Citrus Sinensis ID: 024067

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270---
Protein Sequence
MAGLSRLRAAAALQLRQIARSRAYGSAAAAQLQYDYDEECDLHGQASEPMLRLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHMNAVSSSQKLTA
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHccccccHHHccccccccccccccccccccccccEEEEEccccccccHHHHHHHHHcccccccccHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHcccccEEEEEEccHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHcccEEEEEccccHHHHHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccccccccccEEEEEcccccccccHHHHHHHHccccccccHHHHHHHHHcccHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHccEEEEcccccHHHHHHHHccccccEEEEEEccHHHHHHHHccccccccccccccccccEccccccHHHHHHHHHHHHHHcHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MAGLSRLRAAAALQLRQIARSRAYGSAAAAQLQydydeecdlhgqasepmlrldsagspprrgvqwvligdpgvkkhvYADNLskllevphismgslvrqelsprSALYKQIANAVNEGKLVPEDVIFALLSKRLEegyyrgesgfildgiprtRIQAEILDQIVDVDLVINFKSIEDQLVKRnleseafsphKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHMNavsssqklta
Flexible Loop (DISEMBL)
MAGLSRLRAAAALQLRQIARSRAYGSAAAAQLQYDYDEECDLHGQASEPMLRLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANavnegklvpeDVIFALLSKRLEegyyrgesgfildgipRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHMnavsssqklta
Low Complexity Region (SEG)
MAGlsrlraaaalqlrqiarsraygsaaaaQLQYDYDEECDLHGQASEPMLRLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGarfsaadaasaWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHMNAVSSSQKLTA
Disordered region (IsUnstruct)
*************QLRQIARSRAYGSAAAAQLQYDYDEEC**********************GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQH************
Disordered Region (DISOPRED)
*********A************************DYDEE**************************WVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL**************
Disordered Region (DISEMBL)
MAGLSRLRAAAALQLRQIARSRAYGSAAAAQLQYDYDEECDLHGQASEPMLRLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHMN**********
Disordered Region (DISPRO)
****SRLRAA**LQLRQIARSRAYGSAAAAQLQYDYDEECDLHGQASEPMLRLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHMNAV**S*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGLSRLRAAAALQLRQIARSRAYGSAAAAQLQYDYDEECDLHGQASEPMLRLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHMNAVSSSQKLTA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	273	2.2.26 [Sep-21-2011]
Q9ZUU1	284	Probable adenylate kinase	no	no	0.783	0.753	0.407	1e-40
Q8HSW1	288	Adenylate kinase, chlorop	N/A	no	0.743	0.704	0.414	7e-40
Q73NP0	209	Adenylate kinase OS=Trepo	yes	no	0.659	0.861	0.324	8e-21
B7IHW7	214	Adenylate kinase OS=Therm	yes	no	0.652	0.831	0.316	2e-19
B1VEX6	181	Adenylate kinase OS=Coryn	yes	no	0.637	0.961	0.331	2e-19
P43414	217	Adenylate kinase OS=Strep	yes	no	0.703	0.884	0.306	8e-19
B4LP08	240	Adenylate kinase 2, mitoc	N/A	no	0.666	0.758	0.326	2e-18
B4KLY1	240	Adenylate kinase 2, mitoc	N/A	no	0.666	0.758	0.322	4e-18
B3MCQ5	240	Adenylate kinase 2, mitoc	N/A	no	0.666	0.758	0.322	4e-18
B0X5E3	241	Adenylate kinase 2, mitoc	N/A	no	0.652	0.738	0.328	5e-18

>sp|Q9ZUU1|KADC1_ARATH Probable adenylate kinase 1, chloroplastic OS=Arabidopsis thaliana GN=At2g37250 PE=2 SV=1

 Score =  166 bits (421), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 101/248 (40%), Positives = 130/248 (52%), Gaps = 34/248 (13%)

Query: 43  HGQASEPMLRLDSAG--SPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQ 100
           H  +  P L    A   +P  R VQWV +G PGV K  YA  LS LL VPHI+ G LVR+
Sbjct: 29  HASSPSPFLHGGGASRVAPKDRNVQWVFLGCPGVGKGTYASRLSTLLGVPHIATGDLVRE 88

Query: 101 ELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEI 160
           EL+    L ++++  VN+GKLV +++I  LLSKRLE G  RGESGFILDG PRT  QAEI
Sbjct: 89  ELASSGPLSQKLSEIVNQGKLVSDEIIVDLLSKRLEAGEARGESGFILDGFPRTMRQAEI 148

Query: 161 LDQIVDVDLVINFKSIEDQLVKR-------------------NLESEA----------FS 191
           L  + D+DLV+N K  E+ LV +                   NL+ E             
Sbjct: 149 LGDVTDIDLVVNLKLPEEVLVDKCLGRRTCSQCGKGFNVAHINLKGENGRPGISMDPLLP 208

Query: 192 PHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQ 251
           PH+   +L      A D     K + RIY E  + LE+YY  + KL+ F +     E+W 
Sbjct: 209 PHQCMSKL---VTRADDTEEVVKARLRIYNETSQPLEEYYRTKGKLMEFDLPGGIPESWP 265

Query: 252 GLLSALHL 259
            LL AL L
Sbjct: 266 RLLEALRL 273

This small ubiquitous enzyme is essential for maintenance and cell growth.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 4EC: .EC: 3

>sp|Q8HSW1|KADC_SOLTU Adenylate kinase, chloroplastic OS=Solanum tuberosum GN=ADK PE=2 SV=1

 Score =  164 bits (415), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 95/229 (41%), Positives = 123/229 (53%), Gaps = 26/229 (11%)

Query: 59  PPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE 118
           P  + VQWV +G PGV K  YA  LS LL VPHI+ G LVR EL     L KQ+A  VN+
Sbjct: 51  PKAKTVQWVFLGCPGVGKGTYASRLSTLLGVPHIATGDLVRDELKSSGPLSKQLAEIVNQ 110

Query: 119 GKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIED 178
           GKLV +++I  LLSKRLE G  +GE+GFILDG PRT  QAEIL ++ D+DLV+N K  E 
Sbjct: 111 GKLVSDEIILNLLSKRLESGEAKGEAGFILDGFPRTVRQAEILTEVTDIDLVVNLKLPER 170

Query: 179 QLVKRNLESEAFSPHKEFLRL---------GGARFSAA-----------------DAASA 212
            LV++ L     S   +   +         G  R S A                 D  + 
Sbjct: 171 VLVEKCLGRRICSECGKNFNVASIDVAGENGAPRISMARLNPPFTVCFKLITRADDTEAI 230

Query: 213 WKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQH 261
            KE+  IY ++ + +ED+Y  Q KLL F +     E+W  LL  L+L  
Sbjct: 231 VKERLSIYWDKSQPVEDFYRSQGKLLEFDLPGGIPESWPKLLEVLNLDE 279

This small ubiquitous enzyme is essential for maintenance and cell growth.

Solanum tuberosum (taxid: 4113)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|Q73NP0|KAD_TREDE Adenylate kinase OS=Treponema denticola (strain ATCC 35405 / CIP 103919 / DSM 14222) GN=adk PE=3 SV=1

 Score =  100 bits (250), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 98/197 (49%), Gaps = 17/197 (8%)

Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           +  + +G PG  K   A  +SK  ++PHIS G L R  +  ++ L K++   ++ G LV 
Sbjct: 1   MNCIFLGPPGAGKGTLAFEVSKSYKIPHISTGDLFRAAIKEQTDLGKKVKAVIDSGALVS 60

Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVK- 182
           +D+  AL+ +RLE    +   GFILDG PRT  QA+ L+ IV +D VINF   +D+++K 
Sbjct: 61  DDLTIALVKERLERDDTK--KGFILDGFPRTIAQADALEDIVKIDSVINFDISDDEVIKR 118

Query: 183 ----RNLESEAFSPHKEFLR----------LGGARFSAADAASAWKEKFRIYAEQGKSLE 228
               R   S   S H EF++           G       D   A +++   Y  Q   L 
Sbjct: 119 LSGRRVCSSCGQSFHIEFVKPKKEGICDSCSGDLMIRPDDKIEAIQKRLETYRNQTAPLI 178

Query: 229 DYYSKQRKLLNFQVAAA 245
           DYY+K+  ++N     A
Sbjct: 179 DYYTKKDLIVNIDARPA 195

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.

Treponema denticola (strain ATCC 35405 / CIP 103919 / DSM 14222) (taxid: 243275)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|B7IHW7|KAD_THEAB Adenylate kinase OS=Thermosipho africanus (strain TCF52B) GN=adk PE=3 SV=1

 Score = 96.7 bits (239), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 102/202 (50%), Gaps = 24/202 (11%)

Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           +  V +G PG  K  YA  L ++L +PHIS G + R+ ++ +S L K++   +  G LVP
Sbjct: 1   MNMVFLGPPGAGKGTYAKRLIEMLNIPHISTGDMFREAVASKSELGKKVEEILKRGDLVP 60

Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIV-----DVDLVINFKSIED 178
           +D+  +++  RL +     ++GFILDG PRT  QA+ LD+I+     D+D VI F+  E+
Sbjct: 61  DDLTNSIVKDRLSKE--DCKNGFILDGFPRTVAQAKALDEIMRSLGKDLDYVIYFEVDEE 118

Query: 179 QLVKRNLESEAFSPHKEFLRL--------------GGARFS-AADAASAWKEKFRIYAEQ 223
           ++VKR       S   +   L              GG  +    D     ++++R+Y E 
Sbjct: 119 EVVKRISNRRICSNCGKIYNLITLPPKVDGKCDVCGGTLYQREDDKEEVVRKRYRVYMEN 178

Query: 224 GKSLEDYYSKQRKLLNFQVAAA 245
              + +YY K  KL  F V  A
Sbjct: 179 TYPVIEYYQKSNKL--FTVNGA 198

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.

Thermosipho africanus (strain TCF52B) (taxid: 484019)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|B1VEX6|KAD_CORU7 Adenylate kinase OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=adk PE=3 SV=1

 Score = 96.3 bits (238), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/199 (33%), Positives = 101/199 (50%), Gaps = 25/199 (12%)

Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           ++ VL+G PG  K   A  LS  L +PHIS G L R  +S  + L KQ    ++ GKLVP
Sbjct: 1   MRLVLLGPPGAGKGTQAQLLSDALNIPHISTGDLFRANISQGTELGKQAQEYMDAGKLVP 60

Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIED 178
            +V   ++  RLEE      +GF+LDG PRT  QA++L+++     + +D VIN++  ED
Sbjct: 61  TEVTANMVRARLEEA--DAANGFLLDGFPRTIEQADLLEEMLKEKDLKLDAVINYQVSED 118

Query: 179 QLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLL 238
            +V+R L                +R    D  S  + + ++Y E+   L DYY  Q ++L
Sbjct: 119 VVVERML----------------SRGRNDDNESTIRTRLQVYREETAPLIDYY--QGRIL 160

Query: 239 NFQVAAAPGETWQGLLSAL 257
           N     +  +  +  L AL
Sbjct: 161 NIDAEGSVEDISEATLCAL 179

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.

Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) (taxid: 504474)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|P43414|KAD_STRCO Adenylate kinase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=adk PE=3 SV=3

 Score = 94.4 bits (233), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 105/215 (48%), Gaps = 23/215 (10%)

Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           ++ VL+G PG  K   A  L++ L +PHIS G L R  +S ++ L K   + +N G LVP
Sbjct: 1   MRIVLVGPPGAGKGTQATRLAETLHIPHISTGDLFRANISQQTELGKLAKSYMNAGNLVP 60

Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD-----VDLVINFKSIED 178
           ++V  A+   R+E+     E GF+LDG PR   QAE LD++++     +D V++ ++ ED
Sbjct: 61  DEVTIAMAKDRMEQP--DAEGGFLLDGFPRNVSQAEALDELLETEGMKLDAVLDLEAPED 118

Query: 179 QLVK--------RNLESEAF-----SPHKEFLR--LGGARFS-AADAASAWKEKFRIYAE 222
           ++VK        RN     F      P KE +    GG  +    D+    +++  +Y  
Sbjct: 119 EVVKRIAGRRVCRNEPKHVFHVTYTPPKKEGVCDVCGGELYQRDDDSEETVRKRLEVYHT 178

Query: 223 QGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL 257
           Q + + DYY  Q  +          E  +  L AL
Sbjct: 179 QTEPIIDYYKSQGLVATIAATGPVDEVTRRALEAL 213

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.

Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) (taxid: 100226)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|B4LP08|KAD2_DROVI Adenylate kinase 2, mitochondrial OS=Drosophila virilis GN=Adk2 PE=3 SV=1

 Score = 93.2 bits (230), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 108/208 (51%), Gaps = 26/208 (12%)

Query: 59  PPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE 118
           P   GV  +L+G PG  K   A  L K   V H+S G ++R E+S  S L  ++   ++E
Sbjct: 14  PSNLGVNAILLGPPGSGKGTQAPLLQKKFCVCHLSTGDMLRAEISSGSKLGAELKKVMDE 73

Query: 119 GKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD-----VDLVINF 173
           GKLV +D++  ++   L++   +  +GF+LDG PRT +QA+ LD ++D     +D VI F
Sbjct: 74  GKLVSDDLVVDMIDSNLDKPECK--NGFLLDGFPRTVVQAQKLDTLLDKRRTSLDAVIEF 131

Query: 174 KSIEDQLVKRNLES------------EAFSPHKEFLR--LGGARF--SAADAASAWKEKF 217
            +I+D L+ R +              E F+P K  ++  + G      + D   A K++ 
Sbjct: 132 -AIDDNLLVRRITGRLIHQASGRSYHEEFAPPKVQMKDDITGEPLIKRSDDNVDALKKRL 190

Query: 218 RIYAEQGKSLEDYYSKQRKLLNFQVAAA 245
             Y +Q K L DYY    + L+F+V AA
Sbjct: 191 EAYHKQTKPLVDYYG--LRGLHFKVDAA 216

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in energy metabolism and nucleotide synthesis that is essential for maintenance and cell growth.

Drosophila virilis (taxid: 7244)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|B4KLY1|KAD2_DROMO Adenylate kinase 2, mitochondrial OS=Drosophila mojavensis GN=Adk2 PE=3 SV=1

 Score = 92.0 bits (227), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 109/208 (52%), Gaps = 26/208 (12%)

Query: 59  PPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE 118
           P   GV  +L+G PG  K   A  L +   V H+S G ++R E++  S L  ++   ++E
Sbjct: 14  PSTAGVNAILLGPPGSGKGTQAPLLKEKFCVCHLSTGDMLRAEIASGSKLGAELKKVMDE 73

Query: 119 GKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD-----VDLVINF 173
           GKLV +D++  ++   L++   +  +GF+LDG PRT +QA+ LD ++D     +D VI F
Sbjct: 74  GKLVSDDLVVDMIDSNLDKPECK--NGFLLDGFPRTVVQAQKLDSLLDKRKTSLDAVIEF 131

Query: 174 KSIEDQLVKRNLES------------EAFSPHKEFLR--LGGARF--SAADAASAWKEKF 217
            +I+D L+ R +              E F+P K  ++  + G      + D A A K++ 
Sbjct: 132 -AIDDNLLVRRITGRLIHQASGRSYHEEFAPPKVPMKDDITGEPLMKRSDDNAEALKKRL 190

Query: 218 RIYAEQGKSLEDYYSKQRKLLNFQVAAA 245
             Y +Q K L DYY    + L+F+V AA
Sbjct: 191 EAYHKQTKPLVDYYG--LRGLHFKVDAA 216

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in energy metabolism and nucleotide synthesis that is essential for maintenance and cell growth.

Drosophila mojavensis (taxid: 7230)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|B3MCQ5|KAD2_DROAN Adenylate kinase 2, mitochondrial OS=Drosophila ananassae GN=Adk2 PE=3 SV=1

 Score = 92.0 bits (227), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 109/208 (52%), Gaps = 26/208 (12%)

Query: 59  PPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE 118
           P R G+  +L+G PG  K   A  L +   V H+S G ++R E+S  S L  ++   ++ 
Sbjct: 14  PERIGINAILLGPPGSGKGTQAPLLKEKFCVCHLSTGDMLRAEISSGSKLGAELKKVMDA 73

Query: 119 GKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD-----VDLVINF 173
           GKLV +D++  ++   L++   +  +GF+LDG PRT +QAE LD ++D     +D VI F
Sbjct: 74  GKLVSDDLVVDMIDSNLDKPECK--NGFLLDGFPRTVVQAEKLDTLLDKRKANLDAVIEF 131

Query: 174 KSIEDQLVKRNLES------------EAFSPHKEFLR--LGGARF--SAADAASAWKEKF 217
            +I+D L+ R +              E F+P K+ +   + G      + D A A K++ 
Sbjct: 132 -AIDDSLLVRRITGRLIHQASGRSYHEEFAPPKKPMTDDVTGEPLMRRSDDNAEALKKRL 190

Query: 218 RIYAEQGKSLEDYYSKQRKLLNFQVAAA 245
             Y +Q + L DYY    + L+F+V AA
Sbjct: 191 EAYHKQTRPLVDYYG--LRGLHFKVDAA 216

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in energy metabolism and nucleotide synthesis that is essential for maintenance and cell growth.

Drosophila ananassae (taxid: 7217)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|B0X5E3|KAD2_CULQU Adenylate kinase 2, mitochondrial OS=Culex quinquefasciatus GN=Adk2 PE=3 SV=1

 Score = 91.7 bits (226), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 107/204 (52%), Gaps = 26/204 (12%)

Query: 63  GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLV 122
           G+  +L+G PG  K   A  L +   V H+S G ++R E++  S +  Q+   ++EGKLV
Sbjct: 19  GINAILLGPPGSGKGTQAPLLKEKFCVCHLSTGDMLRAEIAAGSKIGAQLKKVMDEGKLV 78

Query: 123 PEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD-----VDLVINFKSIE 177
            +D++  ++   L++   R  +GF+LDG PRT +QAE LDQ++D     +D VI F  I+
Sbjct: 79  SDDLVVDMIDSNLDKPECR--NGFLLDGFPRTVVQAEKLDQLLDKRNTGLDAVIEF-GID 135

Query: 178 DQLVKRNL------ESEAFSPHKEFLRLGGARFS----------AADAASAWKEKFRIYA 221
           D L+ R +      ++   S H+EF     A             + D A A  ++   Y 
Sbjct: 136 DSLLVRRITGRLIHQASGRSYHEEFHPPKVAMTDDVTGEPLMRRSDDNAHALVKRLESYH 195

Query: 222 EQGKSLEDYYSKQRKLLNFQVAAA 245
           +Q K L DYY+   + L+F+V AA
Sbjct: 196 KQTKPLADYYA--LRGLHFRVDAA 217

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in energy metabolism and nucleotide synthesis that is essential for maintenance and cell growth.

Culex quinquefasciatus (taxid: 7176)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	273
225452140	290	PREDICTED: probable adenylate kinase 1,	1.0	0.941	0.627	3e-90
255536957	274	adenylate kinase 1 chloroplast, putative	0.941	0.937	0.650	4e-88
224060231	271	predicted protein [Populus trichocarpa]	0.959	0.966	0.645	8e-82
297734390	321	unnamed protein product [Vitis vinifera]	0.937	0.797	0.602	7e-80
356558741	268	PREDICTED: probable adenylate kinase 1,	0.959	0.977	0.548	1e-79
225456276	299	PREDICTED: probable adenylate kinase 1,	0.992	0.906	0.570	6e-79
147856242	299	hypothetical protein VITISV_026010 [Viti	0.992	0.906	0.560	1e-77
77999238	283	adenylate kinase family-like protein [So	0.985	0.950	0.575	3e-77
77745507	283	adenylate kinase family-like protein [So	0.985	0.950	0.571	2e-76
217072076	265	unknown [Medicago truncatula] gi|3885151	0.970	1.0	0.553	1e-75

>gi|225452140|ref|XP_002263142.1| PREDICTED: probable adenylate kinase 1, chloroplastic [Vitis vinifera] gi|296090237|emb|CBI40056.3| unnamed protein product [Vitis vinifera]

 Score =  337 bits (864), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 182/290 (62%), Positives = 211/290 (72%), Gaps = 17/290 (5%)

Query: 1   MAGLSRLRAAAALQLRQ---IARSRAYGSAAAAQLQYDYDEECDLHGQASEPML-RLDSA 56
           MA L RL   A L LR+   +   R YGSAAAAQ+ YDY +  +         L R DS 
Sbjct: 1   MAKLCRLSTVAPLFLRRRIGVLPKREYGSAAAAQVDYDYYDYEEEEEVEVYRKLARADSE 60

Query: 57  GSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAV 116
           G    RGV WV+IG+PG KKHVYA+ LS+LL+VPHISMG+LVRQELSP S+LYKQIANAV
Sbjct: 61  GCVSGRGVHWVIIGEPGAKKHVYAERLSRLLQVPHISMGTLVRQELSPLSSLYKQIANAV 120

Query: 117 NEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSI 176
           N+GKLVPED+IF LLSKRLEEGY RGE+GFILDGIPRTRIQAEILDQI D+DLV+NFK  
Sbjct: 121 NQGKLVPEDIIFGLLSKRLEEGYCRGETGFILDGIPRTRIQAEILDQIADIDLVVNFKCT 180

Query: 177 EDQLVKRNLESEAFSPHKEFLRLGGA-------------RFSAADAASAWKEKFRIYAEQ 223
            D LV+ + +  + S H+EF R+                  + AD   AWKEK RIYAEQ
Sbjct: 181 GDCLVRNHPQDGSSSHHQEFHRMSNPGSYLNLPHQDDQLNSTTADTILAWKEKLRIYAEQ 240

Query: 224 GKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHMNAVSSSQKLTA 273
            K LEDYY KQ+KLL+FQVA APGETWQGLL+ALHLQH+NAV+SSQKLTA
Sbjct: 241 SKPLEDYYKKQQKLLDFQVAGAPGETWQGLLAALHLQHVNAVNSSQKLTA 290

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255536957|ref|XP_002509545.1| adenylate kinase 1 chloroplast, putative [Ricinus communis] gi|223549444|gb|EEF50932.1| adenylate kinase 1 chloroplast, putative [Ricinus communis]

 Score =  330 bits (846), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 186/286 (65%), Positives = 215/286 (75%), Gaps = 29/286 (10%)

Query: 1   MAGLSRLRAAAALQ-------LRQIARSRAYGSAAAAQLQY-DYDEEC-------DLHGQ 45
           MAGLSRL   AA         LR+I  SRAYGSAAA Q  Y DY  E        D H +
Sbjct: 1   MAGLSRLGLVAAATPPPYLSSLRRILTSRAYGSAAAIQYDYEDYYSEAEDGYDHQDRHSR 60

Query: 46  ASEPMLRLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPR 105
             EP L  DS  +  R GVQWVLIGDPGVKKHVYA+ LSKLLEVPHISMG+L+RQEL+PR
Sbjct: 61  HPEPCL--DSVANWGR-GVQWVLIGDPGVKKHVYAEELSKLLEVPHISMGTLLRQELNPR 117

Query: 106 SALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIV 165
           S+LYKQIANAVNEGKLVPE+VIF LLSKR EEGY RGE GFILDGIPRTRIQAEILDQI 
Sbjct: 118 SSLYKQIANAVNEGKLVPEEVIFGLLSKRFEEGYCRGEKGFILDGIPRTRIQAEILDQIA 177

Query: 166 DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGK 225
           D+DL++NFK  E+ LVK++L           + +  +  S   A +AWKEKFRIYAEQGK
Sbjct: 178 DIDLIVNFKCTEENLVKKDL-----------ITVKNSTSSVTGAGTAWKEKFRIYAEQGK 226

Query: 226 SLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHMNAVSSSQKL 271
           ++EDYY KQ+KL++FQ+AAAPGETWQGLL+ALHL+H+ A+SSSQKL
Sbjct: 227 AVEDYYRKQKKLIDFQMAAAPGETWQGLLAALHLKHLGAISSSQKL 272

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060231|ref|XP_002300097.1| predicted protein [Populus trichocarpa] gi|222847355|gb|EEE84902.1| predicted protein [Populus trichocarpa]

 Score =  309 bits (791), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 182/282 (64%), Positives = 210/282 (74%), Gaps = 20/282 (7%)

Query: 1   MAGLSRLRAAAALQLRQIAR---SRAYGSAAAAQLQYDY-----DEECDLHGQASEPMLR 52
           MA L+RL   AA  LR++ R   SR YGSAAA Q  YDY      E  + +GQ +     
Sbjct: 1   MAWLNRLAITAAPSLRRVIRFPDSRGYGSAAAVQCDYDYYDDYYSEAVEDYGQLNRLKPN 60

Query: 53  LDS-AGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQ 111
           L+S AGS   RGVQWVLIGDPG KKHVYA+ LSKLLEVPHISMG+L+RQEL+  S++YKQ
Sbjct: 61  LESVAGSASGRGVQWVLIGDPGAKKHVYAEKLSKLLEVPHISMGTLLRQELNLNSSVYKQ 120

Query: 112 IANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVI 171
           IANAVNEGKLVPEDVIF LLSKRLEEGYYRGE+GFILDGIPRTRIQAEILDQI D+DLV+
Sbjct: 121 IANAVNEGKLVPEDVIFGLLSKRLEEGYYRGENGFILDGIPRTRIQAEILDQIADIDLVV 180

Query: 172 NFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYY 231
           NFK  E  +VK+NL S   S            +S ADA S   EK RIYA++GK+LE YY
Sbjct: 181 NFKCGEGNVVKKNLISAENSS-----------YSVADAGSVSNEKSRIYAQEGKALEGYY 229

Query: 232 SKQRKLLNFQVAAAPGETWQGLLSALHLQHMNAVSSSQKLTA 273
            KQ+KLL+FQVA   GETWQGLL+ALHL+H++AVSSS KL A
Sbjct: 230 RKQQKLLDFQVAGGSGETWQGLLAALHLKHLSAVSSSPKLAA 271

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734390|emb|CBI15637.3| unnamed protein product [Vitis vinifera]

 Score =  303 bits (775), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 170/282 (60%), Positives = 203/282 (71%), Gaps = 26/282 (9%)

Query: 1   MAGLSRLRAAA--ALQLRQIARSRAYGSAAAAQLQY--DYDEECD---LHGQASEPMLRL 53
           MAGL RL+ AA   L LR++  SR++G+AAAAQ Q+  DY  E +   L G A+ PM+  
Sbjct: 52  MAGLCRLKLAAPLLLHLRRLTLSRSFGAAAAAQPQFNVDYHPESEYEPLRGSAAAPMV-- 109

Query: 54  DSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIA 113
           DS GS P RGVQWV IG+PG KKHVYA  LSKLL+VPHIS+ SLVRQ+L PRS+LY+QIA
Sbjct: 110 DSEGSAPSRGVQWVFIGNPGAKKHVYAGKLSKLLQVPHISIASLVRQDLHPRSSLYEQIA 169

Query: 114 NAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINF 173
           NAVN GKLVPE+VIF LLS+RLE GYYRGE GFILDGIPR+  QAEILDQ+  +DLV+NF
Sbjct: 170 NAVNNGKLVPENVIFGLLSERLEAGYYRGECGFILDGIPRSVSQAEILDQLAVIDLVVNF 229

Query: 174 KSIEDQLV--KRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYY 231
           K  +D  V  + +  S  F+  KE                AWK   R+Y EQ K LEDYY
Sbjct: 230 KCADDFFVEDRESGISSHFTTSKE---------------GAWKGTVRVYLEQIKPLEDYY 274

Query: 232 SKQRKLLNFQVAAAPGETWQGLLSALHLQHMNAVSSSQKLTA 273
            KQ+KLLNFQV  APGETW+GLL+ALHL+H++A  SSQKLTA
Sbjct: 275 RKQKKLLNFQVGNAPGETWKGLLAALHLKHVDAKHSSQKLTA 316

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558741|ref|XP_003547661.1| PREDICTED: probable adenylate kinase 1, chloroplastic-like [Glycine max]

 Score =  302 bits (773), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 153/279 (54%), Positives = 201/279 (72%), Gaps = 17/279 (6%)

Query: 1   MAGLSRLRAAAALQLRQIARSRAYGSAAAAQLQY------DYDEECDLHGQASEPMLRLD 54
           MA ++RLR+A       +   R +GSAAA Q  Y      D +EEC        P   LD
Sbjct: 1   MASIARLRSAVPPLKAFLRPERGFGSAAAVQCHYYDDDDDDVEEEC-------APRGMLD 53

Query: 55  SAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIAN 114
           + G  P RGVQWV+IG+PG K+H++A  LSKLLEVPHISM +L+ Q+L+PRS+LY+QIA+
Sbjct: 54  AQGCTPERGVQWVMIGEPGAKRHLFAQRLSKLLEVPHISMATLLSQDLNPRSSLYQQIAH 113

Query: 115 AVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFK 174
           +++ GKLVPED+IF LLSKRLE+GY RGE+GFILDG PRTRIQAEILD I  VDLV+NFK
Sbjct: 114 SLDHGKLVPEDIIFGLLSKRLEDGYSRGETGFILDGFPRTRIQAEILDHIAHVDLVVNFK 173

Query: 175 SIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQ 234
             E++L+K+NL +  F+ ++E++ +  +R           +  + +AE+ K LEDYY KQ
Sbjct: 174 CSEEELMKKNLGTRKFNAYQEYILMTSSR----STKQLQDDHDQSHAEECKLLEDYYRKQ 229

Query: 235 RKLLNFQVAAAPGETWQGLLSALHLQHMNAVSSSQKLTA 273
           +KLLNF+VA   GETW+GLL+ALHLQH+NA+SSSQKLTA
Sbjct: 230 KKLLNFEVAGGHGETWKGLLAALHLQHINALSSSQKLTA 268

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456276|ref|XP_002279733.1| PREDICTED: probable adenylate kinase 1, chloroplastic-like [Vitis vinifera]

 Score =  300 bits (767), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 169/296 (57%), Positives = 204/296 (68%), Gaps = 25/296 (8%)

Query: 1   MAGLSRLRAAA--ALQLRQIARSRAYGSAAAAQLQY--DYDEECD---LHGQASEPMLRL 53
           MAGL RL+ AA   L LR++  SR++G+AAAAQ Q+  DY  E +   L G A+ PM+  
Sbjct: 1   MAGLCRLKLAAPLLLHLRRLTLSRSFGAAAAAQPQFNVDYHPESEYEPLRGSAAAPMV-- 58

Query: 54  DSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIA 113
           DS GS P RGVQWV IG+PG KKHVYA  LSKLL+VPHIS+ SLVRQ+L PRS+LY+QIA
Sbjct: 59  DSEGSAPSRGVQWVFIGNPGAKKHVYAGKLSKLLQVPHISIASLVRQDLHPRSSLYEQIA 118

Query: 114 NAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINF 173
           NAVN GKLVPE+VIF LLS+RLE GYYRGE GFILDGIPR+  QAEILDQ+  +DLV+NF
Sbjct: 119 NAVNNGKLVPENVIFGLLSERLEAGYYRGECGFILDGIPRSVSQAEILDQLAVIDLVVNF 178

Query: 174 KSIEDQLVK----------------RNLESEAFSPHKEFLRLGGARFSAADAASAWKEKF 217
           K  +D  V+                 N +S         ++   A+        AWK   
Sbjct: 179 KCADDFFVEDRESGISSHCNECCSTNNSDSVTLDIPTRPVQAKIAKSVTTSKEGAWKGTV 238

Query: 218 RIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHMNAVSSSQKLTA 273
           R+Y EQ K LEDYY KQ+KLLNFQV  APGETW+GLL+ALHL+H++A  SSQKLTA
Sbjct: 239 RVYLEQIKPLEDYYRKQKKLLNFQVGNAPGETWKGLLAALHLKHVDAKHSSQKLTA 294

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856242|emb|CAN81789.1| hypothetical protein VITISV_026010 [Vitis vinifera]

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 166/296 (56%), Positives = 201/296 (67%), Gaps = 25/296 (8%)

Query: 1   MAGLSRLR--AAAALQLRQIARSRAYGSAAAAQLQY--DYDEECD---LHGQASEPMLRL 53
           MAGL RL+  A   L LR++  SR++G+AAAAQ Q+  DY  E +   L G A+ PM+  
Sbjct: 1   MAGLCRLKLGAPLLLHLRRLTLSRSFGAAAAAQPQFKVDYHPESEYEPLRGSATAPMV-- 58

Query: 54  DSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIA 113
           DS GS P RGVQWV IG+PG KKHVYA  LSKLL+VPHIS+ SLVRQ+L PRS+LY+QIA
Sbjct: 59  DSEGSAPSRGVQWVFIGNPGAKKHVYAGKLSKLLQVPHISIASLVRQDLHPRSSLYEQIA 118

Query: 114 NAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINF 173
           NA+N GKLVPE+VIF LLS+RLE GYYRGE GFILDGIPR+  QAEILDQ+  +DLV+NF
Sbjct: 119 NAMNNGKLVPENVIFGLLSERLEAGYYRGECGFILDGIPRSVSQAEILDQLAVIDLVVNF 178

Query: 174 KSIEDQLV----------------KRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKF 217
           K  +D  V                  N +S         ++   A+        AWK   
Sbjct: 179 KCADDFFVXDRESGISSHCNECCSTNNSDSVTLDIPTRPVQAKIAKSVTTSKEGAWKGTV 238

Query: 218 RIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHMNAVSSSQKLTA 273
           R+Y EQ   LEDYY KQ+KLLNFQV  APGETW+GLL+ALHL+H++A  SSQKLTA
Sbjct: 239 RVYLEQIXPLEDYYRKQKKLLNFQVGNAPGETWKGLLAALHLKHVDAKHSSQKLTA 294

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|77999238|gb|ABB16966.1| adenylate kinase family-like protein [Solanum tuberosum]

 Score =  294 bits (752), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 164/285 (57%), Positives = 199/285 (69%), Gaps = 16/285 (5%)

Query: 1   MAGLSRLRAAAALQLRQIARSRAYGSAAAAQLQYDYDEECDLHGQASEPMLRLDSAGSPP 60
           MA LSR+RAA    +R     R+YGSAAA QL     ++ +     +   +  +S GS P
Sbjct: 1   MALLSRIRAAVQPLIR-TGSLRSYGSAAA-QLVDYDYDDYEYEEYQNRSYVMEESEGSIP 58

Query: 61  RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGK 120
           RRGVQWV++GDP  ++HVYA  LSKLL+VPHISMGSLVRQEL PRS+LYKQIA+AVN+GK
Sbjct: 59  RRGVQWVIMGDPMAQRHVYAQWLSKLLDVPHISMGSLVRQELHPRSSLYKQIADAVNQGK 118

Query: 121 LVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQL 180
           LVPE+VIF LLSKRLEEGY  GESGFILDGIPR++IQAEILD+ VD+DLV+N K  ED L
Sbjct: 119 LVPEEVIFGLLSKRLEEGYCSGESGFILDGIPRSKIQAEILDKTVDIDLVLNLKCAED-L 177

Query: 181 VKRNLESEAFSPHKEFLRLGGARFSAADAASAW------------KEKFRIYAEQGKSLE 228
           V +  +S    P  EFLR G +  S +                  ++   ++AEQ   LE
Sbjct: 178 VSKKDKSSGLYPPLEFLRRGASGISTSRQPEGGHFRPSSIMDDVSRKNLHVHAEQVNPLE 237

Query: 229 DYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHMNAVSSSQKLTA 273
           +YY KQRKLL+FQVA  PGETWQGLL+ALHLQH NAV S+Q LTA
Sbjct: 238 EYYRKQRKLLDFQVAGGPGETWQGLLAALHLQHRNAVGSTQ-LTA 281

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|77745507|gb|ABB02652.1| adenylate kinase family-like protein [Solanum tuberosum]

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 163/285 (57%), Positives = 199/285 (69%), Gaps = 16/285 (5%)

Query: 1   MAGLSRLRAAAALQLRQIARSRAYGSAAAAQLQYDYDEECDLHGQASEPMLRLDSAGSPP 60
           MA LSR+RAA    +R     R+YGSAAA QL     ++ +     +   +  +S GS P
Sbjct: 1   MALLSRIRAAVQPLIR-TESLRSYGSAAA-QLVDYDYDDYEYEEYQNRSYVMEESEGSIP 58

Query: 61  RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGK 120
           RRGVQWV++GDP  ++HVYA  LSKLL+VPHISMGSLVRQEL PRS+LYKQIA+AVN+GK
Sbjct: 59  RRGVQWVIMGDPMAQRHVYAQWLSKLLDVPHISMGSLVRQELHPRSSLYKQIADAVNQGK 118

Query: 121 LVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQL 180
           LVPE+VIF LLSKRLEEGY  GESGFILDGIPR++IQAEILD+ VD+DLV+N K  ED L
Sbjct: 119 LVPEEVIFGLLSKRLEEGYCSGESGFILDGIPRSKIQAEILDKTVDIDLVLNLKCAED-L 177

Query: 181 VKRNLESEAFSPHKEFLRLGGARFSAADAASAW------------KEKFRIYAEQGKSLE 228
           V +  +S    P  EFLR G +  S +                  ++   ++AEQ   LE
Sbjct: 178 VSKKDKSTGLYPPLEFLRRGASGISTSRQPEGGHFRPSSIMDDVSRKNLHVHAEQVNPLE 237

Query: 229 DYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHMNAVSSSQKLTA 273
           +YY KQRKLL+FQVA  PGETWQGLL+ALHLQH +AV S+Q LTA
Sbjct: 238 EYYRKQRKLLDFQVAGGPGETWQGLLAALHLQHRDAVGSTQ-LTA 281

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072076|gb|ACJ84398.1| unknown [Medicago truncatula] gi|388515105|gb|AFK45614.1| unknown [Medicago truncatula]

 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 151/273 (55%), Positives = 202/273 (73%), Gaps = 8/273 (2%)

Query: 1   MAGLSRLRAAAALQLRQIARSRAYGSAAAAQLQYDYDEECDLHGQASEPMLRLDSAGSPP 60
           M+ ++RLRA +   L+ +  +R +GSAAA  LQY YD++ D     + P   LD+ GS P
Sbjct: 1   MSAIARLRAISP-SLKTL--NRPFGSAAA--LQYSYDDDEDEDLNYNAPRGMLDTEGSAP 55

Query: 61  RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGK 120
            RG+QWV+IG+PG K+HV+A+ LSKLLEVPHISM SL+ QEL+PRS+LY+QIA A++ GK
Sbjct: 56  ERGIQWVMIGEPGAKRHVFAERLSKLLEVPHISMASLLHQELNPRSSLYQQIAGALDHGK 115

Query: 121 LVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQL 180
           +VPE++I ALLSKRLE+GY RGE+GFILDGIPRTR+QAEIL+ +  VDLV+NFK  +++L
Sbjct: 116 IVPEEIILALLSKRLEDGYDRGETGFILDGIPRTRMQAEILNHVAHVDLVVNFKCPQEEL 175

Query: 181 VKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNF 240
           +K  L    F+  +E +    +      +   + +K    AE+ K LEDYY +Q+KLLNF
Sbjct: 176 MKNKLGLRKFTSCQEHIFKTSSWTPTKQSQDEYVQK---RAEESKMLEDYYREQKKLLNF 232

Query: 241 QVAAAPGETWQGLLSALHLQHMNAVSSSQKLTA 273
           +VA   GETWQGLL+ALHLQH+NA+SSSQKLTA
Sbjct: 233 EVAGGQGETWQGLLAALHLQHINALSSSQKLTA 265

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	273
TAIR|locus:2082329	263	AT3G01820 [Arabidopsis thalian	0.838	0.870	0.585	6.7e-65
TAIR|locus:2049842	284	ADK "adenosine kinase" [Arabid	0.523	0.503	0.517	4.6e-40
TAIR|locus:2056098	295	AT2G39270 [Arabidopsis thalian	0.542	0.501	0.483	7.4e-40
FB|FBgn0022708	240	Adk2 "Adenylate kinase-2" [Dro	0.494	0.562	0.335	3.1e-19
POMBASE|SPAC4G9.03	220	adk1 "adenylate kinase Adk1" [	0.468	0.581	0.281	2.7e-18
TIGR_CMR|CBU_0454	231	CBU_0454 "adenylate kinase" [C	0.421	0.497	0.313	2e-16
UNIPROTKB|F1NJ73	189	AK2 "Uncharacterized protein"	0.520	0.751	0.333	7.7e-16
UNIPROTKB|Q6P2A5	227	Ak3 "Adenylate kinase 3" [Ratt	0.446	0.537	0.309	1.1e-15
TIGR_CMR|CHY_1340	214	CHY_1340 "adenylate kinase" [C	0.421	0.537	0.311	1.1e-15
TAIR|locus:2177527	248	AT5G50370 [Arabidopsis thalian	0.512	0.564	0.284	1.3e-15

TAIR|locus:2082329 AT3G01820 [Arabidopsis thaliana (taxid:3702)]

 Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
 Identities = 144/246 (58%), Positives = 179/246 (72%)

Query:    32 LQYDYDEECD-LHG---QASEPMLRLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLL 87
             L++DYD + + L+G   + +EP L LD  GS P RGVQWVL+G PG  +HV+A+ LSKLL
Sbjct:    29 LEFDYDSDDEYLYGDDRRLAEPRLGLD--GSGPDRGVQWVLMGAPGAWRHVFAERLSKLL 86

Query:    88 EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFI 147
             EVPHISMGSLVRQEL+PRS+LYK+IA+AVNE KLVP+ V+FALLSKRLEEGY RGE+GFI
Sbjct:    87 EVPHISMGSLVRQELNPRSSLYKEIASAVNERKLVPKSVVFALLSKRLEEGYARGETGFI 146

Query:   148 LDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGXXXXXX 207
             L GIPRTR QAE LDQI  +DLV+N K  ED LV RN   E   P +EFL   G      
Sbjct:   147 LHGIPRTRFQAETLDQIAQIDLVVNLKCSEDHLVNRN---ETALPQQEFL---GSMLHSP 200

Query:   208 XXXXXWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPG-ETWQGLLSALHLQHMNAVS 266
                   +E   +YA++   +E+YY KQRKLL+F V  A   +TWQGLL+ALHL+ +N ++
Sbjct:   201 VAINARRESVGVYAQE---VEEYYRKQRKLLDFHVGGATSADTWQGLLAALHLKQVN-LT 256

Query:   267 SSQKLT 272
             +SQKLT
Sbjct:   257 TSQKLT 262

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=ISS

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

TAIR|locus:2049842 ADK "adenosine kinase" [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 4.6e-40, Sum P(2) = 4.6e-40
 Identities = 75/145 (51%), Positives = 94/145 (64%)

Query:    43 HGQASEPMLRLDSAG--SPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQ 100
             H  +  P L    A   +P  R VQWV +G PGV K  YA  LS LL VPHI+ G LVR+
Sbjct:    29 HASSPSPFLHGGGASRVAPKDRNVQWVFLGCPGVGKGTYASRLSTLLGVPHIATGDLVRE 88

Query:   101 ELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEI 160
             EL+    L ++++  VN+GKLV +++I  LLSKRLE G  RGESGFILDG PRT  QAEI
Sbjct:    89 ELASSGPLSQKLSEIVNQGKLVSDEIIVDLLSKRLEAGEARGESGFILDGFPRTMRQAEI 148

Query:   161 LDQIVDVDLVINFKSIEDQLVKRNL 185
             L  + D+DLV+N K  E+ LV + L
Sbjct:   149 LGDVTDIDLVVNLKLPEEVLVDKCL 173

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA;ISS

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0004017 "adenylate kinase activity" evidence=IDA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0048364 "root development" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

TAIR|locus:2056098 AT2G39270 [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 7.4e-40, Sum P(2) = 7.4e-40
 Identities = 73/151 (48%), Positives = 97/151 (64%)

Query:    37 DEECDLHGQASEPMLRLDSAGSPPRRG--VQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94
             D + DL  +A+  + +  S  + P +G    WV +G PGV K  YA  LS LL VPHI+ 
Sbjct:    37 DPKIDLE-EAAAQLGKSSSTSTSPYKGRNFHWVFLGCPGVGKGTYASRLSSLLGVPHIAT 95

Query:    95 GSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRT 154
             G LVR+ELS    L  Q+   VN GKLVP++ I +LLSKRL+ G  +GESG+ILDG PRT
Sbjct:    96 GDLVREELSSSGLLSSQLKELVNHGKLVPDEFIISLLSKRLQAGKDKGESGYILDGFPRT 155

Query:   155 RIQAEILDQIVDVDLVINFKSIEDQLVKRNL 185
               QAEIL+ + ++DLVIN K  E+ L+ + L
Sbjct:   156 VTQAEILEGVTNIDLVINLKLREEALLAKCL 186

GO:0005524 "ATP binding" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA;ISS

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

FB|FBgn0022708 Adk2 "Adenylate kinase-2" [Drosophila melanogaster (taxid:7227)]

 Score = 194 (73.4 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
 Identities = 50/149 (33%), Positives = 83/149 (55%)

Query:    59 PPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE 118
             P   G+  +L+G PG  K   A  L +   V H+S G ++R E+S  S L  ++   ++ 
Sbjct:    14 PENIGINAILLGPPGSGKGTQAPLLKEKFCVCHLSTGDMLRAEISSGSKLGAELKKVMDA 73

Query:   119 GKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD-----VDLVINF 173
             GKLV +D++  ++   L++   +  +GF+LDG PRT +QAE LD ++D     +D VI F
Sbjct:    74 GKLVSDDLVVDMIDSNLDKPECK--NGFLLDGFPRTVVQAEKLDTLLDKRKTNLDAVIEF 131

Query:   174 KSIEDQLVKRNL------ESEAFSPHKEF 196
              +I+D L+ R +      ++   S H+EF
Sbjct:   132 -AIDDSLLVRRITGRLIHQASGRSYHEEF 159

GO:0005739 "mitochondrion" evidence=ISS;IDA

GO:0004017 "adenylate kinase activity" evidence=ISS;IMP;IDA

GO:0006172 "ADP biosynthetic process" evidence=ISS

GO:0005758 "mitochondrial intermembrane space" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

POMBASE|SPAC4G9.03 adk1 "adenylate kinase Adk1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 182 (69.1 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
 Identities = 38/135 (28%), Positives = 79/135 (58%)

Query:    63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLV 122
             G++ +L+G PG  K   A N+ K   + H++ G ++R +++ ++ L K+    +++G LV
Sbjct:     3 GMRLILVGPPGAGKGTQAPNIQKKYGIAHLATGDMLRSQVARQTELGKEAKKIMDQGGLV 62

Query:   123 PEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAE----ILDQI-VDVDLVINFKSIE 177
              +D++  ++   +       ++GFILDG PRT +QAE    +LD++ +D++ V+  + ++
Sbjct:    63 SDDIVTGMIKDEILNNP-ECKNGFILDGFPRTVVQAEKLTALLDELKLDLNTVLELQ-VD 120

Query:   178 DQLVKRNLESEAFSP 192
             D+L+ R +      P
Sbjct:   121 DELLVRRITGRLVHP 135

GO:0004017 "adenylate kinase activity" evidence=IGI

GO:0005524 "ATP binding" evidence=ISM

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005758 "mitochondrial intermembrane space" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006172 "ADP biosynthetic process" evidence=IGI

GO:0046939 "nucleotide phosphorylation" evidence=IEA

TIGR_CMR|CBU_0454 CBU_0454 "adenylate kinase" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 173 (66.0 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
 Identities = 37/118 (31%), Positives = 70/118 (59%)

Query:    67 VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
             +L+G PG  K   AD ++K L++P IS G ++R  +  ++ L  ++   +  G LV +++
Sbjct:     6 ILLGLPGAGKGTQADFIAKHLDIPKISTGDMLRAAVKAKTPLGLEVKKIMESGGLVSDEI 65

Query:   127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKR 183
             + AL+ +R++        G++LDG PRT  QA+ L+   + +DLVI     E+++++R
Sbjct:    66 MIALVKERVK--LPDCHKGYLLDGFPRTLAQADALNAAAIKIDLVIEIDVPEEEIIER 121

GO:0004017 "adenylate kinase activity" evidence=ISS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=ISS

UNIPROTKB|F1NJ73 AK2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 52/156 (33%), Positives = 87/156 (55%)

Query:    52 RLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQ 111
             R  + G+  RRG++ VL+G PG  K   A  L++   V H++ G ++R  ++  S L K+
Sbjct:    16 RGQAPGTGLRRGIRAVLLGPPGAGKGTQAPKLAETYCVCHLATGDMLRAMVASGSELGKR 75

Query:   112 IANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD----- 166
             +   ++ GKLV ++++  L+   L+    +  +GF+LDG PRT  QAE+LD++++     
Sbjct:    76 LKETMDSGKLVSDEMVVELIENNLDTPPCK--NGFLLDGFPRTVKQAEMLDELLEKRREK 133

Query:   167 VDLVINFKSIEDQLVKRNLESEAFSP------HKEF 196
             +D VI F SI D L+ R +      P      H+EF
Sbjct:   134 LDSVIEF-SIPDSLLIRRITGRLIHPASGRSYHEEF 168

GO:0004017 "adenylate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0097226 "sperm mitochondrial sheath" evidence=IEA

UNIPROTKB|Q6P2A5 Ak3 "Adenylate kinase 3" [Rattus norvegicus (taxid:10116)]

 Score = 171 (65.3 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
 Identities = 39/126 (30%), Positives = 69/126 (54%)

Query:    67 VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
             V++G PG  K   +  ++K  E+ H+S G L+RQ +   + +       +++GKL+P+DV
Sbjct:    11 VIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRQNMLQGTEIGVLAKTFIDQGKLIPDDV 70

Query:   127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLE 186
             +  L    L+      +  ++LDG PRT  QAE LD++  +D VIN  ++  +++K  L 
Sbjct:    71 MTRLALHELKN---LTQCSWLLDGFPRTLPQAEALDRVYQIDTVINL-NVPFEVIKLRLT 126

Query:   187 SEAFSP 192
             +    P
Sbjct:   127 ARWIHP 132

GO:0005524 "ATP binding" evidence=IEA

TIGR_CMR|CHY_1340 CHY_1340 "adenylate kinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 161 (61.7 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
 Identities = 38/122 (31%), Positives = 69/122 (56%)

Query:    67 VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
             +++G PG  K   A+ + K   + HIS G + R  L  ++ L  +    +++G+LVP+++
Sbjct:     4 LIMGPPGAGKGTQAEKIVKEFGITHISTGDMFRAALKNQTPLGLKAKEYMDKGELVPDEI 63

Query:   127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLV 181
             + A++ +R+         GF+LDG PRT  QAE LD+      + +D VIN +   ++L+
Sbjct:    64 VIAMVEERISAPDCA--KGFLLDGFPRTIPQAEALDKKLAEMGITLDGVINIEVPREELI 121

Query:   182 KR 183
             +R
Sbjct:   122 ER 123

GO:0004017 "adenylate kinase activity" evidence=ISS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=ISS

TAIR|locus:2177527 AT5G50370 [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
 Identities = 43/151 (28%), Positives = 82/151 (54%)

Query:    47 SEPMLRLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRS 106
             SE + R+  A  P +R    V IG PG  K   +  +     + H+S G ++R  ++ ++
Sbjct:    21 SELLRRMKCASKPDKR---LVFIGPPGSGKGTQSPVIKDEFCLCHLSTGDMLRAAVAAKT 77

Query:   107 ALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD 166
              L  +   A+++G+LV +D++  ++ + +     + + GFILDG PRT  QAE LD++++
Sbjct:    78 PLGVKAKEAMDKGELVSDDLVVGIMDEAMNRP--KCQKGFILDGFPRTVTQAEKLDEMLN 135

Query:   167 -----VDLVINFKSIEDQLVKRNLESEAFSP 192
                  +D V+NF +I+D +++  +      P
Sbjct:   136 RRGAQIDKVLNF-AIDDSVLEERITGRWIHP 165

GO:0004017 "adenylate kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.4	0.766
3rd Layer	2.7.4.3	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	273
PLN02459	261	PLN02459, PLN02459, probable adenylate kinase	8e-58
cd01428	194	cd01428, ADK, Adenylate kinase (ADK) catalyzes the	1e-42
TIGR01351	210	TIGR01351, adk, adenylate kinase	3e-36
pfam00406	186	pfam00406, ADK, Adenylate kinase	1e-25
PTZ00088	229	PTZ00088, PTZ00088, adenylate kinase 1; Provisiona	1e-23
PRK02496	184	PRK02496, adk, adenylate kinase; Provisional	9e-23
COG0563	178	COG0563, Adk, Adenylate kinase and related kinases	2e-22
PRK00279	215	PRK00279, adk, adenylate kinase; Reviewed	2e-21
PRK14526	211	PRK14526, PRK14526, adenylate kinase; Provisional	6e-16
PRK14528	186	PRK14528, PRK14528, adenylate kinase; Provisional	1e-15
PLN02200	234	PLN02200, PLN02200, adenylate kinase family protei	4e-15
TIGR01359	183	TIGR01359, UMP_CMP_kin_fam, UMP-CMP kinase family	2e-14
PRK14530	215	PRK14530, PRK14530, adenylate kinase; Provisional	2e-14
PLN02674	244	PLN02674, PLN02674, adenylate kinase	2e-13
PRK14532	188	PRK14532, PRK14532, adenylate kinase; Provisional	3e-13
PRK14531	183	PRK14531, PRK14531, adenylate kinase; Provisional	9e-13
PRK13808	333	PRK13808, PRK13808, adenylate kinase; Provisional	2e-12
PRK14527	191	PRK14527, PRK14527, adenylate kinase; Provisional	3e-12
TIGR01360	188	TIGR01360, aden_kin_iso1, adenylate kinase, isozym	6e-12
PLN02842	505	PLN02842, PLN02842, nucleotide kinase	1e-10
PRK14529	223	PRK14529, PRK14529, adenylate kinase; Provisional	3e-09

>gnl|CDD|215253 PLN02459, PLN02459, probable adenylate kinase

 Score =  185 bits (470), Expect = 8e-58
 Identities = 101/262 (38%), Positives = 138/262 (52%), Gaps = 38/262 (14%)

Query: 41  DLHGQASEPMLRLDSAGSPPR-----RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG 95
           +   +++   L  D A +  R     R V WV +G PGV K  YA  LSKLL VPHI+ G
Sbjct: 3   ERDAKSTSA-LADDLASACDRSLAKGRNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATG 61

Query: 96  SLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTR 155
            LVR+E+     L  Q+   VN+GKLVP+++IF+LLSKRLE G   GESGFILDG PRT 
Sbjct: 62  DLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEEEGESGFILDGFPRTV 121

Query: 156 IQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFS------------------------ 191
            QAEIL+ + D+DLV+N K  E+ LV++ L     S                        
Sbjct: 122 RQAEILEGVTDIDLVVNLKLREEVLVEKCLGRRICSECGKNFNVADIDLKGEDGRPGIVM 181

Query: 192 -----PHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAP 246
                P +   +L      A D     K + R+Y E+ + +ED+Y K+ KLL F++    
Sbjct: 182 PPLLPPPECASKL---ITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGI 238

Query: 247 GETWQGLLSALHLQHMNAVSSS 268
            ETW  LL AL+L   +  S++
Sbjct: 239 PETWPRLLQALNLDDEDKRSAA 260

Length = 261

>gnl|CDD|238713 cd01428, ADK, Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

 Score =  143 bits (364), Expect = 1e-42
 Identities = 64/196 (32%), Positives = 102/196 (52%), Gaps = 15/196 (7%)

Query: 65  QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPE 124
           + +L+G PG  K   A+ L+K   +PHIS G L+R+E++  + L K+    ++ GKLVP+
Sbjct: 1   RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPD 60

Query: 125 DVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD----VDLVINFKSIEDQL 180
           +++  LL +RL++     + GFILDG PRT  QAE LD+++D     D VI     ++ L
Sbjct: 61  EIVIKLLKERLKKPD--CKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVL 118

Query: 181 VKRNLESEAFSP------HKEFLRLGGARFS--AADAASAWKEKFRIYAEQGKSLEDYYS 232
           ++R +      P      H     + G   S  + D     K++  +Y EQ   L DYY 
Sbjct: 119 IER-ILGRRICPVSGRVYHLGKDDVTGEPLSQRSDDNEETIKKRLEVYKEQTAPLIDYYK 177

Query: 233 KQRKLLNFQVAAAPGE 248
           K+ KL+    +    E
Sbjct: 178 KKGKLVEIDGSGDIDE 193

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates. Length = 194

>gnl|CDD|233369 TIGR01351, adk, adenylate kinase

 Score =  128 bits (323), Expect = 3e-36
 Identities = 66/214 (30%), Positives = 105/214 (49%), Gaps = 24/214 (11%)

Query: 65  QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPE 124
           + VL+G PG  K   A  +++   +PHIS G L+R E+   + L K+    + +G+LVP+
Sbjct: 1   RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPD 60

Query: 125 DVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD--VDLVINFKSIEDQLVK 182
           +++  L+ +RL +     E+GFILDG PRT  QAE LD ++   +D VI     +++LV+
Sbjct: 61  EIVNQLVKERLTQNQDN-ENGFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVE 119

Query: 183 R--------------NLESEAFSPHKEFL--RLGGARFS--AADAASAWKEKFRIYAEQG 224
           R              +L+   F+P K        G        D     K++  +Y EQ 
Sbjct: 120 RLSGRRICPSCGRVYHLK---FNPPKVPGCDDCTGELLIQREDDTEEVVKKRLEVYKEQT 176

Query: 225 KSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALH 258
           + L DYY K+  L+         E W+ +L AL 
Sbjct: 177 EPLIDYYKKRGILVQIDGNGPIDEVWKRILEALK 210

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 210

>gnl|CDD|201213 pfam00406, ADK, Adenylate kinase

 Score = 99.3 bits (248), Expect = 1e-25
 Identities = 57/186 (30%), Positives = 95/186 (51%), Gaps = 21/186 (11%)

Query: 68  LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVI 127
           L+G PG  K   A+ + +   +PH+S G L+R E+   + L K+    +++G+LVP++V+
Sbjct: 1   LLGPPGAGKGTQAERIVQKYGIPHLSTGDLLRAEVKSGTELGKEAKEYMDKGELVPDEVV 60

Query: 128 FALLSKRLEEGYYRGESGFILDGIPRTRIQAEILD----QIVDVDLVINFKSIEDQLVKR 183
             L+ +RLE+     ++GF+LDG PRT  QAE L+      + +D VI F   ++ LV+R
Sbjct: 61  IGLVKERLEQN--DCKNGFLLDGFPRTVPQAEALEEMLEYGIKLDYVIEFDVPDEVLVER 118

Query: 184 NLE-----SEAFSPHKEFLR--------LGGARFS--AADAASAWKEKFRIYAEQGKSLE 228
                   +   S H EF          + G   S  + D     K++   Y +Q + + 
Sbjct: 119 LTGRRIHPNSGRSYHLEFNPPKVPGKDDVTGEPLSQRSDDNEETVKKRLETYHKQTEPVI 178

Query: 229 DYYSKQ 234
           DYY K+
Sbjct: 179 DYYKKK 184

Length = 186

>gnl|CDD|240262 PTZ00088, PTZ00088, adenylate kinase 1; Provisional

 Score = 95.3 bits (237), Expect = 1e-23
 Identities = 41/126 (32%), Positives = 75/126 (59%), Gaps = 6/126 (4%)

Query: 61  RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGK 120
           +  ++ VL G PGV K  +A+ LSK   + HI+MG+++R+E+  ++ + K+I   V  G 
Sbjct: 4   KGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGN 63

Query: 121 LVPEDVIFALLSKRLEE---GYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIE 177
           LVP++++ A++   + +     ++G   FILDG PR   Q + L +I ++DL +N     
Sbjct: 64  LVPDNLVIAIVKDEIAKVTDDCFKG---FILDGFPRNLKQCKELGKITNIDLFVNIYLPR 120

Query: 178 DQLVKR 183
           + L+K+
Sbjct: 121 NILIKK 126

Length = 229

>gnl|CDD|179433 PRK02496, adk, adenylate kinase; Provisional

 Score = 91.7 bits (228), Expect = 9e-23
 Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 23/177 (12%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           + +G PG  K   A  L++ L +PHIS G ++RQ +  ++ L  +    +++G+LVP+ +
Sbjct: 5   IFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQL 64

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD-----VDLVINFKSIEDQLV 181
           +  L+ +RL++      +G+ILDG PR   QA  LD+++       + V+N    +D +V
Sbjct: 65  VLDLVQERLQQP--DAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVV 122

Query: 182 KRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLL 238
           +R L                AR    D     + +  +Y EQ   L DYY  ++KLL
Sbjct: 123 ERLL----------------ARGRKDDTEEVIRRRLEVYREQTAPLIDYYRDRQKLL 163

Length = 184

>gnl|CDD|223637 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide transport and metabolism]

 Score = 90.8 bits (226), Expect = 2e-22
 Identities = 52/173 (30%), Positives = 89/173 (51%), Gaps = 22/173 (12%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           +++G PG  K   A  L+K L +PH+  G ++R  ++ R+ L ++I   +++G+LVP+++
Sbjct: 4   LILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEI 63

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLV 181
           +  L+ +RL+E     ++GFILDG PRT  QA  L ++     V +D+VI       + +
Sbjct: 64  VNGLVKERLDEA--DCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIELD--VPEEL 119

Query: 182 KRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQ 234
                           RL G R    D     K++ ++Y EQ   L +YYS  
Sbjct: 120 -------------LLERLLGRRVREDDNEETVKKRLKVYHEQTAPLIEYYSVT 159

Length = 178

>gnl|CDD|234711 PRK00279, adk, adenylate kinase; Reviewed

 Score = 89.1 bits (222), Expect = 2e-21
 Identities = 54/191 (28%), Positives = 97/191 (50%), Gaps = 22/191 (11%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           +L+G PG  K   A  +++   +PHIS G ++R  +   + L K+  + ++ G+LVP+++
Sbjct: 4   ILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEI 63

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLV 181
           +  L+ +RL +     ++GF+LDG PRT  QAE LD++     + +D VI     +++LV
Sbjct: 64  VIGLVKERLAQPDC--KNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELV 121

Query: 182 KRNL-----ESEAFSPHKEFLR--------LGGARFS--AADAASAWKEKFRIYAEQGKS 226
           +R        +   + H +F          + G      A D     +++  +Y +Q   
Sbjct: 122 ERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELIQRADDNEETVRKRLEVYHKQTAP 181

Query: 227 LEDYYSKQRKL 237
           L DYY K+ KL
Sbjct: 182 LIDYYKKKGKL 192

Length = 215

>gnl|CDD|172992 PRK14526, PRK14526, adenylate kinase; Provisional

 Score = 74.1 bits (182), Expect = 6e-16
 Identities = 55/189 (29%), Positives = 85/189 (44%), Gaps = 19/189 (10%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           V +G PG  K   A  LS  L   HIS G L R+ +   + L K+I   V  G+LVP+ +
Sbjct: 4   VFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSI 63

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKR--- 183
              ++  ++     +    FILDG PR   QA+ LD+ +    +INF   E+ L+KR   
Sbjct: 64  TIKIVEDKINT--IKNNDNFILDGFPRNINQAKALDKFLPNIKIINFLIDEELLIKRLSG 121

Query: 184 -----------NLESEAFSPHKEFLRL-GGARFSAA-DAASAWKEKFRIYAEQGKSLEDY 230
                      N+ +   +  K    +  G  +    D   + K + + Y  Q K L ++
Sbjct: 122 RRICKSCNNIFNIYTLP-TKEKGICDVCKGDLYQRKDDKEESLKTRLQEYKLQTKPLIEF 180

Query: 231 YSKQRKLLN 239
           YSK  +L N
Sbjct: 181 YSKCNRLNN 189

Length = 211

>gnl|CDD|172994 PRK14528, PRK14528, adenylate kinase; Provisional

 Score = 72.7 bits (178), Expect = 1e-15
 Identities = 51/178 (28%), Positives = 88/178 (49%), Gaps = 23/178 (12%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           + +G PG  K   A  L + L +P IS G ++R+ +  ++A+  +    ++ G LVP+ V
Sbjct: 5   IFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSV 64

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIV-----DVDLVINFKSIEDQLV 181
           +  ++  R+ E     ++GF+LDG PRT  QA+ LD ++      +D  IN +  + +L+
Sbjct: 65  VIGIIKDRIREA--DCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELL 122

Query: 182 KRNLESEAFSPHKEFLRLGGARFS--AADAASAWKEKFRIYAEQGKSLEDYYSKQRKL 237
           KR               LG A     A D  +  K +   Y ++   L D+Y+ Q+KL
Sbjct: 123 KR--------------LLGRAEIEGRADDNEATIKNRLDNYNKKTLPLLDFYAAQKKL 166

Length = 186

>gnl|CDD|215125 PLN02200, PLN02200, adenylate kinase family protein

 Score = 72.2 bits (177), Expect = 4e-15
 Identities = 51/195 (26%), Positives = 92/195 (47%), Gaps = 21/195 (10%)

Query: 47  SEPMLRLDSAGSPPRRGVQWV--LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSP 104
           S  ++ L+  GS  +    ++  ++G PG  K    + + +     H+S G L+R+E++ 
Sbjct: 25  STEIITLEERGSSSKEKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIAS 84

Query: 105 RSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI 164
            S     I N + EGK+VP +V   L+ K +E       + F++DG PRT       ++I
Sbjct: 85  NSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESS---DNNKFLIDGFPRTEENRIAFERI 141

Query: 165 V--DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAE 222
           +  + ++V+ F   E+++VKR L            R  G      D     K++ +++  
Sbjct: 142 IGAEPNVVLFFDCPEEEMVKRVLN-----------RNQG---RVDDNIDTIKKRLKVFNA 187

Query: 223 QGKSLEDYYSKQRKL 237
               + DYYSK+ KL
Sbjct: 188 LNLPVIDYYSKKGKL 202

Length = 234

>gnl|CDD|130426 TIGR01359, UMP_CMP_kin_fam, UMP-CMP kinase family

 Score = 69.7 bits (171), Expect = 2e-14
 Identities = 47/179 (26%), Positives = 82/179 (45%), Gaps = 20/179 (11%)

Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           V +VL G PG  K      + +     H+S G L+R E+   S   + I + +  GK+VP
Sbjct: 1   VVFVL-GGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVP 59

Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTR--IQA--EILDQIVDVDLVINFKSIEDQ 179
            +V   LL   ++     G   F++DG PR    ++A  +++D  V+   V+ F   E+ 
Sbjct: 60  SEVTVKLLKNAIQAD---GSKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEV 116

Query: 180 LVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLL 238
           ++KR L+    S   +            D   + K++FR Y EQ   + ++Y  + K+ 
Sbjct: 117 MIKRLLKRGQSSGRVD------------DNIESIKKRFRTYNEQTLPVIEHYENKGKVK 163

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. Length = 183

>gnl|CDD|237747 PRK14530, PRK14530, adenylate kinase; Provisional

 Score = 70.2 bits (172), Expect = 2e-14
 Identities = 53/210 (25%), Positives = 92/210 (43%), Gaps = 24/210 (11%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVR----QELSPRSALYKQIANAVNEGKLV 122
           +L+G PG  K   + NL++   V H++ G  +R     ++S     Y      ++ G+LV
Sbjct: 7   LLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDTPGEYMDAGELV 66

Query: 123 PEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVK 182
           P+ V+  ++ + L +       GF+LDG PR   QAE L+ I D+D+V+     E++LV 
Sbjct: 67  PDAVVNEIVEEALSDA-----DGFVLDGYPRNLEQAEYLESITDLDVVLYLDVSEEELVD 121

Query: 183 R------------NLESEAFSPHKEFLR-LGGARFSAA--DAASAWKEKFRIYAEQGKSL 227
           R            N   E   P +E +    G        D     +E+  ++ E  + +
Sbjct: 122 RLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGELIQRDDDTEETVRERLDVFEENTEPV 181

Query: 228 EDYYSKQRKLLNFQVAAAPGETWQGLLSAL 257
            ++Y  Q  L+       P E W  +  A+
Sbjct: 182 IEHYRDQGVLVEVDGEQTPDEVWADIQDAI 211

Length = 215

>gnl|CDD|178279 PLN02674, PLN02674, adenylate kinase

 Score = 68.0 bits (166), Expect = 2e-13
 Identities = 53/223 (23%), Positives = 110/223 (49%), Gaps = 27/223 (12%)

Query: 47  SEPMLRLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRS 106
           +E + R+  +  P +R    +LIG PG  K   +  +     + H++ G ++R  ++ ++
Sbjct: 18  TELLRRMKCSSKPDKR---LILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKT 74

Query: 107 ALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD 166
            L  +   A+++G+LV +D++  ++ + +++     + GFILDG PRT +QA+ LD+++ 
Sbjct: 75  PLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP--SCQKGFILDGFPRTVVQAQKLDEMLA 132

Query: 167 -----VDLVINFKSIEDQLVKRNLESEAFSP------HKEFL--RLGGARFSAA------ 207
                +D V+NF +I+D +++  +      P      H +F   ++ G            
Sbjct: 133 KQGAKIDKVLNF-AIDDAILEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQR 191

Query: 208 --DAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGE 248
             D A+  K +   + +Q + + DYY+K+  + N      P E
Sbjct: 192 KDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKE 234

Length = 244

>gnl|CDD|184729 PRK14532, PRK14532, adenylate kinase; Provisional

 Score = 66.4 bits (162), Expect = 3e-13
 Identities = 49/176 (27%), Positives = 82/176 (46%), Gaps = 19/176 (10%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           +L G P   K   A  L +   +  +S G ++R  ++  S L +++   ++ G+LV +++
Sbjct: 4   ILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEI 63

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD-----VDLVINFKSIEDQLV 181
           + AL+ +RL E       G I DG PRT  QAE LD+++      +D+VI  K  ++ L+
Sbjct: 64  VIALIEERLPEA--EAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALI 121

Query: 182 KRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKL 237
           +R +        K F   G       D    +  +   Y  Q   L  YY+ Q KL
Sbjct: 122 ERIV--------KRFEEQG----RPDDNPEVFVTRLDAYNAQTAPLLPYYAGQGKL 165

Length = 188

>gnl|CDD|172997 PRK14531, PRK14531, adenylate kinase; Provisional

 Score = 64.8 bits (158), Expect = 9e-13
 Identities = 49/177 (27%), Positives = 87/177 (49%), Gaps = 25/177 (14%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           + +G PG  K   A  L     + H+S G L+R E++  SAL ++    +N G+LV + +
Sbjct: 6   LFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDAL 65

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD-----VDLVINFKSIEDQLV 181
           + A++  +L+        G++LDG PRT  QAE L+ +++     ++ V+  +  +  L+
Sbjct: 66  VLAIVESQLKA---LNSGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLI 122

Query: 182 KRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLL 238
           +R L                AR  A D  +  + +  +Y E+   L D+Y +QR LL
Sbjct: 123 ERLL----------------ARGRADDNEAVIRNRLEVYREKTAPLIDHY-RQRGLL 162

Length = 183

>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional

 Score = 65.7 bits (160), Expect = 2e-12
 Identities = 52/177 (29%), Positives = 88/177 (49%), Gaps = 13/177 (7%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           +L+G PG  K   A  L +   +  +S G ++R  ++  + +  +  + +  G LVP++V
Sbjct: 4   ILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEV 63

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLV 181
           +  ++S R+E+      +GFILDG PRT  QAE LD +     + +D V+  +  E  L+
Sbjct: 64  VVGIISDRIEQP--DAANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALL 121

Query: 182 KRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLL 238
            R +E+         +R  G    A D      ++   Y  Q + L  YYS++RKLL
Sbjct: 122 AR-VETRVAE-----MRARGEEVRADDTPEVLAKRLASYRAQTEPLVHYYSEKRKLL 172

Length = 333

>gnl|CDD|237745 PRK14527, PRK14527, adenylate kinase; Provisional

 Score = 63.7 bits (155), Expect = 3e-12
 Identities = 47/197 (23%), Positives = 88/197 (44%), Gaps = 20/197 (10%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           + +G PG  K   A+ L++ L +  +S G ++R  ++  + L ++    +  G LVP+++
Sbjct: 10  IFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDEL 69

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD-----VDLVINFKSIEDQLV 181
           I AL+   L           I DG PRT  QAE LD++++     +  V+  +  +++L+
Sbjct: 70  ILALIRDELAG---MEPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELI 126

Query: 182 KRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQ 241
           +R             +        + D     + + ++Y EQ + L DYY  +  L    
Sbjct: 127 RR------------IVERARQEGRSDDNEETVRRRQQVYREQTQPLVDYYEARGHLKRVD 174

Query: 242 VAAAPGETWQGLLSALH 258
               P E +  +L AL 
Sbjct: 175 GLGTPDEVYARILKALG 191

Length = 191

>gnl|CDD|130427 TIGR01360, aden_kin_iso1, adenylate kinase, isozyme 1 subfamily

 Score = 62.5 bits (152), Expect = 6e-12
 Identities = 48/192 (25%), Positives = 79/192 (41%), Gaps = 16/192 (8%)

Query: 68  LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVI 127
           ++G PG  K    + + +     H+S G L+R E++  S   KQ+   +  G LVP D +
Sbjct: 8   IVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTV 67

Query: 128 FALLSKRLEEGYYRGES-GFILDGIPRTRIQAEILD-QIVDVDLVINFKSIEDQLVKRNL 185
             LL   +      G S GF++DG PR   Q E  + +I    LV+ F   ED +VKR  
Sbjct: 68  LDLLKDAMVAA--LGTSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKR-- 123

Query: 186 ESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAA 245
                      L+         D     K++   Y +  + +  YY  + KL        
Sbjct: 124 ----------LLKRAETSGRVDDNEKTIKKRLETYYKATEPVIAYYETKGKLRKINAEGT 173

Query: 246 PGETWQGLLSAL 257
             + +  + +A+
Sbjct: 174 VDDVFLQVCTAI 185

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. Length = 188

>gnl|CDD|178435 PLN02842, PLN02842, nucleotide kinase

 Score = 61.0 bits (148), Expect = 1e-10
 Identities = 31/94 (32%), Positives = 58/94 (61%), Gaps = 2/94 (2%)

Query: 91  HISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDG 150
           HIS G L+R E+S  + + K+    +N G+LVP++++ A+++ RL     + E G++LDG
Sbjct: 25  HISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAK-EKGWLLDG 83

Query: 151 IPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKR 183
            PR+  QA+ L+++ +  D+ I     ++ L+ R
Sbjct: 84  YPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDR 117

Length = 505

>gnl|CDD|237746 PRK14529, PRK14529, adenylate kinase; Provisional

 Score = 55.5 bits (134), Expect = 3e-09
 Identities = 27/94 (28%), Positives = 54/94 (57%), Gaps = 8/94 (8%)

Query: 83  LSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142
           + K  ++ HI  G++ R+ +   + L K+    ++ G LVP+D+   ++ + L++    G
Sbjct: 20  VKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQ---DG 76

Query: 143 ESGFILDGIPRTRIQAEILDQI-----VDVDLVI 171
           ++G++LDG PR ++QAE L +      + +D VI
Sbjct: 77  KNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVI 110

Length = 223

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	273
PLN02459	261	probable adenylate kinase	100.0
PLN02674	244	adenylate kinase	100.0
PRK14526	211	adenylate kinase; Provisional	100.0
KOG3079	195	consensus Uridylate kinase/adenylate kinase [Nucle	100.0
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	100.0
PRK14529	223	adenylate kinase; Provisional	100.0
PTZ00088	229	adenylate kinase 1; Provisional	100.0
PRK00279	215	adk adenylate kinase; Reviewed	100.0
PRK13808	333	adenylate kinase; Provisional	100.0
PRK14530	215	adenylate kinase; Provisional	100.0
PRK14528	186	adenylate kinase; Provisional	100.0
PRK14531	183	adenylate kinase; Provisional	100.0
KOG3078	235	consensus Adenylate kinase [Nucleotide transport a	100.0
PRK14532	188	adenylate kinase; Provisional	100.0
PLN02200	234	adenylate kinase family protein	100.0
PRK14527	191	adenylate kinase; Provisional	100.0
PRK02496	184	adk adenylate kinase; Provisional	100.0
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	100.0
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	100.0
PLN02842	505	nucleotide kinase	100.0
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	100.0
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	100.0
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	99.97
PRK01184	184	hypothetical protein; Provisional	99.8
PRK13974	212	thymidylate kinase; Provisional	99.79
PRK03839	180	putative kinase; Provisional	99.77
PRK08356	195	hypothetical protein; Provisional	99.76
PRK13973	213	thymidylate kinase; Provisional	99.76
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	99.73
PRK13949	169	shikimate kinase; Provisional	99.72
PRK06217	183	hypothetical protein; Validated	99.72
PRK08233	182	hypothetical protein; Provisional	99.68
PRK13975	196	thymidylate kinase; Provisional	99.67
PLN02924	220	thymidylate kinase	99.66
PHA02530	300	pseT polynucleotide kinase; Provisional	99.64
PRK13948	182	shikimate kinase; Provisional	99.62
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	99.62
PRK13947	171	shikimate kinase; Provisional	99.61
PRK08118	167	topology modulation protein; Reviewed	99.61
PRK03731	171	aroL shikimate kinase II; Reviewed	99.6
PRK00625	173	shikimate kinase; Provisional	99.6
PLN02199	303	shikimate kinase	99.6
PRK13946	184	shikimate kinase; Provisional	99.59
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	99.59
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	99.59
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	99.58
PRK00698	205	tmk thymidylate kinase; Validated	99.58
PRK14730	195	coaE dephospho-CoA kinase; Provisional	99.57
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	99.56
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	99.54
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	99.54
PRK00131	175	aroK shikimate kinase; Reviewed	99.53
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	99.53
PRK14734	200	coaE dephospho-CoA kinase; Provisional	99.53
PRK05057	172	aroK shikimate kinase I; Reviewed	99.53
PRK04182	180	cytidylate kinase; Provisional	99.53
PRK06762	166	hypothetical protein; Provisional	99.51
PRK04040	188	adenylate kinase; Provisional	99.51
PLN02422	232	dephospho-CoA kinase	99.51
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	99.5
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	99.48
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	99.48
PRK14731	208	coaE dephospho-CoA kinase; Provisional	99.48
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	99.46
PRK13976	209	thymidylate kinase; Provisional	99.46
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	99.46
PTZ00451	244	dephospho-CoA kinase; Provisional	99.45
PRK12339	197	2-phosphoglycerate kinase; Provisional	99.45
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	99.45
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	99.44
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	99.43
PRK07933	213	thymidylate kinase; Validated	99.43
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	99.43
PRK14733	204	coaE dephospho-CoA kinase; Provisional	99.43
PRK14738	206	gmk guanylate kinase; Provisional	99.41
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	99.4
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	99.4
KOG3354	191	consensus Gluconate kinase [Carbohydrate transport	99.39
PRK07261	171	topology modulation protein; Provisional	99.39
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	99.39
PRK14732	196	coaE dephospho-CoA kinase; Provisional	99.38
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	99.38
PRK09825	176	idnK D-gluconate kinase; Provisional	99.37
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	99.36
KOG3220	225	consensus Similar to bacterial dephospho-CoA kinas	99.36
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	99.36
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	99.35
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	99.33
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	99.32
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	99.32
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	99.32
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	99.31
KOG3327	208	consensus Thymidylate kinase/adenylate kinase [Nuc	99.28
PRK11545	163	gntK gluconate kinase 1; Provisional	99.26
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	99.22
PRK00300	205	gmk guanylate kinase; Provisional	99.22
PRK06547	172	hypothetical protein; Provisional	99.21
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	99.2
PRK05541	176	adenylylsulfate kinase; Provisional	99.19
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	99.17
PRK14737	186	gmk guanylate kinase; Provisional	99.16
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	99.16
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	99.16
PRK05480	209	uridine/cytidine kinase; Provisional	99.14
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	99.12
PRK12338	319	hypothetical protein; Provisional	99.12
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	99.11
PRK00889	175	adenylylsulfate kinase; Provisional	99.1
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	99.06
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	99.06
KOG3877	393	consensus NADH:ubiquinone oxidoreductase, NDUFA10/	99.02
PRK00023	225	cmk cytidylate kinase; Provisional	99.01
COG0645	170	Predicted kinase [General function prediction only	98.99
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	98.98
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	98.96
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	98.95
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.94
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	98.93
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	98.93
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	98.91
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	98.9
PRK12269	863	bifunctional cytidylate kinase/ribosomal protein S	98.88
PRK12337	475	2-phosphoglycerate kinase; Provisional	98.87
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	98.86
PRK04220	301	2-phosphoglycerate kinase; Provisional	98.86
PRK03846	198	adenylylsulfate kinase; Provisional	98.85
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	98.84
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.83
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	98.8
PRK07667	193	uridine kinase; Provisional	98.79
PRK06696	223	uridine kinase; Validated	98.79
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	98.77
PLN02772	398	guanylate kinase	98.75
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	98.73
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	98.7
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	98.7
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.7
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	98.64
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	98.64
PHA03132	580	thymidine kinase; Provisional	98.62
PF03668	284	ATP_bind_2: P-loop ATPase protein family; InterPro	98.62
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	98.61
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	98.57
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.52
COG4639	168	Predicted kinase [General function prediction only	98.52
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	98.51
PF01591	222	6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR0130	98.51
PTZ00301	210	uridine kinase; Provisional	98.49
PRK07429	327	phosphoribulokinase; Provisional	98.48
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	98.42
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	98.42
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	98.38
COG3709	192	Uncharacterized component of phosphonate metabolis	98.34
PHA00729	226	NTP-binding motif containing protein	98.33
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	98.33
COG1660	286	Predicted P-loop-containing kinase [General functi	98.29
PRK05439	311	pantothenate kinase; Provisional	98.28
PLN02348	395	phosphoribulokinase	98.23
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	98.22
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	98.17
PRK15453	290	phosphoribulokinase; Provisional	98.13
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	98.12
PRK09169	2316	hypothetical protein; Validated	98.06
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.04
PRK06761	282	hypothetical protein; Provisional	98.02
PF00004	132	AAA: ATPase family associated with various cellula	98.0
PF13189	179	Cytidylate_kin2: Cytidylate kinase-like family; PD	97.93
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	97.93
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.89
PLN02165	334	adenylate isopentenyltransferase	97.87
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.83
PLN02318	656	phosphoribulokinase/uridine kinase	97.82
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	97.82
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	97.8
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	97.78
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	97.78
PLN02840	421	tRNA dimethylallyltransferase	97.76
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.75
PHA03136	378	thymidine kinase; Provisional	97.73
KOG3308	225	consensus Uncharacterized protein of the uridine k	97.69
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.68
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	97.67
COG4185	187	Uncharacterized protein conserved in bacteria [Fun	97.63
smart00382	148	AAA ATPases associated with a variety of cellular	97.62
PLN02748	468	tRNA dimethylallyltransferase	97.62
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	97.61
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	97.59
CHL00181	287	cbbX CbbX; Provisional	97.58
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	97.53
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	97.53
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	97.51
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	97.51
PHA02575	227	1 deoxynucleoside monophosphate kinase; Provisiona	97.5
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	97.5
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.47
CHL00195	489	ycf46 Ycf46; Provisional	97.47
PRK14974	336	cell division protein FtsY; Provisional	97.41
TIGR00064	272	ftsY signal recognition particle-docking protein F	97.41
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	97.41
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.38
TIGR03709	264	PPK2_rel_1 polyphosphate:nucleotide phosphotransfe	97.35
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.35
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	97.34
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	97.32
TIGR03707	230	PPK2_P_aer polyphosphate kinase 2, PA0141 family.	97.31
KOG0707	231	consensus Guanylate kinase [Nucleotide transport a	97.31
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	97.29
PRK08099	399	bifunctional DNA-binding transcriptional repressor	97.27
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	97.27
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.27
KOG0738	491	consensus AAA+-type ATPase [Posttranslational modi	97.26
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.26
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	97.25
PRK12377	248	putative replication protein; Provisional	97.25
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.25
PRK09087	226	hypothetical protein; Validated	97.24
TIGR00959	428	ffh signal recognition particle protein. This mode	97.23
KOG3062	281	consensus RNA polymerase II elongator associated p	97.2
PRK10867	433	signal recognition particle protein; Provisional	97.17
PF08303	168	tRNA_lig_kinase: tRNA ligase kinase domain; InterP	97.17
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	97.16
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	97.15
PF13173	128	AAA_14: AAA domain	97.15
PRK03992	389	proteasome-activating nucleotidase; Provisional	97.14
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	97.13
PF13245	76	AAA_19: Part of AAA domain	97.13
COG2256	436	MGS1 ATPase related to the helicase subunit of the	97.13
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.12
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	97.11
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	97.11
PRK10416	318	signal recognition particle-docking protein FtsY;	97.1
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	97.08
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	97.07
PRK08116	268	hypothetical protein; Validated	97.06
PRK05973	237	replicative DNA helicase; Provisional	97.06
PRK06620	214	hypothetical protein; Validated	97.06
PLN02796	347	D-glycerate 3-kinase	97.04
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	97.04
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	97.04
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	97.01
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	97.0
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	97.0
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.0
PF05729	166	NACHT: NACHT domain	96.97
PRK04328	249	hypothetical protein; Provisional	96.96
TIGR03708	493	poly_P_AMP_trns polyphosphate:AMP phosphotransfera	96.96
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	96.95
PHA02244	383	ATPase-like protein	96.95
PF07726	131	AAA_3: ATPase family associated with various cellu	96.94
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	96.92
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	96.91
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	96.9
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	96.9
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	96.9
PRK07952	244	DNA replication protein DnaC; Validated	96.89
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	96.89
COG3896	205	Chloramphenicol 3-O-phosphotransferase [Defense me	96.88
KOG1969	877	consensus DNA replication checkpoint protein CHL12	96.87
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	96.86
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	96.86
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	96.86
PRK04195	482	replication factor C large subunit; Provisional	96.84
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	96.84
PLN03046	460	D-glycerate 3-kinase; Provisional	96.81
PRK08533	230	flagellar accessory protein FlaH; Reviewed	96.8
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	96.8
COG3911	183	Predicted ATPase [General function prediction only	96.79
PRK13342	413	recombination factor protein RarA; Reviewed	96.78
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	96.78
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	96.78
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	96.77
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	96.76
PRK08903	227	DnaA regulatory inactivator Hda; Validated	96.76
PRK06526	254	transposase; Provisional	96.73
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	96.71
COG1220	444	HslU ATP-dependent protease HslVU (ClpYQ), ATPase	96.7
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	96.7
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	96.7
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	96.69
KOG1533	290	consensus Predicted GTPase [General function predi	96.69
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	96.69
CHL00176	638	ftsH cell division protein; Validated	96.68
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	96.68
KOG0635	207	consensus Adenosine 5'-phosphosulfate kinase [Inor	96.68
TIGR00101	199	ureG urease accessory protein UreG. This model rep	96.67
PRK12402	337	replication factor C small subunit 2; Reviewed	96.66
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	96.66
COG1484	254	DnaC DNA replication protein [DNA replication, rec	96.66
PRK13695	174	putative NTPase; Provisional	96.65
PRK08084	235	DNA replication initiation factor; Provisional	96.64
PRK06893	229	DNA replication initiation factor; Validated	96.64
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	96.64
PRK06067	234	flagellar accessory protein FlaH; Validated	96.63
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	96.63
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.63
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	96.61
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	96.61
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	96.6
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	96.6
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	96.59
PRK09183	259	transposase/IS protein; Provisional	96.58
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	96.56
PRK08181	269	transposase; Validated	96.55
PRK04296	190	thymidine kinase; Provisional	96.55
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	96.55
PRK15455	644	PrkA family serine protein kinase; Provisional	96.53
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	96.52
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	96.52
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.52
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	96.51
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	96.51
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	96.51
PLN03025	319	replication factor C subunit; Provisional	96.5
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	96.49
PRK09435	332	membrane ATPase/protein kinase; Provisional	96.48
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	96.47
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	96.46
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	96.46
PF03976	228	PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR	96.45
cd01918	149	HprK_C HprK/P, the bifunctional histidine-containi	96.45
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	96.45
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	96.44
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	96.43
PHA03134	340	thymidine kinase; Provisional	96.41
COG1855	604	ATPase (PilT family) [General function prediction	96.41
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	96.4
PRK14086	617	dnaA chromosomal replication initiation protein; P	96.4
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	96.39
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	96.39
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	96.39
TIGR02237	209	recomb_radB DNA repair and recombination protein R	96.38
KOG4235	244	consensus Mitochondrial thymidine kinase 2/deoxygu	96.36
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	96.36
PRK13768	253	GTPase; Provisional	96.36
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	96.36
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.36
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	96.35
cd03116	159	MobB Molybdenum is an essential trace element in t	96.35
KOG0780	483	consensus Signal recognition particle, subunit Srp	96.35
KOG0726	440	consensus 26S proteasome regulatory complex, ATPas	96.35
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	96.34
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	96.33
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	96.33
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	96.33
PTZ00202	550	tuzin; Provisional	96.32
COG0714	329	MoxR-like ATPases [General function prediction onl	96.31
KOG4622	291	consensus Predicted nucleotide kinase [General fun	96.31
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	96.3
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	96.3
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	96.28
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	96.28
COG4619	223	ABC-type uncharacterized transport system, ATPase	96.27
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	96.26
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	96.24
PF00005	137	ABC_tran: ABC transporter This structure is on hol	96.24
KOG0736	953	consensus Peroxisome assembly factor 2 containing	96.23
PRK13341	725	recombination factor protein RarA/unknown domain f	96.23
KOG0741	744	consensus AAA+-type ATPase [Posttranslational modi	96.23
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	96.22
cd00983	325	recA RecA is a bacterial enzyme which has roles in	96.22
cd01394	218	radB RadB. The archaeal protein radB shares simila	96.21
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	96.2
KOG0737	386	consensus AAA+-type ATPase [Posttranslational modi	96.2
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	96.2
COG4240	300	Predicted kinase [General function prediction only	96.19
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	96.19
PRK06921	266	hypothetical protein; Provisional	96.19
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	96.19
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	96.17
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	96.17
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	96.16
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	96.16
PHA02544	316	44 clamp loader, small subunit; Provisional	96.15
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	96.14
PF01443	234	Viral_helicase1: Viral (Superfamily 1) RNA helicas	96.14
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	96.13
KOG0743	457	consensus AAA+-type ATPase [Posttranslational modi	96.13
CHL00206	2281	ycf2 Ycf2; Provisional	96.13
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	96.12
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	96.1
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	96.08
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	96.08
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	96.07
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	96.07
PRK10646	153	ADP-binding protein; Provisional	96.07
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	96.07
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	96.06
PHA02624	647	large T antigen; Provisional	96.06
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	96.06
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	96.05
PF13479	213	AAA_24: AAA domain	96.04
KOG0651	388	consensus 26S proteasome regulatory complex, ATPas	96.03
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	96.03
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.03
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	96.02
PRK05642	234	DNA replication initiation factor; Validated	96.02
KOG1384	348	consensus tRNA delta(2)-isopentenylpyrophosphate t	96.02
PRK06835	329	DNA replication protein DnaC; Validated	96.02
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	96.01
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	96.01
PRK09354	349	recA recombinase A; Provisional	96.0
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	96.0
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	95.98
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	95.98
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	95.97
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	95.97
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	95.97
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	95.97
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	95.96
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	95.96
PRK09302	509	circadian clock protein KaiC; Reviewed	95.96
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	95.95
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	95.95
cd03269	210	ABC_putative_ATPase This subfamily is involved in	95.95
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	95.94
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	95.94
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	95.93
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	95.93
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	95.93
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	95.93
PF13555	62	AAA_29: P-loop containing region of AAA domain	95.93
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	95.92
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	95.92
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	95.92
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	95.92
COG1127	263	Ttg2A ABC-type transport system involved in resist	95.92
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	95.92
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	95.91
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	95.91
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	95.9
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	95.9
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	95.9
PRK11784	345	tRNA 2-selenouridine synthase; Provisional	95.9
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	95.9
PRK07940	394	DNA polymerase III subunit delta'; Validated	95.89
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	95.89
TIGR01223	182	Pmev_kin_anim phosphomevalonate kinase, animal typ	95.89
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	95.88
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	95.88
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	95.88
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	95.88
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	95.88
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	95.87
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	95.87
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	95.87
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	95.86
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	95.86
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	95.86
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	95.85
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	95.85
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	95.85
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	95.85
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	95.85
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	95.84
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	95.84
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	95.84
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	95.83
PRK14493	274	putative bifunctional molybdopterin-guanine dinucl	95.83
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	95.83
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	95.83
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	95.82
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	95.82
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	95.82
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	95.82
cd01128	249	rho_factor Transcription termination factor rho is	95.81
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	95.81
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	95.8
COG2812	515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	95.8
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	95.8
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	95.8
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	95.8
cd03246	173	ABCC_Protease_Secretion This family represents the	95.8
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	95.8
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	95.8
TIGR03708	493	poly_P_AMP_trns polyphosphate:AMP phosphotransfera	95.8
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	95.79
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	95.79
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	95.79
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	95.78
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	95.78
COG0802	149	Predicted ATPase or kinase [General function predi	95.78
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	95.78
PRK00149	450	dnaA chromosomal replication initiation protein; R	95.78
PRK00411	394	cdc6 cell division control protein 6; Reviewed	95.77
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	95.77
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	95.77
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	95.76
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	95.76
cd03215	182	ABC_Carb_Monos_II This family represents domain II	95.76
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	95.76
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	95.76
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	95.76
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	95.75
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	95.75
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	95.75
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	95.75
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	95.75
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	95.74
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	95.74
TIGR02236	310	recomb_radA DNA repair and recombination protein R	95.73

>PLN02459 probable adenylate kinase

Probab=100.00  E-value=3.4e-43  Score=307.23  Aligned_cols=203  Identities=46%  Similarity=0.755  Sum_probs=187.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~  141 (273)
                      ++++|+|+|||||||||+|+.|+++||++||++++++|+++..++++|+.+++++.+|.++|++++..++.++|......
T Consensus        28 ~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~~  107 (261)
T PLN02459         28 RNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEEE  107 (261)
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhccccc
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999864222


