSSCCEEEECSCTTTHHHHHHH----HHHT----TCEEEECSSCCSCHHHHHHHHHHHHHT
T ss_pred CCceECCHHHHhcCCCCCEEEEeCChHHHHHHHHH----HHHC----CCcEEEECCCcCCHHHHHHHHHHHHHc
Confidence 66778999999886 9999999999887665543 3332 336888887 89999999999987753
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=88.77 E-value=1.9 Score=37.37 Aligned_cols=63 Identities=14% Similarity=0.231 Sum_probs=48.0
Q ss_pred CCC-CCCCHHHHHh--cCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhc
Q 024066 6 GVP-TKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNC 76 (273)
Q Consensus 6 Ga~-~~~s~~e~~~--~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~S-T~~P~~~~~l~~~~~~~ 76 (273)
|.. ..+|..|+++ +.|+|++|+|+....+.+.. +++. +..++++-- +.++++++++.+.+++.
T Consensus 51 ~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~----al~a----Gk~Vl~EKP~a~~~~e~~~l~~~a~~~ 117 (329)
T 3evn_A 51 HLPKAYDKLEDMLADESIDVIYVATINQDHYKVAKA----ALLA----GKHVLVEKPFTLTYDQANELFALAESC 117 (329)
T ss_dssp CCSCEESCHHHHHTCTTCCEEEECSCGGGHHHHHHH----HHHT----TCEEEEESSCCSSHHHHHHHHHHHHHT
T ss_pred CCCcccCCHHHHhcCCCCCEEEECCCcHHHHHHHHH----HHHC----CCeEEEccCCcCCHHHHHHHHHHHHHc
Confidence 553 6789999998 79999999999887665542 3332 336888866 88999999999988753
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=88.54 E-value=1 Score=39.52 Aligned_cols=63 Identities=21% Similarity=0.182 Sum_probs=48.3
Q ss_pred CCCCCCCHHHHHh--cCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhc
Q 024066 6 GVPTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNC 76 (273)
Q Consensus 6 Ga~~~~s~~e~~~--~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~S-T~~P~~~~~l~~~~~~~ 76 (273)
|+...+|..|+++ +.|+|++|+|+....+-+.. +++. +..++++-- +.++++++++.+.+++.
T Consensus 74 g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~----al~a----Gk~Vl~EKP~a~~~~ea~~l~~~a~~~ 139 (350)
T 3rc1_A 74 GGEPVEGYPALLERDDVDAVYVPLPAVLHAEWIDR----ALRA----GKHVLAEKPLTTDRPQAERLFAVARER 139 (350)
T ss_dssp CSEEEESHHHHHTCTTCSEEEECCCGGGHHHHHHH----HHHT----TCEEEEESSSCSSHHHHHHHHHHHHHT
T ss_pred CCCCcCCHHHHhcCCCCCEEEECCCcHHHHHHHHH----HHHC----CCcEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 6677789999987 58999999999987765542 3332 335888866 88999999999987753
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=87.81 E-value=0.056 Score=46.19 Aligned_cols=48 Identities=13% Similarity=0.196 Sum_probs=32.4
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHH--HHHHcCCCCcccCCCCCCCeEEEEcCC
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHV--LDVYNGPNGLLQGGNSVRPQLLIDSST 60 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av--~~v~~~~~g~l~~~~~~~g~iiid~ST 60 (273)
|+...+++.++++++|+||+|+|.+... ..++. .+.+ .++.+++|+++
T Consensus 173 g~~~~~~~~~~~~~aDiVi~atp~~~~~~~~~~i~-----~~~l--~~g~~viDv~~ 222 (275)
T 2hk9_A 173 PLEVVNSPEEVIDKVQVIVNTTSVGLKDEDPEIFN-----YDLI--KKDHVVVDIIY 222 (275)
T ss_dssp CEEECSCGGGTGGGCSEEEECSSTTSSTTCCCSSC-----GGGC--CTTSEEEESSS
T ss_pred CCeeehhHHhhhcCCCEEEEeCCCCCCCCCCCCCC-----HHHc--CCCCEEEEcCC
Confidence 5555568888889999999999987421 11110 1221 35689999999
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=87.70 E-value=1.1 Score=38.97 Aligned_cols=62 Identities=11% Similarity=0.183 Sum_probs=45.0
Q ss_pred CC-CCCCCHHHHHh--cCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhh
Q 024066 6 GV-PTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSN 75 (273)
Q Consensus 6 Ga-~~~~s~~e~~~--~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~-ST~~P~~~~~l~~~~~~ 75 (273)
|+ +..++..|+++ ++|+|++|+|+......+.. +++ .+..++++- .+.++++++++.+.+++
T Consensus 55 g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~----al~----~G~~v~~eKp~~~~~~~~~~l~~~a~~ 120 (346)
T 3cea_A 55 GVETTYTNYKDMIDTENIDAIFIVAPTPFHPEMTIY----AMN----AGLNVFCEKPLGLDFNEVDEMAKVIKS 120 (346)
T ss_dssp CCSEEESCHHHHHTTSCCSEEEECSCGGGHHHHHHH----HHH----TTCEEEECSCCCSCHHHHHHHHHHHHT
T ss_pred CCCcccCCHHHHhcCCCCCEEEEeCChHhHHHHHHH----HHH----CCCEEEEcCCCCCCHHHHHHHHHHHHh
Confidence 66 56789999887 69999999999877665542 332 233577763 56789999998887764
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=87.36 E-value=1.4 Score=39.10 Aligned_cols=63 Identities=19% Similarity=0.282 Sum_probs=48.5
Q ss_pred CCCCCCCHHHHHhc--CCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhc
Q 024066 6 GVPTKETPFEVAEA--SDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNC 76 (273)
Q Consensus 6 Ga~~~~s~~e~~~~--advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~S-T~~P~~~~~l~~~~~~~ 76 (273)
|+...+|..|++++ .|+|++|+|+....+-+.. +++. +..++++-- +.++++++++.+.++++
T Consensus 49 g~~~~~~~~ell~~~~vD~V~i~tp~~~H~~~~~~----al~a----Gk~Vl~EKP~a~~~~e~~~l~~~a~~~ 114 (387)
T 3moi_A 49 GIPVFATLAEMMQHVQMDAVYIASPHQFHCEHVVQ----ASEQ----GLHIIVEKPLTLSRDEADRMIEAVERA 114 (387)
T ss_dssp TCCEESSHHHHHHHSCCSEEEECSCGGGHHHHHHH----HHHT----TCEEEECSCCCSCHHHHHHHHHHHHHH
T ss_pred CCCeECCHHHHHcCCCCCEEEEcCCcHHHHHHHHH----HHHC----CCceeeeCCccCCHHHHHHHHHHHHHh
Confidence 77888999999885 9999999999877665542 3332 335777765 78999999999988764
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=86.96 E-value=0.99 Score=39.76 Aligned_cols=63 Identities=13% Similarity=0.165 Sum_probs=48.9
Q ss_pred CCCCCCCHHHHHhc--CCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhc
Q 024066 6 GVPTKETPFEVAEA--SDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNC 76 (273)
Q Consensus 6 Ga~~~~s~~e~~~~--advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~S-T~~P~~~~~l~~~~~~~ 76 (273)
|++..+|..|++++ .|+|++|+|+....+-+.. +++. +..++++-- +.++++++++.+.+++.
T Consensus 50 ~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~----al~a----GkhVl~EKP~a~~~~ea~~l~~~a~~~ 115 (362)
T 3fhl_A 50 QASIVRSFKELTEDPEIDLIVVNTPDNTHYEYAGM----ALEA----GKNVVVEKPFTSTTKQGEELIALAKKK 115 (362)
T ss_dssp TSEEESCSHHHHTCTTCCEEEECSCGGGHHHHHHH----HHHT----TCEEEEESSCCSSHHHHHHHHHHHHHH
T ss_pred CCceECCHHHHhcCCCCCEEEEeCChHHHHHHHHH----HHHC----CCeEEEecCCCCCHHHHHHHHHHHHHc
Confidence 56778899999987 9999999999887665543 3332 336888876 88999999999987653
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=86.41 E-value=1.3 Score=38.92 Aligned_cols=62 Identities=10% Similarity=0.134 Sum_probs=48.1
Q ss_pred CCCCCCHHHHHhc--CCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhc
Q 024066 7 VPTKETPFEVAEA--SDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNC 76 (273)
Q Consensus 7 a~~~~s~~e~~~~--advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~S-T~~P~~~~~l~~~~~~~ 76 (273)
++..+|..|++++ .|+|++|+|+....+.+.. +++. +..++++-- +.++++++++.+.+++.
T Consensus 73 ~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~----al~a----Gk~Vl~EKPla~~~~e~~~l~~~a~~~ 137 (357)
T 3ec7_A 73 AKDYNDYHDLINDKDVEVVIITASNEAHADVAVA----ALNA----NKYVFCEKPLAVTAADCQRVIEAEQKN 137 (357)
T ss_dssp CEEESSHHHHHHCTTCCEEEECSCGGGHHHHHHH----HHHT----TCEEEEESSSCSSHHHHHHHHHHHHHH
T ss_pred CeeeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHH----HHHC----CCCEEeecCccCCHHHHHHHHHHHHHh
Confidence 6778899999884 8999999999987765543 3332 336888866 88999999999987653
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=86.38 E-value=1.1 Score=39.35 Aligned_cols=64 Identities=9% Similarity=0.082 Sum_probs=48.8
Q ss_pred CCCCCCCCHHHHHhc--CCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhc
Q 024066 5 MGVPTKETPFEVAEA--SDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNC 76 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~--advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~S-T~~P~~~~~l~~~~~~~ 76 (273)
.|++..+|..|++++ .|+|++|+|+....+-+.. +++. +..++++-- +.++++++++.+.++++
T Consensus 49 ~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~----al~a----Gk~Vl~EKP~a~~~~e~~~l~~~a~~~ 115 (349)
T 3i23_A 49 KGVNFTADLNELLTDPEIELITICTPAHTHYDLAKQ----AILA----GKSVIVEKPFCDTLEHAEELFALGQEK 115 (349)
T ss_dssp TTCEEESCTHHHHSCTTCCEEEECSCGGGHHHHHHH----HHHT----TCEEEECSCSCSSHHHHHHHHHHHHHT
T ss_pred CCCeEECCHHHHhcCCCCCEEEEeCCcHHHHHHHHH----HHHc----CCEEEEECCCcCCHHHHHHHHHHHHHc
Confidence 367788999999886 8999999999887665542 3322 336888766 78899999999987753
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=85.81 E-value=1.3 Score=38.92 Aligned_cols=63 Identities=16% Similarity=0.228 Sum_probs=48.2
Q ss_pred CCCCCCCHHHHHh--cCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhc
Q 024066 6 GVPTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNC 76 (273)
Q Consensus 6 Ga~~~~s~~e~~~--~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~S-T~~P~~~~~l~~~~~~~ 76 (273)
|++..+|..|+++ +.|+|++|+|+....+-+.. +++. +..++++-- +.++++++++.+.+++.
T Consensus 50 ~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~----al~a----GkhVl~EKPla~~~~e~~~l~~~a~~~ 115 (358)
T 3gdo_A 50 DAEVVHELEEITNDPAIELVIVTTPSGLHYEHTMA----CIQA----GKHVVMEKPMTATAEEGETLKRAADEK 115 (358)
T ss_dssp TSEEESSTHHHHTCTTCCEEEECSCTTTHHHHHHH----HHHT----TCEEEEESSCCSSHHHHHHHHHHHHHH
T ss_pred CCceECCHHHHhcCCCCCEEEEcCCcHHHHHHHHH----HHHc----CCeEEEecCCcCCHHHHHHHHHHHHHc
Confidence 5677889999988 68999999999887765543 3332 336778775 78899999999887753
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=85.63 E-value=2.2 Score=37.39 Aligned_cols=62 Identities=16% Similarity=0.147 Sum_probs=45.5
Q ss_pred CCCCCCHHHHHh--cCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 024066 7 VPTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 76 (273)
Q Consensus 7 a~~~~s~~e~~~--~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~-ST~~P~~~~~l~~~~~~~ 76 (273)
++..++..++++ ++|+|++|+|+.....-+.. +++ .+..++++- .+.++++++++.+.+++.