Q ss_pred             CcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCC--------------CC----
Q 024067          142 GESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGG--------------AR----  203 (273)
Q Consensus       142 ~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~--------------~~----  203 (273)
                      ...|||||||||+..|++.|+....++.||+|+++++++++|+.+|+.|+.||+.||...              +|    
T Consensus       108 ~~~g~iLDGFPRt~~Qa~~Le~~~~id~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~~~~~~~~~~~p~~~~  187 (261)
T PLN02459        108 GESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLREEVLVEKCLGRRICSECGKNFNVADIDLKGEDGRPGIVMPPLLPP  187 (261)
T ss_pred             CCceEEEeCCCCCHHHHHHHHhcCCCCEEEEEECCHHHHHHHhhccccccccCccccccccccccccccccccCCCCCCC
Confidence            468999999999999999999888899999999999999999999999999999999742              11    


Q ss_pred             --------CCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcCCCC
Q 024067          204 --------FSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHMNA  264 (273)
Q Consensus       204 --------~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~~~~  264 (273)
                              .+.||+++.+++|++.|+++..|+++||+++++++.||+++++++||++|.+.|...|.+.
T Consensus       188 ~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~~~i~~~l~~~~~~~  256 (261)
T PLN02459        188 PECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPRLLQALNLDDEDK  256 (261)
T ss_pred             cccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHhchhhhhh
Confidence                    2578999999999999999999999999999999999999999999999999999988754

>PLN02674 adenylate kinase

Probab=100.00  E-value=9.4e-43  Score=303.07  Aligned_cols=193  Identities=25%  Similarity=0.412  Sum_probs=180.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG  142 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~  142 (273)
                      .++|+|+|||||||||+|++|+++||++|||+|+++|+++..++++|+.+++++.+|+++|++++..++.+++....+  
T Consensus        31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~--  108 (244)
T PLN02674         31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC--  108 (244)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCc--
Confidence            468999999999999999999999999999999999999999999999999999999999999999999999987644  


Q ss_pred             cceEEEeCCCCCHHHHHHHHhh-----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCC-------------
Q 024067          143 ESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF-------------  204 (273)
Q Consensus       143 ~~g~IlDg~P~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~-------------  204 (273)
                      ..|||||||||+..|++.|+..     ..+|.||+|++|++++++|+.+|..|+.||+.||..+.|+             
T Consensus       109 ~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~~~~~g~~L  188 (244)
T PLN02674        109 QKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPL  188 (244)
T ss_pred             CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccccccCCccccccCCCcccCcccccCCcc
Confidence            5899999999999999998764     4699999999999999999999999999999999876554             


Q ss_pred             --CCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHH
Q 024067          205 --SAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL  257 (273)
Q Consensus       205 --~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l  257 (273)
                        +.||+++.+++|++.|++...|+.+||++.++++.||+++++++|++.|...|
T Consensus       189 ~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~~i~~~l  243 (244)
T PLN02674        189 IQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTAEVQKAL  243 (244)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence              47889999999999999999999999999999999999999999999999876

>PRK14526 adenylate kinase; Provisional

Probab=100.00  E-value=7.6e-40  Score=280.57  Aligned_cols=196  Identities=28%  Similarity=0.405  Sum_probs=181.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~  143 (273)
                      ++|+|+|+|||||||+++.|++.++++|+++|+++++++..+++.|..+++++.+|.++|++++..++.++|....+  .
T Consensus         1 m~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~--~   78 (211)
T PRK14526          1 MKLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKN--N   78 (211)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccc--c
Confidence            36889999999999999999999999999999999999999999999999999999999999999999999987533  5


Q ss_pred             ceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCC---------------CCCC
Q 024067          144 SGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF---------------SAAD  208 (273)
Q Consensus       144 ~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~---------------~~~d  208 (273)
                      .|||||||||+..|++.|+.......+|+|+++++++++|+.+|..|+.||+.||..+.|+               +.||
T Consensus        79 ~g~ilDGfPR~~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~R~DD  158 (211)
T PRK14526         79 DNFILDGFPRNINQAKALDKFLPNIKIINFLIDEELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDD  158 (211)
T ss_pred             CcEEEECCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCCeeeccCCC
Confidence            8999999999999999998765555788999999999999999999999999999766543               5788


Q ss_pred             cHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcC
Q 024067          209 AASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQH  261 (273)
Q Consensus       209 ~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~  261 (273)
                      +++.+++|++.|++...|+.+||++.++++.||+++++++|+++|.+.|..++
T Consensus       159 ~~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i~~~l~~~~  211 (211)
T PRK14526        159 KEESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKLIEIISKKN  211 (211)
T ss_pred             CHHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcccC
Confidence            99999999999999999999999999999999999999999999999998764

>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=100.00  E-value=2.3e-39  Score=264.60  Aligned_cols=186  Identities=23%  Similarity=0.435  Sum_probs=171.7

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccC-CChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSP-RSALYKQIANAVNEGKLVPEDVIFALLSKRLEEG  138 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~-~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~  138 (273)
                      +..+++|+++|+|||||.|+|.+++++||+.|+|+|||||++... +++.|..|++++.+|.++|.+++..+|.++|.+.
T Consensus         5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~~   84 (195)
T KOG3079|consen    5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRSS   84 (195)
T ss_pred             ccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHhc
Confidence            457889999999999999999999999999999999999999986 9999999999999999999999999999999875


Q ss_pred             ccCCcceEEEeCCCCCHHHHHHHHhhC--CCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHH
Q 024067          139 YYRGESGFILDGIPRTRIQAEILDQIV--DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEK  216 (273)
Q Consensus       139 ~~~~~~g~IlDg~P~~~~qa~~l~~~~--~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~r  216 (273)
                        ...++|+||||||+..|...|+...  .++++++|+|++|++++|++.|....            .+.||+.+.+++|
T Consensus        85 --~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~------------~R~DDn~esikkR  150 (195)
T KOG3079|consen   85 --GDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSN------------SRSDDNEESIKKR  150 (195)
T ss_pred             --CCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccC------------CCCCCchHHHHHH
Confidence              3346699999999999999998654  68999999999999999999998632            2679999999999


Q ss_pred             HHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067          217 FRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL  259 (273)
Q Consensus       217 l~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~  259 (273)
                      +..|.+...|+++||++.++++.||++.++++|+.++...+..
T Consensus       151 ~et~~~~t~Pvi~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id~  193 (195)
T KOG3079|consen  151 LETYNKSTLPVIEYYEKKGKLLKINAERSVDDVFEEVVTAIDA  193 (195)
T ss_pred             HHHHHHcchHHHHHHHccCcEEEecCCCCHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999988764

>TIGR01351 adk adenylate kinases

Probab=100.00  E-value=4.6e-39  Score=276.00  Aligned_cols=192  Identities=32%  Similarity=0.536  Sum_probs=177.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCcc
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGES  144 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~~  144 (273)
                      +|+|+|+|||||||+|+.|+++||++||++++++|+++...++++..+++++.+|..+|++++..++.+++.+..+ ...
T Consensus         1 rI~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~-~~~   79 (210)
T TIGR01351         1 RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQD-NEN   79 (210)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcc-cCC
Confidence            4889999999999999999999999999999999999998899999999999999999999999999999987322 257


Q ss_pred             eEEEeCCCCCHHHHHHHHhhC--CCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCC---------------CCC
Q 024067          145 GFILDGIPRTRIQAEILDQIV--DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF---------------SAA  207 (273)
Q Consensus       145 g~IlDg~P~~~~qa~~l~~~~--~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~---------------~~~  207 (273)
                      ||||||||++..|++.|+...  .|+++|+|++|++++++|+.+|..|+.||+.||..+.++               +.|
T Consensus        80 ~~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~~R~d  159 (210)
T TIGR01351        80 GFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQRED  159 (210)
T ss_pred             cEEEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCccccCCC
Confidence            999999999999999998765  589999999999999999999999999999999765442               567


Q ss_pred             CcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHH
Q 024067          208 DAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL  257 (273)
Q Consensus       208 d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l  257 (273)
                      |+++.+++|++.|+++..++.+||++.++++.||+++++++||+.|.+.|
T Consensus       160 D~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l  209 (210)
T TIGR01351       160 DTEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEAL  209 (210)
T ss_pred             CCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhh
Confidence            89999999999999999999999999999999999999999999999876

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK14529 adenylate kinase; Provisional

Probab=100.00  E-value=2.6e-39  Score=278.33  Aligned_cols=191  Identities=21%  Similarity=0.359  Sum_probs=171.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~  143 (273)
                      ++|+|+|||||||||+|+.|+++|+++|||+++++|+++..++++++.+++++.+|.++|++++..++.+++....   .
T Consensus         1 m~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~---~   77 (223)
T PRK14529          1 MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDG---K   77 (223)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccC---C
Confidence            4689999999999999999999999999999999999999899999999999999999999999999999998752   6


Q ss_pred             ceEEEeCCCCCHHHHHHHHhh-----CCCceEEEEccCHHHHHHHHhcCCcCCCccccc-ccCCCCC-------------
Q 024067          144 SGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFL-RLGGARF-------------  204 (273)
Q Consensus       144 ~g~IlDg~P~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y-~~~~~~~-------------  204 (273)
                      .|||||||||+..|++.|+..     ..||.||+|++|++++.+|+.+|+.|+.||+.| +..+.|+             
T Consensus        78 ~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~cd~~~~~  157 (223)
T PRK14529         78 NGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVCGGE  157 (223)
T ss_pred             CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccccccCCcccccccCCCcccCCcCcCcCCc
Confidence            899999999999999998754     469999999999999999999999999888655 3433321             


Q ss_pred             ---CCCCc-HHHHHHHHHHHHHh---hHHHHHHHHh-----cCcEEEEeCCCChhHHHHHHHHHH
Q 024067          205 ---SAADA-ASAWKEKFRIYAEQ---GKSLEDYYSK-----QRKLLNFQVAAAPGETWQGLLSAL  257 (273)
Q Consensus       205 ---~~~d~-~e~~~~rl~~y~~~---~~~l~~~y~~-----~~~~~~id~~~s~~ev~~~I~~~l  257 (273)
                         +.||+ +|.+++|++.|+++   ..++.+||++     .++++.||+++++++|+++|...|
T Consensus       158 l~~R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~~~V~~~i~~~l  222 (223)
T PRK14529        158 LSTRADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIKETLLKQL  222 (223)
T ss_pred             cccCCCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence               56785 78999999999987   4578899996     678999999999999999999876

>PTZ00088 adenylate kinase 1; Provisional

Probab=100.00  E-value=5.5e-39  Score=278.26  Aligned_cols=196  Identities=24%  Similarity=0.442  Sum_probs=178.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~  141 (273)
                      .+++|+|+|||||||||+|+.||++||++||++|+++|+++..++++|+.+++++.+|.++|++++..++.+++......
T Consensus         5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~   84 (229)
T PTZ00088          5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTDD   84 (229)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhccc
Confidence            46789999999999999999999999999999999999999888999999999999999999999999999999862002


Q ss_pred             CcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCC-------CC-----------
Q 024067          142 GESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGG-------AR-----------  203 (273)
Q Consensus       142 ~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~-------~~-----------  203 (273)
                      ...||||||||++..|+..|+....|++||+|+++++++++|+.+|+.|+.||+.||...       .|           
T Consensus        85 ~~~g~iLDGfPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~~~~~pp~~~~~~c~~~  164 (229)
T PTZ00088         85 CFKGFILDGFPRNLKQCKELGKITNIDLFVNIYLPRNILIKKLLGRRICNTCNRNFNIAHIRSDPYDMPPILPPADCEGC  164 (229)
T ss_pred             cCceEEEecCCCCHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHcCcCCCccCCcceecccccccccCCCCCCCCccccc
Confidence            358999999999999999998878899999999999999999999999999999998742       11           


Q ss_pred             -------CCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCc-EEEE---eCCCChhHHHHHHHHHH
Q 024067          204 -------FSAADAASAWKEKFRIYAEQGKSLEDYYSKQRK-LLNF---QVAAAPGETWQGLLSAL  257 (273)
Q Consensus       204 -------~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~-~~~i---d~~~s~~ev~~~I~~~l  257 (273)
                             .+.||+++.+++|++.|+++..++.+||++.++ ++.|   |+++++++|++.|.+.|
T Consensus       165 ~~~~~l~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~y~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~  229 (229)
T PTZ00088        165 KGNPKLQKRSDDTEEIVAHRLNTYESTNSPIIQFFKNENCNLVDFEITRGLRDFDDFYRIVLQRL  229 (229)
T ss_pred             CCcccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHhhC
Confidence                   257899999999999999999999999999999 9888   79999999999998753

>PRK00279 adk adenylate kinase; Reviewed

Probab=100.00  E-value=1.6e-37  Score=267.41  Aligned_cols=194  Identities=28%  Similarity=0.488  Sum_probs=178.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~  143 (273)
                      ++|+|+|+|||||||+|+.||++||++||++++++++++..+++.++.+++++.+|..+|++++..++.+++....+  .
T Consensus         1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~--~   78 (215)
T PRK00279          1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDC--K   78 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCc--c
Confidence            46999999999999999999999999999999999999998899999999999999999999999999999987543  4


Q ss_pred             ceEEEeCCCCCHHHHHHHHhh-----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCC--------------
Q 024067          144 SGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF--------------  204 (273)
Q Consensus       144 ~g~IlDg~P~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~--------------  204 (273)
                      .||||||||++..|++.|+..     ..++.+|+|+|+++++++|+.+|..|+.||..||....|+              
T Consensus        79 ~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~l~  158 (215)
T PRK00279         79 NGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELI  158 (215)
T ss_pred             CCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCCccc
Confidence            599999999999999999644     3688999999999999999999999999999999765543              


Q ss_pred             -CCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067          205 -SAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL  259 (273)
Q Consensus       205 -~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~  259 (273)
                       +.||+++.+++|+..|+++..++.+||++.++++.||+++++++||++|...|..
T Consensus       159 ~r~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~  214 (215)
T PRK00279        159 QRADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALGK  214 (215)
T ss_pred             CCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence             3678899999999999999999999999988999999999999999999998864

>PRK13808 adenylate kinase; Provisional

Probab=100.00  E-value=5.2e-36  Score=270.40  Aligned_cols=190  Identities=27%  Similarity=0.434  Sum_probs=170.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~  143 (273)
                      ++|+|+|||||||||+|.+|++.||++||++|++|++++..+++.|..+.+++.+|.++|++++..++.++|....+  .
T Consensus         1 mrIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~--~   78 (333)
T PRK13808          1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDA--A   78 (333)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccc--c
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999987644  5


Q ss_pred             ceEEEeCCCCCHHHHHHHHhh-----CCCceEEEEccCHHHHHHHHhcCCcCC-CcccccccCCCCCCCCCcHHHHHHHH
Q 024067          144 SGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFS-PHKEFLRLGGARFSAADAASAWKEKF  217 (273)
Q Consensus       144 ~g~IlDg~P~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~-~~~~~y~~~~~~~~~~d~~e~~~~rl  217 (273)
                      .||||||||++..|++.|+..     ..||+||+|+||++++++|+.+|..+. .++       ...+.||+++.+.+|+
T Consensus        79 ~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg-------~~~R~DD~~E~i~kRL  151 (333)
T PRK13808         79 NGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARG-------EEVRADDTPEVLAKRL  151 (333)
T ss_pred             CCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccC-------CccCCCCCHHHHHHHH
Confidence            899999999999999988754     369999999999999999999986532 112       1236788999999999


Q ss_pred             HHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcCC
Q 024067          218 RIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHM  262 (273)
Q Consensus       218 ~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~~  262 (273)
                      ..|+++..|+++||.+.+.++.||++.+++||+++|...|.....
T Consensus       152 ~~Y~~~t~PLl~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~~~~  196 (333)
T PRK13808        152 ASYRAQTEPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAVGA  196 (333)
T ss_pred             HHHHHHhHHHHHHhhccCcEEEEECCCCHHHHHHHHHHHHHHHhC
Confidence            999999999999999988899999999999999999999986643

>PRK14530 adenylate kinase; Provisional

Probab=100.00  E-value=1.6e-35  Score=254.93  Aligned_cols=192  Identities=24%  Similarity=0.424  Sum_probs=171.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHc-----cCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL-----SPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEE  137 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~-----~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~  137 (273)
                      +++|+|+|+|||||||+|+.|+++||++||+++++++++.     ...+..+. +++++..|..+|+++...++.+.+..
T Consensus         3 ~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~~~l~~~l~~   81 (215)
T PRK14530          3 QPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVNEIVEEALSD   81 (215)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence            4589999999999999999999999999999999999887     23445554 67889999999999999999888764


Q ss_pred             cccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCC-------------
Q 024067          138 GYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF-------------  204 (273)
Q Consensus       138 ~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~-------------  204 (273)
                           ..|||+||||++..|++.|+....++++|+|+++++++++|+.+|..|+.||+.||....++             
T Consensus        82 -----~~~~IldG~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~rl  156 (215)
T PRK14530         82 -----ADGFVLDGYPRNLEQAEYLESITDLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGEL  156 (215)
T ss_pred             -----CCCEEEcCCCCCHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCcccccCcccCCcc
Confidence                 36899999999999999998777899999999999999999999999999999998765442             


Q ss_pred             --CCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067          205 --SAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ  260 (273)
Q Consensus       205 --~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~  260 (273)
                        +.+|+++.+++|+..|+++..|+++||.+.++++.||+++++++||+.|...|...
T Consensus       157 ~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~~  214 (215)
T PRK14530        157 IQRDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAIDDA  214 (215)
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHhcc
Confidence              45778999999999999999999999999888999999999999999999998764

>PRK14528 adenylate kinase; Provisional

Probab=100.00  E-value=2.2e-35  Score=248.66  Aligned_cols=180  Identities=28%  Similarity=0.485  Sum_probs=165.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~  143 (273)
                      ++|+|+|+|||||||+|+.|+++||++++++++++++++..++++|..++.++..|.++|++++..++.+++.+..+  .
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~--~   79 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADC--K   79 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCc--c
Confidence            57999999999999999999999999999999999999998999999999999999999999999999999987543  5


Q ss_pred             ceEEEeCCCCCHHHHHHHHhh-----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHH
Q 024067          144 SGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFR  218 (273)
Q Consensus       144 ~g~IlDg~P~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~  218 (273)
                      .||||||||++..|++.|+..     ..+|++|+|+||++++++|+.+|....  |          +.||+++.+++|+.
T Consensus        80 ~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~--g----------r~dd~~e~i~~Rl~  147 (186)
T PRK14528         80 NGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIE--G----------RADDNEATIKNRLD  147 (186)
T ss_pred             CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCcccc--C----------CCCCCHHHHHHHHH
Confidence            799999999999999988754     369999999999999999999997532  1          45889999999999


Q ss_pred             HHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHH
Q 024067          219 IYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL  257 (273)
Q Consensus       219 ~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l  257 (273)
                      .|++...|+.+||+++++++.||+++++++|++.|.+.|
T Consensus       148 ~y~~~~~pv~~~y~~~~~~~~i~~~~~~~~v~~~~~~~~  186 (186)
T PRK14528        148 NYNKKTLPLLDFYAAQKKLSQVNGVGSLEEVTSLIQKEL  186 (186)
T ss_pred             HHHHHhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhC
Confidence            999999999999999999999999999999999998653

>PRK14531 adenylate kinase; Provisional

Probab=100.00  E-value=3.9e-35  Score=246.51  Aligned_cols=175  Identities=26%  Similarity=0.439  Sum_probs=161.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~  143 (273)
                      .+|+|+|+|||||||+|+.|+++||++||++++++|+++..++++++.+++++.+|..+|++++..++.+++...   ..
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~---~~   79 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKAL---NS   79 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhc---cC
Confidence            479999999999999999999999999999999999999999999999999999999999999999999888753   25


Q ss_pred             ceEEEeCCCCCHHHHHHHHhh-----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHH
Q 024067          144 SGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFR  218 (273)
Q Consensus       144 ~g~IlDg~P~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~  218 (273)
                      .||||||||++..|++.|+..     ..++.+|+|+||++++.+|+.+|.                +.||+++.+++|+.
T Consensus        80 ~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~----------------r~dD~~e~i~~Rl~  143 (183)
T PRK14531         80 GGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARG----------------RADDNEAVIRNRLE  143 (183)
T ss_pred             CcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCC----------------CCCCCHHHHHHHHH
Confidence            789999999999999988754     267899999999999999999985                34788899999999


Q ss_pred             HHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHH
Q 024067          219 IYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL  257 (273)
Q Consensus       219 ~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l  257 (273)
                      .|++...|+.+||+..++++.||+++++++|+++|...|
T Consensus       144 ~y~~~~~pv~~~y~~~~~~~~id~~~~~~~v~~~i~~~l  182 (183)
T PRK14531        144 VYREKTAPLIDHYRQRGLLQSVEAQGSIEAITERIEKVL  182 (183)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence            999999999999999889999999999999999999876

>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]

Probab=100.00  E-value=1.8e-35  Score=252.69  Aligned_cols=198  Identities=37%  Similarity=0.552  Sum_probs=183.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~  141 (273)
                      ++.+++++|+||+||+|+|.+|++.|++.||+++|++|+++..++++|.++++++++|+++||+++..++...+....  
T Consensus        14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~--   91 (235)
T KOG3078|consen   14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPR--   91 (235)
T ss_pred             cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhccccc--
Confidence            689999999999999999999999999999999999999999999999999999999999999999998888888763  


Q ss_pred             CcceEEEeCCCCCHHHHHHH-HhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCC---------------
Q 024067          142 GESGFILDGIPRTRIQAEIL-DQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFS---------------  205 (273)
Q Consensus       142 ~~~g~IlDg~P~~~~qa~~l-~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~---------------  205 (273)
                      ..++|++|||||+..|++.| +....+|.||+|+|+++.+.+|+.+|+.|+.+|+.||..+.|+.               
T Consensus        92 ~~~~~ildg~Prt~~qa~~l~~~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~~~~dDitgepL~qr  171 (235)
T KOG3078|consen   92 CQKGFILDGFPRTVQQAEELLDRIAQIDLVINLKVPEEVLVDRITGRRIHPASGRVYHLEFNPPKVPGKDDITGEPLIQR  171 (235)
T ss_pred             cccccccCCCCcchHHHHHHHHccCCcceEEEecCCHHHHHHHHhcccccCcccceecccccCCccccccccccChhhcC
Confidence            47999999999999988775 55678999999999999999999999999999999987665542               


Q ss_pred             CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcCC
Q 024067          206 AADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHM  262 (273)
Q Consensus       206 ~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~~  262 (273)
                      .+|+++.++.|++.|+++.+|+++||++.+++..+++.. +++||..|...|.....
T Consensus       172 ~dD~~e~v~~rL~~y~~~~~pv~eyY~k~~~l~~~~~~~-~~~v~~~v~~~l~~~~~  227 (235)
T KOG3078|consen  172 EDDKPEVVKKRLKAYKEQTKPVLEYYKKKGVLIEFSGEK-PEEVFPNVYAFLSKKVP  227 (235)
T ss_pred             ccccHHHHHHHHHHHhhcchHHHHHHHhcCeeeeccCcc-hhHhHHHHHHHHHhhhh
Confidence            578899999999999999999999999999999999988 99999999999988765

>PRK14532 adenylate kinase; Provisional

Probab=100.00  E-value=3e-34  Score=241.71  Aligned_cols=181  Identities=27%  Similarity=0.425  Sum_probs=163.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~  143 (273)
                      ++|+|+|+|||||||+|++||+++|++||++|+++++++..+++.++.+++++..|+.+|++++..++.+.+....  ..
T Consensus         1 ~~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~   78 (188)
T PRK14532          1 MNLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAE--AA   78 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcC--cc
Confidence            3689999999999999999999999999999999999998889999999999999999999999999999987653  36


Q ss_pred             ceEEEeCCCCCHHHHHHHHhh-----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHH
Q 024067          144 SGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFR  218 (273)
Q Consensus       144 ~g~IlDg~P~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~  218 (273)
                      .|||+||||++..|++.++..     ..||++|+|++|++++.+|+.+|..+.            .+++++++.+.+|+.
T Consensus        79 ~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~------------~r~dd~~~~~~~Rl~  146 (188)
T PRK14532         79 GGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQ------------GRPDDNPEVFVTRLD  146 (188)
T ss_pred             CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcC------------CCCCCCHHHHHHHHH
Confidence            899999999999999988643     468999999999999999999886421            145788889999999


Q ss_pred             HHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHH
Q 024067          219 IYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALH  258 (273)
Q Consensus       219 ~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~  258 (273)
                      .|.....++.+||++.+.++.||+++++++|+++|.+.|.
T Consensus       147 ~~~~~~~~i~~~y~~~~~~~~id~~~~~eev~~~I~~~l~  186 (188)
T PRK14532        147 AYNAQTAPLLPYYAGQGKLTEVDGMGSIEAVAASIDAALE  186 (188)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHh
Confidence            9999999999999988889999999999999999999885

>PLN02200 adenylate kinase family protein

Probab=100.00  E-value=2.6e-33  Score=243.91  Aligned_cols=184  Identities=25%  Similarity=0.458  Sum_probs=167.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~  141 (273)
                      .+++|+|+|+|||||||+|+.|++++|++||++++++++++...++.+..+.+++..|..+|++++..++.+++...   
T Consensus        42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~---  118 (234)
T PLN02200         42 TPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESS---  118 (234)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC---
Confidence            45789999999999999999999999999999999999999888899999999999999999999999999888753   


Q ss_pred             CcceEEEeCCCCCHHHHHHHHhh--CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHH
Q 024067          142 GESGFILDGIPRTRIQAEILDQI--VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRI  219 (273)
Q Consensus       142 ~~~g~IlDg~P~~~~qa~~l~~~--~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~  219 (273)
                      ...+|||||||++..|+..|+..  ..||.+|+|+++++++.+|+.+|...              +.+|+++.+++|+..
T Consensus       119 ~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~~--------------r~dd~~e~~~~Rl~~  184 (234)
T PLN02200        119 DNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQG--------------RVDDNIDTIKKRLKV  184 (234)
T ss_pred             CCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcCC--------------CCCCCHHHHHHHHHH
Confidence            24789999999999999988765  36999999999999999999988632              347788999999999


Q ss_pred             HHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcCC
Q 024067          220 YAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHM  262 (273)
Q Consensus       220 y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~~  262 (273)
                      |.+...++.+||++.+.++.||+++++++|++.|.+.+.....
T Consensus       185 y~~~~~pv~~~y~~~~~~~~IDa~~~~eeV~~~v~~~l~~~~~  227 (234)
T PLN02200        185 FNALNLPVIDYYSKKGKLYTINAVGTVDEIFEQVRPIFAACEA  227 (234)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence            9999999999999888899999999999999999999988764

>PRK14527 adenylate kinase; Provisional

Probab=100.00  E-value=3.7e-33  Score=235.98  Aligned_cols=182  Identities=26%  Similarity=0.455  Sum_probs=165.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccc
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY  140 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~  140 (273)
                      .+++.|+|+|+|||||||+|+.|++++|+.++++|++++++...+++++..+..++.+|..+|++++..++.+.+.... 
T Consensus         4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~-   82 (191)
T PRK14527          4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGME-   82 (191)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC-
Confidence            4678999999999999999999999999999999999999988889999999999999999999999999999988643 


Q ss_pred             CCcceEEEeCCCCCHHHHHHHHhh-----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHH
Q 024067          141 RGESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKE  215 (273)
Q Consensus       141 ~~~~g~IlDg~P~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~  215 (273)
                        ..+|||||||++..|++.|+..     ..++.||+|+||++++++|+.+|....            .+.||+++.+++
T Consensus        83 --~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~------------~r~dd~~~~~~~  148 (191)
T PRK14527         83 --PVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQE------------GRSDDNEETVRR  148 (191)
T ss_pred             --CCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccC------------CCCCCCHHHHHH
Confidence              2579999999999999888653     357889999999999999999997532            256888999999


Q ss_pred             HHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHH
Q 024067          216 KFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL  257 (273)
Q Consensus       216 rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l  257 (273)
                      |+..|++...|+.+||++.++++.||+++++++|+++|...|
T Consensus       149 R~~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l  190 (191)
T PRK14527        149 RQQVYREQTQPLVDYYEARGHLKRVDGLGTPDEVYARILKAL  190 (191)
T ss_pred             HHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999876

>PRK02496 adk adenylate kinase; Provisional

Probab=100.00  E-value=5.1e-33  Score=233.53  Aligned_cols=178  Identities=30%  Similarity=0.509  Sum_probs=162.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG  142 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~  142 (273)
                      +++|+|+|+|||||||+|+.|+++||++++++++++++++..++++|..++.++.+|..+|++++..++.+++.+..+  
T Consensus         1 ~~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~--   78 (184)
T PRK02496          1 MTRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDA--   78 (184)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCc--
Confidence            467999999999999999999999999999999999999988899999999999999999999999999999986543  


Q ss_pred             cceEEEeCCCCCHHHHHHHHhh-----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHH
Q 024067          143 ESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKF  217 (273)
Q Consensus       143 ~~g~IlDg~P~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl  217 (273)
                      ..||||||||++..|+..++..     ..|+++|+|+++++++.+|+..|..                .+|+++.+++|+
T Consensus        79 ~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~----------------~dd~~~~~~~r~  142 (184)
T PRK02496         79 ANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGR----------------KDDTEEVIRRRL  142 (184)
T ss_pred             cCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCC----------------CCCCHHHHHHHH
Confidence            4799999999999999888653     3689999999999999999998852                366788999999


Q ss_pred             HHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHH
Q 024067          218 RIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALH  258 (273)
Q Consensus       218 ~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~  258 (273)
                      ..|+++..++.+||++.+.++.||+++++++|+++|...|.
T Consensus       143 ~~y~~~~~~v~~~~~~~~~~~~Ida~~~~~~V~~~i~~~l~  183 (184)
T PRK02496        143 EVYREQTAPLIDYYRDRQKLLTIDGNQSVEAVTTELKAALA  183 (184)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHhC
Confidence            99999999999999988889999999999999999998773

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=100.00  E-value=6.2e-33  Score=232.41  Aligned_cols=178  Identities=25%  Similarity=0.443  Sum_probs=160.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCcc
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGES  144 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~~  144 (273)
                      .|+|+|+|||||||+|+.|++++|++||++++++++++..+++.++.+++++.+|..+|++++..++.+++...   ...
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~---~~~   77 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQAD---GSK   77 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhcc---CCC
Confidence            37899999999999999999999999999999999999888899999999999999999999999999988764   257


Q ss_pred             eEEEeCCCCCHHHHHHHHhh----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHH
Q 024067          145 GFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIY  220 (273)
Q Consensus       145 g~IlDg~P~~~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y  220 (273)
                      +|||||||++..|+..|...    ..||++|+|++|++++++|+..|....            .+.+++.+.+++|+..|
T Consensus        78 ~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~~------------~r~dd~~e~~~~r~~~y  145 (183)
T TIGR01359        78 KFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQSS------------GRVDDNIESIKKRFRTY  145 (183)
T ss_pred             cEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCccC------------CCCCCCHHHHHHHHHHH
Confidence            89999999999999887643    478999999999999999999987421            13467889999999999


Q ss_pred             HHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHH
Q 024067          221 AEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL  257 (273)
Q Consensus       221 ~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l  257 (273)
                      .+...++.+||++.+.++.||+++++++|+++|.+.|
T Consensus       146 ~~~~~~i~~~~~~~~~~~~Id~~~~~~~v~~~i~~~l  182 (183)
T TIGR01359       146 NEQTLPVIEHYENKGKVKEINAEGSVEEVFEDVEKIF  182 (183)
T ss_pred             HHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHh
Confidence            9999999999998888999999999999999999876

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=100.00  E-value=6.4e-33  Score=234.00  Aligned_cols=183  Identities=34%  Similarity=0.559  Sum_probs=166.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCcc
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGES  144 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~~  144 (273)
                      +|+|+|+|||||||+|+.|+++||+++|++++++++.+...+++++.+.+++.+|..++++++..++..++....  ...
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~--~~~   78 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPD--CKK   78 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhccc--ccC
Confidence            489999999999999999999999999999999999998888999999999999999999999999999998642  358


Q ss_pred             eEEEeCCCCCHHHHHHHHhhC----CCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCC-------CCCCCcHHHH
Q 024067          145 GFILDGIPRTRIQAEILDQIV----DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGAR-------FSAADAASAW  213 (273)
Q Consensus       145 g~IlDg~P~~~~qa~~l~~~~----~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~-------~~~~d~~e~~  213 (273)
                      +||+||||++..|++.|+...    .|+++|+|+||++++.+|+.+|..++.||..||....+       .+.+|+++.+
T Consensus        79 ~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~l~~r~dd~~~~i  158 (194)
T cd01428          79 GFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRICPVSGRVYHLGKDDVTGEPLSQRSDDNEETI  158 (194)
T ss_pred             CEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCCcCCcCCcCCCcccCCccccCCCCCHHHH
Confidence            899999999999999997654    78999999999999999999999999999999862211       1467889999


Q ss_pred             HHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHH
Q 024067          214 KEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGET  249 (273)
Q Consensus       214 ~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev  249 (273)
                      ++|+..|++...++.+||.+.++++.||+++++++|
T Consensus       159 ~~R~~~y~~~~~~i~~~~~~~~~~~~id~~~~~~~v  194 (194)
T cd01428         159 KKRLEVYKEQTAPLIDYYKKKGKLVEIDGSGDIDEV  194 (194)
T ss_pred             HHHHHHHHHhHHHHHHHHHhCCCEEEEECCCCcCcC
Confidence            999999999999999999999999999999998874

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PLN02842 nucleotide kinase

Probab=100.00  E-value=5.1e-33  Score=262.05  Aligned_cols=193  Identities=22%  Similarity=0.370  Sum_probs=175.5

Q ss_pred             EEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCcceE
Q 024067           67 VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGF  146 (273)
Q Consensus        67 vi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~~g~  146 (273)
                      .|+|+|||||||+|++|+++|+++||+++++++++++.++++|+.+++++.+|+++|++++..++.+++.+..+ ...||
T Consensus         1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~-~~~G~   79 (505)
T PLN02842          1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDA-KEKGW   79 (505)
T ss_pred             CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccc-cCCcE
Confidence            37999999999999999999999999999999999999999999999999999999999999999999986433 35789


Q ss_pred             EEeCCCCCHHHHHHHHhhC-CCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCC-----------CCCCcHHHHH
Q 024067          147 ILDGIPRTRIQAEILDQIV-DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF-----------SAADAASAWK  214 (273)
Q Consensus       147 IlDg~P~~~~qa~~l~~~~-~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~-----------~~~d~~e~~~  214 (273)
                      ||||||++..|++.|+... .||+||+|+|+++++++|+.+|..|+.||..||....++           +.||+++.++
T Consensus        80 ILDGfPRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~~~~rL~~R~DD~eE~Ik  159 (505)
T PLN02842         80 LLDGYPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEEIKARLITRPDDTEEKVK  159 (505)
T ss_pred             EEeCCCCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCccccccccccCCCCCHHHHH
Confidence            9999999999999997654 699999999999999999999999999999999765543           4688999999


Q ss_pred             HHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcCC
Q 024067          215 EKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHM  262 (273)
Q Consensus       215 ~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~~  262 (273)
                      +|+..|++...|+.++|..  .++.||+++++++|+++|.+.|.....
T Consensus       160 kRL~~Y~~~t~pIl~~Y~~--rl~~IDAsqs~EeVfeeI~~iL~~~L~  205 (505)
T PLN02842        160 ARLQIYKKNAEAILSTYSD--IMVKIDGNRPKEVVFEEISSLLSQIQK  205 (505)
T ss_pred             HHHHHHHHHhhhHHHhcCc--EEEEEECCCCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999964  588999999999999999999975543

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=100.00  E-value=2.9e-32  Score=221.99  Aligned_cols=146  Identities=38%  Similarity=0.625  Sum_probs=130.8

Q ss_pred             EEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCcceEE
Q 024067           68 LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFI  147 (273)
Q Consensus        68 i~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~~g~I  147 (273)
                      |+|||||||||+|++||++||++||++++++++++...+++|+.+++++.+|+.+|++++..++..++...  ....|||
T Consensus         1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~--~~~~g~i   78 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQP--PCNRGFI   78 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSG--GTTTEEE
T ss_pred             CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhh--cccceee
Confidence            68999999999999999999999999999999999999999999999999999999999999999999976  2479999


Q ss_pred             EeCCCCCHHHHHHHHh-----hCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHHH
Q 024067          148 LDGIPRTRIQAEILDQ-----IVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAE  222 (273)
Q Consensus       148 lDg~P~~~~qa~~l~~-----~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~  222 (273)
                      |||||++..|++.|+.     ...|+.||+|+|+++++.+|+.+                     |+++.+++|++.|++
T Consensus        79 ldGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~---------------------d~~~~i~~Rl~~y~~  137 (151)
T PF00406_consen   79 LDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ---------------------DNEEVIKKRLEEYRE  137 (151)
T ss_dssp             EESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT---------------------GSHHHHHHHHHHHHH
T ss_pred             eeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc---------------------CCHHHHHHHHHHHHH
Confidence            9999999999999976     46789999999999999999976                     346799999999999


Q ss_pred             hhHHHHHHHHhcCc
Q 024067          223 QGKSLEDYYSKQRK  236 (273)
Q Consensus       223 ~~~~l~~~y~~~~~  236 (273)
                      +..++.+||+++++
T Consensus       138 ~~~~i~~~y~~~g~  151 (151)
T PF00406_consen  138 NTEPILDYYKEQGK  151 (151)
T ss_dssp             HHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHhhcC
Confidence            99999999998763

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=100.00  E-value=2e-31  Score=222.58  Aligned_cols=172  Identities=33%  Similarity=0.613  Sum_probs=159.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~  143 (273)
                      ++|+|+|+|||||||+|+.|+++++++|||+++++|......+++++.++.++.+|+++|++++..++..++...+|.  
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~--   78 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCK--   78 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhccc--
Confidence            478999999999999999999999999999999999999988999999999999999999999999999999987553  


Q ss_pred             ceEEEeCCCCCHHHHHHHHhh-----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHH
Q 024067          144 SGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFR  218 (273)
Q Consensus       144 ~g~IlDg~P~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~  218 (273)
                      .+||+||||++..|++.|+..     ..+|.+++++++++.+++|+..|..               +.||+++.+++|+.
T Consensus        79 ~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~---------------r~dd~~~~~~~R~~  143 (178)
T COG0563          79 AGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRV---------------REDDNEETVKKRLK  143 (178)
T ss_pred             CeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccc---------------cccCCHHHHHHHHH
Confidence            399999999999999999865     4789999999999999999999864               35889999999999


Q ss_pred             HHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHH
Q 024067          219 IYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL  257 (273)
Q Consensus       219 ~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l  257 (273)
                      .|++...|+.+||.     +.||+.++++++++.|...+
T Consensus       144 ~y~~~~~pli~~y~-----~~id~~~~i~~v~~~i~~~l  177 (178)
T COG0563         144 VYHEQTAPLIEYYS-----VTIDGSGEIEEVLADILKAL  177 (178)
T ss_pred             HHHhcccchhhhhe-----eeccCCCCHHHHHHHHHHhh
Confidence            99999999999998     78999999999999998765

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=99.97  E-value=1.8e-29  Score=211.70  Aligned_cols=183  Identities=25%  Similarity=0.405  Sum_probs=161.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG  142 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~  142 (273)
                      ...|+|+|+|||||||+|+.|++++|+.++++|+++++++...++.++.++.++.+|..+|++.+...+...+.... ..
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~   81 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAAL-GT   81 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccc-Cc
Confidence            45889999999999999999999999999999999999887778889999999999999999998888888776532 24


Q ss_pred             cceEEEeCCCCCHHHHHHHHhh-CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHH
Q 024067          143 ESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYA  221 (273)
Q Consensus       143 ~~g~IlDg~P~~~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~  221 (273)
                      +.+||+||||++..|+..+... ..|+++|+|++|++++.+|+..|...            ..+.+++++.+.+|+..|.
T Consensus        82 ~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~------------~~r~d~~~~~~~~r~~~~~  149 (188)
T TIGR01360        82 SKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAET------------SGRVDDNEKTIKKRLETYY  149 (188)
T ss_pred             CCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHccccc------------CCCCCCCHHHHHHHHHHHH
Confidence            6899999999999999988643 56999999999999999999988631            1256778899999999999


Q ss_pred             HhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHH
Q 024067          222 EQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALH  258 (273)
Q Consensus       222 ~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~  258 (273)
                      +...++.++|+..+.++.||+++++++++++|...|+
T Consensus       150 ~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~  186 (188)
T TIGR01360       150 KATEPVIAYYETKGKLRKINAEGTVDDVFLQVCTAID  186 (188)
T ss_pred             HhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence            9999999999887789999999999999999999886

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK01184 hypothetical protein; Provisional

Probab=99.80  E-value=8.9e-18  Score=140.82  Aligned_cols=172  Identities=13%  Similarity=0.166  Sum_probs=119.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccC-CC-----hHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSP-RS-----ALYKQIANAVNEGKLVPEDVIFALLSKRLE  136 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~-~~-----~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~  136 (273)
                      +++|+|+|+|||||||+++ +++++|+++++++|+++++... +.     .+++.+..+...   +....+..++...+.
T Consensus         1 ~~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~i~   76 (184)
T PRK01184          1 MKIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKE---LGMDAVAKRTVPKIR   76 (184)
T ss_pred             CcEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHH---HChHHHHHHHHHHHH
Confidence            4588999999999999987 7899999999999999987632 21     255555554432   223344455555555


Q ss_pred             hcccCCcceEEEeCCCCCHHHHHHHHhhCC-CceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHH
Q 024067          137 EGYYRGESGFILDGIPRTRIQAEILDQIVD-VDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKE  215 (273)
Q Consensus       137 ~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~-~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~  215 (273)
                      .   .+...+|+||+ ++..|.+.+..... +..+|+++||++++.+|+..|....             . ..+.+.+.+
T Consensus        77 ~---~~~~~vvidg~-r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~-------------d-~~~~~~~~~  138 (184)
T PRK01184         77 E---KGDEVVVIDGV-RGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSD-------------D-PKSWEELEE  138 (184)
T ss_pred             h---cCCCcEEEeCC-CCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCC-------------C-hhhHHHHHH
Confidence            4   23577999999 78888888866544 6689999999999999998875210             0 013556666


Q ss_pred             HHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067          216 KFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ  260 (273)
Q Consensus       216 rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~  260 (273)
                      |......  .++.+++...+  +.|+.++++++++++|...+...
T Consensus       139 r~~~q~~--~~~~~~~~~ad--~vI~N~~~~~~l~~~v~~~~~~~  179 (184)
T PRK01184        139 RDERELS--WGIGEVIALAD--YMIVNDSTLEEFRARVRKLLERI  179 (184)
T ss_pred             HHHHHhc--cCHHHHHHhcC--EEEeCCCCHHHHHHHHHHHHHHH
Confidence            6654321  12445555444  44566789999999999988754

>PRK13974 thymidylate kinase; Provisional

Probab=99.79  E-value=4.4e-18  Score=146.20  Aligned_cols=175  Identities=17%  Similarity=0.151  Sum_probs=121.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeec--hhHHHHHHccCCChHHHHHHHHHH--CCCCCCHHHHHHHH--HHH--
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHIS--MGSLVRQELSPRSALYKQIANAVN--EGKLVPEDVIFALL--SKR--  134 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is--~~dllr~~~~~~~~~g~~i~~~l~--~g~~~~~~~~~~ll--~~~--  134 (273)
                      +..|+|.|++||||||+++.|++.+....+-  ..+.+....+.++++|+.|++++.  .|...++.....++  .++  
T Consensus         3 g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~~   82 (212)
T PRK13974          3 GKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRAQ   82 (212)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHHH
Confidence            6799999999999999999999998532110  011222223457889999999986  33344444433322  111  


Q ss_pred             -----HHhcccCCcceEEE-----------eCCCCCHHH--HHHHHhh----CCCceEEEEccCHHHHHHHHhcCCcCCC
Q 024067          135 -----LEEGYYRGESGFIL-----------DGIPRTRIQ--AEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFSP  192 (273)
Q Consensus       135 -----l~~~~~~~~~g~Il-----------Dg~P~~~~q--a~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~  192 (273)
                           +... .. ...+||           +|+|++..+  ...++..    ..||++|+|+||++++.+|+.+|..   
T Consensus        83 ~~~~~i~~~-l~-~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R~d---  157 (212)
T PRK13974         83 HVSKIIRPA-LE-NGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNRKP---  157 (212)
T ss_pred             HHHHHHHHH-HH-CCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccc---
Confidence                 1111 11 122555           677876443  4444432    3699999999999999999987642   


Q ss_pred             cccccccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067          193 HKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ  260 (273)
Q Consensus       193 ~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~  260 (273)
                                     |   .++++...|.+...+..++|.+.+.++.||+++++++|+++|...|...
T Consensus       158 ---------------D---~~e~~~~~y~~~v~~~y~~y~~~~~~~~Ida~~~~eeV~~~I~~~l~~~  207 (212)
T PRK13974        158 ---------------D---RIEAEGIEFLERVAEGFALIAEERNWKVISADQSIETISNEIKETLLNN  207 (212)
T ss_pred             ---------------C---chhhhhHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHHH
Confidence                           2   2456677888888888889988889999999999999999999998753

>PRK03839 putative kinase; Provisional

Probab=99.77  E-value=1.3e-17  Score=139.43  Aligned_cols=153  Identities=18%  Similarity=0.244  Sum_probs=102.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~  143 (273)
                      ++|+|+|+|||||||+++.||++++++|+++|+++++..     +++....   .+     +..+..+...+...  ...
T Consensus         1 m~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~~-----~~~~~~~---~~-----~~~~~~l~~~~~~~--~~~   65 (180)
T PRK03839          1 MIIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKKG-----IGEEKDD---EM-----EIDFDKLAYFIEEE--FKE   65 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhcC-----CcccCCh---hh-----hcCHHHHHHHHHHh--ccC
Confidence            369999999999999999999999999999999987531     1111000   01     12233344444332  124


Q ss_pred             ceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHh
Q 024067          144 SGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQ  223 (273)
Q Consensus       144 ~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~~  223 (273)
                      .+||+||+...         ...++++|+|+++.+++.+|+..|....               .+..+.+.+++   .+ 
T Consensus        66 ~~vIidG~~~~---------l~~~~~vi~L~~~~~~~~~Rl~~R~~~~---------------~~~~~~~~~~~---~~-  117 (180)
T PRK03839         66 KNVVLDGHLSH---------LLPVDYVIVLRAHPKIIKERLKERGYSK---------------KKILENVEAEL---VD-  117 (180)
T ss_pred             CCEEEEecccc---------ccCCCEEEEEECCHHHHHHHHHHcCCCH---------------HHHHHHHHHHH---HH-
Confidence            67999997532         2468999999999999999998875311               00011111211   11 


Q ss_pred             hHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHHHHhc
Q 024067          224 GKSLEDYYSKQRKLLNFQVA-AAPGETWQGLLSALHLQ  260 (273)
Q Consensus       224 ~~~l~~~y~~~~~~~~id~~-~s~~ev~~~I~~~l~~~  260 (273)
                       .++.++|.....++.||++ .++++++++|.+.+...
T Consensus       118 -~~~~~~~~~r~~~~~Id~~~~s~eev~~~I~~~l~~~  154 (180)
T PRK03839        118 -VCLCEALEEKEKVIEVDTTGKTPEEVVEEILELIKSG  154 (180)
T ss_pred             -HHHHHHHHhcCCEEEEECCCCCHHHHHHHHHHHHhcC
Confidence             1234566666778999996 59999999999999865

>PRK08356 hypothetical protein; Provisional

Probab=99.76  E-value=1.7e-17  Score=140.75  Aligned_cols=173  Identities=14%  Similarity=0.110  Sum_probs=110.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHcc----CCC---hHHHH----HHHHHHCCCCCCH----HHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS----PRS---ALYKQ----IANAVNEGKLVPE----DVI  127 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~----~~~---~~g~~----i~~~l~~g~~~~~----~~~  127 (273)
                      .+.|+|+|||||||||+|+.|+ ++|+++|++++.++....    ...   ..+..    ..++++.|..+++    +++
T Consensus         5 ~~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~~   83 (195)
T PRK08356          5 KMIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDIL   83 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHHH
Confidence            4679999999999999999996 589999999986543222    111   22211    2455666666663    566


Q ss_pred             HHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCC
Q 024067          128 FALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAA  207 (273)
Q Consensus       128 ~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~  207 (273)
                      ..++.+.+..     ...|++||+ ++..|++.|...  ...+|+|+++.+++.+|+..|....           ++. .
T Consensus        84 ~~~~~~~~~~-----~~~ividG~-r~~~q~~~l~~~--~~~vi~l~~~~~~~~~Rl~~R~~~~-----------~~~-~  143 (195)
T PRK08356         84 IRLAVDKKRN-----CKNIAIDGV-RSRGEVEAIKRM--GGKVIYVEAKPEIRFERLRRRGAEK-----------DKG-I  143 (195)
T ss_pred             HHHHHHHhcc-----CCeEEEcCc-CCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHhcCCcc-----------ccc-c
Confidence            6666565532     235999999 999999988753  2479999999999999999887432           000 1


Q ss_pred             CcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067          208 DAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL  259 (273)
Q Consensus       208 d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~  259 (273)
                      .+.+.++++.. .+.......++....+ ++.+| +++.++++++|..++..
T Consensus       144 ~~~e~~~~~~~-~~~~l~~~~~~~~~aD-~vI~N-~~~~e~~~~~i~~~~~~  192 (195)
T PRK08356        144 KSFEDFLKFDE-WEEKLYHTTKLKDKAD-FVIVN-EGTLEELRKKVEEILRE  192 (195)
T ss_pred             ccHHHHHHHHH-HHHHhhhhhhHHHhCc-EEEEC-CCCHHHHHHHHHHHHHH
Confidence            12333333221 1111111122222233 33344 68999999999998864

>PRK13973 thymidylate kinase; Provisional

Probab=99.76  E-value=3e-17  Score=141.15  Aligned_cols=174  Identities=13%  Similarity=0.132  Sum_probs=112.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh---CCCeechhHHHHHHccCCChHHHHHHHHHHCC--CCCC------------H
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEG--KLVP------------E  124 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~---g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g--~~~~------------~  124 (273)
                      +++.|+|.|++||||||+++.|++++   |..++.+      ..+.+++.|+.+++++..+  ..+.            .
T Consensus         2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~------~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a~r~   75 (213)
T PRK13973          2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT------REPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAAARD   75 (213)
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE------ECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHHHHH
Confidence            36899999999999999999999999   7777755      1122344555555554432  1111            1


Q ss_pred             HHHHHHHHHHHHhcccCCcceEEEeCC----------CCC--HHHHHHHHhh----CCCceEEEEccCHHHHHHHHhcCC
Q 024067          125 DVIFALLSKRLEEGYYRGESGFILDGI----------PRT--RIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESE  188 (273)
Q Consensus       125 ~~~~~ll~~~l~~~~~~~~~g~IlDg~----------P~~--~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~  188 (273)
                      +.+...+...+..+     .-+|.|.|          ++.  ..+...|+..    ..||++|+|+||++++.+|+..|.
T Consensus        76 ~~~~~~i~~~l~~g-----~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~  150 (213)
T PRK13973         76 DHVEEVIRPALARG-----KIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRR  150 (213)
T ss_pred             HHHHHHHHHHHHCC-----CEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence            23334455555543     34455644          432  2345555432    369999999999999999999886


Q ss_pred             cCCCcccccccCCCCCCCC-CcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcCC
Q 024067          189 AFSPHKEFLRLGGARFSAA-DAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHM  262 (273)
Q Consensus       189 ~~~~~~~~y~~~~~~~~~~-d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~~  262 (273)
                      ....          ..+.+ ++.+.++++.+.|.+..    ++|.  ++++.||+++++++|+++|...+.....
T Consensus       151 ~~~~----------~~~~e~~~~~~~~~~~~~y~~l~----~~~~--~~~~~Ida~~~~e~V~~~I~~~i~~~~~  209 (213)
T PRK13973        151 GSDT----------PDRFEKEDLAFHEKRREAFLQIA----AQEP--ERCVVIDATASPEAVAAEIWAAVDQRLL  209 (213)
T ss_pred             CCCc----------cCchhhchHHHHHHHHHHHHHHH----HhCC--CcEEEEcCCCCHHHHHHHHHHHHHHHHh
Confidence            3210          00112 34456666677776533    2232  3588999999999999999999986543

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=99.73  E-value=9.6e-17  Score=131.91  Aligned_cols=160  Identities=19%  Similarity=0.220  Sum_probs=107.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHhcccC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE-GKLVPEDVIFALLSKRLEEGYYR  141 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~-g~~~~~~~~~~ll~~~l~~~~~~  141 (273)
                      .+.|+|+|+|||||||+++.||+.++++++|+|.++.+.      .++.|.+++.. |+....+...+++.+.+...   
T Consensus         2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~------~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~---   72 (172)
T COG0703           2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKR------TGMSIAEIFEEEGEEGFRRLETEVLKELLEED---   72 (172)
T ss_pred             CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHH------HCcCHHHHHHHHhHHHHHHHHHHHHHHHhhcC---
Confidence            467999999999999999999999999999999999874      44567777764 65555566666666655542   


Q ss_pred             CcceEEEeC--CCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcH-----HHHH
Q 024067          142 GESGFILDG--IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAA-----SAWK  214 (273)
Q Consensus       142 ~~~g~IlDg--~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~-----e~~~  214 (273)
                        ..+|-.|  ...+.+....|..   -..+|||+++.+++++|+......            |...+.++     +.+.
T Consensus        73 --~~ViaTGGG~v~~~enr~~l~~---~g~vv~L~~~~e~l~~Rl~~~~~R------------Pll~~~~~~~~l~~L~~  135 (172)
T COG0703          73 --NAVIATGGGAVLSEENRNLLKK---RGIVVYLDAPFETLYERLQRDRKR------------PLLQTEDPREELEELLE  135 (172)
T ss_pred             --CeEEECCCccccCHHHHHHHHh---CCeEEEEeCCHHHHHHHhccccCC------------CcccCCChHHHHHHHHH
Confidence              2333333  2333444444443   338999999999999999844322            22222222     3333


Q ss_pred             HHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067          215 EKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ  260 (273)
Q Consensus       215 ~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~  260 (273)
                      +|..           .|++.. .+.++++...+++.++|...|...
T Consensus       136 ~R~~-----------~Y~e~a-~~~~~~~~~~~~v~~~i~~~l~~~  169 (172)
T COG0703         136 ERQP-----------LYREVA-DFIIDTDDRSEEVVEEILEALEGS  169 (172)
T ss_pred             HHHH-----------HHHHhC-cEEecCCCCcHHHHHHHHHHHHHh
Confidence            3433           344432 356777766699999999888654

>PRK13949 shikimate kinase; Provisional

Probab=99.72  E-value=6.2e-16  Score=128.32  Aligned_cols=163  Identities=14%  Similarity=0.228  Sum_probs=104.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHhcccCC
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAV-NEGKLVPEDVIFALLSKRLEEGYYRG  142 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l-~~g~~~~~~~~~~ll~~~l~~~~~~~  142 (273)
                      .+|+|+|+|||||||+++.||+.++++++++|.++++...      ..+.+++ ..|.....+....++.+ +..     
T Consensus         2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~------~~~~~~~~~~g~~~fr~~e~~~l~~-l~~-----   69 (169)
T PRK13949          2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFH------KTVGDIFAERGEAVFRELERNMLHE-VAE-----   69 (169)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHC------ccHHHHHHHhCHHHHHHHHHHHHHH-HHh-----
Confidence            4799999999999999999999999999999998876432      2333433 23444444555555554 332     


Q ss_pred             cceEEE-e--CCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHH
Q 024067          143 ESGFIL-D--GIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRI  219 (273)
Q Consensus       143 ~~g~Il-D--g~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~  219 (273)
                      ..++|+ +  |+|....+.+.|..   .+++|+|++|.+++++|+..+...           .|.-.+...+.+.+.+  
T Consensus        70 ~~~~vis~Ggg~~~~~~~~~~l~~---~~~vi~L~~~~~~~~~Ri~~~~~~-----------RP~~~~~~~~~~~~~i--  133 (169)
T PRK13949         70 FEDVVISTGGGAPCFFDNMELMNA---SGTTVYLKVSPEVLFVRLRLAKQQ-----------RPLLKGKSDEELLDFI--  133 (169)
T ss_pred             CCCEEEEcCCcccCCHHHHHHHHh---CCeEEEEECCHHHHHHHHhcCCCC-----------CCCCCCCChHHHHHHH--
Confidence            245666 4  45666766776653   468999999999999999753211           1111122222232222  


Q ss_pred             HHHhhHHHHHHHHhcCcEEEEeCCC-ChhHHHHHHHHHH
Q 024067          220 YAEQGKSLEDYYSKQRKLLNFQVAA-APGETWQGLLSAL  257 (273)
Q Consensus       220 y~~~~~~l~~~y~~~~~~~~id~~~-s~~ev~~~I~~~l  257 (273)
                       ++.......+|++.+  +.||+++ +++++++.|.+.|
T Consensus       134 -~~l~~~R~~~Y~~ad--~~id~~~~~~~e~~~~I~~~~  169 (169)
T PRK13949        134 -IEALEKRAPFYRQAK--IIFNADKLEDESQIEQLVQRL  169 (169)
T ss_pred             -HHHHHHHHHHHHhCC--EEEECCCCCHHHHHHHHHHhC
Confidence             222333445677754  5567654 8999999988753

>PRK06217 hypothetical protein; Validated

Probab=99.72  E-value=4.4e-16  Score=130.70  Aligned_cols=172  Identities=16%  Similarity=0.143  Sum_probs=109.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG  142 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~  142 (273)
                      +++|+|+|+|||||||+|+.|++.+|++++++|++++..  .+.+.+          ...+.+.....+.+.+..     
T Consensus         1 ~~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~--~~~~~~----------~~~~~~~~~~~~~~~~~~-----   63 (183)
T PRK06217          1 MMRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLP--TDPPFT----------TKRPPEERLRLLLEDLRP-----   63 (183)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeecc--CCCCcc----------ccCCHHHHHHHHHHHHhc-----
Confidence            468999999999999999999999999999999988742  111111          123445555555555533     


Q ss_pred             cceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHHH
Q 024067          143 ESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAE  222 (273)
Q Consensus       143 ~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~  222 (273)
                      ..+|||||++....  +.+  ...+|.+|+|++|.++++.|+..|.... .|+.  . ......+.....+.++...|..
T Consensus        64 ~~~~vi~G~~~~~~--~~~--~~~~d~~i~Ld~~~~~~~~Rl~~R~~~~-~~~~--~-~~~~~~e~~~~~~~~~~~~~~~  135 (183)
T PRK06217         64 REGWVLSGSALGWG--DPL--EPLFDLVVFLTIPPELRLERLRLREFQR-YGNR--I-LPGGDMHKASLEFLEWAASYDT  135 (183)
T ss_pred             CCCEEEEccHHHHH--HHH--HhhCCEEEEEECCHHHHHHHHHcCcccc-cCcc--c-CCCCCHHHHHHHHHHHHHhccC
Confidence            36799999986422  222  1357899999999999999999987532 1110  0 0000001111223444334432


Q ss_pred             ------hhHHHHHHHHhc-CcEEEEeCCCChhHHHHHHHHHHHh
Q 024067          223 ------QGKSLEDYYSKQ-RKLLNFQVAAAPGETWQGLLSALHL  259 (273)
Q Consensus       223 ------~~~~l~~~y~~~-~~~~~id~~~s~~ev~~~I~~~l~~  259 (273)
                            .......++... ..++.+++..+++++.+.|...|.+
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~i~~~~~~  179 (183)
T PRK06217        136 AGPEGRSLAAHEQWLADQSCPVLRLDGDLTVEDLLDEVLDHLAS  179 (183)
T ss_pred             CCCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHHhc
Confidence                  111122233322 4678889999999999999999864

>PRK08233 hypothetical protein; Provisional

Probab=99.68  E-value=1e-15  Score=127.55  Aligned_cols=171  Identities=13%  Similarity=0.150  Sum_probs=101.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG  142 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~  142 (273)
                      ++.|+|.|+|||||||+|+.|++.++...+...|..+....     ...+...+..|..+ +......+.+.+.......
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~   76 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNC-----PEDICKWIDKGANY-SEWVLTPLIKDIQELIAKS   76 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccC-----chhhhhhhhccCCh-hhhhhHHHHHHHHHHHcCC
Confidence            57889999999999999999999996433322233322111     12333444445443 2223333333343221111


Q ss_pred             cceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHHH
Q 024067          143 ESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAE  222 (273)
Q Consensus       143 ~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~  222 (273)
                      ...+|+..+|......+. .  ..+|++|+|++|.+++++|+..|....                ++.+.+.+++..|..
T Consensus        77 ~~~~vivd~~~~~~~~~~-~--~~~d~~i~l~~~~~~~~~R~~~R~~~~----------------~~~~~~~~~~~~~~~  137 (182)
T PRK08233         77 NVDYIIVDYPFAYLNSEM-R--QFIDVTIFIDTPLDIAMARRILRDFKE----------------DTGNEIHNDLKHYLN  137 (182)
T ss_pred             CceEEEEeeehhhccHHH-H--HHcCEEEEEcCCHHHHHHHHHHHHhhh----------------ccccchhhHHHHHHH
Confidence            235555555654333221 1  247899999999999999988775311                112245566666665


Q ss_pred             hhHHHHHHHH---h--cCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067          223 QGKSLEDYYS---K--QRKLLNFQVAAAPGETWQGLLSALHLQ  260 (273)
Q Consensus       223 ~~~~l~~~y~---~--~~~~~~id~~~s~~ev~~~I~~~l~~~  260 (273)
                      ...+.  |++   .  ....+.||++.++++++++|...|..+
T Consensus       138 ~~~~~--y~~~~~~~~~~~~~vId~~~~~e~i~~~i~~~l~~~  178 (182)
T PRK08233        138 YARPL--YLEALHTVKPNADIVLDGALSVEEIINQIEEELYRR  178 (182)
T ss_pred             HHHHH--HHHHhhcCccCCeEEEcCCCCHHHHHHHHHHHHHhC
Confidence            55443  222   1  123677999999999999999998865

>PRK13975 thymidylate kinase; Provisional

Probab=99.67  E-value=1.3e-14  Score=122.60  Aligned_cols=173  Identities=14%  Similarity=0.141  Sum_probs=107.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHH-HH------HH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALL-SK------RL  135 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll-~~------~l  135 (273)
                      ++.|+|.|++||||||+++.|+++++..+..        .+.++..|+.+++++..+. .....+..+. ..      .+
T Consensus         2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~--------~~~~~~~g~~ir~~~~~~~-~~~~~~~~~f~~~r~~~~~~i   72 (196)
T PRK13975          2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTC--------EPTDGKIGKLIREILSGSK-CDKETLALLFAADRVEHVKEI   72 (196)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeeE--------CCCCChHHHHHHHHHccCC-CCHHHHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999999853211        1233556778888776553 2222211111 11      12


Q ss_pred             HhcccCCcceEEEeCCCCCH--HH---------HHHHHh-hCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCC
Q 024067          136 EEGYYRGESGFILDGIPRTR--IQ---------AEILDQ-IVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGAR  203 (273)
Q Consensus       136 ~~~~~~~~~g~IlDg~P~~~--~q---------a~~l~~-~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~  203 (273)
                      ... . ....+|+|.|..+.  .|         ...+.. ...||++|+|+++++++.+|+..|...             
T Consensus        73 ~~~-~-~~~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~~~-------------  137 (196)
T PRK13975         73 EED-L-KKRDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRDKE-------------  137 (196)
T ss_pred             HHH-H-cCCEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccCcc-------------
Confidence            211 1 13568999775431  11         111221 246999999999999999999887521             


Q ss_pred             CCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHHHHhcCCC
Q 024067          204 FSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVA-AAPGETWQGLLSALHLQHMN  263 (273)
Q Consensus       204 ~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~-~s~~ev~~~I~~~l~~~~~~  263 (273)
                        ..++.+.+++....|.+...  .+.|.....++.||++ .++++++++|...|..+..+
T Consensus       138 --~~~~~~~~~~~~~~y~~~~~--~~~~~~~~~~~~Id~~~~~~eev~~~I~~~i~~~~~~  194 (196)
T PRK13975        138 --IFEKKEFLKKVQEKYLELAN--NEKFMPKYGFIVIDTTNKSIEEVFNEILNKIKDKIPD  194 (196)
T ss_pred             --ccchHHHHHHHHHHHHHHHh--hcccCCcCCEEEEECCCCCHHHHHHHHHHHHHHhCCc
Confidence              01223344444555655433  2222223357899986 79999999999999876543

>PLN02924 thymidylate kinase

Probab=99.66  E-value=9.6e-15  Score=126.10  Aligned_cols=175  Identities=14%  Similarity=0.162  Sum_probs=112.4

Q ss_pred             cCCCCCCCCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHH----
Q 024067           53 LDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIF----  128 (273)
Q Consensus        53 ~~~~~~~~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~----  128 (273)
                      +++++..+.+++.|+|.|++||||||+++.|++.++...+.+ .+++ +...++..|+.+++++..+..+......    
T Consensus         6 ~~~~~~~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v-~~~~-ep~~~~~~g~~ir~~l~~~~~~~~~~~~llf~   83 (220)
T PLN02924          6 METESSVESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA-ELWR-FPDRTTSVGQMISAYLSNKSQLDDRAIHLLFS   83 (220)
T ss_pred             cCCCCCcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc-eeee-CCCCCChHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence            355555566889999999999999999999999997665554 2222 3334688999999998876544433221    


Q ss_pred             -------HHHHHHHHhcccCCcceEEEeCCCCC--HHHH---------HHHHh-hCCCceEEEEccCHHHHHHHHhcCCc
Q 024067          129 -------ALLSKRLEEGYYRGESGFILDGIPRT--RIQA---------EILDQ-IVDVDLVINFKSIEDQLVKRNLESEA  189 (273)
Q Consensus       129 -------~ll~~~l~~~~~~~~~g~IlDg~P~~--~~qa---------~~l~~-~~~~d~vI~L~~~~e~l~~Rl~~R~~  189 (273)
                             ..+...+.     .+..+|.|.|..+  ..|.         ..+.. ...||++|+|++|++++.+|...+. 
T Consensus        84 adR~~~~~~I~pal~-----~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~~-  157 (220)
T PLN02924         84 ANRWEKRSLMERKLK-----SGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYGG-  157 (220)
T ss_pred             HHHHHHHHHHHHHHH-----CCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCc-
Confidence                   11222222     2467899987653  1121         11211 2369999999999999999864211 


Q ss_pred             CCCcccccccCCCCCCCCCcHHHHHHHHH-HHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067          190 FSPHKEFLRLGGARFSAADAASAWKEKFR-IYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ  260 (273)
Q Consensus       190 ~~~~~~~y~~~~~~~~~~d~~e~~~~rl~-~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~  260 (273)
                      +.               -++. .+.++++ .|.+.    .+     ..++.||++.++++|.++|.+.+...
T Consensus       158 ~~---------------~E~~-~~~~rv~~~Y~~l----a~-----~~~~vIDa~~sieeV~~~I~~~I~~~  204 (220)
T PLN02924        158 ER---------------YEKL-EFQKKVAKRFQTL----RD-----SSWKIIDASQSIEEVEKKIREVVLDT  204 (220)
T ss_pred             cc---------------cccH-HHHHHHHHHHHHH----hh-----cCEEEECCCCCHHHHHHHHHHHHHHH
Confidence            00               0112 2233332 23221    11     35788999999999999999988764

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=99.64  E-value=8.8e-16  Score=138.22  Aligned_cols=165  Identities=14%  Similarity=0.105  Sum_probs=105.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh-CCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~-g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~  141 (273)
                      +..|+++|+|||||||+|+.|++++ ++.+|+.|++ ++.+......+..  .+...+...-.+.....+...+..    
T Consensus         2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~-r~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~----   74 (300)
T PHA02530          2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDL-RQSLFGHGEWGEY--KFTKEKEDLVTKAQEAAALAALKS----   74 (300)
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHH-HHHhcCCCccccc--ccChHHHHHHHHHHHHHHHHHHHc----
Confidence            4678899999999999999999999 8999999765 4443322111100  000000000011222333333332    


Q ss_pred             CcceEEEeCCCCCHHHHHHHHhh---CCCc-eEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHH
Q 024067          142 GESGFILDGIPRTRIQAEILDQI---VDVD-LVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKF  217 (273)
Q Consensus       142 ~~~g~IlDg~P~~~~qa~~l~~~---~~~d-~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl  217 (273)
                       +.++|+|+++.+..+...+...   .... .+|+|+++.+++.+|+.+|..+.             -+.+..+...+|+
T Consensus        75 -g~~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~-------------~~~~~i~~~~~~~  140 (300)
T PHA02530         75 -GKSVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRGERA-------------VPEDVLRSMFKQM  140 (300)
T ss_pred             -CCeEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccCcCC-------------CCHHHHHHHHHHH
Confidence             4779999999998888776543   2233 37999999999999999995332             1122233334778


Q ss_pred             HHHHHhhHHHHHHHHhcCcEEEEeCCCChhH
Q 024067          218 RIYAEQGKSLEDYYSKQRKLLNFQVAAAPGE  248 (273)
Q Consensus       218 ~~y~~~~~~l~~~y~~~~~~~~id~~~s~~e  248 (273)
                      +.|.+...|+...|....+++.+|.++++.+
T Consensus       141 ~~~~~~~~p~~~~~~~~~~~~~~D~dgtl~~  171 (300)
T PHA02530        141 KEYRGLVWPVYTADPGLPKAVIFDIDGTLAK  171 (300)
T ss_pred             HHhcCCCCceeccCCCCCCEEEEECCCcCcC
Confidence            8888877888666655556788888777654

>PRK13948 shikimate kinase; Provisional

Probab=99.62  E-value=2.6e-14  Score=119.90  Aligned_cols=162  Identities=12%  Similarity=0.075  Sum_probs=102.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhccc
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYY  140 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~-~g~~~~~~~~~~ll~~~l~~~~~  140 (273)
                      ++..|+|+|+|||||||+++.||+++|.++|++|.++++.      .|..+.+++. .|+....+....++.+.+..   
T Consensus         9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~------~g~si~~if~~~Ge~~fR~~E~~~l~~l~~~---   79 (182)
T PRK13948          9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERV------TGKSIPEIFRHLGEAYFRRCEAEVVRRLTRL---   79 (182)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHH------HhCCHHHHHHHhCHHHHHHHHHHHHHHHHhc---
Confidence            5678999999999999999999999999999999888764      3344555553 35444444455555444332   


Q ss_pred             CCcceEEEe---CCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHH
Q 024067          141 RGESGFILD---GIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKF  217 (273)
Q Consensus       141 ~~~~g~IlD---g~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl  217 (273)
                         .+.||.   |.+........|.+   -..+|+|+++.+++.+|+..+.             .|.-.+.+.   .+++
T Consensus        80 ---~~~VIa~GgG~v~~~~n~~~l~~---~g~vV~L~~~~e~l~~Rl~~~~-------------RPll~~~~~---~~~l  137 (182)
T PRK13948         80 ---DYAVISLGGGTFMHEENRRKLLS---RGPVVVLWASPETIYERTRPGD-------------RPLLQVEDP---LGRI  137 (182)
T ss_pred             ---CCeEEECCCcEEcCHHHHHHHHc---CCeEEEEECCHHHHHHHhcCCC-------------CCCCCCCCh---HHHH
Confidence               334443   34444444444443   3569999999999999994321             111111111   1222


Q ss_pred             HHHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHHHHh
Q 024067          218 RIYAEQGKSLEDYYSKQRKLLNFQVA-AAPGETWQGLLSALHL  259 (273)
Q Consensus       218 ~~y~~~~~~l~~~y~~~~~~~~id~~-~s~~ev~~~I~~~l~~  259 (273)
                      ..   .......+|+..+  +.||++ .+++++.++|...+..
T Consensus       138 ~~---l~~~R~~~Y~~a~--~~i~t~~~~~~ei~~~i~~~l~~  175 (182)
T PRK13948        138 RT---LLNEREPVYRQAT--IHVSTDGRRSEEVVEEIVEKLWA  175 (182)
T ss_pred             HH---HHHHHHHHHHhCC--EEEECCCCCHHHHHHHHHHHHHH
Confidence            22   2223345676543  445654 6899999999999876

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=99.62  E-value=3.9e-14  Score=120.90  Aligned_cols=178  Identities=16%  Similarity=0.186  Sum_probs=112.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCC-CCCCHHHHH--------HHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEG-KLVPEDVIF--------ALLS  132 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g-~~~~~~~~~--------~ll~  132 (273)
                      +++.|+|.|..||||||+++.|++.+.-..+++   +....+.++++|+.|++++.++ ..+......        ..+.
T Consensus         2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v---~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~   78 (208)
T COG0125           2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKV---VLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLE   78 (208)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeE---EEEeCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHH
Confidence            588999999999999999999999995443321   2224466799999999999886 334332221        1122


Q ss_pred             HHHHhcccCCcceEEEeCCCCC--HHH----------HHHHHhh-C---CCceEEEEccCHHHHHHHHhcCCcCCCcccc
Q 024067          133 KRLEEGYYRGESGFILDGIPRT--RIQ----------AEILDQI-V---DVDLVINFKSIEDQLVKRNLESEAFSPHKEF  196 (273)
Q Consensus       133 ~~l~~~~~~~~~g~IlDg~P~~--~~q----------a~~l~~~-~---~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~  196 (273)
                      +.+... ...+.-+|.|.|-.+  ..|          ...+.++ .   .||++|+|++++++.++|+.+|+...  .  
T Consensus        79 ~~i~pa-l~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~~--~--  153 (208)
T COG0125          79 EVIKPA-LKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGELR--D--  153 (208)
T ss_pred             HHHHHh-hcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCcc--c--
Confidence            222221 122456788876543  223          2222222 2   69999999999999999999987531  0  


Q ss_pred             cccCCCCCCCCCcHHHHHHH-HHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcC
Q 024067          197 LRLGGARFSAADAASAWKEK-FRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQH  261 (273)
Q Consensus       197 y~~~~~~~~~~d~~e~~~~r-l~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~  261 (273)
                              +.+.....+.++ .+.|.+    +.+.+.  +.+++||++.++++|.++|...|....
T Consensus       154 --------r~E~~~~~f~~kvr~~Y~~----la~~~~--~r~~vIda~~~~e~v~~~i~~~l~~~l  205 (208)
T COG0125         154 --------RFEKEDDEFLEKVREGYLE----LAAKFP--ERIIVIDASRPLEEVHEEILKILKERL  205 (208)
T ss_pred             --------hhhhHHHHHHHHHHHHHHH----HHhhCC--CeEEEEECCCCHHHHHHHHHHHHHHhh
Confidence                    111111112222 233332    222221  258999999999999999999987654

>PRK13947 shikimate kinase; Provisional

Probab=99.61  E-value=2e-14  Score=118.89  Aligned_cols=163  Identities=16%  Similarity=0.190  Sum_probs=94.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhcccCC
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYRG  142 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~-~g~~~~~~~~~~ll~~~l~~~~~~~  142 (273)
                      ..|+|+|+|||||||+|+.||+++|+++++.|.++++.. +     ..+.+++. .|+....+....++.. +..     
T Consensus         2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~-g-----~~~~~~~~~~ge~~~~~~e~~~~~~-l~~-----   69 (171)
T PRK13947          2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMT-G-----MTVAEIFEKDGEVRFRSEEKLLVKK-LAR-----   69 (171)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhc-C-----CcHHHHHHHhChHHHHHHHHHHHHH-Hhh-----
Confidence            469999999999999999999999999999998876542 1     22223332 2322222222333332 221     


Q ss_pred             cceEEEe-C--CCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHH
Q 024067          143 ESGFILD-G--IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRI  219 (273)
Q Consensus       143 ~~g~IlD-g--~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~  219 (273)
                      ..++|+. |  ++....+...|.+   .+++|+|+++++.+.+|+..|...+..           ...+..+.+.   +.
T Consensus        70 ~~~~vi~~g~g~vl~~~~~~~l~~---~~~vv~L~~~~~~l~~Rl~~r~~rp~~-----------~~~~~~~~i~---~~  132 (171)
T PRK13947         70 LKNLVIATGGGVVLNPENVVQLRK---NGVVICLKARPEVILRRVGKKKSRPLL-----------MVGDPEERIK---EL  132 (171)
T ss_pred             cCCeEEECCCCCcCCHHHHHHHHh---CCEEEEEECCHHHHHHHhcCCCCCCCC-----------CCCChHHHHH---HH
Confidence            1234332 2  3333344444443   357999999999999999876432200           0111111222   12


Q ss_pred             HHHhhHHHHHHHHhcCcEEEEe-CCCChhHHHHHHHH-HHHhcC
Q 024067          220 YAEQGKSLEDYYSKQRKLLNFQ-VAAAPGETWQGLLS-ALHLQH  261 (273)
Q Consensus       220 y~~~~~~l~~~y~~~~~~~~id-~~~s~~ev~~~I~~-~l~~~~  261 (273)
                      |.    ....+|...+  +.|| ++.+++++.+.|.. .+..++
T Consensus       133 ~~----~r~~~y~~ad--~~Idt~~~~~~~i~~~I~~~~~~~~~  170 (171)
T PRK13947        133 LK----EREPFYDFAD--YTIDTGDMTIDEVAEEIIKAYLKLKN  170 (171)
T ss_pred             HH----HHHHHHHhcC--EEEECCCCCHHHHHHHHHHHHHhhhc
Confidence            22    1234555433  4455 45799999999999 665543

>PRK08118 topology modulation protein; Reviewed

Probab=99.61  E-value=9.8e-15  Score=120.91  Aligned_cols=100  Identities=21%  Similarity=0.251  Sum_probs=75.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG  142 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~  142 (273)
                      +++|+|+|+|||||||+|+.|++.++++++++|++++..                ....++++....++.+.+.      
T Consensus         1 m~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~----------------~w~~~~~~~~~~~~~~~~~------   58 (167)
T PRK08118          1 MKKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKP----------------NWEGVPKEEQITVQNELVK------   58 (167)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhccc----------------CCcCCCHHHHHHHHHHHhc------
Confidence            358999999999999999999999999999999988631                1123455555555555443      


Q ss_pred             cceEEEeCCCC-CHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCc
Q 024067          143 ESGFILDGIPR-TRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA  189 (273)
Q Consensus       143 ~~g~IlDg~P~-~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~  189 (273)
                      ..+||+||.+. +..  ..+   ..+|.+|+|++|.++++.|+..|..
T Consensus        59 ~~~wVidG~~~~~~~--~~l---~~~d~vi~Ld~p~~~~~~R~~~R~~  101 (167)
T PRK08118         59 EDEWIIDGNYGGTMD--IRL---NAADTIIFLDIPRTICLYRAFKRRV  101 (167)
T ss_pred             CCCEEEeCCcchHHH--HHH---HhCCEEEEEeCCHHHHHHHHHHHHH
Confidence            25799999543 432  222   2589999999999999999988854

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=99.60  E-value=2.3e-14  Score=118.58  Aligned_cols=162  Identities=17%  Similarity=0.170  Sum_probs=95.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhcccCC
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYRG  142 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~-~g~~~~~~~~~~ll~~~l~~~~~~~  142 (273)
                      ..|+|+|+|||||||+++.||+++|+++++.|.++.....      ..+.+++. .|.....+...+++ ..+.      
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g------~~~~~~~~~~g~~~~~~~e~~~~-~~~~------   69 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSN------MTVAEIVEREGWAGFRARESAAL-EAVT------   69 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhC------CCHHHHHHHHCHHHHHHHHHHHH-HHhc------
Confidence            4688999999999999999999999999999988865431      22223332 22111112222333 2222      


Q ss_pred             cceEEEe-C--CCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCC-CCCcHHHHHHHHH
Q 024067          143 ESGFILD-G--IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFS-AADAASAWKEKFR  218 (273)
Q Consensus       143 ~~g~IlD-g--~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~-~~d~~e~~~~rl~  218 (273)
                      ...+|+. |  ++....+...|.   ..+++|+|+++++++.+|+..|....  ++   +...... .++..+.+++|  
T Consensus        70 ~~~~vi~~ggg~vl~~~~~~~l~---~~~~~v~l~~~~~~~~~Rl~~r~~~~--~r---p~~~~~~~~~~~~~~~~~r--  139 (171)
T PRK03731         70 APSTVIATGGGIILTEENRHFMR---NNGIVIYLCAPVSVLANRLEANPEED--QR---PTLTGKPISEEVAEVLAER--  139 (171)
T ss_pred             CCCeEEECCCCccCCHHHHHHHH---hCCEEEEEECCHHHHHHHHccccccc--cC---CcCCCCChHHHHHHHHHHH--
Confidence            1234443 3  333444444443   35689999999999999998764211  00   0000000 01112222223  


Q ss_pred             HHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHH
Q 024067          219 IYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALH  258 (273)
Q Consensus       219 ~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~  258 (273)
                               ..+|.+.. .+.||+++++++++++|.+.|.
T Consensus       140 ---------~~~y~~~a-~~~Id~~~~~e~v~~~i~~~l~  169 (171)
T PRK03731        140 ---------EALYREVA-HHIIDATQPPSQVVSEILSALA  169 (171)
T ss_pred             ---------HHHHHHhC-CEEEcCCCCHHHHHHHHHHHHh
Confidence                     23444322 3788999999999999998875

>PRK00625 shikimate kinase; Provisional

Probab=99.60  E-value=1.9e-14  Score=119.82  Aligned_cols=115  Identities=17%  Similarity=0.164  Sum_probs=72.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhcccCC
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYRG  142 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~-~g~~~~~~~~~~ll~~~l~~~~~~~  142 (273)
                      +.|+|+|+|||||||+++.||+++|+++|++|+++++.....  ....+.+++. .|.....+.....+.. +.     .
T Consensus         1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~--~~~~i~eif~~~Ge~~fr~~E~~~l~~-l~-----~   72 (173)
T PRK00625          1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGA--LYSSPKEIYQAYGEEGFCREEFLALTS-LP-----V   72 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCC--CCCCHHHHHHHHCHHHHHHHHHHHHHH-hc-----c
Confidence            469999999999999999999999999999999998754321  1113444443 2332222223333322 21     1


Q ss_pred             cceEEEeC--CCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCc
Q 024067          143 ESGFILDG--IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA  189 (273)
Q Consensus       143 ~~g~IlDg--~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~  189 (273)
                      ...+|.+|  .+......+.|   ..-..||+|+++.+++.+|+..|..
T Consensus        73 ~~~VIs~GGg~~~~~e~~~~l---~~~~~Vv~L~~~~e~l~~Rl~~R~~  118 (173)
T PRK00625         73 IPSIVALGGGTLMIEPSYAHI---RNRGLLVLLSLPIATIYQRLQKRGL  118 (173)
T ss_pred             CCeEEECCCCccCCHHHHHHH---hcCCEEEEEECCHHHHHHHHhcCCC
Confidence            23344444  22223222333   3346799999999999999998753

>PLN02199 shikimate kinase

Probab=99.60  E-value=6e-14  Score=124.67  Aligned_cols=175  Identities=14%  Similarity=0.122  Sum_probs=106.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhccc
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYY  140 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~-~g~~~~~~~~~~ll~~~l~~~~~  140 (273)
                      ++..|+|+|+|||||||+++.||+.+|+++|++|.++++...     |..+.+++. .|+....+...+.+.+....   
T Consensus       101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~-----G~sI~eIf~~~GE~~FR~~E~e~L~~L~~~---  172 (303)
T PLN02199        101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMN-----GTSVAEIFVHHGENFFRGKETDALKKLSSR---  172 (303)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhc-----CCCHHHHHHHhCHHHHHHHHHHHHHHHHhc---
Confidence            367899999999999999999999999999999999987533     223444453 45444445555555553322   


Q ss_pred             CCcceEEE-eC--CCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHH
Q 024067          141 RGESGFIL-DG--IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKF  217 (273)
Q Consensus       141 ~~~~g~Il-Dg--~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl  217 (273)
                         .++|| .|  .+........|.    -..+|+|+++.+++.+|+.......          .|.-.+++.+.+.+-+
T Consensus       173 ---~~~VIStGGG~V~~~~n~~~L~----~G~vV~Ldas~E~l~~RL~~~~~~~----------RPLL~~~~~d~~~~~~  235 (303)
T PLN02199        173 ---YQVVVSTGGGAVIRPINWKYMH----KGISIWLDVPLEALAHRIAAVGTDS----------RPLLHDESGDAYSVAF  235 (303)
T ss_pred             ---CCEEEECCCcccCCHHHHHHHh----CCeEEEEECCHHHHHHHHhhcCCCC----------CCcCCCCCcchhhhHH
Confidence               23444 33  222333333333    2579999999999999997521110          1211112222222112


Q ss_pred             HHHHHhhHHHHHHHHhcCcEEEE-----------eCCCChhHHHHHHHHHHHhcC
Q 024067          218 RIYAEQGKSLEDYYSKQRKLLNF-----------QVAAAPGETWQGLLSALHLQH  261 (273)
Q Consensus       218 ~~y~~~~~~l~~~y~~~~~~~~i-----------d~~~s~~ev~~~I~~~l~~~~  261 (273)
                      +...+..+....+|++.+..+.+           -.+.+++++..+|...+....
T Consensus       236 ~~L~~L~~~R~plY~~Ad~~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~l  290 (303)
T PLN02199        236 KRLSAIWDERGEAYTNANARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSFL  290 (303)
T ss_pred             HHHHHHHHHHHHHHHhCCEEEecccccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence            22333344556678876544431           124789999999988886543

>PRK13946 shikimate kinase; Provisional

Probab=99.59  E-value=9.2e-14  Score=116.77  Aligned_cols=168  Identities=14%  Similarity=0.122  Sum_probs=100.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~  141 (273)
                      .+..|+|+|+|||||||+++.||+++|++++++|.++.+..  +.+..+.+..   .|.....+....++...+..    
T Consensus         9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~--g~~~~e~~~~---~ge~~~~~~e~~~l~~l~~~----   79 (184)
T PRK13946          9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAA--RMTIAEIFAA---YGEPEFRDLERRVIARLLKG----   79 (184)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHh--CCCHHHHHHH---HCHHHHHHHHHHHHHHHHhc----
Confidence            56689999999999999999999999999999998776543  2222222211   23222223334444443322    


Q ss_pred             CcceEEEeC--CCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHH
Q 024067          142 GESGFILDG--IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRI  219 (273)
Q Consensus       142 ~~~g~IlDg--~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~  219 (273)
                       ...+|..|  .+......+.|.   .-.++|+|++|.+++.+|+..|...+.           ....+..+.+++.++.
T Consensus        80 -~~~Vi~~ggg~~~~~~~r~~l~---~~~~~v~L~a~~e~~~~Rl~~r~~rp~-----------~~~~~~~~~i~~~~~~  144 (184)
T PRK13946         80 -GPLVLATGGGAFMNEETRAAIA---EKGISVWLKADLDVLWERVSRRDTRPL-----------LRTADPKETLARLMEE  144 (184)
T ss_pred             -CCeEEECCCCCcCCHHHHHHHH---cCCEEEEEECCHHHHHHHhcCCCCCCc-----------CCCCChHHHHHHHHHH
Confidence             23344443  233344444443   235789999999999999987753220           0111112233322222


Q ss_pred             HHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcC
Q 024067          220 YAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQH  261 (273)
Q Consensus       220 y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~  261 (273)
                             ...+|.+.+ +.......+++++.+.|.+.+....
T Consensus       145 -------R~~~y~~~d-l~i~~~~~~~~~~~~~i~~~i~~~~  178 (184)
T PRK13946        145 -------RYPVYAEAD-LTVASRDVPKEVMADEVIEALAAYL  178 (184)
T ss_pred             -------HHHHHHhCC-EEEECCCCCHHHHHHHHHHHHHHhh
Confidence                   233566544 3333445799999999999997653

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=99.59  E-value=4.3e-14  Score=119.33  Aligned_cols=168  Identities=15%  Similarity=0.134  Sum_probs=93.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCC--CCHHHHH--------HHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL--VPEDVIF--------ALLS  132 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~--~~~~~~~--------~ll~  132 (273)
                      ++.|+|.|+|||||||+++.|++.++.....+   +....+..+++++.+++++..+..  .......        ..+.
T Consensus         3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v---~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~~~~   79 (195)
T TIGR00041         3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDV---LFTREPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHEHLE   79 (195)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeE---EEEeCCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999985421111   001123356778888887554322  2221111        1111


Q ss_pred             HHHHhcccCCcceEEEeCC----------CCCHH--HHHHHH-hhCC--CceEEEEccCHHHHHHHHhcCCcCCCccccc
Q 024067          133 KRLEEGYYRGESGFILDGI----------PRTRI--QAEILD-QIVD--VDLVINFKSIEDQLVKRNLESEAFSPHKEFL  197 (273)
Q Consensus       133 ~~l~~~~~~~~~g~IlDg~----------P~~~~--qa~~l~-~~~~--~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y  197 (273)
                      ..+... ...+..+|+|.+          +++..  +...+. ....  ||++|+|+++++++++|+..|....      
T Consensus        80 ~~i~~~-l~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~~~~------  152 (195)
T TIGR00041        80 DKIKPA-LAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRGELD------  152 (195)
T ss_pred             HHHHHH-HhCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcCCcc------
Confidence            222211 112345778853          32211  222222 2233  9999999999999999998886310      


Q ss_pred             ccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHH
Q 024067          198 RLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGL  253 (273)
Q Consensus       198 ~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I  253 (273)
                           . ......+.++...+.|       .+.+.+...++.||+++++++|.++|
T Consensus       153 -----~-~~~~~~~~~~~~~~~y-------~~~~~~~~~~~~id~~~~~e~v~~~i  195 (195)
T TIGR00041       153 -----R-EEFEKLDFFEKVRQRY-------LELADKEKSIHVIDATNSVEEVEQDI  195 (195)
T ss_pred             -----h-HHHHHHHHHHHHHHHH-------HHHHcCCCcEEEEeCCCCHHHHHhhC
Confidence                 0 0000011111111222       22233334688999999999998765

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=99.59  E-value=4.1e-14  Score=119.91  Aligned_cols=167  Identities=15%  Similarity=0.138  Sum_probs=108.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCC-----CCHH------------
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL-----VPED------------  125 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~-----~~~~------------  125 (273)
                      +..|.|+|++||||||+++.|++ +|+++|++|.+.++.+.++++.++.+.+.+..+..     +...            
T Consensus         2 ~~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~   80 (194)
T PRK00081          2 MLIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEA   80 (194)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHH
Confidence            45799999999999999999998 99999999999999888888888888777643222     2221            


Q ss_pred             ------HHHHHHHHHHHhcc--cCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCccccc
Q 024067          126 ------VIFALLSKRLEEGY--YRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFL  197 (273)
Q Consensus       126 ------~~~~ll~~~l~~~~--~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y  197 (273)
                            ++...+.+.+...-  .....-+|+|. |.-.+ . .+  ...+|.+|+++||+++..+|+..|...       
T Consensus        81 ~~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~-pll~e-~-~~--~~~~D~vi~V~a~~e~~~~Rl~~R~~~-------  148 (194)
T PRK00081         81 RKKLEAILHPLIREEILEQLQEAESSPYVVLDI-PLLFE-N-GL--EKLVDRVLVVDAPPETQLERLMARDGL-------  148 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccCCEEEEEe-hHhhc-C-Cc--hhhCCeEEEEECCHHHHHHHHHHcCCC-------
Confidence                  12222222222110  11123455553 32211 0 01  124799999999999999999988531       


Q ss_pred             ccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067          198 RLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL  259 (273)
Q Consensus       198 ~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~  259 (273)
                                 +.+.+.+|+....    +..++-...+  +.|+++++++++.+++...+..
T Consensus       149 -----------s~e~~~~ri~~Q~----~~~~~~~~ad--~vI~N~g~~e~l~~qv~~i~~~  193 (194)
T PRK00081        149 -----------SEEEAEAIIASQM----PREEKLARAD--DVIDNNGDLEELRKQVERLLQE  193 (194)
T ss_pred             -----------CHHHHHHHHHHhC----CHHHHHHhCC--EEEECCCCHHHHHHHHHHHHHh
Confidence                       2456677766432    2222222222  6678788999999999988753

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=99.58  E-value=9.1e-14  Score=113.53  Aligned_cols=153  Identities=17%  Similarity=0.218  Sum_probs=98.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~  143 (273)
                      |+|+|+|.||+||||+|++|+ ++|+.+++..+++.+.--     +....+ ..+-..+..+.....+...+.      .
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~~-----~~~~de-~r~s~~vD~d~~~~~le~~~~------~   67 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENGL-----YTEYDE-LRKSVIVDVDKLRKRLEELLR------E   67 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcCC-----eeccCC-ccceEEeeHHHHHHHHHHHhc------c
Confidence            579999999999999999999 999999999988875321     000000 000111233334444444332      3


Q ss_pred             ceEEEeCCCCCHHHHHHHHhhCC-CceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHH-HHHHHHH
Q 024067          144 SGFILDGIPRTRIQAEILDQIVD-VDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWK-EKFRIYA  221 (273)
Q Consensus       144 ~g~IlDg~P~~~~qa~~l~~~~~-~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~-~rl~~y~  221 (273)
                      .+.|+|+.         +.+..+ +|+||.|.|++++|.+|+.+|+..+            .+..   |.+. +.+....
T Consensus        68 ~~~Ivd~H---------~~hl~~~~dlVvVLR~~p~~L~~RLk~RGy~~------------eKI~---ENveAEi~~vi~  123 (180)
T COG1936          68 GSGIVDSH---------LSHLLPDCDLVVVLRADPEVLYERLKGRGYSE------------EKIL---ENVEAEILDVIL  123 (180)
T ss_pred             CCeEeech---------hhhcCCCCCEEEEEcCCHHHHHHHHHHcCCCH------------HHHH---HHHHHHHHHHHH
Confidence            67899875         223334 8999999999999999999998632            0111   1111 2222211


Q ss_pred             HhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHHHHh
Q 024067          222 EQGKSLEDYYSKQRKLLNFQVA-AAPGETWQGLLSALHL  259 (273)
Q Consensus       222 ~~~~~l~~~y~~~~~~~~id~~-~s~~ev~~~I~~~l~~  259 (273)
                            .+-......+++||.+ .+++++.+.|...+..
T Consensus       124 ------~EA~E~~~~v~evdtt~~s~ee~~~~i~~ii~~  156 (180)
T COG1936         124 ------IEAVERFEAVIEVDTTNRSPEEVAEEIIDIIGG  156 (180)
T ss_pred             ------HHHHHhcCceEEEECCCCCHHHHHHHHHHHHcc
Confidence                  1111222468889975 5899999999999984

>PRK00698 tmk thymidylate kinase; Validated

Probab=99.58  E-value=1.9e-13  Score=116.04  Aligned_cols=176  Identities=14%  Similarity=0.169  Sum_probs=102.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHC--CCCCCHHHHHHHH-------H
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE--GKLVPEDVIFALL-------S  132 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~--g~~~~~~~~~~ll-------~  132 (273)
                      +++.|+|.|++||||||+++.|++.++.....+  .+..+ +.++..++.+++.+..  ....+.......+       .
T Consensus         2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~--~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~   78 (205)
T PRK00698          2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRDV--VFTRE-PGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQHLE   78 (205)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCce--eEeeC-CCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999999884321110  11112 2346688888888763  2222222211111       1


Q ss_pred             HHHHhcccCCcceEEEeCCCCCH------------HHHHHHHhh----CCCceEEEEccCHHHHHHHHhcCCcCCCcccc
Q 024067          133 KRLEEGYYRGESGFILDGIPRTR------------IQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEF  196 (273)
Q Consensus       133 ~~l~~~~~~~~~g~IlDg~P~~~------------~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~  196 (273)
                      ..+... ...+..+|+|.++-+.            .....+...    ..||++|+|++|++++.+|+..|....     
T Consensus        79 ~~i~~~-l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~~~~-----  152 (205)
T PRK00698         79 EVIKPA-LARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARGELD-----  152 (205)
T ss_pred             HHHHHH-HHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcc-----
Confidence            111111 0124678898554331            112222221    469999999999999999999886311     


Q ss_pred             cccCCCCCCCCCcHHHHHHHHH-HHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067          197 LRLGGARFSAADAASAWKEKFR-IYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ  260 (273)
Q Consensus       197 y~~~~~~~~~~d~~e~~~~rl~-~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~  260 (273)
                              ..+.....+.+++. .|..    +.+.+  ...++.||+++++++++++|.+.+...
T Consensus       153 --------~~~~~~~~~~~~~~~~y~~----~~~~~--~~~~~~Id~~~~~e~v~~~i~~~i~~~  203 (205)
T PRK00698        153 --------RIEQEGLDFFERVREGYLE----LAEKE--PERIVVIDASQSLEEVHEDILAVIKAW  203 (205)
T ss_pred             --------hhhhhhHHHHHHHHHHHHH----HHHhC--CCeEEEEeCCCCHHHHHHHHHHHHHHH
Confidence                    00111112333333 2322    22211  235788999999999999999988653

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=99.57  E-value=1.6e-13  Score=116.37  Aligned_cols=166  Identities=14%  Similarity=0.151  Sum_probs=107.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCC------CCH-------------
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL------VPE-------------  124 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~------~~~-------------  124 (273)
                      ++|.|+|++||||||+++.|++.+|+++||+|++.++.+.++++.++.+.+.+..+..      +..             
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~   81 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE   81 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence            4789999999999999999999999999999999999888888888888877743221      221             


Q ss_pred             -----HHHHHHHHHHHHhc--ccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCccccc
Q 024067          125 -----DVIFALLSKRLEEG--YYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFL  197 (273)
Q Consensus       125 -----~~~~~ll~~~l~~~--~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y  197 (273)
                           +++..++...+...  ......-+|+|. |.-.+.  .+.  ..+|.+|+++||.++..+|+..|..        
T Consensus        82 ~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e~-pll~E~--~~~--~~~D~ii~V~a~~e~r~~Rl~~R~g--------  148 (195)
T PRK14730         82 RRWLENLIHPYVRERFEEELAQLKSNPIVVLVI-PLLFEA--KLT--DLCSEIWVVDCSPEQQLQRLIKRDG--------  148 (195)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEe-HHhcCc--chH--hCCCEEEEEECCHHHHHHHHHHcCC--------
Confidence                 11122222222211  011123445542 322110  011  2579999999999999999998852        


Q ss_pred             ccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHH
Q 024067          198 RLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALH  258 (273)
Q Consensus       198 ~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~  258 (273)
                                -+.+.+.+|+...   . +....-...+  +.|+++++.+++.+++...+.
T Consensus       149 ----------~s~e~~~~ri~~Q---~-~~~~k~~~aD--~vI~N~g~~e~l~~qv~~~l~  193 (195)
T PRK14730        149 ----------LTEEEAEARINAQ---W-PLEEKVKLAD--VVLDNSGDLEKLYQQVDQLLK  193 (195)
T ss_pred             ----------CCHHHHHHHHHhC---C-CHHHHHhhCC--EEEECCCCHHHHHHHHHHHHh
Confidence                      1244566666531   1 2222112223  466878999999999988764

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.56  E-value=7e-13  Score=107.09  Aligned_cols=169  Identities=19%  Similarity=0.194  Sum_probs=100.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccC-CChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCC
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSP-RSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG  142 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~-~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~  142 (273)
                      ++|.|.|+|||||||+|+.||+++|++++|.|.+.|+-... +-++ .++..+-++.-.+ |..+-+...+...      
T Consensus         1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl-~ef~~~AE~~p~i-D~~iD~rq~e~a~------   72 (179)
T COG1102           1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSL-EEFSRYAEEDPEI-DKEIDRRQKELAK------   72 (179)
T ss_pred             CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCH-HHHHHHHhcCchh-hHHHHHHHHHHHH------
Confidence            57899999999999999999999999999999999965432 1121 2222333322111 2222222222222      


Q ss_pred             cceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHHH
Q 024067          143 ESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAE  222 (273)
Q Consensus       143 ~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~  222 (273)
                      ..++||+|-      ...|-....+|+.|+|.+|.++..+|+..|..-.                 -.+.+.+-...=..
T Consensus        73 ~~nvVlegr------LA~Wi~k~~adlkI~L~Apl~vRa~Ria~REgi~-----------------~~~a~~~~~~RE~s  129 (179)
T COG1102          73 EGNVVLEGR------LAGWIVREYADLKIWLKAPLEVRAERIAKREGID-----------------VDEALAETVEREES  129 (179)
T ss_pred             cCCeEEhhh------hHHHHhccccceEEEEeCcHHHHHHHHHHhcCCC-----------------HHHHHHHHHHHHHH
Confidence            477899873      1111111468999999999999999999986311                 11121111111011


Q ss_pred             hhHHHHHHHHhc--C---cEEEEeCCC-ChhHHHHHHHHHHHhcCCC
Q 024067          223 QGKSLEDYYSKQ--R---KLLNFQVAA-APGETWQGLLSALHLQHMN  263 (273)
Q Consensus       223 ~~~~l~~~y~~~--~---~~~~id~~~-s~~ev~~~I~~~l~~~~~~  263 (273)
                      +.+--.++|.-.  +   .=++||++. ++++|+.-|...+...+.+
T Consensus       130 e~kRY~~~YgIDidDlSiyDLVinTs~~~~~~v~~il~~aid~~~~~  176 (179)
T COG1102         130 EKKRYKKIYGIDIDDLSIYDLVINTSKWDPEEVFLILLDAIDALSIK  176 (179)
T ss_pred             HHHHHHHHhCCCCccceeeEEEEecccCCHHHHHHHHHHHHHhhccc
Confidence            111122344211  1   124567764 8999999999999877653

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=99.54  E-value=1.6e-12  Score=109.22  Aligned_cols=169  Identities=13%  Similarity=0.127  Sum_probs=98.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh---CCCeechhHHHHHHccCCChHHHHHHHHHHCCC---CCCHHHHH-------HH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEGK---LVPEDVIF-------AL  130 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~---g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~---~~~~~~~~-------~l  130 (273)
                      +.|+|.|++||||||+++.|++.+   |..++.+..      +..+..++.+++++..+.   ..+.....       ..
T Consensus         1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~   74 (200)
T cd01672           1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTRE------PGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQH   74 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC------CCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHH
Confidence            478999999999999999999998   555543321      223456677777766542   11111111       11


Q ss_pred             HHHHHHhcccCCcceEEEeCCCCC------------HHHHHHHHh----hCCCceEEEEccCHHHHHHHHhcCCcCCCcc
Q 024067          131 LSKRLEEGYYRGESGFILDGIPRT------------RIQAEILDQ----IVDVDLVINFKSIEDQLVKRNLESEAFSPHK  194 (273)
Q Consensus       131 l~~~l~~~~~~~~~g~IlDg~P~~------------~~qa~~l~~----~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~  194 (273)
                      +.+.+... ...+..+|+|.++.+            ..+...+..    ...|+++|+|+++++++.+|+..|....   
T Consensus        75 ~~~~~~~~-~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~---  150 (200)
T cd01672          75 VEEVIKPA-LARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDD---  150 (200)
T ss_pred             HHHHHHHH-HhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcc---
Confidence            11112211 123567888865532            112222221    1368999999999999999999886421   


Q ss_pred             cccccCCCCCCCCCcHHHHHHHHH-HHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHH
Q 024067          195 EFLRLGGARFSAADAASAWKEKFR-IYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALH  258 (273)
Q Consensus       195 ~~y~~~~~~~~~~d~~e~~~~rl~-~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~  258 (273)
                                ...+....+.+++. .|.    .+...+  ...++.||++.+++++.++|...|.
T Consensus       151 ----------~~~~~~~~~~~~~~~~y~----~~~~~~--~~~~~~id~~~~~e~i~~~i~~~i~  199 (200)
T cd01672         151 ----------RDEQEGLEFHERVREGYL----ELAAQE--PERIIVIDASQPLEEVLAEILKAIL  199 (200)
T ss_pred             ----------hhhhhhHHHHHHHHHHHH----HHHHhC--CCeEEEEeCCCCHHHHHHHHHHHHh
Confidence                      00011122223322 222    121111  1358899999999999999998875

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.54  E-value=1.6e-13  Score=133.05  Aligned_cols=170  Identities=17%  Similarity=0.220  Sum_probs=110.5

Q ss_pred             CCCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHh
Q 024067           59 PPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAV-NEGKLVPEDVIFALLSKRLEE  137 (273)
Q Consensus        59 ~~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l-~~g~~~~~~~~~~ll~~~l~~  137 (273)
                      .|.|..+|+|+|+|||||||+++.||+++|+++||+|+++.+.      .|+.|.+++ ..|+....+...+.+.+.+..
T Consensus         2 ~~~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~------~g~si~eif~~~Ge~~FR~~E~~~l~~~~~~   75 (542)
T PRK14021          2 KPTRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIERE------IGMSIPSYFEEYGEPAFREVEADVVADMLED   75 (542)
T ss_pred             CCCCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHH------HCcCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4678899999999999999999999999999999999998864      355677766 456656666666666654432


Q ss_pred             cccCCcceEEE-eC--CCCCHHHHHHHHhh-CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHH
Q 024067          138 GYYRGESGFIL-DG--IPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAW  213 (273)
Q Consensus       138 ~~~~~~~g~Il-Dg--~P~~~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~  213 (273)
                            .+.|| .|  .+........|..+ ..-..+|||+++.+++.+|+..+...|            .-..+..+.+
T Consensus        76 ------~~~VIs~GGG~v~~~~n~~~L~~~~~~~g~vv~L~~~~~~l~~Rl~~~~~RP------------ll~~~~~~~~  137 (542)
T PRK14021         76 ------FDGIFSLGGGAPMTPSTQHALASYIAHGGRVVYLDADPKEAMERANRGGGRP------------MLNGDANKRW  137 (542)
T ss_pred             ------CCeEEECCCchhCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHhCCCCCC------------CCCCCcHHHH
Confidence                  23344 32  34444444444322 223479999999999999996543211            1111112222


Q ss_pred             HHHHHHHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHHHHhc
Q 024067          214 KEKFRIYAEQGKSLEDYYSKQRKLLNFQVA-AAPGETWQGLLSALHLQ  260 (273)
Q Consensus       214 ~~rl~~y~~~~~~l~~~y~~~~~~~~id~~-~s~~ev~~~I~~~l~~~  260 (273)
                      +    .   .......+|++... +.||++ .+++++.++|.+.+...
T Consensus       138 ~----~---l~~~R~~~Y~~~Ad-~~i~~~~~~~~~~~~~i~~~~~~~  177 (542)
T PRK14021        138 K----K---LFKQRDPVFRQVAN-VHVHTRGLTPQAAAKKLIDMVAER  177 (542)
T ss_pred             H----H---HHHHHHHHHHhhCC-EEEECCCCCHHHHHHHHHHHHHhc
Confidence            2    2   12223446665222 445544 58999999999988754

>PRK00131 aroK shikimate kinase; Reviewed

Probab=99.53  E-value=2.4e-13  Score=112.10  Aligned_cols=166  Identities=17%  Similarity=0.224  Sum_probs=94.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~  141 (273)
                      .++.|+|+|+|||||||+|+.||+.+|+++++.|+++++....  +....+.   ..|.....+....++...+..    
T Consensus         3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g~--~~~~~~~---~~g~~~~~~~~~~~~~~l~~~----   73 (175)
T PRK00131          3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAGK--SIPEIFE---EEGEAAFRELEEEVLAELLAR----   73 (175)
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCC--CHHHHHH---HHCHHHHHHHHHHHHHHHHhc----
Confidence            4678999999999999999999999999999999888754321  2221111   122211122233333333321    


Q ss_pred             CcceEEEeCC--CCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHH
Q 024067          142 GESGFILDGI--PRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRI  219 (273)
Q Consensus       142 ~~~g~IlDg~--P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~  219 (273)
                       ...+|..|.  .........|.   ....+|+|++|.+.+.+|+..+...+           ....++..+.+++.+..
T Consensus        74 -~~~vi~~g~~~~~~~~~r~~l~---~~~~~v~l~~~~~~~~~R~~~~~~r~-----------~~~~~~~~~~~~~~~~~  138 (175)
T PRK00131         74 -HNLVISTGGGAVLREENRALLR---ERGTVVYLDASFEELLRRLRRDRNRP-----------LLQTNDPKEKLRDLYEE  138 (175)
T ss_pred             -CCCEEEeCCCEeecHHHHHHHH---hCCEEEEEECCHHHHHHHhcCCCCCC-----------cCCCCChHHHHHHHHHH
Confidence             123333331  11222223332   34589999999999999998765311           00112222233322222


Q ss_pred             HHHhhHHHHHHHHhcCcEEEEeC-CCChhHHHHHHHHHHHh
Q 024067          220 YAEQGKSLEDYYSKQRKLLNFQV-AAAPGETWQGLLSALHL  259 (273)
Q Consensus       220 y~~~~~~l~~~y~~~~~~~~id~-~~s~~ev~~~I~~~l~~  259 (273)
                      .    .   ..|..... +.||+ +.+++++.+.|.+.+..
T Consensus       139 ~----~---~~~~~~~d-l~idt~~~~~~e~~~~I~~~v~~  171 (175)
T PRK00131        139 R----D---PLYEEVAD-ITVETDGRSPEEVVNEILEKLEA  171 (175)
T ss_pred             H----H---HHHHhhcC-eEEeCCCCCHHHHHHHHHHHHHh
Confidence            1    1   22333112 44664 56899999999999864

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=99.53  E-value=1e-12  Score=108.28  Aligned_cols=162  Identities=21%  Similarity=0.202  Sum_probs=93.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCC-ChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCC
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPR-SALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG  142 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~-~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~  142 (273)
                      ++|+|.|++||||||+|+.|++++|+++++.++++++..... .+. ..+.......   +  .+...+...+... +..
T Consensus         1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~---~--~~~~~~~~~i~~~-~~~   73 (171)
T TIGR02173         1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDL-IEFLNYAEEN---P--EIDKKIDRRIHEI-ALK   73 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCH-HHHHHHHhcC---c--HHHHHHHHHHHHH-Hhc
Confidence            478999999999999999999999999999999887643211 111 1111111111   1  1122222222221 112


Q ss_pred             cceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHHH
Q 024067          143 ESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAE  222 (273)
Q Consensus       143 ~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~  222 (273)
                      ..++|+||.-....    +  ...+|++|+|++|.+++.+|+..|...+                  .+...+++..-..
T Consensus        74 ~~~~Vi~g~~~~~~----~--~~~~d~~v~v~a~~~~r~~R~~~R~~~s------------------~~~a~~~~~~~d~  129 (171)
T TIGR02173        74 EKNVVLESRLAGWI----V--REYADVKIWLKAPLEVRARRIAKREGKS------------------LTVARSETIEREE  129 (171)
T ss_pred             CCCEEEEeccccee----e--cCCcCEEEEEECCHHHHHHHHHHccCCC------------------HHHHHHHHHHHHH
Confidence            46789998533211    1  1247799999999999999999886311                  2222332221111


Q ss_pred             hh-HHHHHHHHh-----cCcEEEEeCCC-ChhHHHHHHHHHH
Q 024067          223 QG-KSLEDYYSK-----QRKLLNFQVAA-APGETWQGLLSAL  257 (273)
Q Consensus       223 ~~-~~l~~~y~~-----~~~~~~id~~~-s~~ev~~~I~~~l  257 (273)
                      .. +-...||..     ...=+.||++. ++++ .+.|.+++
T Consensus       130 ~~~~~~~~~~~~~~~~~~~ydl~i~t~~~~~~~-~~~i~~~~  170 (171)
T TIGR02173       130 SEKRRYLKFYGIDIDDLSIYDLVINTSNWDPNN-VDIILDAL  170 (171)
T ss_pred             HHHHHHHHHhCCCccccccccEEEECCCCCHHH-HHHHHHHh
Confidence            11 111233422     11226778764 8999 99888765

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=99.53  E-value=4e-13  Score=114.44  Aligned_cols=167  Identities=13%  Similarity=0.120  Sum_probs=107.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCH-----H-------------
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPE-----D-------------  125 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~-----~-------------  125 (273)
                      +.|.|+|++||||||+++.|++ +|+++|+.|++.++.+.++++..+.+.+.+..+...++     .             
T Consensus         2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~   80 (200)
T PRK14734          2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT   80 (200)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence            5789999999999999999997 89999999999999888888888888888766544332     0             


Q ss_pred             -----HHHHHHHHHHHhc---ccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCccccc
Q 024067          126 -----VIFALLSKRLEEG---YYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFL  197 (273)
Q Consensus       126 -----~~~~ll~~~l~~~---~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y  197 (273)
                           ++...+...+...   ....+..+++-..|.-.+.    .....+|.+|+++||.++.++|+..|+.-       
T Consensus        81 ~~le~i~hP~v~~~~~~~~~~~~~~~~~~vv~e~plL~e~----g~~~~~D~vi~V~a~~e~ri~Rl~~R~g~-------  149 (200)
T PRK14734         81 ALLNAITHPRIAEETARRFNEARAQGAKVAVYDMPLLVEK----GLDRKMDLVVVVDVDVEERVRRLVEKRGL-------  149 (200)
T ss_pred             HHHHHhhCHHHHHHHHHHHHHHHhcCCCEEEEEeeceeEc----CccccCCeEEEEECCHHHHHHHHHHcCCC-------
Confidence                 1111111111110   0001122333323321110    00125799999999999999999988521       


Q ss_pred             ccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067          198 RLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL  259 (273)
Q Consensus       198 ~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~  259 (273)
                                 +.+.+.+|+..+...    ..+....  .+.|+++++++++.+++..++..
T Consensus       150 -----------s~e~~~~ri~~Q~~~----~~k~~~a--d~vI~N~g~~e~l~~~v~~~~~~  194 (200)
T PRK14734        150 -----------DEDDARRRIAAQIPD----DVRLKAA--DIVVDNNGTREQLLAQVDGLIAE  194 (200)
T ss_pred             -----------CHHHHHHHHHhcCCH----HHHHHhC--CEEEECcCCHHHHHHHHHHHHHH
Confidence                       245667776654322    1112222  35688899999999999988754

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=99.53  E-value=7.1e-13  Score=110.27  Aligned_cols=162  Identities=14%  Similarity=0.214  Sum_probs=96.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhcccC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYR  141 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~-~g~~~~~~~~~~ll~~~l~~~~~~  141 (273)
                      ...|+|+|++||||||+++.|++.++++++++|..+.+...  ..    +..++. .|.....+...+++.. +..    
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g--~~----i~~~~~~~g~~~fr~~e~~~l~~-l~~----   72 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG--AD----IGWVFDVEGEEGFRDREEKVINE-LTE----   72 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhC--cC----HhHHHHHhCHHHHHHHHHHHHHH-HHh----
Confidence            45799999999999999999999999999999987765431  11    222222 2322222223334433 221    


Q ss_pred             CcceEEEeC---CCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHH
Q 024067          142 GESGFILDG---IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFR  218 (273)
Q Consensus       142 ~~~g~IlDg---~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~  218 (273)
                       ..++|+..   .+.+......|.   ..+.+|+|++|.+++.+|+..+...|            ...+...   .+.+.
T Consensus        73 -~~~~vi~~ggg~v~~~~~~~~l~---~~~~vv~L~~~~e~~~~Ri~~~~~rP------------~~~~~~~---~~~~~  133 (172)
T PRK05057         73 -KQGIVLATGGGSVKSRETRNRLS---ARGVVVYLETTIEKQLARTQRDKKRP------------LLQVDDP---REVLE  133 (172)
T ss_pred             -CCCEEEEcCCchhCCHHHHHHHH---hCCEEEEEeCCHHHHHHHHhCCCCCC------------CCCCCCH---HHHHH
Confidence             23455542   222323334443   34689999999999999997554322            1112211   11222


Q ss_pred             HHHHhhHHHHHHHHh-cCcEEEEeCC-CChhHHHHHHHHHHHh
Q 024067          219 IYAEQGKSLEDYYSK-QRKLLNFQVA-AAPGETWQGLLSALHL  259 (273)
Q Consensus       219 ~y~~~~~~l~~~y~~-~~~~~~id~~-~s~~ev~~~I~~~l~~  259 (273)
                      .+.+.   ...+|++ .+  +.||++ .+++++.+.|.+.+..
T Consensus       134 ~l~~~---R~~~Y~~~Ad--~~idt~~~s~~ei~~~i~~~l~~  171 (172)
T PRK05057        134 ALANE---RNPLYEEIAD--VTIRTDDQSAKVVANQIIHMLES  171 (172)
T ss_pred             HHHHH---HHHHHHhhCC--EEEECCCCCHHHHHHHHHHHHhh
Confidence            22222   2445666 34  456655 5899999999988854

>PRK04182 cytidylate kinase; Provisional

Probab=99.53  E-value=4.6e-13  Score=111.14  Aligned_cols=168  Identities=22%  Similarity=0.231  Sum_probs=94.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccC-CChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCC
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSP-RSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG  142 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~-~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~  142 (273)
                      ++|+|+|+|||||||+|+.|++++|+++++++++++..... +... ..+   ...+...+.  +...+...+... ...
T Consensus         1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~-~~~---~~~~~~~~~--~~~~~~~~~~~~-~~~   73 (180)
T PRK04182          1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSL-EEF---NKYAEEDPE--IDKEIDRRQLEI-AEK   73 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCH-HHH---HHHhhcCch--HHHHHHHHHHHH-Hhc
Confidence            47899999999999999999999999999999988864421 1111 112   222222221  111121212111 012


Q ss_pred             cceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHHH
Q 024067          143 ESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAE  222 (273)
Q Consensus       143 ~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~  222 (273)
                      ..++|+||.-...    .+.  ..++++|+|++|.+++.+|+..|...+              ..+....++++-..   
T Consensus        74 ~~~~Vi~g~~~~~----~~~--~~~~~~V~l~a~~e~~~~Rl~~r~~~~--------------~~~a~~~~~~~d~~---  130 (180)
T PRK04182         74 EDNVVLEGRLAGW----MAK--DYADLKIWLKAPLEVRAERIAEREGIS--------------VEEALEETIEREES---  130 (180)
T ss_pred             CCCEEEEEeecce----Eec--CCCCEEEEEECCHHHHHHHHHhccCCC--------------HHHHHHHHHHHHHH---
Confidence            4678998742111    111  127899999999999999998875211              01111111111111   


Q ss_pred             hhHHHHHHHHh-----cCcEEEEeCC-CChhHHHHHHHHHHHhcC
Q 024067          223 QGKSLEDYYSK-----QRKLLNFQVA-AAPGETWQGLLSALHLQH  261 (273)
Q Consensus       223 ~~~~l~~~y~~-----~~~~~~id~~-~s~~ev~~~I~~~l~~~~  261 (273)
                      ...-...+|..     ...-+.||++ .+++++.+.|...+....
T Consensus       131 ~~~~~~~~~~~~~~~~~~~d~~idt~~~~~~~~~~~I~~~~~~~~  175 (180)
T PRK04182        131 EAKRYKEYYGIDIDDLSIYDLVINTSRWDPEGVFDIILTAIDKLL  175 (180)
T ss_pred             HHHHHHHHhCCCccccccccEEEECCCCCHHHHHHHHHHHHHHHh
Confidence            00111223310     1112567765 489999999999987653

>PRK06762 hypothetical protein; Provisional

Probab=99.51  E-value=9.8e-13  Score=108.31  Aligned_cols=158  Identities=16%  Similarity=0.160  Sum_probs=96.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh--CCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccc
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLL--EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY  140 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~--g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~  140 (273)
                      ++.|+|+|+|||||||+|+.|++.+  ++.+++.|. +++.+.....         ..+ ....+.+..++...+..   
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~-~r~~l~~~~~---------~~~-~~~~~~~~~~~~~~~~~---   67 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDV-VRRDMLRVKD---------GPG-NLSIDLIEQLVRYGLGH---   67 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHH-HHHHhccccC---------CCC-CcCHHHHHHHHHHHHhC---
Confidence            5789999999999999999999999  567788655 4433321100         001 11122333333333332   


Q ss_pred             CCcceEEEeCCCCCHHHHHHHHh----hCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHH
Q 024067          141 RGESGFILDGIPRTRIQAEILDQ----IVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEK  216 (273)
Q Consensus       141 ~~~~g~IlDg~P~~~~qa~~l~~----~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~r  216 (273)
                        +..+|+|+..........+..    ...+..+|+|++|.+++++|...|....               .-.++.++.+
T Consensus        68 --g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~~---------------~~~~~~l~~~  130 (166)
T PRK06762         68 --CEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKSH---------------EFGEDDMRRW  130 (166)
T ss_pred             --CCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccccc---------------cCCHHHHHHH
Confidence              467899987544433333332    2346789999999999999999886311               0123445544


Q ss_pred             HHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067          217 FRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ  260 (273)
Q Consensus       217 l~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~  260 (273)
                      +....    ++   +. .+ .+.++.+.++++|.++|...+..+
T Consensus       131 ~~~~~----~~---~~-~~-~~~~~~~~~~~~v~~~i~~~~~~~  165 (166)
T PRK06762        131 WNPHD----TL---GV-IG-ETIFTDNLSLKDIFDAILTDIGLR  165 (166)
T ss_pred             HhhcC----Cc---CC-CC-eEEecCCCCHHHHHHHHHHHhccC
Confidence            43321    11   10 12 344566679999999999987653

>PRK04040 adenylate kinase; Provisional

Probab=99.51  E-value=1.5e-12  Score=109.80  Aligned_cols=171  Identities=14%  Similarity=0.186  Sum_probs=100.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh--CCCeechhHHHHHHccCCC--hHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLL--EVPHISMGSLVRQELSPRS--ALYKQIANAVNEGKLVPEDVIFALLSKRLEEG  138 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~--g~~~is~~dllr~~~~~~~--~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~  138 (273)
                      ++.|+|+|+|||||||+++.|++++  ++.+++.++++++......  .....++..    .......+..+..+.+...
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~l----~~~~~~~~~~~a~~~i~~~   77 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRKL----PPEEQKELQREAAERIAEM   77 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhhC----ChhhhHHHHHHHHHHHHHh
Confidence            5789999999999999999999999  8999999999876543221  111222211    0111112223334444332


Q ss_pred             ccCCcceEEEeCCCCCH--------HHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcH
Q 024067          139 YYRGESGFILDGIPRTR--------IQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAA  210 (273)
Q Consensus       139 ~~~~~~g~IlDg~P~~~--------~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~  210 (273)
                        .....+|+||.....        .....+.. ..||.+|+|.++++++++|........             +..+++
T Consensus        78 --~~~~~~~~~~h~~i~~~~g~~~~~~~~~~~~-l~pd~ii~l~a~p~~i~~Rrl~d~~R~-------------R~~es~  141 (188)
T PRK04040         78 --AGEGPVIVDTHATIKTPAGYLPGLPEWVLEE-LNPDVIVLIEADPDEILMRRLRDETRR-------------RDVETE  141 (188)
T ss_pred             --hcCCCEEEeeeeeeccCCCCcCCCCHHHHhh-cCCCEEEEEeCCHHHHHHHHhcccccC-------------CCCCCH
Confidence              223558999843211        12222322 489999999999999988887531000             123445


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHh-cC--cEEEEeCCCChhHHHHHHHHHH
Q 024067          211 SAWKEKFRIYAEQGKSLEDYYSK-QR--KLLNFQVAAAPGETWQGLLSAL  257 (273)
Q Consensus       211 e~~~~rl~~y~~~~~~l~~~y~~-~~--~~~~id~~~s~~ev~~~I~~~l  257 (273)
                      +.++.++..-+...    .+|.. .+  .++.+|-++-+++.+++|...|
T Consensus       142 e~I~~~~~~a~~~a----~~~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii  187 (188)
T PRK04040        142 EDIEEHQEMNRAAA----MAYAVLTGATVKIVENREGLLEEAAEEIVEVL  187 (188)
T ss_pred             HHHHHHHHHHHHHH----HHHHHhcCCeEEEEECCCCCHHHHHHHHHHHh
Confidence            66666665443321    22322 12  2344444444999999998876

>PLN02422 dephospho-CoA kinase

Probab=99.51  E-value=9.2e-13  Score=114.23  Aligned_cols=167  Identities=15%  Similarity=0.132  Sum_probs=105.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCC-----CCH--------------
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL-----VPE--------------  124 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~-----~~~--------------  124 (273)
                      +.|.|+|++||||||+++.|+ ++|+++||+|++.++.+.++++....+.+.+.....     +..              
T Consensus         2 ~~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~   80 (232)
T PLN02422          2 RVVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKR   80 (232)
T ss_pred             eEEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence            468999999999999999999 689999999999999988887777777766532221     221              


Q ss_pred             ----HHHHHHHHHHHH----hcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccc
Q 024067          125 ----DVIFALLSKRLE----EGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEF  196 (273)
Q Consensus       125 ----~~~~~ll~~~l~----~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~  196 (273)
                          +++...+...+.    .....+..-+|+| .|.-.+ . .+  ...+|.+|+++||.++..+|+..|+..      
T Consensus        81 ~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~e-ipLL~E-~-~~--~~~~D~vI~V~a~~e~ri~RL~~R~g~------  149 (232)
T PLN02422         81 QLLNRLLAPYISSGIFWEILKLWLKGCKVIVLD-IPLLFE-T-KM--DKWTKPVVVVWVDPETQLERLMARDGL------  149 (232)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEE-ehhhhh-c-ch--hhhCCEEEEEECCHHHHHHHHHHcCCC------
Confidence                112222222221    1101112334554 332221 0 01  125799999999999999999998631      


Q ss_pred             cccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067          197 LRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ  260 (273)
Q Consensus       197 y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~  260 (273)
                                  +.+.+.+|+..-.    +..+.-...+  +.|+++++.+++.+++...+...
T Consensus       150 ------------s~eea~~Ri~~Q~----~~eek~~~AD--~VI~N~gs~e~L~~qv~~ll~~l  195 (232)
T PLN02422        150 ------------SEEQARNRINAQM----PLDWKRSKAD--IVIDNSGSLEDLKQQFQKVLEKI  195 (232)
T ss_pred             ------------CHHHHHHHHHHcC----ChhHHHhhCC--EEEECCCCHHHHHHHHHHHHHHH
Confidence                        2356666663221    1212112222  56777899999999999887654

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=99.50  E-value=1.3e-12  Score=118.37  Aligned_cols=174  Identities=14%  Similarity=0.154  Sum_probs=102.4

Q ss_pred             CCCCCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q 024067           57 GSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRL  135 (273)
Q Consensus        57 ~~~~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~-~g~~~~~~~~~~ll~~~l  135 (273)
                      ...+.++..|+|+|+|||||||+++.|++++|++++++|..+.+..      |..+.+++. .|.....+...+.+...+
T Consensus       127 ~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~------G~~i~ei~~~~G~~~fr~~e~~~l~~ll  200 (309)
T PRK08154        127 GRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREA------GLSVSEIFALYGQEGYRRLERRALERLI  200 (309)
T ss_pred             hhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHh------CCCHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence            3445567899999999999999999999999999999988776542      112233322 232222233344444433


Q ss_pred             HhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCC-CCCCcHHHHH
Q 024067          136 EEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF-SAADAASAWK  214 (273)
Q Consensus       136 ~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~-~~~d~~e~~~  214 (273)
                      ..     ...+||............+.......++|+|+++.+++.+|+..|....           |. ..++..+.++
T Consensus       201 ~~-----~~~~VI~~Ggg~v~~~~~~~~l~~~~~~V~L~a~~e~~~~Rl~~r~~~r-----------p~~~~~~~~e~i~  264 (309)
T PRK08154        201 AE-----HEEMVLATGGGIVSEPATFDLLLSHCYTVWLKASPEEHMARVRAQGDLR-----------PMADNREAMEDLR  264 (309)
T ss_pred             hh-----CCCEEEECCCchhCCHHHHHHHHhCCEEEEEECCHHHHHHHHhcCCCCC-----------CCCCCCChHHHHH
Confidence            32     1224443211111111112222234579999999999999998875321           10 1122233444


Q ss_pred             HHHHHHHHhhHHHHHHHHhcCcEEEEeCCC-ChhHHHHHHHHHHHhcC
Q 024067          215 EKFRIYAEQGKSLEDYYSKQRKLLNFQVAA-APGETWQGLLSALHLQH  261 (273)
Q Consensus       215 ~rl~~y~~~~~~l~~~y~~~~~~~~id~~~-s~~ev~~~I~~~l~~~~  261 (273)
                      +.+.       ....+|+..+  +.||+++ +++++.+.|...+....
T Consensus       265 ~~~~-------~R~~~y~~ad--~~I~t~~~s~ee~~~~I~~~l~~~~  303 (309)
T PRK08154        265 RILA-------SREPLYARAD--AVVDTSGLTVAQSLARLRELVRPAL  303 (309)
T ss_pred             HHHH-------HHHHHHHhCC--EEEECCCCCHHHHHHHHHHHHHHHh
Confidence            3322       2234565433  4567665 89999999999986554

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=99.48  E-value=9.4e-13  Score=108.12  Aligned_cols=154  Identities=15%  Similarity=0.132  Sum_probs=91.1

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCH----HHH---HHHHHHHHHhc
Q 024067           66 WVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPE----DVI---FALLSKRLEEG  138 (273)
Q Consensus        66 Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~----~~~---~~ll~~~l~~~  138 (273)
                      |+|+|+|||||||+++.|++.++..+++.|++......         .. ...|....+    ...   ...+...+.. 
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~---------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-   69 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANI---------EK-MSAGIPLNDDDRWPWLQNLNDASTAAAAK-   69 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHH---------HH-HHcCCCCChhhHHHHHHHHHHHHHHHHhc-
Confidence            57899999999999999999999999999887432100         00 001111111    111   1222222222 


Q ss_pred             ccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHH
Q 024067          139 YYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFR  218 (273)
Q Consensus       139 ~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~  218 (273)
                          +...|+|...........+......-.+|+|+++.+++.+|+..|..+.                ...+.+..++.
T Consensus        70 ----~~~~Vi~~t~~~~~~r~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~----------------~~~~~i~~~~~  129 (163)
T TIGR01313        70 ----NKVGIITCSALKRHYRDILREAEPNLHFIYLSGDKDVILERMKARKGHF----------------MKADMLESQFA  129 (163)
T ss_pred             ----CCCEEEEecccHHHHHHHHHhcCCCEEEEEEeCCHHHHHHHHHhccCCC----------------CCHHHHHHHHH
Confidence                2233665443334444444433333357999999999999999886321                01234555444


Q ss_pred             HHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHH
Q 024067          219 IYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL  257 (273)
Q Consensus       219 ~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l  257 (273)
                      .+..   |.   +.+ ..++.||++++++++.++|...|
T Consensus       130 ~~~~---~~---~~e-~~~~~id~~~~~~~~~~~~~~~~  161 (163)
T TIGR01313       130 ALEE---PL---ADE-TDVLRVDIDQPLEGVEEDCIAVV  161 (163)
T ss_pred             HhCC---CC---CCC-CceEEEECCCCHHHHHHHHHHHH
Confidence            3321   10   111 24789999999999999998876

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=99.48  E-value=8.2e-13  Score=105.23  Aligned_cols=158  Identities=19%  Similarity=0.229  Sum_probs=101.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~  141 (273)
                      ..+.|+|+|-||+||||+|++||+.+|++||.+++++++...     .....+-. +--.+.++-+...|...+..    
T Consensus         6 ~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l-----~~gyDE~y-~c~i~DEdkv~D~Le~~m~~----   75 (176)
T KOG3347|consen    6 ERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNL-----YEGYDEEY-KCHILDEDKVLDELEPLMIE----   75 (176)
T ss_pred             cCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcc-----hhcccccc-cCccccHHHHHHHHHHHHhc----
Confidence            457899999999999999999999999999999999986432     11100000 01134566777777777764    


Q ss_pred             CcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHH--HH
Q 024067          142 GESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKF--RI  219 (273)
Q Consensus       142 ~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl--~~  219 (273)
                        .|.|+|-.....---      -.+|+||.|.||.++|.+||..|..+.                   ..+++-+  ..
T Consensus        76 --Gg~IVDyHgCd~Fpe------rwfdlVvVLr~~~s~LY~RL~sRgY~e-------------------~Ki~eNiecEI  128 (176)
T KOG3347|consen   76 --GGNIVDYHGCDFFPE------RWFDLVVVLRTPNSVLYDRLKSRGYSE-------------------KKIKENIECEI  128 (176)
T ss_pred             --CCcEEeecccCccch------hheeEEEEEecCchHHHHHHHHcCCCH-------------------HHHhhhcchHH
Confidence              678898433221111      246899999999999999999887431                   1122111  12


Q ss_pred             HHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHH
Q 024067          220 YAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALH  258 (273)
Q Consensus       220 y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~  258 (273)
                      |.-..+...+.|... +++++.+ .+.+++...|...+.
T Consensus       129 fgv~~eea~eSy~~~-iV~eL~s-~~~Eem~~ni~ri~~  165 (176)
T KOG3347|consen  129 FGVVLEEARESYSPK-IVVELQS-ETKEEMESNISRILN  165 (176)
T ss_pred             HHHHHHHHHHHcCCc-ceeecCc-CCHHHHHHHHHHHHH
Confidence            222223344566543 6777775 444777666655443

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=99.48  E-value=1.9e-12  Score=110.92  Aligned_cols=168  Identities=9%  Similarity=0.061  Sum_probs=108.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHC--------CC-CCCHHH------
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE--------GK-LVPEDV------  126 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~--------g~-~~~~~~------  126 (273)
                      .++.|.|+|++||||||+++.|++ +|++.+++|.+.++...+++.....+...+..        |. .+....      
T Consensus         4 ~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~vf   82 (208)
T PRK14731          4 LPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVVF   82 (208)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHHh
Confidence            457899999999999999999997 89999999999988777666555555544311        22 122111      


Q ss_pred             ------------HHHHHH----HHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcC
Q 024067          127 ------------IFALLS----KRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAF  190 (273)
Q Consensus       127 ------------~~~ll~----~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~  190 (273)
                                  +...+.    ..+.... .....+|+-+.|.-.+. . +  ...+|.+|++.||++++.+|+..|.. 
T Consensus        83 ~~~~~~~~l~~i~hp~i~~~~~~~i~~~~-~~~~~vvv~e~pLL~e~-~-~--~~~~d~ii~V~a~~e~~~~Rl~~R~~-  156 (208)
T PRK14731         83 SDPEKLGALNRLIHPKVFAAFQRAVDRAA-RRGKRILVKEAAILFES-G-G--DAGLDFIVVVAADTELRLERAVQRGM-  156 (208)
T ss_pred             CCHHHHHHHHHHHCHHHHHHHHHHHHHHH-hcCCCEEEEEeeeeeec-C-c--hhcCCeEEEEECCHHHHHHHHHHcCC-
Confidence                        111122    2222110 11224555444432221 0 0  13579999999999999999999863 


Q ss_pred             CCcccccccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067          191 SPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL  259 (273)
Q Consensus       191 ~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~  259 (273)
                                       .+.+.+.+|+..+......+    ...  -+.|++++++++++++|.+.+..
T Consensus       157 -----------------~s~e~~~~Ri~~q~~~~~~~----~~a--d~vI~N~g~~e~l~~~i~~~~~~  202 (208)
T PRK14731        157 -----------------GSREEIRRRIAAQWPQEKLI----ERA--DYVIYNNGTLDELKAQTEQLYQV  202 (208)
T ss_pred             -----------------CCHHHHHHHHHHcCChHHHH----HhC--CEEEECCCCHHHHHHHHHHHHHH
Confidence                             24567888887655443333    122  25678889999999999988764

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=99.46  E-value=1.4e-12  Score=109.43  Aligned_cols=159  Identities=13%  Similarity=0.052  Sum_probs=95.2

Q ss_pred             EEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHH------------HHHHHHH
Q 024067           68 LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIF------------ALLSKRL  135 (273)
Q Consensus        68 i~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~------------~ll~~~l  135 (273)
                      |.|+.||||||+++.|++.+.-..+.   .+....+..+++|+.+++++......+.....            ..+...+
T Consensus         1 ~EGiDGsGKtT~~~~L~~~l~~~~~~---~~~~~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~l   77 (186)
T PF02223_consen    1 FEGIDGSGKTTQIRLLAEALKEKGYK---VIITFPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPAL   77 (186)
T ss_dssp             EEESTTSSHHHHHHHHHHHHHHTTEE---EEEEESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHcCCc---ccccCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999998544332   11122346678999999999844444432221            1222222


Q ss_pred             HhcccCCcceEEEeCCCCC------------HHHHHHHH-hhC--CCceEEEEccCHHHHHHHHhcCCcCCCcccccccC
Q 024067          136 EEGYYRGESGFILDGIPRT------------RIQAEILD-QIV--DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLG  200 (273)
Q Consensus       136 ~~~~~~~~~g~IlDg~P~~------------~~qa~~l~-~~~--~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~  200 (273)
                      .     .+..+|.|.|..+            ......+. .+.  .||++|+|++++++..+|+..|....         
T Consensus        78 ~-----~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~~~---------  143 (186)
T PF02223_consen   78 K-----RGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRGEKD---------  143 (186)
T ss_dssp             H-----TTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTSSTT---------
T ss_pred             c-----CCCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCCccc---------
Confidence            2     2467888854211            22222222 233  89999999999999999999987510         


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHH
Q 024067          201 GARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGL  253 (273)
Q Consensus       201 ~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I  253 (273)
                          ......   .+.++.+++....+   ++..+.++.||++.++++|.++|
T Consensus       144 ----~~~~~~---~~~~~~~~~~y~~l---~~~~~~~~iid~~~~~e~v~~~I  186 (186)
T PF02223_consen  144 ----DEEEED---LEYLRRVREAYLEL---AKDPNNWVIIDASRSIEEVHEQI  186 (186)
T ss_dssp             ----TTTTHH---HHHHHHHHHHHHHH---HHTTTTEEEEETTS-HHHHHHHH
T ss_pred             ----hHHHHH---HHHHHHHHHHHHHH---HcCCCCEEEEECCCCHHHHHhhC
Confidence                001111   11222222222222   22345799999999999999886

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>PRK13976 thymidylate kinase; Provisional

Probab=99.46  E-value=4.3e-12  Score=108.76  Aligned_cols=169  Identities=9%  Similarity=-0.024  Sum_probs=101.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCC--eechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHH------------HH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVP--HISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVI------------FA  129 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~--~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~------------~~  129 (273)
                      +.|+|.|..||||||+++.|++.+.-.  ...+   +....+.++.+|+.|++++...........            ..
T Consensus         1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v---~~~~eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~~~~   77 (209)
T PRK13976          1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNV---VLTREPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREHFVK   77 (209)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcce---EEeeCCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHH
Confidence            479999999999999999999988432  0111   111234567899999998864222222211            12


Q ss_pred             HHHHHHHhcccCCcceEEEeCCCCCH------------HHHHHHHhh---CCCceEEEEccCHHHHHHHHhcCCcCCCcc
Q 024067          130 LLSKRLEEGYYRGESGFILDGIPRTR------------IQAEILDQI---VDVDLVINFKSIEDQLVKRNLESEAFSPHK  194 (273)
Q Consensus       130 ll~~~l~~~~~~~~~g~IlDg~P~~~------------~qa~~l~~~---~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~  194 (273)
                      .+...+..     +..+|.|.|..+.            .....+...   ..||++|+|++|+++.++|+..++..    
T Consensus        78 ~I~p~l~~-----G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~~~e----  148 (209)
T PRK13976         78 VILPALLQ-----GKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKNGYE----  148 (209)
T ss_pred             HHHHHHHC-----CCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhcccchh----
Confidence            22233332     4567888765431            112223222   26999999999999999999644321    


Q ss_pred             cccccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeC---CCC---hhHHHHHHHHHHHhcCC
Q 024067          195 EFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQV---AAA---PGETWQGLLSALHLQHM  262 (273)
Q Consensus       195 ~~y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~---~~s---~~ev~~~I~~~l~~~~~  262 (273)
                                  ..+.+.+++-.+.|.+..+    .  ..+.++.+|+   +++   +++|.++|.+.+.....
T Consensus       149 ------------~~~~~~l~~v~~~Y~~l~~----~--~~~~~~~id~~~~~~~~~~~e~v~~~i~~~i~~~~~  204 (209)
T PRK13976        149 ------------FMDLEFYDKVRKGFREIVI----K--NPHRCHVITCIDAKDNIEDINSVHLEIVKLLHAVTK  204 (209)
T ss_pred             ------------cccHHHHHHHHHHHHHHHH----h--CCCCeEEEECCCCccCcCCHHHHHHHHHHHHHHHHH
Confidence                        1122333333344543321    1  1235777887   345   99999999998876653

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=99.46  E-value=4.1e-12  Score=108.00  Aligned_cols=166  Identities=16%  Similarity=0.153  Sum_probs=107.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCH------------------
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPE------------------  124 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~------------------  124 (273)
                      ++.|.|+|.|||||||+++.+++ +|++.|++|+++++.+.++++....+.+.+.....-++                  
T Consensus         2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~   80 (201)
T COG0237           2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEA   80 (201)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHH
Confidence            57889999999999999999999 99999999999999988888877777766543221111                  


Q ss_pred             -----HHHHHHHHHHHH-hcccCCcceEEEeCCCCCHHHHHHHHhh-C--CCceEEEEccCHHHHHHHHhcCCcCCCccc
Q 024067          125 -----DVIFALLSKRLE-EGYYRGESGFILDGIPRTRIQAEILDQI-V--DVDLVINFKSIEDQLVKRNLESEAFSPHKE  195 (273)
Q Consensus       125 -----~~~~~ll~~~l~-~~~~~~~~g~IlDg~P~~~~qa~~l~~~-~--~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~  195 (273)
                           .++..++...+. ..+. ...++++-..|       .|.+. .  .+|.||.++||+++.++|++.|..      
T Consensus        81 ~~~Le~i~hPli~~~~~~~~~~-~~~~~~~~eip-------lL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~~------  146 (201)
T COG0237          81 RLKLEKILHPLIRAEIKVVIDG-ARSPYVVLEIP-------LLFEAGGEKYFDKVIVVYAPPEIRLERLMKRDG------  146 (201)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHH-hhCCceEEEch-------HHHhccccccCCEEEEEECCHHHHHHHHHhcCC------
Confidence                 111122222221 0000 01224333333       23222 1  278999999999999999999972      


Q ss_pred             ccccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcC
Q 024067          196 FLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQH  261 (273)
Q Consensus       196 ~y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~  261 (273)
                                  .+.+.+..++..-.    +..+-+...+  +.++++++++.+.++|...+....
T Consensus       147 ------------~~~e~~~~~~~~Q~----~~~ek~~~ad--~vi~n~~~i~~l~~~i~~~~~~~~  194 (201)
T COG0237         147 ------------LDEEDAEARLASQR----DLEEKLALAD--VVIDNDGSIENLLEQIEKLLKELL  194 (201)
T ss_pred             ------------CCHHHHHHHHHhcC----CHHHHHhhcC--ChhhcCCCHHHHHHHHHHHHHHHH
Confidence                        23445555543322    2222233333  456888999999999988887654

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=99.45  E-value=5.5e-12  Score=110.31  Aligned_cols=169  Identities=12%  Similarity=0.057  Sum_probs=106.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCC-----CCCCHH------------
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEG-----KLVPED------------  125 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g-----~~~~~~------------  125 (273)
                      +++|.|+|++||||||+++.|.+++|++.||+|.+.++...++++..+.+.+.+...     +.+...            
T Consensus         1 M~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~   80 (244)
T PTZ00451          1 MILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQA   80 (244)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHH
Confidence            357899999999999999999999999999999999998888887777776655221     122221            


Q ss_pred             ------HHHHHHHHH----HHh-------cccC--CcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhc
Q 024067          126 ------VIFALLSKR----LEE-------GYYR--GESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLE  186 (273)
Q Consensus       126 ------~~~~ll~~~----l~~-------~~~~--~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~  186 (273)
                            ++...+...    +..       .+..  +..-+|+|. |.-.+ ....  ...+|.+|++.||.++..+|+..
T Consensus        81 ~~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~ev-PLL~E-~~~~--~~~~D~iv~V~a~~e~ri~RL~~  156 (244)
T PTZ00451         81 RRALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDA-PTLFE-TKTF--TYFVSASVVVSCSEERQIERLRK  156 (244)
T ss_pred             HHHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEe-chhhc-cCch--hhcCCeEEEEECCHHHHHHHHHH
Confidence                  111122111    110       0000  122456663 32111 0000  12469999999999999999998


Q ss_pred             CCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCC--CChhHHHHHHHHHHHh
Q 024067          187 SEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVA--AAPGETWQGLLSALHL  259 (273)
Q Consensus       187 R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~--~s~~ev~~~I~~~l~~  259 (273)
                      |+.                  -+.+.+++|+..   +. +..+ ..+... +.|+++  ++++++.++|.+.+..
T Consensus       157 R~g------------------~s~eea~~Ri~~---Q~-~~~e-k~~~aD-~VI~N~~~g~~~~L~~~v~~~~~~  207 (244)
T PTZ00451        157 RNG------------------FSKEEALQRIGS---QM-PLEE-KRRLAD-YIIENDSADDLDELRGSVCDCVAW  207 (244)
T ss_pred             cCC------------------CCHHHHHHHHHh---CC-CHHH-HHHhCC-EEEECCCCCCHHHHHHHHHHHHHH
Confidence            852                  134567777754   11 2222 222222 446667  8999999999988754

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=99.45  E-value=1.4e-12  Score=110.72  Aligned_cols=173  Identities=10%  Similarity=0.052  Sum_probs=98.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHH-HHHHHHHHCCCCCCHH----H----------
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALY-KQIANAVNEGKLVPED----V----------  126 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g-~~i~~~l~~g~~~~~~----~----------  126 (273)
                      .++.|+|.|+|||||||+|+.|++++|+.++..+|++|+.+.+....+ .......+.|+.++++    +          
T Consensus         2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~   81 (197)
T PRK12339          2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARA   81 (197)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999998776322211 0111111122222221    1          


Q ss_pred             ----HHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEcc-CHHHHHHHHhcCCcCCCcccccccCC
Q 024067          127 ----IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKS-IEDQLVKRNLESEAFSPHKEFLRLGG  201 (273)
Q Consensus       127 ----~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~-~~e~l~~Rl~~R~~~~~~~~~y~~~~  201 (273)
                          +..++...+.     .+..+|+|+......+.+.... .. ..++++.+ +++++.+|+..|..+.          
T Consensus        82 v~~~L~~va~~~l~-----~G~sVIvEgv~l~p~~~~~~~~-~~-v~~i~l~v~d~e~lr~Rl~~R~~~~----------  144 (197)
T PRK12339         82 IMPGINRVIRRALL-----NGEDLVIESLYFHPPMIDENRT-NN-IRAFYLYIRDAELHRSRLADRINYT----------  144 (197)
T ss_pred             HHHHHHHHHHHHHH-----cCCCEEEEecCcCHHHHHHHHh-cC-eEEEEEEeCCHHHHHHHHHHHhhcc----------
Confidence                1122222222     3577999997666555433221 22 24566655 6788889999887532          


Q ss_pred             CCCCCCCc-HHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHH
Q 024067          202 ARFSAADA-ASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL  257 (273)
Q Consensus       202 ~~~~~~d~-~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l  257 (273)
                          .+++ .+.+.+.+..++...+-+.+--++.+ +-.|+ +.+.++.++.+...+
T Consensus       145 ----~~~~p~~~~~~~~~~ir~i~~~l~~~a~~~~-i~~i~-~~~~~~~~~~~~~~~  195 (197)
T PRK12339        145 ----HKNSPGKRLAEHLPEYRTIMDYSIADARGYN-IKVID-TDNYREARNPLLDPI  195 (197)
T ss_pred             ----cCCCcHHHHHHHHHHHHHHHHHHHHHHHHcC-CCeec-CccHHHHHHHHHHHh
Confidence                1111 22333333333333232333223333 44456 577888888776643

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=99.45  E-value=3.8e-12  Score=103.06  Aligned_cols=112  Identities=20%  Similarity=0.234  Sum_probs=67.2

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCcce
Q 024067           66 WVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESG  145 (273)
Q Consensus        66 Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~~g  145 (273)
                      |+|+|+|||||||+++.|++.+|+++++.++++......  ...+.+..   .|    .+.....-.+.+...  ....+
T Consensus         2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~--~~~~~~~~---~~----~~~~~~~e~~~~~~~--~~~~~   70 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGM--SIPEIFAE---EG----EEGFRELEREVLLLL--LTKEN   70 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCC--CHHHHHHH---HC----HHHHHHHHHHHHHHH--hccCC
Confidence            789999999999999999999999999999888765432  22221111   12    122222211112111  11235


Q ss_pred             EEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCC
Q 024067          146 FILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE  188 (273)
Q Consensus       146 ~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~  188 (273)
                      +||++-..................+|+|++|.+++.+|+..|.
T Consensus        71 ~vi~~g~~~i~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~r~  113 (154)
T cd00464          71 AVIATGGGAVLREENRRLLLENGIVVWLDASPEELLERLARDK  113 (154)
T ss_pred             cEEECCCCccCcHHHHHHHHcCCeEEEEeCCHHHHHHHhccCC
Confidence            5665322111111112222345689999999999999998875

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=99.44  E-value=4.6e-12  Score=106.55  Aligned_cols=163  Identities=13%  Similarity=0.092  Sum_probs=97.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCC-----ChHHHHHHHHHHCCCCCCHHHH-------HHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPR-----SALYKQIANAVNEGKLVPEDVI-------FAL  130 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~-----~~~g~~i~~~l~~g~~~~~~~~-------~~l  130 (273)
                      +..++|+||+||||||+++.|+..++..++..+..+.......     .-.++.....++++........       ..-
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~~   81 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGIE   81 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcHH
Confidence            4578999999999999999999988766555544433211110     0122333334444432211100       011


Q ss_pred             HHHHHHhcccCCcceEEEeCCCCCHHHHHHH-HhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCc
Q 024067          131 LSKRLEEGYYRGESGFILDGIPRTRIQAEIL-DQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADA  209 (273)
Q Consensus       131 l~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l-~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~  209 (273)
                      +...+..     +..+|+||.-   .....+ .....+..+|+|++|.+++.+|+..|..                  .+
T Consensus        82 ~~~~l~~-----g~~VI~~G~~---~~~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~------------------~~  135 (186)
T PRK10078         82 IDLWLHA-----GFDVLVNGSR---AHLPQARARYQSALLPVCLQVSPEILRQRLENRGR------------------EN  135 (186)
T ss_pred             HHHHHhC-----CCEEEEeChH---HHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCC------------------CC
Confidence            3334433     3568888761   111122 2234556789999999999999987742                  12


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067          210 ASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ  260 (273)
Q Consensus       210 ~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~  260 (273)
                      ++.+++|+..+.        +|.. ...+.+|.+++++++.++|...|..-
T Consensus       136 ~~~i~~rl~r~~--------~~~~-ad~~vi~~~~s~ee~~~~i~~~l~~~  177 (186)
T PRK10078        136 ASEINARLARAA--------RYQP-QDCHTLNNDGSLRQSVDTLLTLLHLS  177 (186)
T ss_pred             HHHHHHHHHHhh--------hhcc-CCEEEEeCCCCHHHHHHHHHHHHhhc
Confidence            445777775321        3333 23567787889999999999988643

>TIGR00152 dephospho-CoA kinase

Probab=99.43  E-value=3e-12  Score=107.81  Aligned_cols=159  Identities=16%  Similarity=0.196  Sum_probs=101.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHH------CCCCCCHHH------------
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN------EGKLVPEDV------------  126 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~------~g~~~~~~~------------  126 (273)
                      +|+|+|++||||||+++.|++..|+++|++|++.++.+.++++....+.+.+.      +|. +....            
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~-idr~~L~~~vf~~~~~~   79 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGE-LDRKALGERVFNDPEEL   79 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCC-CCHHHHHHHHhCCHHHH
Confidence            47899999999999999999998899999999999988888777776665543      232 22111            


Q ss_pred             ------H----HHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccc
Q 024067          127 ------I----FALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEF  196 (273)
Q Consensus       127 ------~----~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~  196 (273)
                            +    ...+.+.+...  .....+|+-+.|.-...  .+  ...+|.+|+++++.+++.+|+..|...      
T Consensus        80 ~~le~ilhP~i~~~i~~~i~~~--~~~~~~vvi~~pll~e~--~~--~~~~D~vv~V~~~~~~~~~Rl~~R~~~------  147 (188)
T TIGR00152        80 KWLNNLLHPLIREWMKKLLAQF--QSKLAYVLLDVPLLFEN--KL--RSLCDRVIVVDVSPQLQLERLMQRDNL------  147 (188)
T ss_pred             HHHHHhhCHHHHHHHHHHHHHh--hcCCCEEEEEchHhhhC--Cc--HHhCCEEEEEECCHHHHHHHHHHcCCC------
Confidence                  1    11122222221  11112444444433221  01  125789999999999999999998621      


Q ss_pred             cccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHH
Q 024067          197 LRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLL  254 (273)
Q Consensus       197 y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~  254 (273)
                                  +.+.+.+|+....    +..+.-...+  +.|+++++++++..++.
T Consensus       148 ------------s~~~~~~r~~~q~----~~~~~~~~ad--~vI~N~~~~e~l~~~~~  187 (188)
T TIGR00152       148 ------------TEEEVQKRLASQM----DIEERLARAD--DVIDNSATLADLVKQLE  187 (188)
T ss_pred             ------------CHHHHHHHHHhcC----CHHHHHHhCC--EEEECCCCHHHHHHHHh
Confidence                        2456677766542    2222111222  55677899999988874

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PRK07933 thymidylate kinase; Validated

Probab=99.43  E-value=4.3e-12  Score=109.15  Aligned_cols=172  Identities=18%  Similarity=0.097  Sum_probs=96.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCC---CeechhHHHHHHccCCChHHHHHHHHHHCC--CCC--CHHHHH--------
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEV---PHISMGSLVRQELSPRSALYKQIANAVNEG--KLV--PEDVIF--------  128 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~---~~is~~dllr~~~~~~~~~g~~i~~~l~~g--~~~--~~~~~~--------  128 (273)
                      +.|+|.|+.||||||+++.|++.+.-   .++-+    ++-..++++.++.+++.+...  ...  +.....        
T Consensus         1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~----~~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~   76 (213)
T PRK07933          1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATL----AFPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRAG   76 (213)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE----ecCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhhh
Confidence            47999999999999999999999843   22211    110013455677777776532  111  111100        


Q ss_pred             --HHHHHHHHhcccCCcceEEEeCCCCCH--HHH---------------HHHHhh----CCCceEEEEccCHHHHHHHHh
Q 024067          129 --ALLSKRLEEGYYRGESGFILDGIPRTR--IQA---------------EILDQI----VDVDLVINFKSIEDQLVKRNL  185 (273)
Q Consensus       129 --~ll~~~l~~~~~~~~~g~IlDg~P~~~--~qa---------------~~l~~~----~~~d~vI~L~~~~e~l~~Rl~  185 (273)
                        ..+...+.     .+..+|.|.|..+.  .|.               ..++..    ..||++|+|++++++.++|+.
T Consensus        77 ~~~~I~p~l~-----~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~  151 (213)
T PRK07933         77 ARDELAGLLA-----AHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERAR  151 (213)
T ss_pred             hHHHHHHHHh-----CCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHH
Confidence              11222222     24567888775442  221               112211    269999999999999999998


Q ss_pred             cCCcCCCcccccccCCCCCCCCCcHHHHHHHH-HHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHH
Q 024067          186 ESEAFSPHKEFLRLGGARFSAADAASAWKEKF-RIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL  257 (273)
Q Consensus       186 ~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl-~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l  257 (273)
                      +|.... .+..      ..+-+... .+.+++ +.|.+..+    .+ ....++.||++.++++|.++|...|
T Consensus       152 ~R~~~~-~~~~------~d~~E~~~-~f~~~v~~~Y~~~~~----~~-~~~~~~~ida~~~~e~v~~~i~~~~  211 (213)
T PRK07933        152 RRAAQD-ADRA------RDAYERDD-GLQQRTGAVYAELAA----QG-WGGPWLVVDPDVDPAALAARLAAAL  211 (213)
T ss_pred             hhcccc-CCcc------cccccccH-HHHHHHHHHHHHHHH----hc-CCCCeEEeCCCCCHHHHHHHHHHHh
Confidence            885310 0000      00001111 222232 33433221    11 1236889999999999999998875

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=99.43  E-value=9.4e-13  Score=105.31  Aligned_cols=114  Identities=20%  Similarity=0.228  Sum_probs=74.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChH---HHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSAL---YKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~---g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~  141 (273)
                      .|+++|+|||||||+++.|++.++..+|+.|++.........+.   .....+.       -.+.+...+...+..    
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~----   69 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEER-------AYQILNAAIRKALRN----   69 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHH-------HHHHHHHHHHHHHHT----
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHH-------HHHHHHHHHHHHHHc----
Confidence            47899999999999999999999999999988766443211110   0000000       011233444444543    


Q ss_pred             CcceEEEeCCCCCHHHHHHHHhh----CCCceEEEEccCHHHHHHHHhcCCcC
Q 024067          142 GESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAF  190 (273)
Q Consensus       142 ~~~g~IlDg~P~~~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~  190 (273)
                       +..+|+|.......+...+...    ..+..+|+|+++++++.+|+..|...
T Consensus        70 -g~~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~  121 (143)
T PF13671_consen   70 -GNSVVVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNRE  121 (143)
T ss_dssp             -T-EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHCC
T ss_pred             -CCCceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCCc
Confidence             4669999776666665555433    33568999999999999999998753

...

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=99.43  E-value=7e-12  Score=106.88  Aligned_cols=170  Identities=12%  Similarity=0.097  Sum_probs=105.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHH-----CCCCCCH------------
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-----EGKLVPE------------  124 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~-----~g~~~~~------------  124 (273)
                      .|..|.|+|++||||||+++.|++++|++++++|.+.++.+.+ ++..+.+.+.+.     +|. +..            
T Consensus         5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~-~~~~~~i~~~fG~~i~~~g~-idR~~L~~~vF~d~~   82 (204)
T PRK14733          5 NTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKK-PSVIKKIAEKFGDEIVMNKQ-INRAMLRAIITESKE   82 (204)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCc-hHHHHHHHHHhCHHhccCCC-cCHHHHHHHHhCCHH
Confidence            4678999999999999999999999999999999999887665 445555554432     222 221            


Q ss_pred             ------HHHHHHHHHHHHhccc-CCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCccccc
Q 024067          125 ------DVIFALLSKRLEEGYY-RGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFL  197 (273)
Q Consensus       125 ------~~~~~ll~~~l~~~~~-~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y  197 (273)
                            +++...+.+.+..... ....-+|+|. |.-.+..  +.....+|.+|++.||+++.++|+..|...       
T Consensus        83 ~~~~Le~i~HP~V~~~~~~~~~~~~~~~vv~ei-pLL~E~~--~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd~~-------  152 (204)
T PRK14733         83 AKKWLEDYLHPVINKEIKKQVKESDTVMTIVDI-PLLGPYN--FRHYDYLKKVIVIKADLETRIRRLMERDGK-------  152 (204)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHhcCCCeEEEEe-chhhhcc--CchhhhCCEEEEEECCHHHHHHHHHHcCCC-------
Confidence                  1222222222221100 1123355653 3221110  000124789999999999999999988632       


Q ss_pred             ccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCC-ChhHHHHHHHHHHHhc
Q 024067          198 RLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAA-APGETWQGLLSALHLQ  260 (273)
Q Consensus       198 ~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~-s~~ev~~~I~~~l~~~  260 (273)
                                 +.+.+.+|+..-    .+..+.-...+  +.|+.++ +.+++.++|...++.-
T Consensus       153 -----------s~~~a~~ri~~Q----~~~eek~~~aD--~VI~N~g~~~~~l~~~~~~~~~~~  199 (204)
T PRK14733        153 -----------NRQQAVAFINLQ----ISDKEREKIAD--FVIDNTELTDQELESKLITTINEI  199 (204)
T ss_pred             -----------CHHHHHHHHHhC----CCHHHHHHhCC--EEEECcCCCHHHHHHHHHHHHHHH
Confidence                       244556665432    12233233333  5577788 9999999999888764

>PRK14738 gmk guanylate kinase; Provisional

Probab=99.41  E-value=1.6e-12  Score=111.27  Aligned_cols=172  Identities=11%  Similarity=0.116  Sum_probs=102.5

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHh-CCCeechhHHHHHHcc-----CCChH----HHHHHHHHHCCCCCCHH----
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQELS-----PRSAL----YKQIANAVNEGKLVPED----  125 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~-g~~~is~~dllr~~~~-----~~~~~----g~~i~~~l~~g~~~~~~----  125 (273)
                      |.++..|+|+||+||||||+++.|.+.. .+.+. .  ......+     .+..+    -+.+...+.+|..+...    
T Consensus        10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~-~--~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g   86 (206)
T PRK14738         10 PAKPLLVVISGPSGVGKDAVLARMRERKLPFHFV-V--TATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYG   86 (206)
T ss_pred             CCCCeEEEEECcCCCCHHHHHHHHHhcCCccccc-c--cccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcC
Confidence            4578899999999999999999998653 12111 0  0111110     01011    12344455555443321    


Q ss_pred             ----HHHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEcc--CHHHHHHHHhcCCcCCCccccccc
Q 024067          126 ----VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKS--IEDQLVKRNLESEAFSPHKEFLRL  199 (273)
Q Consensus       126 ----~~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~--~~e~l~~Rl~~R~~~~~~~~~y~~  199 (273)
                          +-...+...+..     +..+|+|.-+.   .+..+.. ..||.++++.+  +.+++.+|+..|..          
T Consensus        87 ~~YGt~~~~i~~~~~~-----g~~vi~~~~~~---g~~~l~~-~~pd~~~if~~pps~e~l~~Rl~~R~~----------  147 (206)
T PRK14738         87 NYYGVPKAPVRQALAS-----GRDVIVKVDVQ---GAASIKR-LVPEAVFIFLAPPSMDELTRRLELRRT----------  147 (206)
T ss_pred             ceecCCHHHHHHHHHc-----CCcEEEEcCHH---HHHHHHH-hCCCeEEEEEeCCCHHHHHHHHHHcCC----------
Confidence                111234444443     35678886542   3333433 34777666665  46788999998862          


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcCCCCCC
Q 024067          200 GGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHMNAVS  266 (273)
Q Consensus       200 ~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~~~~~~  266 (273)
                              ++.+.+.+|+..+.......     ....++.+|++.++++++++|...|.....+..+
T Consensus       148 --------~~~~~~~~Rl~~~~~e~~~~-----~~~~~~iId~~~~~e~v~~~i~~~l~~~~~~~~~  201 (206)
T PRK14738        148 --------ESPEELERRLATAPLELEQL-----PEFDYVVVNPEDRLDEAVAQIMAIISAEKSRVHP  201 (206)
T ss_pred             --------CCHHHHHHHHHHHHHHHhcc-----cCCCEEEECCCCCHHHHHHHHHHHHHHHhcccCc
Confidence                    23567888888765433211     1124788999999999999999999887554433

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.40  E-value=5.3e-12  Score=100.55  Aligned_cols=157  Identities=15%  Similarity=0.137  Sum_probs=109.5

Q ss_pred             EcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHH---HHHHHhcccCCcce
Q 024067           69 IGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALL---SKRLEEGYYRGESG  145 (273)
Q Consensus        69 ~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll---~~~l~~~~~~~~~g  145 (273)
                      +|..||||||+++.||+++|+.+|+-|++.-.+.         |. -+..|.++.|+--...|   ..++.+.. .++..
T Consensus         1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aN---------i~-KM~~GiPL~DdDR~pWL~~l~~~~~~~~-~~~~~   69 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPAN---------IE-KMSAGIPLNDDDRWPWLEALGDAAASLA-QKNKH   69 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcCCceecccccCCHHH---------HH-HHhCCCCCCcchhhHHHHHHHHHHHHhh-cCCCc
Confidence            5999999999999999999999999998775421         21 26789888886544433   34443321 23344


Q ss_pred             EEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHhhH
Q 024067          146 FILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGK  225 (273)
Q Consensus       146 ~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~~~~  225 (273)
                      .||-+........+.|....+--.+|||+.+.+++.+|+..|..+.          +|      .+.++.+|...+.   
T Consensus        70 ~vi~CSALKr~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~gHF----------M~------~~ll~SQfa~LE~---  130 (161)
T COG3265          70 VVIACSALKRSYRDLLREANPGLRFVYLDGDFDLILERMKARKGHF----------MP------ASLLDSQFATLEE---  130 (161)
T ss_pred             eEEecHHHHHHHHHHHhccCCCeEEEEecCCHHHHHHHHHhcccCC----------CC------HHHHHHHHHHhcC---
Confidence            6666666666667777543322469999999999999999998654          22      3455655554332   


Q ss_pred             HHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067          226 SLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ  260 (273)
Q Consensus       226 ~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~  260 (273)
                      |-.     ...++.||.+.+++++.+++...|...
T Consensus       131 P~~-----de~vi~idi~~~~e~vv~~~~~~l~~~  160 (161)
T COG3265         131 PGA-----DEDVLTIDIDQPPEEVVAQALAWLKEG  160 (161)
T ss_pred             CCC-----CCCEEEeeCCCCHHHHHHHHHHHHhcc
Confidence            111     124899999999999999999988753

>smart00072 GuKc Guanylate kinase homologues

Probab=99.40  E-value=1.6e-12  Score=109.18  Aligned_cols=165  Identities=13%  Similarity=0.101  Sum_probs=105.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh--CC--CeechhHHHHHHccCCChH----HHHHHHHHHCCCCCCHHHH-------
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLL--EV--PHISMGSLVRQELSPRSAL----YKQIANAVNEGKLVPEDVI-------  127 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~--g~--~~is~~dllr~~~~~~~~~----g~~i~~~l~~g~~~~~~~~-------  127 (273)
                      ++.|+|+||+||||+|+++.|.+.+  ++  .+..+..-.+.....+..+    .+++...+..|..++....       
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt   81 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT   81 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCccc
Confidence            4678999999999999999999986  23  2222211111111112222    2677778888877654322       


Q ss_pred             -HHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEc-cCHHHHHHHHhcCCcCCCcccccccCCCCCC
Q 024067          128 -FALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFK-SIEDQLVKRNLESEAFSPHKEFLRLGGARFS  205 (273)
Q Consensus       128 -~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~-~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~  205 (273)
                       ...+.+.+..     ++.+|+|+.|....|.....  ..| .+|++. .+.+++.+|+..|.                 
T Consensus        82 ~~~~i~~~~~~-----~~~~ild~~~~~~~~l~~~~--~~~-~vIfi~~~s~~~l~~rl~~R~-----------------  136 (184)
T smart00072       82 SKETIRQVAEQ-----GKHCLLDIDPQGVKQLRKAQ--LYP-IVIFIAPPSSEELERRLRGRG-----------------  136 (184)
T ss_pred             CHHHHHHHHHc-----CCeEEEEECHHHHHHHHHhC--CCc-EEEEEeCcCHHHHHHHHHhcC-----------------
Confidence             2355555554     47899999988887765432  222 788887 56677999998875                 


Q ss_pred             CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067          206 AADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ  260 (273)
Q Consensus       206 ~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~  260 (273)
                       +++.+.+++|+........    .|...+  ..|.+ .+.++.+++|...|...
T Consensus       137 -~~~~~~i~~rl~~a~~~~~----~~~~fd--~~I~n-~~l~~~~~~l~~~i~~~  183 (184)
T smart00072      137 -TETAERIQKRLAAAQKEAQ----EYHLFD--YVIVN-DDLEDAYEELKEILEAE  183 (184)
T ss_pred             -CCCHHHHHHHHHHHHHHHh----hhccCC--EEEEC-cCHHHHHHHHHHHHHhc
Confidence             3456788999887544322    232222  34453 47999999999988653

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.39  E-value=2.3e-12  Score=103.27  Aligned_cols=162  Identities=16%  Similarity=0.178  Sum_probs=113.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHH---HHHhccc
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSK---RLEEGYY  140 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~---~l~~~~~  140 (273)
                      -.|+++|+.||||||+++.|++++++.+++.||+...+.          .+-+.+|.++.|+--..++++   .+... .
T Consensus        13 ~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~N----------veKM~~GipLnD~DR~pWL~~i~~~~~~~-l   81 (191)
T KOG3354|consen   13 YVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPAN----------VEKMTQGIPLNDDDRWPWLKKIAVELRKA-L   81 (191)
T ss_pred             eeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHH----------HHHHhcCCCCCcccccHHHHHHHHHHHHH-h
Confidence            368899999999999999999999999999999875432          233678888877654444432   22111 1


Q ss_pred             CCcceEEEeCCCCCHHHHHHHHhhC-------CC---ceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcH
Q 024067          141 RGESGFILDGIPRTRIQAEILDQIV-------DV---DLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAA  210 (273)
Q Consensus       141 ~~~~g~IlDg~P~~~~qa~~l~~~~-------~~---d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~  210 (273)
                      ..++++||-+........++|.+..       .|   -.+|+|.++.|++.+|+..|..+.          +|      .
T Consensus        82 ~~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gHF----------Mp------~  145 (191)
T KOG3354|consen   82 ASGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGHF----------MP------A  145 (191)
T ss_pred             hcCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhccccc----------CC------H
Confidence            2468999988777777777776521       12   368999999999999999998653          22      3


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHHHHh
Q 024067          211 SAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVA-AAPGETWQGLLSALHL  259 (273)
Q Consensus       211 e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~-~s~~ev~~~I~~~l~~  259 (273)
                      +.++.++...+.   |-.    ....++.|+.. .+++++...|...+..
T Consensus       146 ~lleSQf~~LE~---p~~----~e~div~isv~~~~~e~iv~tI~k~~~~  188 (191)
T KOG3354|consen  146 DLLESQFATLEA---PDA----DEEDIVTISVKTYSVEEIVDTIVKMVAL  188 (191)
T ss_pred             HHHHHHHHhccC---CCC----CccceEEEeeccCCHHHHHHHHHHHHHh
Confidence            455555544321   110    11247888887 7999999988877754

>PRK07261 topology modulation protein; Provisional

Probab=99.39  E-value=1.1e-12  Score=109.01  Aligned_cols=101  Identities=21%  Similarity=0.229  Sum_probs=75.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~  143 (273)
                      ++|+|+|+|||||||+|+.|++.+++++++.|.+.+..   +             ....+.+.....+...+.+      
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~---~-------------~~~~~~~~~~~~~~~~~~~------   58 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQP---N-------------WQERDDDDMIADISNFLLK------   58 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecc---c-------------cccCCHHHHHHHHHHHHhC------
Confidence            47999999999999999999999999999998765421   0             0112344455555555543      


Q ss_pred             ceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCc
Q 024067          144 SGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA  189 (273)
Q Consensus       144 ~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~  189 (273)
                      ..||+||......+...+.   ..|.+|+|++|..+++.|+..|..
T Consensus        59 ~~wIidg~~~~~~~~~~l~---~ad~vI~Ld~p~~~~~~R~lkR~~  101 (171)
T PRK07261         59 HDWIIDGNYSWCLYEERMQ---EADQIIFLNFSRFNCLYRAFKRYL  101 (171)
T ss_pred             CCEEEcCcchhhhHHHHHH---HCCEEEEEcCCHHHHHHHHHHHHH
Confidence            3499999987655444444   568999999999999999988864

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=99.39  E-value=9.7e-13  Score=107.87  Aligned_cols=153  Identities=19%  Similarity=0.246  Sum_probs=92.6

Q ss_pred             CCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhcccCCcceEEEe-
Q 024067           72 PGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYRGESGFILD-  149 (273)
Q Consensus        72 pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~-~g~~~~~~~~~~ll~~~l~~~~~~~~~g~IlD-  149 (273)
                      |||||||+++.||+.+|++++++|+++.+.      .|+.+.+++. .|.....+...+++.+.+..      .+.||. 
T Consensus         1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~------~g~si~~i~~~~G~~~fr~~E~~~l~~l~~~------~~~VIa~   68 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEER------TGMSISEIFAEEGEEAFRELESEALRELLKE------NNCVIAC   68 (158)
T ss_dssp             TTSSHHHHHHHHHHHHTSEEEEHHHHHHHH------HTSHHHHHHHHHHHHHHHHHHHHHHHHHHCS------SSEEEEE
T ss_pred             CCCcHHHHHHHHHHHhCCCccccCHHHHHH------hCCcHHHHHHcCChHHHHHHHHHHHHHHhcc------CcEEEeC
Confidence            799999999999999999999999999764      3345555554 33322333444555443332      245444 


Q ss_pred             --CCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHhhHHH
Q 024067          150 --GIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSL  227 (273)
Q Consensus       150 --g~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l  227 (273)
                        |.+......+.|.   ....+|+|+++.+++.+|+..+...|             ...+... .......+. .   .
T Consensus        69 GGG~~~~~~~~~~L~---~~g~vI~L~~~~~~l~~Rl~~~~~Rp-------------~l~~~~~-~~~~~~~~~-~---R  127 (158)
T PF01202_consen   69 GGGIVLKEENRELLK---ENGLVIYLDADPEELAERLRARDNRP-------------LLKGKME-HEEILELLF-E---R  127 (158)
T ss_dssp             -TTGGGSHHHHHHHH---HHSEEEEEE--HHHHHHHHHHHCTSG-------------GTCSHHH-HHHHHHHHH-H---H
T ss_pred             CCCCcCcHHHHHHHH---hCCEEEEEeCCHHHHHHHHhCCCCCC-------------CCCCCCh-HHHHHHHHH-H---H
Confidence              2555666666665   33479999999999999997665311             1111111 111122222 1   2


Q ss_pred             HHHHHhcCcEEEEeCCCCh-hHHHHHHHHHHH
Q 024067          228 EDYYSKQRKLLNFQVAAAP-GETWQGLLSALH  258 (273)
Q Consensus       228 ~~~y~~~~~~~~id~~~s~-~ev~~~I~~~l~  258 (273)
                      ...|.+... +.++.+..+ +++.++|.+.|.
T Consensus       128 ~~~Y~~~a~-~~v~~~~~~~~~i~~~i~~~l~  158 (158)
T PF01202_consen  128 EPLYEQAAD-IVVDTDGSPPEEIAEEILEFLK  158 (158)
T ss_dssp             HHHHHHHSS-EEEETSSCHHHHHHHHHHHHH-
T ss_pred             HHHHHhcCe-EEEeCCCCCHHHHHHHHHHHhC
Confidence            334555443 557777765 999999998873

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=99.38  E-value=1e-11  Score=105.45  Aligned_cols=165  Identities=11%  Similarity=0.099  Sum_probs=104.8

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCC-----CCCH----------------
Q 024067           66 WVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGK-----LVPE----------------  124 (273)
Q Consensus        66 Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~-----~~~~----------------  124 (273)
                      |.|+|++||||||+++.|++ +|+++|+.|++.++.+.++++..+.+.+.+...-     .+..                
T Consensus         2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~~   80 (196)
T PRK14732          2 IGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLKA   80 (196)
T ss_pred             EEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHHH
Confidence            78999999999999999965 7999999999999888888777777776553221     1221                


Q ss_pred             --HHHHHHHHHHHHhcc-cCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCC
Q 024067          125 --DVIFALLSKRLEEGY-YRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGG  201 (273)
Q Consensus       125 --~~~~~ll~~~l~~~~-~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~  201 (273)
                        +++...+.+.+.... ......+++-..|.-.+. ..   ...+|.+|++++|+++..+|+..|...           
T Consensus        81 L~~i~hP~v~~~~~~~~~~~~~~~~vi~e~pLL~E~-~~---~~~~D~vi~V~a~~e~r~~RL~~R~g~-----------  145 (196)
T PRK14732         81 LNELIHPLVRKDFQKILQTTAEGKLVIWEVPLLFET-DA---YTLCDATVTVDSDPEESILRTISRDGM-----------  145 (196)
T ss_pred             HHHHhhHHHHHHHHHHHHHHhcCCcEEEEeeeeeEc-Cc---hhhCCEEEEEECCHHHHHHHHHHcCCC-----------
Confidence              112222222222100 001123444444543221 00   124799999999999999999998521           


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067          202 ARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL  259 (273)
Q Consensus       202 ~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~  259 (273)
                             +.+.+..|+..  +  .+..++-...+  +.|+++++++++..++.+.+..
T Consensus       146 -------s~e~a~~ri~~--Q--~~~~~k~~~aD--~vI~N~~~~~~l~~~v~~l~~~  190 (196)
T PRK14732        146 -------KKEDVLARIAS--Q--LPITEKLKRAD--YIVRNDGNREGLKEECKILYST  190 (196)
T ss_pred             -------CHHHHHHHHHH--c--CCHHHHHHhCC--EEEECCCCHHHHHHHHHHHHHH
Confidence                   34566777654  1  13333333334  4567788999999999987653

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=99.38  E-value=5e-12  Score=105.75  Aligned_cols=119  Identities=21%  Similarity=0.250  Sum_probs=79.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCC-----CCH---------------
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL-----VPE---------------  124 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~-----~~~---------------  124 (273)
                      +|.|+|+|||||||+++.|++ +|+++|++|++.++...++.+.+..+.+.+..+..     +..               
T Consensus         1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~   79 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK   79 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence            478999999999999999999 99999999999999888888888888877643221     211               


Q ss_pred             ---HHHHHHHHHHHHhccc-CCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCC
Q 024067          125 ---DVIFALLSKRLEEGYY-RGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE  188 (273)
Q Consensus       125 ---~~~~~ll~~~l~~~~~-~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~  188 (273)
                         .++...+...+..... .....+++-..|.-.+..  +  ...+|.+|+++||+++..+|+..|.
T Consensus        80 ~l~~i~hp~i~~~~~~~~~~~~~~~~vive~plL~e~~--~--~~~~D~vv~V~a~~~~ri~Rl~~Rd  143 (179)
T cd02022          80 KLEAITHPLIRKEIEEQLAEARKEKVVVLDIPLLFETG--L--EKLVDRVIVVDAPPEIQIERLMKRD  143 (179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCEEEEEehHhhcCC--c--HHhCCeEEEEECCHHHHHHHHHHcC
Confidence               1222233333322100 011244443344322210  1  1257899999999999999999886

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=99.37  E-value=1.6e-11  Score=102.48  Aligned_cols=165  Identities=13%  Similarity=0.185  Sum_probs=104.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHhcc
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPED---VIFALLSKRLEEGY  139 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~---~~~~ll~~~l~~~~  139 (273)
                      +..++|+|++||||||+++.|+..++..+++.+++....         .++.+ ..|....++   .....+........
T Consensus         3 ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~---------~~r~~-~~g~~~~~~~~~~~~~~~~~~~~~~~   72 (176)
T PRK09825          3 GESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAK---------NIDKM-SQGIPLTDEDRLPWLERLNDASYSLY   72 (176)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHh---------HHHHH-hcCCCCCcccchHHHHHHHHHHHHHH
Confidence            457899999999999999999999999999887653210         11111 122222221   11111111111100


Q ss_pred             cCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHH
Q 024067          140 YRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRI  219 (273)
Q Consensus       140 ~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~  219 (273)
                      .....|+|+..+. ...+.+.+.....+..+|+|+++.+++.+|+..|..+.                .+.+.+..++..
T Consensus        73 ~~~~~g~iv~s~~-~~~~R~~~r~~~~~~~~v~l~a~~~~l~~Rl~~R~~~~----------------~~~~vl~~Q~~~  135 (176)
T PRK09825         73 KKNETGFIVCSSL-KKQYRDILRKSSPNVHFLWLDGDYETILARMQRRAGHF----------------MPPDLLQSQFDA  135 (176)
T ss_pred             hcCCCEEEEEEec-CHHHHHHHHhhCCCEEEEEEeCCHHHHHHHHhcccCCC----------------CCHHHHHHHHHH
Confidence            0125788885553 44444555555666789999999999999999997421                245666666655


Q ss_pred             HHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcC
Q 024067          220 YAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQH  261 (273)
Q Consensus       220 y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~  261 (273)
                      |+..       ......|+.||++.+++++..++...+....
T Consensus       136 ~e~~-------~~~e~~~~~~d~~~~~~~~~~~~~~~~~~~~  170 (176)
T PRK09825        136 LERP-------CADEHDIARIDVNHDIENVTEQCRQAVQAFR  170 (176)
T ss_pred             cCCC-------CCCcCCeEEEECCCCHHHHHHHHHHHHHHHH
Confidence            4421       1112249999999999999999988887653

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=99.36  E-value=1.2e-11  Score=108.62  Aligned_cols=158  Identities=20%  Similarity=0.241  Sum_probs=95.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhC-----CCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcc
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY  139 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~g-----~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~  139 (273)
                      .|+|+|+|||||||+|+.|++.++     +.+++. |.+++........+   ...       ..+.....+...+..  
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~-D~lr~~~~~~~~~~---e~~-------~~~~~~~~i~~~l~~--   67 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT-DLIRESFPVWKEKY---EEF-------IRDSTLYLIKTALKN--   67 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc-HHHHHHhHHhhHHh---HHH-------HHHHHHHHHHHHHhC--
Confidence            478999999999999999999873     445655 44554331100101   111       112333445555543  


Q ss_pred             cCCcceEEEeCCCCCHHHHHHHH----hhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHH
Q 024067          140 YRGESGFILDGIPRTRIQAEILD----QIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKE  215 (273)
Q Consensus       140 ~~~~~g~IlDg~P~~~~qa~~l~----~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~  215 (273)
                         +..+|+|+......+...+.    ....+..+|+|++|.+++.+|...|...                 ..++.+.+
T Consensus        68 ---~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~~-----------------~~~~~i~~  127 (249)
T TIGR03574        68 ---KYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGEK-----------------IPNEVIKD  127 (249)
T ss_pred             ---CCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCCC-----------------CCHHHHHH
Confidence               34689998765444333332    2245668999999999999999877521                 12345555


Q ss_pred             HHHHHHHhhHHHHHHHHhcCcEEEEeCCC--ChhHHHHHHHHHHHh
Q 024067          216 KFRIYAEQGKSLEDYYSKQRKLLNFQVAA--APGETWQGLLSALHL  259 (273)
Q Consensus       216 rl~~y~~~~~~l~~~y~~~~~~~~id~~~--s~~ev~~~I~~~l~~  259 (273)
                      .+..|+.   |...|+-+ ...++||++.  +++++++.|...+..
T Consensus       128 l~~r~e~---p~~~~~wd-~~~~~vd~~~~~~~~ei~~~i~~~~~~  169 (249)
T TIGR03574       128 MYEKFDE---PGTKYSWD-LPDLTIDTTKKIDYNEILEEILEISEN  169 (249)
T ss_pred             HHHhhCC---CCCCCCcc-CceEEecCCCCCCHHHHHHHHHHHhhc
Confidence            5555432   21111111 2467888876  678999999988764

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]

Probab=99.36  E-value=5.8e-11  Score=99.14  Aligned_cols=167  Identities=17%  Similarity=0.191  Sum_probs=112.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCH-----HHH-----------
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPE-----DVI-----------  127 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~-----~~~-----------  127 (273)
                      ..|-++|..||||||+++.+- .+|++.|++|.+.|+...++++.+..|.+.+....+.++     +.+           
T Consensus         2 ~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r   80 (225)
T KOG3220|consen    2 LIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKR   80 (225)
T ss_pred             eEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHH
Confidence            467799999999999999997 899999999999999999999999999888755433322     111           


Q ss_pred             ---HH--------HHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccc
Q 024067          128 ---FA--------LLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEF  196 (273)
Q Consensus       128 ---~~--------ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~  196 (273)
                         ..        .+.+.+..-...++.-+|+| .|.-++- . ++.  .+..+|.+.|+.++-++|+..|..       
T Consensus        81 ~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlD-iPLLFE~-~-~~~--~~~~tvvV~cd~~~Ql~Rl~~Rd~-------  148 (225)
T KOG3220|consen   81 QALNKITHPAIRKEMFKEILKLLLRGYRVIVLD-IPLLFEA-K-LLK--ICHKTVVVTCDEELQLERLVERDE-------  148 (225)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEe-chHHHHH-h-HHh--heeeEEEEEECcHHHHHHHHHhcc-------
Confidence               11        11111111122344555665 4543332 2 222  344688899999999999999872       


Q ss_pred             cccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067          197 LRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ  260 (273)
Q Consensus       197 y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~  260 (273)
                                 -+++..+.|++.-    .|+.+.-+..  -+.+|++++++++.++|...+..-
T Consensus       149 -----------lse~dAe~Rl~sQ----mp~~~k~~~a--~~Vi~Nng~~~~l~~qv~~v~~~~  195 (225)
T KOG3220|consen  149 -----------LSEEDAENRLQSQ----MPLEKKCELA--DVVIDNNGSLEDLYEQVEKVLALL  195 (225)
T ss_pred             -----------ccHHHHHHHHHhc----CCHHHHHHhh--heeecCCCChHHHHHHHHHHHHHh
Confidence                       2355666666532    2343333333  266899999999999998887654

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=99.36  E-value=1.9e-11  Score=114.39  Aligned_cols=169  Identities=17%  Similarity=0.170  Sum_probs=104.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCC-----CCCHH-------------
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGK-----LVPED-------------  125 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~-----~~~~~-------------  125 (273)
                      ++|.|+|++||||||+++.|++ +|+++|++|.+.++.+.+++.....+.+.+..+.     .+...             
T Consensus         2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~   80 (395)
T PRK03333          2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR   80 (395)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence            5799999999999999999987 8999999999999888877666566665543321     12211             


Q ss_pred             -----HHHHHHHHHHHhcc-cCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCccccccc
Q 024067          126 -----VIFALLSKRLEEGY-YRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRL  199 (273)
Q Consensus       126 -----~~~~ll~~~l~~~~-~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~  199 (273)
                           ++...+..++.+.. ......+|+.+.|.-.+..  +  ...+|.+|++++|.++.++|+..|+.-         
T Consensus        81 ~~le~i~hP~I~~~i~~~i~~~~~~~vvv~eipLL~E~~--~--~~~~D~iI~V~ap~e~ri~Rl~~rRg~---------  147 (395)
T PRK03333         81 AVLNGIVHPLVGARRAELIAAAPEDAVVVEDIPLLVESG--M--APLFHLVVVVDADVEVRVRRLVEQRGM---------  147 (395)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecCC--c--hhhCCEEEEEECCHHHHHHHHHhcCCC---------
Confidence                 11122222222110 0123457776666432210  1  125789999999999999999885421         


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcC
Q 024067          200 GGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQH  261 (273)
Q Consensus       200 ~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~  261 (273)
                               +.+....++....    +.. ...+.. -+.|+++++++++..++...+....
T Consensus       148 ---------s~~~a~~ri~~Q~----~~e-~k~~~A-D~vIdN~~s~e~l~~~v~~~l~~~~  194 (395)
T PRK03333        148 ---------AEADARARIAAQA----SDE-QRRAVA-DVWLDNSGTPDELVEAVRALWADRL  194 (395)
T ss_pred             ---------CHHHHHHHHHhcC----ChH-HHHHhC-CEEEECCCCHHHHHHHHHHHHHHHH
Confidence                     1223334432210    011 111212 3567888999999999988876543