T Consensus 57 ~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~----al~----aGk~V~~EKP~a~~~~e~~~l~~~a~~~ 121 (362)
T 1ydw_A 57 TKIHGSYESLLEDPEIDALYVPLPTSLHVEWAIK----AAE----KGKHILLEKPVAMNVTEFDKIVDACEAN 121 (362)
T ss_dssp CEEESSHHHHHHCTTCCEEEECCCGGGHHHHHHH----HHT----TTCEEEECSSCSSSHHHHHHHHHHHHTT
T ss_pred CeeeCCHHHHhcCCCCCEEEEcCChHHHHHHHHH----HHH----CCCeEEEecCCcCCHHHHHHHHHHHHHc
Confidence 456789999987 59999999999877654442 332 233577775 578899999999988753
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=85.60 E-value=0.33 Score=40.89 Aligned_cols=56 Identities=4% Similarity=-0.115 Sum_probs=35.5
Q ss_pred CCCHHHHHhcCCEEEEeCCChHH--HHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 10 KETPFEVAEASDVVITMLPSSSH--VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~a--v~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
.+++.++ +++|+||+|+|.+.. +..++. .+.+ .++++++|+++. |..+ ++.+.+++
T Consensus 163 ~~~~~~~-~~~Divi~~tp~~~~~~~~~~l~-----~~~l--~~g~~viD~~~~-p~~t-~l~~~a~~ 220 (263)
T 2d5c_A 163 AVPLEKA-REARLLVNATRVGLEDPSASPLP-----AELF--PEEGAAVDLVYR-PLWT-RFLREAKA 220 (263)
T ss_dssp ECCGGGG-GGCSEEEECSSTTTTCTTCCSSC-----GGGS--CSSSEEEESCCS-SSSC-HHHHHHHH
T ss_pred hhhHhhc-cCCCEEEEccCCCCCCCCCCCCC-----HHHc--CCCCEEEEeecC-Cccc-HHHHHHHH
Confidence 4567777 899999999998742 112221 1221 356799999987 4433 46666654
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=85.60 E-value=1.3 Score=38.97 Aligned_cols=63 Identities=21% Similarity=0.298 Sum_probs=46.8
Q ss_pred CCCCCCCHHHHHh--cCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhc
Q 024066 6 GVPTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNC 76 (273)
Q Consensus 6 Ga~~~~s~~e~~~--~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~S-T~~P~~~~~l~~~~~~~ 76 (273)
|++..+|..|+++ +.|+|++|+|+....+-+.. .++. +..++++-- +.++++++++.+.+++.
T Consensus 52 ~~~~~~~~~~ll~~~~~D~V~i~tp~~~H~~~~~~----al~a----Gk~Vl~EKPla~~~~e~~~l~~~a~~~ 117 (364)
T 3e82_A 52 DVTVIASPEAAVQHPDVDLVVIASPNATHAPLARL----ALNA----GKHVVVDKPFTLDMQEARELIALAEEK 117 (364)
T ss_dssp TSEEESCHHHHHTCTTCSEEEECSCGGGHHHHHHH----HHHT----TCEEEECSCSCSSHHHHHHHHHHHHHT
T ss_pred CCcEECCHHHHhcCCCCCEEEEeCChHHHHHHHHH----HHHC----CCcEEEeCCCcCCHHHHHHHHHHHHHh
Confidence 5677889999988 78999999999887765543 3322 324666553 78999999999987653
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=85.51 E-value=1.2 Score=40.32 Aligned_cols=60 Identities=13% Similarity=0.154 Sum_probs=45.3
Q ss_pred CCCCHHHHHh--cCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 024066 9 TKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 76 (273)
Q Consensus 9 ~~~s~~e~~~--~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~-ST~~P~~~~~l~~~~~~~ 76 (273)
..+|..|+++ +.|+|++|+|+....+-+.. +++. +..++++. .+.++++++++.+.++++
T Consensus 138 ~~~~~~~ll~~~~vD~V~iatp~~~h~~~~~~----al~a----Gk~Vl~EKPla~~~~e~~~l~~~a~~~ 200 (433)
T 1h6d_A 138 DYSNFDKIAKDPKIDAVYIILPNSLHAEFAIR----AFKA----GKHVMCEKPMATSVADCQRMIDAAKAA 200 (433)
T ss_dssp CSSSGGGGGGCTTCCEEEECSCGGGHHHHHHH----HHHT----TCEEEECSSCCSSHHHHHHHHHHHHHH
T ss_pred ccCCHHHHhcCCCCCEEEEcCCchhHHHHHHH----HHHC----CCcEEEcCCCCCCHHHHHHHHHHHHHh
Confidence 5788999887 69999999999877665543 3322 33577875 577899999999988753
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=84.90 E-value=3 Score=36.11 Aligned_cols=63 Identities=13% Similarity=0.133 Sum_probs=47.5
Q ss_pred CC-CCCCCHHHHHh--cCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhc
Q 024066 6 GV-PTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNC 76 (273)
Q Consensus 6 Ga-~~~~s~~e~~~--~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~S-T~~P~~~~~l~~~~~~~ 76 (273)
|. +..+|..|+++ +.|+|++|+|+....+-+.. +++. +..++++-- +.++++++++.+.++++
T Consensus 50 ~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~----al~~----GkhVl~EKP~a~~~~e~~~l~~~a~~~ 116 (334)
T 3ohs_X 50 DIPKAYGSYEELAKDPNVEVAYVGTQHPQHKAAVML----CLAA----GKAVLCEKPMGVNAAEVREMVTEARSR 116 (334)
T ss_dssp TCSCEESSHHHHHHCTTCCEEEECCCGGGHHHHHHH----HHHT----TCEEEEESSSSSSHHHHHHHHHHHHHT
T ss_pred CCCcccCCHHHHhcCCCCCEEEECCCcHHHHHHHHH----HHhc----CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 55 46789999988 59999999999987665543 3332 336888864 88999999999987653
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=84.87 E-value=1.3 Score=38.95 Aligned_cols=63 Identities=10% Similarity=0.113 Sum_probs=47.2
Q ss_pred CCCCCCCHHHHHhcC--CEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhc
Q 024066 6 GVPTKETPFEVAEAS--DVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNC 76 (273)
Q Consensus 6 Ga~~~~s~~e~~~~a--dvvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~S-T~~P~~~~~l~~~~~~~ 76 (273)
+.+..+|..|++++. |+|++|+|+....+-+.. +++. +..++++-- +.++++++++.+.+++.
T Consensus 53 ~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~----al~a----GkhVl~EKPla~~~~e~~~l~~~a~~~ 118 (359)
T 3m2t_A 53 DIPVLDNVPAMLNQVPLDAVVMAGPPQLHFEMGLL----AMSK----GVNVFVEKPPCATLEELETLIDAARRS 118 (359)
T ss_dssp SCCEESSHHHHHHHSCCSEEEECSCHHHHHHHHHH----HHHT----TCEEEECSCSCSSHHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHhcCCCCCEEEEcCCcHHHHHHHHH----HHHC----CCeEEEECCCcCCHHHHHHHHHHHHHc
Confidence 567789999998854 999999999877665542 3322 335777765 88999999999887653
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=84.36 E-value=0.27 Score=42.44 Aligned_cols=56 Identities=11% Similarity=-0.022 Sum_probs=35.3
Q ss_pred CHHHHHhcCCEEEEeCCChHHH--HHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 12 TPFEVAEASDVVITMLPSSSHV--LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 12 s~~e~~~~advvi~~v~~~~av--~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
++.+++.++|+||.|+|.+... ..+... .+. ..++.+++|+++. |..++ +.+++++
T Consensus 197 ~~~~~~~~aDivIn~t~~~~~~~~~~~~i~----~~~--l~~~~~v~D~~y~-P~~T~-ll~~A~~ 254 (297)
T 2egg_A 197 EAETRLAEYDIIINTTSVGMHPRVEVQPLS----LER--LRPGVIVSDIIYN-PLETK-WLKEAKA 254 (297)
T ss_dssp HHHHTGGGCSEEEECSCTTCSSCCSCCSSC----CTT--CCTTCEEEECCCS-SSSCH-HHHHHHH
T ss_pred HHHhhhccCCEEEECCCCCCCCCCCCCCCC----HHH--cCCCCEEEEcCCC-CCCCH-HHHHHHH
Confidence 4566778999999999987431 111111 111 1356899999994 76654 6666655
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=83.87 E-value=1.2 Score=38.97 Aligned_cols=63 Identities=14% Similarity=0.106 Sum_probs=46.4
Q ss_pred CCCCCCCHHHHHhc--CCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 024066 6 GVPTKETPFEVAEA--SDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 76 (273)
Q Consensus 6 Ga~~~~s~~e~~~~--advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~-ST~~P~~~~~l~~~~~~~ 76 (273)
|++..+|+.|++++ .|+|++|+|+....+.+.. .++ .+..++++- -+.++++++++.+.++++
T Consensus 50 ~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~----al~----aGk~Vl~EKP~a~~~~e~~~l~~~a~~~ 115 (345)
T 3f4l_A 50 HIHFTSDLDEVLNDPDVKLVVVCTHADSHFEYAKR----ALE----AGKNVLVEKPFTPTLAQAKELFALAKSK 115 (345)
T ss_dssp TCEEESCTHHHHTCTTEEEEEECSCGGGHHHHHHH----HHH----TTCEEEECSSSCSSHHHHHHHHHHHHHH
T ss_pred CCceECCHHHHhcCCCCCEEEEcCChHHHHHHHHH----HHH----cCCcEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 67778999999886 8999999999987765543 332 132455543 277899999999987763
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=83.26 E-value=3 Score=35.57 Aligned_cols=73 Identities=18% Similarity=0.140 Sum_probs=52.6
Q ss_pred CCCCCCCHHHHHh--cCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhchhhhcc
Q 024066 6 GVPTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKK 82 (273)
Q Consensus 6 Ga~~~~s~~e~~~--~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~-ST~~P~~~~~l~~~~~~~g~~~~~ 82 (273)
|+. ..|..|+++ +.|+|++|+|+....+.+.. .++. +..++++- -+.++++++++.+..+++
T Consensus 51 g~~-~~~~~ell~~~~vD~V~i~tp~~~H~~~~~~----al~a----GkhVl~EKPla~~~~ea~~l~~~a~~~------ 115 (294)
T 1lc0_A 51 EVR-QISLEDALRSQEIDVAYICSESSSHEDYIRQ----FLQA----GKHVLVEYPMTLSFAAAQELWELAAQK------ 115 (294)
T ss_dssp TEE-BCCHHHHHHCSSEEEEEECSCGGGHHHHHHH----HHHT----TCEEEEESCSCSCHHHHHHHHHHHHHT------
T ss_pred CCC-CCCHHHHhcCCCCCEEEEeCCcHhHHHHHHH----HHHC----CCcEEEeCCCCCCHHHHHHHHHHHHHh------
Confidence 443 478999987 68999999999887665543 3332 33588885 678999999999988763
Q ss_pred CCCCCceEEEecCCC
Q 024066 83 DSWENPVMLDAPVSG 97 (273)
Q Consensus 83 g~~~g~~~ldapv~G 97 (273)
|..+..++...
T Consensus 116 ----g~~~~~~~~~r 126 (294)
T 1lc0_A 116 ----GRVLHEEHVEL 126 (294)
T ss_dssp ----TCCEEEECGGG
T ss_pred ----CCEEEEEEhHh
Confidence 25666666543
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=83.08 E-value=3.1 Score=35.82 Aligned_cols=62 Identities=15% Similarity=0.073 Sum_probs=41.2
Q ss_pred CCCC-CCCHHHHH-hcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhh
Q 024066 6 GVPT-KETPFEVA-EASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSN 75 (273)
Q Consensus 6 Ga~~-~~s~~e~~-~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~-ST~~P~~~~~l~~~~~~ 75 (273)
|+.. ..+..|++ .++|+|++|+|+....+-+.. +++. +..++++- .+.++++++++.+.+++
T Consensus 48 g~~~~~~~~~~~l~~~~D~V~i~tp~~~h~~~~~~----al~~----Gk~V~~EKP~~~~~~~~~~l~~~a~~ 112 (323)
T 1xea_A 48 RVSATCTDYRDVLQYGVDAVMIHAATDVHSTLAAF----FLHL----GIPTFVDKPLAASAQECENLYELAEK 112 (323)
T ss_dssp TCCCCCSSTTGGGGGCCSEEEECSCGGGHHHHHHH----HHHT----TCCEEEESCSCSSHHHHHHHHHHHHH
T ss_pred CCCccccCHHHHhhcCCCEEEEECCchhHHHHHHH----HHHC----CCeEEEeCCCcCCHHHHHHHHHHHHh
Confidence 5543 34444555 679999999998876554432 3321 22477774 67889999999988765
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=82.03 E-value=2.9 Score=37.90 Aligned_cols=59 Identities=19% Similarity=0.160 Sum_probs=45.2
Q ss_pred CCCCHHHHHh--cCCEEEEeCCChHHHHHHHcCCCCcccCCCCCC------CeEEEEc-CCCCHHHHHHHHHHHhh
Q 024066 9 TKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVR------PQLLIDS-STIDPQTSRNISAAVSN 75 (273)
Q Consensus 9 ~~~s~~e~~~--~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~------g~iiid~-ST~~P~~~~~l~~~~~~ 75 (273)
..+|..|+++ +.|+|++|+|+....+.+.. +++. + ..++++- .+.++++++++.+.+++
T Consensus 77 ~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~----al~a----G~~~~~~khVl~EKP~a~~~~e~~~l~~~a~~ 144 (438)
T 3btv_A 77 AFPTLESFASSSTIDMIVIAIQVASHYEVVMP----LLEF----SKNNPNLKYLFVEWALACSLDQAESIYKAAAE 144 (438)
T ss_dssp EESSHHHHHHCSSCSEEEECSCHHHHHHHHHH----HHHH----GGGCTTCCEEEEESSCCSSHHHHHHHHHHHHT
T ss_pred eeCCHHHHhcCCCCCEEEEeCCcHHHHHHHHH----HHHC----CCCcccceeEEecCcccCCHHHHHHHHHHHHH
Confidence 6789999987 59999999999877665543 2321 2 3688885 67899999999998765
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=81.57 E-value=3.5 Score=37.06 Aligned_cols=61 Identities=15% Similarity=0.157 Sum_probs=46.8
Q ss_pred CCCCCHHHHHhc-------CCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhc
Q 024066 8 PTKETPFEVAEA-------SDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNC 76 (273)
Q Consensus 8 ~~~~s~~e~~~~-------advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~S-T~~P~~~~~l~~~~~~~ 76 (273)
+..+|..|++++ .|+|++|+|+....+-+.. .++ .+..++++-- +.++++++++.+.+++.