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=99.35  E-value=1.3e-11  Score=103.27  Aligned_cols=119  Identities=22%  Similarity=0.240  Sum_probs=77.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCC-----CCCH--------------
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGK-----LVPE--------------  124 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~-----~~~~--------------  124 (273)
                      +.|.|+|+.||||||+++.|++ +|+++|++|.+.++.+.++++....+.+.+....     .+..              
T Consensus         1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~   79 (180)
T PF01121_consen    1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL   79 (180)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence            4788999999999999999998 9999999999999988888888888887765322     1222              


Q ss_pred             ----HHHHHHHHHHHHhcc--cCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCC
Q 024067          125 ----DVIFALLSKRLEEGY--YRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE  188 (273)
Q Consensus       125 ----~~~~~ll~~~l~~~~--~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~  188 (273)
                          .++..++.+.+....  .....-+|+|. |.-.+-  .+  ...+|.+|++.||.++..+|+..|.
T Consensus        80 ~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e~-pLL~E~--~~--~~~~D~vi~V~a~~e~ri~Rl~~R~  144 (180)
T PF01121_consen   80 KKLENIIHPLIREEIEKFIKRNKSEKVVVVEI-PLLFES--GL--EKLCDEVIVVYAPEEIRIKRLMERD  144 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE--TTTTTT--TG--GGGSSEEEEEE--HHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHhccCCCEEEEEc-chhhhh--hH--hhhhceEEEEECCHHHHHHHHHhhC
Confidence                122233333232210  11124556653 322111  11  1358999999999999999999885

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=99.33  E-value=9e-11  Score=101.31  Aligned_cols=174  Identities=13%  Similarity=0.115  Sum_probs=91.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHH--HHccCCChHHHH------HHHHHHCCC---CCCHHHHHHHHHH
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVR--QELSPRSALYKQ------IANAVNEGK---LVPEDVIFALLSK  133 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr--~~~~~~~~~g~~------i~~~l~~g~---~~~~~~~~~ll~~  133 (273)
                      .|+|.|..||||||+++.|++.++..++.......  ...+.++.+++.      ++.+..+..   .........++..
T Consensus         1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~   80 (219)
T cd02030           1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMYSS   80 (219)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCCCeeeccchhccccccccccccccccCCCcCHHHHhcCCcccCCcchHHHHHHHHH
Confidence            48899999999999999999999876553321110  011112222221      333333222   1122222122222


Q ss_pred             HHHhc------ccCCcceEEEeCCCCCH-H-H-------------HH---HH-----HhhCCCceEEEEccCHHHHHHHH
Q 024067          134 RLEEG------YYRGESGFILDGIPRTR-I-Q-------------AE---IL-----DQIVDVDLVINFKSIEDQLVKRN  184 (273)
Q Consensus       134 ~l~~~------~~~~~~g~IlDg~P~~~-~-q-------------a~---~l-----~~~~~~d~vI~L~~~~e~l~~Rl  184 (273)
                      +..+-      ....+..+|+|.++-+. . |             ..   .+     .....||++|+|+++++++.+|+
T Consensus        81 R~~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~~~~~~Ri  160 (219)
T cd02030          81 RLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEVQKRI  160 (219)
T ss_pred             HHHHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHH
Confidence            22110      01124678999875431 1 1             00   01     11146899999999999999999


Q ss_pred             hcCCcCCCcccccccCCCCCCCCCcHHHHHHHHH-HHHHhhHHHHHHHHhcCcEEEEeCC--CChhHHHHHHHH
Q 024067          185 LESEAFSPHKEFLRLGGARFSAADAASAWKEKFR-IYAEQGKSLEDYYSKQRKLLNFQVA--AAPGETWQGLLS  255 (273)
Q Consensus       185 ~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~-~y~~~~~~l~~~y~~~~~~~~id~~--~s~~ev~~~I~~  255 (273)
                      ..|+...              .......+.+++. .|.+..   ...|.+...++.+|++  .++++|..+|..
T Consensus       161 ~~R~~~~--------------e~~~~~~yl~~l~~~y~~~~---~~~~~~~~~~i~id~~~~~~~e~i~~~I~~  217 (219)
T cd02030         161 KKRGDPH--------------EMKVTSAYLQDIENAYKKTF---LPEISEHSEVLQYDWTEAGDTEKVVEDIEY  217 (219)
T ss_pred             HHcCCch--------------hhcccHHHHHHHHHHHHHHH---HHhhccCCCEEEEeCCChhhHHHHHHHHHc
Confidence            8876311              0011112222332 222221   1224444568899988  788888887753

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=99.32  E-value=8.5e-11  Score=97.93  Aligned_cols=162  Identities=15%  Similarity=0.137  Sum_probs=90.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCC---eechhHHHHHHccCCChH----HHHHHHHHHCCCCCC--HH-----HHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVP---HISMGSLVRQELSPRSAL----YKQIANAVNEGKLVP--ED-----VIFA  129 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~---~is~~dllr~~~~~~~~~----g~~i~~~l~~g~~~~--~~-----~~~~  129 (273)
                      ..|+|+|+|||||||+++.|+..++..   .+.....-+.....+..+    .+.+......+....  ..     -...
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   81 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIPA   81 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccChH
Confidence            478999999999999999999987642   111000011100011110    122333333332210  00     0011


Q ss_pred             HHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCc
Q 024067          130 LLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADA  209 (273)
Q Consensus       130 ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~  209 (273)
                      .+...+..     +..+|+||...   ....+........+|+|+++.+++.+|+..|..                  .+
T Consensus        82 ~i~~~~~~-----g~~vv~~g~~~---~~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~------------------~~  135 (179)
T TIGR02322        82 EIDQWLEA-----GDVVVVNGSRA---VLPEARQRYPNLLVVNITASPDVLAQRLAARGR------------------ES  135 (179)
T ss_pred             HHHHHHhc-----CCEEEEECCHH---HHHHHHHHCCCcEEEEEECCHHHHHHHHHHcCC------------------CC
Confidence            12233332     46789998632   122222223344799999999999999998752                  12


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHH-hcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067          210 ASAWKEKFRIYAEQGKSLEDYYS-KQRKLLNFQVAAAPGETWQGLLSALHL  259 (273)
Q Consensus       210 ~e~~~~rl~~y~~~~~~l~~~y~-~~~~~~~id~~~s~~ev~~~I~~~l~~  259 (273)
                      ++.+.+++..+..        |. ....++.++++++++++.++|...+..
T Consensus       136 ~~~~~~rl~~~~~--------~~~~~~~~~vi~~~~~~ee~~~~i~~~l~~  178 (179)
T TIGR02322       136 REEIEERLARSAR--------FAAAPADVTTIDNSGSLEVAGETLLRLLRK  178 (179)
T ss_pred             HHHHHHHHHHHhh--------cccccCCEEEEeCCCCHHHHHHHHHHHHcc
Confidence            3566777653321        21 223466688888999999999998853

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.32  E-value=2.4e-11  Score=116.32  Aligned_cols=108  Identities=16%  Similarity=0.235  Sum_probs=71.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhcccCC
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYRG  142 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~-~g~~~~~~~~~~ll~~~l~~~~~~~  142 (273)
                      |.|+|+|+|||||||+++.|++++|++++++|+++.+..      |..+.+++. .|+....+...+.+.+....     
T Consensus         1 m~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~------g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~-----   69 (488)
T PRK13951          1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERRE------GRSVRRIFEEDGEEYFRLKEKELLRELVER-----   69 (488)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHc------CCCHHHHHHHhhhHHHHHHHHHHHHHHhhc-----
Confidence            479999999999999999999999999999999887632      223333332 34433344444555443322     


Q ss_pred             cceEEE-eC--CCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcC
Q 024067          143 ESGFIL-DG--IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLES  187 (273)
Q Consensus       143 ~~g~Il-Dg--~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R  187 (273)
                       ...|+ .|  .+.+..+.+.|..    ..+|+|+++.+++.+|+..+
T Consensus        70 -~~~Vis~Gggvv~~~~~r~~l~~----~~vI~L~as~e~l~~Rl~~~  112 (488)
T PRK13951         70 -DNVVVATGGGVVIDPENRELLKK----EKTLFLYAPPEVLMERVTTE  112 (488)
T ss_pred             -CCEEEECCCccccChHHHHHHhc----CeEEEEECCHHHHHHHhccC
Confidence             12333 22  2223344444542    35999999999999999754

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=99.32  E-value=4.5e-11  Score=96.65  Aligned_cols=115  Identities=17%  Similarity=0.149  Sum_probs=72.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHhcccC
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPE---DVIFALLSKRLEEGYYR  141 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~---~~~~~ll~~~l~~~~~~  141 (273)
                      .|+|+|+|||||||+|+.|++.++..+++.|++.....          ...+..|...++   +.....+..........
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   70 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPAN----------IAKMAAGIPLNDEDRWPWLQALTDALLAKLAS   70 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHH----------HHHHHcCCCCCccchhhHHHHHHHHHHHHHHh
Confidence            37899999999999999999999999999887664311          011112222221   11111111111110001


Q ss_pred             CcceEEEeCCCCCHHHHHHHHhh--CCCceEEEEccCHHHHHHHHhcCCc
Q 024067          142 GESGFILDGIPRTRIQAEILDQI--VDVDLVINFKSIEDQLVKRNLESEA  189 (273)
Q Consensus       142 ~~~g~IlDg~P~~~~qa~~l~~~--~~~d~vI~L~~~~e~l~~Rl~~R~~  189 (273)
                      .+.++|+|.......+...+...  ..+..+|+|+++.+++.+|+..|..
T Consensus        71 ~~~~vVid~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~  120 (150)
T cd02021          71 AGEGVVVACSALKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAARKG  120 (150)
T ss_pred             CCCCEEEEeccccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhccc
Confidence            24678999755555666666555  2455799999999999999999863

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=99.31  E-value=1e-10  Score=97.36  Aligned_cols=159  Identities=14%  Similarity=0.135  Sum_probs=88.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCC--eechhHHHHHHccCCChHHHHHHHHHHCC--CCCCHHH-------HHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVP--HISMGSLVRQELSPRSALYKQIANAVNEG--KLVPEDV-------IFALL  131 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~--~is~~dllr~~~~~~~~~g~~i~~~l~~g--~~~~~~~-------~~~ll  131 (273)
                      +..|+|+|+|||||||+++.|++.++.+  +++.|++... +......++  ..+-.++  ...+.+.       ....+
T Consensus         2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~y~~~~~~~   78 (175)
T cd00227           2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEA-LPLKCQDAE--GGIEFDGDGGVSPGPEFRLLEGAWYEAV   78 (175)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHh-cChhhcccc--cccccCccCCcccchHHHHHHHHHHHHH
Confidence            5689999999999999999999998654  5577766543 221100000  0000011  1112211       12223


Q ss_pred             HHHHHhcccCCcceEEEeC-CCCCHHHHHHHHhhC-CCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCc
Q 024067          132 SKRLEEGYYRGESGFILDG-IPRTRIQAEILDQIV-DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADA  209 (273)
Q Consensus       132 ~~~l~~~~~~~~~g~IlDg-~P~~~~qa~~l~~~~-~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~  209 (273)
                      ...+.     .+..+|+|. ++......+.+.... .+-.+|+|+|+.+++.+|+..|...                  .
T Consensus        79 ~~~l~-----~G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~~~~l~~R~~~R~~~------------------~  135 (175)
T cd00227          79 AAMAR-----AGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCPGEVAEGRETARGDR------------------V  135 (175)
T ss_pred             HHHHh-----CCCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhcCCc------------------c
Confidence            33332     357799996 442222223333333 3457999999999999999988621                  0


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCC-ChhHHHHHHHHHH
Q 024067          210 ASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAA-APGETWQGLLSAL  257 (273)
Q Consensus       210 ~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~-s~~ev~~~I~~~l  257 (273)
                      ......+..          .++......+.||++. +++|+.++|.+.|
T Consensus       136 ~~~~~~~~~----------~~~~~~~~dl~iDts~~s~~e~a~~i~~~l  174 (175)
T cd00227         136 PGQARKQAR----------VVHAGVEYDLEVDTTHKTPIECARAIAARV  174 (175)
T ss_pred             chHHHHHHH----------HhcCCCcceEEEECCCCCHHHHHHHHHHhc
Confidence            111111111          1111122357889875 7999999998876

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=99.28  E-value=2.6e-10  Score=94.06  Aligned_cols=172  Identities=18%  Similarity=0.169  Sum_probs=112.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHH-----------H
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIF-----------A  129 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~-----------~  129 (273)
                      .++..|++.|..+|||||++..|.+.+. +...- ..+..-....++.|+.|..++.+-...+++++.           .
T Consensus         3 ~rg~liV~eGlDrsgKstQ~~~l~~~l~-~~~~~-~~l~~FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~~   80 (208)
T KOG3327|consen    3 IRGALIVLEGLDRSGKSTQCGKLVESLI-PGLDP-AELLRFPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHVS   80 (208)
T ss_pred             CCccEEeeeccccCCceeehhHHHHHHH-hccCh-HHhhhcchhcccccHHHHHHHHhccCCcHHHHHHHhccchhhHHH
Confidence            4789999999999999999999999883 22221 223233345678999999999988888887653           3


Q ss_pred             HHHHHHHhcccCCcceEEEeCCCCC---HHHHHHHHh---------hCCCceEEEEccCHHHHHHHHhcCCcCCCccccc
Q 024067          130 LLSKRLEEGYYRGESGFILDGIPRT---RIQAEILDQ---------IVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFL  197 (273)
Q Consensus       130 ll~~~l~~~~~~~~~g~IlDg~P~~---~~qa~~l~~---------~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y  197 (273)
                      ++.+.+..     +..+|+|.|--+   ..-|+.|+.         ...||+|+||+++++.+ .|..+.+...      
T Consensus        81 ~i~e~l~k-----g~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~gL~KPDlvlfL~v~p~~~-a~rggfG~Er------  148 (208)
T KOG3327|consen   81 LIKEKLAK-----GTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDVGLPKPDLVLFLDVSPEDA-ARRGGFGEER------  148 (208)
T ss_pred             HHHHHHhc-----CCeEEEecceecchhhhhhcCCCcchhhCCccCCCCCCeEEEEeCCHHHH-HHhcCcchhH------
Confidence            44444543     467899976433   122333321         24799999999999995 4444444211      


Q ss_pred             ccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhc-CcEEEEeCCCChhHHHHHHHHHHHhcCC
Q 024067          198 RLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQ-RKLLNFQVAAAPGETWQGLLSALHLQHM  262 (273)
Q Consensus       198 ~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~-~~~~~id~~~s~~ev~~~I~~~l~~~~~  262 (273)
                               .+ ...++++...+.+.   +.   ++. ..++.+|++.+.++|.+.|...++.-..
T Consensus       149 ---------ye-~v~fqekv~~~~q~---l~---r~e~~~~~~vDAs~sve~V~~~V~~i~e~~~~  198 (208)
T KOG3327|consen  149 ---------YE-TVAFQEKVLVFFQK---LL---RKEDLNWHVVDASKSVEKVHQQVRSLVENVLS  198 (208)
T ss_pred             ---------HH-HHHHHHHHHHHHHH---HH---hccCCCeEEEecCccHHHHHHHHHHHHHHhcc
Confidence                     11 12333443322211   11   222 3699999999999999999888775543

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=99.26  E-value=1.2e-10  Score=96.01  Aligned_cols=157  Identities=11%  Similarity=0.078  Sum_probs=93.2

Q ss_pred             EcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHhcccCCcce
Q 024067           69 IGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPED---VIFALLSKRLEEGYYRGESG  145 (273)
Q Consensus        69 ~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~---~~~~ll~~~l~~~~~~~~~g  145 (273)
                      +|+|||||||+++.|++.+|..+++.|.+.....         +.. ...|....++   .....+..............
T Consensus         1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~---------~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRN---------IEK-MASGEPLNDDDRKPWLQALNDAAFAMQRTNKVS   70 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhh---------hcc-ccCCCCCChhhHHHHHHHHHHHHHHHHHcCCce
Confidence            5999999999999999999999999865421110         000 0112211111   11111111111000012344


Q ss_pred             EEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHhhH
Q 024067          146 FILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGK  225 (273)
Q Consensus       146 ~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~~~~  225 (273)
                      +|+ .......+.+.+.....+..+|+|+|+++++.+|+..|..+.                .+.+.+..++..++    
T Consensus        71 viv-~s~~~~~~r~~~~~~~~~~~~v~l~a~~~~l~~Rl~~R~~~~----------------a~~~vl~~Q~~~~e----  129 (163)
T PRK11545         71 LIV-CSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHF----------------FKTQMLVTQFETLQ----  129 (163)
T ss_pred             EEE-EecchHHHHHHHHccCCCEEEEEEECCHHHHHHHHHhccCCC----------------CCHHHHHHHHHHcC----
Confidence            555 433344445555554556689999999999999999997321                14556666655442    


Q ss_pred             HHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067          226 SLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL  259 (273)
Q Consensus       226 ~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~  259 (273)
                      |..   .....++.||++.+++++..++...|..
T Consensus       130 p~~---~~e~~~~~id~~~~~~~~~~~~~~~~~~  160 (163)
T PRK11545        130 EPG---ADETDVLVVDIDQPLEGVVASTIEVIKK  160 (163)
T ss_pred             CCC---CCCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence            110   0112478999999999999999998853

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=99.22  E-value=6e-11  Score=95.07  Aligned_cols=103  Identities=22%  Similarity=0.274  Sum_probs=64.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCcc
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGES  144 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~~  144 (273)
                      +|+|.|+|||||||+|+.|++++|+++++.+.+..+.      ..........      ...+...+.+.+...  ....
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~------~~~~~~~~~~------~~~i~~~l~~~~~~~--~~~~   66 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEE------VGKLASEVAA------IPEVRKALDERQREL--AKKP   66 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHH------HHHHHHHhcc------cHhHHHHHHHHHHHH--hhCC
Confidence            4789999999999999999999999999997443221      1111111000      011122222222221  1235


Q ss_pred             eEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcC
Q 024067          145 GFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLES  187 (273)
Q Consensus       145 g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R  187 (273)
                      +||+||......    +  ....+++|+|++|++...+|+..|
T Consensus        67 ~~Vidg~~~~~~----~--~~~~~~~i~l~~~~~~r~~R~~~r  103 (147)
T cd02020          67 GIVLEGRDIGTV----V--FPDADLKIFLTASPEVRAKRRAKQ  103 (147)
T ss_pred             CEEEEeeeeeeE----E--cCCCCEEEEEECCHHHHHHHHHHH
Confidence            799998642211    0  124689999999999999999884

>PRK00300 gmk guanylate kinase; Provisional

Probab=99.22  E-value=2.2e-10  Score=97.39  Aligned_cols=168  Identities=12%  Similarity=0.113  Sum_probs=98.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccC---CCh----HHHHHHHHHHCCCCCCH-----HH---
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSP---RSA----LYKQIANAVNEGKLVPE-----DV---  126 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~---~~~----~g~~i~~~l~~g~~~~~-----~~---  126 (273)
                      ++..|+|+||+||||||+++.|+..++..++......++-..+   +.+    ..+.+...+..|..+..     ..   
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~   83 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYGT   83 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCccccC
Confidence            5778999999999999999999998863333322222210000   000    11334444444433211     00   


Q ss_pred             HHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHH-HhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCC
Q 024067          127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEIL-DQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFS  205 (273)
Q Consensus       127 ~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l-~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~  205 (273)
                      ....+...+..     +..+|+|..+...   ..+ +....+-.|+++.++.+++.+|+..|..                
T Consensus        84 ~~~~i~~~l~~-----g~~vi~dl~~~g~---~~l~~~~~~~~~I~i~~~s~~~l~~Rl~~R~~----------------  139 (205)
T PRK00300         84 PRSPVEEALAA-----GKDVLLEIDWQGA---RQVKKKMPDAVSIFILPPSLEELERRLRGRGT----------------  139 (205)
T ss_pred             cHHHHHHHHHc-----CCeEEEeCCHHHH---HHHHHhCCCcEEEEEECcCHHHHHHHHHhcCC----------------
Confidence            12233344443     3567888755332   223 2223333355556788999999998863                


Q ss_pred             CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcCC
Q 024067          206 AADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHM  262 (273)
Q Consensus       206 ~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~~  262 (273)
                        ++++.+++|+..+....    +++...+.++ +  +.++++++.+|...+.....
T Consensus       140 --~~~~~i~~rl~~~~~~~----~~~~~~d~vi-~--n~~~e~~~~~l~~il~~~~~  187 (205)
T PRK00300        140 --DSEEVIARRLAKAREEI----AHASEYDYVI-V--NDDLDTALEELKAIIRAERL  187 (205)
T ss_pred             --CCHHHHHHHHHHHHHHH----HhHHhCCEEE-E--CCCHHHHHHHHHHHHHHHHh
Confidence              34678889998887543    3444444333 3  34899999999999988643

>PRK06547 hypothetical protein; Provisional

Probab=99.21  E-value=8.5e-11  Score=97.77  Aligned_cols=124  Identities=14%  Similarity=0.139  Sum_probs=72.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHh-c
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIAN-AVNEGKLVPEDVIFALLSKRLEE-G  138 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~-~l~~g~~~~~~~~~~ll~~~l~~-~  138 (273)
                      .+++.|+|.|++||||||+++.|++.++++++++|++.... .......+.+.+ ++..|+...-.  .......... .
T Consensus        13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~-~~~~~~~~~l~~~~l~~g~~~~~~--yd~~~~~~~~~~   89 (172)
T PRK06547         13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGW-HGLAAASEHVAEAVLDEGRPGRWR--WDWANNRPGDWV   89 (172)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceeccc-ccCChHHHHHHHHHHhCCCCceec--CCCCCCCCCCcE
Confidence            46788999999999999999999999999999999887421 111111222333 23334321100  0000000000 0


Q ss_pred             ccCCcceEEEeCCCCCHHH-HHHHHhhCCCceEEEEccCHHHHHHHHhcCC
Q 024067          139 YYRGESGFILDGIPRTRIQ-AEILDQIVDVDLVINFKSIEDQLVKRNLESE  188 (273)
Q Consensus       139 ~~~~~~g~IlDg~P~~~~q-a~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~  188 (273)
                      .......+|++|...-..+ ...++. ...-++|+|++|.++..+|+..|.
T Consensus        90 ~l~~~~vVIvEG~~al~~~~r~~~d~-~g~v~~I~ld~~~~vr~~R~~~Rd  139 (172)
T PRK06547         90 SVEPGRRLIIEGVGSLTAANVALASL-LGEVLTVWLDGPEALRKERALARD  139 (172)
T ss_pred             EeCCCCeEEEEehhhccHHHHHHhcc-CCCEEEEEEECCHHHHHHHHHhcC
Confidence            0112356889986332221 222221 223389999999999999999986

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=99.20  E-value=6.8e-10  Score=92.11  Aligned_cols=166  Identities=14%  Similarity=0.108  Sum_probs=106.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCCh--------HHHHHHHHHHCCCCCCHHH-------
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSA--------LYKQIANAVNEGKLVPEDV-------  126 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~--------~g~~i~~~l~~g~~~~~~~-------  126 (273)
                      +|..|+|.||+|+||||+.+.|-+..+ .++|+..--|+ ..++..        ..+++.+++.+|+.+....       
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~-l~~SVS~TTR~-pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYG   80 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDDK-LRFSVSATTRK-PRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYG   80 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhcC-eEEEEEeccCC-CCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCccc
Confidence            689999999999999999999999984 44555433432 222221        1256777888887665422       


Q ss_pred             -HHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccC-HHHHHHHHhcCCcCCCcccccccCCCCC
Q 024067          127 -IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSI-EDQLVKRNLESEAFSPHKEFLRLGGARF  204 (273)
Q Consensus       127 -~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~-~e~l~~Rl~~R~~~~~~~~~y~~~~~~~  204 (273)
                       -..-+.+.+..     +..+|+|---..   +..+....+....||+.+| .+++.+|+.+|+                
T Consensus        81 T~~~~ve~~~~~-----G~~vildId~qG---a~qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rg----------------  136 (191)
T COG0194          81 TSREPVEQALAE-----GKDVILDIDVQG---ALQVKKKMPNAVSIFILPPSLEELERRLKGRG----------------  136 (191)
T ss_pred             CcHHHHHHHHhc-----CCeEEEEEehHH---HHHHHHhCCCeEEEEEcCCCHHHHHHHHHccC----------------
Confidence             23344454544     467888743222   2222222233345565554 488999999887                


Q ss_pred             CCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcCC
Q 024067          205 SAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHM  262 (273)
Q Consensus       205 ~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~~  262 (273)
                        .|+++.+++|+...+..+..    +.+.+. +.+  +.+.+..+++|...+...+.
T Consensus       137 --tds~e~I~~Rl~~a~~Ei~~----~~~fdy-viv--Ndd~e~a~~~l~~ii~aer~  185 (191)
T COG0194         137 --TDSEEVIARRLENAKKEISH----ADEFDY-VIV--NDDLEKALEELKSIILAERL  185 (191)
T ss_pred             --CCCHHHHHHHHHHHHHHHHH----HHhCCE-EEE--CccHHHHHHHHHHHHHHHHH
Confidence              45688999999988766543    333332 333  47788899998888876643

>PRK05541 adenylylsulfate kinase; Provisional

Probab=99.19  E-value=4.7e-10  Score=93.29  Aligned_cols=107  Identities=19%  Similarity=0.107  Sum_probs=63.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC-----CCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHH----HHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV----IFALL  131 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g-----~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~----~~~ll  131 (273)
                      .+|..|+|+|+|||||||+++.|+++++     ..+++.+ -+++.....             |...+...    ....+
T Consensus         5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d-~~r~~~~~~-------------~~~~~~~~~~~~~~~~l   70 (176)
T PRK05541          5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGD-ELREILGHY-------------GYDKQSRIEMALKRAKL   70 (176)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecH-HHHhhcCCC-------------CCCHHHHHHHHHHHHHH
Confidence            3678999999999999999999999985     5666654 344432211             00001111    11122


Q ss_pred             HHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHh
Q 024067          132 SKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNL  185 (273)
Q Consensus       132 ~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~  185 (273)
                      ...+..    .+..+|+|+......-.........+.++|+|+++.+++.+|+.
T Consensus        71 ~~~l~~----~g~~VI~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~  120 (176)
T PRK05541         71 AKFLAD----QGMIVIVTTISMFDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQ  120 (176)
T ss_pred             HHHHHh----CCCEEEEEeCCcHHHHHHHHHhhcCCeEEEEEeCCHHHHHHhch
Confidence            222221    23568888754221111122223455689999999999999975

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=99.17  E-value=9.2e-12  Score=96.86  Aligned_cols=109  Identities=25%  Similarity=0.328  Sum_probs=60.7

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcc-cCCc
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY-YRGE  143 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~-~~~~  143 (273)
                      +|+|.|+|||||||+|+.|++++|++++++|++++.....  +        ...+...........+...+.... ....
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~--~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   70 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWI--E--------RDDDEREYIDADIDLLDDILEQLQNKPDN   70 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHC--H--------GCTTCCHHHHHHHHHHHHHHHHHHETTT-
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEecccc--c--------cCcchhhHHHHHHHHHHHHHHhhhccCCC
Confidence            5889999999999999999999999999999954321110  0        001111001112223333332210 1235


Q ss_pred             ceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcC
Q 024067          144 SGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLES  187 (273)
Q Consensus       144 ~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R  187 (273)
                      ..||+||.-. ... + + .....+.+|++.++.+.+.+|+..|
T Consensus        71 ~~~ii~g~~~-~~~-~-~-~~~~~~~~i~l~~~~~~~~~~~~~R  110 (121)
T PF13207_consen   71 DNWIIDGSYE-SEM-E-I-RLPEFDHVIYLDAPDEECRERRLKR  110 (121)
T ss_dssp             -EEEEECCSC-HCC-H-S-CCHHGGCEEEEEEEEHHHHHHHHHH
T ss_pred             CeEEEeCCCc-cch-h-h-hhhcCCEEEEEECCCHHHHHHHHHH
Confidence            7899999321 110 0 1 1123457899998887555555444

...

>PRK14737 gmk guanylate kinase; Provisional

Probab=99.16  E-value=1.3e-09  Score=91.81  Aligned_cols=165  Identities=10%  Similarity=0.062  Sum_probs=99.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCCh--------HHHHHHHHHHCCCCCCHH-------
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSA--------LYKQIANAVNEGKLVPED-------  125 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~--------~g~~i~~~l~~g~~~~~~-------  125 (273)
                      .+++.|+|+||+||||+|+++.|.+++.-.+.+....-|. ..++..        .-+++...+.+|..+...       
T Consensus         2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~-~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~Y   80 (186)
T PRK14737          2 ASPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRA-PRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYY   80 (186)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCC-CCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeee
Confidence            3688999999999999999999999873223333222221 111111        124556666666554321       


Q ss_pred             -HHHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCc--eEEEEccC-HHHHHHHHhcCCcCCCcccccccCC
Q 024067          126 -VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVD--LVINFKSI-EDQLVKRNLESEAFSPHKEFLRLGG  201 (273)
Q Consensus       126 -~~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d--~vI~L~~~-~e~l~~Rl~~R~~~~~~~~~y~~~~  201 (273)
                       +-.+-+...+..     ++.+|+|.-+....+...   . .|+  ++|++.+| .+++.+|+..|..            
T Consensus        81 Gt~~~~i~~~~~~-----g~~~i~d~~~~g~~~l~~---~-~~~~~~~Ifi~pps~e~l~~RL~~R~~------------  139 (186)
T PRK14737         81 GTPKAFIEDAFKE-----GRSAIMDIDVQGAKIIKE---K-FPERIVTIFIEPPSEEEWEERLIHRGT------------  139 (186)
T ss_pred             cCcHHHHHHHHHc-----CCeEEEEcCHHHHHHHHH---h-CCCCeEEEEEECCCHHHHHHHHHhcCC------------
Confidence             122334444443     477899976655555432   2 243  58888875 6889999988863            


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067          202 ARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ  260 (273)
Q Consensus       202 ~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~  260 (273)
                            ++++.+++|+......    .+ +...-. +.|+.+ +.++...+|...|..+
T Consensus       140 ------~s~e~i~~Rl~~~~~e----~~-~~~~~D-~vI~N~-dle~a~~ql~~ii~~~  185 (186)
T PRK14737        140 ------DSEESIEKRIENGIIE----LD-EANEFD-YKIIND-DLEDAIADLEAIICGK  185 (186)
T ss_pred             ------CCHHHHHHHHHHHHHH----Hh-hhccCC-EEEECc-CHHHHHHHHHHHHhcC
Confidence                  2456788888764322    12 222112 334544 8999999999888653

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=99.16  E-value=9.6e-10  Score=105.35  Aligned_cols=40  Identities=20%  Similarity=0.253  Sum_probs=37.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE  101 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~  101 (273)
                      ++++|.|.||+||||||+++.|++++|+.+++.|+++|..
T Consensus       283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~  322 (512)
T PRK13477        283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAV  322 (512)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHH
Confidence            5788999999999999999999999999999999999863

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=99.16  E-value=6.1e-10  Score=93.86  Aligned_cols=118  Identities=18%  Similarity=0.200  Sum_probs=63.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh---cc--
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEE---GY--  139 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~---~~--  139 (273)
                      .|+|.|++||||||+++.|++.+++.++.-..  . ......++   ++.+..+-..........++..+.++   ..  
T Consensus         1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~~Ep~--~-~~~~~~~~---l~~~~~~~~~~~~~~q~~~~~~r~~~~~~~~~~   74 (193)
T cd01673           1 VIVVEGNIGAGKSTLAKELAEHLGYEVVPEPV--E-PDVEGNPF---LEKFYEDPKRWAFPFQLYFLLSRLKQYKDALEH   74 (193)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCccccccc--c-ccCCCCCC---HHHHHhCHHhccHHHHHHHHHHHHHHHHHHHhh
Confidence            48899999999999999999998875442210  0 00001111   22222211001111111111111111   00  


Q ss_pred             cCCcceEEEeCCCCCHH--------H-------HH----HHHh----hCCCceEEEEccCHHHHHHHHhcCC
Q 024067          140 YRGESGFILDGIPRTRI--------Q-------AE----ILDQ----IVDVDLVINFKSIEDQLVKRNLESE  188 (273)
Q Consensus       140 ~~~~~g~IlDg~P~~~~--------q-------a~----~l~~----~~~~d~vI~L~~~~e~l~~Rl~~R~  188 (273)
                      ...+..+|+|.+|.+..        +       .+    .++.    ...||++|+|+++++++++|+..|.
T Consensus        75 ~~~~~~vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~~Ri~~R~  146 (193)
T cd01673          75 LSTGQGVILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKRG  146 (193)
T ss_pred             cccCCceEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence            12356789998775421        1       00    1111    1369999999999999999998876

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=99.14  E-value=1e-09  Score=93.83  Aligned_cols=123  Identities=15%  Similarity=0.161  Sum_probs=68.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC---CCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE---VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEE  137 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g---~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~  137 (273)
                      .++.+|.|.|++||||||+++.|++.++   +.+++.|+.+......  +..+............+.+.+.+.+......
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~   81 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHL--SFEERVKTNYDHPDAFDHDLLIEHLKALKAG   81 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccC--CHHHhcccCccCcccccHHHHHHHHHHHHcC
Confidence            4788999999999999999999999983   4567887765421100  0000000000000111122222222221110


Q ss_pred             c-------------------ccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCc
Q 024067          138 G-------------------YYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA  189 (273)
Q Consensus       138 ~-------------------~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~  189 (273)
                      .                   ......-+|+||...-.. . .+.  ..+|++|++++|.++.++|...|..
T Consensus        82 ~~v~~p~~d~~~~~~~~~~~~~~~~~~vivEg~~l~~~-~-~~~--~~~d~~I~v~~~~~~~~~R~~~Rd~  148 (209)
T PRK05480         82 KAIEIPVYDYTEHTRSKETIRVEPKDVIILEGILLLED-E-RLR--DLMDIKIFVDTPLDIRLIRRLKRDV  148 (209)
T ss_pred             CccccCcccccccccCCCeEEeCCCCEEEEEeehhcCc-h-hHh--hhhceeEEEeCChhHHHHHHHhhcc
Confidence            0                   001123577888643211 0 111  2468999999999999999988864

>TIGR03263 guanyl_kin guanylate kinase

Probab=99.12  E-value=7.4e-10  Score=92.18  Aligned_cols=163  Identities=12%  Similarity=0.093  Sum_probs=94.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCC---Ch----HHHHHHHHHHCCCCCCHH--------HH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPR---SA----LYKQIANAVNEGKLVPED--------VI  127 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~---~~----~g~~i~~~l~~g~~~~~~--------~~  127 (273)
                      +..|+|+||+||||||+++.|++.++..++......++...+.   ..    ..+.+...+..+..+...        +.
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~   80 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTP   80 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCc
Confidence            4679999999999999999999987655555433333221110   00    012344444444433211        11


Q ss_pred             HHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHH-HhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCC
Q 024067          128 FALLSKRLEEGYYRGESGFILDGIPRTRIQAEIL-DQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSA  206 (273)
Q Consensus       128 ~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l-~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~  206 (273)
                      ...+.+.+.+     +..+|+|.-+.   ....+ +.+..+..++++.++++.+.+|+..|..                 
T Consensus        81 ~~~i~~~~~~-----g~~vi~d~~~~---~~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~~-----------------  135 (180)
T TIGR03263        81 KSPVEEALAA-----GKDVLLEIDVQ---GARQVKKKFPDAVSIFILPPSLEELERRLRKRGT-----------------  135 (180)
T ss_pred             HHHHHHHHHC-----CCeEEEECCHH---HHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCC-----------------
Confidence            2334444443     36688886432   22323 3333444566667778999999988763                 


Q ss_pred             CCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHH
Q 024067          207 ADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALH  258 (273)
Q Consensus       207 ~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~  258 (273)
                       ++++.+++|+..+.....    +-...+ .+ |.. .+.+++.++|...+.
T Consensus       136 -~~~~~i~~rl~~~~~~~~----~~~~~d-~~-i~n-~~~~~~~~~l~~~~~  179 (180)
T TIGR03263       136 -DSEEVIERRLAKAKKEIA----HADEFD-YV-IVN-DDLEKAVEELKSIIL  179 (180)
T ss_pred             -CCHHHHHHHHHHHHHHHh----ccccCc-EE-EEC-CCHHHHHHHHHHHHh
Confidence             345678888877654322    111122 33 343 478999999988764

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK12338 hypothetical protein; Provisional

Probab=99.12  E-value=5.1e-09  Score=94.64  Aligned_cols=179  Identities=13%  Similarity=0.153  Sum_probs=96.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCC--Ch----H----HHHHHHHHHCCCC-CC-H-----
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPR--SA----L----YKQIANAVNEGKL-VP-E-----  124 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~--~~----~----g~~i~~~l~~g~~-~~-~-----  124 (273)
                      +|..|+|.|+|||||||+|+.||+++|+.++..+|.+++.+.+-  .+    +    ++... .+..... .+ .     
T Consensus         3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~-~l~~~~~~~~~~~~i~~   81 (319)
T PRK12338          3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRGIIGKEYAPALHKSSYNAYT-ALRDKENFKNNEELICA   81 (319)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcCCCCcccCchhhcccHHHHh-hcCCcccccchHHHHHH
Confidence            46789999999999999999999999999997778888865531  11    0    11110 1111111 11 1     


Q ss_pred             ------HHHHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHH--hhCCCceEEEEccCHHHHHHHHhcCCcCCCcccc
Q 024067          125 ------DVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILD--QIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEF  196 (273)
Q Consensus       125 ------~~~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~--~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~  196 (273)
                            +.+...+...+... ...+..+|++|.--...-.....  ....+ .++.|..+++...+|+..|......+  
T Consensus        82 gf~~q~~~V~~~i~~vi~r~-~~~g~svIiEGvhl~P~~i~~~~~~~~~~v-~~~vl~~dee~h~~Rf~~R~~~~~r~--  157 (319)
T PRK12338         82 GFEEHASFVIPAIEKVIERA-VTDSDDIVIEGVHLVPGLIDIEQFEENASI-HFFILSADEEVHKERFVKRAMEIKRG--  157 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-hcCCCeEEEEeccccHHHHhhhhhcccCce-EEEEEECCHHHHHHHHHHhhhccCCc--
Confidence                  12222222222221 13457899999754433222111  11222 35555588899999999887432100  


Q ss_pred             cccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcC
Q 024067          197 LRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQH  261 (273)
Q Consensus       197 y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~  261 (273)
                                    ....+.+...+...+-+.+.-.+. .+..++ +.+.++..+.|.+.+....
T Consensus       158 --------------~~~l~~f~~Ir~Iq~~l~~~A~e~-~VpvI~-N~did~Tv~~ile~I~e~s  206 (319)
T PRK12338        158 --------------GKQLEYFRENRIIHDHLVEQAREH-NVPVIK-NDDIDCTVKKMLSYIREVC  206 (319)
T ss_pred             --------------hhhhhChHHHHHHHHHHHHhHhhC-CCceeC-CCcHHHHHHHHHHHHHhhe
Confidence                          011111222221111122221222 344455 6889999999998887653

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.11  E-value=3.3e-09  Score=89.91  Aligned_cols=38  Identities=21%  Similarity=0.266  Sum_probs=36.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE  101 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~  101 (273)
                      +.|.|-||.||||||+|+.||++||++|+++|-++|..
T Consensus         5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~   42 (222)
T COG0283           5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAV   42 (222)
T ss_pred             eEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHH
Confidence            78999999999999999999999999999999999853

>PRK00889 adenylylsulfate kinase; Provisional

Probab=99.10  E-value=1.8e-09  Score=89.67  Aligned_cols=108  Identities=19%  Similarity=0.177  Sum_probs=62.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC-----CCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHH--HHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIF--ALLSKR  134 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g-----~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~--~ll~~~  134 (273)
                      ++..|+|+|+|||||||+++.|++.+.     +.+++.|.+ ++.+..+-.+...          ..+....  ..+...
T Consensus         3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~-~~~~~~~~~~~~~----------~r~~~~~~~~~~a~~   71 (175)
T PRK00889          3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV-RTNLSKGLGFSKE----------DRDTNIRRIGFVANL   71 (175)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH-HHHHhcCCCCChh----------hHHHHHHHHHHHHHH
Confidence            567899999999999999999999882     567877544 3332211000000          0000111  112222


Q ss_pred             HHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHH
Q 024067          135 LEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRN  184 (273)
Q Consensus       135 l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl  184 (273)
                      +..    .+..+|+|+.-......+.+......-.+|+|+|+.+++.+|.
T Consensus        72 ~~~----~g~~vi~~~~~~~~~~~~~l~~~~~~~~~v~l~~~~e~~~~R~  117 (175)
T PRK00889         72 LTR----HGVIVLVSAISPYRETREEVRANIGNFLEVFVDAPLEVCEQRD  117 (175)
T ss_pred             HHh----CCCEEEEecCCCCHHHHHHHHhhcCCeEEEEEcCCHHHHHHhC
Confidence            221    2345677765223333444444444456999999999999994

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=99.06  E-value=1.8e-08  Score=82.14  Aligned_cols=173  Identities=14%  Similarity=0.165  Sum_probs=95.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh-CCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~-g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~  141 (273)
                      ++.++++|.||+||||+++.+.+.+ +.++++.++++-+...... +- +.++.+.   -+|.+....+...+..... .
T Consensus         4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~g-lv-e~rD~~R---klp~e~Q~~lq~~Aa~rI~-~   77 (189)
T COG2019           4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKG-LV-EHRDEMR---KLPLENQRELQAEAAKRIA-E   77 (189)
T ss_pred             ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhC-Cc-ccHHHHh---cCCHHHHHHHHHHHHHHHH-H
Confidence            5789999999999999999999999 8888999998865332110 00 1112222   2455554444443333221 0


Q ss_pred             CcceEEEeCCCCCHHHH-------HHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHH
Q 024067          142 GESGFILDGIPRTRIQA-------EILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWK  214 (273)
Q Consensus       142 ~~~g~IlDg~P~~~~qa-------~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~  214 (273)
                      ....+|+|+.-.-..-+       ...-....||.+|.|..+++.++.|........             +..++.+.++
T Consensus        78 ~~~~iivDtH~~IkTP~GylpgLP~~Vl~~l~pd~ivllEaDp~~Il~RR~~D~~r~-------------Rd~es~e~i~  144 (189)
T COG2019          78 MALEIIVDTHATIKTPAGYLPGLPSWVLEELNPDVIVLLEADPEEILERRLRDSRRD-------------RDVESVEEIR  144 (189)
T ss_pred             hhhceEEeccceecCCCccCCCCcHHHHHhcCCCEEEEEeCCHHHHHHHHhcccccc-------------cccccHHHHH
Confidence            11227888431100000       111123689999999999999888776542110             2233444554


Q ss_pred             HHHHHHHHhhHHHHHHHHh-cC-cEEEEe-CCCChhHHHHHHHHHHH
Q 024067          215 EKFRIYAEQGKSLEDYYSK-QR-KLLNFQ-VAAAPGETWQGLLSALH  258 (273)
Q Consensus       215 ~rl~~y~~~~~~l~~~y~~-~~-~~~~id-~~~s~~ev~~~I~~~l~  258 (273)
                      +..+.-+-..-    -|.- .+ .+..+. -++.+++-..+|...|.
T Consensus       145 eHqe~nR~aA~----a~A~~~gatVkIV~n~~~~~e~Aa~eiv~~l~  187 (189)
T COG2019         145 EHQEMNRAAAM----AYAILLGATVKIVENHEGDPEEAAEEIVELLD  187 (189)
T ss_pred             HHHHHHHHHHH----HHHHHhCCeEEEEeCCCCCHHHHHHHHHHHHh
Confidence            43321111100    1111 12 234443 35689999999988775

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=99.06  E-value=2.6e-09  Score=104.19  Aligned_cols=162  Identities=14%  Similarity=0.158  Sum_probs=90.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCC------CeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHH--HH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV------PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFAL--LS  132 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~------~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~l--l~  132 (273)
                      .++..|+|+|+|||||||+|+.|+++++.      .+++.| .+++.+.++..+...-++          .....+  +.
T Consensus       390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D-~vr~~l~ge~~f~~~er~----------~~~~~l~~~a  458 (568)
T PRK05537        390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGD-VVRKHLSSELGFSKEDRD----------LNILRIGFVA  458 (568)
T ss_pred             CCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCc-HHHHhccCCCCCCHHHHH----------HHHHHHHHHH
Confidence            45778999999999999999999999985      788775 556555432111110000          011111  11


Q ss_pred             HHHHhcccCCcceEEEeC-CCCCHHHH---HHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCC
Q 024067          133 KRLEEGYYRGESGFILDG-IPRTRIQA---EILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAAD  208 (273)
Q Consensus       133 ~~l~~~~~~~~~g~IlDg-~P~~~~qa---~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d  208 (273)
                      ..+.    ..+.++|+|. +|......   +.+... ....+|+|+++.+++.+|.... .       |.        ..
T Consensus       459 ~~v~----~~Gg~vI~~~~~p~~~~R~~nr~llk~~-g~fivV~L~~p~e~l~~R~rr~-L-------l~--------~~  517 (568)
T PRK05537        459 SEIT----KNGGIAICAPIAPYRATRREVREMIEAY-GGFIEVHVATPLEVCEQRDRKG-L-------YA--------KA  517 (568)
T ss_pred             HHHH----hCCCEEEEEeCCchHHHHHHHHHHHhhc-CCEEEEEEcCCHHHHHHhcccc-c-------cc--------cc
Confidence            1111    2357788885 45442222   222222 2235899999999999996321 1       00        00


Q ss_pred             cHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHHHHhcC
Q 024067          209 AASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVA-AAPGETWQGLLSALHLQH  261 (273)
Q Consensus       209 ~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~-~s~~ev~~~I~~~l~~~~  261 (273)
                      ..+.    +..+.   .....||....--+.||++ .+++++.++|...|..+.
T Consensus       518 ~~~~----i~~l~---~~R~~yy~p~~Adl~IDt~~~s~~eiv~~Il~~L~~~g  564 (568)
T PRK05537        518 REGK----IKGFT---GISDPYEPPANPELVIDTTNVTPDECAHKILLYLEEKG  564 (568)
T ss_pred             hhch----hhccc---cccccccCCCCCcEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            0111    11111   1123356411112567776 589999999999987653

>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]

Probab=99.02  E-value=1.8e-08  Score=88.12  Aligned_cols=179  Identities=16%  Similarity=0.206  Sum_probs=97.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCee---chhHHHHHHccCC-ChHH---------HHHHHHHH--CCCCCCHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHI---SMGSLVRQELSPR-SALY---------KQIANAVN--EGKLVPED  125 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~i---s~~dllr~~~~~~-~~~g---------~~i~~~l~--~g~~~~~~  125 (273)
                      .+.+.|++.|+.|||||++|+.||+++|+.|+   .+|+++-...-.. ..+.         -.|+..-.  .|. ..-.
T Consensus        69 enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~d-lsa~  147 (393)
T KOG3877|consen   69 ENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGD-LSAA  147 (393)
T ss_pred             ccceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCcc-HHHH
Confidence            35789999999999999999999999998765   4555543211100 0000         00111110  010 0111


Q ss_pred             HHHHH----H---HHHHHhcccCCcceEEEeCCCCC-HHHHHHHH----------------------hhCCCceEEEEcc
Q 024067          126 VIFAL----L---SKRLEEGYYRGESGFILDGIPRT-RIQAEILD----------------------QIVDVDLVINFKS  175 (273)
Q Consensus       126 ~~~~l----l---~~~l~~~~~~~~~g~IlDg~P~~-~~qa~~l~----------------------~~~~~d~vI~L~~  175 (273)
                      ....+    +   .++|+.. ...++|+||...|-+ .-.++.|.                      +.+.|.+||+|++
T Consensus       148 ~Q~r~y~~R~~QY~dAL~Hi-L~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~  226 (393)
T KOG3877|consen  148 MQDRIYNCRFDQYLDALAHI-LNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDT  226 (393)
T ss_pred             HHHHHHHhHHHHHHHHHHHH-HhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcC
Confidence            11111    1   1222221 134799999987765 22333331                      1247999999999


Q ss_pred             CHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCC--CChhHHHHHH
Q 024067          176 IEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVA--AAPGETWQGL  253 (273)
Q Consensus       176 ~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~--~s~~ev~~~I  253 (273)
                      |...+.+++..|+....          . + .-++.-++.-=+.|++.   .+.-|.++..++.-|..  ++.+.|+++|
T Consensus       227 Pv~~v~~~Ik~rg~~~E----------i-k-~~s~aYL~diE~~YK~~---fL~e~s~h~eiL~Ydwt~~gdt~~VVEDI  291 (393)
T KOG3877|consen  227 PVNKVLENIKRRGNTDE----------I-K-TVSEAYLKDIEESYKDS---FLREYSNHSEILAYDWTKPGDTDAVVEDI  291 (393)
T ss_pred             CcHHHHHHHHhcCCCcc----------e-e-ehhHHHHHHHHHHHHHH---HHHHHhhhhheeeeecccCCCchhHHHhh
Confidence            99999999998875220          0 0 00111222222344433   22335555556666654  4677888887


Q ss_pred             HHH
Q 024067          254 LSA  256 (273)
Q Consensus       254 ~~~  256 (273)
                      ...
T Consensus       292 Erl  294 (393)
T KOG3877|consen  292 ERL  294 (393)
T ss_pred             hhh
Confidence            654

>PRK00023 cmk cytidylate kinase; Provisional

Probab=99.01  E-value=2.1e-08  Score=86.97  Aligned_cols=38  Identities=24%  Similarity=0.297  Sum_probs=35.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQ  100 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~  100 (273)
                      .+.|.|.|++||||||+++.|+++||+++++.|+++|.
T Consensus         4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~   41 (225)
T PRK00023          4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRA   41 (225)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHH
Confidence            46899999999999999999999999999999998775

>COG0645 Predicted kinase [General function prediction only]

Probab=98.99  E-value=2.6e-08  Score=81.51  Aligned_cols=116  Identities=17%  Similarity=0.169  Sum_probs=76.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCH---HH---HHHHHHHHHHh
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPE---DV---IFALLSKRLEE  137 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~---~~---~~~ll~~~l~~  137 (273)
                      ..+++.|.|||||||+|+.|++.+|..+|.+| .+++.+.+-... ..    ...|...+.   .+   ........+. 
T Consensus         2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD-~irk~L~g~p~~-~r----~~~g~ys~~~~~~vy~~l~~~A~l~l~-   74 (170)
T COG0645           2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSD-VIRKRLFGVPEE-TR----GPAGLYSPAATAAVYDELLGRAELLLS-   74 (170)
T ss_pred             eEEEEecCCCccHhHHHHHHHhhcCceEEehH-HHHHHhcCCccc-cc----CCCCCCcHHHHHHHHHHHHHHHHHHHh-
Confidence            46789999999999999999999999999985 566666651110 00    001111111   11   1122222222 


Q ss_pred             cccCCcceEEEeCCCCCHHHHHHHHhh----CCCceEEEEccCHHHHHHHHhcCCcC
Q 024067          138 GYYRGESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAF  190 (273)
Q Consensus       138 ~~~~~~~g~IlDg~P~~~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~  190 (273)
                          .+..+|+|+......+.+.....    .-+...|.+.++.+++..|+..|+.+
T Consensus        75 ----~G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~d  127 (170)
T COG0645          75 ----SGHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKGD  127 (170)
T ss_pred             ----CCCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCCC
Confidence                35789999977776666655443    33456799999999999999999853

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=98.98  E-value=1.3e-09  Score=109.23  Aligned_cols=38  Identities=21%  Similarity=0.305  Sum_probs=35.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE  101 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~  101 (273)
                      +.|.|.|||||||||+|+.||+++|+.|++++.+.|..
T Consensus         2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~   39 (712)
T PRK09518          2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRAC   39 (712)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHH
Confidence            47899999999999999999999999999999998863

>TIGR00017 cmk cytidylate kinase

Probab=98.96  E-value=3.1e-08  Score=85.42  Aligned_cols=39  Identities=18%  Similarity=0.251  Sum_probs=35.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE  101 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~  101 (273)
                      ++.|.|.||+||||||+++.|++++++++++.|++.+..
T Consensus         2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~   40 (217)
T TIGR00017         2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAI   40 (217)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHH
Confidence            368999999999999999999999999999999988754

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=98.95  E-value=1.1e-08  Score=85.76  Aligned_cols=107  Identities=20%  Similarity=0.141  Sum_probs=64.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh---C--CCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHH---HHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIF---ALLS  132 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~---g--~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~---~ll~  132 (273)
                      .++..|+|+|+|||||||+++.|+..+   |  +.+++.+ -+++.+..+              ..+.++...   ..+.
T Consensus        16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d-~~r~~l~~~--------------~~~~~~~~~~~~~~~~   80 (184)
T TIGR00455        16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGD-NVRHGLNKD--------------LGFSEEDRKENIRRIG   80 (184)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCh-HHHhhhccc--------------cCCCHHHHHHHHHHHH
Confidence            357899999999999999999999987   2  4566654 344332211              111111111   1111


Q ss_pred             HHHHhcccCCcceEEEeCCCCCHHHHHHHHhhC--CCceEEEEccCHHHHHHH
Q 024067          133 KRLEEGYYRGESGFILDGIPRTRIQAEILDQIV--DVDLVINFKSIEDQLVKR  183 (273)
Q Consensus       133 ~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~--~~d~vI~L~~~~e~l~~R  183 (273)
                      ..... ....+..+|+|..-....+...+....  .+..+|+|++|.+++.+|
T Consensus        81 ~~~~~-~~~~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R  132 (184)
T TIGR00455        81 EVAKL-FVRNGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQR  132 (184)
T ss_pred             HHHHH-HHcCCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHh
Confidence            11110 012357788897655566666665442  245789999999999988

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>TIGR00235 udk uridine kinase

Probab=98.94  E-value=7.7e-09  Score=88.37  Aligned_cols=124  Identities=17%  Similarity=0.169  Sum_probs=68.3

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhC---CCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSKLLE---VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLE  136 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~g---~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~  136 (273)
                      |.++..|.|.|++||||||+++.|+..++   +.+++.|+.+......  ...+........-...+.+.+.+.+.....
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~   80 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHL--EMAERKKTNFDHPDAFDNDLLYEHLKNLKN   80 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhC--CHHHhcCCCCCCccHhHHHHHHHHHHHHHC
Confidence            46788999999999999999999999885   5677777654311000  000000000000000011111222211111


Q ss_pred             hc-------------------ccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCc
Q 024067          137 EG-------------------YYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA  189 (273)
Q Consensus       137 ~~-------------------~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~  189 (273)
                      ..                   ......-||+||++.-...  .+.  ..+|++|+++++.++.+.|+..|..
T Consensus        81 g~~v~~p~yd~~~~~~~~~~~~~~~~~~vIieG~~~~~~~--~~~--~~~d~~I~v~~~~~~~l~R~~~R~~  148 (207)
T TIGR00235        81 GSPIDVPVYDYVNHTRPKETVHIEPKDVVILEGIMPLFDE--RLR--DLMDLKIFVDTPLDIRLIRRIERDI  148 (207)
T ss_pred             CCCEecccceeecCCCCCceEEeCCCCEEEEEehhhhchH--hHH--HhCCEEEEEECChhHHHHHHHHHHH
Confidence            00                   0012355788987653221  122  2478999999999999999988753

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=98.93  E-value=5.8e-10  Score=87.02  Aligned_cols=112  Identities=20%  Similarity=0.104  Sum_probs=58.1

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcc-cCCcc
Q 024067           66 WVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY-YRGES  144 (273)
Q Consensus        66 Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~-~~~~~  144 (273)
                      |+|.|+|||||||+|+.|+++++..+.   +..............   ...........+....++........ .....
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERLGDIIR---DIAPEEDIVDSIDDN---PDWKENKRLDMEFQDELLDSIIQAIRRMNKGR   74 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHCHHHH---HHHHHTTSHSSHCCH---HCCCCCCCSCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             CEEECCCCCCHHHHHHHHHHHHCcHHH---HHHHhcCCccccccc---chhhhhhhhhhhhHHHHHHHHHHhhcccccCC
Confidence            789999999999999999999822111   112111110000000   00112222333333333322222110 12357


Q ss_pred             eEEEeCCCCCHHHHHHHHhhCCCceE-EEEccCHHHHHHHHhcCCc
Q 024067          145 GFILDGIPRTRIQAEILDQIVDVDLV-INFKSIEDQLVKRNLESEA  189 (273)
Q Consensus       145 g~IlDg~P~~~~qa~~l~~~~~~d~v-I~L~~~~e~l~~Rl~~R~~  189 (273)
                      .+|+|+........      ...... |+|+|+++++.+|+..|..
T Consensus        75 ~~iid~~~~~~~~~------~~~~~~~i~L~~~~e~~~~R~~~R~~  114 (129)
T PF13238_consen   75 NIIIDGILSNLELE------RLFDIKFIFLDCSPEELRKRLKKRGR  114 (129)
T ss_dssp             CEEEEESSEEECET------TEEEESSEEEE--HHHHHHHHHCTTT
T ss_pred             cEEEecccchhccc------ccceeeEEEEECCHHHHHHHHHhCCC
Confidence            78999875332210      112223 9999999999999999875

...

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=98.93  E-value=7.6e-08  Score=86.34  Aligned_cols=149  Identities=13%  Similarity=0.077  Sum_probs=81.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~  141 (273)
                      .+..|+|+|++||||||+++.|. ..|+.+++.-                           |..++..++.. +.+....
T Consensus         5 ~~~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d~~---------------------------~~~L~~~l~~~-~~~~~~~   55 (288)
T PRK05416          5 PMRLVIVTGLSGAGKSVALRALE-DLGYYCVDNL---------------------------PPSLLPKLVEL-LAQSGGI   55 (288)
T ss_pred             CceEEEEECCCCCcHHHHHHHHH-HcCCeEECCc---------------------------CHHHHHHHHHH-HHhcCCC
Confidence            45689999999999999999996 5587776431                           11122222211 1111001


Q ss_pred             CcceEEEeCCCCCH-----HHHHHHHhhCCCceEEEEccCHHHHHHHHhcCC-cCCCcccccccCCCCCCCCCcHHHHHH
Q 024067          142 GESGFILDGIPRTR-----IQAEILDQIVDVDLVINFKSIEDQLVKRNLESE-AFSPHKEFLRLGGARFSAADAASAWKE  215 (273)
Q Consensus       142 ~~~g~IlDg~P~~~-----~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~-~~~~~~~~y~~~~~~~~~~d~~e~~~~  215 (273)
                      ..--+++|-.-...     .....|...+....+|+|+++.+++.+|+..++ .+|            ...+.   .+.+
T Consensus        56 ~~~av~iD~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~~rr~RP------------Ll~~~---~l~e  120 (288)
T PRK05416         56 RKVAVVIDVRSRPFFDDLPEALDELRERGIDVRVLFLDASDEVLIRRYSETRRRHP------------LSGDG---SLLE  120 (288)
T ss_pred             CCeEEEEccCchhhHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHhhcccCCC------------ccCCc---cHHH
Confidence            12346777532221     112223222333468999999999999997532 222            11111   1111


Q ss_pred             HHHHHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHHHHh
Q 024067          216 KFRIYAEQGKSLEDYYSKQRKLLNFQVA-AAPGETWQGLLSALHL  259 (273)
Q Consensus       216 rl~~y~~~~~~l~~~y~~~~~~~~id~~-~s~~ev~~~I~~~l~~  259 (273)
                      .+..   ....+..+|+..+  +.||++ .+++++.++|...+..
T Consensus       121 ~I~~---eR~~l~pl~~~AD--ivIDTs~ls~~el~e~I~~~l~~  160 (288)
T PRK05416        121 GIEL---ERELLAPLRERAD--LVIDTSELSVHQLRERIRERFGG  160 (288)
T ss_pred             HHHH---HHhhhhhHHHhCC--EEEECCCCCHHHHHHHHHHHHhc
Confidence            1221   2222334454444  456765 4899999999998854

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=98.91  E-value=2.6e-08  Score=84.27  Aligned_cols=30  Identities=23%  Similarity=0.235  Sum_probs=27.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCee
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHI   92 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~i   92 (273)
                      .+.|+|.|+-|+||||+|+.||+++|+.++
T Consensus         4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~   33 (216)
T COG1428           4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVF   33 (216)
T ss_pred             ccEEEEecccccCHHHHHHHHHHHhCCcee
Confidence            568999999999999999999999997654

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=98.90  E-value=4.1e-08  Score=97.73  Aligned_cols=40  Identities=20%  Similarity=0.169  Sum_probs=36.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE  101 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~  101 (273)
                      +.++|.|.||+||||||+++.||+++|++|++++.++|..
T Consensus       441 ~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~  480 (661)
T PRK11860        441 RVPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLT  480 (661)
T ss_pred             CcceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHH
Confidence            3568999999999999999999999999999999999864

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional

Probab=98.88  E-value=3.6e-08  Score=99.80  Aligned_cols=40  Identities=25%  Similarity=0.209  Sum_probs=36.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE  101 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~  101 (273)
                      .++.|.|.|||||||||+|+.||++|++.||++|.++|..
T Consensus        33 ~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~   72 (863)
T PRK12269         33 GTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAF   72 (863)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH
Confidence            3458999999999999999999999999999999999864

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=98.87  E-value=2.2e-07  Score=87.69  Aligned_cols=40  Identities=35%  Similarity=0.419  Sum_probs=33.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCee-chhHHHHHHc
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHI-SMGSLVRQEL  102 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~i-s~~dllr~~~  102 (273)
                      +|..|+++|+||+||||++..||+++|+.++ ++ |.+++.+
T Consensus       254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~t-D~iR~~l  294 (475)
T PRK12337        254 RPLHVLIGGVSGVGKSVLASALAYRLGITRIVST-DAVREVL  294 (475)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeeh-hHHHHHH
Confidence            6889999999999999999999999999854 55 5666543

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=98.86  E-value=2.9e-08  Score=95.62  Aligned_cols=100  Identities=12%  Similarity=0.046  Sum_probs=75.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccc
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY  140 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~  140 (273)
                      .++..|+++|+|||||||+|+.+++..|+.+|+.|.+-.                        .+.....+.+.|..   
T Consensus       367 ~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg~------------------------~~~~~~~a~~~L~~---  419 (526)
T TIGR01663       367 APCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLGS------------------------TQNCLTACERALDQ---  419 (526)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHHH------------------------HHHHHHHHHHHHhC---
Confidence            457789999999999999999999999999999976521                        01122334555554   


Q ss_pred             CCcceEEEeCCCCCHHHHHHHHhh----CCCceEEEEccCHHHHHHHHhcCCc
Q 024067          141 RGESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEA  189 (273)
Q Consensus       141 ~~~~g~IlDg~P~~~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~  189 (273)
                        +..+|+|..-.+..+...+..+    ..+-.+|+|++|.+++..|...|..
T Consensus       420 --G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~  470 (526)
T TIGR01663       420 --GKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFREL  470 (526)
T ss_pred             --CCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhcc
Confidence              4789999987776666555332    3455789999999999999988864

Note that the EC number for the kinase function is: 2.7.1.78

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=98.86  E-value=1e-07  Score=85.53  Aligned_cols=179  Identities=15%  Similarity=0.141  Sum_probs=90.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCe-echhHHHHHHccCC--C----hHHHHHHHHHH--CCCCCCHH-H-----
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPH-ISMGSLVRQELSPR--S----ALYKQIANAVN--EGKLVPED-V-----  126 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~-is~~dllr~~~~~~--~----~~g~~i~~~l~--~g~~~~~~-~-----  126 (273)
                      +|+.|+|.|++||||||+|..||++||..+ |+ .|.+++.+..-  .    .+.........  .+.+-+++ .     
T Consensus        91 ~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~-~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l~g~~  169 (301)
T PRK04220         91 EPIIILIGGASGVGTSTIAFELASRLGIRSVIG-TDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVIYGFE  169 (301)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEe-chHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhhhhHH
Confidence            578999999999999999999999999985 55 46666443310  0    01000000011  01111221 1     


Q ss_pred             -----HHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCc-eEEEEcc-CHHHHHHHHhcCCcCCCccccccc
Q 024067          127 -----IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVD-LVINFKS-IEDQLVKRNLESEAFSPHKEFLRL  199 (273)
Q Consensus       127 -----~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d-~vI~L~~-~~e~l~~Rl~~R~~~~~~~~~y~~  199 (273)
                           +...+...+.... ..+...|+.|..-.......+.. ..++ +.+++.+ +++...+|+..|..+.  .     
T Consensus       170 ~~~~~v~~gi~~~I~~~~-~~g~s~IiEGvhl~P~~i~~~~~-~~~~~i~~~l~i~~ee~h~~RF~~R~~~~--~-----  240 (301)
T PRK04220        170 RHVEPVSVGVEAVIERAL-KEGISVIIEGVHIVPGFIKEKYL-ENPNVFMFVLTLSDEEAHKARFYARARVS--R-----  240 (301)
T ss_pred             HHHHHHHHHHHHHHHHHH-HhCCcEEEecCCCCHHHHHHhhh-cCCCEEEEEEEECCHHHHHHHHHHHHhhh--C-----
Confidence                 1111222222211 13578999997665554332211 1232 3444444 5688999998776432  0     


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067          200 GGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ  260 (273)
Q Consensus       200 ~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~  260 (273)
                           +++   +.+-+-+..++...+-+.+--++.+ +-.|| +.+.++..+.+.+.+..+
T Consensus       241 -----r~~---~~y~~~~~~ir~iq~~l~~~a~~~~-ip~I~-n~~i~~s~~~~~~~i~~~  291 (301)
T PRK04220        241 -----RPA---ERYLKNFEIIREINDYIVEKAKKHG-VPVIE-NISIEETVDKILEIITER  291 (301)
T ss_pred             -----Cch---hhHHHHHHHHHHHHHHHHHHHHHhC-CCeec-CccHHHHHHHHHHHHHHH
Confidence                 111   1122222222222222333334444 33456 467777777777666554

>PRK03846 adenylylsulfate kinase; Provisional

Probab=98.85  E-value=4.5e-08  Score=83.09  Aligned_cols=105  Identities=14%  Similarity=0.156  Sum_probs=60.7

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCC---HHHHHHHH
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP---EDVIFALL  131 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~---~~~~~~ll  131 (273)
                      +.+|..|+|+|++||||||+++.|+..+     +..+++.+++- +.+....            + ..+   .+.+..+.
T Consensus        21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~-~~~~~~~------------~-~~~~~~~~~~~~l~   86 (198)
T PRK03846         21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR-HGLCSDL------------G-FSDADRKENIRRVG   86 (198)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH-hhhhhcC------------C-cCcccHHHHHHHHH
Confidence            3578899999999999999999999987     34666655443 2221100            0 011   12222221


Q ss_pred             H--HHHHhcccCCcceEEEeCCCC-CHHHHHHHHhhC-CCce-EEEEccCHHHHHHH
Q 024067          132 S--KRLEEGYYRGESGFILDGIPR-TRIQAEILDQIV-DVDL-VINFKSIEDQLVKR  183 (273)
Q Consensus       132 ~--~~l~~~~~~~~~g~IlDg~P~-~~~qa~~l~~~~-~~d~-vI~L~~~~e~l~~R  183 (273)
                      .  ..+..     ...+|+..|.. ...+.+.+.... ...+ +|+|++|.+++.+|
T Consensus        87 ~~a~~~~~-----~G~~VI~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R  138 (198)
T PRK03846         87 EVAKLMVD-----AGLVVLTAFISPHRAERQMVRERLGEGEFIEVFVDTPLAICEAR  138 (198)
T ss_pred             HHHHHHhh-----CCCEEEEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhc
Confidence            1  11111     12345555654 334455554432 2344 89999999999999

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.84  E-value=9.4e-08  Score=80.60  Aligned_cols=161  Identities=20%  Similarity=0.198  Sum_probs=83.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC-----CCeechhHHHHHHccCC-ChHHH-HHHHHHHCCCCCCHHHHHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQELSPR-SALYK-QIANAVNEGKLVPEDVIFALLSKRL  135 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g-----~~~is~~dllr~~~~~~-~~~g~-~i~~~l~~g~~~~~~~~~~ll~~~l  135 (273)
                      ++.|+++|+|||||||.|+.|++.+.     +.+++. |.++--.... -+..+ ..++.+.       +-...++..++
T Consensus         1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k-dy~~~i~~DEslpi~ke~yres~~-------ks~~rlldSal   72 (261)
T COG4088           1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK-DYLRGILWDESLPILKEVYRESFL-------KSVERLLDSAL   72 (261)
T ss_pred             CceEEEecCCCCCchHHHHHHHHHHHHhhhhccccch-hhhhheecccccchHHHHHHHHHH-------HHHHHHHHHHh
Confidence            46789999999999999999999883     233332 1222111111 11111 1111111       11223444444


Q ss_pred             HhcccCCcceEEEeCCC--CC-HHHHHHHH-hhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHH
Q 024067          136 EEGYYRGESGFILDGIP--RT-RIQAEILD-QIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAAS  211 (273)
Q Consensus       136 ~~~~~~~~~g~IlDg~P--~~-~~qa~~l~-~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e  211 (273)
                      .      +.-+|+|..-  .+ +.|..... ....+-.||++.||.+++++|-.+|.. +                -.+|
T Consensus        73 k------n~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~erge-p----------------ip~E  129 (261)
T COG4088          73 K------NYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERGE-P----------------IPEE  129 (261)
T ss_pred             c------ceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCCC-C----------------CCHH
Confidence            3      3557888632  22 23332221 224567899999999999999866653 1                0135


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHH
Q 024067          212 AWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALH  258 (273)
Q Consensus       212 ~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~  258 (273)
                      .+++.+..|.+-...    ++=..-++.||......++...|...+.
T Consensus       130 vl~qly~RfEePn~~----~rWDspll~id~~d~~t~~IDfiesvl~  172 (261)
T COG4088         130 VLRQLYDRFEEPNPD----RRWDSPLLVIDDSDVSTEVIDFIESVLR  172 (261)
T ss_pred             HHHHHHHhhcCCCCC----ccccCceEEEecccccccchhHHHHHHH
Confidence            666656665432210    1101135667644444455555554444

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.83  E-value=3.8e-08  Score=97.59  Aligned_cols=160  Identities=12%  Similarity=0.065  Sum_probs=89.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHH----HHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV----IFALL  131 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~----~~~ll  131 (273)
                      .++..|+++|.|||||||+|+.|++++     ++.+|+.|+ +|+.+..+              ....++.    +..+.
T Consensus       458 ~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~-~r~~l~~~--------------~~~~~~~r~~~~~~l~  522 (632)
T PRK05506        458 QKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDN-VRHGLNRD--------------LGFSDADRVENIRRVA  522 (632)
T ss_pred             CCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChh-hhhccCCC--------------CCCCHHHHHHHHHHHH
Confidence            468899999999999999999999997     346777754 55443321              1122221    11111


Q ss_pred             HHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhC--CCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCc
Q 024067          132 SKRLEEGYYRGESGFILDGIPRTRIQAEILDQIV--DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADA  209 (273)
Q Consensus       132 ~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~--~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~  209 (273)
                      ..+...  ...+..+|+|..-....+.+.+....  .+..+|+|+++.+++.+|. .|..       |..        ..
T Consensus       523 ~~a~~~--~~~G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~-~r~L-------~~~--------~~  584 (632)
T PRK05506        523 EVARLM--ADAGLIVLVSFISPFREERELARALHGEGEFVEVFVDTPLEVCEARD-PKGL-------YAK--------AR  584 (632)
T ss_pred             HHHHHH--HhCCCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhC-Ccch-------hhh--------cc
Confidence            111110  11245678887543444555554432  2347999999999999993 2221       100        00


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeC-CCChhHHHHHHHHHHHhc
Q 024067          210 ASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQV-AAAPGETWQGLLSALHLQ  260 (273)
Q Consensus       210 ~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~-~~s~~ev~~~I~~~l~~~  260 (273)
                          ...+..+....   ..|+....--+.||+ ..+++++.++|...|..+
T Consensus       585 ----~~~l~~l~~~r---~~y~~P~~a~~~Id~~~~s~~e~v~~Ii~~l~~~  629 (632)
T PRK05506        585 ----AGEIKNFTGID---SPYEAPENPELRLDTTGRSPEELAEQVLELLRRR  629 (632)
T ss_pred             ----ccccccccccc---cCCCCCCCCeEEEeCCCCCHHHHHHHHHHHHHHc
Confidence                00111111111   113321112366776 568999999999998763

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=98.80  E-value=1.7e-08  Score=84.95  Aligned_cols=36  Identities=17%  Similarity=0.146  Sum_probs=32.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh-CCCeechhHHHHH
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQ  100 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~-g~~~is~~dllr~  100 (273)
                      +|.|.|+|||||||+|+.|++.+ ++.+|++|++...
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~   37 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKP   37 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCC
Confidence            37799999999999999999999 7999999988763

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PRK07667 uridine kinase; Provisional

Probab=98.79  E-value=2.9e-08  Score=84.02  Aligned_cols=122  Identities=7%  Similarity=0.003  Sum_probs=66.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC-----CCeechhHHHHHHcc----CCChH-------------HHHHHHHHHCC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQELS----PRSAL-------------YKQIANAVNEG  119 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g-----~~~is~~dllr~~~~----~~~~~-------------g~~i~~~l~~g  119 (273)
                      ...+|.|.|+|||||||+|+.|++.++     +..++.|+++.....    ...+.             .+.+-..+.++
T Consensus        16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~~~   95 (193)
T PRK07667         16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQNE   95 (193)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhcCC
Confidence            447899999999999999999999873     458899987754321    11100             00110111122


Q ss_pred             CCCCHHHHHHHHHHHHHhc-ccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCC
Q 024067          120 KLVPEDVIFALLSKRLEEG-YYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE  188 (273)
Q Consensus       120 ~~~~~~~~~~ll~~~l~~~-~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~  188 (273)
                      +.+.--.+........... ......-+|+||....  ... +.  ..+|.+|+++||+++.++|+..|.
T Consensus        96 ~~i~~P~~d~~~~~~~~~~~~~~~~~vvIvEG~~l~--~~~-~~--~~~d~~v~V~~~~~~~~~R~~~r~  160 (193)
T PRK07667         96 TKLTLPFYHDETDTCEMKKVQIPIVGVIVIEGVFLQ--RKE-WR--DFFHYMVYLDCPRETRFLRESEET  160 (193)
T ss_pred             CeEEEeeeccccccccccceecCCCCEEEEEehhhh--hhh-HH--hhceEEEEEECCHHHHHHHHhccc
Confidence            1110000000000000000 0011355778886421  111 21  246899999999999999998864

>PRK06696 uridine kinase; Validated

Probab=98.79  E-value=4.3e-08  Score=84.76  Aligned_cols=39  Identities=21%  Similarity=0.313  Sum_probs=32.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh---CCC--eechhHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVP--HISMGSLVR   99 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~---g~~--~is~~dllr   99 (273)
                      .++.+|.|.|++||||||+|+.|++.+   |.+  ++++|++..
T Consensus        20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~   63 (223)
T PRK06696         20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN   63 (223)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence            468899999999999999999999999   544  455787764

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=98.77  E-value=9.4e-08  Score=79.51  Aligned_cols=157  Identities=18%  Similarity=0.198  Sum_probs=83.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCC--CeechhHHHHHHccCCChHHHHHHHHHHCCCCC------C--HH---HHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEV--PHISMGSLVRQELSPRSALYKQIANAVNEGKLV------P--ED---VIFA  129 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~--~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~------~--~~---~~~~  129 (273)
                      +.+|+|-|+|-|||||+|+.|.+.+.-  .|+++|.++.. +.++.         ...+.-+      +  ..   .+..
T Consensus         1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~-~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~   70 (174)
T PF07931_consen    1 GQIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDM-MPPGR---------YRPGDGLEPAGDRPDGGPLFRRLYA   70 (174)
T ss_dssp             --EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHH-S-GGG---------GTSTTSEEEETTSEEE-HHHHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhh-cCccc---------ccCCccccccccCCchhHHHHHHHH
Confidence            357999999999999999999999964  57888887763 22110         0011000      0  01   1122


Q ss_pred             HHHHHHHhcccCCcceEEEeCCCCCHHH-HHHHHh-h-CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCC
Q 024067          130 LLSKRLEEGYYRGESGFILDGIPRTRIQ-AEILDQ-I-VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSA  206 (273)
Q Consensus       130 ll~~~l~~~~~~~~~g~IlDg~P~~~~q-a~~l~~-~-~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~  206 (273)
                      .+...+... ...+.++|+|....+... .+.+.. + ..+-++|-+.||.+++.+|-..|....               
T Consensus        71 ~~~~~iaa~-a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~RgDR~---------------  134 (174)
T PF07931_consen   71 AMHAAIAAM-ARAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARGDRP---------------  134 (174)
T ss_dssp             HHHHHHHHH-HHTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHTSSS---------------
T ss_pred             HHHHHHHHH-HhCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcCCcc---------------
Confidence            222222221 134688999987655443 455533 3 344579999999999999988876321               


Q ss_pred             CCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCC-ChhHHHHHHHHHHH
Q 024067          207 ADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAA-APGETWQGLLSALH  258 (273)
Q Consensus       207 ~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~-s~~ev~~~I~~~l~  258 (273)
                      ..   ....+   |..-....  -|.     ++||++. +|+|..+.|++.|+
T Consensus       135 ~G---~a~~q---~~~Vh~~~--~YD-----leVDTs~~sp~ecA~~I~~~~~  174 (174)
T PF07931_consen  135 IG---LAAWQ---AEHVHEGG--RYD-----LEVDTSATSPEECAREILARLE  174 (174)
T ss_dssp             TT---HHHHH---TTGGGTT-----S-----EEEETTSS-HHHHHHHHHTT--
T ss_pred             hH---HHHHH---HhhcccCC--CCC-----EEEECCCCCHHHHHHHHHHHhC
Confidence            11   11111   11000111  122     6789885 89999999988763

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>PLN02772 guanylate kinase

Probab=98.75  E-value=2.1e-07  Score=86.18  Aligned_cols=172  Identities=13%  Similarity=0.089  Sum_probs=97.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCC-CeechhHHHHHHccC---CChH----HHHHHHHHHCCCCCCHH--------
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEV-PHISMGSLVRQELSP---RSAL----YKQIANAVNEGKLVPED--------  125 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~-~~is~~dllr~~~~~---~~~~----g~~i~~~l~~g~~~~~~--------  125 (273)
                      ..+.|+|+||+|+||+|+.++|.+.+.. ..++....-|..-..   +..+    -+.+...+.+|..+...        
T Consensus       134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~YG  213 (398)
T PLN02772        134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYG  213 (398)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCcccc
Confidence            5568999999999999999999987632 111221112211110   0000    13455555555544321        


Q ss_pred             HHHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCC
Q 024067          126 VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFS  205 (273)
Q Consensus       126 ~~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~  205 (273)
                      +-...+...+.+     ++.+|+|--|....+....  ...+-.++++..+.+++.+|+..|..                
T Consensus       214 Tsk~~V~~vl~~-----Gk~vILdLD~qGar~Lr~~--~l~~v~IFI~PPSlEeLe~RL~~RGt----------------  270 (398)
T PLN02772        214 TSIEAVEVVTDS-----GKRCILDIDVQGARSVRAS--SLEAIFIFICPPSMEELEKRLRARGT----------------  270 (398)
T ss_pred             ccHHHHHHHHHh-----CCcEEEeCCHHHHHHHHHh--cCCeEEEEEeCCCHHHHHHHHHhcCC----------------
Confidence            123344444444     4678888665554443322  12332344444458999999998873                


Q ss_pred             CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcCC
Q 024067          206 AADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHM  262 (273)
Q Consensus       206 ~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~~  262 (273)
                        ++++.+++|++.+....... . |...-..+.+|  .++++.+++|.++|.....
T Consensus       271 --eseE~I~kRL~~A~~Ei~~~-~-~~~~fD~vIvN--DdLe~A~~~L~~iL~~~~~  321 (398)
T PLN02772        271 --ETEEQIQKRLRNAEAELEQG-K-SSGIFDHILYN--DNLEECYKNLKKLLGLDGL  321 (398)
T ss_pred             --CCHHHHHHHHHHHHHHHhhc-c-ccCCCCEEEEC--CCHHHHHHHHHHHHhhcCc
Confidence              24678999999886543210 0 11111123333  4899999999999976654

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=98.73  E-value=1.7e-07  Score=76.04  Aligned_cols=106  Identities=20%  Similarity=0.103  Sum_probs=61.0

Q ss_pred             EEEEcCCCCChhHHHHHHHHHh---CC--CeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHH--HHHHHhc
Q 024067           66 WVLIGDPGVKKHVYADNLSKLL---EV--PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALL--SKRLEEG  138 (273)
Q Consensus        66 Ivi~G~pGSGKsT~a~~La~~~---g~--~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll--~~~l~~~  138 (273)
                      |+|+|+|||||||+++.|++.+   +.  .+++. |-+++.+.....+..        .  -..+.+..+.  ...+.. 
T Consensus         2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~-d~~r~~l~~~~~~~~--------~--~~~~~~~~~~~~a~~l~~-   69 (149)
T cd02027           2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDG-DNVRHGLNKDLGFSR--------E--DREENIRRIAEVAKLLAD-   69 (149)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcC-HHHHHhhhhccCCCc--------c--hHHHHHHHHHHHHHHHHh-
Confidence            6899999999999999999998   54  44554 334433221100000        0  0011111111  111221 


Q ss_pred             ccCCcceEEEeCCCCCHHHHHHHHhhC--CCceEEEEccCHHHHHHHHhc
Q 024067          139 YYRGESGFILDGIPRTRIQAEILDQIV--DVDLVINFKSIEDQLVKRNLE  186 (273)
Q Consensus       139 ~~~~~~g~IlDg~P~~~~qa~~l~~~~--~~d~vI~L~~~~e~l~~Rl~~  186 (273)
                         .+..+|+|..-....+...+....  .+..+|+|++|.+++.+|-..
T Consensus        70 ---~G~~VIid~~~~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~~~  116 (149)
T cd02027          70 ---AGLIVIAAFISPYREDREAARKIIGGGDFLEVFVDTPLEVCEQRDPK  116 (149)
T ss_pred             ---CCCEEEEccCCCCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhCch
Confidence               246688887655555555554443  455799999999999988543

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=98.70  E-value=6e-08  Score=81.24  Aligned_cols=164  Identities=16%  Similarity=0.135  Sum_probs=91.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCe-echhHHHHHHcc---CCCh----HHHHHHHHHHCCCCCCHH--------H
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPH-ISMGSLVRQELS---PRSA----LYKQIANAVNEGKLVPED--------V  126 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~-is~~dllr~~~~---~~~~----~g~~i~~~l~~g~~~~~~--------~  126 (273)
                      +..|+|+||+||||+|++++|.+.++-.+ ..+..-.|.--.   .+..    ..+.+..++..|+.+...        +
T Consensus         2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YGt   81 (183)
T PF00625_consen    2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYGT   81 (183)
T ss_dssp             SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhhh
Confidence            56789999999999999999999875321 111011111000   0111    113445555555433210        1


Q ss_pred             HHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccC-HHHHHHHHhcCCcCCCcccccccCCCCCC
Q 024067          127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSI-EDQLVKRNLESEAFSPHKEFLRLGGARFS  205 (273)
Q Consensus       127 ~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~-~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~  205 (273)
                      ...-+...+..     +..+|+|.-|...   ..|.....--.+||+.++ .+.+.+|+..|.                 
T Consensus        82 ~~~~i~~~~~~-----gk~~il~~~~~g~---~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r~-----------------  136 (183)
T PF00625_consen   82 SKSAIDKVLEE-----GKHCILDVDPEGV---KQLKKAGFNPIVIFIKPPSPEVLKRRLRRRG-----------------  136 (183)
T ss_dssp             EHHHHHHHHHT-----TTEEEEEETHHHH---HHHHHCTTTEEEEEEEESSHHHHHHHHHTTT-----------------
T ss_pred             ccchhhHhhhc-----CCcEEEEccHHHH---HHHHhcccCceEEEEEccchHHHHHHHhccc-----------------
Confidence            12333444444     3668887654433   334333222257888765 677877776654                 


Q ss_pred             CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067          206 AADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL  259 (273)
Q Consensus       206 ~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~  259 (273)
                       +++.+.+.+|+..+.....    ++.+.+  ..|. +.++++++++|.+.|..
T Consensus       137 -~~~~~~i~~r~~~~~~~~~----~~~~fd--~vi~-n~~le~~~~~l~~ii~~  182 (183)
T PF00625_consen  137 -DESEEEIEERLERAEKEFE----HYNEFD--YVIV-NDDLEEAVKELKEIIEQ  182 (183)
T ss_dssp             -HCHHHHHHHHHHHHHHHHG----GGGGSS--EEEE-CSSHHHHHHHHHHHHHH
T ss_pred             -cccHHHHHHHHHHHHHHHh----HhhcCC--EEEE-CcCHHHHHHHHHHHHHh
Confidence             2345677888777654332    233333  2334 35899999999999875

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=98.70  E-value=2.4e-07  Score=84.83  Aligned_cols=123  Identities=17%  Similarity=0.092  Sum_probs=70.2

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhC------CCeechhHHHHHHcc------CCChHHHHHH----HHH-------HCCCCC
Q 024067           66 WVLIGDPGVKKHVYADNLSKLLE------VPHISMGSLVRQELS------PRSALYKQIA----NAV-------NEGKLV  122 (273)
Q Consensus        66 Ivi~G~pGSGKsT~a~~La~~~g------~~~is~~dllr~~~~------~~~~~g~~i~----~~l-------~~g~~~  122 (273)
                      .+|+|+|||||||+++.|++.+.      +.+++.||++.....      +..+.++..+    .++       .+|...
T Consensus         2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~k~~R~~i~~~le~~v~a~~~g~~~   81 (340)
T TIGR03575         2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQWKQFRQELLKYLEHFLVAVINGSEL   81 (340)
T ss_pred             eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence            58999999999999999998875      348999998842221      1122333222    211       223222


Q ss_pred             CH------HHHH---HHHH----------------HHHHhcccCCcceEEEeCCCCCHHHHHHHHh----hCCCceEEEE
Q 024067          123 PE------DVIF---ALLS----------------KRLEEGYYRGESGFILDGIPRTRIQAEILDQ----IVDVDLVINF  173 (273)
Q Consensus       123 ~~------~~~~---~ll~----------------~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~----~~~~d~vI~L  173 (273)
                      ..      .+..   ..+.                .++.........-+|+|+......++..+..    ...+..+|++
T Consensus        82 ~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~LsrpllvilDd~fy~ks~Ryel~~LAr~~~~~~~~V~l  161 (340)
T TIGR03575        82 SAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFL  161 (340)
T ss_pred             cCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCCCceecCCCCCHHHHHHHHHHHHHhCCCEEEEEE
Confidence            11      1111   1110                1111100001123788886655555544432    2345589999


Q ss_pred             ccCHHHHHHHHhcCC
Q 024067          174 KSIEDQLVKRNLESE  188 (273)
Q Consensus       174 ~~~~e~l~~Rl~~R~  188 (273)
                      ++|.+++++|..+|.
T Consensus       162 d~ple~~l~RN~~R~  176 (340)
T TIGR03575       162 DCPVESCLLRNKQRP  176 (340)
T ss_pred             eCCHHHHHHHHhcCC
Confidence            999999999999885

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.70  E-value=1.9e-07  Score=78.96  Aligned_cols=35  Identities=26%  Similarity=0.275  Sum_probs=29.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh---CCCeechhHHHH
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVR   99 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~---g~~~is~~dllr   99 (273)
                      .|.|.|++||||||+++.|+..+   ++.+++.|++..
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~   38 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYK   38 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccccc
Confidence            37899999999999999999987   467888887663

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=98.64  E-value=4.8e-07  Score=80.50  Aligned_cols=156  Identities=19%  Similarity=0.130  Sum_probs=73.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh-----CCCeechhHHHHHHcc-CCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQELS-PRSALYKQIANAVNEGKLVPEDVIFALLSKRLE  136 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~~dllr~~~~-~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~  136 (273)
                      |+.|+|+|.|||||||+|+.|++.+     .+.+++.+++...... ..+...+.++.           .+...+...+.
T Consensus         1 MpLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~-----------~l~s~v~r~ls   69 (270)
T PF08433_consen    1 MPLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARG-----------SLKSAVERALS   69 (270)
T ss_dssp             E-EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHH-----------HHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHH-----------HHHHHHHHhhc
Confidence            3589999999999999999999985     3456765444411111 01111111111           12222333332


Q ss_pred             hcccCCcceEEEeCCCCCHHHHH---HHHh-hCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHH
Q 024067          137 EGYYRGESGFILDGIPRTRIQAE---ILDQ-IVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASA  212 (273)
Q Consensus       137 ~~~~~~~~g~IlDg~P~~~~qa~---~l~~-~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~  212 (273)
                           ...-+|+|+--.-.....   .+.. ......+|+++|+.+.+++|-..|....               .-.++.
T Consensus        70 -----~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~---------------~~~~e~  129 (270)
T PF08433_consen   70 -----KDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPE---------------RYPEET  129 (270)
T ss_dssp             -----T-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S-----------------S-HHH
T ss_pred             -----cCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCC---------------CCCHHH
Confidence                 246789998543333332   2222 2445679999999999999998887421               123456


Q ss_pred             HHHHHHHHHHhhHHHHHHHHhcCcEEEEeC-CC--ChhHHHHHH
Q 024067          213 WKEKFRIYAEQGKSLEDYYSKQRKLLNFQV-AA--APGETWQGL  253 (273)
Q Consensus       213 ~~~rl~~y~~~~~~l~~~y~~~~~~~~id~-~~--s~~ev~~~I  253 (273)
                      +.+....|+.-..    -.+=...++.|+. +.  +.+++|..|
T Consensus       130 i~~m~~RfE~P~~----~nrWD~plf~i~~~~~~~~~~~I~~~l  169 (270)
T PF08433_consen  130 IDDMIQRFEEPDP----KNRWDSPLFTIDSSDEELPLEEIWNAL  169 (270)
T ss_dssp             HHHHHHH---TTS----S-GGGS-SEEEE-TTS---HHHHHHHH
T ss_pred             HHHHHHHhcCCCC----CCCccCCeEEEecCCCCCCHHHHHHHH
Confidence            6666666653221    0110123677773 22  345666666

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=98.64  E-value=1.2e-07  Score=80.49  Aligned_cols=117  Identities=14%  Similarity=0.173  Sum_probs=64.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh---CCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCC-------HHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP-------EDVIFAL  130 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~---g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~-------~~~~~~l  130 (273)
                      .+|..+++.|+|||||||++..+...+   ++.+|+.|++ +...+.    +..+...  ......       ..+...+
T Consensus        13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~-r~~~p~----~~~~~~~--~~~~~~~~~~~~a~~~~~~~   85 (199)
T PF06414_consen   13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEF-RQFHPD----YDELLKA--DPDEASELTQKEASRLAEKL   85 (199)
T ss_dssp             SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGG-GGGSTT----HHHHHHH--HCCCTHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHH-HHhccc----hhhhhhh--hhhhhHHHHHHHHHHHHHHH
Confidence            578899999999999999999999987   6888998765 333321    1111111  000000       1123344


Q ss_pred             HHHHHHhcccCCcceEEEeCCCCCHHHHH-HHHhh---CCCceEEEEccCHHHHHHHHhcCCc
Q 024067          131 LSKRLEEGYYRGESGFILDGIPRTRIQAE-ILDQI---VDVDLVINFKSIEDQLVKRNLESEA  189 (273)
Q Consensus       131 l~~~l~~~~~~~~~g~IlDg~P~~~~qa~-~l~~~---~~~d~vI~L~~~~e~l~~Rl~~R~~  189 (273)
                      +...+..     ...+|+|+..++..... .++.+   +---.++++.++++..+.|...|..
T Consensus        86 ~~~a~~~-----~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv~~R~~  143 (199)
T PF06414_consen   86 IEYAIEN-----RYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELSIERVRQRYE  143 (199)
T ss_dssp             HHHHHHC-----T--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHHHHHHHHHHH
T ss_pred             HHHHHHc-----CCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHHHHHHHHHHH
Confidence            4444443     47899999877655544 33333   2223578888999999999988753

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>PHA03132 thymidine kinase; Provisional

Probab=98.62  E-value=1e-06  Score=85.44  Aligned_cols=125  Identities=16%  Similarity=0.164  Sum_probs=71.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHH--HHHccCCChHHHHHHHHHHCCC---CCCHHHHH--------
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLV--RQELSPRSALYKQIANAVNEGK---LVPEDVIF--------  128 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dll--r~~~~~~~~~g~~i~~~l~~g~---~~~~~~~~--------  128 (273)
                      +++.|+|.|..||||||+++.|++.+|..++-+.+=.  +...  .+..++.|.+.+.++.   .-+...+.        
T Consensus       256 ~~~fIv~EGidGsGKTTlik~L~e~lg~~Vi~t~EP~~~W~~v--y~n~l~~I~~~~~r~~~g~~s~~~ella~Ql~FA~  333 (580)
T PHA03132        256 PACFLFLEGVMGVGKTTLLNHMRGILGDNVLVFPEPMRYWTEV--YSNCLKEIYKLVKPGKHGKTSTSAKLLACQMKFAT  333 (580)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHhCCceEEEeCCCCchhhc--cccHHHHHHHHHhcccccCCCHHHHHHHHHHHHhh
Confidence            4789999999999999999999999854443221100  0000  0245667777665432   21111111        


Q ss_pred             --HHHHHHHHh------c---ccCCcceEEEeCCCCCH-H-H---------------HHHHHhh--CCCceEEEEccCHH
Q 024067          129 --ALLSKRLEE------G---YYRGESGFILDGIPRTR-I-Q---------------AEILDQI--VDVDLVINFKSIED  178 (273)
Q Consensus       129 --~ll~~~l~~------~---~~~~~~g~IlDg~P~~~-~-q---------------a~~l~~~--~~~d~vI~L~~~~e  178 (273)
                        ..+..++..      .   ....+..+|.|.++.+. . +               ...+..+  ..||++|+|+++.+
T Consensus       334 Pfl~~adR~~~~~~~~~~i~p~l~~g~iVI~DRyi~Ss~avF~~~~y~~G~ls~~e~~~lL~~~~~~~PDLiIyLdv~pe  413 (580)
T PHA03132        334 PFRALATRTRRLVQPESVRRPVAPLDNWVLFDRHLLSATVVFPLMHLRNGMLSFSHFIQLLSTFRAHEGDVIVLLKLNSE  413 (580)
T ss_pred             HHHHHHHHHHHHHhhhhhccccccCCCEEEEecCccccHHHHHHhccccccCCHHHHHHHHHHhcccCCCEEEEEeCCHH
Confidence              011111111      0   11234567889876432 1 1               1112222  25899999999999


Q ss_pred             HHHHHHhcCC
Q 024067          179 QLVKRNLESE  188 (273)
Q Consensus       179 ~l~~Rl~~R~  188 (273)
                      ++++|+.+|+
T Consensus       414 ~alkRIkkRg  423 (580)
T PHA03132        414 ENLRRVKKRG  423 (580)
T ss_pred             HHHHHHHhcC
Confidence            9999998886

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins

Probab=98.62  E-value=1.7e-06  Score=76.83  Aligned_cols=147  Identities=12%  Similarity=0.089  Sum_probs=82.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~  143 (273)
                      ..|+|+|.+||||||..+.| +.+|+.+|+-                           +|..++-.++............
T Consensus         2 ~~vIiTGlSGaGKs~Al~~l-ED~Gy~cvDN---------------------------lP~~Ll~~l~~~~~~~~~~~~~   53 (284)
T PF03668_consen    2 ELVIITGLSGAGKSTALRAL-EDLGYYCVDN---------------------------LPPSLLPQLIELLAQSNSKIEK   53 (284)
T ss_pred             eEEEEeCCCcCCHHHHHHHH-HhcCeeEEcC---------------------------CcHHHHHHHHHHHHhcCCCCce
Confidence            46889999999999988777 6789888752                           2344444444332211110112


Q ss_pred             ceEEEeCCCCC----HHH-HHHHHhhCCCceEEEEccCHHHHHHHHhc-CCcCCCcccccccCCCCCCCCC-cHHHHHHH
Q 024067          144 SGFILDGIPRT----RIQ-AEILDQIVDVDLVINFKSIEDQLVKRNLE-SEAFSPHKEFLRLGGARFSAAD-AASAWKEK  216 (273)
Q Consensus       144 ~g~IlDg~P~~----~~q-a~~l~~~~~~d~vI~L~~~~e~l~~Rl~~-R~~~~~~~~~y~~~~~~~~~~d-~~e~~~~r  216 (273)
                      --+++|--...    ..+ ...+......-.+|||+|+++++++|... |+.+|.            ..+. ..+.    
T Consensus        54 ~Ai~iD~R~~~~~~~~~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR~HPL------------~~~~~~le~----  117 (284)
T PF03668_consen   54 VAIVIDIRSREFFEDLFEALDELRKKGIDVRILFLDASDEVLIRRYSETRRRHPL------------SSDGSLLEA----  117 (284)
T ss_pred             EEEEEeCCChHHHHHHHHHHHHHHhcCCceEEEEEECChHHHHHHHHhccCCCCC------------CCCCCcHHH----
Confidence            33566742221    111 11222222233699999999999999964 444441            1111 1222    


Q ss_pred             HHHHHHhhHHHHHHHHhcCcEEEEeCCC-ChhHHHHHHHHHHHh
Q 024067          217 FRIYAEQGKSLEDYYSKQRKLLNFQVAA-APGETWQGLLSALHL  259 (273)
Q Consensus       217 l~~y~~~~~~l~~~y~~~~~~~~id~~~-s~~ev~~~I~~~l~~  259 (273)
                      ++.-++...|+.+   ..+  +.||++. ++.++-+.|...+..
T Consensus       118 I~~Er~~L~~lr~---~Ad--~vIDTs~l~~~~Lr~~i~~~~~~  156 (284)
T PF03668_consen  118 IEKERELLEPLRE---RAD--LVIDTSNLSVHQLRERIRERFGG  156 (284)
T ss_pred             HHHHHHHHHHHHH---hCC--EEEECCCCCHHHHHHHHHHHhcc
Confidence            3332333344432   222  5678765 899999988888764

This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.61  E-value=2.2e-07  Score=75.81  Aligned_cols=108  Identities=21%  Similarity=0.166  Sum_probs=58.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh-----CCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHH--HHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIF--ALLSKR  134 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~--~ll~~~  134 (273)
                      +|..|.|+|.|||||||+|+.|.+++     .+.+++. |.+|+.+..+-.+..+=+          .+.+.  ..+...
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDg-D~lR~~l~~dl~fs~~dR----------~e~~rr~~~~A~l   69 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDG-DNLRHGLNADLGFSKEDR----------EENIRRIAEVAKL   69 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEH-HHHCTTTTTT--SSHHHH----------HHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecC-cchhhccCCCCCCCHHHH----------HHHHHHHHHHHHH
Confidence            47789999999999999999999998     3456665 455554433211100000          01111  111222


Q ss_pred             HHhcccCCcceEEEeCCCCCHHHHHHHHhhCC--CceEEEEccCHHHHHHHH
Q 024067          135 LEEGYYRGESGFILDGIPRTRIQAEILDQIVD--VDLVINFKSIEDQLVKRN  184 (273)
Q Consensus       135 l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~--~d~vI~L~~~~e~l~~Rl  184 (273)
                      +..    .+..+|++..--.....+.......  ..+-||++||.+++.+|=
T Consensus        70 l~~----~G~ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD  117 (156)
T PF01583_consen   70 LAD----QGIIVIVAFISPYREDREWARELIPNERFIEVYVDCPLEVCRKRD  117 (156)
T ss_dssp             HHH----TTSEEEEE----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHT
T ss_pred             HHh----CCCeEEEeeccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhC
Confidence            222    2355677654333333333333322  458999999999999984

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=98.57  E-value=1.4e-07  Score=66.33  Aligned_cols=23  Identities=26%  Similarity=0.357  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .|+|+|+|||||||+++.|++.+
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            37889999999999999999985

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.52  E-value=6.5e-07  Score=77.72  Aligned_cols=28  Identities=32%  Similarity=0.442  Sum_probs=25.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      .++.+|.|.|++||||||+++.|+..+.
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~   58 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ   58 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            4678999999999999999999999874

>COG4639 Predicted kinase [General function prediction only]

Probab=98.52  E-value=2.3e-06  Score=69.15  Aligned_cols=111  Identities=20%  Similarity=0.168  Sum_probs=69.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~  143 (273)
                      ..++++|+|||||||.++..-  .....++.+++=...       |+...+...++   .++.+.+.+.+.+++.- +.+
T Consensus         3 ~LvvL~G~~~sGKsT~ak~n~--~~~~~lsld~~r~~l-------g~~~~~e~sqk---~~~~~~~~l~~~l~qrl-~~G   69 (168)
T COG4639           3 ILVVLRGASGSGKSTFAKENF--LQNYVLSLDDLRLLL-------GVSASKENSQK---NDELVWDILYKQLEQRL-RRG   69 (168)
T ss_pred             eEEEEecCCCCchhHHHHHhC--CCcceecHHHHHHHh-------hhchhhhhccc---cHHHHHHHHHHHHHHHH-HcC
Confidence            578899999999999998642  367788887655421       11111111111   23344444444443321 225


Q ss_pred             ceEEEeCCCCCHHHHHHHHhh----CCCceEEEEccCHHHHHHHHhcC
Q 024067          144 SGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLES  187 (273)
Q Consensus       144 ~g~IlDg~P~~~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R  187 (273)
                      +-.|+|..-...++...+-..    +....+|+|+.|.+.+.+|...|
T Consensus        70 k~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~  117 (168)
T COG4639          70 KFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLR  117 (168)
T ss_pred             CeEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhcc
Confidence            778999987666666555332    44567899999999999997533

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=98.51  E-value=6.8e-07  Score=76.46  Aligned_cols=124  Identities=22%  Similarity=0.194  Sum_probs=68.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCC---eechhHHHHHHccC------C----Ch-------HHHHHHHHHHCCC
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVP---HISMGSLVRQELSP------R----SA-------LYKQIANAVNEGK  120 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~---~is~~dllr~~~~~------~----~~-------~g~~i~~~l~~g~  120 (273)
                      .++.+|.|.|++||||||+|+.|++.++..   .|+.|+.....-..      .    .+       +.+.+.. +.+|+
T Consensus         6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~-L~~g~   84 (218)
T COG0572           6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKD-LKQGK   84 (218)
T ss_pred             CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHH-HHcCC
Confidence            456888899999999999999999999865   67777766421110      0    00       1122222 22233


Q ss_pred             CCCHHHHHHHHHHHH-HhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCc
Q 024067          121 LVPEDVIFALLSKRL-EEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA  189 (273)
Q Consensus       121 ~~~~~~~~~ll~~~l-~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~  189 (273)
                      .+..-...-.-..+. .........-+||+|+---..  +.+.  -..|+-||++++.++++.|...|..
T Consensus        85 ~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d--~~lr--~~~d~kIfvdtd~D~RliRri~RD~  150 (218)
T COG0572          85 PVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYD--ERLR--DLMDLKIFVDTDADVRLIRRIKRDV  150 (218)
T ss_pred             cccccccchhcccccCCccccCCCcEEEEeccccccc--HHHH--hhcCEEEEEeCCccHHHHHHHHHHH
Confidence            221100000000000 000001245678888632211  1111  1357899999999999988877764

>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2

Probab=98.51  E-value=1.9e-06  Score=74.38  Aligned_cols=186  Identities=17%  Similarity=0.222  Sum_probs=90.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC-----CCeechhHHHHHHccC---------CChHHHHHHHHHHCCCCCCHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQELSP---------RSALYKQIANAVNEGKLVPEDV  126 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g-----~~~is~~dllr~~~~~---------~~~~g~~i~~~l~~g~~~~~~~  126 (273)
                      .....|+++|.|+.|||++|++|+..++     ..++++|+.=|+....         .++.+..+++-+.      ...
T Consensus        10 ~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a------~~~   83 (222)
T PF01591_consen   10 AGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIA------KEA   83 (222)
T ss_dssp             ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHH------HHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHH------HHH
Confidence            3567889999999999999999998773     3578888887766543         1222333332211      111


Q ss_pred             HHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhh---CC-CceEEEEccCHHHHHHHHhcCCcCCCcccccccCCC
Q 024067          127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI---VD-VDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGA  202 (273)
Q Consensus       127 ~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~---~~-~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~  202 (273)
                      +..++ ..+.+   .++.--|+|+.=.|....+.+...   .. .-++|..-|+++.++++-.......  .-.|    .
T Consensus        84 l~dl~-~~l~~---~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~--spDY----~  153 (222)
T PF01591_consen   84 LEDLI-EWLQE---EGGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNIREKKQN--SPDY----K  153 (222)
T ss_dssp             HHHHH-HHHHT---S--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHHHTT--SGGG----T
T ss_pred             HHHHH-HHHhc---CCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcC--Cccc----c
Confidence            12222 23332   134556999998888887766432   12 2245555677777666554333211  0011    1


Q ss_pred             CCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcC-cEEEEeCCCC------hhHHHHHHHHHHHhcCC
Q 024067          203 RFSAADAASAWKEKFRIYAEQGKSLEDYYSKQR-KLLNFQVAAA------PGETWQGLLSALHLQHM  262 (273)
Q Consensus       203 ~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~-~~~~id~~~s------~~ev~~~I~~~l~~~~~  262 (273)
                      ....+...+.+.+|++.|+...+|+.+-..+.- .+..+|+...      ..-+...|.-.|..-|.
T Consensus       154 ~~~~e~A~~Df~~RI~~Ye~~YEpl~~e~d~~lsyIKiin~g~~v~~n~i~GyL~srIv~~LmNlh~  220 (222)
T PF01591_consen  154 GMDPEEAIEDFKKRIEHYEKVYEPLDEEEDEDLSYIKIINVGEKVIVNNISGYLQSRIVFYLMNLHI  220 (222)
T ss_dssp             TS-HHHHHHHHHHHHHHHHTT-----TTTTTTSEEEEEETTTTEEEEE---SHHHHHHHHHHTT---
T ss_pred             cCCHHHHHHHHHHHHHhhcccccccccccccCceEEEEEcCCceEEEecccCEeHHHHHHHHhhcCC
Confidence            111233467888999999999999872222211 2444554322      23345555555555444

7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....