T Consensus 92 ~~~~~~~~ll~~~~~~~~~vD~V~I~tp~~~H~~~~~~----al~----aGkhVl~EKPla~~~~ea~~l~~~a~~~ 160 (417)
T 3v5n_A 92 RVYSDFKEMAIREAKLKNGIEAVAIVTPNHVHYAAAKE----FLK----RGIHVICDKPLTSTLADAKKLKKAADES 160 (417)
T ss_dssp GBCSCHHHHHHHHHHCTTCCSEEEECSCTTSHHHHHHH----HHT----TTCEEEEESSSCSSHHHHHHHHHHHHHC
T ss_pred cccCCHHHHHhcccccCCCCcEEEECCCcHHHHHHHHH----HHh----CCCeEEEECCCcCCHHHHHHHHHHHHHc
Confidence 578899999876 9999999999877665442 332 2336888866 78999999999987753
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=81.33 E-value=2.3 Score=39.15 Aligned_cols=60 Identities=13% Similarity=0.144 Sum_probs=46.0
Q ss_pred CCCCCHHHHHh--cCCEEEEeCCChHHHHHHHcCCCCcccCCCCCC------CeEEEEc-CCCCHHHHHHHHHHHhh
Q 024066 8 PTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVR------PQLLIDS-STIDPQTSRNISAAVSN 75 (273)
Q Consensus 8 ~~~~s~~e~~~--~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~------g~iiid~-ST~~P~~~~~l~~~~~~ 75 (273)
+..+|..|+++ +.|+|++|+|+....+-+.. +++. + ..++++- -+.++++++++.+.+++
T Consensus 95 ~~~~d~~ell~~~~vD~V~I~tp~~~H~~~~~~----al~a----G~~~~~~khVl~EKPla~~~~ea~~l~~~a~~ 163 (479)
T 2nvw_A 95 TGFDSLESFAQYKDIDMIVVSVKVPEHYEVVKN----ILEH----SSQNLNLRYLYVEWALAASVQQAEELYSISQQ 163 (479)
T ss_dssp EEESCHHHHHHCTTCSEEEECSCHHHHHHHHHH----HHHH----SSSCSSCCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred eeeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHH----HHHC----CCCcCCceeEEEeCCCcCCHHHHHHHHHHHHH
Confidence 37889999986 69999999999877665543 3321 2 3588887 68889999999988765
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=80.38 E-value=3.8 Score=34.98 Aligned_cols=64 Identities=11% Similarity=0.181 Sum_probs=43.1
Q ss_pred CCCCCCCCHHHHHh--cCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCC-CHHHHHHHHHHHhhc
Q 024066 5 MGVPTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI-DPQTSRNISAAVSNC 76 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~--~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~-~P~~~~~l~~~~~~~ 76 (273)
.|..+.+|+.|+.+ ..|++++|+|.....+.+.+ .++. +-+.+|..|+. +.+..+++.+.+++.
T Consensus 48 ~G~~vy~sl~el~~~~~~D~viI~tP~~~~~~~~~e----a~~~----Gi~~iVi~t~G~~~~~~~~l~~~A~~~ 114 (288)
T 2nu8_A 48 LGLPVFNTVREAVAATGATASVIYVPAPFCKDSILE----AIDA----GIKLIITITEGIPTLDMLTVKVKLDEA 114 (288)
T ss_dssp TTEEEESSHHHHHHHHCCCEEEECCCGGGHHHHHHH----HHHT----TCSEEEECCCCCCHHHHHHHHHHHHHH
T ss_pred CCeeccCCHHHHhhcCCCCEEEEecCHHHHHHHHHH----HHHC----CCCEEEEECCCCCHHHHHHHHHHHHHc
Confidence 36677889999988 89999999999766544432 3322 22455556654 456677787777654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 273 | ||||
| d3cuma1 | 134 | a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydroge | 2e-33 | |
| d1vpda1 | 133 | a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydroge | 3e-26 | |
| d2cvza1 | 132 | a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydroge | 2e-25 | |
| d1vpda2 | 161 | c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase | 1e-22 | |
| d3cuma2 | 162 | c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase | 3e-17 | |
| d2b0ja2 | 242 | c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopt | 2e-14 | |
| d2cvza2 | 156 | c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase | 3e-12 | |
| d1i36a2 | 152 | c.2.1.6 (A:1-152) Conserved hypothetical protein M | 7e-09 | |
| d2i76a2 | 153 | c.2.1.6 (A:2-154) Hypothetical protein TM1727 {The | 2e-07 | |
| d1pgja2 | 178 | c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase | 3e-07 | |
| d2pv7a2 | 152 | c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA { | 3e-06 | |
| d2f1ka2 | 165 | c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {S | 2e-04 | |
| d2pgda2 | 176 | c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase | 0.004 |
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 134 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 116 bits (291), Expect = 2e-33
Identities = 57/129 (44%), Positives = 80/129 (62%)
Query: 138 AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVP 197
G G AK+CNN +AV M+G +EA+ LG + G+ A L +I+ SS W+ + YNP P
Sbjct: 2 DGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWP 61
Query: 198 GVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSK 257
GVME PASR+Y GGF ++LMAKDL LA +A+ P+ S A +Y L + G+ +
Sbjct: 62 GVMENAPASRDYSGGFMAQLMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQGYAER 121
Query: 258 DFSCVFQHY 266
DFS V + +
Sbjct: 122 DFSVVQKLF 130
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 133 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Score = 97.8 bits (243), Expect = 3e-26
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
Query: 139 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPG 198
G G K+ N + +A+++ +SEALTL G++ + + + A D+ P+
Sbjct: 3 GAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVM 62
Query: 199 VMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKD 258
P GF L KDL AL ++ VG PLT+ ++ L +GH + D
Sbjct: 63 DRNFKP-------GFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDD 115
Query: 259 FSCVFQHY 266
S + +Y
Sbjct: 116 HSALACYY 123
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 132 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 95.5 bits (237), Expect = 2e-25
Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 6/128 (4%)
Query: 139 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPG 198
G G A K NN +AV++ E L G+SA +++N+SS R ++++ P
Sbjct: 2 GAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRV 61
Query: 199 VMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKD 258
+ R + FA L+ KDL +A+ PL A+++Y D
Sbjct: 62 LT------RAFPKTFALGLLVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDAD 115
Query: 259 FSCVFQHY 266
+
Sbjct: 116 HVEALRLL 123
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Score = 89.5 bits (221), Expect = 1e-22
Identities = 52/136 (38%), Positives = 69/136 (50%), Gaps = 12/136 (8%)
Query: 1 MFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST 60
G T T +AE DV+ITMLP+S HV +V G NG+++G +LID S+
Sbjct: 38 DVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGT--VLIDMSS 95
Query: 61 IDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQA 120
I P SR I + LK K MLDAPVSGG A GTL+ MVGG + +
Sbjct: 96 IAPLASREI-----SDALKAK-----GVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDK 145
Query: 121 AKPLFLSMGKNTIYCG 136
L +M + ++ G
Sbjct: 146 YYDLMKAMAGSVVHTG 161
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 74.9 bits (183), Expect = 3e-17
Identities = 53/122 (43%), Positives = 73/122 (59%), Gaps = 12/122 (9%)
Query: 15 EVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVS 74
+ + +DVVI+MLP+S HV +Y +GLL L+++ STI P ++R I AA
Sbjct: 53 DAVQGADVVISMLPASQHVEGLYLDDDGLLAHIAP--GTLVLECSTIAPTSARKIHAA-- 108
Query: 75 NCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIY 134
+E+ MLDAPVSGG A AGTLTFMVGG +A + A+PLF +MG+N +
Sbjct: 109 ---ARER-----GLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNIFH 160
Query: 135 CG 136
G
Sbjct: 161 AG 162
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Score = 68.5 bits (167), Expect = 2e-14
Identities = 21/130 (16%), Positives = 38/130 (29%), Gaps = 16/130 (12%)
Query: 4 DMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDP 63
D+G+ E E +D+VIT LP + D+ + G ++ + TI
Sbjct: 126 DVGLKVTSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEG-----AIVTHACTIPT 180
Query: 64 QTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKP 123
I L + + + + G V + SE+A
Sbjct: 181 TKFAKIFKD-----LGRE------DLNITSYHPGCVPEMKGQVYIAEGYASEEAVNKLYE 229
Query: 124 LFLSMGKNTI 133
+
Sbjct: 230 IGKIARGKAF 239
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 61.1 bits (147), Expect = 3e-12
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 11/77 (14%)
Query: 60 TIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQ 119
+ +P+ SR ++ L+EK LDAPVSGG AEAGTLT M+GG E+A +
Sbjct: 90 SGEPEASRRLAER-----LREK-----GVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVE 139
Query: 120 AAKPLFLSMGKNTIYCG 136
+P L+ K ++ G
Sbjct: 140 RVRPF-LAYAKKVVHVG 155
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 51.4 bits (122), Expect = 7e-09
Identities = 19/124 (15%), Positives = 33/124 (26%), Gaps = 24/124 (19%)
Query: 13 PFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAA 72
E + VVI+ + + + +D + I P+T R S+
Sbjct: 50 SEEDVYSCPVVISAVTPGVALGAARRAGRH--------VRGIYVDINNISPETVRMASSL 101
Query: 73 VSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT 132
+ +DA + G V A G + + G N
Sbjct: 102 IEKG------------GFVDAAIMGSVRRKGADIRIIASGRDAEEFMKLNR----YGLNI 145
Query: 133 IYCG 136
G
Sbjct: 146 EVRG 149
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Score = 47.3 bits (111), Expect = 2e-07
Identities = 7/74 (9%), Positives = 16/74 (21%)
Query: 63 PQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAK 122
+ + + KK + + S + F + G E K
Sbjct: 77 LGDAVLVHCSGFLSSEIFKKSGRASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVK 136
Query: 123 PLFLSMGKNTIYCG 136
+ +
Sbjct: 137 KIAEEISGKYFVIP 150
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Score = 47.3 bits (111), Expect = 3e-07
Identities = 16/140 (11%), Positives = 35/140 (25%), Gaps = 10/140 (7%)
Query: 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQT 65
+ E + L L + ++ +D
Sbjct: 45 ASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGN 104
Query: 66 SRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLF 125
+ + + ++ L +SGG A G F GG+ ++ +P+
Sbjct: 105 AH-----FKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGP-AFFPGGTLSVWEEIRPIV 158
Query: 126 LSMGKNTI----YCGGAGNG 141
+ G+G
Sbjct: 159 EAAAAKADDGRPCVTMNGSG 178
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Score = 43.7 bits (102), Expect = 3e-06
Identities = 10/70 (14%), Positives = 20/70 (28%), Gaps = 1/70 (1%)
Query: 63 PQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAG-TLTFMVGGSEDAYQAA 121
+V L + + V+ P+ G +A+ A + G + Y+
Sbjct: 79 ENMLLADLTSVKREPLAKMLEVHTGAVLGLHPMFGADIASMAKQVVVRCDGRFPERYEWL 138
Query: 122 KPLFLSMGKN 131
G
Sbjct: 139 LEQIQIWGAK 148
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Score = 39.0 bits (89), Expect = 2e-04
Identities = 11/77 (14%), Positives = 21/77 (27%), Gaps = 10/77 (12%)
Query: 69 ISAAVSNCILKEKKDSWENPV---MLDAPVSGGVLAAEAG-------TLTFMVGGSEDAY 118
A+V I + W + + + G+ AE LT +
Sbjct: 89 DVASVKTAIAEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQL 148
Query: 119 QAAKPLFLSMGKNTIYC 135
+ + +G C
Sbjct: 149 ACLRSVLEPLGVKIYLC 165
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Score = 35.0 bits (79), Expect = 0.004
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 85 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIY 134
+ + + + VSGG A G + M GG+++A+ K +F +
Sbjct: 117 DKGILFVGSGVSGGEDGARYGP-SLMPGGNKEAWPHIKAIFQGIAAKVGT 165
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 273 | |||
| d3cuma1 | 134 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.96 | |
| d1vpda1 | 133 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.95 | |
| d2cvza1 | 132 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.94 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.94 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.92 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.87 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.82 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 99.71 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 99.64 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 99.53 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 99.21 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 98.86 | |
| d1mv8a1 | 98 | GDP-mannose 6-dehydrogenase, middle domain {Pseudo | 98.76 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 98.68 | |
| d1dlja1 | 98 | UDP-glucose dehydrogenase (UDPGDH), middle domain | 98.54 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 98.25 | |
| d1i36a1 | 112 | Conserved hypothetical protein MTH1747 {Archaeon M | 98.25 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 97.85 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 97.8 | |
| d2pgda1 | 297 | 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ov | 97.6 | |
| d1pgja1 | 300 | 6-phosphogluconate dehydrogenase (6PGD) {Trypanoso | 97.55 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 96.98 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 95.32 | |
| d2pgda1 | 297 | 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ov | 94.24 | |
| d1pgja1 | 300 | 6-phosphogluconate dehydrogenase (6PGD) {Trypanoso | 92.96 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 91.48 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 88.39 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 88.22 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 87.9 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 87.78 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 86.82 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 85.52 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 84.73 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 84.7 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 83.22 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 81.72 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 80.97 |
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.96 E-value=1.1e-28 Score=191.48 Aligned_cols=133 Identities=43% Similarity=0.710 Sum_probs=124.5
Q ss_pred CcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchh
Q 024066 137 GAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASK 216 (273)
Q Consensus 137 ~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 216 (273)
|.|+|+.+|++||++.++++++++|++.++++.|||++.++++++.++++||+++.+.++...+...+..++|+++|+++
T Consensus 1 P~GsG~~~Kl~~N~l~~~~~~a~aEal~la~~~Gld~~~~~eil~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 80 (134)
T d3cuma1 1 PDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGGFMAQ 80 (134)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCCHHHHHCCCSTTSSTTSGGGGTTCSSSBHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcccchhhhhhhhhhhhccchhhhcCCCCCCcchH
Confidence 57999999999999999999999999999999999999999999999999999887766555555567789999999999
Q ss_pred hHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhcC
Q 024066 217 LMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGG 269 (273)
Q Consensus 217 ~~~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~G~g~~d~sai~~~~~~~ 269 (273)
++.||++++++++++.|+|+|+++.++++|+.+.+.|+|++|+++|++.|++.