>PTZ00301 uridine kinase; Provisional

Probab=98.49  E-value=1.5e-06  Score=74.66  Aligned_cols=117  Identities=19%  Similarity=0.176  Sum_probs=63.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhC-------CCeechhHHHHHHccCCChHHHHHHHHHHCC--CCCCHHHHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLE-------VPHISMGSLVRQELSPRSALYKQIANAVNEG--KLVPEDVIFALLSKR  134 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g-------~~~is~~dllr~~~~~~~~~g~~i~~~l~~g--~~~~~~~~~~ll~~~  134 (273)
                      +.|.|.|+|||||||+|+.|++++.       +..++.|+..+....  -+..+  ....+.+  .....+...+.+ ..
T Consensus         4 ~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~--~~~~~--~~~~~~d~p~a~D~~~l~~~l-~~   78 (210)
T PTZ00301          4 TVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSN--IPESE--RAYTNYDHPKSLEHDLLTTHL-RE   78 (210)
T ss_pred             EEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCccc--CCHHH--hcCCCCCChhhhCHHHHHHHH-HH
Confidence            6788999999999999999988762       336677776643210  00000  0000001  001112222222 11


Q ss_pred             HHhc--------------------ccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCc
Q 024067          135 LEEG--------------------YYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA  189 (273)
Q Consensus       135 l~~~--------------------~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~  189 (273)
                      +..+                    ......-+|++|+-- . +-..+.  ...|+.||++++.++++.|...|..
T Consensus        79 L~~g~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~-l-~~~~l~--~l~D~~ifvd~~~d~~~~Rr~~Rd~  149 (210)
T PTZ00301         79 LKSGKTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILL-F-TNAELR--NEMDCLIFVDTPLDICLIRRAKRDM  149 (210)
T ss_pred             HHcCCcccCCCcccccCCcCCceEEeCCCcEEEEechhh-h-CCHHHH--HhCCEEEEEeCChhHHHHHHHhhhH
Confidence            2111                    011234457788643 1 111121  1467899999999999999988875

>PRK07429 phosphoribulokinase; Provisional

Probab=98.48  E-value=6.3e-07  Score=81.88  Aligned_cols=39  Identities=31%  Similarity=0.426  Sum_probs=33.3

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhC---CCeechhHHH
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSKLLE---VPHISMGSLV   98 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~g---~~~is~~dll   98 (273)
                      ..++++|.|.|++||||||+++.|++.++   +..++.|++.
T Consensus         5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~   46 (327)
T PRK07429          5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH   46 (327)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence            35778999999999999999999999987   5567787764

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=98.42  E-value=1.6e-05  Score=69.10  Aligned_cols=176  Identities=16%  Similarity=0.207  Sum_probs=92.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCC------ChHHH----HHHHHHHCCCCCC------H
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPR------SALYK----QIANAVNEGKLVP------E  124 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~------~~~g~----~i~~~l~~g~~~~------~  124 (273)
                      .+|.+|+|-|+||.||||+|..||.++|..++=..|.+|+.+.+-      ..+.+    .-+.+-......|      |
T Consensus        87 ~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piiaGF~d  166 (299)
T COG2074          87 KRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIAGFED  166 (299)
T ss_pred             CCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhhhHHH
Confidence            357888999999999999999999999998766667777655421      01111    1111111110000      0


Q ss_pred             --HH----HHHHHHHHHHhcccCCcceEEEeCC---CCCHHHHHHHHhhCCCceEEEEcc-CHHHHHHHHhcCCcCCCcc
Q 024067          125 --DV----IFALLSKRLEEGYYRGESGFILDGI---PRTRIQAEILDQIVDVDLVINFKS-IEDQLVKRNLESEAFSPHK  194 (273)
Q Consensus       125 --~~----~~~ll~~~l~~~~~~~~~g~IlDg~---P~~~~qa~~l~~~~~~d~vI~L~~-~~e~l~~Rl~~R~~~~~~~  194 (273)
                        +.    +..++..++.+     +..+|+.|.   |.-... +.+   ..-.+.++|.+ +++....|+-.|.....- 
T Consensus       167 qa~~V~~GI~~VI~RAi~e-----G~~lIIEGvHlVPg~i~~-~~~---~~n~~~~~l~i~dee~Hr~RF~~R~~~t~~-  236 (299)
T COG2074         167 QASAVMVGIEAVIERAIEE-----GEDLIIEGVHLVPGLIKE-EAL---GNNVFMFMLYIADEELHRERFYDRIRYTHA-  236 (299)
T ss_pred             HhHHHHHHHHHHHHHHHhc-----CcceEEEeeeeccccccH-hhh---ccceEEEEEEeCCHHHHHHHHHHHHHHHhc-
Confidence              11    23445555554     467888874   332222 111   12234444444 566677788777532100 


Q ss_pred             cccccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067          195 EFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ  260 (273)
Q Consensus       195 ~~y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~  260 (273)
                            +.|      .+.+.+.+..|+....-+.+--++++ +=.++ +.+.++....|++.+..+
T Consensus       237 ------~rp------~~Ryl~yf~EiR~I~Dyl~~~Are~g-VPvI~-n~di~etv~~il~~i~~~  288 (299)
T COG2074         237 ------SRP------GGRYLEYFKEIRTIHDYLVERAREHG-VPVIE-NDDIDETVDRILEDIRKR  288 (299)
T ss_pred             ------cCc------hhHHHHHHHHHHHHHHHHHHHHHhcC-CCeec-cccHHHHHHHHHHHHHHH
Confidence                  011      12333444444433333333334455 33455 567888888887777654

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=98.42  E-value=1.4e-06  Score=75.30  Aligned_cols=34  Identities=26%  Similarity=0.260  Sum_probs=28.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhC-------CCeechhHHH
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLLE-------VPHISMGSLV   98 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~g-------~~~is~~dll   98 (273)
                      +|.|.|++||||||+++.|+..+.       +.+|++|+..
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~   41 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL   41 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence            367999999999999999999883       3567777765

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=98.38  E-value=3.5e-06  Score=69.56  Aligned_cols=110  Identities=15%  Similarity=0.123  Sum_probs=62.0

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHh---CC-CeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHH--HHHHH
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSKLL---EV-PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIF--ALLSK  133 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~---g~-~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~--~ll~~  133 (273)
                      +.+|..|-++|.+||||||+|..|.+++   |. .++--||-+|.-+..+-.+.++=          -.+.+.  .-+.+
T Consensus        20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~ed----------R~eniRRvaevAk   89 (197)
T COG0529          20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSRED----------RIENIRRVAEVAK   89 (197)
T ss_pred             CCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHH----------HHHHHHHHHHHHH
Confidence            4567888899999999999999999988   32 33334677776554321110000          001111  12222


Q ss_pred             HHHhcccCCcceEEEeCCCCCHHHHHHH-Hh-hC-CCceEEEEccCHHHHHHHH
Q 024067          134 RLEEGYYRGESGFILDGIPRTRIQAEIL-DQ-IV-DVDLVINFKSIEDQLVKRN  184 (273)
Q Consensus       134 ~l~~~~~~~~~g~IlDg~P~~~~qa~~l-~~-~~-~~d~vI~L~~~~e~l~~Rl  184 (273)
                      .+..     ...++|..|-.-......+ .. +. ...+-||++||.+++.+|=
T Consensus        90 ll~d-----aG~iviva~ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RD  138 (197)
T COG0529          90 LLAD-----AGLIVIVAFISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRD  138 (197)
T ss_pred             HHHH-----CCeEEEEEeeCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcC
Confidence            2332     2445666654433322222 11 12 2457899999999998873

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=98.34  E-value=4e-05  Score=62.49  Aligned_cols=67  Identities=16%  Similarity=0.207  Sum_probs=51.8

Q ss_pred             eEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHH-hcCcEEEEeCCCChh
Q 024067          169 LVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYS-KQRKLLNFQVAAAPG  247 (273)
Q Consensus       169 ~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~-~~~~~~~id~~~s~~  247 (273)
                      ++|++.++++++.+|+.+|+.                  ++.|.+..|+..-.        .|. ..+.+++||.++.++
T Consensus       117 lvv~ita~p~VLaqRL~~RGR------------------Es~eeI~aRL~R~a--------~~~~~~~dv~~idNsG~l~  170 (192)
T COG3709         117 LVVCITASPEVLAQRLAERGR------------------ESREEILARLARAA--------RYTAGPGDVTTIDNSGELE  170 (192)
T ss_pred             eeEEEecCHHHHHHHHHHhcc------------------CCHHHHHHHHHhhc--------ccccCCCCeEEEcCCCcHH
Confidence            699999999999999999974                  34567777775322        122 234689999999999


Q ss_pred             HHHHHHHHHHHhcC
Q 024067          248 ETWQGLLSALHLQH  261 (273)
Q Consensus       248 ev~~~I~~~l~~~~  261 (273)
                      ..-+.+...|....
T Consensus       171 ~ag~~ll~~l~~~~  184 (192)
T COG3709         171 DAGERLLALLHQDS  184 (192)
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999999888554

>PHA00729 NTP-binding motif containing protein

Probab=98.33  E-value=4e-06  Score=72.42  Aligned_cols=111  Identities=14%  Similarity=0.039  Sum_probs=62.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCC--CeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccc
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEV--PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY  140 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~--~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~  140 (273)
                      ...|+|+|+||+||||+|..|+++++.  ..+..++..+..  ..            ....++.+.....+.......  
T Consensus        17 f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~--~~------------~~~fid~~~Ll~~L~~a~~~~--   80 (226)
T PHA00729         17 FVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQY--VQ------------NSYFFELPDALEKIQDAIDND--   80 (226)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhc--CC------------cEEEEEHHHHHHHHHHHHhcC--
Confidence            357999999999999999999998752  222222111110  00            011122233334443333221  


Q ss_pred             CCcceEEEeCCCCCHH----HHH------HHHhh--CCCceEEEEccCHHHHHHHHhcCCc
Q 024067          141 RGESGFILDGIPRTRI----QAE------ILDQI--VDVDLVINFKSIEDQLVKRNLESEA  189 (273)
Q Consensus       141 ~~~~g~IlDg~P~~~~----qa~------~l~~~--~~~d~vI~L~~~~e~l~~Rl~~R~~  189 (273)
                      ....-+|||++.--..    ..+      .+...  ..+++++++.++++.+.+++..|+.
T Consensus        81 ~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~Rg~  141 (226)
T PHA00729         81 YRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREKGW  141 (226)
T ss_pred             CCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhCCC
Confidence            1112369998432211    100      11111  2478899999999999999999874

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=98.33  E-value=1e-06  Score=73.67  Aligned_cols=36  Identities=25%  Similarity=0.246  Sum_probs=31.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh-----CCCeechhHHHHH
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQ  100 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~~dllr~  100 (273)
                      .|.|.|+|||||||+|+.|++.+     ++.+|++|++...
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~   41 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVP   41 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccC
Confidence            37899999999999999999997     4678999998863

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>COG1660 Predicted P-loop-containing kinase [General function prediction only]

Probab=98.29  E-value=7.4e-05  Score=65.24  Aligned_cols=149  Identities=16%  Similarity=0.099  Sum_probs=84.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~  143 (273)
                      ..|+|+|.+|||||+..+.| +.+|+-+++-                           +|.+++-+++.-..........
T Consensus         2 ~lvIVTGlSGAGKsvAl~~l-EDlGyycvDN---------------------------LPp~Llp~~~~~~~~~~~~~~k   53 (286)
T COG1660           2 RLVIVTGLSGAGKSVALRVL-EDLGYYCVDN---------------------------LPPQLLPKLADLMLTLESRITK   53 (286)
T ss_pred             cEEEEecCCCCcHHHHHHHH-HhcCeeeecC---------------------------CCHHHHHHHHHHHhhcccCCce
Confidence            46889999999999988777 6678777642                           2333443443311111100123


Q ss_pred             ceEEEeC----CCCCHHH-HHHHHhhCCCc-eEEEEccCHHHHHHHHhc-CCcCCCcccccccCCCCCCCCCcHHHHHHH
Q 024067          144 SGFILDG----IPRTRIQ-AEILDQIVDVD-LVINFKSIEDQLVKRNLE-SEAFSPHKEFLRLGGARFSAADAASAWKEK  216 (273)
Q Consensus       144 ~g~IlDg----~P~~~~q-a~~l~~~~~~d-~vI~L~~~~e~l~~Rl~~-R~~~~~~~~~y~~~~~~~~~~d~~e~~~~r  216 (273)
                      -.+++|-    |+....+ ...|.+...++ .++||+++++++++|... |+.+|.            ..++.   +.+-
T Consensus        54 vAv~iDiRs~~~~~~l~~~l~~l~~~~~~~~~iLFLeA~~~~Lv~RY~etRR~HPL------------~~~~~---l~~~  118 (286)
T COG1660          54 VAVVIDVRSREFFGDLEEVLDELKDNGDIDPRVLFLEADDETLVRRYSETRRSHPL------------SEDGL---LLEA  118 (286)
T ss_pred             EEEEEecccchhHHHHHHHHHHHHhcCCCCceEEEEECchhHHHHHHhhhhhcCCC------------CccCc---HHHH
Confidence            3467773    2222222 12232222222 599999999999999954 444442            22221   3333


Q ss_pred             HHHHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHHHHhc
Q 024067          217 FRIYAEQGKSLEDYYSKQRKLLNFQVA-AAPGETWQGLLSALHLQ  260 (273)
Q Consensus       217 l~~y~~~~~~l~~~y~~~~~~~~id~~-~s~~ev~~~I~~~l~~~  260 (273)
                      +..-++...|+.+.-+     ..||++ .++.++-+.|...+..+
T Consensus       119 I~~ERelL~pLk~~A~-----~vIDTs~ls~~~Lr~~i~~~f~~~  158 (286)
T COG1660         119 IAKERELLAPLREIAD-----LVIDTSELSVHELRERIRTRFLGK  158 (286)
T ss_pred             HHHHHHHHHHHHHHhh-----hEeecccCCHHHHHHHHHHHHccC
Confidence            4444444555544221     457776 48999999999888753

>PRK05439 pantothenate kinase; Provisional

Probab=98.28  E-value=3.4e-06  Score=76.37  Aligned_cols=39  Identities=21%  Similarity=0.190  Sum_probs=32.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC-------CCeechhHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-------VPHISMGSLVR   99 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g-------~~~is~~dllr   99 (273)
                      .++..|.|.|+|||||||+|+.|++.++       +..|++|+++.
T Consensus        84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~  129 (311)
T PRK05439         84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLY  129 (311)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccccc
Confidence            4678899999999999999999998663       45788888774

>PLN02348 phosphoribulokinase

Probab=98.23  E-value=2.9e-06  Score=78.69  Aligned_cols=28  Identities=21%  Similarity=0.296  Sum_probs=25.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      .++..|.|.|++||||||+++.|++.++
T Consensus        47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg   74 (395)
T PLN02348         47 DGTVVIGLAADSGCGKSTFMRRLTSVFG   74 (395)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4678899999999999999999999996

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=98.22  E-value=2.7e-06  Score=71.91  Aligned_cols=24  Identities=25%  Similarity=0.365  Sum_probs=22.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhC
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      +|.|.|++||||||+|+.|+..++
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~   24 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILN   24 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999999996

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.17  E-value=6.8e-06  Score=73.35  Aligned_cols=34  Identities=24%  Similarity=0.334  Sum_probs=28.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh---CCCeechhHHH
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLV   98 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~---g~~~is~~dll   98 (273)
                      .|.|+|++||||||+++.|+..+   +...|+.|++.
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~   37 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYH   37 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence            36799999999999999999887   45678887764

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PRK15453 phosphoribulokinase; Provisional

Probab=98.13  E-value=1.3e-05  Score=71.36  Aligned_cols=39  Identities=13%  Similarity=0.199  Sum_probs=32.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC-----CCeechhHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVR   99 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g-----~~~is~~dllr   99 (273)
                      .+++.|.|+|+|||||||+++.|++.++     ..+|+.|++.+
T Consensus         3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~   46 (290)
T PRK15453          3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR   46 (290)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence            3678999999999999999999999874     45677776664

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=98.12  E-value=1.9e-06  Score=71.50  Aligned_cols=35  Identities=17%  Similarity=0.180  Sum_probs=29.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhC--CCeechhHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLE--VPHISMGSLV   98 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g--~~~is~~dll   98 (273)
                      ++|+|+|+|||||||+|..|+..++  +.||+++...
T Consensus         2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~   38 (170)
T PRK05800          2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPF   38 (170)
T ss_pred             CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCC
Confidence            5789999999999999999999987  5577765543

>PRK09169 hypothetical protein; Validated

Probab=98.06  E-value=3e-05  Score=83.70  Aligned_cols=108  Identities=12%  Similarity=0.022  Sum_probs=78.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG  142 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~  142 (273)
                      ...|+|+|.+|+||||+++.|++++++.++++|..+.+      ..++.|.+++...+ ++.+.....+.+.+.      
T Consensus      2110 ~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIek------s~GrkI~rIFa~eG-~FRe~Eaa~V~Dllr------ 2176 (2316)
T PRK09169       2110 AQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAK------KIGKKIARIQALRG-LSPEQAAARVRDALR------ 2176 (2316)
T ss_pred             hcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHH------HhCCCHHHHHHhcC-chHHHHHHHHHHHhc------
Confidence            45799999999999999999999999999999988876      34566777765443 777777777777663      


Q ss_pred             cceEEEe--CC-CCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcC
Q 024067          143 ESGFILD--GI-PRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLES  187 (273)
Q Consensus       143 ~~g~IlD--g~-P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R  187 (273)
                       ...||.  |+ +........|.   .-.++|++..+.+++.+|+...
T Consensus      2177 -~~vVLSTGGGav~~~enr~~L~---~~GlvV~L~an~~tl~~Rty~g 2220 (2316)
T PRK09169       2177 -WEVVLPAEGFGAAVEQARQALG---AKGLRVMRINNGFAAPDTTYAG 2220 (2316)
T ss_pred             -CCeEEeCCCCcccCHHHHHHHH---HCCEEEEEECCHHHHHHHhccC
Confidence             123332  22 22233333343   3457999999999999998644

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.04  E-value=1.6e-05  Score=71.49  Aligned_cols=39  Identities=23%  Similarity=0.226  Sum_probs=30.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC-------CCeechhHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-------VPHISMGSLVR   99 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g-------~~~is~~dllr   99 (273)
                      ..+.+|.|.|++||||||+++.|...+.       +..+++|+...
T Consensus        60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~  105 (290)
T TIGR00554        60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLH  105 (290)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccc
Confidence            4578899999999999999998877663       44577776553

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PRK06761 hypothetical protein; Provisional

Probab=98.02  E-value=0.00018  Score=64.40  Aligned_cols=33  Identities=24%  Similarity=0.286  Sum_probs=28.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechh
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG   95 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~   95 (273)
                      ++.|+|+|+|||||||+++.|+++++...++++
T Consensus         3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~   35 (282)
T PRK06761          3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVE   35 (282)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEE
Confidence            457999999999999999999999986655554

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=98.00  E-value=4.7e-06  Score=64.94  Aligned_cols=29  Identities=34%  Similarity=0.571  Sum_probs=25.6

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           66 WVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        66 Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      |+|.||||+||||+++.|++.++++++.+
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~~~~~i   29 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGFPFIEI   29 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTSEEEEE
T ss_pred             CEEECcCCCCeeHHHHHHHhhcccccccc
Confidence            68999999999999999999999766443

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A

Probab=97.93  E-value=9.9e-05  Score=61.65  Aligned_cols=115  Identities=17%  Similarity=0.143  Sum_probs=59.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChH--------HHHHH--HH---HHCC-------CCCCH
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSAL--------YKQIA--NA---VNEG-------KLVPE  124 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~--------g~~i~--~~---l~~g-------~~~~~  124 (273)
                      +|.|.+..|||++++|++||+++|+++++- +++.+.... ..+        .+...  ..   +..+       ....+
T Consensus         1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~-~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (179)
T PF13189_consen    1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKE-SGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDD   78 (179)
T ss_dssp             EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT-------------SS-HHH--HH---HHS-------------
T ss_pred             CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHH-ccCCHHHHHHHhccccCcchhhhhhccccccccccccHH
Confidence            478999999999999999999999999997 777654332 111        11111  11   1111       11223


Q ss_pred             HHHHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCC
Q 024067          125 DVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE  188 (273)
Q Consensus       125 ~~~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~  188 (273)
                      +.+.....+.+...  ....++|+.|.-     +..+-.-.+..+-|+|.+|.+..++|+..+.
T Consensus        79 ~~~~~~~~~~i~~l--a~~~~~Vi~GR~-----a~~il~~~~~~l~V~i~A~~~~Rv~ri~~~~  135 (179)
T PF13189_consen   79 DKIFRAQSEIIREL--AAKGNCVIVGRC-----ANYILRDIPNVLHVFIYAPLEFRVERIMERE  135 (179)
T ss_dssp             -HHHHHHHHHHHHH--HH---EEEESTT-----HHHHTTT-TTEEEEEEEE-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--hccCCEEEEecC-----HhhhhCCCCCeEEEEEECCHHHHHHHHHHHc
Confidence            33444333333332  113567777642     1111111123479999999999999998874

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=97.93  E-value=4.3e-05  Score=76.35  Aligned_cols=32  Identities=16%  Similarity=0.314  Sum_probs=27.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      ...|+++|.||+||||+++.|++.+++..+++
T Consensus       215 ~~~~~~vglp~~GKStia~~L~~~l~~~~~~~  246 (664)
T PTZ00322        215 SLIVIMVGLPGRGKTYVARQIQRYFQWNGLQS  246 (664)
T ss_pred             ceeEEecccCCCChhHHHHHHHHHHHhcCCCc
Confidence            35788999999999999999999996665544

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.89  E-value=0.00012  Score=68.68  Aligned_cols=92  Identities=16%  Similarity=0.199  Sum_probs=53.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh----C--CCeechhHHHHHHccCCChHHHHHHHHHHCCCC-C-CHHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL----E--VPHISMGSLVRQELSPRSALYKQIANAVNEGKL-V-PEDVIFALLSK  133 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~----g--~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~-~-~~~~~~~ll~~  133 (273)
                      ++..|+|+||+||||||++..||..+    |  +..++. |..|..      ...+++.+.+.... + .... ...+.+
T Consensus       222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~-Dt~R~a------A~eQLk~yAe~lgvp~~~~~~-~~~l~~  293 (432)
T PRK12724        222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTT-DNYRIA------AIEQLKRYADTMGMPFYPVKD-IKKFKE  293 (432)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecc-cchhhh------HHHHHHHHHHhcCCCeeehHH-HHHHHH
Confidence            46678899999999999999999866    2  333444 444431      11234444333222 1 1111 223333


Q ss_pred             HHHhcccCCcceEEEe--CCC-CCHHHHHHHHhh
Q 024067          134 RLEEGYYRGESGFILD--GIP-RTRIQAEILDQI  164 (273)
Q Consensus       134 ~l~~~~~~~~~g~IlD--g~P-~~~~qa~~l~~~  164 (273)
                      .+..   .+...+|||  |++ ++..|.+.|..+
T Consensus       294 ~l~~---~~~D~VLIDTaGr~~rd~~~l~eL~~~  324 (432)
T PRK12724        294 TLAR---DGSELILIDTAGYSHRNLEQLERMQSF  324 (432)
T ss_pred             HHHh---CCCCEEEEeCCCCCccCHHHHHHHHHH
Confidence            4432   234679999  664 677888777654

>PLN02165 adenylate isopentenyltransferase

Probab=97.87  E-value=1.5e-05  Score=72.57  Aligned_cols=38  Identities=16%  Similarity=0.197  Sum_probs=34.5

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHH
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSL   97 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dl   97 (273)
                      +.++..|+|+||+||||||++..||+.++..+|++|.+
T Consensus        40 ~~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~   77 (334)
T PLN02165         40 NCKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM   77 (334)
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence            34567899999999999999999999999999999876

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.83  E-value=3.7e-05  Score=61.43  Aligned_cols=23  Identities=30%  Similarity=0.387  Sum_probs=21.3

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhC
Q 024067           66 WVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        66 Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      |+|+||+||||||+++.|++.+.
T Consensus         2 i~i~GpsGsGKstl~~~L~~~~~   24 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEEFD   24 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhcCC
Confidence            78999999999999999999874

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PLN02318 phosphoribulokinase/uridine kinase

Probab=97.82  E-value=0.00015  Score=70.54  Aligned_cols=37  Identities=19%  Similarity=0.314  Sum_probs=31.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh-CCCeechhHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLV   98 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~-g~~~is~~dll   98 (273)
                      .+..|.|.||+||||||+++.|+..+ +...|++|+..
T Consensus        64 ~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~  101 (656)
T PLN02318         64 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYN  101 (656)
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEccee
Confidence            46788899999999999999999988 45678887753

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=97.82  E-value=1.9e-05  Score=71.51  Aligned_cols=36  Identities=28%  Similarity=0.260  Sum_probs=32.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSL   97 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dl   97 (273)
                      +++.|+|+||+||||||+|..|+++++..+||.|.+
T Consensus         3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~   38 (307)
T PRK00091          3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSM   38 (307)
T ss_pred             CceEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence            457899999999999999999999999999998774

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.80  E-value=6.3e-05  Score=72.65  Aligned_cols=122  Identities=22%  Similarity=0.262  Sum_probs=71.9

Q ss_pred             CCCCCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeech--hHHHHHHccCCChHHHHHHHHHHCCCC-------------
Q 024067           57 GSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVRQELSPRSALYKQIANAVNEGKL-------------  121 (273)
Q Consensus        57 ~~~~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~--~dllr~~~~~~~~~g~~i~~~l~~g~~-------------  121 (273)
                      |-.|.+|  |+|.||||+|||.+|+.||.++|++++++  -+++. -+.+.+  -+.|++.+.+...             
T Consensus       219 Gv~PprG--vLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivS-GvSGES--EkkiRelF~~A~~~aPcivFiDeIDA  293 (802)
T KOG0733|consen  219 GVRPPRG--VLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVS-GVSGES--EKKIRELFDQAKSNAPCIVFIDEIDA  293 (802)
T ss_pred             CCCCCCc--eeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhc-ccCccc--HHHHHHHHHHHhccCCeEEEeecccc
Confidence            3444444  67899999999999999999999999874  22332 122222  2455555543211             


Q ss_pred             -------CCHHHHHHHHHHHHHhccc-----CCcceEEEeC---CCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHh
Q 024067          122 -------VPEDVIFALLSKRLEEGYY-----RGESGFILDG---IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNL  185 (273)
Q Consensus       122 -------~~~~~~~~ll~~~l~~~~~-----~~~~g~IlDg---~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~  185 (273)
                             ...++..+++.+.+...+-     ..+.++++=|   -|....  -.|...+.+|.=|.|.+|.++..++++
T Consensus       294 I~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslD--paLRRaGRFdrEI~l~vP~e~aR~~IL  370 (802)
T KOG0733|consen  294 ITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLD--PALRRAGRFDREICLGVPSETAREEIL  370 (802)
T ss_pred             cccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccC--HHHhccccccceeeecCCchHHHHHHH
Confidence                   1123334444444432211     1235565544   233332  235556789999999999988877764

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=97.78  E-value=0.00029  Score=62.47  Aligned_cols=30  Identities=23%  Similarity=0.308  Sum_probs=26.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCee
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHI   92 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~i   92 (273)
                      +..++|.|+||+|||++|+.|++.+|.+++
T Consensus        21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~   50 (262)
T TIGR02640        21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVM   50 (262)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence            456779999999999999999999988766

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=97.78  E-value=0.0002  Score=63.31  Aligned_cols=27  Identities=30%  Similarity=0.525  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ..+..++|.||||+||||+|+.+++.+
T Consensus        40 ~~~~~vll~GppGtGKTtlA~~ia~~l   66 (261)
T TIGR02881        40 KQVLHMIFKGNPGTGKTTVARILGKLF   66 (261)
T ss_pred             CCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999999875

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PLN02840 tRNA dimethylallyltransferase

Probab=97.76  E-value=2.8e-05  Score=72.99  Aligned_cols=37  Identities=30%  Similarity=0.261  Sum_probs=32.7

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhH
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS   96 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~d   96 (273)
                      ..+++.|+|.||+||||||++..|+++++..+|+.|.
T Consensus        18 ~~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds   54 (421)
T PLN02840         18 TKKEKVIVISGPTGAGKSRLALELAKRLNGEIISADS   54 (421)
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence            3456789999999999999999999999988888765

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.75  E-value=1.2e-05  Score=65.50  Aligned_cols=42  Identities=19%  Similarity=0.370  Sum_probs=33.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHcc
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS  103 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~  103 (273)
                      ..++|+|+|+||+||||++.+|++.+.-.-+.++.++-.++.
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR   45 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR   45 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee
Confidence            468999999999999999999999886554555555555554

>PHA03136 thymidine kinase; Provisional

Probab=97.73  E-value=0.0019  Score=59.70  Aligned_cols=24  Identities=8%  Similarity=-0.020  Sum_probs=22.2

Q ss_pred             CCceEEEEccCHHHHHHHHhcCCc
Q 024067          166 DVDLVINFKSIEDQLVKRNLESEA  189 (273)
Q Consensus       166 ~~d~vI~L~~~~e~l~~Rl~~R~~  189 (273)
                      .||.+|+|+++.+++.+|+.+|..
T Consensus       191 ~pD~IIyL~l~~e~~~~RI~kRgR  214 (378)
T PHA03136        191 HGGNIVIMDLDECEHAERIIARGR  214 (378)
T ss_pred             CCCEEEEEeCCHHHHHHHHHHcCC
Confidence            589999999999999999999874

>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]

Probab=97.69  E-value=0.0012  Score=55.79  Aligned_cols=122  Identities=14%  Similarity=0.125  Sum_probs=73.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh-CCCeechhHHHHHHcc----CC-------------ChHHHHHHHHHHCCCCCCH-
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQELS----PR-------------SALYKQIANAVNEGKLVPE-  124 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~-g~~~is~~dllr~~~~----~~-------------~~~g~~i~~~l~~g~~~~~-  124 (273)
                      .+|.|.|..-|||||+|+.|...| |+..|+-||....+..    .+             ..+.+.|+..+.+....|+ 
T Consensus         5 ~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~~~a   84 (225)
T KOG3308|consen    5 LIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNAPEA   84 (225)
T ss_pred             EEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccccchH
Confidence            456689999999999999999999 6788888887643211    11             0123445555655444433 


Q ss_pred             -HHHH-H-HHHHHHH--hcccCCcceEEEeCCCCC--HHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCC
Q 024067          125 -DVIF-A-LLSKRLE--EGYYRGESGFILDGIPRT--RIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFS  191 (273)
Q Consensus       125 -~~~~-~-ll~~~l~--~~~~~~~~g~IlDg~P~~--~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~  191 (273)
                       +... . .+.....  +.......-+|+|||--.  ..|..      ..|..|.+..+.+++.+|-..|...+
T Consensus        85 r~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~y~p~~~------~~d~~im~~~~y~~~krRr~~Rt~y~  152 (225)
T KOG3308|consen   85 REHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYNYKPQVD------LFDRIIMLTLDYETCKRRREARTYYP  152 (225)
T ss_pred             hhhhhhhhHHHHHhhhcCcccccCcEEEEecceEEecchhhh------hhhhheeeeccHHHHHHhhcccccCC
Confidence             1111 1 1111111  111123455899998432  12222      45689999999999999998887643

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.68  E-value=2.3e-05  Score=64.10  Aligned_cols=27  Identities=22%  Similarity=0.405  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCee
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLLEVPHI   92 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~g~~~i   92 (273)
                      +|+|+|+||+||||+++.|++. |++++
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~-g~~~v   27 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR-GYPVV   27 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence            5899999999999999999999 98877

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=97.67  E-value=0.00017  Score=63.86  Aligned_cols=35  Identities=11%  Similarity=0.190  Sum_probs=29.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhC-----CCeechhHHHH
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVR   99 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~g-----~~~is~~dllr   99 (273)
                      .|.|+|++||||||+++.|++.++     +.+|+.|+..+
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr   40 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR   40 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence            377999999999999999998874     45788877775

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.63  E-value=0.0021  Score=52.51  Aligned_cols=150  Identities=13%  Similarity=0.098  Sum_probs=77.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh--CCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccc
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLL--EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY  140 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~--g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~  140 (273)
                      +...++-||.||||||+-..+--.+  ++.+|+.|.+.-+ +.+..+....|+..         ......+...+..   
T Consensus         2 ~~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~-i~p~~p~~~~i~A~---------r~ai~~i~~~I~~---   68 (187)
T COG4185           2 KRLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQ-ISPDNPTSAAIQAA---------RVAIDRIARLIDL---   68 (187)
T ss_pred             ceEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhh-cCCCCchHHHHHHH---------HHHHHHHHHHHHc---
Confidence            4577889999999999876654444  5789999877654 33333322222111         1222333333333   


Q ss_pred             CCcceEEEeCCCCCHHHHHHHHhhCCCceEE---EEcc-CHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHH
Q 024067          141 RGESGFILDGIPRTRIQAEILDQIVDVDLVI---NFKS-IEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEK  216 (273)
Q Consensus       141 ~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI---~L~~-~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~r  216 (273)
                        +.+|.....-....-.+.+.......+.|   ++-+ +.|..++|+..|-...  |.           +=.++.++.|
T Consensus        69 --~~~F~~ETtLS~~s~~~~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~G--GH-----------~IpED~Ir~R  133 (187)
T COG4185          69 --GRPFIAETTLSGPSILELIKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKG--GH-----------DIPEDKIRRR  133 (187)
T ss_pred             --CCCcceEEeeccchHHHHHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcC--CC-----------CCcHHHHHHH
Confidence              45666654434333344443222222222   2222 4567888887774321  10           1124577766


Q ss_pred             HHHHHHhhHHHHHHHHhcCcEEEEeCC
Q 024067          217 FRIYAEQGKSLEDYYSKQRKLLNFQVA  243 (273)
Q Consensus       217 l~~y~~~~~~l~~~y~~~~~~~~id~~  243 (273)
                      +..   ..+.+..|+.-.+.+..-|.+
T Consensus       134 Y~r---sle~l~~~l~l~dr~~IydNS  157 (187)
T COG4185         134 YRR---SLELLAQALTLADRATIYDNS  157 (187)
T ss_pred             HHH---HHHHHHHHHhhcceeEEecCC
Confidence            554   344455555554544444543

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.62  E-value=4.6e-05  Score=58.84  Aligned_cols=28  Identities=32%  Similarity=0.546  Sum_probs=24.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~   90 (273)
                      +..++|+|||||||||+++.|+..++..
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence            4578999999999999999999998654

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PLN02748 tRNA dimethylallyltransferase

Probab=97.62  E-value=7e-05  Score=71.38  Aligned_cols=36  Identities=25%  Similarity=0.276  Sum_probs=32.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS   96 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~d   96 (273)
                      .++..|+|+||+||||||++..||++++..+|+.|.
T Consensus        20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~Ds   55 (468)
T PLN02748         20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADS   55 (468)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCch
Confidence            356789999999999999999999999999999874

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=97.61  E-value=0.00025  Score=55.28  Aligned_cols=84  Identities=18%  Similarity=0.172  Sum_probs=45.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh--------CCCeechhHHHHHHccCCChHHHHHHHHHHCCCCC--CHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL--------EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLV--PEDVIFALL  131 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~--------g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~--~~~~~~~ll  131 (273)
                      +...++|.|+||+|||++++.+++.+        +...+.+. +- ... ....+...+.+.+......  +.+.....+
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~-~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~   79 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN-CP-SSR-TPRDFAQEILEALGLPLKSRQTSDELRSLL   79 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE-HH-HHS-SHHHHHHHHHHHHT-SSSSTS-HHHHHHHH
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE-eC-CCC-CHHHHHHHHHHHhCccccccCCHHHHHHHH
Confidence            34578899999999999999999987        43333221 11 111 1123445555555433222  334444677


Q ss_pred             HHHHHhcccCCcceEEEeCC
Q 024067          132 SKRLEEGYYRGESGFILDGI  151 (273)
Q Consensus       132 ~~~l~~~~~~~~~g~IlDg~  151 (273)
                      .+.+....   ..-+|||.+
T Consensus        80 ~~~l~~~~---~~~lviDe~   96 (131)
T PF13401_consen   80 IDALDRRR---VVLLVIDEA   96 (131)
T ss_dssp             HHHHHHCT---EEEEEEETT
T ss_pred             HHHHHhcC---CeEEEEeCh
Confidence            77777641   245788875

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=97.59  E-value=5.5e-05  Score=70.86  Aligned_cols=35  Identities=31%  Similarity=0.451  Sum_probs=31.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS   96 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~d   96 (273)
                      .|..|+|+||||+||||+|+.||+.++++++.++.
T Consensus        46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vda   80 (441)
T TIGR00390        46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA   80 (441)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeec
Confidence            45689999999999999999999999999888763

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>CHL00181 cbbX CbbX; Provisional

Probab=97.58  E-value=0.00028  Score=63.45  Aligned_cols=28  Identities=25%  Similarity=0.491  Sum_probs=24.6

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      +..+..++|.||||+||||+|+.+++.+
T Consensus        56 ~~~~~~ill~G~pGtGKT~lAr~la~~~   83 (287)
T CHL00181         56 SNPGLHMSFTGSPGTGKTTVALKMADIL   83 (287)
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            3457789999999999999999999876

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=97.53  E-value=8.6e-05  Score=64.00  Aligned_cols=32  Identities=22%  Similarity=0.231  Sum_probs=24.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS   93 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is   93 (273)
                      ....+++.||||.||||+|..||++++..+..
T Consensus        49 ~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~   80 (233)
T PF05496_consen   49 ALDHMLFYGPPGLGKTTLARIIANELGVNFKI   80 (233)
T ss_dssp             ---EEEEESSTTSSHHHHHHHHHHHCT--EEE
T ss_pred             CcceEEEECCCccchhHHHHHHHhccCCCeEe
Confidence            35688999999999999999999999976643

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=97.53  E-value=6.9e-05  Score=67.19  Aligned_cols=32  Identities=31%  Similarity=0.317  Sum_probs=29.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCeechhH
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGS   96 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~d   96 (273)
                      .|+|+||+|||||+++..|++.++..+||+|.
T Consensus         1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds   32 (287)
T TIGR00174         1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDS   32 (287)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhCCCcEEEech
Confidence            37899999999999999999999999999876

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=97.51  E-value=8.4e-05  Score=69.69  Aligned_cols=35  Identities=31%  Similarity=0.451  Sum_probs=31.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS   96 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~d   96 (273)
                      .+..|+|+||||+||||+|+.|++.++++++.++-
T Consensus        49 ~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~   83 (443)
T PRK05201         49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA   83 (443)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence            35789999999999999999999999998887754

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=97.51  E-value=0.00012  Score=64.61  Aligned_cols=28  Identities=29%  Similarity=0.237  Sum_probs=25.4

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ...+.+|.|.|+||+||||+|+.|++.+
T Consensus        79 ~~~pfIIgiaGsvavGKST~ar~L~~ll  106 (283)
T COG1072          79 QQRPFIIGIAGSVAVGKSTTARILQALL  106 (283)
T ss_pred             CCCCEEEEeccCccccHHHHHHHHHHHH
Confidence            4568899999999999999999999877

>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional

Probab=97.50  E-value=0.00011  Score=63.34  Aligned_cols=39  Identities=13%  Similarity=0.111  Sum_probs=32.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCe-echhHHHHHHcc
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPH-ISMGSLVRQELS  103 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~-is~~dllr~~~~  103 (273)
                      ++|.|+|.|||||||+++.+.+. |.++ +++++.++..+.
T Consensus         1 miI~i~G~~gsGKstva~~~~~~-g~~~~~~~~d~ik~~l~   40 (227)
T PHA02575          1 MLIAISGKKRSGKDTVADFIIEN-YNAVKYQLADPIKEILA   40 (227)
T ss_pred             CEEEEeCCCCCCHHHHHHHHHhc-CCcEEEehhHHHHHHHH
Confidence            47899999999999999999766 5555 999999987553

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.50  E-value=0.0014  Score=64.02  Aligned_cols=34  Identities=24%  Similarity=0.312  Sum_probs=29.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      ..|+-|++.||||+||||+|+.||.+-+..++++
T Consensus       466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv  499 (693)
T KOG0730|consen  466 SPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV  499 (693)
T ss_pred             CCCceEEEECCCCcchHHHHHHHhhhhcCCeeec
Confidence            3466789999999999999999999998888775

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.47  E-value=9.3e-05  Score=58.73  Aligned_cols=28  Identities=39%  Similarity=0.602  Sum_probs=25.2

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067           66 WVLIGDPGVKKHVYADNLSKLLEVPHIS   93 (273)
Q Consensus        66 Ivi~G~pGSGKsT~a~~La~~~g~~~is   93 (273)
                      |+|.|+||+|||++++.|++.++.+++.
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~~~~~~~   29 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALLGRPVIR   29 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHTCEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhhcceEE
Confidence            7899999999999999999999876643

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>CHL00195 ycf46 Ycf46; Provisional

Probab=97.47  E-value=0.00099  Score=64.16  Aligned_cols=32  Identities=19%  Similarity=0.333  Sum_probs=28.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      ++-|+|.||||+|||++|+.+|+.++++++.+
T Consensus       259 pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l  290 (489)
T CHL00195        259 PRGLLLVGIQGTGKSLTAKAIANDWQLPLLRL  290 (489)
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            45688999999999999999999999887664

>PRK14974 cell division protein FtsY; Provisional

Probab=97.41  E-value=0.00038  Score=63.89  Aligned_cols=27  Identities=26%  Similarity=0.306  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .++..|+|+|+||+||||++..|+..+
T Consensus       138 ~~~~vi~~~G~~GvGKTTtiakLA~~l  164 (336)
T PRK14974        138 GKPVVIVFVGVNGTGKTTTIAKLAYYL  164 (336)
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            357889999999999999999998776

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=97.41  E-value=0.0018  Score=57.72  Aligned_cols=27  Identities=22%  Similarity=0.286  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .++..|+++|++|+||||.+..||..+
T Consensus        70 ~~~~vi~l~G~~G~GKTTt~akLA~~l   96 (272)
T TIGR00064        70 NKPNVILFVGVNGVGKTTTIAKLANKL   96 (272)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            356788899999999999999999877

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.41  E-value=0.00011  Score=66.11  Aligned_cols=29  Identities=24%  Similarity=0.355  Sum_probs=25.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCe
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPH   91 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~   91 (273)
                      ...|++.||||+||||+|+.||+++.+..
T Consensus       177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~  205 (423)
T KOG0744|consen  177 NRLILLHGPPGTGKTSLCKALAQKLSIRT  205 (423)
T ss_pred             eeEEEEeCCCCCChhHHHHHHHHhheeee
Confidence            45789999999999999999999997653

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.38  E-value=0.0022  Score=52.76  Aligned_cols=31  Identities=29%  Similarity=0.322  Sum_probs=24.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh---C--CCeechh
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLL---E--VPHISMG   95 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~---g--~~~is~~   95 (273)
                      .+++.|+||+||||++..++..+   |  +.+++.|
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D   37 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD   37 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence            47899999999999999999876   3  3456654

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family

Probab=97.35  E-value=0.0079  Score=53.31  Aligned_cols=187  Identities=13%  Similarity=0.006  Sum_probs=91.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeech---hHHHHHHccCCChHHHHHHHHHHCCCC--CCHHHHHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM---GSLVRQELSPRSALYKQIANAVNEGKL--VPEDVIFALLSKRLE  136 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~---~dllr~~~~~~~~~g~~i~~~l~~g~~--~~~~~~~~ll~~~l~  136 (273)
                      .+++|+|.|..||||+.+.++|.+.++=.++.+   +.--.++. ....++.--+.+=..|..  ........++.+++.
T Consensus        55 ~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~Pt~eE~-~~p~lWRfw~~lP~~G~i~IF~RSWY~~vl~~rv~  133 (264)
T TIGR03709        55 RSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKAPSAEEL-DHDFLWRIHKALPERGEIGIFNRSHYEDVLVVRVH  133 (264)
T ss_pred             CcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCHHHH-cCchHHHHHHhCCCCCeEEEEcCccccchhhhhhc
Confidence            589999999999999999999999996444432   11100100 000111111110011211  011111222222221


Q ss_pred             hcccCCcceEEEe-CCCCCHHHHHHHHhh----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHH
Q 024067          137 EGYYRGESGFILD-GIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAAS  211 (273)
Q Consensus       137 ~~~~~~~~g~IlD-g~P~~~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e  211 (273)
                      .. +       -+ .+.+...+...++..    +..-+-++|+++.++..+|+..|..++.+.        . +.....-
T Consensus       134 g~-~-------~~~~~~~~~~~I~~FEr~L~~~G~~IiKffLhIsk~eQ~kRl~~r~~~p~k~--------W-k~s~~D~  196 (264)
T TIGR03709       134 GL-I-------PKAIWERRYEDINDFERYLTENGTTILKFFLHISKEEQKKRFLARLDDPTKN--------W-KFSPADL  196 (264)
T ss_pred             CC-C-------CHHHHHHHHHHHHHHHHHHHHCCcEEEEEEEeCCHHHHHHHHHHHhcCCccc--------c-cCCHHHH
Confidence            10 0       00 011111222223222    233367899999999999999887655221        0 1111112


Q ss_pred             HHHHHHHHHHHhhHHHHHHHH-hcCcEEEEeCCCC---hhHHHHHHHHHHHhcCCCCCC
Q 024067          212 AWKEKFRIYAEQGKSLEDYYS-KQRKLLNFQVAAA---PGETWQGLLSALHLQHMNAVS  266 (273)
Q Consensus       212 ~~~~rl~~y~~~~~~l~~~y~-~~~~~~~id~~~s---~~ev~~~I~~~l~~~~~~~~~  266 (273)
                      ...++...|.+..+..+..=. ...-|+.|+++..   --.|.+-|++.|....+.-+.
T Consensus       197 ~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~dk~~a~l~v~~~ll~~l~~~~~~~p~  255 (264)
T TIGR03709       197 KERAYWDDYMEAYEDALTATSTKHAPWYVVPADDKWFRRLAVAEILLDALESLDLKYPE  255 (264)
T ss_pred             HHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            223445555554443332111 1236999998653   445777888888876664333

Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.35  E-value=0.0014  Score=62.27  Aligned_cols=27  Identities=22%  Similarity=0.309  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+|..|+|+|++|+||||++..||..+
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA~~L  119 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLARYF  119 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            357889999999999999999999877

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=97.34  E-value=0.00088  Score=60.12  Aligned_cols=26  Identities=23%  Similarity=0.450  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+..++|.||||+||||+|+.+++.+
T Consensus        57 ~~~~vll~G~pGTGKT~lA~~ia~~l   82 (284)
T TIGR02880        57 PTLHMSFTGNPGTGKTTVALRMAQIL   82 (284)
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHHHH
Confidence            35579999999999999998888876

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>smart00763 AAA_PrkA PrkA AAA domain

Probab=97.32  E-value=0.0002  Score=65.96  Aligned_cols=28  Identities=29%  Similarity=0.271  Sum_probs=25.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEV   89 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~   89 (273)
                      +...++|.|||||||||+++.|++.++.
T Consensus        77 ~r~il~L~GPPGsGKStla~~La~~l~~  104 (361)
T smart00763       77 RKQILYLLGPVGGGKSSLVECLKRGLEE  104 (361)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            4567889999999999999999999965

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family

Probab=97.31  E-value=0.012  Score=51.11  Aligned_cols=179  Identities=9%  Similarity=0.017  Sum_probs=86.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeech---hHHHHHHccCCChHHHHHHHHHHCCCC--CCHHHHHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM---GSLVRQELSPRSALYKQIANAVNEGKL--VPEDVIFALLSKRLE  136 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~---~dllr~~~~~~~~~g~~i~~~l~~g~~--~~~~~~~~ll~~~l~  136 (273)
                      .+++|+|.|..||||+.+.+.|.+.++=.++.+   +.--.++.. ...++.--+.+=..|..  .........+..++.
T Consensus        30 ~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~pt~eE~~-~p~lwRfw~~lP~~G~i~IF~rSwY~~~lv~rv~  108 (230)
T TIGR03707        30 ARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPKPSDRERT-QWYFQRYVQHLPAAGEIVLFDRSWYNRAGVERVM  108 (230)
T ss_pred             CCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCHHHHc-ChHHHHHHHhCCCCCeEEEEeCchhhhHHHHHhc
Confidence            689999999999999999999999996444432   211111100 00011110110011211  111122222222222


Q ss_pred             hcccCCcceEEEe-CCCCCHHHHHHHHhh----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHH
Q 024067          137 EGYYRGESGFILD-GIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAAS  211 (273)
Q Consensus       137 ~~~~~~~~g~IlD-g~P~~~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e  211 (273)
                      .. +       -+ .+.+...+...+++.    +..-+-++|+++.++..+|+..|..++.+.         .+.....-
T Consensus       109 ~~-~-------~~~~~~~~~~~I~~FEr~L~~~G~~IlKfflhIsk~eQ~kRl~~r~~~p~k~---------Wk~~~~D~  171 (230)
T TIGR03707       109 GF-C-------TDEEYEEFLRQVPEFERMLVRDGIHLFKYWLSVSREEQLRRFKARIDDPLKQ---------WKLSPMDL  171 (230)
T ss_pred             CC-C-------CHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCccc---------ccCCHHHH
Confidence            10 0       00 011112222233322    233467899999999999999988655221         01111111


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHhc----CcEEEEeCCCC---hhHHHHHHHHHHHhcC
Q 024067          212 AWKEKFRIYAEQGKSLEDYYSKQ----RKLLNFQVAAA---PGETWQGLLSALHLQH  261 (273)
Q Consensus       212 ~~~~rl~~y~~~~~~l~~~y~~~----~~~~~id~~~s---~~ev~~~I~~~l~~~~  261 (273)
                      .-.++...|.+..+.   .++..    .-|+.|+++..   --.|.+-|++.|....
T Consensus       172 ~~~~~yd~y~~a~e~---~l~~T~t~~APW~iI~a~dk~~a~l~v~~~i~~~l~~~~  225 (230)
T TIGR03707       172 ASLDRWDDYSRAKDE---MFARTDTPEAPWTVVRSDDKKRARLNAIRHILSRLDYEG  225 (230)
T ss_pred             HHHHhHHHHHHHHHH---HHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHhCCCcC
Confidence            223345555544433   33332    35999998653   2335555565555443

Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).

>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.31  E-value=0.0036  Score=53.90  Aligned_cols=168  Identities=15%  Similarity=0.078  Sum_probs=84.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCC-CeechhHHHHHHccC---CCh----HHHHHHHHHHCCCCCCHHHH-------
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEV-PHISMGSLVRQELSP---RSA----LYKQIANAVNEGKLVPEDVI-------  127 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~-~~is~~dllr~~~~~---~~~----~g~~i~~~l~~g~~~~~~~~-------  127 (273)
                      ..-|+|.||.|+||+|+.++|-++++. ..+++..-.+.-...   +..    .-.....++.++..+.....       
T Consensus        37 ~~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~gn~yGt  116 (231)
T KOG0707|consen   37 FKPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSGNKYGT  116 (231)
T ss_pred             CceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhhhhhcccCCc
Confidence            367899999999999999999999974 333332222210000   000    00122222222222111100       


Q ss_pred             -HHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEE--ccCHHHHHHHHhcCCcCCCcccccccCCCCC
Q 024067          128 -FALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINF--KSIEDQLVKRNLESEAFSPHKEFLRLGGARF  204 (273)
Q Consensus       128 -~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L--~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~  204 (273)
                       ...++. +..    .++.+++|-.-....+..    ...+|.++.+  -++...+.+|+..|..               
T Consensus       117 si~av~~-~~~----~gk~~ildId~qg~~~i~----~~~~~~i~i~~~pps~~~~e~rl~~rgt---------------  172 (231)
T KOG0707|consen  117 SIAAVQR-LML----SGKVCILDIDLQGVQPIR----ATSLDAIYIFIKPPSIKILEERLRARGT---------------  172 (231)
T ss_pred             hHHHHHH-HHh----cCCcceeehhhcCceeee----cCCCceEEEEecCCcchhHHHHhhccCc---------------
Confidence             011111 111    235556664322211111    1245544333  3677889999998853               


Q ss_pred             CCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067          205 SAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ  260 (273)
Q Consensus       205 ~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~  260 (273)
                         ++++.+.+|+..-+......++-+..   -+.+.++..+++..+++..++...
T Consensus       173 ---e~~~~l~~r~~sa~~e~~~~~~~g~~---d~~~~ns~~lee~~kel~~~~~~~  222 (231)
T KOG0707|consen  173 ---ETEESLLKRLKSAEEEFEILENSGSF---DLVIVNSDRLEEAYKELEIFISSD  222 (231)
T ss_pred             ---chHHHHHHHHHhhhhhhccccCCccc---cceecCCCchhhhhhhhhhhhhHH
Confidence               34667788887444444433321111   123333477888888888776544

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=97.29  E-value=0.0002  Score=65.20  Aligned_cols=31  Identities=16%  Similarity=0.248  Sum_probs=27.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHIS   93 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is   93 (273)
                      +..|+|.|+||+||||+++.||+.+|++++.
T Consensus        64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~r   94 (327)
T TIGR01650        64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVR   94 (327)
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHHCCCeEE
Confidence            4569999999999999999999999988764

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=97.27  E-value=0.00028  Score=66.31  Aligned_cols=34  Identities=12%  Similarity=0.169  Sum_probs=29.3

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS   93 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is   93 (273)
                      +....+|+|+|++||||||+++.|++.+|...+.
T Consensus       216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~  249 (399)
T PRK08099        216 PFFVRTVAILGGESSGKSTLVNKLANIFNTTSAW  249 (399)
T ss_pred             hCCCcEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence            3446789999999999999999999999987653

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=97.27  E-value=0.002  Score=60.89  Aligned_cols=27  Identities=15%  Similarity=0.176  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .++..|.++|++||||||.+..||..+
T Consensus        98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l  124 (429)
T TIGR01425        98 GKQNVIMFVGLQGSGKTTTCTKLAYYY  124 (429)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            346789999999999999999999877

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.27  E-value=0.00031  Score=54.70  Aligned_cols=31  Identities=26%  Similarity=0.421  Sum_probs=25.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh---CCCeec
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLL---EVPHIS   93 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~---g~~~is   93 (273)
                      +..++|.|+||+||||+++.+++.+   +..++.
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~   52 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLY   52 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEE
Confidence            4578899999999999999999988   554443

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.26  E-value=0.0014  Score=60.59  Aligned_cols=47  Identities=15%  Similarity=0.186  Sum_probs=35.5

Q ss_pred             ccchhcCCCCCCCCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           48 EPMLRLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      -|+.+-+.|......=+-|++.||||+|||-+|+.+|.+-|..++++
T Consensus       230 lPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNV  276 (491)
T KOG0738|consen  230 LPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNV  276 (491)
T ss_pred             hhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEe
Confidence            56665566655542225588999999999999999999999776553

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.26  E-value=0.00025  Score=58.68  Aligned_cols=23  Identities=26%  Similarity=0.429  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      +|+|+|+||+||||+.+++.+.+
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l   23 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEEL   23 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHH
T ss_pred             CEEEECcCCCCHHHHHHHHHHHh
Confidence            58999999999999999999998

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=97.25  E-value=0.0037  Score=55.05  Aligned_cols=32  Identities=25%  Similarity=0.400  Sum_probs=30.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      |+.|++.||||+|||..|+.||.+.+++.+.+
T Consensus       151 PknVLFyGppGTGKTm~Akalane~kvp~l~v  182 (368)
T COG1223         151 PKNVLFYGPPGTGKTMMAKALANEAKVPLLLV  182 (368)
T ss_pred             cceeEEECCCCccHHHHHHHHhcccCCceEEe
Confidence            78899999999999999999999999998865

>PRK12377 putative replication protein; Provisional

Probab=97.25  E-value=0.0047  Score=54.34  Aligned_cols=36  Identities=22%  Similarity=0.412  Sum_probs=29.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh---C--CCeechhHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGSLVR   99 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~---g--~~~is~~dllr   99 (273)
                      ..++|.|+||+|||+++..|+..+   |  +.++++.+++.
T Consensus       102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~  142 (248)
T PRK12377        102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMS  142 (248)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHH
Confidence            468899999999999999999987   2  45677766665

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.25  E-value=0.00036  Score=55.53  Aligned_cols=29  Identities=28%  Similarity=0.312  Sum_probs=26.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~   90 (273)
                      .+..|+|.|+.|+||||+++.+++.+|+.
T Consensus        21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~   49 (133)
T TIGR00150        21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ   49 (133)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence            46689999999999999999999999864

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK09087 hypothetical protein; Validated

Probab=97.24  E-value=0.0021  Score=55.72  Aligned_cols=37  Identities=19%  Similarity=0.063  Sum_probs=31.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVR   99 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr   99 (273)
                      ...++|.|++|||||++++.+++..++.+|+.+++..
T Consensus        44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~   80 (226)
T PRK09087         44 SPVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGS   80 (226)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcch
Confidence            3458999999999999999999999999998864443

>TIGR00959 ffh signal recognition particle protein

Probab=97.23  E-value=0.0043  Score=58.81  Aligned_cols=35  Identities=17%  Similarity=0.218  Sum_probs=27.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh----C--CCeechh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL----E--VPHISMG   95 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~----g--~~~is~~   95 (273)
                      .+|..|+++|++||||||++..||..+    |  +..++.|
T Consensus        97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D  137 (428)
T TIGR00959        97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACD  137 (428)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence            357789999999999999999998774    2  3456664

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]

Probab=97.20  E-value=0.0035  Score=53.92  Aligned_cols=25  Identities=28%  Similarity=0.150  Sum_probs=22.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++.|+|+|-|.|||||.|..|.+.+
T Consensus         1 MpLVvi~G~P~SGKstrA~~L~~~l   25 (281)
T KOG3062|consen    1 MPLVVICGLPCSGKSTRAVELREAL   25 (281)
T ss_pred             CCeEEEeCCCCCCchhHHHHHHHHH
Confidence            4579999999999999999999887

>PRK10867 signal recognition particle protein; Provisional

Probab=97.17  E-value=0.0064  Score=57.73  Aligned_cols=35  Identities=23%  Similarity=0.316  Sum_probs=27.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh----C--CCeechh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL----E--VPHISMG   95 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~----g--~~~is~~   95 (273)
                      .++..|+++|++||||||.+..||..+    |  +..|+.|
T Consensus        98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D  138 (433)
T PRK10867         98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAAD  138 (433)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence            346789999999999999888888755    3  3456664

>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []

Probab=97.17  E-value=0.0088  Score=49.11  Aligned_cols=33  Identities=27%  Similarity=0.270  Sum_probs=29.0

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhC-CCeechhHHH
Q 024067           66 WVLIGDPGVKKHVYADNLSKLLE-VPHISMGSLV   98 (273)
Q Consensus        66 Ivi~G~pGSGKsT~a~~La~~~g-~~~is~~dll   98 (273)
                      |+=++.+|+||||++..|++.|| +-||-.|++-
T Consensus         2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI~   35 (168)
T PF08303_consen    2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNIT   35 (168)
T ss_pred             EeeecCCCcCHHHHHHHHHHHcCCCCccccCCCC
Confidence            44589999999999999999999 9999888763

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=97.16  E-value=0.00045  Score=62.34  Aligned_cols=37  Identities=27%  Similarity=0.209  Sum_probs=33.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLV   98 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dll   98 (273)
                      .+..|+|+||.+||||-+|-.||+++|.++||+|.+-
T Consensus         2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQ   38 (308)
T COG0324           2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQ   38 (308)
T ss_pred             CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhh
Confidence            3568999999999999999999999999999988654

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=97.15  E-value=0.00091  Score=55.43  Aligned_cols=30  Identities=23%  Similarity=0.286  Sum_probs=24.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhC--CCeech
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLLE--VPHISM   94 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~g--~~~is~   94 (273)
                      .++|+|++|||||++|..++...+  +.|+++
T Consensus         1 ~~li~G~~~sGKS~~a~~~~~~~~~~~~y~at   32 (169)
T cd00544           1 IILVTGGARSGKSRFAERLAAELGGPVTYIAT   32 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCeEEEEc
Confidence            368999999999999999998765  344543

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>PF13173 AAA_14: AAA domain

Probab=97.15  E-value=0.00045  Score=54.25  Aligned_cols=37  Identities=24%  Similarity=0.214  Sum_probs=30.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC----CCeechhHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLE----VPHISMGSLVR   99 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g----~~~is~~dllr   99 (273)
                      ...++|.||.|+||||+++.+++.+.    +.+++.++.-.
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~   42 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRD   42 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHH
Confidence            35788999999999999999998875    67777765443

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=97.14  E-value=0.00041  Score=65.03  Aligned_cols=38  Identities=24%  Similarity=0.298  Sum_probs=30.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeec--hhHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS--MGSLVR   99 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is--~~dllr   99 (273)
                      .+..|+|.||||+|||++|+.+++.++.+++.  ..+++.
T Consensus       164 ~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~  203 (389)
T PRK03992        164 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ  203 (389)
T ss_pred             CCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence            35568999999999999999999999876554  444443

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=97.13  E-value=0.00046  Score=63.16  Aligned_cols=30  Identities=10%  Similarity=0.204  Sum_probs=27.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCee
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHI   92 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~i   92 (273)
                      +.+|+|+|+||+||||+++.|+..++.+++
T Consensus       162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v  191 (325)
T TIGR01526       162 VKTVAILGGESTGKSTLVNKLAAVFNTTSA  191 (325)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence            568999999999999999999999998874

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>PF13245 AAA_19: Part of AAA domain

Probab=97.13  E-value=0.0005  Score=49.24  Aligned_cols=25  Identities=32%  Similarity=0.551  Sum_probs=17.9

Q ss_pred             CeEEEEEcCCCCChh-HHHHHHHHHh
Q 024067           63 GVQWVLIGDPGVKKH-VYADNLSKLL   87 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKs-T~a~~La~~~   87 (273)
                      ....+|.|||||||| |++..++..+
T Consensus        10 ~~~~vv~g~pGtGKT~~~~~~i~~l~   35 (76)
T PF13245_consen   10 SPLFVVQGPPGTGKTTTLAARIAELL   35 (76)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            345678999999999 5555555544

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=97.13  E-value=0.00063  Score=62.96  Aligned_cols=33  Identities=18%  Similarity=0.227  Sum_probs=27.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      ...-.++.||||+||||+|+.||+..+..+...
T Consensus        47 ~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~   79 (436)
T COG2256          47 HLHSMILWGPPGTGKTTLARLIAGTTNAAFEAL   79 (436)
T ss_pred             CCceeEEECCCCCCHHHHHHHHHHhhCCceEEe
Confidence            344577899999999999999999998876543

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.12  E-value=0.0021  Score=60.18  Aligned_cols=27  Identities=22%  Similarity=0.423  Sum_probs=23.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      ++..|+++||.|+||||.+..||..+.
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~~  199 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIYG  199 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            467899999999999999999998763

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=97.11  E-value=0.00043  Score=65.31  Aligned_cols=33  Identities=30%  Similarity=0.512  Sum_probs=28.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechh
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG   95 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~   95 (273)
                      ...|+|.||||+|||++|+.||+.++++++.++
T Consensus       108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id  140 (412)
T PRK05342        108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIAD  140 (412)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHhCCCceecc
Confidence            357889999999999999999999998877653

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=97.11  E-value=0.00039  Score=59.38  Aligned_cols=122  Identities=16%  Similarity=0.204  Sum_probs=59.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHH-HHccCCC--hHHHHH---------HHHHHCCCCCCHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVR-QELSPRS--ALYKQI---------ANAVNEGKLVPEDVIFAL  130 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr-~~~~~~~--~~g~~i---------~~~l~~g~~~~~~~~~~l  130 (273)
                      +..++|.||+|+|||.+|-.||+++|.++|+.|.+.- ..+.-++  +.-.++         ...+..|. ++.+.....
T Consensus         1 M~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~-i~a~ea~~~   79 (233)
T PF01745_consen    1 MKVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGI-INAEEAHER   79 (233)
T ss_dssp             -EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S---HHHHHHH
T ss_pred             CcEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCC-cCHHHHHHH
Confidence            3568899999999999999999999999999865432 1111111  100011         12345565 344445555


Q ss_pred             HHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhC-CC--ceEEEEccCHHH-HHHHHhcC
Q 024067          131 LSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIV-DV--DLVINFKSIEDQ-LVKRNLES  187 (273)
Q Consensus       131 l~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~-~~--d~vI~L~~~~e~-l~~Rl~~R  187 (273)
                      +...+....  .+.++|+.|---+....-.-+... .+  -.+..+.++++. -+.|...|
T Consensus        80 Li~~v~~~~--~~~~~IlEGGSISLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~R  138 (233)
T PF01745_consen   80 LISEVNSYS--AHGGLILEGGSISLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRR  138 (233)
T ss_dssp             HHHHHHTTT--TSSEEEEEE--HHHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHH
T ss_pred             HHHHHHhcc--ccCceEEeCchHHHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHH
Confidence            556666542  378999998643333222112222 22  257778887754 44455444

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=97.10  E-value=0.0014  Score=59.84  Aligned_cols=27  Identities=19%  Similarity=0.294  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .++..|.|+||+||||||++..||..+
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l  138 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKY  138 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            357789999999999999999999887

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=97.08  E-value=0.0005  Score=63.51  Aligned_cols=38  Identities=18%  Similarity=0.189  Sum_probs=30.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCe--echhHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPH--ISMGSLVR   99 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~--is~~dllr   99 (273)
                      .|..+.|.||||+|||.+|+.+++++|+++  ++.++|+.
T Consensus       147 ~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~s  186 (413)
T PLN00020        147 VPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELES  186 (413)
T ss_pred             CCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhc
Confidence            356677899999999999999999999865  45555554

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=97.07  E-value=0.00036  Score=68.64  Aligned_cols=39  Identities=26%  Similarity=0.478  Sum_probs=32.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC--CCeechhHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE--VPHISMGSLVR   99 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g--~~~is~~dllr   99 (273)
                      .+|++++|.||||.|||++++.+|+.+|  |..+|+|.+--
T Consensus       436 ~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tD  476 (906)
T KOG2004|consen  436 VQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTD  476 (906)
T ss_pred             CCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEecccccc
Confidence            3689999999999999999999999997  55667665543

>PRK08116 hypothetical protein; Validated

Probab=97.06  E-value=0.0082  Score=53.43  Aligned_cols=37  Identities=24%  Similarity=0.320  Sum_probs=29.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh-----CCCeechhHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVR   99 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~~dllr   99 (273)
                      +.-++|.|+||+|||.++..+++.+     .+.++++.+++.
T Consensus       114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~  155 (268)
T PRK08116        114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLN  155 (268)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence            3458899999999999999999976     345677777665

>PRK05973 replicative DNA helicase; Provisional

Probab=97.06  E-value=0.001  Score=58.11  Aligned_cols=67  Identities=18%  Similarity=0.146  Sum_probs=41.4

Q ss_pred             hhhchhhhhhccCCCcchhhcccCCC--ccchhcCCCCCCCCCCeEEEEEcCCCCChhHHHHHHHHHh---C--CCeech
Q 024067           22 RAYGSAAAAQLQYDYDEECDLHGQAS--EPMLRLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISM   94 (273)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Ivi~G~pGSGKsT~a~~La~~~---g--~~~is~   94 (273)
                      ...+..|+.+ .|.  +++.+....+  .|..  +..+.- .++..++|.|+||+|||+++..++...   |  +.+++.
T Consensus        27 ~~~~~~a~~~-g~~--~w~~~~~~~~~~~p~~--~l~GGl-~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl  100 (237)
T PRK05973         27 EALDRIAAEE-GFS--SWSLLAAKAAATTPAE--ELFSQL-KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL  100 (237)
T ss_pred             HHHHHHHHHh-ccc--hHHHHHHhccCCCCHH--HhcCCC-CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence            4445555544 433  5555543222  4444  343433 377889999999999999999887754   3  345654

>PRK06620 hypothetical protein; Validated

Probab=97.06  E-value=0.002  Score=55.48  Aligned_cols=30  Identities=13%  Similarity=0.098  Sum_probs=25.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHIS   93 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is   93 (273)
                      ..++|.||||||||++++.+++..+..+++
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~   74 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK   74 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence            457899999999999999999988865554

>PLN02796 D-glycerate 3-kinase

Probab=97.04  E-value=0.00055  Score=62.78  Aligned_cols=37  Identities=14%  Similarity=0.128  Sum_probs=31.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC-----CCeechhHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLV   98 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g-----~~~is~~dll   98 (273)
                      ++.+|.|.|++||||||+++.|...+.     ...|++|++.
T Consensus        99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY  140 (347)
T PLN02796         99 PPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY  140 (347)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence            578899999999999999999999884     3457777765

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=97.04  E-value=0.00065  Score=63.04  Aligned_cols=32  Identities=22%  Similarity=0.317  Sum_probs=27.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      +.-++|.||||+|||++++.+++.++.+++.+
T Consensus       156 p~gvLL~GppGtGKT~lakaia~~l~~~~~~v  187 (364)
T TIGR01242       156 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRV  187 (364)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhCCCCEEec
Confidence            45689999999999999999999998776544

Many proteins may score above the trusted cutoff because an internal

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=97.04  E-value=0.00054  Score=67.48  Aligned_cols=36  Identities=33%  Similarity=0.541  Sum_probs=30.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCe--echhH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPH--ISMGS   96 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~--is~~d   96 (273)
                      -+++++||.||||.|||++++.+|+.+|-.+  +|.|.
T Consensus       348 ~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGG  385 (782)
T COG0466         348 LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGG  385 (782)
T ss_pred             CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCc
Confidence            4678999999999999999999999997554  55544

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=97.01  E-value=0.00068  Score=63.70  Aligned_cols=33  Identities=21%  Similarity=0.292  Sum_probs=28.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      .|.-|+|.||||+|||++++.+|...+.+++..
T Consensus       178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i  210 (398)
T PTZ00454        178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRV  210 (398)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence            356688999999999999999999998877654

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=97.00  E-value=0.00062  Score=64.12  Aligned_cols=32  Identities=31%  Similarity=0.508  Sum_probs=28.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      ...|+|.||||+|||++|+.||+.++++++.+
T Consensus       116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~  147 (413)
T TIGR00382       116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIA  147 (413)
T ss_pred             CceEEEECCCCcCHHHHHHHHHHhcCCCeEEe
Confidence            35799999999999999999999999887643

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=97.00  E-value=0.00079  Score=60.61  Aligned_cols=30  Identities=23%  Similarity=0.289  Sum_probs=25.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCe
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPH   91 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~   91 (273)
                      .+..++|.||||+|||++++.+++.++...
T Consensus        29 ~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~   58 (305)
T TIGR00635        29 ALDHLLLYGPPGLGKTTLAHIIANEMGVNL   58 (305)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence            345688999999999999999999998653

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.00  E-value=0.00066  Score=57.60  Aligned_cols=26  Identities=27%  Similarity=0.308  Sum_probs=23.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      |..|+|+||+|+||||.+.+||.++.
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~   26 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLK   26 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHh
Confidence            56899999999999999999999883

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PF05729 NACHT: NACHT domain

Probab=96.97  E-value=0.00071  Score=54.49  Aligned_cols=23  Identities=26%  Similarity=0.420  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .++|.|+||+||||+++.++..+
T Consensus         2 ~l~I~G~~G~GKStll~~~~~~~   24 (166)
T PF05729_consen    2 VLWISGEPGSGKSTLLRKLAQQL   24 (166)
T ss_pred             EEEEECCCCCChHHHHHHHHHHH
Confidence            57899999999999999999887

>PRK04328 hypothetical protein; Provisional

Probab=96.96  E-value=0.0016  Score=57.34  Aligned_cols=33  Identities=15%  Similarity=0.194  Sum_probs=26.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh-----CCCeech
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISM   94 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~   94 (273)
                      ++-.++|.|+||+|||++|..++...     .+.++++
T Consensus        22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~   59 (249)
T PRK04328         22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL   59 (249)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence            67889999999999999999876542     2456665

>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase

Probab=96.96  E-value=0.033  Score=53.62  Aligned_cols=177  Identities=14%  Similarity=0.099  Sum_probs=85.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCC---eechhHHHHHHccCCChHHHHHHHHHHCCCC--CCHHHHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVP---HISMGSLVRQELSPRSALYKQIANAVNEGKL--VPEDVIFALLSKRL  135 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~---~is~~dllr~~~~~~~~~g~~i~~~l~~g~~--~~~~~~~~ll~~~l  135 (273)
                      ..++.|+|.|..||||+++.++|.+.++-.   +.++..=-.++.. ..-++.--+.+=..|..  ........++.+++
T Consensus        38 ~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~~eE~~-~~flwRfw~~lP~~G~I~IFdRSWY~~vlverv  116 (493)
T TIGR03708        38 GFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRPSDEERE-RPPMWRFWRRLPPKGKIGIFFGSWYTRPLIERL  116 (493)
T ss_pred             CCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCCCHHHhc-CcHHHHHHHhCCCCCeEEEEcCcccchhhHHHh
Confidence            468999999999999999999999999543   3332111001100 00011111111011211  11112222222222


Q ss_pred             HhcccCCcceEEEe-CCCCCHHHHHHHHhh----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcH
Q 024067          136 EEGYYRGESGFILD-GIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAA  210 (273)
Q Consensus       136 ~~~~~~~~~g~IlD-g~P~~~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~  210 (273)
                      ... |       -+ .+.+...+...++..    +..-+-++|+++.++..+|+..|..++...=         +.  ++
T Consensus       117 ~g~-~-------~~~~~~~~~~~I~~FE~~L~~~G~~IlKffLhIsk~EQ~kRl~~r~~~P~k~W---------K~--s~  177 (493)
T TIGR03708       117 EGR-I-------DEAKLDSHIEDINRFERMLADDGALILKFWLHLSKKQQKERLKKLEKDPETRW---------RV--TP  177 (493)
T ss_pred             cCC-C-------CHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCcccc---------CC--CH
Confidence            210 0       00 011111222233322    2334688999999999999999986552211         11  22


Q ss_pred             HHHH--HHHHHHHHhhHHHHHHHHhc----CcEEEEeCCCC---hhHHHHHHHHHHHhc
Q 024067          211 SAWK--EKFRIYAEQGKSLEDYYSKQ----RKLLNFQVAAA---PGETWQGLLSALHLQ  260 (273)
Q Consensus       211 e~~~--~rl~~y~~~~~~l~~~y~~~----~~~~~id~~~s---~~ev~~~I~~~l~~~  260 (273)
                      +.+.  ++...|....+   +.+...    .-|+.|+++.-   --.|.+.|+..|...
T Consensus       178 ~D~~~r~~wd~Y~~a~e---~ml~~T~t~~APW~vI~addK~~arl~v~~~il~~L~~~  233 (493)
T TIGR03708       178 EDWKQLKVYDRYRKLAE---RMLRYTSTPYAPWTVVEGEDDRYRSLTVGRTLLAAIRAR  233 (493)
T ss_pred             HHHHHHHhHHHHHHHHH---HHHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHHHHHH
Confidence            2333  34455554433   334333    25999998753   334555555555543

Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=96.95  E-value=0.0018  Score=56.37  Aligned_cols=34  Identities=15%  Similarity=0.170  Sum_probs=26.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh---C--CCeechh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMG   95 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~---g--~~~is~~   95 (273)
                      ++..++|.|+||||||++|.+++...   |  +.+++++
T Consensus        20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e   58 (237)
T TIGR03877        20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE   58 (237)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence            78899999999999999998876542   3  4566653

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>PHA02244 ATPase-like protein

Probab=96.95  E-value=0.00065  Score=62.84  Aligned_cols=36  Identities=19%  Similarity=0.372  Sum_probs=31.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLV   98 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dll   98 (273)
                      +..|+|.||||+|||++++.|+..++.+++.+..++
T Consensus       119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~  154 (383)
T PHA02244        119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIM  154 (383)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecCh
Confidence            456888999999999999999999999998776543

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=96.94  E-value=0.00043  Score=54.59  Aligned_cols=29  Identities=31%  Similarity=0.416  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLLEVPHIS   93 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~g~~~is   93 (273)
                      +++|.|+||.||||+++.||+.+|..+..
T Consensus         1 HvLleg~PG~GKT~la~~lA~~~~~~f~R   29 (131)
T PF07726_consen    1 HVLLEGVPGVGKTTLAKALARSLGLSFKR   29 (131)
T ss_dssp             -EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred             CEeeECCCccHHHHHHHHHHHHcCCceeE
Confidence            47899999999999999999999976654

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=96.92  E-value=0.0007  Score=54.43  Aligned_cols=24  Identities=29%  Similarity=0.304  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      +++|+|+|+.||||||+++.|-..
T Consensus         1 MkrimliG~~g~GKTTL~q~L~~~   24 (143)
T PF10662_consen    1 MKRIMLIGPSGSGKTTLAQALNGE   24 (143)
T ss_pred             CceEEEECCCCCCHHHHHHHHcCC
Confidence            468999999999999999999764

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.91  E-value=0.01  Score=54.42  Aligned_cols=46  Identities=22%  Similarity=0.312  Sum_probs=36.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeec--hhHHHHHHccCCChH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHIS--MGSLVRQELSPRSAL  108 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is--~~dllr~~~~~~~~~  108 (273)
                      |+=|++.||||+|||-+|+.+|.+.+..+|.  ..+|+++.+-.+..+
T Consensus       185 PKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRl  232 (406)
T COG1222         185 PKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARL  232 (406)
T ss_pred             CCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHH
Confidence            4457899999999999999999999877765  467887776665544

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=96.90  E-value=0.00088  Score=64.73  Aligned_cols=32  Identities=28%  Similarity=0.437  Sum_probs=27.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      +.-++|.||||+|||++++.||...+++++.+
T Consensus        88 ~~giLL~GppGtGKT~la~alA~~~~~~~~~i  119 (495)
T TIGR01241        88 PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI  119 (495)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHcCCCeeec
Confidence            44588999999999999999999998877654

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=96.90  E-value=0.001  Score=64.48  Aligned_cols=30  Identities=23%  Similarity=0.170  Sum_probs=26.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCee
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHI   92 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~i   92 (273)
                      ..+++|.|||||||||..+.||+++|+.++
T Consensus        45 ~~iLlLtGP~G~GKtttv~~La~elg~~v~   74 (519)
T PF03215_consen   45 KRILLLTGPSGCGKTTTVKVLAKELGFEVQ   74 (519)
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhCCeeE
Confidence            447889999999999999999999998665

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=96.90  E-value=0.00091  Score=59.42  Aligned_cols=30  Identities=27%  Similarity=0.300  Sum_probs=26.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCe
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPH   91 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~   91 (273)
                      ..-++++.||||-||||+|..+|.++|+..
T Consensus        51 ~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~   80 (332)
T COG2255          51 ALDHVLLFGPPGLGKTTLAHIIANELGVNL   80 (332)
T ss_pred             CcCeEEeeCCCCCcHHHHHHHHHHHhcCCe
Confidence            356899999999999999999999998754

>PRK07952 DNA replication protein DnaC; Validated

Probab=96.89  E-value=0.013  Score=51.39  Aligned_cols=36  Identities=22%  Similarity=0.435  Sum_probs=29.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh---C--CCeechhHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGSLVR   99 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~---g--~~~is~~dllr   99 (273)
                      ..++|.|+||+|||+++..|+..+   |  +.++++.+++.
T Consensus       100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~  140 (244)
T PRK07952        100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMS  140 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHH
Confidence            368899999999999999999987   2  45667777664

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=96.89  E-value=0.0019  Score=55.69  Aligned_cols=34  Identities=24%  Similarity=0.233  Sum_probs=26.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh------CCCeechh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL------EVPHISMG   95 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~------g~~~is~~   95 (273)
                      ++..++|.|+||||||+++.+++...      ++.+++++
T Consensus        18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~e   57 (226)
T PF06745_consen   18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFE   57 (226)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESS
T ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEec
Confidence            67889999999999999999876432      34566653

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]

Probab=96.88  E-value=0.0084  Score=48.92  Aligned_cols=126  Identities=17%  Similarity=0.196  Sum_probs=70.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC--CCeechhHHHHHHccCCC-hHHHH-HH-H-HHHCCCC-CC--H----HHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE--VPHISMGSLVRQELSPRS-ALYKQ-IA-N-AVNEGKL-VP--E----DVI  127 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g--~~~is~~dllr~~~~~~~-~~g~~-i~-~-~l~~g~~-~~--~----~~~  127 (273)
                      .++.+|++-|.|-||||++|..+-..+.  +-||-+|- +++.+.+.. ..+.- .. . ....|+. ++  .    +..
T Consensus        21 ~~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~-f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~e~~   99 (205)
T COG3896          21 PEGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDL-FWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPILELA   99 (205)
T ss_pred             CCceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHH-HHHhCCHHhhccccccccccccccCCceeeEeechhHHHHH
Confidence            4688999999999999999999988874  55666754 444444211 00000 00 0 0011110 10  0    111