T Consensus 81 l~~KDl~l~~~~a~~~g~~~p~~~~a~~~~~~a~~~G~g~~D~s~i~~~~e~~ 133 (134)
T d3cuma1 81 LMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQGYAERDFSVVQKLFDPT 133 (134)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHCTT
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999765
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.95 E-value=1e-27 Score=185.76 Aligned_cols=125 Identities=29% Similarity=0.441 Sum_probs=117.8
Q ss_pred CcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchh
Q 024066 137 GAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASK 216 (273)
Q Consensus 137 ~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 216 (273)
++|+|+.+||++|++..+++.+++|++.++++.|||+++++++++.++++||+++.+.| ++.+++|+|+|+++
T Consensus 1 dvG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~Gid~~~~~~~l~~~~~~S~~~~~~~~-------~~~~~~~~~~f~~~ 73 (133)
T d1vpda1 1 DIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAP-------MVMDRNFKPGFRID 73 (133)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHHHH-------HHHTTCCCCSSBHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccccchhhhhccc-------hhhhccCCCCchHH
Confidence 47999999999999999999999999999999999999999999999999998876543 35578999999999
Q ss_pred hHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhc
Q 024066 217 LMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 268 (273)
Q Consensus 217 ~~~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~G~g~~d~sai~~~~~~ 268 (273)
++.||++++.+++++.|+|+|+++.+.+.|+.+.+.|+|++|+++|++++++
T Consensus 74 l~~KDl~l~~~~a~~~~~~~p~~~~~~~~~~~a~~~G~~~~D~s~i~~~~~~ 125 (133)
T d1vpda1 74 LHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALACYYEK 125 (133)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999865
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.94 E-value=2.3e-27 Score=183.56 Aligned_cols=126 Identities=25% Similarity=0.299 Sum_probs=117.1
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhh
Q 024066 138 AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKL 217 (273)
Q Consensus 138 ~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 217 (273)
+|+|+.+|++||++..+++.+++|++.++++.|||+++++++++.++++||.++.+.| . .+..++|+|+|++++
T Consensus 1 VG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~vl~~s~~~s~~~~~~~p--~----~~~~~~~~~~f~~~~ 74 (132)
T d2cvza1 1 VGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIP--Q----RVLTRAFPKTFALGL 74 (132)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCBHHHHHTHH--H----HTTTSCCCCSSBHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhhhhhhhhhhhhh--H----HHHHHhhhhhhHHHH
Confidence 6899999999999999999999999999999999999999999999999988765432 1 356789999999999
Q ss_pred HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhcC
Q 024066 218 MAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGG 269 (273)
Q Consensus 218 ~~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~G~g~~d~sai~~~~~~~ 269 (273)
+.||++++.+++++.|+|+|+++.+.++|+.+.+.|+|++|+++|++++++.
T Consensus 75 ~~KDl~l~~~~a~~~g~~~pl~~~~~~~~~~a~~~g~~~~D~s~i~~~~e~~ 126 (132)
T d2cvza1 75 LVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALRLLERW 126 (132)
T ss_dssp HHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHCTTSBGGGGHHHHHHH
T ss_pred HhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998763
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.94 E-value=5.9e-27 Score=187.28 Aligned_cols=123 Identities=41% Similarity=0.582 Sum_probs=114.7
Q ss_pred cccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhc
Q 024066 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEK 81 (273)
Q Consensus 2 l~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~ 81 (273)
+.+.|++.+.++.|++++||+||+|||+++++++|+++.+++++.+ .++++|||+||++|++++++++.++++
T Consensus 39 ~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~~~~~--~~g~iiid~sT~~p~~~~~~~~~~~~~----- 111 (161)
T d1vpda2 39 VIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGA--KPGTVLIDMSSIAPLASREISDALKAK----- 111 (161)
T ss_dssp HHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHC--CTTCEEEECSCCCHHHHHHHHHHHHTT-----
T ss_pred HHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcchhhcc--CCCCEEEECCCCCHHHHHHHHHHHHHc-----
Confidence 4567899999999999999999999999999999999888888874 567999999999999999999999763
Q ss_pred cCCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeC
Q 024066 82 KDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCG 136 (273)
Q Consensus 82 ~g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G 136 (273)
|++|+|+||+|+|..++.|++++|+||+++.|++++|+|+.++++++|+|
T Consensus 112 -----g~~~vdapv~gg~~~a~~g~l~~~~gG~~~~~~~~~~il~~~~~~i~~~G 161 (161)
T d1vpda2 112 -----GVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTG 161 (161)
T ss_dssp -----TCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHTTEEEEEEEE
T ss_pred -----CCceecccccCChhHHhcCCeEEEEcCCHHHHHHHHHHHHHhcCceEECC
Confidence 38999999999999999999999999999999999999999999999997
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.92 E-value=2.4e-25 Score=177.97 Aligned_cols=123 Identities=43% Similarity=0.683 Sum_probs=113.7
Q ss_pred cccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhc
Q 024066 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEK 81 (273)
Q Consensus 2 l~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~ 81 (273)
+.+.|+..+.++.|++.++|+|++||++++++++|+....++.+.+ .++++|||+||++|++++++++.++++
T Consensus 40 ~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~~~~~l--~~g~iiid~st~~p~~~~~~~~~~~~~----- 112 (162)
T d3cuma2 40 LVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGLLAHI--APGTLVLECSTIAPTSARKIHAAARER----- 112 (162)
T ss_dssp HHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTCHHHHS--CTTCEEEECSCCCHHHHHHHHHHHHHT-----
T ss_pred hhhhhccccchhhhhccccCeeeecccchhhHHHHHhccccccccC--CCCCEEEECCCCCHHHHHHHHHHHHHC-----
Confidence 3456888899999999999999999999999999998878888764 567899999999999999999999874
Q ss_pred cCCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeC
Q 024066 82 KDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCG 136 (273)
Q Consensus 82 ~g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G 136 (273)
|++|+|+||+|+|.+++.|++++|+||++++|++++|+|+.|+++++|+|
T Consensus 113 -----gi~~~dapv~Gg~~~a~~G~l~~~~gG~~~~~~~~~~il~~~~~~v~~~G 162 (162)
T d3cuma2 113 -----GLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNIFHAG 162 (162)
T ss_dssp -----TCEEEECCEESCHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred -----CCcEEecccccCccccccCCeEEEecCCHHHHHHHHHHHHHHcCccEECc
Confidence 38999999999999999999999999999999999999999999999997
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.87 E-value=1e-22 Score=161.45 Aligned_cols=110 Identities=33% Similarity=0.543 Sum_probs=98.1
Q ss_pred CHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEE
Q 024066 12 TPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML 91 (273)
Q Consensus 12 s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~~l 91 (273)
+..+.+.++|++|+|+|++.++..+.. ++++.+ .++++|||+||++|+++++++++++++ |++|+
T Consensus 47 ~~~~~~~~~~~~i~~~~~~~~v~~~~~---~l~~~~--~~~~~iid~sT~~p~~~~~~~~~~~~~----------gi~~l 111 (156)
T d2cvza2 47 VPLERVAEARVIFTCLPTTREVYEVAE---ALYPYL--REGTYWVDATSGEPEASRRLAERLREK----------GVTYL 111 (156)
T ss_dssp CCGGGGGGCSEEEECCSSHHHHHHHHH---HHTTTC--CTTEEEEECSCCCHHHHHHHHHHHHTT----------TEEEE
T ss_pred cccccccceeEEEecccchhhhhhhhc---cccccc--cccccccccccCCHHHHHHHHHHHHHc----------CCeEE
Confidence 345667789999999999999887764 577664 567999999999999999999999864 38999
Q ss_pred EecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCC
Q 024066 92 DAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG 137 (273)
Q Consensus 92 dapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~ 137 (273)
|+||+|+|+.|.+|+|++|+||++++|++++|+| .++++++|+||
T Consensus 112 dapVsGg~~~A~~G~L~~~vgG~~~~~~~~~p~L-~~~~~v~~~GP 156 (156)
T d2cvza2 112 DAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFL-AYAKKVVHVGP 156 (156)
T ss_dssp ECCEESHHHHHHHTCEEEEEESCHHHHHHHGGGC-TTEEEEEEEES
T ss_pred eccccCchhhhccCCEEEEEeCCHHHHHHHHHHH-HhcCcCEEeCc
Confidence 9999999999999999999999999999999999 59999999996
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.82 E-value=2.5e-21 Score=156.34 Aligned_cols=112 Identities=17% Similarity=0.242 Sum_probs=99.4
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCC
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 85 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~ 85 (273)
|+..++++.+++..+|++|+|+++++++.+++. ++++.+ .++++|||+||++|.+++++++.+.++
T Consensus 53 ~a~~~~~~~~~~~~~~~ii~~~~~~~~v~~v~~---~l~~~~--~~g~iiid~sT~~~~~~~~~~~~~~~~--------- 118 (176)
T d2pgda2 53 GAHSLEEMVSKLKKPRRIILLVKAGQAVDNFIE---KLVPLL--DIGDIIIDGGNSEYRDTMRRCRDLKDK--------- 118 (176)
T ss_dssp ECSSHHHHHHHBCSSCEEEECSCTTHHHHHHHH---HHHHHC--CTTCEEEECSCCCHHHHHHHHHHHHHT---------
T ss_pred chhhhhhhhhhhcccceEEEecCchHHHHHHHH---HHHhcc--ccCcEEEecCcchhHHHHHHHHHHHhc---------
Confidence 455566777888899999999999999999975 466653 467899999999999999999999764
Q ss_pred CCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeE
Q 024066 86 ENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTI 133 (273)
Q Consensus 86 ~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~ 133 (273)
|+.|+|+||+|++..|+.|+ ++|+||++++|++++|+|+.|++++.
T Consensus 119 -g~~~ldapvsGg~~~A~~G~-~~~~gG~~~~~~~~~~il~~~~~kv~ 164 (176)
T d2pgda2 119 -GILFVGSGVSGGEDGARYGP-SLMPGGNKEAWPHIKAIFQGIAAKVG 164 (176)
T ss_dssp -TCEEEEEEEESHHHHHHHCC-EEEEEECTTTHHHHHHHHHHHSCBCT
T ss_pred -CCceeccccccCcccccCCc-EEEcCCCHHHHHHHHHHHHHHhcccC
Confidence 38999999999999999999 89999999999999999999999874
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.71 E-value=6.5e-18 Score=136.10 Aligned_cols=110 Identities=14% Similarity=0.231 Sum_probs=96.5
Q ss_pred HHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEEecC
Q 024066 16 VAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPV 95 (273)
Q Consensus 16 ~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~~ldapv 95 (273)
.+..++.++.++++...+++++.. +...+ ..++++||+||++|++++++++.+.++ ++.|+|+||
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~iii~~st~~~~~~~~~~~~l~~~----------~~~~ldapv 129 (178)
T d1pgja2 65 SLKKPRKALILVQAGAATDSTIEQ---LKKVF--EKGDILVDTGNAHFKDQGRRAQQLEAA----------GLRFLGMGI 129 (178)
T ss_dssp HBCSSCEEEECCCCSHHHHHHHHH---HHHHC--CTTCEEEECCCCCHHHHHHHHHHHHTT----------TCEEEEEEE
T ss_pred hcccceEEEEeecCcchhhhhhhh---hhhhc--cccceecccCccchhHHHHHHHHHhhc----------ceeEecccc
Confidence 445789999999999999888753 44432 456899999999999999999998763 389999999
Q ss_pred CCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeE----EeCCcChH
Q 024066 96 SGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTI----YCGGAGNG 141 (273)
Q Consensus 96 ~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~----~~G~~g~a 141 (273)
+|++..|..|+ ++|+||++++|++++|+|+.+++++. |+|+.|+|
T Consensus 130 ~g~~~~a~~g~-~~mvgG~~~~~~~v~pil~~~~~~~~~~~~~~g~~G~G 178 (178)
T d1pgja2 130 SGGEEGARKGP-AFFPGGTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSG 178 (178)
T ss_dssp ESHHHHHHHCC-EEEEEECHHHHHHHHHHHHHHSCBCTTSCBSCCCCCST
T ss_pred cCCcchhcCCc-EEEeeCCHHHHHHHHHHHHHHhccccCCCCccCCCCCC
Confidence 99999999998 89999999999999999999999988 99999875
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.64 E-value=1.1e-16 Score=125.52 Aligned_cols=108 Identities=20% Similarity=0.223 Sum_probs=85.2
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCC
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 84 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~ 84 (273)
.|+.+++|+.|++++||+||+|||++.+.+.+.. +... .++++||+||++|++++++++.+++
T Consensus 42 ~~~~~~~~~~e~~~~~diIi~~v~~~~~~~~~~~----~~~~----~~~~~id~st~~p~~~~~l~~~~~~--------- 104 (152)
T d1i36a2 42 RTVGVTETSEEDVYSCPVVISAVTPGVALGAARR----AGRH----VRGIYVDINNISPETVRMASSLIEK--------- 104 (152)
T ss_dssp HHHTCEECCHHHHHTSSEEEECSCGGGHHHHHHH----HHTT----CCSEEEECSCCCHHHHHHHHHHCSS---------
T ss_pred hcccccccHHHHHhhcCeEEEEecCchHHHHHHh----hccc----CCceeeccCcCCHHHHHHHHHHHhc---------
Confidence 3566788999999999999999999877654432 2222 2479999999999999999998753
Q ss_pred CCCceEEEecCCCCHHHHhcCceEEEeecCH-HHHHHHHHHHHHhcCCeEEeCC
Q 024066 85 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSE-DAYQAAKPLFLSMGKNTIYCGG 137 (273)
Q Consensus 85 ~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~-~~~~~~~~~l~~~~~~i~~~G~ 137 (273)
..|+|+||+|+++.+..++. ++++|+. +.+++ |+.++.++.|+|+
T Consensus 105 ---~~~~d~~v~g~~~~~~~~~~-~~~~G~~~~~~~~----l~~~g~~i~~~G~ 150 (152)
T d1i36a2 105 ---GGFVDAAIMGSVRRKGADIR-IIASGRDAEEFMK----LNRYGLNIEVRGR 150 (152)
T ss_dssp ---SEEEEEEECSCHHHHGGGCE-EEEESTTHHHHHG----GGGGTCEEEECSS
T ss_pred ---cCCCcccccCCcccccCCcE-EEEECCCHHHHHH----HHHcCCeeeEcCC
Confidence 35999999999999988875 5555554 44443 7889999999997
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=99.53 E-value=1.3e-14 Score=121.33 Aligned_cols=116 Identities=15% Similarity=0.077 Sum_probs=97.6
Q ss_pred cCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccC
Q 024066 4 DMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKD 83 (273)
Q Consensus 4 ~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g 83 (273)
+.|+++++|+.|++++||+||+|||+++.+++|+. ++.+++ +++.+|+|+||++|..++++.+.+.++
T Consensus 126 e~Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi~---~I~~~l--~~g~Iiid~STi~~~~~~~l~e~l~~k------- 193 (242)
T d2b0ja2 126 DVGLKVTSDDREAVEGADIVITWLPKGNKQPDIIK---KFADAI--PEGAIVTHACTIPTTKFAKIFKDLGRE------- 193 (242)
T ss_dssp GGTCEEESCHHHHHTTCSEEEECCTTCTTHHHHHH---HHGGGS--CTTCEEEECSSSCHHHHHHHHHHTTCT-------
T ss_pred HCCCEEECCHHHHHhcCCeEEEeeecHHHHHHHHH---HHHhhC--CCCcEEEecCCCcHHHHHHHHHhcccC-------
Confidence 56899999999999999999999999999999985 577764 567899999999999999999988653
Q ss_pred CCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEe
Q 024066 84 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYC 135 (273)
Q Consensus 84 ~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~ 135 (273)
+++|++.+.+++|. ...+.+.++.+++++.++++.++|+.+|++++.+
T Consensus 194 ---gi~vi~~hp~a~pe-~~g~~li~~~~aseE~iekv~elles~Gk~~~vv 241 (242)
T d2b0ja2 194 ---DLNITSYHPGCVPE-MKGQVYIAEGYASEEAVNKLYEIGKIARGKAFKM 241 (242)
T ss_dssp ---TSEEEECBCSSCTT-TCCCEEEEESSSCHHHHHHHHHHHHHHHSCEEEE
T ss_pred ---CCEEECCCccCcCc-cccceEEecCCCCHHHHHHHHHHHHHHCCCeEeC
Confidence 37888666666553 4445667777889999999999999999987765
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=99.21 E-value=3.3e-13 Score=105.26 Aligned_cols=114 Identities=13% Similarity=0.047 Sum_probs=86.1
Q ss_pred cccCCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhc
Q 024066 2 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEK 81 (273)
Q Consensus 2 l~~~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~ 81 (273)
|.+.+...+.|+.|+++++|+||+|||++ ++.+|+.+ +. .++++||++|+..|....+ ... +
T Consensus 38 l~~~~~~~~~~~~~~~~~~DiVil~v~d~-~i~~v~~~---l~-----~~~~ivi~~s~~~~~~~l~---~~~------~ 99 (153)
T d2i76a2 38 LAEVYGGKAATLEKHPELNGVVFVIVPDR-YIKTVANH---LN-----LGDAVLVHCSGFLSSEIFK---KSG------R 99 (153)
T ss_dssp HHHHTCCCCCSSCCCCC---CEEECSCTT-THHHHHTT---TC-----CSSCCEEECCSSSCGGGGC---SSS------E
T ss_pred hhhcccccccchhhhhccCcEEEEeccch-hhhHHHhh---hc-----ccceeeeecccchhhhhhh---hhc------c
Confidence 44566777889999999999999999975 66778753 32 3568999999998854321 111 1
Q ss_pred cCCCCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHHhcCCeEEeCC
Q 024066 82 KDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG 137 (273)
Q Consensus 82 ~g~~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~~~~~i~~~G~ 137 (273)
. +++++++|..+++..+..++++++++|++++++.++++++.+|.+++++++
T Consensus 100 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~l~~~lG~~~~~i~~ 151 (153)
T d2i76a2 100 A----SIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKYFVIPS 151 (153)
T ss_dssp E----EEEECSCC--CTTGGGCGGGCCEEECCCTTTHHHHHHHHHHHCSCEEECCG
T ss_pred c----cceeeeecccccchhhhccCcEEEEeCCHHHHHHHHHHHHHHCCcEEEeCC
Confidence 1 378899999999888888888999999999999999999999999999864
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=98.86 E-value=5.6e-09 Score=80.54 Aligned_cols=105 Identities=17% Similarity=0.174 Sum_probs=81.8
Q ss_pred CCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceE
Q 024066 11 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVM 90 (273)
Q Consensus 11 ~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~~ 90 (273)
.+..+.+.++|++++|+|... +..++.. +.+.+ .++.+|+|+||+.+...+++.+.+. .+|
T Consensus 45 ~~~~~~~~~~~~v~~~~~~~~-~~~v~~~---~~~~~--~~~~iiiD~~Svk~~~~~~~~~~~~-------------~~~ 105 (152)
T d2pv7a2 45 AVAESILANADVVIVSVPINL-TLETIER---LKPYL--TENMLLADLTSVKREPLAKMLEVHT-------------GAV 105 (152)
T ss_dssp GGHHHHHTTCSEEEECSCGGG-HHHHHHH---HGGGC--CTTSEEEECCSCCHHHHHHHHHHCS-------------SEE
T ss_pred cccchhhhhccccccccchhh-heeeeec---ccccc--cCCceEEEecccCHHHHHHHHHHcc-------------CCE
Confidence 455677889999999999764 4455542 55443 4678999999999999998876542 245
Q ss_pred E-EecCCCCHHHHhcCceEEEe-ecCHHHHHHHHHHHHHhcCCeEE
Q 024066 91 L-DAPVSGGVLAAEAGTLTFMV-GGSEDAYQAAKPLFLSMGKNTIY 134 (273)
Q Consensus 91 l-dapv~G~~~~a~~g~l~~~v-gG~~~~~~~~~~~l~~~~~~i~~ 134 (273)
+ +.|++|+......++..+++ |++++.++++.++|+.+|.++++
T Consensus 106 v~~hP~~Gp~~~~~~g~~~v~~~g~~~~~~~~~~~ll~~~Ga~v~e 151 (152)
T d2pv7a2 106 LGLHPMFGADIASMAKQVVVRCDGRFPERYEWLLEQIQIWGAKIYQ 151 (152)
T ss_dssp EEEEECSCTTCSCCTTCEEEEEEEECGGGTHHHHHHHHHTTCEEEE
T ss_pred EEecccCCCcccccCCcEEEEecCCCHHHHHHHHHHHHHhCCEEEe
Confidence 4 68999998888888766665 77888999999999999998875
|
| >d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: GDP-mannose 6-dehydrogenase, middle domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.76 E-value=6e-08 Score=69.11 Aligned_cols=94 Identities=13% Similarity=0.151 Sum_probs=75.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhH
Q 024066 139 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLM 218 (273)
Q Consensus 139 g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 218 (273)
..|..+|++.|.+.+..++.++|...+|++.|+|...+.+.+.... ++. ....+ +.. .++|...++
T Consensus 2 e~AEl~K~~~N~~~a~kIsf~Nel~~lc~~~g~d~~~v~~~~~~d~---ri~-----~~~~~---~~p---G~G~GG~Cl 67 (98)
T d1mv8a1 2 EVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDH---KLN-----LSRYY---MRP---GFAFGGSCL 67 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHTTCT---TTT-----TSSTT---CSC---CSCCCSSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCc---ccc-----ccccc---cCC---cccCCcccc
Confidence 3689999999999999999999999999999999999999986531 110 00000 001 136778999
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 024066 219 AKDLNLALASAKEVGVDCPLTSQAQDIY 246 (273)
Q Consensus 219 ~KD~~~~~~~a~~~g~~~~~~~~~~~~~ 246 (273)
.||+..+...+++.|++.++++.+.+.-
T Consensus 68 pKD~~al~~~a~~~~~~~~ll~~~~~~N 95 (98)
T d1mv8a1 68 PKDVRALTYRASQLDVEHPMLGSLMRSN 95 (98)
T ss_dssp HHHHHHHHHHHHHTTCCCTTGGGHHHHH
T ss_pred chhHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 9999999999999999999999888654
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=98.68 E-value=2.2e-08 Score=78.19 Aligned_cols=111 Identities=10% Similarity=0.174 Sum_probs=81.2
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCce
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPV 89 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~ 89 (273)
..+..|++++||+||+|+|.. ++++++.. +.+.+ .++.+|+|++|+.+...+.+.+..... -+.+
T Consensus 48 ~~~~~~~~~~~DiIilavp~~-~~~~vl~~---l~~~l--~~~~iv~~~~s~~~~~~~~~~~~~~~~---------~~~h 112 (165)
T d2f1ka2 48 AGQDLSLLQTAKIIFLCTPIQ-LILPTLEK---LIPHL--SPTAIVTDVASVKTAIAEPASQLWSGF---------IGGH 112 (165)
T ss_dssp EESCGGGGTTCSEEEECSCHH-HHHHHHHH---HGGGS--CTTCEEEECCSCCHHHHHHHHHHSTTC---------EEEE
T ss_pred eeeecccccccccccccCcHh-hhhhhhhh---hhhhc--ccccceeeccccchHHHHHHHHhhccc---------ccce
Confidence 345567899999999999965 77888863 55543 456899999999988888776654321 1256
Q ss_pred EEEecCCCCHHHHhc----CceEEEe---ecCHHHHHHHHHHHHHhcCCeEEe
Q 024066 90 MLDAPVSGGVLAAEA----GTLTFMV---GGSEDAYQAAKPLFLSMGKNTIYC 135 (273)
Q Consensus 90 ~ldapv~G~~~~a~~----g~l~~~v---gG~~~~~~~~~~~l~~~~~~i~~~ 135 (273)
.+.+|..+|+..+.. +...+++ +++++.++.++++++.+|.++++|
T Consensus 113 ~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~~~~~~~v~~l~~~lG~~v~~c 165 (165)
T d2f1ka2 113 PMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVLEPLGVKIYLC 165 (165)
T ss_dssp ECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHHHHHHHGGGTCEEEEC
T ss_pred eeecccccchhhhcccccCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCEEEeC
Confidence 667777777766543 3434444 788999999999999999998875
|
| >d1dlja1 a.100.1.4 (A:197-294) UDP-glucose dehydrogenase (UDPGDH), middle domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: UDP-glucose dehydrogenase (UDPGDH), middle domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.54 E-value=1.1e-06 Score=62.35 Aligned_cols=90 Identities=16% Similarity=0.097 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhHH
Q 024066 140 NGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMA 219 (273)
Q Consensus 140 ~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 219 (273)
.|+.+|++.|.+++..++.++|...+|++.|++..++.+.+.... .+ .+ .. + +...+|...++.