Q ss_pred             HHHHHHHHHhcccCCcceEEEeCCCCCHHH-HHHHHhhCCC-ceEEEEccCHHHHHHHHhcCC
Q 024067          128 FALLSKRLEEGYYRGESGFILDGIPRTRIQ-AEILDQIVDV-DLVINFKSIEDQLVKRNLESE  188 (273)
Q Consensus       128 ~~ll~~~l~~~~~~~~~g~IlDg~P~~~~q-a~~l~~~~~~-d~vI~L~~~~e~l~~Rl~~R~  188 (273)
                      ..-....|.. +...+..+|.|.+-.+... .+.++.+..+ ..+|-+.||+|++.+|-..|.
T Consensus       100 ~~~~r~ai~a-~ad~G~~~i~Ddv~~~r~~L~Dc~r~l~g~~v~~VGV~~p~E~~~~Re~rr~  161 (205)
T COG3896         100 MHSRRRAIRA-YADNGMNVIADDVIWTREWLVDCLRVLEGCRVWMVGVHVPDEEGARRELRRG  161 (205)
T ss_pred             HHHHHHHHHH-HhccCcceeehhcccchhhHHHHHHHHhCCceEEEEeeccHHHHHHHHhhcC
Confidence            1111112221 2234677899988776443 3444444444 468889999999998887654

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.87  E-value=0.0011  Score=65.42  Aligned_cols=41  Identities=20%  Similarity=0.228  Sum_probs=32.5

Q ss_pred             CCCCCCCCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           54 DSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        54 ~~~~~~~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      +.....+...++.+|+||||.||||+|..+|++-|+.++.+
T Consensus       317 ~~~~s~RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEI  357 (877)
T KOG1969|consen  317 ELDPSKRPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEI  357 (877)
T ss_pred             ccCccCCCccceEEeecCCCCChhHHHHHHHHhcCceEEEe
Confidence            44444444456777999999999999999999999988754

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=96.86  E-value=0.0011  Score=60.53  Aligned_cols=30  Identities=23%  Similarity=0.265  Sum_probs=26.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCee
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHI   92 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~i   92 (273)
                      +..++|.||||+||||+++.+++.++....
T Consensus        51 ~~~~ll~GppG~GKT~la~~ia~~l~~~~~   80 (328)
T PRK00080         51 LDHVLLYGPPGLGKTTLANIIANEMGVNIR   80 (328)
T ss_pred             CCcEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence            457889999999999999999999987543

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=96.86  E-value=0.0011  Score=63.02  Aligned_cols=32  Identities=19%  Similarity=0.287  Sum_probs=27.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS   93 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is   93 (273)
                      .+..++|.||||+|||++++.+|..++.+++.
T Consensus       216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~  247 (438)
T PTZ00361        216 PPKGVILYGPPGTGKTLLAKAVANETSATFLR  247 (438)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEE
Confidence            34568899999999999999999999877664

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=96.86  E-value=0.001  Score=57.01  Aligned_cols=37  Identities=16%  Similarity=0.140  Sum_probs=28.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC-----CCeechhHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLV   98 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g-----~~~is~~dll   98 (273)
                      .+..++|+|+||+|||++++.+++...     +.+++..++.
T Consensus        37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~   78 (226)
T TIGR03420        37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA   78 (226)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence            456888999999999999999998762     4456654443

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK04195 replication factor C large subunit; Provisional

Probab=96.84  E-value=0.001  Score=64.12  Aligned_cols=32  Identities=28%  Similarity=0.326  Sum_probs=28.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      +..++|.||||+||||+++.|++.+++.++.+
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el~~~~iel   70 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDYGWEVIEL   70 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            56788999999999999999999999877654

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=96.84  E-value=0.00085  Score=51.11  Aligned_cols=23  Identities=35%  Similarity=0.466  Sum_probs=20.4

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhC
Q 024067           66 WVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        66 Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      |.|.|+||+|||++++.|++.+.
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~   23 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLL   23 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHH
Confidence            57899999999999999998753

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=96.81  E-value=0.0011  Score=62.28  Aligned_cols=38  Identities=13%  Similarity=0.095  Sum_probs=31.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC-----CCeechhHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLV   98 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g-----~~~is~~dll   98 (273)
                      .+|.+|.|.|+.||||||+++.|...+.     +..|+.|++.
T Consensus       210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY  252 (460)
T PLN03046        210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY  252 (460)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence            3678889999999999999999987763     4567777766

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=96.80  E-value=0.0028  Score=55.06  Aligned_cols=25  Identities=20%  Similarity=0.276  Sum_probs=20.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ++-.++|.|+||+||||+|.+++..
T Consensus        23 ~g~~~~i~G~~G~GKTtl~~~~~~~   47 (230)
T PRK08533         23 AGSLILIEGDESTGKSILSQRLAYG   47 (230)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            5668999999999999998665443

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=96.80  E-value=0.00075  Score=59.03  Aligned_cols=22  Identities=36%  Similarity=0.595  Sum_probs=19.4

Q ss_pred             EEcCCCCChhHHHHHHHHHhCC
Q 024067           68 LIGDPGVKKHVYADNLSKLLEV   89 (273)
Q Consensus        68 i~G~pGSGKsT~a~~La~~~g~   89 (273)
                      |+||+||||||+++.+.+.+..
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~~   22 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLES   22 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHh
Confidence            6899999999999999998854

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>COG3911 Predicted ATPase [General function prediction only]

Probab=96.79  E-value=0.0012  Score=53.18  Aligned_cols=29  Identities=24%  Similarity=0.469  Sum_probs=25.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~   90 (273)
                      .|+++++|+|.||+||||+...|+.. |+.
T Consensus         7 nR~~~fIltGgpGaGKTtLL~aLa~~-Gfa   35 (183)
T COG3911           7 NRHKRFILTGGPGAGKTTLLAALARA-GFA   35 (183)
T ss_pred             ccceEEEEeCCCCCcHHHHHHHHHHc-Cce
Confidence            56788999999999999999999876 653

>PRK13342 recombination factor protein RarA; Reviewed

Probab=96.78  E-value=0.0013  Score=62.05  Aligned_cols=33  Identities=24%  Similarity=0.373  Sum_probs=27.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      +...++|.||||+||||+++.|++..+..++..
T Consensus        35 ~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l   67 (413)
T PRK13342         35 RLSSMILWGPPGTGKTTLARIIAGATDAPFEAL   67 (413)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence            344788899999999999999999998776544

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.78  E-value=0.017  Score=54.19  Aligned_cols=26  Identities=23%  Similarity=0.231  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++..|+|+||+|+||||.+..||..+
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~~L  265 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQF  265 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHH
Confidence            45789999999999999999999876

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=96.78  E-value=0.0015  Score=59.00  Aligned_cols=34  Identities=18%  Similarity=0.138  Sum_probs=29.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSL   97 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dl   97 (273)
                      ++.|+|+||.|||||.+|-.||++ +...||.|.+
T Consensus         4 ~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~   37 (300)
T PRK14729          4 NKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSI   37 (300)
T ss_pred             CcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHH
Confidence            347999999999999999999999 5589998754

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=96.77  E-value=0.0013  Score=50.22  Aligned_cols=23  Identities=30%  Similarity=0.367  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      +|+|+|++||||||+.++|+...
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~   23 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGE   23 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CEEEECcCCCCHHHHHHHHhcCC
Confidence            68999999999999999998754

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=96.76  E-value=0.0015  Score=63.03  Aligned_cols=87  Identities=10%  Similarity=0.119  Sum_probs=50.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh---C--CCeechhHHHHHHccCCChHHHHHHHHHHCCCCC-----C----HHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGSLVRQELSPRSALYKQIANAVNEGKLV-----P----EDVI  127 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~---g--~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~-----~----~~~~  127 (273)
                      ++..++|.|+||+||||++.+++...   |  +.|++..+-..+....-..+|-.+.+++.+|.+.     |    .+..
T Consensus       262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~~  341 (484)
T TIGR02655       262 KDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLEDH  341 (484)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHHH
Confidence            67789999999999999999998865   3  5677654332222211123333345555555331     1    1233


Q ss_pred             HHHHHHHHHhcccCCcceEEEeCC
Q 024067          128 FALLSKRLEEGYYRGESGFILDGI  151 (273)
Q Consensus       128 ~~ll~~~l~~~~~~~~~g~IlDg~  151 (273)
                      ...+.+.+.+.   ..+-+|||..
T Consensus       342 ~~~i~~~i~~~---~~~~vvIDsi  362 (484)
T TIGR02655       342 LQIIKSEIADF---KPARIAIDSL  362 (484)
T ss_pred             HHHHHHHHHHc---CCCEEEEcCH
Confidence            34444555442   3467888874

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=96.76  E-value=0.0016  Score=56.21  Aligned_cols=36  Identities=14%  Similarity=0.135  Sum_probs=28.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh-----CCCeechhHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLV   98 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~~dll   98 (273)
                      ...++|+|++|+|||+++..+++..     .+.+++..++.
T Consensus        42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~   82 (227)
T PRK08903         42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL   82 (227)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH
Confidence            4468899999999999999999876     56667665443

>PRK06526 transposase; Provisional

Probab=96.73  E-value=0.0017  Score=57.40  Aligned_cols=38  Identities=24%  Similarity=0.215  Sum_probs=28.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh-----CCCeechhHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVR   99 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~~dllr   99 (273)
                      .+..++|+||||+|||+++..|+...     .+.++++.+++.
T Consensus        97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~  139 (254)
T PRK06526         97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVA  139 (254)
T ss_pred             cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHH
Confidence            45679999999999999999998765     234455555554

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=96.71  E-value=0.0014  Score=57.61  Aligned_cols=26  Identities=27%  Similarity=0.307  Sum_probs=23.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      +..++|.|++|+||||+++.+++.+.
T Consensus        43 ~~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        43 EGFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            45788999999999999999999876

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.70  E-value=0.0016  Score=59.23  Aligned_cols=32  Identities=34%  Similarity=0.455  Sum_probs=29.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS   93 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is   93 (273)
                      .|+.|+++||.|.|||.+|++||+..|.|+|-
T Consensus        49 ~PKNILMIGpTGVGKTEIARRLAkl~~aPFiK   80 (444)
T COG1220          49 TPKNILMIGPTGVGKTEIARRLAKLAGAPFIK   80 (444)
T ss_pred             CccceEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence            47899999999999999999999999999875

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.70  E-value=0.0015  Score=58.86  Aligned_cols=31  Identities=35%  Similarity=0.537  Sum_probs=27.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHIS   93 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is   93 (273)
                      .-.|+++||.|||||-+|+.||+.+++|+-=
T Consensus        97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFai  127 (408)
T COG1219          97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAI  127 (408)
T ss_pred             eccEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence            3479999999999999999999999999753

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=96.70  E-value=0.0019  Score=53.64  Aligned_cols=27  Identities=15%  Similarity=-0.029  Sum_probs=23.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      ++..+.|+|++||||||+.+.|...+.
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~l~   31 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPALC   31 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHHHh
Confidence            466888999999999999999998874

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=96.69  E-value=0.002  Score=53.74  Aligned_cols=39  Identities=26%  Similarity=0.388  Sum_probs=30.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh-----CCCeechhHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQ  100 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~~dllr~  100 (273)
                      ++..++|.|+||+|||.+|..++.++     .+.++++.+++.+
T Consensus        46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~   89 (178)
T PF01695_consen   46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDE   89 (178)
T ss_dssp             C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHH
T ss_pred             cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecc
Confidence            45679999999999999999998755     4678888888864

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=96.69  E-value=0.00092  Score=57.78  Aligned_cols=22  Identities=41%  Similarity=0.771  Sum_probs=19.3

Q ss_pred             EEEEcCCCCChhHHHHHHHHHh
Q 024067           66 WVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        66 Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      -+|+|||||||||.|.-..+-+
T Consensus         5 qvVIGPPgSGKsTYc~g~~~fl   26 (290)
T KOG1533|consen    5 QVVIGPPGSGKSTYCNGMSQFL   26 (290)
T ss_pred             eEEEcCCCCCccchhhhHHHHH
Confidence            5789999999999998887766

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=96.69  E-value=0.0021  Score=50.46  Aligned_cols=29  Identities=28%  Similarity=0.444  Sum_probs=24.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~   90 (273)
                      .+..|++.|+-||||||+++.|++.+|..
T Consensus        14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg~~   42 (123)
T PF02367_consen   14 PGDVILLSGDLGAGKTTFVRGLARALGID   42 (123)
T ss_dssp             S-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            46789999999999999999999999864

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>CHL00176 ftsH cell division protein; Validated

Probab=96.68  E-value=0.0017  Score=64.47  Aligned_cols=32  Identities=31%  Similarity=0.494  Sum_probs=28.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      +.-++|.||||+|||++++.||...+++++.+
T Consensus       216 p~gVLL~GPpGTGKT~LAralA~e~~~p~i~i  247 (638)
T CHL00176        216 PKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSI  247 (638)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCeeec
Confidence            45689999999999999999999999887764

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.68  E-value=0.0042  Score=55.71  Aligned_cols=55  Identities=18%  Similarity=0.163  Sum_probs=39.5

Q ss_pred             ccchhcCCCCCCCCCCeEEEEEcCCCCChhHHHHHHHHHhCCCe--echhHHHHHHc
Q 024067           48 EPMLRLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPH--ISMGSLVRQEL  102 (273)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~--is~~dllr~~~  102 (273)
                      -|+..-..+......-.-|++.||||+|||-+|+.+|-+-+-.+  ||..||+.+-+
T Consensus       151 LPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWm  207 (439)
T KOG0739|consen  151 LPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWM  207 (439)
T ss_pred             ecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHh
Confidence            45555555544432234588999999999999999999998655  55678887644

>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]

Probab=96.68  E-value=0.0076  Score=48.83  Aligned_cols=43  Identities=30%  Similarity=0.345  Sum_probs=32.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh----CCCeechhHHHHHHcc
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL----EVPHISMGSLVRQELS  103 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~----g~~~is~~dllr~~~~  103 (273)
                      .++..|-|+|.+||||||+|-.|.+.+    .+.|+--+|-+|.-++
T Consensus        29 qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN   75 (207)
T KOG0635|consen   29 QKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLN   75 (207)
T ss_pred             CCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccc
Confidence            467788899999999999999999877    2455555566665443

>TIGR00101 ureG urease accessory protein UreG

Probab=96.67  E-value=0.0018  Score=55.05  Aligned_cols=26  Identities=19%  Similarity=0.286  Sum_probs=23.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      |.+|.|+|++||||||+.++|...+.
T Consensus         1 ~~~i~i~G~~GsGKTTll~~l~~~l~   26 (199)
T TIGR00101         1 PLKIGVAGPVGSGKTALIEALTRALR   26 (199)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhhC
Confidence            46899999999999999999998763

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=96.66  E-value=0.002  Score=58.58  Aligned_cols=35  Identities=17%  Similarity=0.308  Sum_probs=27.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhC-------CCeechhHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLE-------VPHISMGSLV   98 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g-------~~~is~~dll   98 (273)
                      ..++|.||||+||||+++.+++.+.       +.+++..++.
T Consensus        37 ~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~   78 (337)
T PRK12402         37 PHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFF   78 (337)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhh
Confidence            3588999999999999999999873       2355655543

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=96.66  E-value=0.0026  Score=49.96  Aligned_cols=29  Identities=21%  Similarity=0.304  Sum_probs=26.5

Q ss_pred             CCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           59 PPRRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        59 ~~~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .|.+|..+.+.|+||+||+.+++.||+.+
T Consensus        49 ~p~KpLVlSfHG~tGtGKn~v~~liA~~l   77 (127)
T PF06309_consen   49 NPRKPLVLSFHGWTGTGKNFVSRLIAEHL   77 (127)
T ss_pred             CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence            56789999999999999999999999984

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=96.66  E-value=0.013  Score=51.80  Aligned_cols=39  Identities=36%  Similarity=0.491  Sum_probs=31.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh---C--CCeechhHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGSLVRQ  100 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~---g--~~~is~~dllr~  100 (273)
                      ++..++|.|+||+|||.++..|+.++   |  +.++.+.+++.+
T Consensus       104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~  147 (254)
T COG1484         104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSK  147 (254)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence            67789999999999999999998876   3  456777777763

>PRK13695 putative NTPase; Provisional

Probab=96.65  E-value=0.0017  Score=53.61  Aligned_cols=24  Identities=29%  Similarity=0.494  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      |+|+|+|++|+||||+++.|+..+
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~~l   24 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAELL   24 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            579999999999999999988765

>PRK08084 DNA replication initiation factor; Provisional

Probab=96.64  E-value=0.0017  Score=56.61  Aligned_cols=33  Identities=12%  Similarity=0.052  Sum_probs=27.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhC-----CCeechhH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGS   96 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g-----~~~is~~d   96 (273)
                      ..++|.||||+|||+++..+++...     +.+++.++
T Consensus        46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~   83 (235)
T PRK08084         46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK   83 (235)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence            4788999999999999999998764     56777654

>PRK06893 DNA replication initiation factor; Validated

Probab=96.64  E-value=0.0021  Score=55.80  Aligned_cols=32  Identities=13%  Similarity=0.098  Sum_probs=26.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh-----CCCeechh
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG   95 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~~   95 (273)
                      ..++|.||||+|||+++..++..+     ++.++++.
T Consensus        40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~   76 (229)
T PRK06893         40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS   76 (229)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence            468899999999999999999876     56677653

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=96.64  E-value=0.0069  Score=56.80  Aligned_cols=104  Identities=24%  Similarity=0.340  Sum_probs=60.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh---C--CCeechhHHHHHHccCCChHHHHHHHH--------HHCC-CCCCHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGSLVRQELSPRSALYKQIANA--------VNEG-KLVPEDV  126 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~---g--~~~is~~dllr~~~~~~~~~g~~i~~~--------l~~g-~~~~~~~  126 (273)
                      .+|..|.+.|.-||||||.|..||..|   |  +-.+++ |+.|-.      -.++++..        +..+ +.-|.++
T Consensus        98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaa-D~~RpA------A~eQL~~La~q~~v~~f~~~~~~~Pv~I  170 (451)
T COG0541          98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAA-DTYRPA------AIEQLKQLAEQVGVPFFGSGTEKDPVEI  170 (451)
T ss_pred             CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEec-ccCChH------HHHHHHHHHHHcCCceecCCCCCCHHHH
Confidence            457889999999999999999999988   2  223443 444421      12233222        1122 2234455


Q ss_pred             HHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhh------CCCce-EEEEcc
Q 024067          127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI------VDVDL-VINFKS  175 (273)
Q Consensus       127 ~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~------~~~d~-vI~L~~  175 (273)
                      ..+-++.+-..    ...-+|+|.-.|.....+.+++.      ..||- ++.+|+
T Consensus       171 ak~al~~ak~~----~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDa  222 (451)
T COG0541         171 AKAALEKAKEE----GYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDA  222 (451)
T ss_pred             HHHHHHHHHHc----CCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEec
Confidence            55555443333    24678999887776655555433      56764 444454

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=96.63  E-value=0.0043  Score=53.79  Aligned_cols=35  Identities=20%  Similarity=0.131  Sum_probs=27.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCeechh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG   95 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~~   95 (273)
                      .++-.++|.|+|||||||++..++...     .+.+++++
T Consensus        23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e   62 (234)
T PRK06067         23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE   62 (234)
T ss_pred             cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence            367788899999999999999996543     34566653

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=96.63  E-value=0.00096  Score=55.31  Aligned_cols=30  Identities=20%  Similarity=0.201  Sum_probs=23.6

Q ss_pred             EEEEcCCCCChhHHHHHHHHHh-----CCCeechh
Q 024067           66 WVLIGDPGVKKHVYADNLSKLL-----EVPHISMG   95 (273)
Q Consensus        66 Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~~   95 (273)
                      ++|.|+||+|||+++..++...     .+.+++++
T Consensus         2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e   36 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE   36 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence            6899999999999999887754     34566653

A related protein is found in archaea.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.63  E-value=0.0021  Score=49.16  Aligned_cols=23  Identities=30%  Similarity=0.356  Sum_probs=20.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLS   84 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La   84 (273)
                      .+..++|.|++||||||+++.+.
T Consensus        14 ~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          14 GKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             CCEEEEEEcCCCCCHHHHHHHhh
Confidence            46788999999999999999987

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.61  E-value=0.0019  Score=53.58  Aligned_cols=26  Identities=38%  Similarity=0.525  Sum_probs=23.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEV   89 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~   89 (273)
                      ..++++||+|+|||.+++.|++.+..
T Consensus         4 ~~~ll~GpsGvGKT~la~~la~~l~~   29 (171)
T PF07724_consen    4 SNFLLAGPSGVGKTELAKALAELLFV   29 (171)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            46789999999999999999999985

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=96.61  E-value=0.0016  Score=51.99  Aligned_cols=23  Identities=22%  Similarity=0.241  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      +++|+|+||+||||++..++...
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~   23 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNI   23 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHH
Confidence            36799999999999999998876

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=96.60  E-value=0.0018  Score=53.28  Aligned_cols=28  Identities=21%  Similarity=0.227  Sum_probs=18.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      ..+..++|.|++|+|||++.+.+.+.+.
T Consensus        22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~~   49 (185)
T PF13191_consen   22 GSPRNLLLTGESGSGKTSLLRALLDRLA   49 (185)
T ss_dssp             -----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3567899999999999999998888763

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.60  E-value=0.0018  Score=55.46  Aligned_cols=24  Identities=29%  Similarity=0.408  Sum_probs=21.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLS   84 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La   84 (273)
                      .++-.++|+||+||||||+.+-|.
T Consensus        26 ~~Gevv~iiGpSGSGKSTlLRclN   49 (240)
T COG1126          26 EKGEVVVIIGPSGSGKSTLLRCLN   49 (240)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHH
Confidence            367889999999999999999885

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.59  E-value=0.0015  Score=65.34  Aligned_cols=32  Identities=28%  Similarity=0.439  Sum_probs=28.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      |+=++|+||||+|||-+|+.+|.+-|+|++++
T Consensus       344 PkGvLL~GPPGTGKTLLAKAiAGEAgVPF~sv  375 (774)
T KOG0731|consen  344 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSV  375 (774)
T ss_pred             cCceEEECCCCCcHHHHHHHHhcccCCceeee
Confidence            34477899999999999999999999999875

>PRK09183 transposase/IS protein; Provisional

Probab=96.58  E-value=0.0026  Score=56.35  Aligned_cols=38  Identities=29%  Similarity=0.300  Sum_probs=28.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh---C--CCeechhHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGSLV   98 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~---g--~~~is~~dll   98 (273)
                      .++..++|+||||+|||+++..|+...   |  +.+++..+++
T Consensus       100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~  142 (259)
T PRK09183        100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLL  142 (259)
T ss_pred             hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHH
Confidence            356678899999999999999997654   3  3455655555

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=96.56  E-value=0.014  Score=51.87  Aligned_cols=44  Identities=23%  Similarity=0.323  Sum_probs=34.5

Q ss_pred             CCCCCCeEEEEEcCCCCChhHHHHHHHHHhCC-----CeechhHHHHHH
Q 024067           58 SPPRRGVQWVLIGDPGVKKHVYADNLSKLLEV-----PHISMGSLVRQE  101 (273)
Q Consensus        58 ~~~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~-----~~is~~dllr~~  101 (273)
                      +.+.+|+.|+++|.-||||||.+++|-.++.-     -.|+.|--++..
T Consensus        14 ~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~v   62 (366)
T KOG1532|consen   14 GAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNV   62 (366)
T ss_pred             ccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcC
Confidence            34568899999999999999999999888732     246677777654

>PRK08181 transposase; Validated

Probab=96.55  E-value=0.0031  Score=56.15  Aligned_cols=39  Identities=28%  Similarity=0.405  Sum_probs=31.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh---C--CCeechhHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGSLVRQ  100 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~---g--~~~is~~dllr~  100 (273)
                      ++..++|+||||+|||.++..++...   |  +.++++.+++.+
T Consensus       105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~  148 (269)
T PRK08181        105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQK  148 (269)
T ss_pred             cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHH
Confidence            45679999999999999999998654   3  667888777764

>PRK04296 thymidine kinase; Provisional

Probab=96.55  E-value=0.0022  Score=53.98  Aligned_cols=25  Identities=8%  Similarity=-0.171  Sum_probs=22.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      +..++++|+||+||||.+..++.++
T Consensus         2 g~i~litG~~GsGKTT~~l~~~~~~   26 (190)
T PRK04296          2 AKLEFIYGAMNSGKSTELLQRAYNY   26 (190)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHHH
Confidence            5688999999999999999999887

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=96.55  E-value=0.0019  Score=59.03  Aligned_cols=42  Identities=24%  Similarity=0.350  Sum_probs=32.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC----CCeechhHHHHHHcc
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLE----VPHISMGSLVRQELS  103 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g----~~~is~~dllr~~~~  103 (273)
                      .+.-|+|.||||+|||-+|--+|+.+|    |.-++..+++..++.
T Consensus        64 aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~k  109 (450)
T COG1224          64 AGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVK  109 (450)
T ss_pred             cccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeeccc
Confidence            467789999999999999999999997    444555555554443

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=96.53  E-value=0.002  Score=62.77  Aligned_cols=26  Identities=27%  Similarity=0.359  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      +..+++|+||||+||||+++.|++.+
T Consensus       102 ~~~IL~LvGPpG~GKSsLa~~la~~l  127 (644)
T PRK15455        102 KKQILYLLGPVGGGKSSLAERLKSLM  127 (644)
T ss_pred             CCceEEEecCCCCCchHHHHHHHHHH
Confidence            55689999999999999999999976

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.52  E-value=0.0084  Score=57.63  Aligned_cols=32  Identities=25%  Similarity=0.353  Sum_probs=28.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      |+=|+++||||+|||-+|+.+|-+-|+|++.+
T Consensus       337 PKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~  368 (752)
T KOG0734|consen  337 PKGVLLVGPPGTGKTLLARAVAGEAGVPFFYA  368 (752)
T ss_pred             CCceEEeCCCCCchhHHHHHhhcccCCCeEec
Confidence            45588999999999999999999999998764

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.52  E-value=0.018  Score=57.11  Aligned_cols=27  Identities=26%  Similarity=0.375  Sum_probs=24.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEV   89 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~   89 (273)
                      +..++|.|++|+||||+++.|++.+++
T Consensus        38 pHA~LFtGP~GvGKTTLAriLAkaLnC   64 (700)
T PRK12323         38 HHAYLFTGTRGVGKTTLSRILAKSLNC   64 (700)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            456789999999999999999999987

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.52  E-value=0.0023  Score=54.22  Aligned_cols=24  Identities=13%  Similarity=0.194  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhC
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      .|+|.||+||||||+...|...+.
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            578999999999999999888774

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=96.51  E-value=0.0024  Score=64.71  Aligned_cols=32  Identities=22%  Similarity=0.307  Sum_probs=28.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      +.-|+|.||||+|||++++.||..++++++++
T Consensus       487 ~~giLL~GppGtGKT~lakalA~e~~~~fi~v  518 (733)
T TIGR01243       487 PKGVLLFGPPGTGKTLLAKAVATESGANFIAV  518 (733)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence            34588999999999999999999999887764

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=96.51  E-value=0.0023  Score=61.79  Aligned_cols=32  Identities=25%  Similarity=0.279  Sum_probs=28.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      +..++|.||||+|||.+|+.+|..++.+++++
T Consensus       276 ~~giLl~GpPGtGKT~lAkava~~~~~~fi~v  307 (494)
T COG0464         276 PKGVLLYGPPGTGKTLLAKAVALESRSRFISV  307 (494)
T ss_pred             CCeeEEECCCCCCHHHHHHHHHhhCCCeEEEe
Confidence            45788999999999999999999888877765

>TIGR03689 pup_AAA proteasome ATPase

Probab=96.51  E-value=0.0021  Score=62.11  Aligned_cols=28  Identities=25%  Similarity=0.323  Sum_probs=24.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~   90 (273)
                      +.-++|.||||+|||++++.+++.++..
T Consensus       216 p~GILLyGPPGTGKT~LAKAlA~eL~~~  243 (512)
T TIGR03689       216 PKGVLLYGPPGCGKTLIAKAVANSLAQR  243 (512)
T ss_pred             CcceEEECCCCCcHHHHHHHHHHhhccc
Confidence            4468899999999999999999998654

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>PLN03025 replication factor C subunit; Provisional

Probab=96.50  E-value=0.0025  Score=58.07  Aligned_cols=26  Identities=27%  Similarity=0.245  Sum_probs=22.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      ...++|.||||+||||++..+++.+.
T Consensus        34 ~~~lll~Gp~G~GKTtla~~la~~l~   59 (319)
T PLN03025         34 MPNLILSGPPGTGKTTSILALAHELL   59 (319)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHh
Confidence            34578999999999999999999873

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=96.49  E-value=0.032  Score=54.74  Aligned_cols=124  Identities=18%  Similarity=0.104  Sum_probs=66.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeec--hhHHHHHHcc-CCChHHHHHH-------------HHHH---CCCC-
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS--MGSLVRQELS-PRSALYKQIA-------------NAVN---EGKL-  121 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is--~~dllr~~~~-~~~~~g~~i~-------------~~l~---~g~~-  121 (273)
                      -|+-+.+.||||+|||.+|+.+|.+-++|+++  -.+.+.--.. +.+.......             ++-.   ++.. 
T Consensus       182 iPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g  261 (596)
T COG0465         182 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAG  261 (596)
T ss_pred             cccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCC
Confidence            35668899999999999999999999988554  4455543322 1111111111             1100   0000 


Q ss_pred             --CCHHHHHHHHHHHHHhccc-CCcce-EEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHh
Q 024067          122 --VPEDVIFALLSKRLEEGYY-RGESG-FILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNL  185 (273)
Q Consensus       122 --~~~~~~~~ll~~~l~~~~~-~~~~g-~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~  185 (273)
                        ...+...+.+.+.+-+.+- ..+.| +|+.+.+|--..-..|-.-+.+|.-|.++.|+-...+.+.
T Consensus       262 ~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~Il  329 (596)
T COG0465         262 LGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQIL  329 (596)
T ss_pred             CCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHH
Confidence              0112222233333332211 12345 4667777654444445455788999999999844444443

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=96.48  E-value=0.0028  Score=58.07  Aligned_cols=27  Identities=26%  Similarity=0.436  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .++..|.|+|+|||||||++..|...+
T Consensus        54 ~~~~~igi~G~~GaGKSTl~~~l~~~l   80 (332)
T PRK09435         54 GNALRIGITGVPGVGKSTFIEALGMHL   80 (332)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence            357889999999999999999988877

>cd04163 Era Era subfamily

Probab=96.47  E-value=0.0025  Score=50.69  Aligned_cols=24  Identities=21%  Similarity=0.259  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ..+|+++|++||||||+...|...
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~   26 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQ   26 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            467999999999999999998753

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=96.46  E-value=0.0014  Score=60.36  Aligned_cols=38  Identities=32%  Similarity=0.440  Sum_probs=27.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC--CCe--echhHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLE--VPH--ISMGSLVR   99 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g--~~~--is~~dllr   99 (273)
                      .+.-|+|.||||+|||.+|..+|+.+|  +|+  ++..++..
T Consensus        49 aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS   90 (398)
T PF06068_consen   49 AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYS   90 (398)
T ss_dssp             TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-B
T ss_pred             cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeee
Confidence            467899999999999999999999997  554  44455543

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>TIGR00763 lon ATP-dependent protease La

Probab=96.46  E-value=0.0026  Score=64.83  Aligned_cols=32  Identities=28%  Similarity=0.513  Sum_probs=27.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS   93 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is   93 (273)
                      ++..++|.||||+||||+|+.||+.++.+++.
T Consensus       346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~  377 (775)
T TIGR00763       346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFVR  377 (775)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhcCCeEE
Confidence            45578999999999999999999999877654

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein

Probab=96.45  E-value=0.022  Score=49.51  Aligned_cols=28  Identities=18%  Similarity=0.028  Sum_probs=24.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEV   89 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~   89 (273)
                      .++.|+|.|..||||+.+.+.|.+.++=
T Consensus        30 ~~vlIl~eG~d~sGKg~~I~~l~~~lDP   57 (228)
T PF03976_consen   30 IPVLILFEGWDASGKGGTINRLIEWLDP   57 (228)
T ss_dssp             HEEEEEEEESTTSSHHHHHHHHHCCS-G
T ss_pred             CcEEEEEeccccCCchHHHHHHHHhCCC
Confidence            4689999999999999999999998853

The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria

Probab=96.45  E-value=0.0033  Score=50.93  Aligned_cols=32  Identities=22%  Similarity=0.255  Sum_probs=26.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechh
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG   95 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~   95 (273)
                      +.-++|+|++|+||||++..|.++ |..+++-|
T Consensus        14 g~gvLi~G~sG~GKStlal~L~~~-g~~lvaDD   45 (149)
T cd01918          14 GIGVLITGPSGIGKSELALELIKR-GHRLVADD   45 (149)
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc-CCeEEECC
Confidence            567899999999999999999876 77777543

It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=96.45  E-value=0.0029  Score=55.67  Aligned_cols=26  Identities=31%  Similarity=0.394  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      +..+|-|+||||+||||+...|.+.|
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~~~~   53 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALIREL   53 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred             CceEEEeeCCCCCcHHHHHHHHHHHH
Confidence            56789999999999999999999887

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.44  E-value=0.0028  Score=60.89  Aligned_cols=27  Identities=26%  Similarity=0.363  Sum_probs=24.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEV   89 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~   89 (273)
                      +..++|.||||+||||+|+.+|+.+++
T Consensus        36 ~~~~Lf~GPpGtGKTTlA~~lA~~l~~   62 (472)
T PRK14962         36 SHAYIFAGPRGTGKTTVARILAKSLNC   62 (472)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            345889999999999999999999876

>cd04155 Arl3 Arl3 subfamily

Probab=96.43  E-value=0.0027  Score=51.69  Aligned_cols=25  Identities=12%  Similarity=0.146  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      +..+|+|+|++||||||+.+.|...
T Consensus        13 ~~~~v~i~G~~g~GKStLl~~l~~~   37 (173)
T cd04155          13 EEPRILILGLDNAGKTTILKQLASE   37 (173)
T ss_pred             CccEEEEEccCCCCHHHHHHHHhcC
Confidence            4678999999999999999999753

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PHA03134 thymidine kinase; Provisional

Probab=96.41  E-value=0.33  Score=44.47  Aligned_cols=26  Identities=23%  Similarity=0.183  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+-.+|.|.|+.|.||||.++.|+..
T Consensus        11 ~~~~rvYlDG~~GvGKTT~~~~l~~~   36 (340)
T PHA03134         11 VRIVRIYLDGAYGIGKSTTGRVMASA   36 (340)
T ss_pred             ccEEEEEEeCCCcCCHHHHHHHHHHh
Confidence            35678999999999999999888864

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=96.41  E-value=0.0025  Score=59.98  Aligned_cols=24  Identities=25%  Similarity=0.555  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhC
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      =|+|.|+||+||||.|+.||+.|.
T Consensus       265 GILIAG~PGaGKsTFaqAlAefy~  288 (604)
T COG1855         265 GILIAGAPGAGKSTFAQALAEFYA  288 (604)
T ss_pred             ceEEecCCCCChhHHHHHHHHHHH
Confidence            378899999999999999999883

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.40  E-value=0.0024  Score=62.09  Aligned_cols=58  Identities=21%  Similarity=0.204  Sum_probs=40.1

Q ss_pred             ccCCCccchhcCCCCCCCC-CCeEEEEEcCCCCChhHHHHHHHHHhCCCeech--hHHHHH
Q 024067           43 HGQASEPMLRLDSAGSPPR-RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVRQ  100 (273)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~-~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~--~dllr~  100 (273)
                      +.-+-.|+.+-|.+....- -|-=|+++||||+|||-+|+.+|.+-|..+|++  -+|+.+
T Consensus       524 ~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNk  584 (802)
T KOG0733|consen  524 NMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNK  584 (802)
T ss_pred             HHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHH
Confidence            3344466665554432211 244588999999999999999999999888886  345543

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=96.40  E-value=0.021  Score=56.28  Aligned_cols=36  Identities=14%  Similarity=0.233  Sum_probs=30.0

Q ss_pred             EEEEcCCCCChhHHHHHHHHHh-------CCCeechhHHHHHH
Q 024067           66 WVLIGDPGVKKHVYADNLSKLL-------EVPHISMGSLVRQE  101 (273)
Q Consensus        66 Ivi~G~pGSGKsT~a~~La~~~-------g~~~is~~dllr~~  101 (273)
                      ++|.|++|+|||.++..++...       .+.|++..+++.+.
T Consensus       317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el  359 (617)
T PRK14086        317 LFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEF  359 (617)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH
Confidence            8899999999999999999865       34788888877543

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=96.39  E-value=0.0027  Score=61.10  Aligned_cols=25  Identities=20%  Similarity=0.352  Sum_probs=22.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      |+++.++||||+||||+.+.|..+|
T Consensus        69 PfIvavvGPpGtGKsTLirSlVrr~   93 (1077)
T COG5192          69 PFIVAVVGPPGTGKSTLIRSLVRRF   93 (1077)
T ss_pred             CeEEEeecCCCCChhHHHHHHHHHH
Confidence            5666699999999999999999987

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=96.39  E-value=0.003  Score=63.99  Aligned_cols=32  Identities=25%  Similarity=0.304  Sum_probs=27.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      +..|+|.||||+||||+++.|++.++.+++.+
T Consensus       212 ~~giLL~GppGtGKT~laraia~~~~~~~i~i  243 (733)
T TIGR01243       212 PKGVLLYGPPGTGKTLLAKAVANEAGAYFISI  243 (733)
T ss_pred             CceEEEECCCCCChHHHHHHHHHHhCCeEEEE
Confidence            45688999999999999999999998776543

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=96.39  E-value=0.0029  Score=48.38  Aligned_cols=21  Identities=29%  Similarity=0.491  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 024067           65 QWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      +|+|+|+||+||||+...|..
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~   21 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTG   21 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHhc
Confidence            588999999999999999984

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=96.38  E-value=0.0044  Score=52.58  Aligned_cols=36  Identities=25%  Similarity=0.214  Sum_probs=29.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCeechhH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGS   96 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~~d   96 (273)
                      .++..+.|.|+||||||++|..++...     .+.+|++..
T Consensus        10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~   50 (209)
T TIGR02237        10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG   50 (209)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence            478899999999999999999998654     356777643

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]

Probab=96.36  E-value=0.33  Score=41.18  Aligned_cols=25  Identities=20%  Similarity=0.226  Sum_probs=22.5

Q ss_pred             CCCceEEEEccCHHHHHHHHhcCCc
Q 024067          165 VDVDLVINFKSIEDQLVKRNLESEA  189 (273)
Q Consensus       165 ~~~d~vI~L~~~~e~l~~Rl~~R~~  189 (273)
                      ..+|.+|+|.++++++.+|+..|..
T Consensus       152 v~~dgiIYLrasPetc~~Ri~~R~R  176 (244)
T KOG4235|consen  152 VSLDGIIYLRASPETCYKRIYLRAR  176 (244)
T ss_pred             cccceEEEeecChHHHHHHHHHHhh
Confidence            4689999999999999999988874

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.36  E-value=0.0035  Score=58.17  Aligned_cols=28  Identities=36%  Similarity=0.494  Sum_probs=24.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~   90 (273)
                      +..++|.||||+||||+|+.+++.+++.
T Consensus        38 ~h~~L~~Gp~G~GKTtla~~la~~l~c~   65 (363)
T PRK14961         38 HHAWLLSGTRGVGKTTIARLLAKSLNCQ   65 (363)
T ss_pred             CeEEEEecCCCCCHHHHHHHHHHHhcCC
Confidence            3457899999999999999999998753

>PRK13768 GTPase; Provisional

Probab=96.36  E-value=0.0034  Score=55.33  Aligned_cols=25  Identities=24%  Similarity=0.280  Sum_probs=22.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++.+++.|++||||||++..++..+
T Consensus         2 ~~~i~v~G~~G~GKTt~~~~~~~~l   26 (253)
T PRK13768          2 MYIVFFLGTAGSGKTTLTKALSDWL   26 (253)
T ss_pred             cEEEEEECCCCccHHHHHHHHHHHH
Confidence            5688999999999999999999877

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=96.36  E-value=0.0026  Score=58.28  Aligned_cols=32  Identities=22%  Similarity=0.310  Sum_probs=25.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS   96 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~d   96 (273)
                      .+-.++|.||+||||||+-+.||   |+.-++.|+
T Consensus        28 ~Gef~vllGPSGcGKSTlLr~IA---GLe~~~~G~   59 (338)
T COG3839          28 DGEFVVLLGPSGCGKSTLLRMIA---GLEEPTSGE   59 (338)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHh---CCCCCCCce
Confidence            56789999999999999999998   454444433

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.36  E-value=0.0034  Score=52.54  Aligned_cols=27  Identities=15%  Similarity=0.238  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      .+..++|+|++||||||+.+.|+..+.
T Consensus        24 ~g~~i~I~G~tGSGKTTll~aL~~~i~   50 (186)
T cd01130          24 ARKNILISGGTGSGKTTLLNALLAFIP   50 (186)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            467899999999999999999988763

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>TIGR02012 tigrfam_recA protein RecA

Probab=96.35  E-value=0.006  Score=55.66  Aligned_cols=75  Identities=20%  Similarity=0.198  Sum_probs=45.1

Q ss_pred             hhhhchhhhhhccCCCcchhhcccCCCccchhcCCC---CCCCCCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCee
Q 024067           21 SRAYGSAAAAQLQYDYDEECDLHGQASEPMLRLDSA---GSPPRRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHI   92 (273)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~i   92 (273)
                      -..||..+.-.+. + .+.. -..+.+..+..+|..   |..| ++..+.|.|||||||||+|..++...     .+.+|
T Consensus        14 ~~~~g~~~~~~~~-~-~~~~-~~~~i~TGi~~LD~~Lg~GGlp-~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yI   89 (321)
T TIGR02012        14 EKQFGKGSIMRLG-E-KSVM-DVETISTGSLSLDLALGVGGLP-RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFI   89 (321)
T ss_pred             HHHcCcceeEECc-c-cccc-cCceecCCCHHHHHHhcCCCCc-CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence            4778887765433 1 1111 112333333333432   3333 78889999999999999999887655     24577


Q ss_pred             chhHHHH
Q 024067           93 SMGSLVR   99 (273)
Q Consensus        93 s~~dllr   99 (273)
                      ++.+-+.
T Consensus        90 d~E~~~~   96 (321)
T TIGR02012        90 DAEHALD   96 (321)
T ss_pred             cccchhH
Confidence            7654443

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=96.35  E-value=0.0039  Score=51.16  Aligned_cols=25  Identities=20%  Similarity=0.206  Sum_probs=22.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhC
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      ..|.|+|++||||||++.+|...+.
T Consensus         2 ~vi~i~G~~gsGKTTli~~L~~~l~   26 (159)
T cd03116           2 KVIGFVGYSGSGKTTLLEKLIPALS   26 (159)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5688999999999999999999873

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.35  E-value=0.03  Score=51.89  Aligned_cols=110  Identities=13%  Similarity=0.170  Sum_probs=60.4

Q ss_pred             CCCCCCeEEEEEcCCCCChhHHHHHHHHHh---CCC-eechhHHHHHHccCCChHHHHHHH-HHH-------CCCC-CCH
Q 024067           58 SPPRRGVQWVLIGDPGVKKHVYADNLSKLL---EVP-HISMGSLVRQELSPRSALYKQIAN-AVN-------EGKL-VPE  124 (273)
Q Consensus        58 ~~~~~~~~Ivi~G~pGSGKsT~a~~La~~~---g~~-~is~~dllr~~~~~~~~~g~~i~~-~l~-------~g~~-~~~  124 (273)
                      +...++-.|.+.|.-||||||.|..||-.|   |+. .+-..|..|.-     .+ .+++. ...       .+.. .|-
T Consensus        96 ~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRag-----Af-DQLkqnA~k~~iP~ygsyte~dpv  169 (483)
T KOG0780|consen   96 PKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAG-----AF-DQLKQNATKARVPFYGSYTEADPV  169 (483)
T ss_pred             cccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccc-----hH-HHHHHHhHhhCCeeEecccccchH
Confidence            334567789999999999999999999988   332 12222333321     01 11111 111       1111 122


Q ss_pred             HHHHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhh------CCCce-EEEEccCH
Q 024067          125 DVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI------VDVDL-VINFKSIE  177 (273)
Q Consensus       125 ~~~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~------~~~d~-vI~L~~~~  177 (273)
                      .+..+-+.. ....   +..-+|+|...|...+...+++.      ..||. ++.+|++-
T Consensus       170 ~ia~egv~~-fKke---~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasi  225 (483)
T KOG0780|consen  170 KIASEGVDR-FKKE---NFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASI  225 (483)
T ss_pred             HHHHHHHHH-HHhc---CCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccc
Confidence            222333322 3322   23567889888887777776643      46875 55566665

>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]

Probab=96.35  E-value=0.01  Score=53.13  Aligned_cols=52  Identities=19%  Similarity=0.381  Sum_probs=35.3

Q ss_pred             CCCCCCCCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeech--hHHHHHHccCCCh
Q 024067           54 DSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVRQELSPRSA  107 (273)
Q Consensus        54 ~~~~~~~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~--~dllr~~~~~~~~  107 (273)
                      +-.|-.|  |+=+++.|+||+|||-+|+.+|......++.+  .+|+.+.+-.+..
T Consensus       212 eemGikp--PKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpk  265 (440)
T KOG0726|consen  212 EEMGIKP--PKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPK  265 (440)
T ss_pred             HHcCCCC--CCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchH
Confidence            3334444  44577899999999999999999887665542  4555555444433

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=96.34  E-value=0.0027  Score=54.14  Aligned_cols=25  Identities=44%  Similarity=0.711  Sum_probs=20.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      +..++|.|+||+|||++|++|..-+
T Consensus        22 ~h~lLl~GppGtGKTmlA~~l~~lL   46 (206)
T PF01078_consen   22 GHHLLLIGPPGTGKTMLARRLPSLL   46 (206)
T ss_dssp             C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHhC
Confidence            4589999999999999999999875

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=96.33  E-value=0.0039  Score=63.18  Aligned_cols=33  Identities=27%  Similarity=0.403  Sum_probs=27.4

Q ss_pred             CCCe-EEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067           61 RRGV-QWVLIGDPGVKKHVYADNLSKLLEVPHIS   93 (273)
Q Consensus        61 ~~~~-~Ivi~G~pGSGKsT~a~~La~~~g~~~is   93 (273)
                      .+|. .++|+||||+|||++|+.||+.++.+++.
T Consensus       485 ~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~  518 (758)
T PRK11034        485 HKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLR  518 (758)
T ss_pred             CCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEE
Confidence            3443 58899999999999999999999876543

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=96.33  E-value=0.013  Score=58.94  Aligned_cols=28  Identities=21%  Similarity=0.343  Sum_probs=24.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~   90 (273)
                      +..++|+|++|+||||+++.|++.+++.
T Consensus        38 ~HAyLFtGPpGvGKTTlAriLAKaLnCe   65 (830)
T PRK07003         38 HHAYLFTGTRGVGKTTLSRIFAKALNCE   65 (830)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence            4557899999999999999999999864

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=96.33  E-value=0.0038  Score=55.94  Aligned_cols=26  Identities=27%  Similarity=0.365  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++..|+|+||+|+||||++..|+..+
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~~  218 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARF  218 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            56789999999999999999998866

>PTZ00202 tuzin; Provisional

Probab=96.32  E-value=0.023  Score=53.98  Aligned_cols=28  Identities=18%  Similarity=0.127  Sum_probs=24.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~   90 (273)
                      +.+++|+|++|+||||+++.+...++.+
T Consensus       286 privvLtG~~G~GKTTLlR~~~~~l~~~  313 (550)
T PTZ00202        286 PRIVVFTGFRGCGKSSLCRSAVRKEGMP  313 (550)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhcCCce
Confidence            4588999999999999999999888754

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=96.31  E-value=0.0034  Score=57.44  Aligned_cols=32  Identities=34%  Similarity=0.577  Sum_probs=27.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS   93 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is   93 (273)
                      .+..++|.|+||+|||++++.+|+.++.+++.
T Consensus        42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~   73 (329)
T COG0714          42 AGGHVLLEGPPGVGKTLLARALARALGLPFVR   73 (329)
T ss_pred             cCCCEEEECCCCccHHHHHHHHHHHhCCCeEE
Confidence            35678899999999999999999999876554

>KOG4622 consensus Predicted nucleotide kinase [General function prediction only]

Probab=96.31  E-value=0.15  Score=43.13  Aligned_cols=37  Identities=16%  Similarity=0.338  Sum_probs=28.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh------CCCeechhHHHHHH
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLL------EVPHISMGSLVRQE  101 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~------g~~~is~~dllr~~  101 (273)
                      .+.++|.|.+||||+|++|-...      .+.|++.||++...
T Consensus         3 LlaliGiPAaGKSs~c~~ilga~aaLrvrhi~hlcfDDFlmda   45 (291)
T KOG4622|consen    3 LLALIGIPAAGKSSFCRKILGAHAALRVRHIEHLCFDDFLMDA   45 (291)
T ss_pred             eeeeecCcccchhHHHHHHHHHHHHHHHHHHHhhhHHHHhhhc
Confidence            46789999999999999986544      24677788887543

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.30  E-value=0.0041  Score=59.79  Aligned_cols=31  Identities=29%  Similarity=0.237  Sum_probs=27.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCee
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHI   92 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~i   92 (273)
                      +..+.+|+||+|+||||..+.|++.+|+.++
T Consensus       109 ~~~iLLltGPsGcGKSTtvkvLskelg~~~~  139 (634)
T KOG1970|consen  109 GSRILLLTGPSGCGKSTTVKVLSKELGYQLI  139 (634)
T ss_pred             CceEEEEeCCCCCCchhHHHHHHHhhCceee
Confidence            3456779999999999999999999998765

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.30  E-value=0.0038  Score=58.10  Aligned_cols=27  Identities=30%  Similarity=0.434  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .++..++|+||+|+||||++.+|+..+
T Consensus       135 ~~g~ii~lvGptGvGKTTtiakLA~~~  161 (374)
T PRK14722        135 ERGGVFALMGPTGVGKTTTTAKLAARC  161 (374)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            467789999999999999999999864

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=96.28  E-value=0.0039  Score=63.51  Aligned_cols=32  Identities=25%  Similarity=0.423  Sum_probs=28.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS   93 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is   93 (273)
                      ++..++|+||||+||||+++.+++.++.+++.
T Consensus       348 ~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~  379 (784)
T PRK10787        348 KGPILCLVGPPGVGKTSLGQSIAKATGRKYVR  379 (784)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            56689999999999999999999999987654

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=96.28  E-value=0.0041  Score=49.90  Aligned_cols=24  Identities=17%  Similarity=0.112  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++|.|+|+.+|||||+++.|.+.+
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~~l   24 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLINEL   24 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            468899999999999999998877

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=96.27  E-value=0.0038  Score=51.62  Aligned_cols=27  Identities=22%  Similarity=0.345  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+|-.|.|+||+||||||+-+.+|...
T Consensus        27 ~~Ge~iaitGPSG~GKStllk~va~Li   53 (223)
T COG4619          27 RAGEFIAITGPSGCGKSTLLKIVASLI   53 (223)
T ss_pred             cCCceEEEeCCCCccHHHHHHHHHhcc
Confidence            467789999999999999999998754

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=96.26  E-value=0.0093  Score=57.56  Aligned_cols=35  Identities=11%  Similarity=0.160  Sum_probs=26.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH----h--CCCeechh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL----L--EVPHISMG   95 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~----~--g~~~is~~   95 (273)
                      .++..++|.|+|||||||+|..++-.    .  ++.||+..
T Consensus        19 p~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e   59 (484)
T TIGR02655        19 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE   59 (484)
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            37889999999999999999998432    2  34566643

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=96.24  E-value=0.0033  Score=54.32  Aligned_cols=33  Identities=18%  Similarity=0.252  Sum_probs=25.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS   96 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~d   96 (273)
                      .+..++|.|+||+||||+|+.|+.  ...+++.+.
T Consensus        11 ~~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~   43 (220)
T TIGR01618        11 IPNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDM   43 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHhcCC--CCEEEeccc
Confidence            356799999999999999999963  345565544

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=96.24  E-value=0.0033  Score=49.41  Aligned_cols=26  Identities=27%  Similarity=0.371  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-++.|+|+.||||||+.+.|+..+
T Consensus        10 ~g~~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   10 PGEIVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEEccCCCccccceeeecccc
Confidence            56789999999999999999998665

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.23  E-value=0.0041  Score=61.86  Aligned_cols=72  Identities=19%  Similarity=0.272  Sum_probs=50.9

Q ss_pred             hhchhhhhh--ccCCCcchhhc-------ccCCCccchhcCCCCCCCCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067           23 AYGSAAAAQ--LQYDYDEECDL-------HGQASEPMLRLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS   93 (273)
Q Consensus        23 ~~~~~~~~~--~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is   93 (273)
                      .|..+-.|.  ..+.|++--++       .+++--|.+--+.+++.-.+.-=|++.||||+|||-+|+.+|-++.+.++|
T Consensus       656 ~fs~aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlS  735 (953)
T KOG0736|consen  656 EFSDAIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLS  735 (953)
T ss_pred             hhhhhcCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEe
Confidence            344443332  45668765444       245556777667776554334458899999999999999999999999988


Q ss_pred             h
Q 024067           94 M   94 (273)
Q Consensus        94 ~   94 (273)
                      +
T Consensus       736 V  736 (953)
T KOG0736|consen  736 V  736 (953)
T ss_pred             e
Confidence            6

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=96.23  E-value=0.0047  Score=62.25  Aligned_cols=34  Identities=26%  Similarity=0.325  Sum_probs=28.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG   95 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~   95 (273)
                      +...++|.||||+||||+++.+++.++..++.+.
T Consensus        51 ~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~ln   84 (725)
T PRK13341         51 RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLN   84 (725)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhcCcceeeh
Confidence            3456789999999999999999999887665543

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.23  E-value=0.047  Score=52.61  Aligned_cols=34  Identities=24%  Similarity=0.322  Sum_probs=29.4

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS   93 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is   93 (273)
                      ..+-.-+++.||||||||++|..+|..-+||+|.
T Consensus       535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvK  568 (744)
T KOG0741|consen  535 RSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVK  568 (744)
T ss_pred             cCcceEEEEecCCCCChHHHHHHHHhhcCCCeEE
Confidence            3345678899999999999999999999999874

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=96.22  E-value=0.017  Score=59.18  Aligned_cols=28  Identities=21%  Similarity=0.274  Sum_probs=24.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~   90 (273)
                      +.-++|.|++|+||||+++.|++.+++.
T Consensus        37 ~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~   64 (824)
T PRK07764         37 NHAYLFSGPRGCGKTSSARILARSLNCV   64 (824)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCcc
Confidence            3457899999999999999999999864

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=96.22  E-value=0.011  Score=54.13  Aligned_cols=75  Identities=20%  Similarity=0.164  Sum_probs=44.0

Q ss_pred             hhhhhchhhhhhccCCCcchhhcccCCCccchhcCCC---CCCCCCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCe
Q 024067           20 RSRAYGSAAAAQLQYDYDEECDLHGQASEPMLRLDSA---GSPPRRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPH   91 (273)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~   91 (273)
                      ..+.||..+.-.+.-.  +.. -....+..+..+|..   |..| ++..+.|.|||||||||+|..++...     .+.+
T Consensus        13 i~~~~g~~~~~~~~~~--~~~-~~~~isTGi~~LD~~Lg~GGlp-~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vy   88 (325)
T cd00983          13 IEKKFGKGSIMKLGDD--AVQ-DVEVIPTGSLSLDIALGIGGYP-KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAF   88 (325)
T ss_pred             HHHHhCCcceEECccc--ccc-CCceecCCCHHHHHHhcCCCcc-CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence            3477887765443211  110 112223333333332   3344 77888899999999999999988654     2567


Q ss_pred             echhHHH
Q 024067           92 ISMGSLV   98 (273)
Q Consensus        92 is~~dll   98 (273)
                      |++.+-+
T Consensus        89 Id~E~~~   95 (325)
T cd00983          89 IDAEHAL   95 (325)
T ss_pred             ECccccH
Confidence            7764433

RecA couples ATP hydrolysis to DNA strand exchange.

>cd01394 radB RadB

Probab=96.21  E-value=0.0061  Score=52.10  Aligned_cols=35  Identities=29%  Similarity=0.284  Sum_probs=28.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCeechh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG   95 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~~   95 (273)
                      .++..+.|.|+|||||||+|..++...     .+.+++++
T Consensus        17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e   56 (218)
T cd01394          17 ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE   56 (218)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence            367889999999999999999999765     24466553

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=96.20  E-value=0.0047  Score=52.03  Aligned_cols=24  Identities=21%  Similarity=0.297  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ..|-|.||||||||++..++.+.+
T Consensus        14 ~~i~v~Gp~GSGKTaLie~~~~~L   37 (202)
T COG0378          14 LRIGVGGPPGSGKTALIEKTLRAL   37 (202)
T ss_pred             EEEEecCCCCcCHHHHHHHHHHHH
Confidence            788899999999999988776665

>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.20  E-value=0.0034  Score=57.56  Aligned_cols=47  Identities=23%  Similarity=0.282  Sum_probs=34.1

Q ss_pred             ccchhcCCCCCC--CCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           48 EPMLRLDSAGSP--PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        48 ~~~~~~~~~~~~--~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      -|..+-+.++-.  -..++-|++.||||+|||-+|+.+|++-|..+|++
T Consensus       110 lPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv  158 (386)
T KOG0737|consen  110 LPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINV  158 (386)
T ss_pred             hcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCccee
Confidence            444444555311  11345688999999999999999999999877664

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=96.20  E-value=0.0045  Score=59.92  Aligned_cols=29  Identities=24%  Similarity=0.287  Sum_probs=25.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCe
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPH   91 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~   91 (273)
                      +..++|+||||+||||+|+.||+.+++..
T Consensus        43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~   71 (507)
T PRK06645         43 AGGYLLTGIRGVGKTTSARIIAKAVNCSA   71 (507)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence            45789999999999999999999998753

>COG4240 Predicted kinase [General function prediction only]

Probab=96.19  E-value=0.0056  Score=52.89  Aligned_cols=39  Identities=21%  Similarity=0.249  Sum_probs=31.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh---C---CCeechhHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL---E---VPHISMGSLVR   99 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~---g---~~~is~~dllr   99 (273)
                      .+|.++.|+||-||||||++..|-..+   |   ...+|.||+.-
T Consensus        48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYl   92 (300)
T COG4240          48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYL   92 (300)
T ss_pred             CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhc
Confidence            468999999999999999998776554   2   45678888774

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=96.19  E-value=0.0038  Score=59.25  Aligned_cols=26  Identities=38%  Similarity=0.500  Sum_probs=23.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      +..|+|.|+||+|||++|+.|+..++
T Consensus       194 ~~~iil~GppGtGKT~lA~~la~~l~  219 (459)
T PRK11331        194 KKNIILQGPPGVGKTFVARRLAYLLT  219 (459)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhc
Confidence            56889999999999999999999885

>PRK06921 hypothetical protein; Provisional

Probab=96.19  E-value=0.0097  Score=52.92  Aligned_cols=38  Identities=21%  Similarity=0.180  Sum_probs=28.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh----C--CCeechhHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL----E--VPHISMGSLVR   99 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~----g--~~~is~~dllr   99 (273)
                      ....++|.|+||+|||+++..+++.+    |  +.+++..+++.
T Consensus       116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~  159 (266)
T PRK06921        116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFG  159 (266)
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHH
Confidence            35678999999999999999998865    2  24566555554

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.19  E-value=0.0045  Score=59.25  Aligned_cols=28  Identities=32%  Similarity=0.483  Sum_probs=25.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~   90 (273)
                      +..++|.||||+||||+|+.||+.+++.
T Consensus        40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce   67 (484)
T PRK14956         40 GHAYIFFGPRGVGKTTIARILAKRLNCE   67 (484)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence            4458999999999999999999999874

>TIGR00750 lao LAO/AO transport system ATPase

Probab=96.17  E-value=0.0053  Score=55.50  Aligned_cols=27  Identities=22%  Similarity=0.295  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .++..|.|+|+|||||||++..|+..+
T Consensus        32 ~~~~~i~i~G~~G~GKttl~~~l~~~~   58 (300)
T TIGR00750        32 GNAHRVGITGTPGAGKSTLLEALGMEL   58 (300)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            357888999999999999999998876

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=96.17  E-value=0.0046  Score=49.80  Aligned_cols=21  Identities=24%  Similarity=0.419  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 024067           65 QWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      +|+|+|+|||||||+..++..
T Consensus         2 ki~v~G~~~~GKTsli~~~~~   22 (164)
T smart00173        2 KLVVLGSGGVGKSALTIQFVQ   22 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            689999999999999999874

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=96.16  E-value=0.0054  Score=52.23  Aligned_cols=27  Identities=22%  Similarity=0.268  Sum_probs=24.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      .++.|.|+|++||||||+...+.+.++
T Consensus        21 ~~~~i~~~G~~gsGKTTli~~l~~~~~   47 (207)
T TIGR00073        21 GLVVLNFMSSPGSGKTTLIEKLIDNLK   47 (207)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            467899999999999999999998864

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=96.16  E-value=0.052  Score=49.45  Aligned_cols=99  Identities=16%  Similarity=0.255  Sum_probs=60.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh---CC-CeechhHHHHHHccCC-ChHHHHHHH-HHH-CCCCCCHHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EV-PHISMGSLVRQELSPR-SALYKQIAN-AVN-EGKLVPEDVIFALLSK  133 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~---g~-~~is~~dllr~~~~~~-~~~g~~i~~-~l~-~g~~~~~~~~~~ll~~  133 (273)
                      .+|..|+++|..|+||||...+||..|   |. +.+..+|-.|...-.. ...++.+.- ++. +....|-.++...++.
T Consensus       137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~  216 (340)
T COG0552         137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA  216 (340)
T ss_pred             CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence            468899999999999999999999998   33 4566777777532110 011111110 111 2233455566666655


Q ss_pred             HHHhcccCCcceEEEeCCCCCHHHHHHHHh
Q 024067          134 RLEEGYYRGESGFILDGIPRTRIQAEILDQ  163 (273)
Q Consensus       134 ~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~  163 (273)
                      +...    +..-+++|--.|-..+...|++
T Consensus       217 Akar----~~DvvliDTAGRLhnk~nLM~E  242 (340)
T COG0552         217 AKAR----GIDVVLIDTAGRLHNKKNLMDE  242 (340)
T ss_pred             HHHc----CCCEEEEeCcccccCchhHHHH
Confidence            5543    4567888877776666555544

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=96.15  E-value=0.0051  Score=55.64  Aligned_cols=29  Identities=17%  Similarity=0.114  Sum_probs=24.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCe
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPH   91 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~   91 (273)
                      +..+++.||||+||||+++.+++.++..+
T Consensus        43 ~~~lll~G~~G~GKT~la~~l~~~~~~~~   71 (316)
T PHA02544         43 PNMLLHSPSPGTGKTTVAKALCNEVGAEV   71 (316)
T ss_pred             CeEEEeeCcCCCCHHHHHHHHHHHhCccc
Confidence            44666689999999999999999886543

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=96.14  E-value=0.0049  Score=53.35  Aligned_cols=26  Identities=23%  Similarity=0.314  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .++-.+.|+||+||||||+-..|+--
T Consensus        29 ~~Ge~vaI~GpSGSGKSTLLniig~l   54 (226)
T COG1136          29 EAGEFVAIVGPSGSGKSTLLNLLGGL   54 (226)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            36788999999999999999988743

>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases

Probab=96.14  E-value=0.0035  Score=53.83  Aligned_cols=22  Identities=32%  Similarity=0.296  Sum_probs=20.3

Q ss_pred             EEEEcCCCCChhHHHHHHHHHh
Q 024067           66 WVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        66 Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      |+|.|+|||||||..+.+.+..
T Consensus         1 ~vv~G~pGsGKSt~i~~~~~~~   22 (234)
T PF01443_consen    1 IVVHGVPGSGKSTLIKKLLKDR   22 (234)
T ss_pred             CEEEcCCCCCHHHHHHHHHHhc
Confidence            5799999999999999999984

Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=96.13  E-value=0.0054  Score=53.65  Aligned_cols=26  Identities=27%  Similarity=0.363  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+.+++|+|++||||||+...|-..+
T Consensus        12 ~~fr~viIG~sGSGKT~li~~lL~~~   37 (241)
T PF04665_consen   12 DPFRMVIIGKSGSGKTTLIKSLLYYL   37 (241)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhh
Confidence            57799999999999999999887765

This is thought to be an ATPase involved in viral DNA packaging [].

>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.13  E-value=0.0038  Score=58.68  Aligned_cols=29  Identities=21%  Similarity=0.485  Sum_probs=25.9

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           66 WVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        66 Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      .+|.||||+||||....+|..+++-+.+.
T Consensus       238 YLLYGPPGTGKSS~IaAmAn~L~ydIydL  266 (457)
T KOG0743|consen  238 YLLYGPPGTGKSSFIAAMANYLNYDIYDL  266 (457)
T ss_pred             ceeeCCCCCCHHHHHHHHHhhcCCceEEe
Confidence            57999999999999999999999877654

>CHL00206 ycf2 Ycf2; Provisional

Probab=96.13  E-value=0.005  Score=66.83  Aligned_cols=37  Identities=19%  Similarity=0.311  Sum_probs=30.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeec--hhHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHIS--MGSLVR   99 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is--~~dllr   99 (273)
                      |.=|+++||||+|||.+|+.||...++|+|+  ..+++.
T Consensus      1630 PKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~ 1668 (2281)
T CHL00206       1630 SRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2281)
T ss_pred             CCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh
Confidence            4458899999999999999999999988755  566664

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=96.12  E-value=0.0052  Score=49.00  Aligned_cols=22  Identities=27%  Similarity=0.394  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .+|+|+|.||+||||+..++..
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~   23 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQ   23 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4789999999999999999975

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=96.10  E-value=0.0052  Score=51.40  Aligned_cols=26  Identities=35%  Similarity=0.461  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+-++.|+|+.||||||+.+.|+..+
T Consensus        17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        17 RGEVLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57789999999999999999998654

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.08  E-value=0.0052  Score=59.52  Aligned_cols=27  Identities=22%  Similarity=0.353  Sum_probs=24.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEV   89 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~   89 (273)
                      +..|+|+||||+||||+++.|++.+.+
T Consensus        36 ~ha~Lf~GppGtGKTTlA~~lA~~l~c   62 (504)
T PRK14963         36 GHAYLFSGPRGVGKTTTARLIAMAVNC   62 (504)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            456799999999999999999999865

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=96.08  E-value=0.0052  Score=49.34  Aligned_cols=23  Identities=17%  Similarity=0.332  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+|+|+|+||+||||+..+|...
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~   23 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEG   23 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhC
Confidence            37899999999999999999764

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=96.07  E-value=0.0052  Score=50.15  Aligned_cols=22  Identities=23%  Similarity=0.326  Sum_probs=20.4

Q ss_pred             EEEEcCCCCChhHHHHHHHHHh
Q 024067           66 WVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        66 Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      |.|+|++||||||++.+|.+.+
T Consensus         2 i~i~G~~gsGKTtl~~~l~~~l   23 (155)
T TIGR00176         2 LQIVGPKNSGKTTLIERLVKAL   23 (155)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999999999976

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=96.07  E-value=0.0054  Score=48.54  Aligned_cols=24  Identities=29%  Similarity=0.553  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      |.+|+++|++|+||||+...|...
T Consensus         1 ~~~i~l~G~~~~GKstli~~l~~~   24 (157)
T cd04164           1 GIKVVIVGKPNVGKSSLLNALAGR   24 (157)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCC
Confidence            468999999999999999988753

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK10646 ADP-binding protein; Provisional

Probab=96.07  E-value=0.0078  Score=48.98  Aligned_cols=28  Identities=21%  Similarity=0.283  Sum_probs=25.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEV   89 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~   89 (273)
                      .+..|++.|.-|+||||+++.|++.+|+
T Consensus        27 ~g~vi~L~GdLGaGKTtf~rgl~~~Lg~   54 (153)
T PRK10646         27 GATVIYLYGDLGAGKTTFSRGFLQALGH   54 (153)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            3568999999999999999999999987

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=96.07  E-value=0.0058  Score=61.91  Aligned_cols=38  Identities=29%  Similarity=0.475  Sum_probs=29.3

Q ss_pred             CCCCe-EEEEEcCCCCChhHHHHHHHHHhCCCe--echhHH
Q 024067           60 PRRGV-QWVLIGDPGVKKHVYADNLSKLLEVPH--ISMGSL   97 (273)
Q Consensus        60 ~~~~~-~Ivi~G~pGSGKsT~a~~La~~~g~~~--is~~dl   97 (273)
                      |.+|. .++|+||||+|||++|+.||+.++..+  +++.++
T Consensus       480 ~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~  520 (731)
T TIGR02639       480 PNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEY  520 (731)
T ss_pred             CCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchh
Confidence            34554 478999999999999999999997654  444443

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.06  E-value=0.034  Score=54.81  Aligned_cols=28  Identities=21%  Similarity=0.299  Sum_probs=24.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~   90 (273)
                      +..++|.||+|+||||+|+.||+.+++.
T Consensus        35 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~   62 (584)
T PRK14952         35 NHAYLFSGPRGCGKTSSARILARSLNCA   62 (584)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence            4457899999999999999999999864

>PHA02624 large T antigen; Provisional

Probab=96.06  E-value=0.0067  Score=59.40  Aligned_cols=33  Identities=18%  Similarity=0.267  Sum_probs=28.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      +...|+|.|||||||||+++.|.+.+|-..+++
T Consensus       430 Kk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsV  462 (647)
T PHA02624        430 KRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNV  462 (647)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEe
Confidence            455899999999999999999999997666664

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=96.06  E-value=0.0056  Score=52.10  Aligned_cols=26  Identities=23%  Similarity=0.204  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-++.|+|+.||||||+.+.|+..+
T Consensus        26 ~G~~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          26 AGEFVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            57789999999999999999998764

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd04136 Rap_like Rap-like subfamily

Probab=96.05  E-value=0.0058  Score=48.98  Aligned_cols=22  Identities=23%  Similarity=0.368  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .+|+|+|.||+||||+..++..
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~   23 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQ   23 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4799999999999999998874

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>PF13479 AAA_24: AAA domain

Probab=96.04  E-value=0.0043  Score=53.22  Aligned_cols=31  Identities=23%  Similarity=0.361  Sum_probs=24.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG   95 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~   95 (273)
                      ++.+++|.|+||+||||++..+   =+..+|+++
T Consensus         2 ~~~~~lIyG~~G~GKTt~a~~~---~k~l~id~E   32 (213)
T PF13479_consen    2 KPIKILIYGPPGSGKTTLAASL---PKPLFIDTE   32 (213)
T ss_pred             CceEEEEECCCCCCHHHHHHhC---CCeEEEEeC
Confidence            4678999999999999999988   344566653

>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]

Probab=96.03  E-value=0.013  Score=52.88  Aligned_cols=39  Identities=23%  Similarity=0.337  Sum_probs=30.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCe--echhHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPH--ISMGSLVRQE  101 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~--is~~dllr~~  101 (273)
                      |+.+.|.||||.|||-+|+.+++.+|+.+  ++++.++.+.
T Consensus       166 Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky  206 (388)
T KOG0651|consen  166 PKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY  206 (388)
T ss_pred             CceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence            55667899999999999999999998765  4455565543

>smart00175 RAB Rab subfamily of small GTPases

Probab=96.03  E-value=0.0055  Score=49.14  Aligned_cols=23  Identities=30%  Similarity=0.475  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+|+++|+|||||||+..+|...
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~   23 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDG   23 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            37899999999999999999743

Rab GTPases are implicated in vesicle trafficking.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.03  E-value=0.0058  Score=52.18  Aligned_cols=26  Identities=23%  Similarity=0.303  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-.+.|+|+.||||||+.+.|+..+
T Consensus        29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          29 KGEFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence            57789999999999999999998765

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=96.02  E-value=0.0058  Score=52.15  Aligned_cols=26  Identities=19%  Similarity=0.360  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+-++.|+|+.||||||+.+.|+..+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        28 KGEMVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57789999999999999999999765

>PRK05642 DNA replication initiation factor; Validated

Probab=96.02  E-value=0.0073  Score=52.60  Aligned_cols=36  Identities=14%  Similarity=0.153  Sum_probs=29.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh-----CCCeechhHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVR   99 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~~dllr   99 (273)
                      ..++|.|++|+|||.+++.++..+     .+.|++.++++.
T Consensus        46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~   86 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLD   86 (234)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHh
Confidence            457899999999999999988643     567888877764

>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=96.02  E-value=0.0055  Score=55.43  Aligned_cols=35  Identities=20%  Similarity=0.217  Sum_probs=31.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS   96 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~d   96 (273)
                      +-+.|||+|+.|||||-++-.||.+|+...|+.|.
T Consensus         6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDk   40 (348)
T KOG1384|consen    6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDK   40 (348)
T ss_pred             CceEEEEecCCCCChhhhHHHHHHhCCceeecccc
Confidence            55789999999999999999999999999998764

>PRK06835 DNA replication protein DnaC; Validated

Probab=96.02  E-value=0.0066  Score=55.64  Aligned_cols=37  Identities=19%  Similarity=0.285  Sum_probs=31.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh-----CCCeechhHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQ  100 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~~dllr~  100 (273)
                      ..++|.|++|+|||+++..+++.+     .+.++++.+++..
T Consensus       184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~  225 (329)
T PRK06835        184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEI  225 (329)
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHH
Confidence            568899999999999999999986     4567888777653

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=96.01  E-value=0.0048  Score=56.82  Aligned_cols=24  Identities=21%  Similarity=0.318  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      ++-.+.|.||+||||||+-+.||-
T Consensus        30 ~Gef~~lLGPSGcGKTTlLR~IAG   53 (352)
T COG3842          30 KGEFVTLLGPSGCGKTTLLRMIAG   53 (352)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            567889999999999999999994

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=96.01  E-value=0.0058  Score=51.88  Aligned_cols=23  Identities=22%  Similarity=0.287  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ..+|.||||+||||+...+...+
T Consensus        19 ~~~i~GpPGTGKT~~l~~~i~~~   41 (236)
T PF13086_consen   19 ITLIQGPPGTGKTTTLASIIAQL   41 (236)
T ss_dssp             -EEEE-STTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCChHHHHHHHHHHh
Confidence            67899999999997776666654

>PRK09354 recA recombinase A; Provisional

Probab=96.00  E-value=0.015  Score=53.70  Aligned_cols=122  Identities=16%  Similarity=0.148  Sum_probs=62.5

Q ss_pred             hhhhhchhhhhhccCCCcchhhcccCCCccchhcCC--C-CCCCCCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCe
Q 024067           20 RSRAYGSAAAAQLQYDYDEECDLHGQASEPMLRLDS--A-GSPPRRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPH   91 (273)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~   91 (273)
                      +-+.||..+.-.+.-....   -....+.-+..+|.  . |..| ++..+.|.|+|||||||+|..++...     .+.|
T Consensus        18 i~~~~g~~~~~~~~~~~~~---~~~~isTGi~~LD~~LG~GGip-~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~y   93 (349)
T PRK09354         18 IEKQFGKGSIMRLGDDAAM---DVEVISTGSLALDIALGIGGLP-RGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAF   93 (349)
T ss_pred             HHHHhCCCCceEccccccc---CCceecCCcHHHHHHhcCCCCc-CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence            3478988876553321000   11222333333333  2 3344 78888999999999999999987654     3567


Q ss_pred             echhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCcceEEEeCC
Q 024067           92 ISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGI  151 (273)
Q Consensus        92 is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~~g~IlDg~  151 (273)
                      |++..-+......  .+|-.+..++-. .+...+....++...+.+.   ...-+|||..
T Consensus        94 Id~E~s~~~~~a~--~lGvdld~lli~-qp~~~Eq~l~i~~~li~s~---~~~lIVIDSv  147 (349)
T PRK09354         94 IDAEHALDPVYAK--KLGVDIDNLLVS-QPDTGEQALEIADTLVRSG---AVDLIVVDSV  147 (349)
T ss_pred             ECCccchHHHHHH--HcCCCHHHeEEe-cCCCHHHHHHHHHHHhhcC---CCCEEEEeCh
Confidence            7765433321110  111112222211 1122334445555545443   2466899973

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=96.00  E-value=0.0066  Score=54.38  Aligned_cols=27  Identities=22%  Similarity=0.288  Sum_probs=24.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+..+|-|+|+||+||||+...|..+|
T Consensus        49 G~a~viGITG~PGaGKSTli~~L~~~l   75 (323)
T COG1703          49 GNAHVIGITGVPGAGKSTLIEALGREL   75 (323)
T ss_pred             CCCcEEEecCCCCCchHHHHHHHHHHH
Confidence            467789999999999999999999988

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=95.98  E-value=0.0065  Score=51.71  Aligned_cols=26  Identities=27%  Similarity=0.290  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-.+.|+|+.||||||+.+.|+..+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03301          25 DGEFVVLLGPSGCGKTTTLRMIAGLE   50 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            57789999999999999999999765

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=95.98  E-value=0.0065  Score=51.59  Aligned_cols=26  Identities=27%  Similarity=0.382  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+-++.|+|+.||||||+.+.|+..+
T Consensus        26 ~G~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          26 KGEFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            57789999999999999999998654

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=95.97  E-value=0.0061  Score=48.78  Aligned_cols=21  Identities=19%  Similarity=0.309  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 024067           65 QWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      +|+++|+||+||||+..+|..
T Consensus         2 ki~~~G~~~~GKTsl~~~l~~   22 (164)
T cd04139           2 KVIVVGAGGVGKSALTLQFMY   22 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            789999999999999998874

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=95.97  E-value=0.0041  Score=54.84  Aligned_cols=34  Identities=26%  Similarity=0.317  Sum_probs=27.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCeech
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISM   94 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~   94 (273)
                      .++..++|.|+||||||+++.+++...     .+.+|++
T Consensus        21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~   59 (260)
T COG0467          21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVST   59 (260)
T ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEe
Confidence            477889999999999999999887765     2456665

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=95.97  E-value=0.017  Score=57.32  Aligned_cols=55  Identities=22%  Similarity=0.260  Sum_probs=39.9

Q ss_pred             ccchhcCCCCCCCCC-CeEEEEEcCCCCChhHHHHHHHHHhCCCeech--hHHHHHHc
Q 024067           48 EPMLRLDSAGSPPRR-GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVRQEL  102 (273)
Q Consensus        48 ~~~~~~~~~~~~~~~-~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~--~dllr~~~  102 (273)
                      -|..+-..+...|-| +.-|++.||||+|||-++..+|..+++.+||+  -+++.+.+
T Consensus       685 ~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyI  742 (952)
T KOG0735|consen  685 WPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYI  742 (952)
T ss_pred             ccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHh
Confidence            344444444433433 34689999999999999999999999999986  35665544

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=95.97  E-value=0.023  Score=48.99  Aligned_cols=36  Identities=19%  Similarity=0.299  Sum_probs=28.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh-------CCCeechhHHHHH
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLL-------EVPHISMGSLVRQ  100 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~-------g~~~is~~dllr~  100 (273)
                      .++|.|++|+|||.+.+.++.++       .+.|++..++.+.
T Consensus        36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~   78 (219)
T PF00308_consen   36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIRE   78 (219)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHH
Confidence            47899999999999999998764       2457877776653

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=95.96  E-value=0.0065  Score=51.73  Aligned_cols=26  Identities=27%  Similarity=0.290  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+-++.|+|+.||||||+.+.|+..+
T Consensus        27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        27 KGEFLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57789999999999999999998654

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=95.96  E-value=0.006  Score=51.88  Aligned_cols=25  Identities=28%  Similarity=0.400  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++ ++.|+|+.||||||+.+.|+..+
T Consensus        25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          25 PG-MYGLLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             CC-cEEEECCCCCCHHHHHHHHhCCC
Confidence            36 89999999999999999998654

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=95.96  E-value=0.012  Score=57.08  Aligned_cols=34  Identities=18%  Similarity=0.293  Sum_probs=27.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh-----CCCeechh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG   95 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~~   95 (273)
                      ++..++|.|+||+|||+++..++...     .+.++++.
T Consensus       272 ~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e  310 (509)
T PRK09302        272 RGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFE  310 (509)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence            57788899999999999999987654     45666653

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=95.95  E-value=0.098  Score=46.65  Aligned_cols=26  Identities=23%  Similarity=0.231  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++..|+|+|++|+||||+...|+..+
T Consensus        74 ~~~~i~~~G~~g~GKTtl~~~l~~~l   99 (270)
T PRK06731         74 EVQTIALIGPTGVGKTTTLAKMAWQF   99 (270)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHH
Confidence            45799999999999999999998876

>cd00876 Ras Ras family

Probab=95.95  E-value=0.0054  Score=48.80  Aligned_cols=21  Identities=29%  Similarity=0.392  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 024067           65 QWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      +|+|+|++||||||+..+|..
T Consensus         1 ki~i~G~~~~GKTsli~~l~~   21 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVK   21 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHh
Confidence            488999999999999999864

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=95.95  E-value=0.0068  Score=51.49  Aligned_cols=26  Identities=19%  Similarity=0.336  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+-++.|+|+.||||||+.+.|+..+
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          25 KGEIFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            57789999999999999999999654

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=95.94  E-value=0.0041  Score=53.62  Aligned_cols=26  Identities=23%  Similarity=0.471  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .++-.++|.|+||+||||++..++..
T Consensus        18 ~~G~~~~i~G~~G~GKT~l~~~~~~~   43 (229)
T TIGR03881        18 PRGFFVAVTGEPGTGKTIFCLHFAYK   43 (229)
T ss_pred             cCCeEEEEECCCCCChHHHHHHHHHH
Confidence            36889999999999999999987643

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=95.94  E-value=0.0068  Score=51.83  Aligned_cols=26  Identities=27%  Similarity=0.360  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-.+.|+|+.||||||+.+.|+..+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (220)
T cd03263          27 KGEIFGLLGHNGAGKTTTLKMLTGEL   52 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            57789999999999999999998654

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=95.93  E-value=0.0062  Score=52.65  Aligned_cols=26  Identities=31%  Similarity=0.336  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+-++.|+|+.||||||+.+.|+..+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (236)
T cd03219          25 PGEIHGLIGPNGAGKTTLFNLISGFL   50 (236)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCCC
Confidence            57789999999999999999998654

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd04177 RSR1 RSR1 subgroup

Probab=95.93  E-value=0.0069  Score=49.24  Aligned_cols=22  Identities=23%  Similarity=0.368  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .+|+|+|.|||||||+..++.+
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~   23 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQ   23 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4789999999999999999864

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=95.93  E-value=0.007  Score=51.45  Aligned_cols=26  Identities=27%  Similarity=0.345  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-++.|+|+.||||||+.+.|+..+
T Consensus        25 ~G~~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          25 KGEVVVIIGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999998654

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=95.93  E-value=0.0069  Score=51.81  Aligned_cols=27  Identities=26%  Similarity=0.354  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .++-.+.|+|+.||||||+.+.|+..+
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          24 PEGEIVALLGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence            357899999999999999999998654

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=95.93  E-value=0.0091  Score=40.97  Aligned_cols=23  Identities=22%  Similarity=0.313  Sum_probs=19.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      +...+|+|+.||||||+-..+.-
T Consensus        23 g~~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   23 GDVTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            44788999999999999887754

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=95.92  E-value=0.0068  Score=52.54  Aligned_cols=27  Identities=30%  Similarity=0.350  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .++-++.|+|+.||||||+.+.|+..+
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (241)
T cd03256          25 NPGEFVALIGPSGAGKSTLLRCLNGLV   51 (241)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            367889999999999999999998654

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=95.92  E-value=0.0086  Score=51.65  Aligned_cols=27  Identities=19%  Similarity=0.185  Sum_probs=23.5

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ..++..+.|.|+||||||+++..++..
T Consensus        16 i~~g~i~~i~G~~GsGKT~l~~~l~~~   42 (235)
T cd01123          16 IETGSITEIFGEFGSGKTQLCHQLAVT   42 (235)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            347889999999999999999999844

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=95.92  E-value=0.0069  Score=51.19  Aligned_cols=26  Identities=23%  Similarity=0.454  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-++.|+|+.||||||+.+.|+..+
T Consensus        23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        23 KGKMYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            57789999999999999999998654

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd00157 Rho Rho (Ras homology) family

Probab=95.92  E-value=0.0068  Score=49.01  Aligned_cols=23  Identities=22%  Similarity=0.286  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ++|+|+|++|+||||+..+|...
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~   23 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTG   23 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhC
Confidence            47899999999999999999754

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=95.92  E-value=0.057  Score=47.11  Aligned_cols=91  Identities=23%  Similarity=0.299  Sum_probs=52.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh----CCCeechhHHH---HHH---cc-------CC------ChHHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL----EVPHISMGSLV---RQE---LS-------PR------SALYKQIANAVN  117 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~----g~~~is~~dll---r~~---~~-------~~------~~~g~~i~~~l~  117 (273)
                      .++-...|+||+||||||+-+.+.-.+    |-..|.-.++-   +.+   +.       ..      -...+-+.-.+.
T Consensus        32 ~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplr  111 (263)
T COG1127          32 PRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLR  111 (263)
T ss_pred             cCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehH
Confidence            368888999999999999999998765    22233222211   100   00       00      011122222233


Q ss_pred             CCCCCCHHHHHHHHHHHHHhcccCCcceEEEeCCCCC
Q 024067          118 EGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRT  154 (273)
Q Consensus       118 ~g~~~~~~~~~~ll~~~l~~~~~~~~~g~IlDg~P~~  154 (273)
                      +...+|+..+..++..+++.-   +-.+-+.|-||..
T Consensus       112 e~~~lp~~~i~~lv~~KL~~V---GL~~~~~~~~PsE  145 (263)
T COG1127         112 EHTKLPESLIRELVLMKLELV---GLRGAAADLYPSE  145 (263)
T ss_pred             hhccCCHHHHHHHHHHHHHhc---CCChhhhhhCchh
Confidence            334467788888888888763   3356667778865

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=95.92  E-value=0.0074  Score=43.65  Aligned_cols=22  Identities=41%  Similarity=0.508  Sum_probs=20.4

Q ss_pred             EEEEcCCCCChhHHHHHHHHHh
Q 024067           66 WVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        66 Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      +++.|.+|+||||++..|+..+
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l   23 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAAL   23 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999999999887

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=95.91  E-value=0.007  Score=52.40  Aligned_cols=26  Identities=31%  Similarity=0.408  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+-++.|+|+.||||||+.+.|+..+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          25 RGEILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57789999999999999999998654

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=95.91  E-value=0.0072  Score=51.46  Aligned_cols=26  Identities=23%  Similarity=0.279  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+-++.|+|+.||||||+.+.|+..+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03259          25 PGEFLALLGPSGCGKTTLLRLIAGLE   50 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            57789999999999999999998654

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=95.90  E-value=0.0076  Score=49.98  Aligned_cols=26  Identities=23%  Similarity=0.271  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-.+.|+|+.||||||+.+.|+..+
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (178)
T cd03229          25 AGEIVALLGPSGSGKSTLLRCIAGLE   50 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57789999999999999999998654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=95.90  E-value=0.0071  Score=56.31  Aligned_cols=28  Identities=18%  Similarity=0.196  Sum_probs=25.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEV   89 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~   89 (273)
                      +|..|.|+|++||||||++..|.+++.-
T Consensus         4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~~   31 (369)
T PRK14490          4 HPFEIAFCGYSGSGKTTLITALVRRLSE   31 (369)
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence            7889999999999999999999998863

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.90  E-value=0.0073  Score=61.66  Aligned_cols=28  Identities=25%  Similarity=0.306  Sum_probs=24.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~   90 (273)
                      +..++|+||||+||||+|+.|++.+++.
T Consensus        38 ~HAyLFtGPpGtGKTTLARiLAk~Lnce   65 (944)
T PRK14949         38 HHAYLFTGTRGVGKTSLARLFAKGLNCE   65 (944)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence            4456899999999999999999999875

>PRK11784 tRNA 2-selenouridine synthase; Provisional

Probab=95.90  E-value=0.042  Score=50.73  Aligned_cols=113  Identities=15%  Similarity=0.147  Sum_probs=69.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG  142 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~  142 (273)
                      ...+++.|+.|||||++...|.+. +...|+..++.+..   ++.+|..     . +..-+...+...|...+...  ..
T Consensus       141 ~~~ivl~G~TGsGKT~iL~~L~~~-~~~vlDlE~~aehr---GS~fG~~-----~-~~qpsQ~~Fe~~l~~~l~~~--~~  208 (345)
T PRK11784        141 FPLVVLGGNTGSGKTELLQALANA-GAQVLDLEGLANHR---GSSFGRL-----G-GPQPSQKDFENLLAEALLKL--DP  208 (345)
T ss_pred             CceEecCCCCcccHHHHHHHHHhc-CCeEEECCchhhhc---cccccCC-----C-CCCcchHHHHHHHHHHHHcC--CC
Confidence            345779999999999999999876 77889887776542   3333321     0 01112334556666666653  22


Q ss_pred             cceEEEeCCCCCHHHH----HHHHhhCCCceEEEEccCHHHHHHHHhcCC
Q 024067          143 ESGFILDGIPRTRIQA----EILDQIVDVDLVINFKSIEDQLVKRNLESE  188 (273)
Q Consensus       143 ~~g~IlDg~P~~~~qa----~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~  188 (273)
                      ...+++.+-.+.+...    ..++.+.. .-+|.+++|.+..++|+...-
T Consensus       209 ~~~i~vE~Es~~IG~~~lP~~l~~~m~~-~~~v~i~~~~e~Rv~~l~~~Y  257 (345)
T PRK11784        209 ARPIVVEDESRRIGRVHLPEALYEAMQQ-APIVVVEAPLEERVERLLEDY  257 (345)
T ss_pred             CCeEEEEeccccccCccCCHHHHHHHhh-CCEEEEECCHHHHHHHHHHHh
Confidence            4667777543332221    11222211 247899999999999997654

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=95.90  E-value=0.0077  Score=51.79  Aligned_cols=26  Identities=31%  Similarity=0.373  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+-.+.|+|+.||||||+.+.|+..+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          25 KGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            57889999999999999999999765

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=95.89  E-value=0.11  Score=48.82  Aligned_cols=29  Identities=24%  Similarity=0.497  Sum_probs=25.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~   90 (273)
                      .+.-++|.||||+||||+|..+|+.+.+.
T Consensus        35 l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~   63 (394)
T PRK07940         35 MTHAWLFTGPPGSGRSVAARAFAAALQCT   63 (394)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence            35568899999999999999999998664

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=95.89  E-value=0.0074  Score=51.64  Aligned_cols=26  Identities=23%  Similarity=0.302  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-++.|+|+.||||||+.+.|+..+
T Consensus        30 ~G~~~~i~G~nGsGKSTLl~~i~G~~   55 (221)
T TIGR02211        30 KGEIVAIVGSSGSGKSTLLHLLGGLD   55 (221)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            57789999999999999999998764

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type

Probab=95.89  E-value=0.097  Score=43.56  Aligned_cols=111  Identities=7%  Similarity=0.136  Sum_probs=65.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCC---CeechhHHHHHHccCCChHHHHHHHHHHCCCCC-----------------CH
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLLEV---PHISMGSLVRQELSPRSALYKQIANAVNEGKLV-----------------PE  124 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~g~---~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~-----------------~~  124 (273)
                      +|+|+|..+|||.|++..|.+.++.   ..++..+-+..+...  .+|..+...+..+..-                 ..
T Consensus         1 iilisGKrksGKD~~a~~l~~~l~~~~~~~vriS~piK~~~A~--~~gld~~~Ll~d~~YKE~~R~~mi~w~e~~r~~dp   78 (182)
T TIGR01223         1 VLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQ--EHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADP   78 (182)
T ss_pred             CEEEecCCCCChHHHHHHHHHhhccccceEEEecHHHHHHHHH--HhChhHHHhcCCcccchhhhHHHHHHHHHHHhhCc
Confidence            4789999999999999999999874   245555555444331  1122222222221110                 11


Q ss_pred             HHHHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhC-CCceEEEEccCHHHHHHHH
Q 024067          125 DVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIV-DVDLVINFKSIEDQLVKRN  184 (273)
Q Consensus       125 ~~~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~-~~d~vI~L~~~~e~l~~Rl  184 (273)
                      +.+++.+...+      ....|||++. |...+...|.+.. .--+.|-+.+++++..+|.
T Consensus        79 ~~F~r~~~~~~------~~~v~iIsD~-Rr~~dv~~f~~~~g~~~~~VRV~AseetR~~Rg  132 (182)
T TIGR01223        79 GFFCRKIVEGI------SQPIWLVSDT-RRVSDIQWFREAYGAVTQTVRVVALEQSRQQRG  132 (182)
T ss_pred             cHHHHHHHhcc------CCCEEEEeCC-CcccHHHHHHHHcCCceEEEEEecCHHHHHHHH
Confidence            23333332211      2357788876 4445566665443 3346899999999998887

This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).

>cd00154 Rab Rab family

Probab=95.88  E-value=0.0066  Score=47.82  Aligned_cols=22  Identities=36%  Similarity=0.460  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .+|+++|+|||||||+...|..
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~   22 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVD   22 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999998853

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=95.88  E-value=0.011  Score=50.79  Aligned_cols=35  Identities=26%  Similarity=0.234  Sum_probs=28.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCeechh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG   95 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~~   95 (273)
                      .++..+.|.|+||+|||++|..++...     .+.++++.
T Consensus        21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e   60 (225)
T PRK09361         21 ERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE   60 (225)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence            468899999999999999999998644     35677664

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=95.88  E-value=0.0074  Score=52.11  Aligned_cols=27  Identities=22%  Similarity=0.346  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ..+-.+.|+|+.||||||+.+.|+..+
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   55 (233)
T cd03258          29 PKGEIFGIIGRSGAGKSTLIRCINGLE   55 (233)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            357899999999999999999999765

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd04113 Rab4 Rab4 subfamily

Probab=95.88  E-value=0.0072  Score=48.55  Aligned_cols=22  Identities=18%  Similarity=0.498  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .+|+|+|++|+||||+..+|..
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~   22 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVE   22 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3789999999999999999864

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=95.88  E-value=0.0079  Score=47.04  Aligned_cols=23  Identities=30%  Similarity=0.520  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+|+|+|.+||||||+...|...
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~   24 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGN   24 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            57999999999999999988754

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=95.87  E-value=0.007  Score=60.41  Aligned_cols=30  Identities=23%  Similarity=0.515  Sum_probs=27.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      -|+|.||||+||||+++.+++.++++++..
T Consensus       187 gill~G~~G~GKt~~~~~~a~~~~~~f~~i  216 (644)
T PRK10733        187 GVLMVGPPGTGKTLLAKAIAGEAKVPFFTI  216 (644)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            488999999999999999999999887654

>cd01862 Rab7 Rab7 subfamily

Probab=95.87  E-value=0.0068  Score=49.06  Aligned_cols=23  Identities=22%  Similarity=0.462  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+|+|+|++||||||+..+|...
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~   23 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNK   23 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            37899999999999999988653

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.87  E-value=0.008  Score=58.66  Aligned_cols=27  Identities=26%  Similarity=0.373  Sum_probs=23.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEV   89 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~   89 (273)
                      +..++|.||||+||||+|+.||+.+++
T Consensus        38 ~ha~Lf~Gp~GvGKTTlAr~lAk~L~c   64 (546)
T PRK14957         38 HHAYLFTGTRGVGKTTLGRLLAKCLNC   64 (546)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            345789999999999999999999875

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=95.86  E-value=0.008  Score=49.73  Aligned_cols=25  Identities=16%  Similarity=0.405  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .+..+|+++|++||||||+..+|..
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~   36 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKN   36 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHS
T ss_pred             CcEEEEEEECCCccchHHHHHHhhh
Confidence            5678999999999999999999974

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=95.86  E-value=0.0074  Score=52.43  Aligned_cols=26  Identities=23%  Similarity=0.277  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .++.++|.||||.||||-...||..+
T Consensus        47 nmP~liisGpPG~GKTTsi~~LAr~L   72 (333)
T KOG0991|consen   47 NMPNLIISGPPGTGKTTSILCLAREL   72 (333)
T ss_pred             CCCceEeeCCCCCchhhHHHHHHHHH
Confidence            46789999999999999999999876

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=95.86  E-value=0.0076  Score=52.36  Aligned_cols=27  Identities=22%  Similarity=0.367  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ..+-.+.|+|+.||||||+.+.|+..+
T Consensus        26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   52 (243)
T TIGR02315        26 NPGEFVAIIGPSGAGKSTLLRCINRLV   52 (243)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            357789999999999999999998654

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=95.85  E-value=0.0076  Score=51.05  Aligned_cols=26  Identities=31%  Similarity=0.379  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+-++.|+|+.||||||+.+.|+..+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          25 AGEIIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            57789999999999999999998654

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.85  E-value=0.0078  Score=57.97  Aligned_cols=28  Identities=29%  Similarity=0.337  Sum_probs=24.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~   90 (273)
                      +..++|.||||+||||+|+.||+.+++.
T Consensus        35 ~ha~Lf~Gp~G~GKTT~ArilAk~LnC~   62 (491)
T PRK14964         35 PQSILLVGASGVGKTTCARIISLCLNCS   62 (491)
T ss_pred             CceEEEECCCCccHHHHHHHHHHHHcCc
Confidence            4578999999999999999999988764

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.85  E-value=0.008  Score=50.57  Aligned_cols=26  Identities=12%  Similarity=0.148  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+-++.|+|++||||||+.+.|+..+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (195)
T PRK13541         25 PSAITYIKGANGCGKSSLLRMIAGIM   50 (195)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            56789999999999999999998764

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.85  E-value=0.0082  Score=56.44  Aligned_cols=28  Identities=25%  Similarity=0.356  Sum_probs=24.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~   90 (273)
                      +.-++|.||||+||||+|..+|+.+.+.
T Consensus        38 ~ha~lf~Gp~G~GKtt~A~~~a~~l~c~   65 (397)
T PRK14955         38 GHGYIFSGLRGVGKTTAARVFAKAVNCQ   65 (397)
T ss_pred             ceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            3458899999999999999999999874

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=95.85  E-value=0.0081  Score=49.76  Aligned_cols=26  Identities=27%  Similarity=0.362  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+-++.|+|+.||||||+.+.|+..+
T Consensus        27 ~Ge~~~i~G~nGsGKStLl~~l~G~~   52 (178)
T cd03247          27 QGEKIALLGRSGSGKSTLLQLLTGDL   52 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccC
Confidence            57789999999999999999998654

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=95.84  E-value=0.0082  Score=49.54  Aligned_cols=26  Identities=27%  Similarity=0.400  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-.+.|+|+.||||||+.+.|+..+
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (173)
T cd03230          25 KGEIYGLLGPNGAGKTTLIKIILGLL   50 (173)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            57789999999999999999998654

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.84  E-value=0.008  Score=52.49  Aligned_cols=27  Identities=19%  Similarity=0.281  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .++-.+.|+||+||||||+-+.+|-..
T Consensus        27 ~~GEfvsilGpSGcGKSTLLriiAGL~   53 (248)
T COG1116          27 EKGEFVAILGPSGCGKSTLLRLIAGLE   53 (248)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            367789999999999999999998544

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=95.84  E-value=0.009  Score=53.65  Aligned_cols=25  Identities=20%  Similarity=0.216  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ...|-|+|+|||||||+...|.+.+
T Consensus       104 ~~~v~l~G~pGsGKTTLl~~l~~~l  128 (290)
T PRK10463        104 QLVLNLVSSPGSGKTTLLTETLMRL  128 (290)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            5677899999999999999988876

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=95.83  E-value=0.0085  Score=53.04  Aligned_cols=26  Identities=15%  Similarity=0.183  Sum_probs=23.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      +..|+|+|++||||||+...|.+.+.
T Consensus       127 ~~~ili~G~tGSGKTT~l~all~~i~  152 (270)
T PF00437_consen  127 RGNILISGPTGSGKTTLLNALLEEIP  152 (270)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHHCH
T ss_pred             ceEEEEECCCccccchHHHHHhhhcc
Confidence            57899999999999999999998773

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional

Probab=95.83  E-value=0.0085  Score=53.52  Aligned_cols=24  Identities=17%  Similarity=0.209  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      +.|.|+|++||||||++..|+..+
T Consensus         2 ~~i~i~G~~gSGKTTLi~~Li~~L   25 (274)
T PRK14493          2 KVLSIVGYKATGKTTLVERLVDRL   25 (274)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHH
Confidence            468899999999999999999988

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=95.83  E-value=0.0079  Score=52.24  Aligned_cols=26  Identities=23%  Similarity=0.263  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-++.|+|+.||||||+.+.|+..+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (239)
T cd03296          27 SGELVALLGPSGSGKTTLLRLIAGLE   52 (239)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57789999999999999999998765

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=95.83  E-value=0.0078  Score=49.73  Aligned_cols=28  Identities=25%  Similarity=0.444  Sum_probs=24.2

Q ss_pred             CCCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           59 PPRRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        59 ~~~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+.+...|+|+|.+|+||||+..+|...
T Consensus        14 ~~~~~~~i~ivG~~~~GKStlin~l~~~   41 (179)
T TIGR03598        14 PPDDGPEIAFAGRSNVGKSSLINALTNR   41 (179)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            3467789999999999999999998764

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=95.82  E-value=0.008  Score=55.38  Aligned_cols=26  Identities=23%  Similarity=0.277  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+..++|.||||+|||++++.+.+.+
T Consensus        39 ~~~~i~I~G~~GtGKT~l~~~~~~~l   64 (365)
T TIGR02928        39 RPSNVFIYGKTGTGKTAVTKYVMKEL   64 (365)
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            45678999999999999999998865

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=95.82  E-value=0.0077  Score=51.59  Aligned_cols=26  Identities=23%  Similarity=0.279  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-++.|+|+.||||||+.+.|+..+
T Consensus        29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~   54 (220)
T cd03293          29 EGEFVALVGPSGCGKSTLLRIIAGLE   54 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            57789999999999999999998654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=95.82  E-value=0.008  Score=50.51  Aligned_cols=25  Identities=28%  Similarity=0.381  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ++-++.|+|++||||||+.+.|+..
T Consensus        32 ~Ge~~~l~G~nGsGKSTLl~~l~G~   56 (192)
T cd03232          32 PGTLTALMGESGAGKTTLLDVLAGR   56 (192)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            5778999999999999999999853

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=95.82  E-value=0.0074  Score=51.39  Aligned_cols=26  Identities=23%  Similarity=0.344  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+-++.|+|+.||||||+.+.|+..+
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   49 (213)
T cd03235          24 PGEFLAIVGPNGAGKSTLLKAILGLL   49 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            57789999999999999999998654

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=95.81  E-value=0.0087  Score=52.72  Aligned_cols=29  Identities=10%  Similarity=0.292  Sum_probs=25.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV   89 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~   89 (273)
                      .++-+++|+|++|+||||+++.+++.+..
T Consensus        14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~   42 (249)
T cd01128          14 GKGQRGLIVAPPKAGKTTLLQSIANAITK   42 (249)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence            47889999999999999999999987754

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=95.81  E-value=0.0082  Score=51.93  Aligned_cols=26  Identities=23%  Similarity=0.304  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+-++.|+|+.||||||+.+.|+..+
T Consensus        34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   59 (233)
T PRK11629         34 EGEMMAIVGSSGSGKSTLLHLLGGLD   59 (233)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            56789999999999999999998754

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=95.80  E-value=0.0095  Score=52.70  Aligned_cols=33  Identities=9%  Similarity=0.078  Sum_probs=27.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh-----CCCeech
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISM   94 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~   94 (273)
                      ++..++|.|+||+||||+|..++...     .+.|+++
T Consensus        35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~   72 (259)
T TIGR03878        35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV   72 (259)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence            67889999999999999999987643     3566765

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

Probab=95.80  E-value=0.028  Score=54.33  Aligned_cols=28  Identities=29%  Similarity=0.382  Sum_probs=25.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCe
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPH   91 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~   91 (273)
                      .-.++.||-|+||||+|+.+|+.+++..
T Consensus        39 hAYlfsG~RGvGKTt~Ari~AkalNC~~   66 (515)
T COG2812          39 HAYLFSGPRGVGKTTIARILAKALNCEN   66 (515)
T ss_pred             hhhhhcCCCCcCchhHHHHHHHHhcCCC
Confidence            3467999999999999999999999875

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=95.80  E-value=0.008  Score=51.59  Aligned_cols=27  Identities=30%  Similarity=0.492  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .++-++.|+|+.||||||+.+.|+..+
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   55 (228)
T cd03257          29 KKGETLGLVGESGSGKSTLARAILGLL   55 (228)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            367899999999999999999998655

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=95.80  E-value=0.0083  Score=49.25  Aligned_cols=22  Identities=14%  Similarity=0.212  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .+|+|+|.||+||||+..++..
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~   23 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVE   23 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4789999999999999998874

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.80  E-value=0.082  Score=52.46  Aligned_cols=28  Identities=25%  Similarity=0.347  Sum_probs=24.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~   90 (273)
                      +..++|.|++|+||||+++.|++.+++.
T Consensus        38 ~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~   65 (618)
T PRK14951         38 HHAYLFTGTRGVGKTTVSRILAKSLNCQ   65 (618)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            4567899999999999999999999863

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=95.80  E-value=0.009  Score=49.29  Aligned_cols=27  Identities=30%  Similarity=0.385  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .++-.+.|+|+.||||||+.+.|+..+
T Consensus        26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~   52 (173)
T cd03246          26 EPGESLAIIGPSGSGKSTLARLILGLL   52 (173)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            357789999999999999999998654

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.80  E-value=0.0092  Score=59.19  Aligned_cols=28  Identities=29%  Similarity=0.370  Sum_probs=25.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~   90 (273)
                      +..++|.||||+||||+|+.||+.+++.
T Consensus        37 ~HAyLF~GPpGvGKTTlAriLAK~LnC~   64 (702)
T PRK14960         37 HHAYLFTGTRGVGKTTIARILAKCLNCE   64 (702)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            4577899999999999999999999874

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=95.80  E-value=0.0086  Score=51.29  Aligned_cols=26  Identities=35%  Similarity=0.479  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+-++.|+|+.||||||+.+.|+..+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (220)
T cd03265          25 RGEIFGLLGPNGAGKTTTIKMLTTLL   50 (220)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57789999999999999999998654

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase

Probab=95.80  E-value=0.9  Score=43.93  Aligned_cols=33  Identities=15%  Similarity=0.157  Sum_probs=28.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS   93 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is   93 (273)
                      ..++.|++.|..+|||+...++|.+.++=..+.
T Consensus       297 ~~~vlivfeG~DaAGKgg~I~rl~~~ldPrg~~  329 (493)
T TIGR03708       297 KRSLVLVFEGWDAAGKGGAIRRVTEALDARQYR  329 (493)
T ss_pred             CCCEEEEEEcccCCCCcHHHHHHHhhcCCCeeE
Confidence            468999999999999999999999998644443

Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=95.79  E-value=0.009  Score=49.06  Aligned_cols=26  Identities=23%  Similarity=0.332  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+-++.|+|+.||||||+.+.|+..+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (166)
T cd03223          26 PGDRLLITGPSGTGKSSLFRALAGLW   51 (166)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            57789999999999999999998654

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=95.79  E-value=0.0085  Score=52.33  Aligned_cols=26  Identities=23%  Similarity=0.256  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-++.|+|+.||||||+.+.|+..+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (250)
T PRK11264         28 PGEVVAIIGPSGSGKTTLLRCINLLE   53 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            57789999999999999999998654

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=95.79  E-value=0.0086  Score=51.92  Aligned_cols=26  Identities=27%  Similarity=0.341  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+-++.|+|+.||||||+.+.|+..+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (236)
T TIGR03864        26 PGEFVALLGPNGAGKSTLFSLLTRLY   51 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            57899999999999999999998654

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd01895 EngA2 EngA2 subfamily

Probab=95.78  E-value=0.008  Score=48.28  Aligned_cols=24  Identities=25%  Similarity=0.372  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      +.+|+++|.+|+||||+..+|...
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~   25 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGE   25 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCc
Confidence            568999999999999999999754

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=95.78  E-value=0.0086  Score=52.12  Aligned_cols=26  Identities=31%  Similarity=0.422  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      +|-.+-|+|++||||||+++.|+-..
T Consensus        32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~   57 (252)
T COG1124          32 RGETLGIVGESGSGKSTLARLLAGLE   57 (252)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence            57788899999999999999998543

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=95.78  E-value=0.012  Score=47.54  Aligned_cols=29  Identities=31%  Similarity=0.377  Sum_probs=26.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV   89 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~   89 (273)
                      ..+..|++.|.-||||||+++-|++.+|.
T Consensus        23 ~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~   51 (149)
T COG0802          23 KAGDVVLLSGDLGAGKTTLVRGIAKGLGV   51 (149)
T ss_pred             CCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence            35789999999999999999999999985

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=95.78  E-value=0.0084  Score=51.68  Aligned_cols=26  Identities=31%  Similarity=0.431  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-++.|+|+.||||||+.+.|+..+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (230)
T TIGR03410        25 KGEVTCVLGRNGVGKTTLLKTLMGLL   50 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            67899999999999999999999765

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=95.78  E-value=0.056  Score=51.63  Aligned_cols=36  Identities=11%  Similarity=0.243  Sum_probs=29.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh-----C--CCeechhHHHHH
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLL-----E--VPHISMGSLVRQ  100 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~-----g--~~~is~~dllr~  100 (273)
                      -++|.|+||+|||++++.++.++     +  +.+++..+++.+
T Consensus       150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~  192 (450)
T PRK00149        150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTND  192 (450)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH
Confidence            47899999999999999999886     2  457787776543

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=95.77  E-value=0.0091  Score=55.65  Aligned_cols=26  Identities=23%  Similarity=0.382  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+..++|.|+||+|||++++.+++.+
T Consensus        54 ~~~~~lI~G~~GtGKT~l~~~v~~~l   79 (394)
T PRK00411         54 RPLNVLIYGPPGTGKTTTVKKVFEEL   79 (394)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            45568899999999999999999876

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=95.77  E-value=0.0082  Score=52.55  Aligned_cols=26  Identities=23%  Similarity=0.313  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-+++|+|++||||||+.+.|+..+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (253)
T TIGR02323        28 PGEVLGIVGESGSGKSTLLGCLAGRL   53 (253)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999999765

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=95.77  E-value=0.009  Score=50.65  Aligned_cols=27  Identities=19%  Similarity=0.357  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .++-.+.|+|+.||||||+.+.|+..+
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~   50 (208)
T cd03268          24 KKGEIYGFLGPNGAGKTTTMKIILGLI   50 (208)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            357889999999999999999998654

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=95.76  E-value=0.0089  Score=51.56  Aligned_cols=26  Identities=23%  Similarity=0.207  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+-++.|+|+.||||||+.+.|+..+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (232)
T cd03218          25 QGEIVGLLGPNGAGKTTTFYMIVGLV   50 (232)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            57789999999999999999998654

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.76  E-value=0.0087  Score=52.13  Aligned_cols=26  Identities=19%  Similarity=0.496  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+-++.|+|+.||||||+.+.|+..+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (241)
T PRK14250         28 GGAIYTIVGPSGAGKSTLIKLINRLI   53 (241)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57789999999999999999999765

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=95.76  E-value=0.0088  Score=49.76  Aligned_cols=26  Identities=23%  Similarity=0.110  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-.+.|+|+.||||||+.+.|+..+
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (182)
T cd03215          25 AGEIVGIAGLVGNGQTELAEALFGLR   50 (182)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            57789999999999999999998765

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.76  E-value=0.0092  Score=50.41  Aligned_cols=27  Identities=26%  Similarity=0.263  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .++-++.|+|+.||||||+.+.|+..+
T Consensus        25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~   51 (200)
T PRK13540         25 PAGGLLHLKGSNGAGKTTLLKLIAGLL   51 (200)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            367899999999999999999998654

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=95.76  E-value=0.021  Score=53.27  Aligned_cols=34  Identities=24%  Similarity=0.243  Sum_probs=28.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC-------CCeechh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLE-------VPHISMG   95 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g-------~~~is~~   95 (273)
                      .+.+|.|+||.|+||||...+||.+|.       +-.|++|
T Consensus       202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtD  242 (407)
T COG1419         202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTD  242 (407)
T ss_pred             cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEec
Confidence            377889999999999999999999885       3456664

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=95.76  E-value=0.045  Score=54.13  Aligned_cols=29  Identities=28%  Similarity=0.322  Sum_probs=25.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCe
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPH   91 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~   91 (273)
                      +.-++|+||+|+||||+|+.||+.+++..
T Consensus        46 ~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~   74 (598)
T PRK09111         46 AQAFMLTGVRGVGKTTTARILARALNYEG   74 (598)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhhCcCC
Confidence            45689999999999999999999998753

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=95.75  E-value=0.0095  Score=49.49  Aligned_cols=27  Identities=26%  Similarity=0.343  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .++-++.|+|+.||||||+.+.|+..+
T Consensus        23 ~~G~~~~l~G~nGsGKStLl~~i~G~~   49 (180)
T cd03214          23 EAGEIVGILGPNGAGKSTLLKTLAGLL   49 (180)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            367899999999999999999998754

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=95.75  E-value=0.0091  Score=51.44  Aligned_cols=26  Identities=19%  Similarity=0.298  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-.+.|+|+.||||||+.+.|+..+
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   57 (225)
T PRK10247         32 AGEFKLITGPSGCGKSTLLKIVASLI   57 (225)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            57789999999999999999998654

>cd00879 Sar1 Sar1 subfamily

Probab=95.75  E-value=0.009  Score=49.56  Aligned_cols=24  Identities=13%  Similarity=0.198  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      +..+|+|+|++||||||+..+|..
T Consensus        18 ~~~ki~ilG~~~~GKStLi~~l~~   41 (190)
T cd00879          18 KEAKILFLGLDNAGKTTLLHMLKD   41 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            567889999999999999999874

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=95.75  E-value=0.009  Score=51.16  Aligned_cols=26  Identities=19%  Similarity=0.157  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+-.+.|+|+.||||||+.+.|+..+
T Consensus        12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~   37 (213)
T PRK15177         12 YHEHIGILAAPGSGKTTLTRLLCGLD   37 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            57789999999999999999998654

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=95.75  E-value=0.0088  Score=49.92  Aligned_cols=27  Identities=22%  Similarity=0.279  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ..+-++.|+|+.||||||+.+.|+..+
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          23 KEGEVIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            357799999999999999999998754

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.74  E-value=0.0085  Score=52.31  Aligned_cols=27  Identities=33%  Similarity=0.459  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .++-.++|+|++||||||+.+.|+--+
T Consensus        28 ~~Ge~~~i~G~nGsGKSTL~~~l~GLl   54 (235)
T COG1122          28 EKGERVLLIGPNGSGKSTLLKLLNGLL   54 (235)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHcCcC
Confidence            357799999999999999999998654

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=95.74  E-value=0.0092  Score=54.00  Aligned_cols=25  Identities=20%  Similarity=0.307  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ...|+|+|++||||||+.+.|...+
T Consensus       132 ~~~ilI~G~tGSGKTTll~al~~~i  156 (299)
T TIGR02782       132 RKNILVVGGTGSGKTTLANALLAEI  156 (299)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4578899999999999999999876

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>TIGR02236 recomb_radA DNA repair and recombination protein RadA

Probab=95.73  E-value=0.01  Score=53.75  Aligned_cols=25  Identities=16%  Similarity=0.097  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+..+.|+|+|||||||+|..++-.
T Consensus        94 ~g~i~ei~G~~g~GKT~l~~~~~~~  118 (310)
T TIGR02236        94 TQAITEVFGEFGSGKTQICHQLAVN  118 (310)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            6788889999999999999999865

This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	273
1ak2_A	233	Adenylate Kinase Isoenzyme-2 Length = 233		3e-17
2c9y_A	242	Structure Of Human Adenylate Kinase 2 Length = 242		8e-16
3fb4_A	216	Crystal Structure Of Adenylate Kinase From Mariniba		4e-13
3hpr_A	214	Crystal Structure Of V148g Adenylate Kinase From E.		2e-12
1aky_A	220	High-Resolution Structures Of Adenylate Kinase From		2e-12
1s3g_A	217	Crystal Structure Of Adenylate Kinase From Bacillus		3e-12
1ake_A	214	Structure Of The Complex Between Adenylate Kinase F		4e-12
3aky_A	220	Stability, Activity And Structure Of Adenylate Kina		4e-12
1zin_A	217	Adenylate Kinase With Bound Ap5a Length = 217		1e-11
1uky_A	203	Substrate Specificity And Assembly Of Catalytic Cen		2e-11
3tlx_A	243	Crystal Structure Of Pf10_0086, Adenylate Kinase Fr		3e-11
2ar7_A	246	Crystal Structure Of Human Adenylate Kinase 4, Ak4		3e-11
3ndp_A	231	Crystal Structure Of Human Ak4(L171p) Length = 231		4e-11
1dvr_A	220	Structure Of A Mutant Adenylate Kinase Ligated With		4e-11
1e4v_A	214	Mutant G10v Of Adenylate Kinase From E. Coli, Modif		5e-11
2cdn_A	201	Crystal Structure Of Mycobacterium Tuberculosis Ade		9e-11
2ak3_A	226	The Three-Dimensional Structure Of The Complex Betw		1e-10
1p4s_A	181	Solution Structure Of Mycobacterium Tuberculosis Ad		1e-10
3dl0_A	216	Crystal Structure Of Adenylate Kinase Variant Aklse		3e-10
2osb_A	216	Crystal Structure Of A Thermostable Mutant Of Bacil		4e-10
1p3j_A	217	Adenylate Kinase From Bacillus Subtilis Length = 21		4e-10
2qaj_A	217	Crystal Structure Of A Thermostable Mutant Of Bacil		4e-10
2p3s_A	217	Crystal Structure Of A Thermostable Mutant Of Bacil		4e-10
2eu8_A	216	Crystal Structure Of A Thermostable Mutant Of Bacil		4e-10
2rgx_A	206	Crystal Structure Of Adenylate Kinase From Aquifex		4e-10
2oo7_A	217	Crystal Structure Of A Thermostable Mutant Of Bacil		5e-10
3dkv_A	217	Crystal Structure Of Adenylate Kinase Variant Aklse		5e-10
1zd8_A	227	Structure Of Human Adenylate Kinase 3 Like 1 Length		5e-10
2ori_A	216	Crystal Structure Of A Thermostable Mutant Of Bacil		5e-10
1e4y_A	214	Mutant P9l Of Adenylate Kinase From E. Coli, Modifi		1e-09
3gmt_A	230	Crystal Structure Of Adenylate Kinase From Burkhold		1e-09
2bwj_A	199	Structure Of Adenylate Kinase 5 Length = 199		5e-08
3cm0_A	186	Crystal Structure Of Adenylate Kinase From Thermus		9e-08
3be4_A	217	Crystal Structure Of Cryptosporidium Parvum Adenyla		1e-07
3umf_A	217	Schistosoma Mansoni Adenylate Kinase Length = 217		4e-07
3l0p_A	223	Crystal Structures Of Iron Containing Adenylate Kin		1e-06
2xb4_A	223	Crystal Structures Of Zinc Containing Adenylate Kin		1e-06
1qf9_A	194	Ph Influences Fluoride Coordination Number Of The A		2e-06
1tev_A	196	Crystal Structure Of The Human UmpCMP KINASE IN OPE		3e-06
1zak_A	222	Adenylate Kinase From Maize In Complex With The Inh		5e-06
1z83_A	196	Crystal Structure Of Human Ak1a In Complex With Ap5		7e-06
3adk_A	195	Refined Structure Of Porcine Cytosolic Adenylate Ki		2e-05

>pdb|1AK2|A Chain A, Adenylate Kinase Isoenzyme-2 Length = 233

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 106/217 (48%), Gaps = 24/217 (11%)
Query: 62  RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL 121
           +GV+ VL+G PG  K   A  L+K   V H++ G ++R  ++  S L K++   ++ GKL
Sbjct: 15  KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKL 74
Query: 122 VPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD-----VDLVINFKSI 176
           V ++++  L+ K LE    +  +GF+LDG PRT  QAE+LD +++     +D VI F SI
Sbjct: 75  VSDEMVLELIEKNLETPPCK--NGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEF-SI 131
Query: 177 EDQLVKRNLES------------EAFSPHKEFLR--LGGXXXXXXXXXXXWKEKFRI--Y 220
            D L+ R +              E F+P KE ++  + G              K R+  Y
Sbjct: 132 PDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAY 191
Query: 221 AEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL 257
             Q   L +YYSK+        +  P   +  +L+A 
Sbjct: 192 HTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAF 228

>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2 Length = 242

Iteration: 1
 Score = 80.9 bits (198), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 105/217 (48%), Gaps = 24/217 (11%)
Query: 62  RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL 121
           +G++ VL+G PG  K   A  L++   V H++ G ++R  ++  S L K++   ++ GKL
Sbjct: 15  KGIRAVLLGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKL 74
Query: 122 VPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD-----VDLVINFKSI 176
           V ++++  L+ K LE    +  +GF+LDG PRT  QAE+LD +++     +D VI F SI
Sbjct: 75  VSDEMVVELIEKNLETPLCK--NGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEF-SI 131
Query: 177 EDQLVKRNLES------------EAFSPHKEFLR--LGGXXXXXXXXXXXWKEKFRI--Y 220
            D L+ R +              E F+P KE ++  + G              K R+  Y
Sbjct: 132 PDSLLIRRITGRLIHPKSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNEKALKIRLQAY 191
Query: 221 AEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL 257
             Q   L +YY K+        +  P   +  +L+A 
Sbjct: 192 HTQTTPLIEYYRKRGIHSAIDASQTPDVVFASILAAF 228

>pdb|3FB4|A Chain A, Crystal Structure Of Adenylate Kinase From Marinibacillus Marinus Length = 216

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 71/122 (58%), Gaps = 7/122 (5%)
Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           VL+G PG  K   A+ + +  E+PHIS G + R  +   + L  +  + +++G LVP++V
Sbjct: 4   VLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEV 63
Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD-----VDLVINFKSIEDQLV 181
              ++ +RL +     + GF+LDG PRT  QA+ LD ++      +D V+N K  +++L+
Sbjct: 64  TIGIVHERLSKD--DCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELM 121
Query: 182 KR 183
           KR
Sbjct: 122 KR 123

>pdb|3HPR|A Chain A, Crystal Structure Of V148g Adenylate Kinase From E. Coli, In Complex With Ap5a Length = 214

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 97/200 (48%), Gaps = 18/200 (9%)
Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           ++ +L+G PG  K   A  + +   +P IS G ++R  +   S L KQ  + ++ GKLV 
Sbjct: 1   MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI-VDVDLVINFKS----IED 178
           ++++ AL+ +R+ +   R  +GF+LDG PRT  QA+ + +  ++VD V+ F      I D
Sbjct: 61  DELVIALVKERIAQEDCR--NGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVD 118
Query: 179 QLVKRNLESEA-------FSPHKEFLRLGGXXXXXXXXXXXWKEKFRI----YAEQGKSL 227
           ++V R + + +       F+P K   +  G            +E  R     Y +    L
Sbjct: 119 RIVGRRVHAPSGRVYHVKFNPPKVEGKDDGTGEELTTRKDDQEETVRKRLVEYHQMTAPL 178
Query: 228 EDYYSKQRKLLNFQVAAAPG 247
             YYSK+ +  N + A   G
Sbjct: 179 IGYYSKEAEAGNTKYAKVDG 198

>pdb|1AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast Ligated With Inhibitor Ap5a, Showing The Pathway Of Phosphoryl Transfer Length = 220

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 21/214 (9%)
Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           ++ VLIG PG  K   A NL +     H++ G ++R +++  + L  +    +++G LV 
Sbjct: 5   IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVS 64
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD-----VDLVINFKSIED 178
           +D++  ++   L       ++GFILDG PRT  QAE LDQ++      ++  I  K  ++
Sbjct: 65  DDIMVNMIKDELTNNPA-CKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDE 123
Query: 179 QLVKR-----------NLESEAFSPHKEFLR--LGGXX--XXXXXXXXXWKEKFRIYAEQ 223
            LV R               + F+P KE ++  + G              K++   Y  Q
Sbjct: 124 LLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQ 183
Query: 224 GKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL 257
            + + D+Y K         +  P   W  +L+ L
Sbjct: 184 TEPIVDFYKKTGIWAGVDASQPPATVWADILNKL 217

>pdb|1S3G|A Chain A, Crystal Structure Of Adenylate Kinase From Bacillus Globisporus Length = 217

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 71/125 (56%), Gaps = 7/125 (5%)
Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           +  VL+G PG  K   AD + +    PHIS G + R  +   + L  +  + +++G LVP
Sbjct: 1   MNIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIV-----DVDLVINFKSIED 178
           ++V   ++ +RL +     ++GF+LDG PRT  QAE LDQ++      ++ V+N +  ++
Sbjct: 61  DEVTIGIVRERLSKSDC--DNGFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKE 118
Query: 179 QLVKR 183
           +L+ R
Sbjct: 119 ELIAR 123

>pdb|1AKE|A Chain A, Structure Of The Complex Between Adenylate Kinase From Escherichia Coli And The Inhibitor Ap5a Refined At 1.9 Angstroms Resolution: A Model For A Catalytic Transition State Length = 214

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 74/130 (56%), Gaps = 3/130 (2%)
Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           ++ +L+G PG  K   A  + +   +P IS G ++R  +   S L KQ  + ++ GKLV 
Sbjct: 1   MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVK 182
           ++++ AL+ +R+ +   R  +GF+LDG PRT  QA+ + +  ++VD V+ F   ++ +V 
Sbjct: 61  DELVIALVKERIAQEDCR--NGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVD 118
Query: 183 RNLESEAFSP 192
           R +     +P
Sbjct: 119 RIVGRRVHAP 128

>pdb|3AKY|A Chain A, Stability, Activity And Structure Of Adenylate Kinase Mutants Length = 220

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 21/214 (9%)
Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           ++ VLIG PG  K   A NL +     H++ G ++R +++  + L  +    +++G LV 
Sbjct: 5   IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVS 64
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD-----VDLVINFKSIED 178
           +D++  ++   L       ++GFILDG PRT  QAE LDQ++      ++  I  K  ++
Sbjct: 65  DDIMVNMIKDELTNNPA-CKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDE 123
Query: 179 QLVKR-----------NLESEAFSPHKEFLR--LGGXX--XXXXXXXXXWKEKFRIYAEQ 223
            LV R               + F+P KE ++  + G              K++   Y  Q
Sbjct: 124 LLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQ 183
Query: 224 GKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL 257
            + + D+Y K         +  P   W   L+ L
Sbjct: 184 TEPIVDFYKKTGIWAGVDASQPPATVWADFLNKL 217

>pdb|1ZIN|A Chain A, Adenylate Kinase With Bound Ap5a Length = 217

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 67/125 (53%), Gaps = 7/125 (5%)
Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           +  VL+G PG  K   A+ +     +PHIS G + R  +   + L  Q    ++ G LVP
Sbjct: 1   MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIV-----DVDLVINFKSIED 178
           ++V   ++ +RL +     ++GF+LDG PRT  QAE L+ ++      +D VI+    +D
Sbjct: 61  DEVTIGIVRERLSKDDC--QNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQD 118
Query: 179 QLVKR 183
            L++R
Sbjct: 119 VLMER 123

>pdb|1UKY|A Chain A, Substrate Specificity And Assembly Of Catalytic Center Derived From Two Structures Of Ligated Uridylate Kinase Length = 203

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 92/205 (44%), Gaps = 15/205 (7%)
Query: 56  AGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQ-IAN 114
           A SP +  V +VL G PG  K    + L K     H+S G L+R E     + Y + I N
Sbjct: 9   AFSPDQVSVIFVL-GGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKN 67
Query: 115 AVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQ-IVDVDLVINF 173
            + EG++VP+++  ALL   + +     +  F++DG PR   QA   ++ IV+   ++ F
Sbjct: 68  CIKEGQIVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFF 127
Query: 174 KSIEDQLVKRNLESEAFSPHKEFLRLGGXXXXXXXXXXXWKEKFRIYAEQGKSLEDYYSK 233
              ED +++R LE             G             K++F  + E    + +Y+  
Sbjct: 128 DCPEDIMLERLLER------------GKTSGRSDDNIESIKKRFNTFKETSMPVIEYFET 175
Query: 234 QRKLLNFQVAAAPGETWQGLLSALH 258
           + K++  +   +  + ++ +  A+ 
Sbjct: 176 KSKVVRVRCDRSVEDVYKDVQDAIR 200

>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From Plasmodium Falciparum Length = 243

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 7/124 (5%)
Query: 65  QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPE 124
           +++ +G PG  K   + NL K     H+S G L+R+    ++ L  +I N +NEGKLV +
Sbjct: 31  RYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDD 90
Query: 125 DVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIV-----DVDLVINFKSIEDQ 179
            ++ +L+ ++L+    + + GFILDG PR   QAE L++++      +D V  F   ++ 
Sbjct: 91  QMVLSLVDEKLKTP--QCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEV 148
Query: 180 LVKR 183
           LV R
Sbjct: 149 LVNR 152

>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4 Length = 246

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 69/121 (57%), Gaps = 7/121 (5%)
Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           V++G PG  K      +++   + H+S G  +R+ +   + + +     + +  LVP+ V
Sbjct: 31  VILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHV 90
Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVIN----FKSIEDQLVK 182
           I  L+   LE    RG+  ++LDG PRT  QAE LD+I +VDLVI+    F++++D+L +
Sbjct: 91  ITRLMMSELEN--RRGQH-WLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSR 147
Query: 183 R 183
           R
Sbjct: 148 R 148

>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p) Length = 231

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 69/121 (57%), Gaps = 7/121 (5%)
Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           V++G PG  K      +++   + H+S G  +R+ +   + + +     + +  LVP+ V
Sbjct: 9   VILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHV 68
Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVIN----FKSIEDQLVK 182
           I  L+   LE    RG+  ++LDG PRT  QAE LD+I +VDLVI+    F++++D+L +
Sbjct: 69  ITRLMMSELEN--RRGQH-WLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSR 125
Query: 183 R 183
           R
Sbjct: 126 R 126

>pdb|1DVR|A Chain A, Structure Of A Mutant Adenylate Kinase Ligated With An Atp- Analogue Showing Domain Closure Over Atp Length = 220

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 94/214 (43%), Gaps = 21/214 (9%)
Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           ++ VLIG PG  K   A NL +     H++ G ++R +++  + L  +    +++G LV 
Sbjct: 5   IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVS 64
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD-----VDLVINFKSIED 178
           +D++  ++   L       ++GFIL G PRT  QAE LDQ++      ++  I  K  ++
Sbjct: 65  DDIMVNMIKDELTNNPA-CKNGFILVGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDE 123
Query: 179 QLVKR-----------NLESEAFSPHKEFLR--LGGXX--XXXXXXXXXWKEKFRIYAEQ 223
            LV R               + F+P KE ++  + G              K++   Y  Q
Sbjct: 124 LLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQISDDNADALKKRLAAYHAQ 183
Query: 224 GKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL 257
            + + D+Y K         +  P   W  +L+ L
Sbjct: 184 TEPIVDFYKKTGIWAGVDASQPPATVWADILNKL 217

>pdb|1E4V|A Chain A, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In The Gly-Loop Length = 214

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 73/130 (56%), Gaps = 3/130 (2%)
Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           ++ +L+G P   K   A  + +   +P IS G ++R  +   S L KQ  + ++ GKLV 
Sbjct: 1   MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVK 182
           ++++ AL+ +R+ +   R  +GF+LDG PRT  QA+ + +  ++VD V+ F   ++ +V 
Sbjct: 61  DELVIALVKERIAQEDCR--NGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVD 118
Query: 183 RNLESEAFSP 192
           R +     +P
Sbjct: 119 RIVGRRVHAP 128

>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate Kinase Complexed With Two Molecules Of Adp And Mg Length = 201

Iteration: 1
 Score = 63.9 bits (154), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 7/125 (5%)
Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           ++ +L+G PG  K   A  L++ L +P IS G L R+ +   + L  +    ++ G LVP
Sbjct: 21  MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVP 80
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIV-----DVDLVINFKSIED 178
            D+   L+  RL        +GFILDG PR+  QA+ L +++     D+D V+ F+  E+
Sbjct: 81  SDLTNELVDDRLNN--PDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEE 138
Query: 179 QLVKR 183
            L++R
Sbjct: 139 VLLER 143

>pdb|2AK3|A Chain A, The Three-Dimensional Structure Of The Complex Between Mitochondrial Matrix Adenylate Kinase And Its Substrate Amp At 1.85 Angstroms Resolution Length = 226

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 71/131 (54%), Gaps = 4/131 (3%)
Query: 62  RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL 121
           R ++  ++G PG  K   +  ++K  E+ H+S G L+R  +   + +       +++GKL
Sbjct: 5   RLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKL 64
Query: 122 VPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLV 181
           +P+DV+  L+   L E     +  ++LDG PRT  QAE LD+   +D VIN  ++  +++
Sbjct: 65  IPDDVMTRLV---LHELKNLTQYNWLLDGFPRTLPQAEALDRAYQIDTVINL-NVPFEVI 120
Query: 182 KRNLESEAFSP 192
           K+ L +    P
Sbjct: 121 KQRLTARWIHP 131

>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate Kinase Length = 181

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 7/125 (5%)
Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           ++ +L+G PG  K   A  L++ L +P IS G L R+ +   + L  +    ++ G LVP
Sbjct: 1   MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIV-----DVDLVINFKSIED 178
            D+   L+  RL        +GFILDG PR+  QA+ L +++     D+D V+ F+  E+
Sbjct: 61  SDLTNELVDDRLNN--PDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEE 118
Query: 179 QLVKR 183
            L++R
Sbjct: 119 VLLER 123

>pdb|3DL0|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse3 Length = 216

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 72/125 (57%), Gaps = 7/125 (5%)
Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           +  VL+G PG  K    + + +   +PHIS G + R  +   + L  +  + +++G+LVP
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD-----VDLVINFKSIED 178
           ++V   ++ +RL  G    E GF+LDG PRT  QAE L++I++     +D VIN +  +D
Sbjct: 61  DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKD 118
Query: 179 QLVKR 183
            L++R
Sbjct: 119 VLMER 123

>pdb|2OSB|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (q16l/q199r/) Length = 216

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 72/125 (57%), Gaps = 7/125 (5%)
Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           +  VL+G PG  K    + + +   +PHIS G + R  +   + L  +  + +++G+LVP
Sbjct: 1   MNLVLMGLPGAGKGTLGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD-----VDLVINFKSIED 178
           ++V   ++ +RL  G    E GF+LDG PRT  QAE L++I++     +D VIN +  +D
Sbjct: 61  DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKD 118
Query: 179 QLVKR 183
            L++R
Sbjct: 119 VLMER 123

>pdb|1P3J|A Chain A, Adenylate Kinase From Bacillus Subtilis Length = 217

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 72/125 (57%), Gaps = 7/125 (5%)
Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           +  VL+G PG  K    + + +   +PHIS G + R  +   + L  +  + +++G+LVP
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD-----VDLVINFKSIED 178
           ++V   ++ +RL  G    E GF+LDG PRT  QAE L++I++     +D VIN +  +D
Sbjct: 61  DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKD 118
Query: 179 QLVKR 183
            L++R
Sbjct: 119 VLMER 123

>pdb|2QAJ|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (Q199rG213E) Length = 217

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 72/125 (57%), Gaps = 7/125 (5%)
Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           +  VL+G PG  K    + + +   +PHIS G + R  +   + L  +  + +++G+LVP
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD-----VDLVINFKSIED 178
           ++V   ++ +RL  G    E GF+LDG PRT  QAE L++I++     +D VIN +  +D
Sbjct: 61  DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKD 118
Query: 179 QLVKR 183
            L++R
Sbjct: 119 VLMER 123

>pdb|2P3S|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (G214rQ199R) Length = 217

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 72/125 (57%), Gaps = 7/125 (5%)
Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           +  VL+G PG  K    + + +   +PHIS G + R  +   + L  +  + +++G+LVP
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD-----VDLVINFKSIED 178
           ++V   ++ +RL  G    E GF+LDG PRT  QAE L++I++     +D VIN +  +D
Sbjct: 61  DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKD 118
Query: 179 QLVKR 183
            L++R
Sbjct: 119 VLMER 123

>pdb|2EU8|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (Q199r) Length = 216

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 72/125 (57%), Gaps = 7/125 (5%)
Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           +  VL+G PG  K    + + +   +PHIS G + R  +   + L  +  + +++G+LVP
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD-----VDLVINFKSIED 178
           ++V   ++ +RL  G    E GF+LDG PRT  QAE L++I++     +D VIN +  +D
Sbjct: 61  DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKD 118
Query: 179 QLVKR 183
            L++R
Sbjct: 119 VLMER 123

>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex Aeolicus In Complex With Ap5a Length = 206

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 89/206 (43%), Gaps = 20/206 (9%)
Query: 66  WVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPED 125
            V +G PG  K   A  L+K     HIS G ++R+ +   + L K+    +  G+LVP+D
Sbjct: 3   LVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDD 62
Query: 126 VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD-----VDLVINFKSIEDQL 180
           +I AL+     E  +      I DG PRT  QAE LD++++     VD V+ F  + D++
Sbjct: 63  LIIALI-----EEVFPKHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLF-EVPDEV 116
Query: 181 VKRNLESEAFSPHK-EFLRLG--------GXXXXXXXXXXXWKEKFRIYAEQGKSLEDYY 231
           V   L     +P   E   +                      K++  +Y EQ   L +YY
Sbjct: 117 VIERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYY 176
Query: 232 SKQRKLLNFQVAAAPGETWQGLLSAL 257
            K+  L     +    E ++ +L  +
Sbjct: 177 KKKGILRIIDASKPVEEVYRQVLEVI 202

>pdb|2OO7|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (T179iQ199R) Length = 217

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 72/125 (57%), Gaps = 7/125 (5%)
Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           +  VL+G PG  K    + + +   +PHIS G + R  +   + L  +  + +++G+LVP
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD-----VDLVINFKSIED 178
           ++V   ++ +RL  G    E GF+LDG PRT  QAE L++I++     +D VIN +  +D
Sbjct: 61  DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKD 118
Query: 179 QLVKR 183
            L++R
Sbjct: 119 VLMER 123

>pdb|3DKV|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse1 Length = 217

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 74/125 (59%), Gaps = 7/125 (5%)
Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           +  VL+G PG  K   A+ + +   +PHIS G + R  +   + L  +  + +++G+LVP
Sbjct: 1   MNIVLMGLPGAGKGTQAERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD-----VDLVINFKSIED 178
           ++V   ++ +RL +     E GF+LDG PRT  QAE L++I++     +D VIN +  ++
Sbjct: 61  DEVTIGIVRERLSKS--DCERGFLLDGFPRTVAQAEALEEILEEMGRPIDYVINIQVDKE 118
Query: 179 QLVKR 183
           +L++R
Sbjct: 119 ELMER 123

>pdb|1ZD8|A Chain A, Structure Of Human Adenylate Kinase 3 Like 1 Length = 227

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 72/132 (54%), Gaps = 6/132 (4%)
Query: 62  RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANA-VNEGK 120
           R ++ V++G PG  K   +  ++   E+ H+S G L+R  +  R      +A A +++GK
Sbjct: 6   RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNML-RGTEIGVLAKAFIDQGK 64
Query: 121 LVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQL 180
           L+P+DV+  L    L E     +  ++LDG PRT  QAE LD+   +D VIN  ++  ++
Sbjct: 65  LIPDDVMTRLA---LHELKNLTQYSWLLDGFPRTLPQAEALDRAYQIDTVINL-NVPFEV 120
Query: 181 VKRNLESEAFSP 192
           +K+ L +    P
Sbjct: 121 IKQRLTARWIHP 132

>pdb|2ORI|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (A193vQ199R) Length = 216

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 72/125 (57%), Gaps = 7/125 (5%)
Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           +  VL+G PG  K    + + +   +PHIS G + R  +   + L  +  + +++G+LVP
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD-----VDLVINFKSIED 178
           ++V   ++ +RL  G    E GF+LDG PRT  QAE L++I++     +D VIN +  +D
Sbjct: 61  DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKD 118
Query: 179 QLVKR 183
            L++R
Sbjct: 119 VLMER 123

>pdb|1E4Y|A Chain A, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In The Gly-Loop Length = 214

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 62/105 (59%), Gaps = 3/105 (2%)
Query: 89  VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFIL 148
           +P IS G ++R  +   S L KQ  + ++ GKLV ++++ AL+ +R+ +   R  +GF+L
Sbjct: 26  IPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCR--NGFLL 83
Query: 149 DGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEAFSP 192
           DG PRT  QA+ + +  ++VD V+ F   ++ +V R +     +P
Sbjct: 84  DGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAP 128

>pdb|3GMT|A Chain A, Crystal Structure Of Adenylate Kinase From Burkholderia Pseu Length = 230

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 3/120 (2%)
Query: 65  QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPE 124
           + +L+G PG  K   A+ + +   +P IS G  +R  +   + L  +     +EGKLVP+
Sbjct: 10  RLILLGAPGAGKGTQANFIKEKFGIPQISTGDXLRAAVKAGTPLGVEAKTYXDEGKLVPD 69
Query: 125 DVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKR 183
            +I  L+ +RL+E      +G++ DG PRT  QA+   +  V +D V+       ++++R
Sbjct: 70  SLIIGLVKERLKEADC--ANGYLFDGFPRTIAQADAXKEAGVAIDYVLEIDVPFSEIIER 127

>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5 Length = 199

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
Query: 68  LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVI 127
           +IG PG  K    + L +     H+S G L+R+EL+  S   K I + +  G LVP  ++
Sbjct: 17  IIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIV 76
Query: 128 FALLSKRLEEGYYRGES-GFILDGIPRTRIQAEILD-QIVDVDLVINFKSIEDQLVKRNL 185
             LL + +      G++ GF++DG PR   Q E    +I D  LVI      D +  R L
Sbjct: 77  LELLKEAMVASL--GDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLL 134
Query: 186 E 186
           +
Sbjct: 135 Q 135

>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus Thermophilus Hb8 Length = 186

Iteration: 1
 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 7/103 (6%)
Query: 63  GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLV 122
           G   + +G PG  K   A  L++ L    +S G ++R  ++  + L +++   +  G LV
Sbjct: 4   GQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLV 63
Query: 123 PEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIV 165
           P+D+I  L+ + L E         I DG PRT  QAE LD+++
Sbjct: 64  PDDLILELIREELAE-------RVIFDGFPRTLAQAEALDRLL 99

>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate Kinase Cgd5_3360 Length = 217

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 66/122 (54%), Gaps = 7/122 (5%)
Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           +LIG PG  K    + + K   + H+S G ++R+ +   + +  +  + +  G  V +++
Sbjct: 9   ILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEI 68
Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAE----ILDQIVD-VDLVINFKSIEDQLV 181
           +  L+ ++ + G     +GF+LDG PRT  QAE    IL +I D +  VI F+  + +++
Sbjct: 69  VLGLVKEKFDLGVCV--NGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEII 126
Query: 182 KR 183
           +R
Sbjct: 127 ER 128

>pdb|3UMF|A Chain A, Schistosoma Mansoni Adenylate Kinase Length = 217

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 78/179 (43%), Gaps = 14/179 (7%)
Query: 68  LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVI 127
           ++G PG  K    + L +     H+S G L+R E+   S   K++   +  G+LVP +V+
Sbjct: 34  VLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVV 93
Query: 128 FALLSKRLEEGYYRGESGFILDGIPRTRIQA-EILDQIVDVDLVINFKSIEDQLVKRNLE 186
            ALL + + +        F++DG PR   Q  +   ++     VINF   E+ + KR L+
Sbjct: 94  LALLKEAMIK-LVDKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLK 152
Query: 187 SEAFSPHKEFLRLGGXXXXXXXXXXXWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAA 245
               S   +                   ++FR + E  K + ++Y +Q K++    +  
Sbjct: 153 RAETSNRVD------------DNEETIVKRFRTFNELTKPVIEHYKQQNKVITIDASGT 199

>pdb|3L0P|A Chain A, Crystal Structures Of Iron Containing Adenylate Kinase From Desulfovibrio Gigas Length = 223

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 57/111 (51%), Gaps = 4/111 (3%)
Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           +  ++ G  G  K    + +     + HI  G + R+ +   + L K+    ++ G LVP
Sbjct: 1   MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAE-ILDQIVDVDLVINF 173
           +D+   ++ + LE    +G+ G++LDG PR  +QA+ + + + +  + INF
Sbjct: 61  DDITIPMVLETLES---KGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINF 108

>pdb|2XB4|A Chain A, Crystal Structures Of Zinc Containing Adenylate Kinase From Desulfovibrio Gigas Length = 223

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           +  ++ G  G  K    + +     + HI  G + R+ +   + L K+    ++ G LVP
Sbjct: 1   MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKR 183
           +D+   ++ + LE    +G+ G++LDG PR  +QA+ L           F++++++ +K 
Sbjct: 61  DDITIPMVLETLES---KGKDGWLLDGFPRNTVQAQKL-----------FEALQEKGMKI 106
Query: 184 NLESEAFSPHK 194
           N   E   P +
Sbjct: 107 NFVIEILLPRE 117

>pdb|1QF9|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx Phosphoryl Transfer Transition State Analog In UmpCMP Kinase Length = 194

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 19/174 (10%)
Query: 68  LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVI 127
           ++G PG  K     N+ +     H+S G L+RQE    S   + IA  +  G++VP  V 
Sbjct: 11  VLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVT 70
Query: 128 FALLSKRLEEGYYRGESGFILDGIPR----TRIQAEILDQIVDVDLVINFKSIEDQLVKR 183
             LL   ++    +    F++DG PR         E +   VD   V+ F   E+ + +R
Sbjct: 71  VKLLKNAIDANQGK---NFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQR 127
Query: 184 NLESEAFSPHKEFLRLGGXXXXXXXXXXXWKEKFRIYAEQGKSLEDYYSKQRKL 237
                        L+ G             K++F  +  Q K + D+Y+K  K+
Sbjct: 128 ------------LLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKV 169

>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN Conformation Length = 196

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Query: 68  LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL-SPRSALYKQIANAVNEGKLVPEDV 126
           ++G PG  K      + +     H+S G L+R E  +P S   + I   + EGK+VP ++
Sbjct: 8   VLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEI 67
Query: 127 IFALLSKRLEEGYYRG--ESGFILDGIPRTR--IQA--EILDQIVDVDLVINFKSIEDQL 180
             +LL + +++       ++ F++DG PR +  +Q   + +D   DV  V+ F    +  
Sbjct: 68  TISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEIC 127
Query: 181 VKRNLE 186
           ++R LE
Sbjct: 128 IERCLE 133

>pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex With The Inhibitor P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a) Length = 222

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           ++ ++ G P   K    + +    ++ HIS G L+R E++  S   K+    + +G+LVP
Sbjct: 6   LKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVP 65
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVK 182
           ++++  ++ +RL +   + E+G++LDG PR+  QA  L+ + +  D  I     ++ LV+
Sbjct: 66  DEIVVNMVKERLRQPDAQ-ENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVE 124
Query: 183 R 183
           R
Sbjct: 125 R 125

>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a Length = 196

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 68  LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVI 127
           ++G PG  K    + + +     H+S G L+R E+S  SA  K+++  + +G+LVP + +
Sbjct: 14  VVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETV 73
Query: 128 FALLSKRLEEGYYRGESGFILDGIPRTRIQAE 159
             +L   +         GF++DG PR   Q E
Sbjct: 74  LDMLRDAM-VAKVNTSKGFLIDGYPREVQQGE 104

>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase At 2.1 Angstroms Resolution Length = 195

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 68  LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVI 127
           ++G PG  K    + + +     H+S G L+R E+S  SA  K ++  + +G+LVP + +
Sbjct: 14  VVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETV 73
Query: 128 FALLSKRLEEGYYRGESGFILDGIPRTRIQAE 159
             +L   +         GF++DG PR   Q E
Sbjct: 74  LDMLRDAM-VAKVDTSKGFLIDGYPREVKQGE 104

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	273
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	1e-31
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	2e-31
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	2e-28
2rgx_A	206	Adenylate kinase; transferase(phosphotransferase),	3e-28
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	4e-28
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	4e-28
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	5e-28
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	9e-28
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	1e-27
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	2e-27
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	3e-27
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	4e-27
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	4e-27
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	6e-27
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	2e-26
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	2e-26
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	3e-26
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	1e-25
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	2e-25
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	3e-24
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	6e-06
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	4e-05

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* Length = 227

 Score =  116 bits (292), Expect = 1e-31
 Identities = 54/218 (24%), Positives = 94/218 (43%), Gaps = 25/218 (11%)

Query: 58  SPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN 117
               R ++ V++G PG  K   +  ++   E+ H+S G L+R  +   + +       ++
Sbjct: 2   GASARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFID 61

Query: 118 EGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIE 177
           +GKL+P+DV+  L    L+      +  ++LDG PRT  QAE LD+   +D VIN     
Sbjct: 62  QGKLIPDDVMTRLALHELKN---LTQYSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPF 118

Query: 178 DQLVKR--------------NLESEAFSPHKEFLR--LGGARFS--AADAASAWKEKFRI 219
           + + +R              N+E   F+P K      L G        D      ++ + 
Sbjct: 119 EVIKQRLTARWIHPASGRVYNIE---FNPPKTVGIDDLTGEPLIQREDDKPETVIKRLKA 175

Query: 220 YAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL 257
           Y +Q K + +YY K+  L  F       + W  + + L
Sbjct: 176 YEDQTKPVLEYYQKKGVLETFS-GTETNKIWPYVYAFL 212

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A Length = 246

 Score =  116 bits (292), Expect = 2e-31
 Identities = 53/239 (22%), Positives = 91/239 (38%), Gaps = 30/239 (12%)

Query: 42  LHGQASEP-----MLRLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS 96
           +H                   S   + ++ V++G PG  K      +++   + H+S G 
Sbjct: 1   MHHHHHHSSGVDLGTENLYFQSMASKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGH 60

Query: 97  LVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRI 156
            +R+ +   + + +     + +  LVP+ VI  L+   LE    R    ++LDG PRT  
Sbjct: 61  FLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELEN---RRGQHWLLDGFPRTLG 117

Query: 157 QAEILDQIVDVDLVINFKSIEDQLVKR--------------NLESEAFSPHKEFLR--LG 200
           QAE LD+I +VDLVI+     + L  R              NL+   F+P        + 
Sbjct: 118 QAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLD---FNPPHVHGIDDVT 174

Query: 201 GARFS--AADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL 257
           G        D   A   + R Y +  K + + Y  +  L  F       + W  + +  
Sbjct: 175 GEPLVQQEDDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFS-GTETNKIWPYVYTLF 232

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} Length = 243

 Score =  108 bits (271), Expect = 2e-28
 Identities = 55/229 (24%), Positives = 96/229 (41%), Gaps = 31/229 (13%)

Query: 52  RLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQ 111
           R      P  R   ++ +G PG  K   + NL K     H+S G L+R+    ++ L  +
Sbjct: 21  RYACLSKPDGR---YIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLK 77

Query: 112 IANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI-----VD 166
           I N +NEGKLV + ++ +L+ ++L+    + + GFILDG PR   QAE L+++       
Sbjct: 78  IKNIINEGKLVDDQMVLSLVDEKLKTP--QCKKGFILDGYPRNVKQAEDLNKLLQKNQTK 135

Query: 167 VDLVINFKSIEDQLVKR--------------NLESEAFSPHKEFLR--LGGARFS--AAD 208
           +D V  F   ++ LV R              +     F+P K   R  +          D
Sbjct: 136 LDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKI---FNPPKVPFRDDVTNEPLIQREDD 192

Query: 209 AASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL 257
                K++  ++  +   L  YY  +  L+N        +  + +   +
Sbjct: 193 NEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHI 241

>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding, nucleo binding, transferase; HET: AP5; 1.90A {Aquifex aeolicus} PDB: 2rh5_A Length = 206

 Score =  106 bits (267), Expect = 3e-28
 Identities = 53/207 (25%), Positives = 94/207 (45%), Gaps = 24/207 (11%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           V +G PG  K   A  L+K     HIS G ++R+ +   + L K+    +  G+LVP+D+
Sbjct: 4   VFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDL 63

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLV 181
           I AL+ +   +         I DG PRT  QAE LD++     + VD V+ F+  ++ ++
Sbjct: 64  IIALIEEVFPK-----HGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVI 118

Query: 182 KR-----------NLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDY 230
           +R            +    ++P    +++   R    D     K++  +Y EQ   L +Y
Sbjct: 119 ERLSGRRINPETGEVYHVKYNPPPPGVKVIQ-R--EDDKPEVIKKRLEVYREQTAPLIEY 175

Query: 231 YSKQRKLLNFQVAAAPGETWQGLLSAL 257
           Y K+  L     +    E ++ +L  +
Sbjct: 176 YKKKGILRIIDASKPVEEVYRQVLEVI 202

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* Length = 203

 Score =  105 bits (265), Expect = 4e-28
 Identities = 43/173 (24%), Positives = 79/173 (45%), Gaps = 14/173 (8%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS-PRSALYKQIANAVNEGKLVPED 125
            ++G PG  K    + L K     H+S G L+R E     S   + I N + EG++VP++
Sbjct: 19  FVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQE 78

Query: 126 VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIV-DVDLVINFKSIEDQLVKRN 184
           +  ALL   + +     +  F++DG PR   QA   ++ + +   ++ F   ED +++R 
Sbjct: 79  ITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERL 138

Query: 185 LESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKL 237
           LE    S           R  + D   + K++F  + E    + +Y+  + K+
Sbjct: 139 LERGKTS----------GR--SDDNIESIKKRFNTFKETSMPVIEYFETKSKV 179

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} Length = 217

 Score =  106 bits (266), Expect = 4e-28
 Identities = 46/214 (21%), Positives = 92/214 (42%), Gaps = 28/214 (13%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           +LIG PG  K    + + K   + H+S G ++R+ +   + +  +  + +  G  V +++
Sbjct: 9   ILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEI 68

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLV 181
           +  L+ ++ + G     +GF+LDG PRT  QAE L +I       +  VI F+  + +++
Sbjct: 69  VLGLVKEKFDLG--VCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEII 126

Query: 182 KR--------------NLESEAFSPHKEFLR--LGGARFS--AADAASAWKEKFRIYAEQ 223
           +R              +++   ++P K+     + G        D A A K +  ++ +Q
Sbjct: 127 ERISGRCTHPASGRIYHVK---YNPPKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVFHKQ 183

Query: 224 GKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL 257
              L  +Y     L        P E  + +   L
Sbjct: 184 TAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKIL 217

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* Length = 233

 Score =  106 bits (267), Expect = 5e-28
 Identities = 65/232 (28%), Positives = 107/232 (46%), Gaps = 28/232 (12%)

Query: 49  PMLRLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSAL 108
           P +          +GV+ VL+G PG  K   A  L+K   V H++ G ++R  ++  S L
Sbjct: 2   PNVPAAEPVPESPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSEL 61

Query: 109 YKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI---- 164
            K++   ++ GKLV ++++  L+ K LE      ++GF+LDG PRT  QAE+LD +    
Sbjct: 62  GKKLKATMDAGKLVSDEMVLELIEKNLETP--PCKNGFLLDGFPRTVRQAEMLDDLMEKR 119

Query: 165 -VDVDLVINFKSIEDQLVKR--------------NLESEAFSPHKEFLR--LGGARFS-- 205
              +D VI F   +  L++R              + E   F+P KE ++  + G      
Sbjct: 120 KEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEE---FNPPKEPMKDDITGEPLIRR 176

Query: 206 AADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL 257
           + D   A K +   Y  Q   L +YYSK+        +  P   +  +L+A 
Sbjct: 177 SDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAF 228

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} Length = 186

 Score =  104 bits (262), Expect = 9e-28
 Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 24/196 (12%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           + +G PG  K   A  L++ L    +S G ++R  ++  + L +++   +  G LVP+D+
Sbjct: 8   IFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDL 67

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLV 181
           I  L+ + L E         I DG PRT  QAE LD++       +  V+  +  E++LV
Sbjct: 68  ILELIREELAE-------RVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELV 120

Query: 182 KRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQ 241
           +R L                 R  + D     + +  +Y E+ + L  YY  +  L    
Sbjct: 121 RRILRRAELE----------GR--SDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVD 168

Query: 242 VAAAPGETWQGLLSAL 257
               P E +  + +AL
Sbjct: 169 GLGTPDEVYARIRAAL 184

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} Length = 199

 Score =  104 bits (262), Expect = 1e-27
 Identities = 43/172 (25%), Positives = 68/172 (39%), Gaps = 14/172 (8%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
            +IG PG  K    + L +     H+S G L+R+EL+  S   K I + +  G LVP  +
Sbjct: 16  FIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGI 75

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIV-DVDLVINFKSIEDQLVKRNL 185
           +  LL + +         GF++DG PR   Q E   + + D  LVI      D +  R L
Sbjct: 76  VLELLKEAMVAS-LGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLL 134

Query: 186 ESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKL 237
           +    S   +            D      ++   Y      +  YY  + +L
Sbjct: 135 QMSRSSLPVD------------DTTKTIAKRLEAYYRASIPVIAYYETKTQL 174

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} Length = 216

 Score =  104 bits (262), Expect = 2e-27
 Identities = 53/214 (24%), Positives = 95/214 (44%), Gaps = 28/214 (13%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           VL+G PG  K   A+ + +  E+PHIS G + R  +   + L  +  + +++G LVP++V
Sbjct: 4   VLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEV 63

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLV 181
              ++ +RL +   +   GF+LDG PRT  QA+ LD +       +D V+N K  +++L+
Sbjct: 64  TIGIVHERLSKDDCQK--GFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELM 121

Query: 182 KR--------------NLESEAFSPHKEFLR--LGGARFS--AADAASAWKEKFRIYAEQ 223
           KR              +     F+P          G        D     K +  +  +Q
Sbjct: 122 KRLTGRWICKTCGATYHTI---FNPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQ 178

Query: 224 GKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL 257
            + L D+YS++  L +        + +  +   L
Sbjct: 179 TQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLL 212

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, cytoplasm, metal-binding, nucleotide biosynthesis, nucleotide-binding; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* Length = 216

 Score =  104 bits (261), Expect = 3e-27
 Identities = 54/211 (25%), Positives = 93/211 (44%), Gaps = 22/211 (10%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           VL+G PG  K    + + +   +PHIS G + R  +   + L  +  + +++G+LVP++V
Sbjct: 4   VLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEV 63

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLV 181
              ++ +RL +       GF+LDG PRT  QAE L++I       +D VIN +  +D L+
Sbjct: 64  TIGIVKERLGKDDCER--GFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLM 121

Query: 182 KR-----------NLESEAFSPHKEFLR--LGGARFS--AADAASAWKEKFRIYAEQGKS 226
           +R                 F+P K        G      A D      ++  +  +Q   
Sbjct: 122 ERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAP 181

Query: 227 LEDYYSKQRKLLNFQVAAAPGETWQGLLSAL 257
           L D+Y ++  L+N        + +  L   L
Sbjct: 182 LLDFYDEKGYLVNVNGQQDIQDVYADLKVLL 212

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} Length = 230

 Score =  104 bits (261), Expect = 4e-27
 Identities = 49/208 (23%), Positives = 91/208 (43%), Gaps = 24/208 (11%)

Query: 58  SPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN 117
                 ++ +L+G PG  K   A+ + +   +P IS G ++R  +   + L  +    ++
Sbjct: 3   HHHHHHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMD 62

Query: 118 EGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSI 176
           EGKLVP+ +I  L+ +RL+E      +G++ DG PRT  QA+ + +  V +D V+     
Sbjct: 63  EGKLVPDSLIIGLVKERLKEADCA--NGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVP 120

Query: 177 EDQLVKR--------------NLESEAFSPHKEFLR--LGGARFS--AADAASAWKEKFR 218
             ++++R              +++   F+P K   +  + G        D     K++  
Sbjct: 121 FSEIIERMSGRRTHPASGRTYHVK---FNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLD 177

Query: 219 IYAEQGKSLEDYYSKQRKLLNFQVAAAP 246
           +Y  Q K L  YY    +        AP
Sbjct: 178 VYEAQTKPLITYYGDWARRGAENGLKAP 205

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* Length = 194

 Score =  102 bits (258), Expect = 4e-27
 Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 19/175 (10%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
            ++G PG  K     N+ +     H+S G L+RQE    S   + IA  +  G++VP  V
Sbjct: 10  FVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIV 69

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIV----DVDLVINFKSIEDQLVK 182
              LL   ++         F++DG PR        ++ +    D   V+ F   E+ + +
Sbjct: 70  TVKLLKNAIDAN---QGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQ 126

Query: 183 RNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKL 237
           R L+    S           R  + D   + K++F  +  Q K + D+Y+K  K+
Sbjct: 127 RLLKRGESS----------GR--SDDNIESIKKRFNTFNVQTKLVIDHYNKFDKV 169

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* Length = 220

 Score =  103 bits (259), Expect = 6e-27
 Identities = 57/220 (25%), Positives = 98/220 (44%), Gaps = 27/220 (12%)

Query: 61  RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGK 120
              ++ VLIG PG  K   A NL +     H++ G ++R +++  + L  +    +++G 
Sbjct: 2   SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGG 61

Query: 121 LVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKS 175
           LV +D++  ++   L       ++GFILDG PRT  QAE LDQ+       ++  I  K 
Sbjct: 62  LVSDDIMVNMIKDELTNNPAC-KNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKV 120

Query: 176 IEDQLVKR--------------NLESEAFSPHKEFLR--LGGARFS--AADAASAWKEKF 217
            ++ LV R              +     F+P KE ++  + G      + D A A K++ 
Sbjct: 121 DDELLVARITGRLIHPASGRSYHKI---FNPPKEDMKDDVTGEALVQRSDDNADALKKRL 177

Query: 218 RIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL 257
             Y  Q + + D+Y K         +  P   W  +L+ L
Sbjct: 178 AAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKL 217

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A Length = 196

 Score =  101 bits (254), Expect = 2e-26
 Identities = 36/172 (20%), Positives = 75/172 (43%), Gaps = 14/172 (8%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
            ++G PG  K    + + +     H+S G L+R E+S  SA  K+++  + +G+LVP + 
Sbjct: 13  FVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLET 72

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIV-DVDLVINFKSIEDQLVKRNL 185
           +  +L   +         GF++DG PR   Q E  ++ +    L++   +  + + +R L
Sbjct: 73  VLDMLRDAMVA-KVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLL 131

Query: 186 ESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKL 237
           +    S   +            D     K++   Y +  + +  +Y K+  +
Sbjct: 132 KRGETSGRVD------------DNEETIKKRLETYYKATEPVIAFYEKRGIV 171

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 Length = 196

 Score =  101 bits (254), Expect = 2e-26
 Identities = 40/178 (22%), Positives = 78/178 (43%), Gaps = 19/178 (10%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL-SPRSALYKQIANAVNEGKLVPED 125
            ++G PG  K      + +     H+S G L+R E  +P S   + I   + EGK+VP +
Sbjct: 7   FVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVE 66

Query: 126 VIFALLSKRLEEGYYRGES--GFILDGIPRTRIQAEILDQIV----DVDLVINFKSIEDQ 179
           +  +LL + +++          F++DG PR +   +  ++ +    DV  V+ F    + 
Sbjct: 67  ITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEI 126

Query: 180 LVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKL 237
            ++R LE    S           R  + D   + +++ + Y +  K + D Y +  K+
Sbjct: 127 CIERCLERGKSS----------GR--SDDNRESLEKRIQTYLQSTKPIIDLYEEMGKV 172

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A Length = 201

 Score =  100 bits (252), Expect = 3e-26
 Identities = 53/196 (27%), Positives = 85/196 (43%), Gaps = 25/196 (12%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           +L+G PG  K   A  L++ L +P IS G L R+ +   + L  +    ++ G LVP D+
Sbjct: 24  LLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDL 83

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLV 181
              L+  RL        +GFILDG PR+  QA+ L ++      D+D V+ F+  E+ L+
Sbjct: 84  TNELVDDRLNNP--DAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLL 141

Query: 182 KRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQ 241
           +R                   R  A D       + ++Y ++   L +YY    +L    
Sbjct: 142 ERLKG----------------RGRADDTDDVILNRMKVYRDETAPLLEYYRD--QLKTVD 183

Query: 242 VAAAPGETWQGLLSAL 257
                 E +   L AL
Sbjct: 184 AVGTMDEVFARALRAL 199

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* Length = 214

 Score =   99 bits (250), Expect = 1e-25
 Identities = 52/215 (24%), Positives = 94/215 (43%), Gaps = 29/215 (13%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           +L+G P   K   A  + +   +P IS G ++R  +   S L KQ  + ++ GKLV +++
Sbjct: 4   ILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDEL 63

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKR-- 183
           + AL+ +R+ +      +GF+LDG PRT  QA+ + +  ++VD V+ F   ++ +V R  
Sbjct: 64  VIALVKERIAQ--EDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIV 121

Query: 184 ------------NLESEAFSPHKEFLR--LGGARFS--AADAASAWKEKFRIYAEQGKSL 227
                       +++   F+P K   +  + G   +    D     +++   Y +    L
Sbjct: 122 GRRVHAPSGRVYHVK---FNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPL 178

Query: 228 EDYYSKQ-----RKLLNFQVAAAPGETWQGLLSAL 257
             YYSK+      K           E    L   L
Sbjct: 179 IGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL 213

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 Length = 222

 Score = 99.2 bits (248), Expect = 2e-25
 Identities = 46/214 (21%), Positives = 94/214 (43%), Gaps = 25/214 (11%)

Query: 61  RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGK 120
              ++ ++ G P   K    + +    ++ HIS G L+R E++  S   K+    + +G+
Sbjct: 3   ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQ 62

Query: 121 LVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQ 179
           LVP++++  ++ +RL +   + E+G++LDG PR+  QA  L+ + +  D  I     ++ 
Sbjct: 63  LVPDEIVVNMVKERLRQPDAQ-ENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDEL 121

Query: 180 LVKR--------------NLESEAFSPHKEFLRLGGARFS--AADAASAWKEKFRIYAEQ 223
           LV+R              +L+   +SP +       +R +    D     K +   Y + 
Sbjct: 122 LVERVVGRRLDPVTGKIYHLK---YSPPEN--EEIASRLTQRFDDTEEKVKLRLETYYQN 176

Query: 224 GKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL 257
            +SL   Y  +  ++  Q  A     +  +   L
Sbjct: 177 IESLLSTY--ENIIVKVQGDATVDAVFAKIDELL 208

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* Length = 223

 Score = 96.2 bits (240), Expect = 3e-24
 Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 8/122 (6%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           ++ G  G  K    + +     + HI  G + R+ +   + L K+    ++ G LVP+D+
Sbjct: 4   LIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDI 63

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLV 181
              ++ + LE    +G+ G++LDG PR  +QA+ L +      + ++ VI      +   
Sbjct: 64  TIPMVLETLES---KGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAK 120

Query: 182 KR 183
            R
Sbjct: 121 NR 122

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Length = 179

 Score = 44.5 bits (105), Expect = 6e-06
 Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 7/118 (5%)

Query: 68  LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE-GKLVPEDV 126
           + G PG  K  +A  L +      I M  +VR+  S  +   +++ +      ++  + V
Sbjct: 6   ITGMPGSGKSEFAKLLKER-GAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGV 64

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQ-IVDVDLVINFKSIEDQLVKR 183
           +  L  + L           + DG+ R+  + E   + + D   ++   S      KR
Sbjct: 65  VARLCVEELGT---SNHDLVVFDGV-RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKR 118

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A Length = 180

 Score = 42.3 bits (99), Expect = 4e-05
 Identities = 27/136 (19%), Positives = 51/136 (37%), Gaps = 19/136 (13%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           +L G PGV K      L+    + +I++G L R+E      LY    +   +  ++ ED 
Sbjct: 15  LLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE-----QLYDGY-DEEYDCPILDEDR 68

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIV--DVDLVINFK-----SIEDQ 179
           +   L  ++ EG      G I+D              +     D  + ++        ++
Sbjct: 69  VVDELDNQMREG------GVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEK 122

Query: 180 LVKRNLESEAFSPHKE 195
            +  N++ E F    E
Sbjct: 123 KLTDNIQCEIFQVLYE 138

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	273
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	100.0
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	100.0
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	100.0
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	100.0
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	100.0
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	100.0
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	100.0
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	100.0
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	100.0
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	100.0
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	100.0
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	100.0
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	99.97
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	99.96
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	99.96
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	99.96
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	99.96
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	99.95
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	99.95
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	99.95
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.93
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	99.82
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	99.79
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	99.77
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	99.74
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	99.72
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	99.72
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.72
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	99.71
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	99.71
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	99.71
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	99.7
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	99.69
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	99.68
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	99.68
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	99.68
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	99.68
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	99.68
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	99.68
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	99.67
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	99.66
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	99.66
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	99.66
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	99.66
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	99.65
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	99.65
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	99.65
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	99.64
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.64
1via_A	175	Shikimate kinase; structural genomics, transferase	99.63
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	99.63
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	99.62
2vli_A	183	Antibiotic resistance protein; transferase, tunica	99.62
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	99.62
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	99.62
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	99.61
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	99.61
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	99.59
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	99.59
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	99.58
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	99.57
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	99.57
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	99.56
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	99.55
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	99.54
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	99.54
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	99.53
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	99.5
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	99.5
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	99.48
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	99.47
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	99.44
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	99.44
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	99.41
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	99.39
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	99.39
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	99.37
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	99.35
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	99.34
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	99.33
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	99.31
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	99.29
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	99.27
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	99.27
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.22
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	99.22
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	99.21
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	99.18
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	99.16
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.12
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.11
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	99.11
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	99.06
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	99.05
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	99.04
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	99.0
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	98.98
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	98.91
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	98.87
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.8
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.74
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.72
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.67
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	98.66
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.64
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	98.61
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.57
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.52
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.51
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	98.48
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.4
1osn_A	341	Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, tra	98.39
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.36
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	98.35
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	98.34
1e2k_A	331	Thymidine kinase; transferase, antiviral drug, enz	98.31
3czq_A	304	Putative polyphosphate kinase 2; structural genomi	98.3
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.21
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.2
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.15
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	98.08
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.08
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.01
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.87
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	97.86
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	97.81
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	97.79
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	97.79
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	97.73
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	97.72
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.69
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.69
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.6
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	97.52
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	97.5
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.49
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.47
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.45
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.45
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.44
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.42
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.41
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	97.4
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.39
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	97.39
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	97.37
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.36
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.36
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.35
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.35
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.34
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	97.34
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	97.34
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	97.29
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	97.28
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	97.26
3rhf_A	289	Putative polyphosphate kinase 2 family protein; PS	97.25
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.24
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	97.24
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.24
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.21
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	97.21
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.2
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	97.18
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.15
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.14
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	97.14
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	97.12
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.07
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	97.07
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.07
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.06
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	97.02
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	97.02
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.0
3bos_A	242	Putative DNA replication factor; P-loop containing	96.99
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.98
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.93
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	96.93
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.92
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	96.92
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	96.92
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	96.89
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.88
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	96.86
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.84
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.84
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.84
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.78
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.78
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.76
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.76
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.75
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.7
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	96.7
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.69
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.67
3pvs_A	447	Replication-associated recombination protein A; ma	96.67
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.67
3co5_A	143	Putative two-component system transcriptional RES	96.66
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	96.64
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	96.63
2r44_A	331	Uncharacterized protein; putative ATPase, structur	96.63
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.63
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	96.62
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.6
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.59
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.58
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	96.57
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	96.56
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.56
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.56
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	96.56
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.52
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.52
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.51
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.51
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.48
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.48
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.48
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.47
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	96.46
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.44
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	96.43
2qgz_A	308	Helicase loader, putative primosome component; str	96.42
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.39
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	96.39
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.38
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	96.38
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.38
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.37
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.36
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	96.34
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.32
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.32
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.32
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.32
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.29
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.29
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	96.29
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	96.27
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.26
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.24
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	96.24
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.24
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.24
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.23
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.23
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	96.19
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.18
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	96.18
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.18
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.17
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.16
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.13
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.13
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	96.13
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.11
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	96.11
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	96.1
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.1
2wji_A	165	Ferrous iron transport protein B homolog; membrane	96.09
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.08
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.08
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	96.06
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.06
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.06
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.05
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.04
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.04
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	96.04
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	96.03
2og2_A	359	Putative signal recognition particle receptor; nuc	96.03
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.02
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	96.02
2chq_A	319	Replication factor C small subunit; DNA-binding pr	96.02
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.01
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.01
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	96.0
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	96.0
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.0
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	95.99
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	95.99
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	95.98
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	95.98
2ged_A	193	SR-beta, signal recognition particle receptor beta	95.98
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	95.97
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	95.97
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	95.96
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	95.96
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	95.96
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	95.96
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	95.96
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	95.95
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	95.95
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	95.93
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	95.93
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.92
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	95.92
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.92
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	95.91
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	95.91
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	95.91
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	95.89
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	95.89
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	95.88
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	95.88
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	95.88
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	95.87
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	95.86
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	95.86
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	95.86
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	95.85
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	95.85
1b0u_A	262	Histidine permease; ABC transporter, transport pro	95.84
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	95.84
2ewv_A	372	Twitching motility protein PILT; pilus retraction	95.82
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	95.82
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	95.82
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	95.82
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	95.81
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	95.81
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	95.81
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	95.8
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	95.8
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	95.8
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	95.8
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	95.8
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	95.79
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	95.78
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	95.78
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	95.78
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	95.78
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	95.77
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	95.77
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	95.76
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	95.76
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	95.76
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	95.76
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	95.76
2ghi_A	260	Transport protein; multidrug resistance protein, M	95.75
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	95.75
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	95.75
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	95.74
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	95.73
1g6h_A	257	High-affinity branched-chain amino acid transport	95.73
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	95.73
1ji0_A	240	ABC transporter; ATP binding protein, structural g	95.72
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	95.72
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	95.72
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	95.72
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	95.71
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	95.69
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.69
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	95.69
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	95.68
1sgw_A	214	Putative ABC transporter; structural genomics, P p	95.68
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	95.68
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	95.68
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	95.68
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	95.67
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	95.65
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	95.63
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	95.6
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	95.59
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	95.59
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	95.58
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	95.58
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	95.57
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	95.55
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	95.55
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	95.54
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	95.54
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	95.54
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	95.53
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	95.53
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	95.52
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	95.52
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	95.49
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	95.48
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	95.48
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	95.47
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	95.46
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	95.46
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	95.46
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	95.45
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	95.45
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	95.45
2fh5_B	214	SR-beta, signal recognition particle receptor beta	95.43
3llu_A	196	RAS-related GTP-binding protein C; structural geno	95.43
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	95.42
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	95.42
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	95.42
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	95.41
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	95.38
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	95.37
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	95.37
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	95.35
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	95.35
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	95.34
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	95.33
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	95.32
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	95.32
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	95.31
1p9r_A	418	General secretion pathway protein E; bacterial typ	95.3
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	95.28
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	95.28
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	95.27
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	95.27
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	95.26
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	95.24
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	95.23
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	95.23
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	95.22
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	95.22
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	95.21
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	95.21
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	95.21
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	95.21
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	95.2
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	95.2
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	95.2
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	95.2
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	95.18
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	95.18
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	95.17
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	95.14
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	95.14
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	95.12
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	95.1
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	95.1
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	95.09
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	95.07
2fna_A	357	Conserved hypothetical protein; structural genomic	95.07
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	95.05
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	95.05
2z43_A	324	DNA repair and recombination protein RADA; archaea	95.04
1u94_A	356	RECA protein, recombinase A; homologous recombinat	95.04
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	95.03
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	95.03
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	95.0
2xxa_A	433	Signal recognition particle protein; protein trans	94.98
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	94.98
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	94.96
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	94.94
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	94.93
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	94.93
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	94.91
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	94.9
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	94.9
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	94.88
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	94.85
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	94.84
3kta_A	182	Chromosome segregation protein SMC; structural mai	94.79
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	94.78
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	94.76
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	94.73
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	94.7
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	94.68
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	94.67
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	94.66
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	94.65
2r6a_A	454	DNAB helicase, replicative helicase; replication,	94.64
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	94.63
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	94.61
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	94.57
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	94.56
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	94.56
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	94.56
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	94.5
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	94.49
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	94.46
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	94.44
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	94.37
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	94.33
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	94.31
3io5_A	333	Recombination and repair protein; storage dimer, i	94.29
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	94.27
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	94.23
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	94.23
1xp8_A	366	RECA protein, recombinase A; recombination, radior	94.22
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	94.19
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	94.11
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	94.11
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	94.1
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	94.1
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	94.09
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	94.07
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	93.09
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	94.0
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	93.99
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	93.99
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	93.93
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	93.93
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	93.9
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	93.84
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	93.81
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	93.8
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	93.76
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	93.73

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=100.00  E-value=6.7e-45  Score=310.10  Aligned_cols=192  Identities=27%  Similarity=0.421  Sum_probs=178.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~  143 (273)
                      |+|+|+|||||||+|+|++|+++||++|||++|++|+++..++++|+.+++++.+|.++|++++..++.+++..     .
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~-----~   75 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPK-----H   75 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCS-----S
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhcc-----C
Confidence            57999999999999999999999999999999999999999999999999999999999999999999998865     3


Q ss_pred             ceEEEeCCCCCHHHHHHHHhh-----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCC--------CCCCcH
Q 024067          144 SGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF--------SAADAA  210 (273)
Q Consensus       144 ~g~IlDg~P~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~--------~~~d~~  210 (273)
                      .||||||||||..|++.|+..     ..+++||+|+||++++++|+.+|+.|+.||+.||..+.|+        +.||++
T Consensus        76 ~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~~g~~l~~r~DD~~  155 (206)
T 3sr0_A           76 GNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKP  155 (206)
T ss_dssp             SCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCCTTCCCBCCGGGSH
T ss_pred             CceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeeccCCCCCceecccCCCCH
Confidence            689999999999999998654     4689999999999999999999999999999999877665        468899


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067          211 SAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ  260 (273)
Q Consensus       211 e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~  260 (273)
                      +.+++|++.|++++.|+.+||+++++++.||+++++++||++|.++|...
T Consensus       156 e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~e~  205 (206)
T 3sr0_A          156 EVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIGDG  205 (206)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHccC
Confidence            99999999999999999999999999999999999999999999998653

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=100.00  E-value=2.3e-41  Score=290.12  Aligned_cols=189  Identities=24%  Similarity=0.362  Sum_probs=170.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccc
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY  140 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~  140 (273)
                      .++++|+|+|||||||+|+|++|+++||++|||++|++|+++..++++|+.+++++++|.++|++++..++.+++.+..+
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~~~~~  106 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMIKLVD  106 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHTT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHhhccc
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999976432


Q ss_pred             CCcceEEEeCCCCCHHHHHHHHhh-CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHH
Q 024067          141 RGESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRI  219 (273)
Q Consensus       141 ~~~~g~IlDg~P~~~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~  219 (273)
                       ...|||+|||||+..|++.|+.. ..+++||+|+|+++++.+|+.+|..+.            .+.||+++.+++|++.
T Consensus       107 -~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~~~------------~R~DD~~e~i~~Rl~~  173 (217)
T 3umf_A          107 -KNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAETS------------NRVDDNEETIVKRFRT  173 (217)
T ss_dssp             -TCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC------------------CHHHHHHHHHHHHH
T ss_pred             -cccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhcccccC------------CCCCCCHHHHHHHHHH
Confidence             36799999999999999999754 578999999999999999999997532            2568999999999999


Q ss_pred             HHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcCC
Q 024067          220 YAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHM  262 (273)
Q Consensus       220 y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~~  262 (273)
                      |+++..|+.+||+++++++.||+++++++||++|.+.|.....
T Consensus       174 Y~~~t~pl~~~Y~~~~~l~~Idg~~~~eeV~~~I~~~l~k~G~  216 (217)
T 3umf_A          174 FNELTKPVIEHYKQQNKVITIDASGTVDAIFDKVNHELQKFGV  216 (217)
T ss_dssp             HHHHTHHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999999986543

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=100.00  E-value=8.5e-42  Score=294.24  Aligned_cols=196  Identities=23%  Similarity=0.384  Sum_probs=165.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~  141 (273)
                      ..+++.|+|+|||||||+|+.|+++||++||++++++|+++..++++|+.+++++.+|.++|++++..++.+++.+..+ 
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~-   85 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADC-   85 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGG-
T ss_pred             cccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCccc-
Confidence            3578899999999999999999999999999999999999999999999999999999999999999999999987644 


Q ss_pred             CcceEEEeCCCCCHHHHHHHHhh-CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCC---------------C
Q 024067          142 GESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF---------------S  205 (273)
Q Consensus       142 ~~~g~IlDg~P~~~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~---------------~  205 (273)
                       ..||||||||++..|++.|+.. ..||+||+|+||++++++|+.+|+.|+.||+.||..+.|+               +
T Consensus        86 -~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~d~~g~~L~~R  164 (230)
T 3gmt_A           86 -ANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQR  164 (230)
T ss_dssp             -TTCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCC
T ss_pred             -CCCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCCcccccCCcccccCCCCCccCcCCCccCccccC
Confidence             4799999999999999999765 4789999999999999999999999999999999877665               4


Q ss_pred             CCCcHHHHHHHHHHHHHhhHHHHHHHHhc-----------CcEEEEeCCCChhHHHHHHHHHHHh
Q 024067          206 AADAASAWKEKFRIYAEQGKSLEDYYSKQ-----------RKLLNFQVAAAPGETWQGLLSALHL  259 (273)
Q Consensus       206 ~~d~~e~~~~rl~~y~~~~~~l~~~y~~~-----------~~~~~id~~~s~~ev~~~I~~~l~~  259 (273)
                      .||+++.+++|++.|++++.|+++||++.           ++++.||+++++++|+++|.++|.+
T Consensus       165 ~DD~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~~~eV~~~i~~~l~~  229 (230)
T 3gmt_A          165 DDDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVRRAQVS  229 (230)
T ss_dssp             GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC-----------------
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCCHHHHHHHHHHHHhc
Confidence            67899999999999999999999999973           6899999999999999999998864

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=100.00  E-value=3.7e-36  Score=262.04  Aligned_cols=196  Identities=25%  Similarity=0.403  Sum_probs=180.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccc
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY  140 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~  140 (273)
                      .++++|+|+|+|||||||+|+.|++++|+++|++++++++....++++|+.+++++.+|..++++++..++...+.... 
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~-  105 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQ-  105 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTSGG-
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhccc-
Confidence            3678999999999999999999999999999999999999999999999999999999999999999999999887653 


Q ss_pred             CCcceEEEeCCCCCHHHHHHHHhh-----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCC-----------
Q 024067          141 RGESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF-----------  204 (273)
Q Consensus       141 ~~~~g~IlDg~P~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~-----------  204 (273)
                       ...+||+||||++..|++.|+..     ..||.||+|++|++++++|+.+|..|+.||+.||..+.|+           
T Consensus       106 -~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~  184 (243)
T 3tlx_A          106 -CKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNE  184 (243)
T ss_dssp             -GSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCC
T ss_pred             -ccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCcccCcccccccCCCcccCccccccc
Confidence             36899999999999999988654     4689999999999999999999999999999999877665           


Q ss_pred             ----CCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHH
Q 024067          205 ----SAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALH  258 (273)
Q Consensus       205 ----~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~  258 (273)
                          +.+|+++.+++|+..|++...++.+||.+.++++.||+++++++|+++|.+.|.
T Consensus       185 ~l~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~  242 (243)
T 3tlx_A          185 PLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHID  242 (243)
T ss_dssp             BCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred             cccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHc
Confidence                346789999999999999999999999999999999999999999999999875

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=100.00  E-value=1.3e-34  Score=246.68  Aligned_cols=194  Identities=27%  Similarity=0.412  Sum_probs=177.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~  143 (273)
                      ++|+|+|+|||||||+|+.|++++|+++|++|+++++...++++.++.+.+++.+|..++++++..++...+....  ..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~--~~   78 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDD--CE   78 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGG--GT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccc--cc
Confidence            4789999999999999999999999999999999999999999999999999999999999999999999887643  36


Q ss_pred             ceEEEeCCCCCHHHHHHHHhh-----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCC-------------
Q 024067          144 SGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFS-------------  205 (273)
Q Consensus       144 ~g~IlDg~P~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~-------------  205 (273)
                      .+||+||||++..|+..+...     ..||++|+|++|++++++|+.+|+.|+.||+.||..+.|+.             
T Consensus        79 ~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~  158 (216)
T 3dl0_A           79 RGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELY  158 (216)
T ss_dssp             TCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTTCCBEE
T ss_pred             CCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccccccCCCcccCcccccccccc
Confidence            889999999999999888654     25899999999999999999999999999999998776653             


Q ss_pred             --CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067          206 --AADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL  259 (273)
Q Consensus       206 --~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~  259 (273)
                        .+++++.+++|+..|.+...++.+||.+.+.++.||+++++++|+++|.+.|..
T Consensus       159 ~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~  214 (216)
T 3dl0_A          159 QRADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLGG  214 (216)
T ss_dssp             CCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHGG
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence              567899999999999999999999999988899999999999999999999864

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=100.00  E-value=6e-34  Score=242.43  Aligned_cols=194  Identities=26%  Similarity=0.392  Sum_probs=177.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~  143 (273)
                      ++|+|+|+|||||||+|+.|++++|++++++|+++++...++++.++.+.+++.+|..++++++..++.+.+....  ..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~--~~   78 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDD--CQ   78 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGG--GT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccc--CC
Confidence            4789999999999999999999999999999999999999999999999999999999999999999999887643  25


Q ss_pred             ceEEEeCCCCCHHHHHHHHhh-----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCC-------------
Q 024067          144 SGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFS-------------  205 (273)
Q Consensus       144 ~g~IlDg~P~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~-------------  205 (273)
                      .+||+||||++..|+..|...     ..||++|+|++|++++++|+.+|+.|+.||+.||..+.|+.             
T Consensus        79 ~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~  158 (216)
T 3fb4_A           79 KGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELY  158 (216)
T ss_dssp             TCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCCBEE
T ss_pred             CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccccccCCCCcccccccccCccc
Confidence            789999999999999888654     24899999999999999999999999999999998776653             


Q ss_pred             --CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067          206 --AADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL  259 (273)
Q Consensus       206 --~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~  259 (273)
                        .+++++.+++|+..|.+...++.+||.+.+.++.||+++++++++++|.+.|..
T Consensus       159 ~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~  214 (216)
T 3fb4_A          159 QRIDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGG  214 (216)
T ss_dssp             CCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHT
T ss_pred             cCCCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHHHHh
Confidence              466789999999999999999999999988899999999999999999999864

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=100.00  E-value=6e-33  Score=239.80  Aligned_cols=199  Identities=29%  Similarity=0.442  Sum_probs=176.4

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcc
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY  139 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~  139 (273)
                      +.+++.|+|+|+|||||||+|+.|++++++++|++++++++....++++++.+++++..|..++++++..++..++....
T Consensus        13 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~   92 (233)
T 1ak2_A           13 SPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPP   92 (233)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGG
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhccc
Confidence            45678999999999999999999999999999999999999888888999999999999999999999999998887643