T Consensus 3 eAE~~K~~~N~fla~kIsf~Ne~~~lc~~~g~d~~~v~~~~~~d~---~~----~~--~~----~---~pg~g~GG~Clp 66 (98)
T d1dlja1 3 EAEAVKLFANTYLALRVAYFNELDTYAESRKLNSHMIIQGISYDD---RI----GM--HY----N---NPSFGYGGYSLP 66 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTST---TT----CS--SS----C---CCCSSCCSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhcc---cc----CC--cc----c---cCCCCcccccCc
Confidence 589999999999999999999999999999999999998886542 11 00 00 0 112357788999
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 024066 220 KDLNLALASAKEVGVDCPLTSQAQDIYA 247 (273)
Q Consensus 220 KD~~~~~~~a~~~g~~~~~~~~~~~~~~ 247 (273)
||...++ +.+.|++.++++++.+.-+
T Consensus 67 KD~~al~--~~~~~~~~~ll~~~~~~N~ 92 (98)
T d1dlja1 67 KDTKQLL--ANYNNIPQTLIEAIVSSNN 92 (98)
T ss_dssp HHHHHHH--HHHTTSSCSHHHHHHHHHH
T ss_pred ccHHHHH--HHhcCCCcHHHHHHHHHHH
Confidence 9999885 5677999999999887654
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.25 E-value=2e-06 Score=69.00 Aligned_cols=124 Identities=12% Similarity=-0.004 Sum_probs=79.8
Q ss_pred CCCCCHHHHHhcCCEEEEeCCChH---------HHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchh
Q 024066 8 PTKETPFEVAEASDVVITMLPSSS---------HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCIL 78 (273)
Q Consensus 8 ~~~~s~~e~~~~advvi~~v~~~~---------av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~ 78 (273)
...++..+++++||++|+|||+|. .+.+++.....++... .++.+||..||+.|.+++++...+.+...
T Consensus 65 ~~~~~~~~~i~~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~--~~~~liii~STv~pGtt~~~~~~~l~~~~ 142 (202)
T d1mv8a2 65 SGTTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREK--SERHTVVVRSTVLPGTVNNVVIPLIEDCS 142 (202)
T ss_dssp EEESCHHHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTC--CSCCEEEECSCCCTTHHHHTHHHHHHHHH
T ss_pred ccCCCHHHHHhhCCEEEEecCccccccccccchhhhhhhhhhhheeecc--cCCcceeeccccCCcchhhhhhhhhhccc
Confidence 346788999999999999999862 2233332111233321 34579999999999999998776533100
Q ss_pred hhccCCCCCceEEEecCCCCHHHHhc---CceEEEeec-CHHHHHHHHHHHHHhcCCeEEe
Q 024066 79 KEKKDSWENPVMLDAPVSGGVLAAEA---GTLTFMVGG-SEDAYQAAKPLFLSMGKNTIYC 135 (273)
Q Consensus 79 ~~~~g~~~g~~~ldapv~G~~~~a~~---g~l~~~vgG-~~~~~~~~~~~l~~~~~~i~~~ 135 (273)
..+. ..++.++-+|-.-.+..+.. -.-.+++|| +++..++++.+++.+...++..
T Consensus 143 ~~~~--~~~~~~~~~PE~~~~G~a~~d~~~~~~iViG~~~~~~~~~~~~ly~~i~~~ii~~ 201 (202)
T d1mv8a2 143 GKKA--GVDFGVGTNPEFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPIIRK 201 (202)
T ss_dssp SCCB--TTTBEEEECCCCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTSSSCEEEE
T ss_pred cccc--cccccchhhhhhhcccchhhhhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEec
Confidence 0011 12467889996544333222 111367787 5678999999999998877653
|
| >d1i36a1 a.100.1.8 (A:153-264) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Conserved hypothetical protein MTH1747 domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.25 E-value=8.3e-07 Score=64.23 Aligned_cols=104 Identities=15% Similarity=0.174 Sum_probs=75.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCcccccccCCCCCCcccCCCCCCCCCCCcchhhH
Q 024066 139 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLM 218 (273)
Q Consensus 139 g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 218 (273)
|.|+.+||+...+.++..+++.|++..|+++|+..+ +++.+..+.+..|. ... ...+ .+. .-....+
T Consensus 1 G~ASalKM~rS~~~KG~~AL~~e~~~aA~~~Gv~~~-l~~~l~~s~~~~~~-~~~---~~~v-----~~~---~~ha~Rr 67 (112)
T d1i36a1 1 GDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEED-VLEMLEYTEGNDFR-ESA---ISRL-----KSS---CIHARRR 67 (112)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTSCSSTH-HHH---HHHH-----HHH---HHTHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHcCCccHH-HHH---HHHh-----cCC---cchhhHH
Confidence 789999999999999999999999999999999775 67788776433221 000 0000 000 0124467
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCC
Q 024066 219 AKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDS 256 (273)
Q Consensus 219 ~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~G~g~ 256 (273)
..+|+.+.++.++. +++.+.+++.++|++..+.+.+.
T Consensus 68 ~~EM~Eia~tl~~~-l~P~m~~a~a~~~~~~~d~~~~~ 104 (112)
T d1i36a1 68 YEEMKEVQDMLAEV-IDPVMPTCIIRIFDKLKDVKVSA 104 (112)
T ss_dssp HHHHHHHHHHHHTT-SCCSHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHHh-CCchHHHHHHHHHHHHHhcCCCh
Confidence 89999999999884 89899999999999987665443
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.85 E-value=4.2e-05 Score=58.22 Aligned_cols=104 Identities=19% Similarity=0.196 Sum_probs=67.1
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhchhhhccC
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKD 83 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~-ST~~P~~~~~l~~~~~~~g~~~~~g 83 (273)
.|+..+.|+.|++++||+||+||+ |+.+++|+.. + .++++||+. +++++++ +.+.+..
T Consensus 43 ~g~~~~~~~~~~~~~~dvIilavk-p~~~~~vl~~---l------~~~~~iis~~agi~~~~---l~~~l~~-------- 101 (152)
T d2ahra2 43 LALPYAMSHQDLIDQVDLVILGIK-PQLFETVLKP---L------HFKQPIISMAAGISLQR---LATFVGQ-------- 101 (152)
T ss_dssp HTCCBCSSHHHHHHTCSEEEECSC-GGGHHHHHTT---S------CCCSCEEECCTTCCHHH---HHHHHCT--------
T ss_pred cceeeechhhhhhhccceeeeecc-hHhHHHHhhh---c------ccceeEecccccccHHH---HHhhhcc--------
Confidence 488999999999999999999997 5677888742 2 234577755 4445544 4444432
Q ss_pred CCCCceEEEe-cCCCCHHHHhcCceEEEeec---CHHHHHHHHHHHHHhcCCeEEeC
Q 024066 84 SWENPVMLDA-PVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCG 136 (273)
Q Consensus 84 ~~~g~~~lda-pv~G~~~~a~~g~l~~~vgG---~~~~~~~~~~~l~~~~~~i~~~G 136 (273)
+..++-+ |- .|.....|. +.+.++ +++.++.++++|+.+|. ++++.
T Consensus 102 ---~~~ivr~mPN--~~~~v~~g~-~~~~~~~~~~~~~~~~v~~l~~~~G~-~~~v~ 151 (152)
T d2ahra2 102 ---DLPLLRIMPN--MNAQILQSS-TALTGNALVSQELQARVRDLTDSFGS-TFDIS 151 (152)
T ss_dssp ---TSCEEEEECC--GGGGGTCEE-EEEEECTTCCHHHHHHHHHHHHTTEE-EEECC
T ss_pred ---cccchhhccc--hhhhcCccc-eEEEeCCCCCHHHHHHHHHHHHhCCC-EEEec
Confidence 1334432 31 122223333 444444 47889999999999997 56553
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=97.80 E-value=5.4e-05 Score=58.35 Aligned_cols=107 Identities=12% Similarity=0.152 Sum_probs=73.6
Q ss_pred CCHHH-HHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCce
Q 024066 11 ETPFE-VAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPV 89 (273)
Q Consensus 11 ~s~~e-~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g~~ 89 (273)
++..+ ...++|+||+|+|. .++.+++.. +.+.. ..+.+|+|.+++.....+++.+.+..+ .
T Consensus 53 ~~~~~~~~~~~dlIila~p~-~~~~~vl~~---l~~~~--~~~~ii~d~~s~k~~~~~~~~~~~~~~------------~ 114 (171)
T d2g5ca2 53 TSIAKVEDFSPDFVMLSSPV-RTFREIAKK---LSYIL--SEDATVTDQGSVKGKLVYDLENILGKR------------F 114 (171)
T ss_dssp SCGGGGGGTCCSEEEECSCH-HHHHHHHHH---HHHHS--CTTCEEEECCSCCTHHHHHHHHHHGGG------------E
T ss_pred hhhhhhhccccccccccCCc-hhhhhhhhh---hhccc--cccccccccccccHHHHHHHHHhhccc------------c
Confidence 34333 33479999999995 466667753 44432 456899999999999988888766431 1
Q ss_pred EEEecCCC----CHHHHh----cCceEEEe---ecCHHHHHHHHHHHHHhcCCeEEe
Q 024066 90 MLDAPVSG----GVLAAE----AGTLTFMV---GGSEDAYQAAKPLFLSMGKNTIYC 135 (273)
Q Consensus 90 ~ldapv~G----~~~~a~----~g~l~~~v---gG~~~~~~~~~~~l~~~~~~i~~~ 135 (273)
...-|+.| |+..+. .|...+++ +.+++.+++++.+++.+|.++++|
T Consensus 115 i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~~~~~~~~~v~~~~~~lG~~v~~M 171 (171)
T d2g5ca2 115 VGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYM 171 (171)
T ss_dssp ECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCHHHHHHHHHHHHHTTCEEEEC
T ss_pred cccccccccccccHHHHHHHhhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEeC
Confidence 23456665 444443 24445555 447889999999999999988765
|
| >d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=97.60 E-value=5.9e-05 Score=63.64 Aligned_cols=103 Identities=18% Similarity=0.184 Sum_probs=68.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh---hcCCcccccccCCCCCCcccCCCCCCCCCCCcc
Q 024066 139 GNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKILN---SSSARCWSSDSYNPVPGVMEGVPASRNYGGGFA 214 (273)
Q Consensus 139 g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~-~Gl~~~~~~~~l~---~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~ 214 (273)
|+|+.+||++|.+.++.|++++|++.+.++ .|++.+++.+++. .+..+||+.+..... +. ..+-+...-
T Consensus 1 GsGH~vKMVHNgIEY~~mq~iaE~y~~l~~~~~~~~~~i~~vf~~w~~~~l~syLleit~~i---l~----~kd~~~~~~ 73 (297)
T d2pgda1 1 GAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITASI---LK----FQDADGKHL 73 (297)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHH---HH----CBCTTSSBS
T ss_pred CCchhhhhhccHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhCCCccHHHHHHHHHH---Hh----ccCCCcCcc
Confidence 799999999999999999999999999987 5999988877765 455566655422110 00 000000000
Q ss_pred hhhH------HHHHHHHHHHHHHhCCCChHHHHHH-HHHHH
Q 024066 215 SKLM------AKDLNLALASAKEVGVDCPLTSQAQ-DIYAK 248 (273)
Q Consensus 215 ~~~~------~KD~~~~~~~a~~~g~~~~~~~~~~-~~~~~ 248 (273)
++.. ----+..+..|-+.|+|+|++..+. .++.+
T Consensus 74 ld~I~d~a~~kGTG~Wt~~~Al~lgvp~p~I~~Av~aR~~S 114 (297)
T d2pgda1 74 LPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLS 114 (297)
T ss_dssp GGGSCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred hhhhhccccCCCchHHHHHHHHHcCCCchHHHHHHhhHhhc
Confidence 1110 1124667888999999999999886 44443
|
| >d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.55 E-value=0.0001 Score=62.31 Aligned_cols=106 Identities=14% Similarity=0.120 Sum_probs=68.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh---c-CCcccccccCCCCCCcccCCCCCCCCCCC--
Q 024066 139 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNS---S-SARCWSSDSYNPVPGVMEGVPASRNYGGG-- 212 (273)
Q Consensus 139 g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl~~~~~~~~l~~---~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-- 212 (273)
|+|+.+||++|.+.++.|++++|++.+.+..|.+.+++.+++.. + ...||+.+....+ +...-.+++|--.
T Consensus 1 GsGH~vKmvHNgIEy~~mq~iaE~~~~l~~~~~~~~~i~~~f~~w~~~~~l~syL~eit~~i---l~~~d~~g~~l~d~I 77 (300)
T d1pgja1 1 GAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVLEDWKSKNFLKSYMLDISIAA---ARAKDKDGSYLTEHV 77 (300)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSTTCBHHHHHHHHH---HHCBCTTSSBGGGGB
T ss_pred CCccchhhhcchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCeehHHHHHHHHHH---HhhcCCCCchhHHHh
Confidence 79999999999999999999999999999999999887777654 2 3466654322111 1000001111000
Q ss_pred cchhhHHHHHHHHHHHHHHhCCCChHHHHHH-HHHH
Q 024066 213 FASKLMAKDLNLALASAKEVGVDCPLTSQAQ-DIYA 247 (273)
Q Consensus 213 f~~~~~~KD~~~~~~~a~~~g~~~~~~~~~~-~~~~ 247 (273)
-.....-..-+.....|-+.|+|+|.+..+. .++.
T Consensus 78 ~d~a~~kGTG~Wt~~~al~~gvp~p~i~~Av~aR~~ 113 (300)
T d1pgja1 78 MDRIGSKGTGLWSAQEALEIGVPAPSLNMAVVSRQF 113 (300)
T ss_dssp CCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred cccccCCchHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence 0000112234567788889999999998876 4433
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=96.98 E-value=0.00057 Score=51.53 Aligned_cols=106 Identities=16% Similarity=0.155 Sum_probs=65.7
Q ss_pred CCCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCC
Q 024066 5 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 84 (273)
Q Consensus 5 ~Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~ 84 (273)
.|++..++..+ +.+||+||+|++ |.++.+++.. +. ..++++|.+.+..+ ...+.+.+..
T Consensus 44 ~~~~~~~~~~~-v~~~Div~lavk-P~~~~~v~~~---l~-----~~~~~viS~~ag~~--~~~l~~~l~~--------- 102 (152)
T d1yqga2 44 LGVETSATLPE-LHSDDVLILAVK-PQDMEAACKN---IR-----TNGALVLSVAAGLS--VGTLSRYLGG--------- 102 (152)
T ss_dssp TCCEEESSCCC-CCTTSEEEECSC-HHHHHHHHTT---CC-----CTTCEEEECCTTCC--HHHHHHHTTS---------
T ss_pred ccccccccccc-ccccceEEEecC-HHHHHHhHHH---Hh-----hcccEEeecccCCC--HHHHHHHhCc---------
Confidence 46777777665 567999999998 6788988854 43 23467776544433 2345555531
Q ss_pred CCCceEEEecCCCCHHHHhcCceEEEeec--CHHHHHHHHHHHHHhcCCeEEe
Q 024066 85 WENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKPLFLSMGKNTIYC 135 (273)
Q Consensus 85 ~~g~~~ldapv~G~~~~a~~g~l~~~vgG--~~~~~~~~~~~l~~~~~~i~~~ 135 (273)
...+-..+...|.....|...+..+. +++.++.++++|+.+|. ++++
T Consensus 103 ---~~~iir~mpn~p~~~~~g~t~~~~~~~~~~~~~~~v~~l~~~~G~-~~~v 151 (152)
T d1yqga2 103 ---TRRIVRVMPNTPGKIGLGVSGMYAEAEVSETDRRIADRIMKSVGL-TVWL 151 (152)
T ss_dssp ---CCCEEEEECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHHHTTEE-EEEC
T ss_pred ---CcceEeecccchhHhcCCcEEEEeCCCCCHHHHHHHHHHHHhCCC-EEEe
Confidence 11233334444555555553344433 36788999999999997 4443
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.32 E-value=0.0096 Score=46.20 Aligned_cols=93 Identities=16% Similarity=0.068 Sum_probs=58.4
Q ss_pred CCCHHHHHhcCCEEEEeCCChHH----------HHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhh
Q 024066 10 KETPFEVAEASDVVITMLPSSSH----------VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILK 79 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~a----------v~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~ 79 (273)
..+..+...++|++++|+|++.. ++++.. .+... .++.++|-.||+.|.+++++.+.+..
T Consensus 64 ~~~~~~~~~~~~ii~v~vpt~~~~~~~~~~~~~v~~~~~---~~~~~---~~~~~iii~Stv~pgt~~~~~~~~~~---- 133 (196)
T d1dlja2 64 TLDSKAAYKEAELVIIATPTNYNSRINYFDTQHVETVIK---EVLSV---NSHATLIIKSTIPIGFITEMRQKFQT---- 133 (196)
T ss_dssp ESCHHHHHHHCSEEEECCCCCEETTTTEECCHHHHHHHH---HHHHH---CSSCEEEECSCCCTTHHHHHHHHTTC----
T ss_pred cchhhhhhhccccccccCCccccccCCCcceeEEeehhh---hhhhc---ccceeEEeeeecCceeeeeeeeccch----
Confidence 34566778899999999999853 122221 12221 24578999999999999999887653
Q ss_pred hccCCCCCceEEEecCCCCHHHHhcC---ceEEEeecCHHHHHH
Q 024066 80 EKKDSWENPVMLDAPVSGGVLAAEAG---TLTFMVGGSEDAYQA 120 (273)
Q Consensus 80 ~~~g~~~g~~~ldapv~G~~~~a~~g---~l~~~vgG~~~~~~~ 120 (273)
.+++-+|-.=.+..+... .-.+++|++++..++
T Consensus 134 --------~~~~~~PE~i~~G~ai~d~~~p~riv~G~~~~~~~~ 169 (196)
T d1dlja2 134 --------DRIIFSPEFLRESKALYDNLYPSRIIVSCEENDSPK 169 (196)
T ss_dssp --------SCEEECCCCCCTTSTTHHHHSCSCEEEECCTTSCHH
T ss_pred --------hhhccchhhcchhhhHhhccCCCEEEEeCCHhhHHH
Confidence 356678865443333221 114677776554333
|
| >d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=94.24 E-value=0.065 Score=44.39 Aligned_cols=110 Identities=11% Similarity=0.135 Sum_probs=76.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhhcC-CcccccccCCCCCCcccCCCCCCC--C
Q 024066 139 GNGAAAKICNNLTMAVSMLGVSEALTLGQS------LGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVPASRN--Y 209 (273)
Q Consensus 139 g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~------~Gl~~~~~~~~l~~~~-~~s~~~~~~~~~~~~~~~~~~~~~--~ 209 (273)
.....+|.+.|.+..+.+..++|++.+-++ .+++..++..+.+.++ -+|++++...+ .+.+.....+ +
T Consensus 138 ~~~~~i~~l~~al~~~~i~syaQGf~ll~~as~~~~w~ldl~~ia~iW~~GcIIrS~LL~~i~~---a~~~~~~l~nl~~ 214 (297)
T d2pgda1 138 DKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKD---AFDRNPGLQNLLL 214 (297)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSSSTTCBTHHHHHHH---HHHHCTTCSCGGG
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcCccHHHHHHHHcCCCeeeHHHHHHHHH---HHHhCCCccchhh
Confidence 467789999999999999999999999875 4789999999998775 55655442211 0100000000 1
Q ss_pred CCCc--chhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 024066 210 GGGF--ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCE 251 (273)
Q Consensus 210 ~~~f--~~~~~~KD~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~ 251 (273)
++.| .+....++++.++..+-+.|+|+|.+..++..|..-..
T Consensus 215 ~~~~~~~l~~~~~~~r~~v~~ai~~gip~P~lssaL~y~~~~~~ 258 (297)
T d2pgda1 215 DDFFKSAVENCQDSWRRAISTGVQAGIPMPCFTTALSFYDGYRH 258 (297)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHhhccHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcc
Confidence 1112 24445667788999999999999999999987765443
|
| >d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Trypanosoma brucei [TaxId: 5691]
Probab=92.96 E-value=0.13 Score=42.65 Aligned_cols=113 Identities=9% Similarity=0.121 Sum_probs=71.5
Q ss_pred CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhhcC-CcccccccCCCCCCcccCCCCCCC
Q 024066 136 GGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS------LGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVPASRN 208 (273)
Q Consensus 136 G~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~------~Gl~~~~~~~~l~~~~-~~s~~~~~~~~~~~~~~~~~~~~~ 208 (273)
.....+.-+|.+.|.+..+.+..++|++.+-++ .++|..++..+.+.++ -+|++++...+ .+.+.....+
T Consensus 140 ~~~~~~~~i~~l~~Al~~~~i~syaQGf~LL~~as~~~~w~ldl~~Ia~iWr~GCIIRS~LL~~i~~---a~~~~~~l~~ 216 (300)
T d1pgja1 140 NKSPSGPEIKQLYDSVCIAIISCYAQMFQCLREMDKVHNFGLNLPATIATFRAGCILQGYLLKPMTE---AFEKNPNISN 216 (300)
T ss_dssp CCSTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHTTSSSSTTCBTTHHHHHH---HHHHCTTCSC
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccchHHHHHhcCCceeeHHHHHHHHH---HhhcCCccch
Confidence 446778899999999999999999999999976 4789999999988765 45554332110 0000000000
Q ss_pred CCCCcc--hhhHHHHH-HHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 024066 209 YGGGFA--SKLMAKDL-NLALASAKEVGVDCPLTSQAQDIYAKLCE 251 (273)
Q Consensus 209 ~~~~f~--~~~~~KD~-~~~~~~a~~~g~~~~~~~~~~~~~~~a~~ 251 (273)
....|. +....+.. +.+...+.+.|+|+|.+.+++..|.....
T Consensus 217 l~~~f~~~~~~~~~~~~r~v~~~~~~~gip~P~lssaL~y~~~~~~ 262 (300)
T d1pgja1 217 LMCAFQTEIRAGLQNYRDMVALITSKLEVSIPVLSASLNYVTAMFT 262 (300)
T ss_dssp TTGGGHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Confidence 011121 11112233 33444566789999999999998765533
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=91.48 E-value=0.035 Score=42.64 Aligned_cols=65 Identities=8% Similarity=0.054 Sum_probs=49.5
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
.+..++..|++++||+|++++|-.+..+.++.. ..+..+ +++.++||+|-..--.-..+.+.+.+
T Consensus 80 ~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~--~~l~~m--k~~ailIN~~RG~ivd~~aL~~aL~~ 144 (181)
T d1qp8a1 80 WRFTNSLEEALREARAAVCALPLNKHTRGLVKY--QHLALM--AEDAVFVNVGRAEVLDRDGVLRILKE 144 (181)
T ss_dssp SCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCH--HHHTTS--CTTCEEEECSCGGGBCHHHHHHHHHH
T ss_pred eeeeechhhhhhccchhhccccccccccccccc--ceeeec--cccceEEeccccccccchhhhhhccc
Confidence 445678999999999999999998887776643 355554 56789999996666555667777765
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=88.39 E-value=0.25 Score=36.81 Aligned_cols=61 Identities=11% Similarity=0.087 Sum_probs=40.6
Q ss_pred CCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 8 PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 8 ~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
....++.|+++++|+||+|+|.. .+++++.. +.+++ .++++|+..++.... ..++.+.+..
T Consensus 61 ~~~~~~~e~~~~aD~iii~v~~~-~~~~~~~~---i~~~l--~~~~~iv~~~g~~~~-~~~~~~~~~~ 121 (184)
T d1bg6a2 61 LLTSDIGLAVKDADVILIVVPAI-HHASIAAN---IASYI--SEGQLIILNPGATGG-ALEFRKILRE 121 (184)
T ss_dssp EEESCHHHHHTTCSEEEECSCGG-GHHHHHHH---HGGGC--CTTCEEEESSCCSSH-HHHHHHHHHH
T ss_pred hhhhhhHhHhcCCCEEEEEEchh-HHHHHHHH---hhhcc--CCCCEEEEeCCCCcc-HHHHHHHHHH
Confidence 34568899999999999999987 45677653 44443 345677766555444 3455555544
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=88.22 E-value=0.88 Score=33.27 Aligned_cols=62 Identities=16% Similarity=0.223 Sum_probs=46.9
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhh
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSN 75 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~-ST~~P~~~~~l~~~~~~ 75 (273)
|+...++..++.++.|+|++|+|++...+-+.. ++.. +-.++++- -+.++++.+++.+.+.+
T Consensus 48 ~~~~~~~~~~l~~~~D~V~I~tp~~~h~~~~~~----al~~----gk~V~~EKPla~~~~e~~~l~~~a~~ 110 (164)
T d1tlta1 48 RIPYADSLSSLAASCDAVFVHSSTASHFDVVST----LLNA----GVHVCVDKPLAENLRDAERLVELAAR 110 (164)
T ss_dssp TCCBCSSHHHHHTTCSEEEECSCTTHHHHHHHH----HHHT----TCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhcccccccccchhccccccc----cccc----cceeeccccccCCHHHHHHHHHHHHH
Confidence 667788999999999999999999877665542 3332 33688876 56778999999887765
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=87.90 E-value=0.088 Score=40.72 Aligned_cols=66 Identities=14% Similarity=0.103 Sum_probs=51.3
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
|.....+..|++++||+|++++|-.+..+.++.. ..++.+ +++.++||+|-...=.-..+.+.+.+
T Consensus 91 ~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~--~~l~~m--k~~a~lIN~sRG~ivde~aL~~aL~~ 156 (193)
T d1mx3a1 91 GLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLIND--FTVKQM--RQGAFLVNTARGGLVDEKALAQALKE 156 (193)
T ss_dssp TCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSH--HHHTTS--CTTEEEEECSCTTSBCHHHHHHHHHH
T ss_pred ccccccchhhccccCCEEEEeecccccchhhhhH--HHHhcc--CCCCeEEecCCceEEcHHHHHHHHHc
Confidence 5566789999999999999999988777665532 344544 56799999999887777778888865
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=87.78 E-value=0.085 Score=40.50 Aligned_cols=66 Identities=14% Similarity=0.094 Sum_probs=52.3
Q ss_pred CCCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 6 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 6 Ga~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
+.....+..|+.++||+|++++|-.+..+.++.. ..++.+ +++.++||+|-...=.-..+.+.+.+
T Consensus 87 ~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~--~~l~~m--k~ga~lIN~aRG~ivd~~aL~~aL~~ 152 (188)
T d2naca1 87 NLTWHATREDMYPVCDVVTLNCPLHPETEHMIND--ETLKLF--KRGAYIVNTARGKLCDRDAVARALES 152 (188)
T ss_dssp TCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSH--HHHTTS--CTTEEEEECSCGGGBCHHHHHHHHHT
T ss_pred cccccCCHHHHHHhccchhhcccccccchhhhHH--HHHHhC--CCCCEEEecCchhhhhHHHHHHHHhC
Confidence 4566788999999999999999999887776643 355554 57789999998887777778888875
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.82 E-value=0.13 Score=39.37 Aligned_cols=62 Identities=8% Similarity=0.123 Sum_probs=49.4
Q ss_pred CCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 10 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 10 ~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
..+..|++++||+|++++|-.+..+.++.. ..++.+ +++.++||.|=..-=.-..+.+.+.+
T Consensus 89 ~~~l~ell~~sDiv~~~~Plt~~T~~lin~--~~l~~m--k~~a~lIN~sRG~iVde~aL~~aL~~ 150 (184)
T d1ygya1 89 LLSLDDLLARADFISVHLPKTPETAGLIDK--EALAKT--KPGVIIVNAARGGLVDEAALADAITG 150 (184)
T ss_dssp ECCHHHHHHHCSEEEECCCCSTTTTTCBCH--HHHTTS--CTTEEEEECSCTTSBCHHHHHHHHHT
T ss_pred eccHHHHHhhCCEEEEcCCCCchhhhhhhH--HHHhhh--CCCceEEEecchhhhhhHHHHHHHhc
Confidence 357889999999999999998888776642 355554 56789999998888777788888875
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=85.52 E-value=0.13 Score=39.51 Aligned_cols=65 Identities=11% Similarity=0.114 Sum_probs=51.5
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
....++..++.+.||+|++++|-.+..+.++.. ..++.+ +++.++||.|=...=.-..+.+.+.+
T Consensus 91 ~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~--~~l~~m--k~~a~lIN~sRG~ivde~aL~~aL~~ 155 (191)
T d1gdha1 91 ATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNK--ATIKSL--PQGAIVVNTARGDLVDNELVVAALEA 155 (191)
T ss_dssp CEECSSHHHHHHHCSEEEECCCCCTTTTTCBSH--HHHTTS--CTTEEEEECSCGGGBCHHHHHHHHHH
T ss_pred ccccCCHHHHHhhCCeEEecCCCCchHhheecH--HHhhCc--CCccEEEecCCccchhhHHHHHHHHc
Confidence 445678999999999999999998887766642 355554 56799999998888777788888875
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=84.73 E-value=0.088 Score=40.49 Aligned_cols=113 Identities=9% Similarity=0.121 Sum_probs=57.7
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcc-cCCCCCCCeEEEEcCC-CCHHHHHHHHHHHhhchhhhccCC
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLL-QGGNSVRPQLLIDSST-IDPQTSRNISAAVSNCILKEKKDS 84 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l-~~~~~~~g~iiid~ST-~~P~~~~~l~~~~~~~g~~~~~g~ 84 (273)
..+..++.++++++|+||++||.. .+++++....... +.. ......+|.+|- ..+++.+.+.+.+.+. +...
T Consensus 65 i~~t~~l~~a~~~ad~iiiavPs~-~~~~~~~~~~~~~~~~~-~~~~~~ii~~tKGie~~t~~~~seii~e~-~~~~--- 138 (189)
T d1n1ea2 65 ITFTSDVEKAYNGAEIILFVIPTQ-FLRGFFEKSGGNLIAYA-KEKQVPVLVCTKGIERSTLKFPAEIIGEF-LPSP--- 138 (189)
T ss_dssp EEEESCHHHHHTTCSCEEECSCHH-HHHHHHHHHCHHHHHHH-HHHTCCEEECCCSCCTTTCCCHHHHHTTT-SCGG---
T ss_pred cccchhhhhccCCCCEEEEcCcHH-HHHHHHHHHHhhhhhhh-ccCCcEEEEEECCCccCCccchhhHHHHH-hccc---
Confidence 456778899999999999999964 6666654311100 000 012233444432 2345555555555442 0001
Q ss_pred CCCceEEEecCCCCHHHHhcCceEEEeecCHHHHHHHHHHHHH
Q 024066 85 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLS 127 (273)
Q Consensus 85 ~~g~~~ldapv~G~~~~a~~g~l~~~vgG~~~~~~~~~~~l~~ 127 (273)
.+.++-+|-+-..-..+.-+..++.|-+.+..++++.+|..
T Consensus 139 --~~~vlsGP~~A~Ev~~~~pt~~viAs~~~~~a~~i~~lfst 179 (189)
T d1n1ea2 139 --LLSVLAGPSFAIEVATGVFTCVSIASADINVARRLQRIMST 179 (189)
T ss_dssp --GEEEEESSCCHHHHHTTCCEEEEEECSSHHHHHHHHHHHSC
T ss_pred --ceEEEecCCcHHHHHcCCCcEEEEEeCCHHHHHHHHHHhCC
Confidence 13344444332222222223334444466777788888764
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=84.70 E-value=0.32 Score=36.65 Aligned_cols=31 Identities=23% Similarity=0.153 Sum_probs=25.2
Q ss_pred CCCCCHHHHHhcCCEEEEeCCChHHHHHHHcC
Q 024066 8 PTKETPFEVAEASDVVITMLPSSSHVLDVYNG 39 (273)
Q Consensus 8 ~~~~s~~e~~~~advvi~~v~~~~av~~v~~~ 39 (273)
...++..++++++|+||++||. ..+++++..
T Consensus 60 ~~~~~~~~~~~~ad~Ii~avps-~~~~~~~~~ 90 (180)
T d1txga2 60 FWPEQLEKCLENAEVVLLGVST-DGVLPVMSR 90 (180)
T ss_dssp ECGGGHHHHHTTCSEEEECSCG-GGHHHHHHH
T ss_pred cccccHHHHHhccchhhcccch-hhhHHHHHh
Confidence 3456788999999999999996 577888764
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=83.22 E-value=0.18 Score=38.58 Aligned_cols=65 Identities=15% Similarity=0.126 Sum_probs=50.9
Q ss_pred CCCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 7 VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 7 a~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
.....+..|+++.||+|++++|-.+..+.++.. ..++.+ +++.++||+|-..-=.-..+.+.+.+
T Consensus 84 ~~~~~~l~ell~~sDii~i~~plt~~T~~li~~--~~l~~m--k~~a~lIN~aRG~lvde~aL~~aL~~ 148 (188)
T d1sc6a1 84 ATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGA--KEISLM--KPGSLLINASRGTVVDIPALADALAS 148 (188)
T ss_dssp CEECSCHHHHHHHCSEEEECCCSSTTTTTCBCH--HHHHHS--CTTEEEEECSCSSSBCHHHHHHHHHT
T ss_pred hhhhhhHHHHHhhccceeecccCCcchhhhccH--HHHhhC--CCCCEEEEcCcHHhhhhHHHHHHHHc
Confidence 344568999999999999999988777766543 355554 56799999998888777788888865
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.72 E-value=2 Score=32.44 Aligned_cols=110 Identities=17% Similarity=0.246 Sum_probs=64.2
Q ss_pred CCCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCC
Q 024066 8 PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWEN 87 (273)
Q Consensus 8 ~~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~~g~~~~~g~~~g 87 (273)
....+..+++.+||+||=|++.+-.++.-++. .+-+. .+++ +|+=++|++...+ ++++.+.. ....-|
T Consensus 78 ~~~~d~~~a~~~ad~ViEav~E~l~~K~~v~~--~l~~~--~~~~-~ilasnTS~l~i~-~la~~~~~------p~r~ig 145 (192)
T d1f0ya2 78 ATSTDAASVVHSTDLVVEAIVENLKVKNELFK--RLDKF--AAEH-TIFASNTSSLQIT-SIANATTR------QDRFAG 145 (192)
T ss_dssp EEESCHHHHTTSCSEEEECCCSCHHHHHHHHH--HHTTT--SCTT-CEEEECCSSSCHH-HHHTTSSC------GGGEEE
T ss_pred cccchhHhhhcccceehhhcccchhHHHHHHH--HHhhh--cccC-ceeeccCcccccc-hhhhhccC------HhHEEe
Confidence 34667788999999999999999888754443 23322 1333 4443333333322 34443321 110002
Q ss_pred ceEEEecCCCCHHHHhcCceEEEeec---CHHHHHHHHHHHHHhcCCeEEeCC
Q 024066 88 PVMLDAPVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG 137 (273)
Q Consensus 88 ~~~ldapv~G~~~~a~~g~l~~~vgG---~~~~~~~~~~~l~~~~~~i~~~G~ 137 (273)
.||. .|+.- -.+.=++.| ++++++++..+++.+|+..+.+.+
T Consensus 146 ~Hff-nP~~~-------~~lVEIv~g~~T~~~~i~~~~~~~~~lgk~pV~v~D 190 (192)
T d1f0ya2 146 LHFF-NPVPV-------MKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKD 190 (192)
T ss_dssp EEEC-SSTTT-------CCEEEEECCTTCCHHHHHHHHHHHHHTTCEEEEECS
T ss_pred eccc-cccCc-------ccEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEeec
Confidence 3443 22211 134545555 468999999999999998887754
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=80.97 E-value=0.25 Score=38.16 Aligned_cols=63 Identities=8% Similarity=0.099 Sum_probs=47.6
Q ss_pred CCCCHHHHHhcCCEEEEeCCChHHHHHHHcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 024066 9 TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 75 (273)
Q Consensus 9 ~~~s~~e~~~~advvi~~v~~~~av~~v~~~~~g~l~~~~~~~g~iiid~ST~~P~~~~~l~~~~~~ 75 (273)
...+..|+.++||+|++++|-.+..+.++.. ..++.+ +++.++||.|=...=.-..+.+.+.+
T Consensus 86 ~~~~l~~~l~~sDii~~~~plt~~T~~li~~--~~l~~m--k~~a~lIN~sRG~ivde~aL~~aL~~ 148 (197)
T d1j4aa1 86 YVDSLDDLYKQADVISLHVPDVPANVHMIND--ESIAKM--KQDVVIVNVSRGPLVDTDAVIRGLDS 148 (197)
T ss_dssp BCSCHHHHHHHCSEEEECSCCCGGGTTCBSH--HHHHHS--CTTEEEEECSCGGGBCHHHHHHHHHH
T ss_pred eeccccccccccccccccCCccccccccccH--HHHhhh--CCccEEEecCchhhhhhHHHHHHHhc
Confidence 3568999999999999999988777665532 244443 56799999988777666677777765
|