Q ss_pred             cCCcceEEEeCCCCCHHHHHHHHhh-----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCC---------
Q 024067          140 YRGESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFS---------  205 (273)
Q Consensus       140 ~~~~~g~IlDg~P~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~---------  205 (273)
                        ...|||+||||++..|++.|..+     ..||++|+|+++++++.+|+.+|..++.||+.||..+.|+.         
T Consensus        93 --~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~  170 (233)
T 1ak2_A           93 --CKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITG  170 (233)
T ss_dssp             --GTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCCEEBTTTBCCSSTTBCTTTC
T ss_pred             --ccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCCccccccCCCcccccccccc
Confidence              25789999999999998877543     35899999999999999999999999999999987665442         


Q ss_pred             ------CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067          206 ------AADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ  260 (273)
Q Consensus       206 ------~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~  260 (273)
                            .+++.+.+++|+..|.+...++.++|.+.+.++.||+++++++|+++|.+.|...
T Consensus       171 ~~l~~r~d~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~I~~~l~~~  231 (233)
T 1ak2_A          171 EPLIRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSKA  231 (233)
T ss_dssp             CBCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHhh
Confidence                  3566889999999999999999999998778999999999999999999998753

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=1.9e-33  Score=240.47  Aligned_cols=194  Identities=22%  Similarity=0.371  Sum_probs=171.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~  141 (273)
                      ++++|+|+|+|||||||+|+.|++++|+++|++|+++++....++++|+.+++++.+|..++++++..++.+++...  .
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~--~   81 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLG--V   81 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTT--T
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhcc--c
Confidence            56899999999999999999999999999999999999988888899999999999999999999999998888763  2


Q ss_pred             CcceEEEeCCCCCHHHHHHHHhh-----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCC-----------
Q 024067          142 GESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFS-----------  205 (273)
Q Consensus       142 ~~~g~IlDg~P~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~-----------  205 (273)
                      .+.+||+||||++..|++.|...     ..||++|+|+++++++.+|+.+|..++.||+.||..+.|+.           
T Consensus        82 ~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~  161 (217)
T 3be4_A           82 CVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEP  161 (217)
T ss_dssp             TTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCB
T ss_pred             cCCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCccccCccccccCCCCccccccccccc
Confidence            36789999999999998877632     36899999999999999999999988899999998766543           


Q ss_pred             ----CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHH
Q 024067          206 ----AADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL  257 (273)
Q Consensus       206 ----~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l  257 (273)
                          .+++.+.+++|+..|.+...++.+||++.+.++.||+++++++|+++|.+.|
T Consensus       162 l~~~~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l  217 (217)
T 3be4_A          162 LVWRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKIL  217 (217)
T ss_dssp             CBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHC
T ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHhhC
Confidence                2456889999999999999999999998778999999999999999998753

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=100.00  E-value=1.1e-32  Score=235.86  Aligned_cols=195  Identities=27%  Similarity=0.437  Sum_probs=173.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-hccc
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLE-EGYY  140 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~-~~~~  140 (273)
                      ++++|+|+|+|||||||+|+.|++++++++|++|+++++...++++.|+.+++++.+|..++++.+..++.+.+. ..  
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~--   80 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNP--   80 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCG--
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhcc--
Confidence            578999999999999999999999999999999999999888889999999999999999999999999988886 32  


Q ss_pred             CCcceEEEeCCCCCHHHHHHHHhh-----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCC----------
Q 024067          141 RGESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFS----------  205 (273)
Q Consensus       141 ~~~~g~IlDg~P~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~----------  205 (273)
                      ..+.+||+||||++..|++.|+.+     ..||++|+|+++++++++|+.+|..++.||+.||..+.|+.          
T Consensus        81 ~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~d~~~~~  160 (220)
T 1aky_A           81 ACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGE  160 (220)
T ss_dssp             GGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCC
T ss_pred             ccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCccccccCCCccccccccccc
Confidence            135789999999999998766543     46899999999999999999999988999999987665542          


Q ss_pred             -----CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHH
Q 024067          206 -----AADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALH  258 (273)
Q Consensus       206 -----~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~  258 (273)
                           .+++.+.+++|+..|.+...++.++|.+.+.++.||+++++++|+++|...|.
T Consensus       161 ~l~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~  218 (220)
T 1aky_A          161 ALVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLG  218 (220)
T ss_dssp             BCBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHHHHHHT
T ss_pred             ccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence                 34668889999999999999999999887789999999999999999999885

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=100.00  E-value=2e-32  Score=233.33  Aligned_cols=192  Identities=26%  Similarity=0.425  Sum_probs=170.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~  143 (273)
                      ++|+|+|+|||||||+++.|++++|+++|++|+++++.+..+++.|+.+++++.+|..++++++..++.+.+....  ..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~--~~   78 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQED--CR   78 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGG--GG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccc--cC
Confidence            4689999999999999999999999999999999999888888899999999999999999999999998887642  24


Q ss_pred             ceEEEeCCCCCHHHHHHHHhh-CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCC---------------CCC
Q 024067          144 SGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF---------------SAA  207 (273)
Q Consensus       144 ~g~IlDg~P~~~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~---------------~~~  207 (273)
                      .+||+||||++..|+..|... ..||++|+|+++++++++|+.+|..++.||+.||....|+               +.+
T Consensus        79 ~~~i~dg~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~pp~~~~~~~~~~~~l~~r~d  158 (214)
T 1e4v_A           79 NGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKD  158 (214)
T ss_dssp             GCEEEESCCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCTT
T ss_pred             CCEEEeCCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHCCcccCCcCCcccccCCCCCccccccccccccccCCC
Confidence            789999999999998888654 4689999999999999999999988888999998765544               345


Q ss_pred             CcHHHHHHHHHHHHHhhHHHHHHHHhc-----CcEEEEeCCCChhHHHHHHHHHH
Q 024067          208 DAASAWKEKFRIYAEQGKSLEDYYSKQ-----RKLLNFQVAAAPGETWQGLLSAL  257 (273)
Q Consensus       208 d~~e~~~~rl~~y~~~~~~l~~~y~~~-----~~~~~id~~~s~~ev~~~I~~~l  257 (273)
                      ++++.+++|++.|.+...++.+||.+.     +.++.||+++++++|+++|.+.|
T Consensus       159 d~~~~~~~rl~~y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~~~~v~~~i~~~l  213 (214)
T 1e4v_A          159 DQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL  213 (214)
T ss_dssp             CSHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence            678899999999999999999999865     57999999999999999999876

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=100.00  E-value=1.1e-31  Score=230.59  Aligned_cols=191  Identities=19%  Similarity=0.320  Sum_probs=169.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~  143 (273)
                      ++|+|+|+|||||||+++.|++++|++++++|+++++.+..+++.|+.+++++.+|..++++++..++...+...  . +
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~--~-g   77 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESK--G-K   77 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHH--C-T
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhcc--c-C
Confidence            479999999999999999999999999999999999988888899999999999999999999999998888763  1 4


Q ss_pred             ceEEEeCCCCCHHHHHHHHhh-----CCCceEEEEccCHHHHHHHHhcCCcCCC-cccccccCCCCCCC-----------
Q 024067          144 SGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSP-HKEFLRLGGARFSA-----------  206 (273)
Q Consensus       144 ~g~IlDg~P~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~-~~~~y~~~~~~~~~-----------  206 (273)
                      .+||+||||++..|++.|...     ..||++|+|++|++++.+|+.+|..++. ||+.||..+.|+..           
T Consensus        78 ~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~g~~y~~~~~~p~~~~~~~~~~~~~  157 (223)
T 2xb4_A           78 DGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGA  157 (223)
T ss_dssp             TCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCEESSCTTSCCBTTCGGGCCBTTBCTTTCCB
T ss_pred             CeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccCCccccCCccccccCCCccccccccccccc
Confidence            789999999999998888643     3689999999999999999999988777 99999987655432           


Q ss_pred             -----CCcHH-HHHHHHHHHHHhhHHHHH---HHHh-----cCcEEEEeCCCChhHHHHHHHHHH
Q 024067          207 -----ADAAS-AWKEKFRIYAEQGKSLED---YYSK-----QRKLLNFQVAAAPGETWQGLLSAL  257 (273)
Q Consensus       207 -----~d~~e-~~~~rl~~y~~~~~~l~~---~y~~-----~~~~~~id~~~s~~ev~~~I~~~l  257 (273)
                           +|+++ .+++|+..|.+...|+.+   +|.+     .+.++.||+++++++|+++|.+.|
T Consensus       158 l~~r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~~~~~~ida~~~~~~v~~~i~~~l  222 (223)
T 2xb4_A          158 LSARADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTLLAQL  222 (223)
T ss_dssp             EECCGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHTCEEEEEETTSCHHHHHHHHHHHH
T ss_pred             cccCCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhhhhhccCCeEEEEECCCCHHHHHHHHHHHh
Confidence                 34567 999999999999999999   9987     567999999999999999999876

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=100.00  E-value=3.1e-31  Score=227.87  Aligned_cols=198  Identities=24%  Similarity=0.371  Sum_probs=173.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccc
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY  140 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~  140 (273)
                      .++++|+|+|+|||||||+++.|++++|++++++|+++++....++++|+.+++++.+|..++++....++.+++...  
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~--   82 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNL--   82 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTC--
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcc--
Confidence            357899999999999999999999999999999999999888888899999999999999999988888887777642  


Q ss_pred             CCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCC---------------C
Q 024067          141 RGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF---------------S  205 (273)
Q Consensus       141 ~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~---------------~  205 (273)
                       ...+||+||||++..|++.|+....+|++|+|+++++++++|+..|..++.||+.|+....|+               +
T Consensus        83 -~~~~~vid~~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~y~~~~~pp~~~~~~~~~~~~l~~r  161 (227)
T 1zd8_A           83 -TQYSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQR  161 (227)
T ss_dssp             -TTSCEEEESCCCSHHHHHHHHTTSCCCEEEEEECCHHHHHHHHTCEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCC
T ss_pred             -cCCCEEEeCCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHcCcCCCccCCccccccCCCCcccccccccccccCC
Confidence             246899999999999998888777899999999999999999999988877888887655443               2


Q ss_pred             CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcCC
Q 024067          206 AADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHM  262 (273)
Q Consensus       206 ~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~~  262 (273)
                      .+++.+.+++|+..|.+...++.+||.+.+.++.||++ ++++|+++|.+.|.....
T Consensus       162 ~~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~id~~-~~~~v~~~i~~~l~~~~~  217 (227)
T 1zd8_A          162 EDDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGT-ETNKIWPYVYAFLQTKVP  217 (227)
T ss_dssp             GGGSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECS-SHHHHHHHHHHHHTTTSC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHccCCEEEEeCC-CHHHHHHHHHHHHHhhcC
Confidence            34578899999999999999999999877789999998 999999999999986654

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=99.97  E-value=5.5e-30  Score=219.23  Aligned_cols=197  Identities=22%  Similarity=0.316  Sum_probs=168.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccc
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY  140 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~  140 (273)
                      .+|+.|+|+|+|||||||+++.|+++++++++++|+++++....+++.|+.+++++.+|..++++.+..++...+....+
T Consensus         3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~   82 (222)
T 1zak_A            3 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDA   82 (222)
T ss_dssp             CCSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhccc
Confidence            35788999999999999999999999999999999999988888889999999999999999999888888777754322


Q ss_pred             CCcceEEEeCCCCCHHHHHHHHhh-CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCC-----------CCC
Q 024067          141 RGESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFS-----------AAD  208 (273)
Q Consensus       141 ~~~~g~IlDg~P~~~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~-----------~~d  208 (273)
                       ...+||+||||++..|+..|... ..|+++|+|+++++++.+|+..|..++.||+.|+....|+.           .++
T Consensus        83 -~~~~~vidg~~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r~~d  161 (222)
T 1zak_A           83 -QENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDD  161 (222)
T ss_dssp             -HHTCEEEESCCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBCCTTC
T ss_pred             -cCCcEEEECCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccccccccCCCC
Confidence             24689999999999888888754 46899999999999999999999888889998887655442           245


Q ss_pred             cHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067          209 AASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ  260 (273)
Q Consensus       209 ~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~  260 (273)
                      ..+.+++|+..|.....++.++|..  .++.||+++++++|+++|.+.+...
T Consensus       162 ~~~~i~~Rl~~~~~~~~~l~~~y~~--~~~~Id~~~~~~ev~~~I~~~l~~~  211 (222)
T 1zak_A          162 TEEKVKLRLETYYQNIESLLSTYEN--IIVKVQGDATVDAVFAKIDELLGSI  211 (222)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHTTCC--CEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHh--cEEEEECCCCHHHHHHHHHHHHHhh
Confidence            6788999999999888888888864  4889999999999999999998653

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=99.96  E-value=1.5e-27  Score=200.83  Aligned_cols=188  Identities=24%  Similarity=0.427  Sum_probs=157.6

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHc-cCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL-SPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEG  138 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~-~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~  138 (273)
                      +.+++.|+|+|+|||||||+++.|++++|+++|++|+++++.. ..++.+++.+++++.+|...+++....++.+.+...
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~   91 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDN   91 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhh
Confidence            4567899999999999999999999999999999999999764 367788999999999999999888877777666542


Q ss_pred             ccCCcceEEEeCCCCCHHHHHHHHhh-CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHH
Q 024067          139 YYRGESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKF  217 (273)
Q Consensus       139 ~~~~~~g~IlDg~P~~~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl  217 (273)
                      ...+..+||+||+|++..++..++.. ..+|++|+|++|++++++|+..|....            .+.+++.+.+++|+
T Consensus        92 l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~~~~------------~~~~~~~e~~~~r~  159 (203)
T 1ukz_A           92 VKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKTS------------GRSDDNIESIKKRF  159 (203)
T ss_dssp             HHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHH------------CCTTCSHHHHHHHH
T ss_pred             hccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccccC------------CCCCCCHHHHHHHH
Confidence            22233689999999999998888654 458999999999999999998875210            02356778899999


Q ss_pred             HHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067          218 RIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL  259 (273)
Q Consensus       218 ~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~  259 (273)
                      ..|.+...++.++|...+.++.||+++++++++++|...+..
T Consensus       160 ~~~~~~~~~~~~~~~~~~~vi~id~~~~~e~v~~~i~~~l~~  201 (203)
T 1ukz_A          160 NTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAIRD  201 (203)
T ss_dssp             HHHHHTTHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHhc
Confidence            999998899999998878888999999999999999998864

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=99.96  E-value=3.2e-27  Score=197.09  Aligned_cols=186  Identities=20%  Similarity=0.349  Sum_probs=158.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~  141 (273)
                      +++.|+|+|+|||||||+|+.|++++|++++++|++++.....+++.++.+++++.+|..++.+....++...+.... .
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~-~   86 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKV-N   86 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHT-T
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhcc-c
Confidence            567999999999999999999999999999999999998887888999999999999999999888888877776432 2


Q ss_pred             CcceEEEeCCCCCHHHHHHHHhh-CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHH
Q 024067          142 GESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIY  220 (273)
Q Consensus       142 ~~~g~IlDg~P~~~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y  220 (273)
                      .+.++|+||+|++..|.+.+... ..++++|+|++|++++.+|+.+|....            .+.+++.+.+.+|+..|
T Consensus        87 ~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~------------~~~~~~~~~~~~r~~~~  154 (196)
T 2c95_A           87 TSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGETS------------GRVDDNEETIKKRLETY  154 (196)
T ss_dssp             TCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHTSS------------SCGGGSHHHHHHHHHHH
T ss_pred             cCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccCCcC------------CCCCCCHHHHHHHHHHH
Confidence            35789999999999988877543 568999999999999999998875311            13355678889999999


Q ss_pred             HHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067          221 AEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ  260 (273)
Q Consensus       221 ~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~  260 (273)
                      .....++.++|...+.++.||++.++++++++|...+...
T Consensus       155 ~~~~~~~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~l~~~  194 (196)
T 2c95_A          155 YKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLDAL  194 (196)
T ss_dssp             HHHTHHHHHHHHHHTCEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHHHh
Confidence            9988998888987777888999999999999999998753

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=99.96  E-value=6.4e-27  Score=194.36  Aligned_cols=183  Identities=24%  Similarity=0.353  Sum_probs=157.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~  141 (273)
                      +++.|+|+|+|||||||+++.|++++|++++++|+++++...++++.++.+.+++.+|...+++....++...+...   
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~---   81 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDAN---   81 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTS---
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc---
Confidence            46789999999999999999999999999999999999887778889999999999999999988888888877653   


Q ss_pred             CcceEEEeCCCCCHHHHHHHHhh----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHH
Q 024067          142 GESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKF  217 (273)
Q Consensus       142 ~~~g~IlDg~P~~~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl  217 (273)
                      .+.++|+||+|++..+...+...    ..+|++|+|++|++++.+|+..|....            .+.+++.+.+.+|+
T Consensus        82 ~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~------------~r~~~~~~~~~~ri  149 (194)
T 1qf9_A           82 QGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESS------------GRSDDNIESIKKRF  149 (194)
T ss_dssp             TTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTS------------CCTTCSHHHHHHHH
T ss_pred             CCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccC------------CCCCCCHHHHHHHH
Confidence            35789999999999888777433    258999999999999999998875311            13456788899999


Q ss_pred             HHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067          218 RIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL  259 (273)
Q Consensus       218 ~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~  259 (273)
                      ..|.+...++.++|...+.++.||+++++++++++|...+..
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~i~~~l~~  191 (194)
T 1qf9_A          150 NTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFKS  191 (194)
T ss_dssp             HHHHHTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence            999988889999998877788999999999999999999875

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=99.96  E-value=1.4e-27  Score=201.08  Aligned_cols=179  Identities=29%  Similarity=0.498  Sum_probs=152.7

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcc
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY  139 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~  139 (273)
                      +.++++|+|+|+|||||||+|+.|++.+|+++|++|+++++....+++.++.+++++.+|..++++....++.+.+... 
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~-   95 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNP-   95 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSG-
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHhcc-
Confidence            4567899999999999999999999999999999999999888888899999999999999999998888887777643 


Q ss_pred             cCCcceEEEeCCCCCHHHHHHHHhh-----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHH
Q 024067          140 YRGESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWK  214 (273)
Q Consensus       140 ~~~~~g~IlDg~P~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~  214 (273)
                       ....+||+||+|++..|++.++..     ..|+++|+|++|++++.+|+..|.                +.+++++.++
T Consensus        96 -~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~----------------r~~~~~e~~~  158 (201)
T 2cdn_A           96 -DAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRG----------------RADDTDDVIL  158 (201)
T ss_dssp             -GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHC----------------CTTCSHHHHH
T ss_pred             -cCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC----------------CCCCCHHHHH
Confidence             235789999999999988776543     248999999999999999998874                1245677899


Q ss_pred             HHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHH
Q 024067          215 EKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALH  258 (273)
Q Consensus       215 ~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~  258 (273)
                      +|+..|.....++.++|  ...++.||+++++++++++|...+.
T Consensus       159 ~r~~~~~~~~~~~~~~~--~~~~~~Id~~~~~eev~~~I~~~l~  200 (201)
T 2cdn_A          159 NRMKVYRDETAPLLEYY--RDQLKTVDAVGTMDEVFARALRALG  200 (201)
T ss_dssp             HHHHHHHHHTTTHHHHT--TTTEEEEECCSCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhHHHHHHh--cCcEEEEeCCCCHHHHHHHHHHHHc
Confidence            99999988888888877  3458889999999999999998764

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=99.95  E-value=5.1e-27  Score=196.35  Aligned_cols=186  Identities=25%  Similarity=0.423  Sum_probs=157.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~  141 (273)
                      ++++|+|+|+|||||||+|+.|++++|++++++|++++.....+++.++.+.+++.+|..++++.+..++.+.+.... .
T Consensus        11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~-~   89 (199)
T 2bwj_A           11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASL-G   89 (199)
T ss_dssp             HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHT-T
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccc-c
Confidence            467899999999999999999999999999999999998876778889999999999999999888888877765431 2


Q ss_pred             CcceEEEeCCCCCHHHHHHHHhh-CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHH
Q 024067          142 GESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIY  220 (273)
Q Consensus       142 ~~~g~IlDg~P~~~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y  220 (273)
                      .+.+||+||+|.+..|+..|... ..||++|+|++|++++.+|+.+|....            .+.+++.+.+.+|+..|
T Consensus        90 ~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~------------~~~~~~~~~~~~r~~~~  157 (199)
T 2bwj_A           90 DTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSRSS------------LPVDDTTKTIAKRLEAY  157 (199)
T ss_dssp             SCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCCCC------------SCHHHHHHHHHHHHHHH
T ss_pred             cCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCCCC------------CCCCCCHHHHHHHHHHH
Confidence            35789999999999988877543 378999999999999999999886311            12344567889999999


Q ss_pred             HHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067          221 AEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ  260 (273)
Q Consensus       221 ~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~  260 (273)
                      .....++.++|...+.++.||+++++++++++|...+...
T Consensus       158 ~~~~~~~~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~~~  197 (199)
T 2bwj_A          158 YRASIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAIDSI  197 (199)
T ss_dssp             HHHHHHHHHHHHHHSEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence            8888888889987777788999999999999999988754

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=99.95  E-value=5e-27  Score=194.73  Aligned_cols=178  Identities=27%  Similarity=0.478  Sum_probs=150.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~  141 (273)
                      +++.|+|+|+|||||||+++.|++++|++++++|+++++.+.++++.++.+.+++.+|..++++.+..++.+.+.     
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~-----   77 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELA-----   77 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCC-----
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhc-----
Confidence            578999999999999999999999999999999999998877888899999999999999999888777766543     


Q ss_pred             CcceEEEeCCCCCHHHHHHHHhhC-----CCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHH
Q 024067          142 GESGFILDGIPRTRIQAEILDQIV-----DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEK  216 (273)
Q Consensus       142 ~~~g~IlDg~P~~~~qa~~l~~~~-----~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~r  216 (273)
                        .++|+||+|++..|...++...     .|+.+|+|++|++++.+|+..|....  +          +.+++.+.+++|
T Consensus        78 --~~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~--~----------r~~~~~~~~~~r  143 (186)
T 3cm0_A           78 --ERVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAELE--G----------RSDDNEETVRRR  143 (186)
T ss_dssp             --SEEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHHH--T----------CSSCCHHHHHHH
T ss_pred             --CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccccC--C----------CCCCCHHHHHHH
Confidence              3499999999988877655321     37899999999999999998874100  0          235567889999


Q ss_pred             HHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHH
Q 024067          217 FRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALH  258 (273)
Q Consensus       217 l~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~  258 (273)
                      +..|.....++.++|...+.++.||++.++++++++|.+.+.
T Consensus       144 ~~~~~~~~~~l~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~  185 (186)
T 3cm0_A          144 LEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYARIRAALG  185 (186)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHhc
Confidence            999988888888999887778999999999999999998763

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=99.95  E-value=2.2e-26  Score=191.47  Aligned_cols=186  Identities=22%  Similarity=0.404  Sum_probs=152.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHcc-CCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcc-
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS-PRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY-  139 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~-~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~-  139 (273)
                      +++.|+|+|+|||||||+|+.|++.+|+++|++|+++++... +.+.+++.+++++.+|..+++++...++...+.... 
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~   81 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMA   81 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhhc
Confidence            367899999999999999999999999999999999987653 456788899999999999998877776665554321 


Q ss_pred             -cCCcceEEEeCCCCCHHHHHHHHhh----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHH
Q 024067          140 -YRGESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWK  214 (273)
Q Consensus       140 -~~~~~g~IlDg~P~~~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~  214 (273)
                       .....+||+||+|.+..+...+...    ..+|++|+|++|++++++|+..|....            .+.+++.+.++
T Consensus        82 ~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~------------~r~~~~~~~~~  149 (196)
T 1tev_A           82 ANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSS------------GRSDDNRESLE  149 (196)
T ss_dssp             HCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTS------------SCCSCCHHHHH
T ss_pred             cccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccccC------------CCCCCCHHHHH
Confidence             1235789999999998887655432    257899999999999999998775210            13456678889


Q ss_pred             HHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067          215 EKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL  259 (273)
Q Consensus       215 ~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~  259 (273)
                      +++..|.....++.++|.+.+.++.||++.++++++++|.+.+..
T Consensus       150 ~~~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~  194 (196)
T 1tev_A          150 KRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDK  194 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence            999999999999999999877788999999999999999999865

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.93  E-value=5.7e-24  Score=184.72  Aligned_cols=197  Identities=24%  Similarity=0.381  Sum_probs=162.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~  141 (273)
                      ++.+|+|+|+|||||||+++.|++++|+.+++.|++++......++.+..+..++.++..+++..+.+.+...+...   
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~---  102 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR---  102 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC---
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc---
Confidence            57899999999999999999999999999999999998766556678888888888898899888888877766542   


Q ss_pred             CcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCccccccc-CC------------CCCC--C
Q 024067          142 GESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRL-GG------------ARFS--A  206 (273)
Q Consensus       142 ~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~-~~------------~~~~--~  206 (273)
                      ...+|++||+|++..|++.+.....++++|+|+++++++++|+..|..+..+|+.+.. ..            .|..  .
T Consensus       103 ~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~~~~P~~lllD~~~~EP~~~ld  182 (246)
T 2bbw_A          103 RGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQE  182 (246)
T ss_dssp             TTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTSCCSSTTBCTTTCCBCBCCG
T ss_pred             CCCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCCCccccccCCCcccccccccccccccCC
Confidence            2467999999999887777766667899999999999999999988877777765332 11            1211  1


Q ss_pred             CCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcCC
Q 024067          207 ADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHM  262 (273)
Q Consensus       207 ~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~~  262 (273)
                      +++.+.+.+++..|.+...++.+||.+.+.++.||++.+ ++|+++|.+.+.....
T Consensus       183 ~~~~~~i~~~l~~~~~~~~~v~~~~~~~~~~~~id~~~~-~~v~~~i~~~l~~~~~  237 (246)
T 2bbw_A          183 DDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTET-NKIWPYVYTLFSNKIT  237 (246)
T ss_dssp             GGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHHHHHHHTTSC
T ss_pred             CCcHHHHHHHHHHHHHhHHHHHHHHhhcCcEEEECCCCc-HHHHHHHHHHHHhhCC
Confidence            335678899999999999999999998888999999888 9999999999987644

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=99.82  E-value=7.3e-19  Score=142.77  Aligned_cols=170  Identities=16%  Similarity=0.131  Sum_probs=119.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCC----ChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcc
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPR----SALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY  139 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~----~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~  139 (273)
                      +.|+|+|+|||||||+++.| +.+|++++++++++++.....    ...+.....+...   .+++.+..++.+.+..  
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~--   75 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREI---YGDGVVARLCVEELGT--   75 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHH---HCTTHHHHHHHHHHCS--
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhh---CCHHHHHHHHHHHHHh--
Confidence            57899999999999999999 999999999999999765422    2233333333332   1233455555565632  


Q ss_pred             cCCcceEEEeCCCCCHHHHHHHHhhC-CCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHH
Q 024067          140 YRGESGFILDGIPRTRIQAEILDQIV-DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFR  218 (273)
Q Consensus       140 ~~~~~g~IlDg~P~~~~qa~~l~~~~-~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~  218 (273)
                       .....+|+||+ ++..+.+.|.... .++++|+|++|.+++.+|+..|....              ...+.+.+.+++.
T Consensus        76 -~~~~~vi~dg~-~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~--------------~~~~~~~~~~r~~  139 (179)
T 3lw7_A           76 -SNHDLVVFDGV-RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSD--------------DSKEISELIRRDR  139 (179)
T ss_dssp             -CCCSCEEEECC-CCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC------------------CCCHHHHHHHHH
T ss_pred             -cCCCeEEEeCC-CCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCC--------------CcchHHHHHHHHH
Confidence             23578999999 8999988887654 67899999999999999999886310              1234556666664


Q ss_pred             HHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067          219 IYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL  259 (273)
Q Consensus       219 ~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~  259 (273)
                      ....  .+...|+...+  +.||++++++++.++|...+..
T Consensus       140 ~~~~--~~~~~~~~~ad--~vId~~~~~~~~~~~i~~~l~~  176 (179)
T 3lw7_A          140 EELK--LGIGEVIAMAD--YIITNDSNYEEFKRRCEEVTDR  176 (179)
T ss_dssp             HHHH--HTHHHHHHTCS--EEEECCSCHHHHHHHHHHHHHH
T ss_pred             hhhc--cChHhHHHhCC--EEEECCCCHHHHHHHHHHHHHH
Confidence            3221  22344444444  4577778999999999998864

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=99.79  E-value=1e-17  Score=138.86  Aligned_cols=161  Identities=16%  Similarity=0.126  Sum_probs=110.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh---CCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHH-----------H
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIF-----------A  129 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~---g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~-----------~  129 (273)
                      +.|+|+|+|||||||+++.|++++   |++++++++      ...+..++.+++++.+|...++....           .
T Consensus         1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~------~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~   74 (195)
T 2pbr_A            1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE------PGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEE   74 (195)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC------CCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999998   999999863      34567888888888878665553221           1


Q ss_pred             HHHHHHHhcccCCcceEEEe----------CCCCCHH--HHHHHHh----hCCCceEEEEccCHHHHHHHHhcCCcCCCc
Q 024067          130 LLSKRLEEGYYRGESGFILD----------GIPRTRI--QAEILDQ----IVDVDLVINFKSIEDQLVKRNLESEAFSPH  193 (273)
Q Consensus       130 ll~~~l~~~~~~~~~g~IlD----------g~P~~~~--qa~~l~~----~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~  193 (273)
                      .+...+..     +..+|+|          |+|+...  +...+..    ...||++|+|++|++++.+|+.+|..    
T Consensus        75 ~i~~~l~~-----~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~----  145 (195)
T 2pbr_A           75 KIIPDLKR-----DKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKNR----  145 (195)
T ss_dssp             THHHHHHT-----TCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTTC----
T ss_pred             HHHHHHhC-----CCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccCc----
Confidence            22222322     3567777          6666432  3333321    12689999999999999999986431    


Q ss_pred             ccccccCCCCCCCCCcHHHHHHHH-HHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067          194 KEFLRLGGARFSAADAASAWKEKF-RIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ  260 (273)
Q Consensus       194 ~~~y~~~~~~~~~~d~~e~~~~rl-~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~  260 (273)
                                  .+ .++ +.+++ ..|.+..    .+|   +.++.||+++++++++++|.+.+...
T Consensus       146 ------------~~-~~~-~~~~~~~~~~~~~----~~~---~~~~~Id~~~~~~~~~~~i~~~l~~~  192 (195)
T 2pbr_A          146 ------------FE-NKE-FLEKVRKGFLELA----KEE---ENVVVIDASGEEEEVFKEILRALSGV  192 (195)
T ss_dssp             ------------CC-CHH-HHHHHHHHHHHHH----HHS---TTEEEEETTSCHHHHHHHHHHHHHTT
T ss_pred             ------------cc-hHH-HHHHHHHHHHHHH----hhC---CCEEEEECCCCHHHHHHHHHHHHHHH
Confidence                        12 233 44444 4454332    223   45789999999999999999998754

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=99.77  E-value=1.4e-17  Score=143.39  Aligned_cols=176  Identities=14%  Similarity=0.058  Sum_probs=116.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCC--CeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV--PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFAL-LSKRLEE  137 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~--~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~l-l~~~l~~  137 (273)
                      .+++.|+|+|+|||||||+++.|++.++.  .++.+      ..+.+++.++.+++++.++....+....-+ ...+...
T Consensus        24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~------~~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~~   97 (229)
T 4eaq_A           24 AMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT------REPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREH   97 (229)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE------CTTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee------cCCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999974  44433      345678899999999988875444433221 1222221


Q ss_pred             c------ccCCcceEEEe----------CCCCCHHHHH--HHHhh----CCCceEEEEccCHHHHHHHHhcCCcCCCccc
Q 024067          138 G------YYRGESGFILD----------GIPRTRIQAE--ILDQI----VDVDLVINFKSIEDQLVKRNLESEAFSPHKE  195 (273)
Q Consensus       138 ~------~~~~~~g~IlD----------g~P~~~~qa~--~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~  195 (273)
                      .      ....+..+|+|          |+|++..+..  .+..+    ..||++|+|++|++++.+|+.+|....    
T Consensus        98 ~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~----  173 (229)
T 4eaq_A           98 LVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQ----  173 (229)
T ss_dssp             CCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC--------
T ss_pred             HHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCc----
Confidence            0      01134678999          9998765543  33332    479999999999999999999885311    


Q ss_pred             ccccCCCCCCCCCcHHHHHHHHHH-HHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067          196 FLRLGGARFSAADAASAWKEKFRI-YAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ  260 (273)
Q Consensus       196 ~y~~~~~~~~~~d~~e~~~~rl~~-y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~  260 (273)
                              .+.++....+.+|+.. |.+.    .+.|  .+.++.||+++++++|+++|.+.|...
T Consensus       174 --------dr~e~~~~~~~~rv~~~y~~l----~~~~--~~~~~vIDa~~s~eev~~~I~~~l~~~  225 (229)
T 4eaq_A          174 --------NRLDQEDLKFHEKVIEGYQEI----IHNE--SQRFKSVNADQPLENVVEDTYQTIIKY  225 (229)
T ss_dssp             ---------CCCHHHHHHHHHHHHHHHHH----TTTC--TTTEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             --------cchhhhhHHHHHHHHHHHHHH----HHhC--CCCEEEEeCCCCHHHHHHHHHHHHHHH
Confidence                    1223334455555543 4332    2222  246899999999999999999998754

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=99.74  E-value=2.6e-17  Score=138.14  Aligned_cols=167  Identities=14%  Similarity=0.172  Sum_probs=108.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHhccc
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE-GKLVPEDVIFALLSKRLEEGYY  140 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~-g~~~~~~~~~~ll~~~l~~~~~  140 (273)
                      ++..|+|+|+|||||||+++.|++.+|++++++|++++....      ..+.+++.. |.....+....++....     
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g------~~i~~~~~~~~~~~~~~~e~~~l~~l~-----   92 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFH------KTVGELFTERGEAGFRELERNMLHEVA-----   92 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHT------SCHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhC------CcHHHHHHhcChHHHHHHHHHHHHHHh-----
Confidence            567899999999999999999999999999999998876432      122232221 11111122222322211     


Q ss_pred             CCcceEEEe---CCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHh-cCCcCCCcccccccCCCCCCCCCcHHHHHHH
Q 024067          141 RGESGFILD---GIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNL-ESEAFSPHKEFLRLGGARFSAADAASAWKEK  216 (273)
Q Consensus       141 ~~~~g~IlD---g~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~-~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~r  216 (273)
                       ...++|++   |.+......+.+.   .++.+|+|++|.+++.+|+. .+...+            ...+++.+.+.++
T Consensus        93 -~~~~~vi~~ggg~~~~~~~~~~l~---~~~~vi~L~~~~e~l~~Rl~~~~~~Rp------------~~~~~~~~~~~~~  156 (199)
T 3vaa_A           93 -EFENVVISTGGGAPCFYDNMEFMN---RTGKTVFLNVHPDVLFRRLRIAKQQRP------------ILQGKEDDELMDF  156 (199)
T ss_dssp             -TCSSEEEECCTTGGGSTTHHHHHH---HHSEEEEEECCHHHHHHHHHHTGGGCG------------GGTTCCHHHHHHH
T ss_pred             -hcCCcEEECCCcEEccHHHHHHHH---cCCEEEEEECCHHHHHHHHhcCCCCCC------------CcCCCChhhHHHH
Confidence             24678888   4555555444443   36799999999999999998 443211            1123344556666


Q ss_pred             HHHHHHhhHHHHHHHHhcCcEEEEeCCC-ChhHHHHHHHHHHHhc
Q 024067          217 FRIYAEQGKSLEDYYSKQRKLLNFQVAA-APGETWQGLLSALHLQ  260 (273)
Q Consensus       217 l~~y~~~~~~l~~~y~~~~~~~~id~~~-s~~ev~~~I~~~l~~~  260 (273)
                      +..+.+..   ..+|...  -+.||+++ ++++++++|.+.+...
T Consensus       157 i~~~~~~r---~~~y~~a--d~~Idt~~~s~ee~~~~I~~~l~~~  196 (199)
T 3vaa_A          157 IIQALEKR---APFYTQA--QYIFNADELEDRWQIESSVQRLQEL  196 (199)
T ss_dssp             HHHHHHHH---HHHHTTS--SEEEECCCCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH---HHHHhhC--CEEEECCCCCHHHHHHHHHHHHHHH
Confidence            65554433   3466653  35678776 8999999999998764

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=99.72  E-value=1.4e-16  Score=131.58  Aligned_cols=170  Identities=15%  Similarity=0.180  Sum_probs=100.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC-----CCeechhHHHHHHc-cCCChHHHHHHHHHHCCCCCCH--HHHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQEL-SPRSALYKQIANAVNEGKLVPE--DVIFALLSKR  134 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g-----~~~is~~dllr~~~-~~~~~~g~~i~~~l~~g~~~~~--~~~~~ll~~~  134 (273)
                      ++.|+|+|+|||||||+++.|+++++     +.+++.++++++.+ ......+.   .  ..+...+.  ......+..+
T Consensus         1 M~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~   75 (194)
T 1nks_A            1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDR---D--EMRKLSVEKQKKLQIDAAKG   75 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSH---H--HHTTSCHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccch---h--hhhcCCHHHHHHHHHHHHHH
Confidence            36899999999999999999999998     88999899887654 21111000   0  01222222  2222222222


Q ss_pred             HHhcc-cCCcceEEEeCCCCCHHH--------HHHHHhhCCCceEEEEccCHHHHHHH-Hhc--CCcCCCcccccccCCC
Q 024067          135 LEEGY-YRGESGFILDGIPRTRIQ--------AEILDQIVDVDLVINFKSIEDQLVKR-NLE--SEAFSPHKEFLRLGGA  202 (273)
Q Consensus       135 l~~~~-~~~~~g~IlDg~P~~~~q--------a~~l~~~~~~d~vI~L~~~~e~l~~R-l~~--R~~~~~~~~~y~~~~~  202 (273)
                      +...- ...+..+|+||++....|        ...+... .|+++|+|++|++++++| +..  |...+           
T Consensus        76 i~~~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~vi~l~~~~~~~~~rr~~~~~R~~~~-----------  143 (194)
T 1nks_A           76 IAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEI-NPSVIFLLEADPKIILSRQKRDTTRNRND-----------  143 (194)
T ss_dssp             HHHHHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHHH-CCSEEEEEECCHHHHHHHHHHCTTTCCCC-----------
T ss_pred             HHHHhhccCCCEEEECCchhhccccccccCCCHHHHHhc-CCCEEEEEeCCHHHHHHHHHhhcccCCCC-----------
Confidence            22210 013578999998654433        2333332 589999999999998866 656  53200           


Q ss_pred             CCCCCCcHHHH--HHHHHHHHHhhHHHHHHHHhcCcEEEE-eCCCChhHHHHHHHHHH
Q 024067          203 RFSAADAASAW--KEKFRIYAEQGKSLEDYYSKQRKLLNF-QVAAAPGETWQGLLSAL  257 (273)
Q Consensus       203 ~~~~~d~~e~~--~~rl~~y~~~~~~l~~~y~~~~~~~~i-d~~~s~~ev~~~I~~~l  257 (273)
                          ....+.+  .+++...   .......|. ...++.| |+++++++++++|.+.|
T Consensus       144 ----~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~I~d~~~~~e~v~~~I~~~l  193 (194)
T 1nks_A          144 ----YSDESVILETINFARY---AATASAVLA-GSTVKVIVNVEGDPSIAANEIIRSM  193 (194)
T ss_dssp             ----CCSHHHHHHHHHHHHH---HHHHHHHHH-TCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred             ----ccCHHHHHHHHHHHHH---HHHHHHHhc-CCcEEEEeCCCCCHHHHHHHHHHHh
Confidence                1112222  2222221   122333342 2457888 98899999999998876

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=99.72  E-value=1.3e-15  Score=128.93  Aligned_cols=168  Identities=13%  Similarity=0.062  Sum_probs=107.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh--CCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHH-----------
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLL--EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFA-----------  129 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~--g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~-----------  129 (273)
                      ++.|+|.|++||||||+++.|++.+  |..++-+      ..+.+++.|+.+++++.++...+.....-           
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~------~eP~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~   75 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT------REPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLV   75 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE------ESSTTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEe------eCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999998  4444432      23567899999999998887766543322           


Q ss_pred             -HHHHHHHhcccCCcceEEEeCCC----------CC--HHHHHHHHh----hCCCceEEEEccCHHHHHHHHhcCCcCCC
Q 024067          130 -LLSKRLEEGYYRGESGFILDGIP----------RT--RIQAEILDQ----IVDVDLVINFKSIEDQLVKRNLESEAFSP  192 (273)
Q Consensus       130 -ll~~~l~~~~~~~~~g~IlDg~P----------~~--~~qa~~l~~----~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~  192 (273)
                       .+...+..     +..+|.|.|.          +.  ......+..    ...||++|+|++|+++.++|+.+|+... 
T Consensus        76 ~~i~p~l~~-----g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~~-  149 (205)
T 4hlc_A           76 LKVIPALKE-----GKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQ-  149 (205)
T ss_dssp             HTHHHHHHT-----TCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC------
T ss_pred             HHHHHHHHc-----CCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCCcc-
Confidence             22223332     3556777543          22  222233332    2479999999999999999998876321 


Q ss_pred             cccccccCCCCCCCCCcHHHHHHHH-HHHHHhhHHHHHHHHh-cCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067          193 HKEFLRLGGARFSAADAASAWKEKF-RIYAEQGKSLEDYYSK-QRKLLNFQVAAAPGETWQGLLSALHLQ  260 (273)
Q Consensus       193 ~~~~y~~~~~~~~~~d~~e~~~~rl-~~y~~~~~~l~~~y~~-~~~~~~id~~~s~~ev~~~I~~~l~~~  260 (273)
                                 .+.+.....+.+++ +.|.+.       +++ .+.++.||+++++++|.++|.+.|...
T Consensus       150 -----------dr~e~~~~~f~~~v~~~Y~~l-------~~~~~~~~~~IDa~~~~e~V~~~i~~~i~~~  201 (205)
T 4hlc_A          150 -----------NRLDQEDLKFHEKVIEGYQEI-------IHNESQRFKSVNADQPLENVVEDTYQTIIKY  201 (205)
T ss_dssp             -------------CCHHHHHHHHHHHHHHHHH-------HHSCCTTEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             -----------cchhccCHHHHHHHHHHHHHH-------HHhCCCCEEEEECCCCHHHHHHHHHHHHHHH
Confidence                       01111112233333 233321       222 246999999999999999998888653

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=99.71  E-value=2.8e-15  Score=127.64  Aligned_cols=169  Identities=14%  Similarity=0.114  Sum_probs=111.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC---CCeechhHHHHHHccCCChHHHHHHHHHHCCC--CCCHHHH---------
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLE---VPHISMGSLVRQELSPRSALYKQIANAVNEGK--LVPEDVI---------  127 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g---~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~--~~~~~~~---------  127 (273)
                      +++.|+|.|++||||||+++.|++.++   +.++.+      ..+.++++|+.+++++.++.  .+.....         
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~------~~p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~   78 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT------REPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARA   78 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE------ESSCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc------cCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999999999985   444433      22467899999999998874  2333221         


Q ss_pred             ---HHHHHHHHHhcccCCcceEEEeCCCC------------CHHHHHHHHh----hCCCceEEEEccCHHHHHHHHhcCC
Q 024067          128 ---FALLSKRLEEGYYRGESGFILDGIPR------------TRIQAEILDQ----IVDVDLVINFKSIEDQLVKRNLESE  188 (273)
Q Consensus       128 ---~~ll~~~l~~~~~~~~~g~IlDg~P~------------~~~qa~~l~~----~~~~d~vI~L~~~~e~l~~Rl~~R~  188 (273)
                         .+.+...+..     +..+|.|.|..            .......+..    ...||++|+|++|++++++|+..|.
T Consensus        79 ~~~~~~i~p~l~~-----g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~  153 (213)
T 4edh_A           79 QHLAGVIRPALAR-----GAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARG  153 (213)
T ss_dssp             HHHHHTHHHHHHT-----TCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCS
T ss_pred             HHHHHHHHHHHHC-----CCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence               1122223332     45678885421            2233333333    2579999999999999999999885


Q ss_pred             cCCCcccccccCCCCCCCCC-cHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067          189 AFSPHKEFLRLGGARFSAAD-AASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ  260 (273)
Q Consensus       189 ~~~~~~~~y~~~~~~~~~~d-~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~  260 (273)
                      ...             +.+. ..+.+++..+.|.+.    .+.|  .+.++.||+++++++|.++|.+.|...
T Consensus       154 ~~d-------------r~E~~~~~~~~rv~~~y~~l----~~~~--~~~~~vIDa~~s~eeV~~~I~~~l~~~  207 (213)
T 4edh_A          154 RLD-------------RFEQEDRRFFEAVRQTYLQR----AAQA--PERYQVLDAGLPLAEVQAGLDRLLPNL  207 (213)
T ss_dssp             SCC-------------TTTTSCHHHHHHHHHHHHHH----HHHC--TTTEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             CcC-------------cccccHHHHHHHHHHHHHHH----HHHC--CCcEEEEeCCCCHHHHHHHHHHHHHHH
Confidence            210             1122 233333333455432    2223  246999999999999999999988754

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=99.71  E-value=1.5e-16  Score=136.80  Aligned_cols=173  Identities=13%  Similarity=0.092  Sum_probs=109.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechh---HHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHH--------
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG---SLVRQELSPRSALYKQIANAVNEGKLVPEDVIFA--------  129 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~---dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~--------  129 (273)
                      .+++.|+|.|++||||||+++.|++.++..+++++   .+.+  .+.++++|+.|++++.++...+.....-        
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r--ep~~t~~g~~ir~~l~~~~~~~~~~~llf~a~R~~~  100 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR--EPGGTRLGETLREILLNQPMDLETEALLMFAGRREH  100 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE--SSSSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec--CCCCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            36789999999999999999999999854322221   0122  2467899999999998886554433222        


Q ss_pred             ---HHHHHHHhcccCCcceEEEeCCCCC------------HHHHHHHHh----hCCCceEEEEccCHHHHHHHHhcCCcC
Q 024067          130 ---LLSKRLEEGYYRGESGFILDGIPRT------------RIQAEILDQ----IVDVDLVINFKSIEDQLVKRNLESEAF  190 (273)
Q Consensus       130 ---ll~~~l~~~~~~~~~g~IlDg~P~~------------~~qa~~l~~----~~~~d~vI~L~~~~e~l~~Rl~~R~~~  190 (273)
                         .+...+..     +..+|.|.|..+            ......+..    ...||++|+|++|++++++|+..|...
T Consensus       101 ~~~~i~p~l~~-----g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~~  175 (227)
T 3v9p_A          101 LALVIEPALAR-----GDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRMP  175 (227)
T ss_dssp             HHHTHHHHHHT-----TCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCCCC
T ss_pred             HHHHHHHHHHc-----CCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccCc
Confidence               22222322     456888966432            222233332    247999999999999999999888521


Q ss_pred             CCcccccccCCCCCCCCCcHHHHHHHH-HHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067          191 SPHKEFLRLGGARFSAADAASAWKEKF-RIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL  259 (273)
Q Consensus       191 ~~~~~~y~~~~~~~~~~d~~e~~~~rl-~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~  259 (273)
                      .             +.+.....+.+++ +.|.+.    .+.|  .+.++.||+++++++|.++|.+.|..
T Consensus       176 d-------------r~E~~~~ef~~rv~~~Y~~l----a~~~--~~~~~vIDa~~s~eeV~~~I~~~l~~  226 (227)
T 3v9p_A          176 D-------------KFESESDAFFARTRAEYLRR----AQEA--PHRFVIVDSSEPIAQIRKQLEGVLAA  226 (227)
T ss_dssp             ----------------CCHHHHHHHHHHHHHHHH----HHHC--TTTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             c-------------chhhhhHHHHHHHHHHHHHH----HHHh--cCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence            0             1122222333443 445432    2222  24699999999999999999998864

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=99.71  E-value=3e-16  Score=131.63  Aligned_cols=161  Identities=15%  Similarity=0.132  Sum_probs=110.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHH---HHHHHHHhc
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFA---LLSKRLEEG  138 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~---ll~~~l~~~  138 (273)
                      ++++|+|+|+|||||||+++.|++.+|+.+|+.|++.....          ......|....+.....   .+...+   
T Consensus        17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~----------~~~~~~g~~~~~~~~~~~~~~l~~~~---   83 (202)
T 3t61_A           17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPEN----------IRKMSEGIPLTDDDRWPWLAAIGERL---   83 (202)
T ss_dssp             CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHH----------HHHHHHTCCCCHHHHHHHHHHHHHHH---
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhh----------HHHHhcCCCCCchhhHHHHHHHHHHH---
Confidence            46789999999999999999999999999999988753210          11122344444432222   222322   


Q ss_pred             ccCCcceEEEeCCCCCHHHHHHHHhhC-CCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHH
Q 024067          139 YYRGESGFILDGIPRTRIQAEILDQIV-DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKF  217 (273)
Q Consensus       139 ~~~~~~g~IlDg~P~~~~qa~~l~~~~-~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl  217 (273)
                        ..+.++|+|+.+....+.+.+.... .++.+|+|+++.+++.+|+.+|..+.                ...+.+..++
T Consensus        84 --~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~----------------~~~~~~~~~~  145 (202)
T 3t61_A           84 --ASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGHF----------------MPSSLLQTQL  145 (202)
T ss_dssp             --TSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSSC----------------CCHHHHHHHH
T ss_pred             --hcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhccC----------------CCHHHHHHHH
Confidence              2357899999888877777776543 45799999999999999999886321                1133444443


Q ss_pred             HHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcC
Q 024067          218 RIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQH  261 (273)
Q Consensus       218 ~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~  261 (273)
                      ..+.    +   .|. ....+.||++.+++++.++|...|....
T Consensus       146 ~~~~----~---~~~-~~~~~~Id~~~~~~e~~~~I~~~l~~~~  181 (202)
T 3t61_A          146 ETLE----D---PRG-EVRTVAVDVAQPLAEIVREALAGLARLA  181 (202)
T ss_dssp             HHCC----C---CTT-STTEEEEESSSCHHHHHHHHHHHHHHHH
T ss_pred             HhcC----C---CCC-CCCeEEEeCCCCHHHHHHHHHHHHHHhh
Confidence            3332    1   121 2246789999999999999999987653

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=99.70  E-value=4.6e-17  Score=137.02  Aligned_cols=171  Identities=11%  Similarity=0.086  Sum_probs=114.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHH-------H
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSK-------R  134 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~-------~  134 (273)
                      +++.|+|+|+|||||||+++.|+++++.+++++ +++++ ...+++.++.+++++..+..++......+...       .
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~-~~~~~-~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV-KHLYF-PNRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMNE   86 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE-EEEES-SCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE-EEEec-CCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999999888887 44442 23357888889998877776776543332221       1


Q ss_pred             HHhcccCCcceEEEeCCCCCH--HHH-------HHHHh----hCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCC
Q 024067          135 LEEGYYRGESGFILDGIPRTR--IQA-------EILDQ----IVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGG  201 (273)
Q Consensus       135 l~~~~~~~~~g~IlDg~P~~~--~qa-------~~l~~----~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~  201 (273)
                      +... ...+..+|+|+++.+.  .|.       ..+..    ...||++|+|++|++++.+|+..|..            
T Consensus        87 i~~~-l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~------------  153 (212)
T 2wwf_A           87 IKSL-LLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGEE------------  153 (212)
T ss_dssp             HHHH-HHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTSS------------
T ss_pred             HHHH-HhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCcc------------
Confidence            1110 0124679999998641  221       22221    13689999999999999999865421            


Q ss_pred             CCCCCCCcHHHHHHHHH-HHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067          202 ARFSAADAASAWKEKFR-IYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ  260 (273)
Q Consensus       202 ~~~~~~d~~e~~~~rl~-~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~  260 (273)
                         +.++  +.+.+++. .|.+...        ...++.||+++++++++++|.+.+...
T Consensus       154 ---r~~~--~~~~~~~~~~~~~~~~--------~~~~~~Id~~~~~~~~~~~i~~~l~~~  200 (212)
T 2wwf_A          154 ---IYEK--VETQKKIYETYKHFAH--------EDYWINIDATRKIEDIHNDIVKEVTKI  200 (212)
T ss_dssp             ---TTCS--HHHHHHHHHHGGGGTT--------CTTEEEEECSSCHHHHHHHHHHHHTTS
T ss_pred             ---cccH--HHHHHHHHHHHHHHhc--------cCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence               1121  24445553 2322111        234788999999999999999999765

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=99.69  E-value=1.7e-16  Score=128.84  Aligned_cols=162  Identities=17%  Similarity=0.204  Sum_probs=99.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhcccCC
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYRG  142 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~-~g~~~~~~~~~~ll~~~l~~~~~~~  142 (273)
                      ++|+|+|+|||||||+++.|++++|++++++|++.++..      |..+.+++. .|.....++...++ ..+..     
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~l-~~l~~-----   68 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKRE------GLSIPQIFEKKGEAYFRKLEFEVL-KDLSE-----   68 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH------TSCHHHHHHHSCHHHHHHHHHHHH-HHHTT-----
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHc------CCCHHHHHHHhChHHHHHHHHHHH-HHHhc-----
Confidence            479999999999999999999999999999999987643      222333332 22211111112222 22221     


Q ss_pred             cceEEEe-C--CCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHH
Q 024067          143 ESGFILD-G--IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRI  219 (273)
Q Consensus       143 ~~g~IlD-g--~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~  219 (273)
                      ...+|++ |  .+........|.   .++++|+|++|++++++|+..|...+  .           ..+..+.+++++..
T Consensus        69 ~~~~Vi~~g~~~~~~~~~~~~l~---~~~~~i~l~~~~e~~~~R~~~r~~r~--~-----------~~~~~~~i~~~~~~  132 (168)
T 2pt5_A           69 KENVVISTGGGLGANEEALNFMK---SRGTTVFIDIPFEVFLERCKDSKERP--L-----------LKRPLDEIKNLFEE  132 (168)
T ss_dssp             SSSEEEECCHHHHTCHHHHHHHH---TTSEEEEEECCHHHHHHHCBCTTCCB--G-----------GGSCGGGTHHHHHH
T ss_pred             cCCeEEECCCCEeCCHHHHHHHH---cCCEEEEEECCHHHHHHHHhCCCCCC--C-----------CcchHHHHHHHHHH
Confidence            3456665 4  223333333443   47899999999999999998874211  0           00112223333321


Q ss_pred             HHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcCC
Q 024067          220 YAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHM  262 (273)
Q Consensus       220 y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~~  262 (273)
                             ...+|.+ ..++. +++.+++++.++|.+.+....+
T Consensus       133 -------~~~~~~~-~~~~i-~~~~~~~~~~~~i~~~l~~~~~  166 (168)
T 2pt5_A          133 -------RRKIYSK-ADIKV-KGEKPPEEVVKEILLSLEGNAL  166 (168)
T ss_dssp             -------HHHHHTT-SSEEE-ECSSCHHHHHHHHHHHHHTSCC
T ss_pred             -------HHHHHHh-CCEEE-CCCCCHHHHHHHHHHHHHhccC
Confidence                   1234554 34555 7778999999999999986543

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=99.68  E-value=7.5e-16  Score=126.00  Aligned_cols=162  Identities=16%  Similarity=0.078  Sum_probs=92.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH-HhCCCeechhHHHHHHccCCCh-----HHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSK-LLEVPHISMGSLVRQELSPRSA-----LYKQIANAVNEGKLVPEDVIFALLSKRLE  136 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~-~~g~~~is~~dllr~~~~~~~~-----~g~~i~~~l~~g~~~~~~~~~~ll~~~l~  136 (273)
                      +..|+|+|+|||||||+++.|++ .+|+.+|++|. +++.....+.     +...-..       ...++....+...+.
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~-~r~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~   73 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDD-YRQSIMAHEERDEYKYTKKKEG-------IVTGMQFDTAKSILY   73 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHH-HHHHHTTSCCGGGCCCCHHHHH-------HHHHHHHHHHHHHHT
T ss_pred             CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHH-HHHHhhCCCccchhhhchhhhh-------HHHHHHHHHHHHHHh
Confidence            46899999999999999999999 68999999854 5544433211     1000000       012233444555552


Q ss_pred             hcccCCcceEEEeCCCCCHHHHHHHHhh----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHH
Q 024067          137 EGYYRGESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASA  212 (273)
Q Consensus       137 ~~~~~~~~g~IlDg~P~~~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~  212 (273)
                      ..  ..+.++|+|+++.+..+.+.|...    ..+..+|+|+||.+++.+|+..|..+                ..+++.
T Consensus        74 ~~--~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~----------------~~~~~~  135 (181)
T 1ly1_A           74 GG--DSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTK----------------AVPIDV  135 (181)
T ss_dssp             SC--SSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGGG----------------CCCHHH
T ss_pred             hc--cCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhccccC----------------CCCHHH
Confidence            10  235789999999988777666532    33557999999999999999988632                224677


Q ss_pred             HHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067          213 WKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ  260 (273)
Q Consensus       213 ~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~  260 (273)
                      +++++..|....     .+   . .+.+|++. ++++...|...|...
T Consensus       136 i~~~~~~~~~~~-----~~---~-~~~id~~~-~~~v~~~i~~~l~~~  173 (181)
T 1ly1_A          136 LRSMYKSMREYL-----GL---P-VYNGTPGK-PKAVIFDVDGTLAKM  173 (181)
T ss_dssp             HHHHHHHHHHHH-----TC---C-CC----------------------
T ss_pred             HHHHHHHhhccC-----CC---C-ccccCCCC-Cceeeehhhhhhhcc
Confidence            888888886541     11   1 12377665 488888888877663

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=99.68  E-value=1.1e-15  Score=127.79  Aligned_cols=163  Identities=13%  Similarity=0.085  Sum_probs=106.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh-CCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHH---------
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALL---------  131 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~-g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll---------  131 (273)
                      +++.|+|+|+|||||||+++.|++++ |+++++++.     ....++.|+.+++++.++..+..... .++         
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~-----~~~~~~~g~~i~~~~~~~~~~~~~~~-~~l~~~~r~~~~   76 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF-----PQRSTVTGKMIDDYLTRKKTYNDHIV-NLLFCANRWEFA   76 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES-----SCTTSHHHHHHHHHHTSSCCCCHHHH-HHHHHHHHHTTH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec-----CCCCCcHHHHHHHHHhcCCCCCHHHH-HHHHHHHHHHHH
Confidence            57899999999999999999999999 688887532     11246788889999877655544322 221         


Q ss_pred             ---HHHHHhcccCCcceEEEeCCCCCHH--H------HHHH---Hh-hCCCceEEEEccCHHHHHHHHhcCCcCCCcccc
Q 024067          132 ---SKRLEEGYYRGESGFILDGIPRTRI--Q------AEIL---DQ-IVDVDLVINFKSIEDQLVKRNLESEAFSPHKEF  196 (273)
Q Consensus       132 ---~~~l~~~~~~~~~g~IlDg~P~~~~--q------a~~l---~~-~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~  196 (273)
                         ...+.     .+..+|+|+||.+..  |      .+.+   .. ...||++|+|++|++++.+   +|..+.     
T Consensus        77 ~~i~~~l~-----~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~---~R~~d~-----  143 (204)
T 2v54_A           77 SFIQEQLE-----QGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINR---NVGEEI-----  143 (204)
T ss_dssp             HHHHHHHH-----TTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHHTT---CCSSST-----
T ss_pred             HHHHHHHH-----CCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHh---hcCccc-----
Confidence               12222     246789999886421  1      1222   21 1368999999999999877   343111     


Q ss_pred             cccCCCCCCCCCcHHHHHHHHHH-HHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067          197 LRLGGARFSAADAASAWKEKFRI-YAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ  260 (273)
Q Consensus       197 y~~~~~~~~~~d~~e~~~~rl~~-y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~  260 (273)
                               .+ . +.+.+|+.. |.+..    ..|  ...++.||+++++++++++|.+.+...
T Consensus       144 ---------~e-~-~~~~~rl~~~y~~~~----~~~--~~~~~~Id~~~~~~~v~~~i~~~l~~~  191 (204)
T 2v54_A          144 ---------YE-D-VTFQQKVLQEYKKMI----EEG--DIHWQIISSEFEEDVKKELIKNIVIEA  191 (204)
T ss_dssp             ---------TC-C-SHHHHHHHHHHHHHH----TTC--SSCEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred             ---------cc-H-HHHHHHHHHHHHHHH----HhC--CCcEEEEECCCCHHHHHHHHHHHHHHH
Confidence                     01 1 144555543 44321    111  235789999999999999999988754

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=99.68  E-value=4.8e-15  Score=126.24  Aligned_cols=171  Identities=12%  Similarity=0.115  Sum_probs=109.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCee-chhHHHHHHccCCChHHHHHHHHHHCC-----CCCCHHHH--------
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHI-SMGSLVRQELSPRSALYKQIANAVNEG-----KLVPEDVI--------  127 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~i-s~~dllr~~~~~~~~~g~~i~~~l~~g-----~~~~~~~~--------  127 (273)
                      +++.|+|.|++||||||+++.|++.+.-..+ ++ .+.  ..+.++++|+.|++++..+     ..+.....        
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v-~~~--rep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R   78 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDM-VFT--REPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAAR   78 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCE-EEE--ESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcc-eee--eCCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHH
Confidence            4789999999999999999999999843333 11 112  2356789999999999732     23333221        


Q ss_pred             ----HHHHHHHHHhcccCCcceEEEeCCCC------------CHHHHHHHHhh----CCCceEEEEccCHHHHHHHHhcC
Q 024067          128 ----FALLSKRLEEGYYRGESGFILDGIPR------------TRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLES  187 (273)
Q Consensus       128 ----~~ll~~~l~~~~~~~~~g~IlDg~P~------------~~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R  187 (273)
                          ...+...+..     +..+|.|.|..            .......++.+    ..||++|+|++|++++++|+.+|
T Consensus        79 ~~~~~~~i~paL~~-----g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R  153 (213)
T 4tmk_A           79 VQLVETVIKPALAN-----GTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARAR  153 (213)
T ss_dssp             HHHHHHTHHHHHHT-----TCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHC-----CCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhc
Confidence                1233344443     45678885422            12233333322    47999999999999999999887


Q ss_pred             CcCCCcccccccCCCCCCCC-CcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067          188 EAFSPHKEFLRLGGARFSAA-DAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ  260 (273)
Q Consensus       188 ~~~~~~~~~y~~~~~~~~~~-d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~  260 (273)
                      ....             +.+ .+.+.+++-.+.|.+..    +   ..+.++.||+++++++|.++|.+.|...
T Consensus       154 ~~~d-------------r~E~~~~~f~~rv~~~y~~la----~---~~~~~~vIDa~~s~eeV~~~I~~~l~~~  207 (213)
T 4tmk_A          154 GELD-------------RIEQESFDFFNRTRARYLELA----A---QDKSIHTIDATQPLEAVMDAIRTTVTHW  207 (213)
T ss_dssp             SSCC-------------TTTTSCHHHHHHHHHHHHHHH----H---TCTTEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             CCcc-------------chhhhHHHHHHHHHHHHHHHH----H---HCCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence            5210             112 12333333333454322    1   2256899999999999999999998764

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=99.68  E-value=9.7e-17  Score=132.58  Aligned_cols=170  Identities=16%  Similarity=0.154  Sum_probs=96.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC-----CCeechhHHHHHHccCCChHHHHHHHHHHCCCCCC--HHHHHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP--EDVIFALLSKRL  135 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g-----~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~--~~~~~~ll~~~l  135 (273)
                      ++.|+|+|+|||||||+++.|+++++     ++++++++++++........ ....++   +...+  ...+...+.+.+
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~i   78 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLV-SDRDQM---RKMDPETQKRIQKMAGRKI   78 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSC-SSGGGG---SSCCHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCC-CCHHHH---hcCCHHHHHHHHHHHHHHH
Confidence            57899999999999999999999998     99999999988643211000 000000   01111  112222232333


Q ss_pred             HhcccCCcceEEEeCCCCCHHHH--------HHHHhhCCCceEEEEccCHHHHHH-HHhc--CCcCCCcccccccCCCCC
Q 024067          136 EEGYYRGESGFILDGIPRTRIQA--------EILDQIVDVDLVINFKSIEDQLVK-RNLE--SEAFSPHKEFLRLGGARF  204 (273)
Q Consensus       136 ~~~~~~~~~g~IlDg~P~~~~qa--------~~l~~~~~~d~vI~L~~~~e~l~~-Rl~~--R~~~~~~~~~y~~~~~~~  204 (273)
                      ...  ....++|+||++....+.        ..+.. ..||++|+|++|++++++ |+..  |...              
T Consensus        79 ~~~--~~~~~viid~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~l~~~~~~~~~rRl~~~~R~r~--------------  141 (192)
T 1kht_A           79 AEM--AKESPVAVDTHSTVSTPKGYLPGLPSWVLNE-LNPDLIIVVETTGDEILMRRMSDETRVRD--------------  141 (192)
T ss_dssp             HHH--HTTSCEEEECCSEEEETTEEEESSCHHHHHH-HCCSEEEEEECCHHHHHHHHHTSSSCSSS--------------
T ss_pred             Hhh--ccCCeEEEccceeccccccccccCcHHHHhc-cCCCEEEEEeCCHHHHHHHHhhhcccCCC--------------
Confidence            221  124579999976421111        22222 257899999999999996 8876  5421              


Q ss_pred             CCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEE-eCCCChhHHHHHHHHHH
Q 024067          205 SAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNF-QVAAAPGETWQGLLSAL  257 (273)
Q Consensus       205 ~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~i-d~~~s~~ev~~~I~~~l  257 (273)
                        ....+.+..+...++. .......|.. ..++.+ |.++++++++++|.+.+
T Consensus       142 --~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~i~~~~~~~e~~~~~i~~~i  191 (192)
T 1kht_A          142 --LDTASTIEQHQFMNRC-AAMSYGVLTG-ATVKIVQNRNGLLDQAVEELTNVL  191 (192)
T ss_dssp             --CCCHHHHHHHHHHHHH-HHHHHHHHHC-CEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             --cCCHHHHHHHHHHHHH-HHHHHHHhcC-CcEEEEeCCCCCHHHHHHHHHHHh
Confidence              1223333333222222 2222233433 234555 44456999999998876

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=99.68  E-value=1.1e-15  Score=132.08  Aligned_cols=173  Identities=14%  Similarity=0.073  Sum_probs=107.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCC---CCCCHHHHH----------
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEG---KLVPEDVIF----------  128 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g---~~~~~~~~~----------  128 (273)
                      +++.|+|.|++||||||+++.|++.++...+++..+++  .+.++++|+.+++++..+   ..+...+..          
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~r--ep~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~~  103 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTR--EPGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQL  103 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEE--SSCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeec--CCCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999655554222333  246789999999998632   223332221          


Q ss_pred             --HHHHHHHHhcccCCcceEEEeCC----------CCC--HHHHHHHHh----hCCCceEEEEccCHHHHHHHHhcCCcC
Q 024067          129 --ALLSKRLEEGYYRGESGFILDGI----------PRT--RIQAEILDQ----IVDVDLVINFKSIEDQLVKRNLESEAF  190 (273)
Q Consensus       129 --~ll~~~l~~~~~~~~~g~IlDg~----------P~~--~~qa~~l~~----~~~~d~vI~L~~~~e~l~~Rl~~R~~~  190 (273)
                        +.+...+..     +..+|.|.|          ++.  ......+..    ...||++|+|++|++++++|+.+|...
T Consensus       104 ~~~~I~paL~~-----g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~~  178 (236)
T 3lv8_A          104 VENVIKPALAR-----GEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGEL  178 (236)
T ss_dssp             HHHTHHHHHHT-----TCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----CC
T ss_pred             HHHHHHHHHHc-----CCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCc
Confidence              222333332     466788854          222  222223332    247999999999999999999888521


Q ss_pred             CCcccccccCCCCCCCCCcHHHHHHHH-HHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcC
Q 024067          191 SPHKEFLRLGGARFSAADAASAWKEKF-RIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQH  261 (273)
Q Consensus       191 ~~~~~~y~~~~~~~~~~d~~e~~~~rl-~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~  261 (273)
                      .             +.+.....+.+++ +.|.+.       +++...++.||+++++++|.++|.+.|....
T Consensus       179 d-------------r~E~~~~~~~~rv~~~y~~l-------a~~~~~~~vIDa~~sieeV~~~I~~~l~~~l  230 (236)
T 3lv8_A          179 D-------------RIEKMDISFFERARERYLEL-------ANSDDSVVMIDAAQSIEQVTADIRRALQDWL  230 (236)
T ss_dssp             C-------------TTTTSCHHHHHHHHHHHHHH-------HHHCTTEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred             c-------------hhhhhHHHHHHHHHHHHHHH-------HHHCCCEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence            1             1111112344444 344332       2222238999999999999999999987654

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=99.68  E-value=2.3e-16  Score=130.23  Aligned_cols=162  Identities=20%  Similarity=0.245  Sum_probs=97.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHhcccCC
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAV-NEGKLVPEDVIFALLSKRLEEGYYRG  142 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l-~~g~~~~~~~~~~ll~~~l~~~~~~~  142 (273)
                      ++|+|+|+|||||||+|+.|++++|+++|++|+++++... . +    +.+++ ..|.....+....++...+..     
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g-~-~----~~~~~~~~g~~~~~~~~~~~~~~~~~~-----   71 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTG-R-S----IADIFATDGEQEFRRIEEDVVRAALAD-----   71 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHS-S-C----HHHHHHHHCHHHHHHHHHHHHHHHHHH-----
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcC-C-C----HHHHHHHhChHHHHHHHHHHHHHHHhc-----
Confidence            5699999999999999999999999999999998886532 1 1    22222 233322333333444433322     


Q ss_pred             cceEEE-eCC--CCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHH
Q 024067          143 ESGFIL-DGI--PRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRI  219 (273)
Q Consensus       143 ~~g~Il-Dg~--P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~  219 (273)
                       ..+|+ +|.  .........|.    .+.+|+|+||.+++.+|+..|...+.           ...++..    +++..
T Consensus        72 -~~~vi~~g~~~v~~~~~~~~l~----~~~vV~L~~~~e~~~~Rl~~r~~r~~-----------~~~~~~~----~~i~~  131 (184)
T 2iyv_A           72 -HDGVLSLGGGAVTSPGVRAALA----GHTVVYLEISAAEGVRRTGGNTVRPL-----------LAGPDRA----EKYRA  131 (184)
T ss_dssp             -CCSEEECCTTGGGSHHHHHHHT----TSCEEEEECCHHHHHHHTTCCCCCSS-----------TTSCCHH----HHHHH
T ss_pred             -CCeEEecCCcEEcCHHHHHHHc----CCeEEEEeCCHHHHHHHHhCCCCCCC-----------ccCCCHH----HHHHH
Confidence             23333 332  22222223332    56899999999999999988752110           0111222    23333


Q ss_pred             HHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHHHHhc
Q 024067          220 YAEQGKSLEDYYSKQRKLLNFQVA-AAPGETWQGLLSALHLQ  260 (273)
Q Consensus       220 y~~~~~~l~~~y~~~~~~~~id~~-~s~~ev~~~I~~~l~~~  260 (273)
                      +...   ...+|.... .+.||++ .++++++++|.+.+...
T Consensus       132 ~~~~---r~~~~~~~~-~~~Idt~~~s~ee~~~~I~~~l~~~  169 (184)
T 2iyv_A          132 LMAK---RAPLYRRVA-TMRVDTNRRNPGAVVRHILSRLQVP  169 (184)
T ss_dssp             HHHH---HHHHHHHHC-SEEEECSSSCHHHHHHHHHTTSCCC
T ss_pred             HHHH---HHHHHhccC-CEEEECCCCCHHHHHHHHHHHHhhc
Confidence            3221   223554432 3678988 79999999998887543

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=99.67  E-value=4.5e-16  Score=126.83  Aligned_cols=162  Identities=12%  Similarity=0.108  Sum_probs=98.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhcccC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYR  141 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~-~g~~~~~~~~~~ll~~~l~~~~~~  141 (273)
                      ++.|+|+|+|||||||+++.|++++|++++++|+++++..  +....    +++. .|.....++...++. .+.     
T Consensus         2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~~--g~~~~----~~~~~~~~~~~~~~~~~~~~-~l~-----   69 (173)
T 1e6c_A            2 TEPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTS--GMTVA----DVVAAEGWPGFRRRESEALQ-AVA-----   69 (173)
T ss_dssp             CCCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH--CSCHH----HHHHHHHHHHHHHHHHHHHH-HHC-----
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHHh--CCCHH----HHHHHcCHHHHHHHHHHHHH-Hhh-----
Confidence            4579999999999999999999999999999999887642  12222    1221 111111111112221 121     


Q ss_pred             CcceEEEe-C--CCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHh--cCCcCCCcccccccCCCCCCCCCcHHHHHHH
Q 024067          142 GESGFILD-G--IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNL--ESEAFSPHKEFLRLGGARFSAADAASAWKEK  216 (273)
Q Consensus       142 ~~~g~IlD-g--~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~--~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~r  216 (273)
                       ..++|++ |  .+........|.   .++++|+|++|++++.+|+.  .|..+.              +....+...++
T Consensus        70 -~~~~vi~~g~~~~~~~~~~~~l~---~~~~~i~l~~~~e~~~~R~~~~~r~~~r--------------~~~~~~~~~~~  131 (173)
T 1e6c_A           70 -TPNRVVATGGGMVLLEQNRQFMR---AHGTVVYLFAPAEELALRLQASLQAHQR--------------PTLTGRPIAEE  131 (173)
T ss_dssp             -CSSEEEECCTTGGGSHHHHHHHH---HHSEEEEEECCHHHHHHHHHHHHCSCCC--------------CCTTHHHHHHH
T ss_pred             -cCCeEEECCCcEEeCHHHHHHHH---cCCeEEEEECCHHHHHHHHhhccCCCCC--------------CcCCCCCHHHH
Confidence             2456665 4  233333344443   26799999999999999998  773111              11112233445


Q ss_pred             HHHHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHHHHh
Q 024067          217 FRIYAEQGKSLEDYYSKQRKLLNFQVA-AAPGETWQGLLSALHL  259 (273)
Q Consensus       217 l~~y~~~~~~l~~~y~~~~~~~~id~~-~s~~ev~~~I~~~l~~  259 (273)
                      +..+....   ..+|...  .+.||++ .+++++.++|...+..
T Consensus       132 ~~~~~~~~---~~~~~~~--~~~Id~~~~~~~~~~~~i~~~l~~  170 (173)
T 1e6c_A          132 MEAVLRER---EALYQDV--AHYVVDATQPPAAIVCELMQTMRL  170 (173)
T ss_dssp             HHHHHHHH---HHHHHHH--CSEEEETTSCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHH---HHHHHhC--cEEEECCCCCHHHHHHHHHHHhcc
Confidence            55443332   2345543  3567887 7999999999988753

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=99.66  E-value=2.5e-16  Score=128.21  Aligned_cols=156  Identities=15%  Similarity=0.122  Sum_probs=93.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhcccC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYR  141 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~-~g~~~~~~~~~~ll~~~l~~~~~~  141 (273)
                      +..|+|+|+|||||||+++.|++++|++++++|+++++..      |..+.+++. .|.....+....++...+.     
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~------g~~~~~~~~~~g~~~~~~~~~~~l~~~~~-----   75 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERV------GLSVREIFEELGEDNFRMFEKNLIDELKT-----   75 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH------TSCHHHHHHHTCHHHHHHHHHHHHHHHHT-----
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHh------CCCHHHHHHHhCHHHHHHHHHHHHHHHHh-----
Confidence            4578999999999999999999999999999999988653      122334443 2432222333333433222     


Q ss_pred             CcceE-EEe-C--CCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHH
Q 024067          142 GESGF-ILD-G--IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKF  217 (273)
Q Consensus       142 ~~~g~-IlD-g--~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl  217 (273)
                       ...+ |+. |  ++.. ..      +..++.+|+|++|++++++|+..|....          .+ ...+ .+.+++.+
T Consensus        76 -~~~~~Vi~~g~g~~~~-~~------l~~~~~vi~l~~~~e~~~~Rl~~r~~~~----------r~-~~~~-~~~~~~~~  135 (168)
T 1zuh_A           76 -LKTPHVISTGGGIVMH-EN------LKGLGTTFYLKMDFETLIKRLNQKEREK----------RP-LLNN-LTQAKELF  135 (168)
T ss_dssp             -CSSCCEEECCGGGGGC-GG------GTTSEEEEEEECCHHHHHHHHCC-------------------CCT-THHHHHHH
T ss_pred             -cCCCEEEECCCCEech-hH------HhcCCEEEEEECCHHHHHHHHhccCCCC----------CC-CccC-HHHHHHHH
Confidence             1234 554 2  3333 21      2357899999999999999998873100          00 0011 22333333


Q ss_pred             HHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHH
Q 024067          218 RIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL  257 (273)
Q Consensus       218 ~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l  257 (273)
                      ..       ...+|.+.. .+.||+++++++++++|...|
T Consensus       136 ~~-------r~~~~~~~a-~~~Id~~~~~e~~~~~I~~~l  167 (168)
T 1zuh_A          136 EK-------RQALYEKNA-SFIIDARGGLNNSLKQVLQFI  167 (168)
T ss_dssp             HH-------HHHHHHHTC-SEEEEGGGCHHHHHHHHHHC-
T ss_pred             HH-------HHHHHHHHC-CEEEECCCCHHHHHHHHHHHh
Confidence            21       123455422 356788789999999998765

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=99.66  E-value=1.5e-15  Score=125.34  Aligned_cols=166  Identities=14%  Similarity=0.088  Sum_probs=96.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHhcccC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE-GKLVPEDVIFALLSKRLEEGYYR  141 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~-g~~~~~~~~~~ll~~~l~~~~~~  141 (273)
                      +..|+|+|+|||||||+++.|++++|++++++|+++++... . +.    .+++.. |.....+....++......    
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g-~-~~----~~~~~~~g~~~~~~~~~~~~~~~~~~----   74 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTG-A-DI----AWIFEMEGEAGFRRREREMIEALCKL----   74 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHT-S-CH----HHHHHHHHHHHHHHHHHHHHHHHHHS----
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcC-C-Ch----hhHHHHhCHHHHHHHHHHHHHHHHhc----
Confidence            56899999999999999999999999999999998876432 1 12    222211 1111122333333332221    


Q ss_pred             CcceEEEeC--CCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHH--hcCCcCCCcccccccCCCCCCCCCcHHHHHHHH
Q 024067          142 GESGFILDG--IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRN--LESEAFSPHKEFLRLGGARFSAADAASAWKEKF  217 (273)
Q Consensus       142 ~~~g~IlDg--~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl--~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl  217 (273)
                       ...+|..|  .+........|..   .+++|+|++|.+++.+|+  ..+...+               ....+...+++
T Consensus        75 -~~~vi~~gg~~~~~~~~~~~l~~---~~~vi~L~~~~e~l~~Rl~~~~~~~rp---------------~~~~~~~~~~l  135 (185)
T 3trf_A           75 -DNIILATGGGVVLDEKNRQQISE---TGVVIYLTASIDTQLKRIGQKGEMRRP---------------LFIKNNSKEKL  135 (185)
T ss_dssp             -SSCEEECCTTGGGSHHHHHHHHH---HEEEEEEECCHHHHHHHHHCCTTCSSC---------------CCCCHHHHHHH
T ss_pred             -CCcEEecCCceecCHHHHHHHHh---CCcEEEEECCHHHHHHHHhhcCCCCCC---------------CCCCCCHHHHH
Confidence             23344444  4444444555543   248999999999999999  4433211               11111122233


Q ss_pred             HHHHHhhHHHHHHHHhcCcEEEEeCCC-ChhHHHHHHHHHHHhcC
Q 024067          218 RIYAEQGKSLEDYYSKQRKLLNFQVAA-APGETWQGLLSALHLQH  261 (273)
Q Consensus       218 ~~y~~~~~~l~~~y~~~~~~~~id~~~-s~~ev~~~I~~~l~~~~  261 (273)
                      ......   ...+|++.. -+.||++. +++++.++|.+.+....
T Consensus       136 ~~~~~~---r~~~y~~~a-d~~Idt~~~~~~e~~~~I~~~l~~~~  176 (185)
T 3trf_A          136 QQLNEI---RKPLYQAMA-DLVYPTDDLNPRQLATQILVDIKQTY  176 (185)
T ss_dssp             HHHHHH---HHHHHHHHC-SEEEECTTCCHHHHHHHHHHHSCC--
T ss_pred             HHHHHH---HHHHHhhcC-CEEEECCCCCHHHHHHHHHHHHHHHh
Confidence            222222   223454422 25678776 89999999999887653

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=99.66  E-value=3.7e-15  Score=120.97  Aligned_cols=151  Identities=17%  Similarity=0.148  Sum_probs=96.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~  143 (273)
                      +.|+|+|+|||||||+++.|++++|+++++.|.+......    .    ..++            ... ..+..     +
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~----~----~~~~------------~~~-~~l~~-----~   55 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKSG----N----EKLF------------EHF-NKLAD-----E   55 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTTC----H----HHHH------------HHH-HHHTT-----C
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchhH----H----HHHH------------HHH-HHHHh-----C
Confidence            5789999999999999999999999999999877754320    0    1111            000 11111     2


Q ss_pred             ceEEEeCC---------------CCCHHHHHHHHhh-CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCC
Q 024067          144 SGFILDGI---------------PRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAA  207 (273)
Q Consensus       144 ~g~IlDg~---------------P~~~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~  207 (273)
                      ..+|.|.+               .....+...+... ..|+++|+|+++++++.+|+..|...                .
T Consensus        56 ~~vi~dr~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~r~----------------~  119 (173)
T 3kb2_A           56 DNVIIDRFVYSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGDE----------------Y  119 (173)
T ss_dssp             CSEEEESCHHHHHHHTTTBTTCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHSCS----------------C
T ss_pred             CCeEEeeeecchHHHHHHHHHhhHhhHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCc----------------c
Confidence            33444421               1223344444432 46899999999999999999887421                1


Q ss_pred             CcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCC-ChhHHHHHHHHHHHhcCC
Q 024067          208 DAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAA-APGETWQGLLSALHLQHM  262 (273)
Q Consensus       208 d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~-s~~ev~~~I~~~l~~~~~  262 (273)
                      ...+.+++..+.|.+    ....|.  ...+.||+++ ++++++++|...+...+.
T Consensus       120 ~~~~~~~~~~~~~~~----~~~~~~--~~~~~id~~~~~~~ev~~~I~~~~~~~~~  169 (173)
T 3kb2_A          120 IEGKDIDSILELYRE----VMSNAG--LHTYSWDTGQWSSDEIAKDIIFLVELEHH  169 (173)
T ss_dssp             CCHHHHHHHHHHHHH----HHHTCS--SCEEEEETTTSCHHHHHHHHHHHHHHGGG
T ss_pred             hhhhHHHHHHHHHHH----HHhhcC--CCEEEEECCCCCHHHHHHHHHHHHhCCCc
Confidence            112333333344432    333343  2478899984 999999999999987643

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=99.66  E-value=4.9e-15  Score=124.45  Aligned_cols=164  Identities=15%  Similarity=0.136  Sum_probs=101.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCC-----CCH-------------
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL-----VPE-------------  124 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~-----~~~-------------  124 (273)
                      ++.|.|+|++||||||+++.|++ +|++++++|++.++...++......+.+.+.....     +..             
T Consensus         2 ~~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~   80 (206)
T 1jjv_A            2 TYIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDED   80 (206)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHH
Confidence            35789999999999999999998 99999999999887655554444444443322111     110             


Q ss_pred             -----HHHHHHHH----HHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCccc
Q 024067          125 -----DVIFALLS----KRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKE  195 (273)
Q Consensus       125 -----~~~~~ll~----~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~  195 (273)
                           .+....+.    +.+...   ...++|+|+ |...+..  +.  ..+|.+|+|++|++++.+|+..|..      
T Consensus        81 ~~~l~~~~~p~v~~~~~~~~~~~---~~~~vv~~~-~~l~e~~--~~--~~~d~vi~l~~~~e~~~~Rl~~R~~------  146 (206)
T 1jjv_A           81 KLWLNNLLHPAIRERMKQKLAEQ---TAPYTLFVV-PLLIENK--LT--ALCDRILVVDVSPQTQLARSAQRDN------  146 (206)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTC---CSSEEEEEC-TTTTTTT--CG--GGCSEEEEEECCHHHHHHHHC----------
T ss_pred             HHHHHhccCHHHHHHHHHHHHhc---CCCEEEEEe-chhhhcC--cH--hhCCEEEEEECCHHHHHHHHHHcCC------
Confidence                 01111111    112211   235788887 4322211  11  2468999999999999999988742      


Q ss_pred             ccccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChh----HHHHHHHHHHHh
Q 024067          196 FLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPG----ETWQGLLSALHL  259 (273)
Q Consensus       196 ~y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~----ev~~~I~~~l~~  259 (273)
                                  .+.+.+.+++..   + .+..++|...+  +.||++++++    ++.++|...+..
T Consensus       147 ------------~~~e~~~~r~~~---q-~~~~~~~~~ad--~vIdn~~~~~~~~~~~~~~i~~~~~~  196 (206)
T 1jjv_A          147 ------------NNFEQIQRIMNS---Q-VSQQERLKWAD--DVINNDAELAQNLPHLQQKVLELHQF  196 (206)
T ss_dssp             -------------CHHHHHHHHHH---S-CCHHHHHHHCS--EEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred             ------------CCHHHHHHHHHh---c-CChHHHHHhCC--EEEECCCCccccHHHHHHHHHHHHHH
Confidence                        124456666553   1 23455566555  5688888999    999999888753

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=99.65  E-value=1.5e-15  Score=127.93  Aligned_cols=170  Identities=15%  Similarity=0.101  Sum_probs=104.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHH-----------
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFA-----------  129 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~-----------  129 (273)
                      .+++.|+|+|+|||||||+++.|+++++..+++++. +++ ...+++.++.+++++..+..+++.....           
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~-~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~   84 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAEL-LRF-PERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVP   84 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE-EES-SCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEE-eeC-CCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            457899999999999999999999999877766632 221 1124678888999887766666543321           


Q ss_pred             HHHHHHHhcccCCcceEEEeCCC-----CCHH----HHHHHHh----hCCCceEEEEccCHHHHHHHHhcCCcCCCcccc
Q 024067          130 LLSKRLEEGYYRGESGFILDGIP-----RTRI----QAEILDQ----IVDVDLVINFKSIEDQLVKRNLESEAFSPHKEF  196 (273)
Q Consensus       130 ll~~~l~~~~~~~~~g~IlDg~P-----~~~~----qa~~l~~----~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~  196 (273)
                      .+...+.     .+..+|+|.+.     ....    ..+.+..    ...||++|+|++|++++.+|+..| .+.     
T Consensus        85 ~i~~~l~-----~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~-~~~-----  153 (215)
T 1nn5_A           85 LIKEKLS-----QGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFG-HER-----  153 (215)
T ss_dssp             HHHHHHH-----TTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC------CT-----
T ss_pred             HHHHHHH-----CCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccC-ccc-----
Confidence            1222222     24678899532     1110    1222221    135899999999999999998633 111     


Q ss_pred             cccCCCCCCCCCcHHHHHHHHH-HHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067          197 LRLGGARFSAADAASAWKEKFR-IYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ  260 (273)
Q Consensus       197 y~~~~~~~~~~d~~e~~~~rl~-~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~  260 (273)
                               .+. . .+.+++. .|.+...    .+  ...++.||+++++++++++|...+...
T Consensus       154 ---------~~~-~-~~~~~~~~~~~~~~~----~~--~~~~~~Id~~~~~e~~~~~i~~~l~~~  201 (215)
T 1nn5_A          154 ---------YEN-G-AFQERALRCFHQLMK----DT--TLNWKMVDASKSIEAVHEDIRVLSEDA  201 (215)
T ss_dssp             ---------TCS-H-HHHHHHHHHHHHHTT----CT--TSCEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             ---------cch-H-HHHHHHHHHHHHHHH----hC--CCCEEEEECCCCHHHHHHHHHHHHHHH
Confidence                     111 1 2333332 2322110    01  135788999999999999999888654

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=99.65  E-value=4.1e-15  Score=124.69  Aligned_cols=177  Identities=14%  Similarity=0.073  Sum_probs=98.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCC--eechhHHHHHHccCCChHHHHHHHHHHCCCC---CCHHHHH--------
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP--HISMGSLVRQELSPRSALYKQIANAVNEGKL---VPEDVIF--------  128 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~--~is~~dllr~~~~~~~~~g~~i~~~l~~g~~---~~~~~~~--------  128 (273)
                      +++.|+|+|+|||||||+++.|+++++..  ++.++          .+.++.+++++..+..   .......        
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~----------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~   72 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTE----------WNSSDWIHDIIKEAKKKDLLTPLTFSLIHATDFS   72 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEE----------TTCCCHHHHHHHHHTTTSCCCHHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEec----------CCcHHHHHHHHhccccccCCCHHHHHHHHHHHHH
Confidence            36789999999999999999999999874  33321          0122344444433321   2221110        


Q ss_pred             HHHHHHHHhcccCCcceEEEeCCCCCHH--H---------HHHHHh-hCCCceEEEEccCHHHHHHHHh-cCCcCCCccc
Q 024067          129 ALLSKRLEEGYYRGESGFILDGIPRTRI--Q---------AEILDQ-IVDVDLVINFKSIEDQLVKRNL-ESEAFSPHKE  195 (273)
Q Consensus       129 ~ll~~~l~~~~~~~~~g~IlDg~P~~~~--q---------a~~l~~-~~~~d~vI~L~~~~e~l~~Rl~-~R~~~~~~~~  195 (273)
                      ..+...+... ...+..+|+|++|.+..  |         ...+.. ...||++|+|++|++++.+|+. .|...   ++
T Consensus        73 ~~~~~~i~~~-l~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~~~---~~  148 (213)
T 2plr_A           73 DRYERYILPM-LKSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKRKI---KP  148 (213)
T ss_dssp             HHHHHTHHHH-HHTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTCCC---CT
T ss_pred             HHHHHHHHHH-HhCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcccccc---cc
Confidence            0111111110 11246789999987531  2         222322 2358999999999999999998 66521   11


Q ss_pred             ccccCCCCCCCCC---cHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067          196 FLRLGGARFSAAD---AASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ  260 (273)
Q Consensus       196 ~y~~~~~~~~~~d---~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~  260 (273)
                       +..........|   ..+.+.+++..+...   ..+.    ..++.||+++++++++++|.+.+...
T Consensus       149 -~~~g~~~~~~~d~~e~~~~~~~r~~~~~~~---~~~~----~~~~~Id~~~~~e~v~~~I~~~l~~~  208 (213)
T 2plr_A          149 -QEAGADIFPGLSPEEGFLKYQGLITEVYDK---LVKD----ENFIVIDGTKTPKEIQIQIRKFVGEL  208 (213)
T ss_dssp             -TTTTTTTCTTSCHHHHHHHHHHHHHHHHHH---HTTT----TTCEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             -cccccccccccchhhhHHHHHHHHHHHHHH---HHhh----CCEEEEECCCCHHHHHHHHHHHHHHH
Confidence             100000001111   112344444332211   1111    15789999999999999999998754

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=99.65  E-value=2.7e-15  Score=127.26  Aligned_cols=168  Identities=15%  Similarity=0.125  Sum_probs=103.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCC-----CCCCHHHHH--------
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEG-----KLVPEDVIF--------  128 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g-----~~~~~~~~~--------  128 (273)
                      +++.|+|+|++||||||+++.|++ +|++++++|+++++...++......+.+.+...     ..+....+.        
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~   81 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPE   81 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHH
Confidence            467899999999999999999998 999999999999876655554445555544211     112222111        


Q ss_pred             ------HHHHHHHH----h-cccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCccccc
Q 024067          129 ------ALLSKRLE----E-GYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFL  197 (273)
Q Consensus       129 ------~ll~~~l~----~-~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y  197 (273)
                            .++...+.    . ..... .++++.+.|......  +.  ..+|.+|+|++|++++.+|+..|..        
T Consensus        82 ~~~~l~~~~~p~v~~~~~~~~~~~~-~~~vi~~~~~l~~~~--~~--~~~d~vi~l~~~~e~~~~Rl~~R~~--------  148 (218)
T 1vht_A           82 EKNWLNALLHPLIQQETQHQIQQAT-SPYVLWVVPLLVENS--LY--KKANRVLVVDVSPETQLKRTMQRDD--------  148 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCC-SSEEEEECTTTTTTT--GG--GGCSEEEEEECCHHHHHHHHHHHHT--------
T ss_pred             HHHHHHHhHCHHHHHHHHHHHHhcC-CCEEEEEeeeeeccC--cc--ccCCEEEEEECCHHHHHHHHHHcCC--------
Confidence                  11111111    0 00001 234444445433321  21  2578999999999999999987641        


Q ss_pred             ccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067          198 RLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL  259 (273)
Q Consensus       198 ~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~  259 (273)
                                .+.+.+.+++...    .+..+++...+  +.||++++++++.++|...+..
T Consensus       149 ----------~~~~~~~~~~~~~----~~~~~~~~~ad--~vId~~~~~~~~~~~I~~~l~~  194 (218)
T 1vht_A          149 ----------VTREHVEQILAAQ----ATREARLAVAD--DVIDNNGAPDAIASDVARLHAH  194 (218)
T ss_dssp             ----------CCHHHHHHHHHHS----CCHHHHHHHCS--EEEECSSCTTSHHHHHHHHHHH
T ss_pred             ----------CCHHHHHHHHHhc----CChHHHHHhCC--EEEECCCCHHHHHHHHHHHHHH
Confidence                      1233455555431    12233334344  5688888999999999888764

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=99.64  E-value=2e-15  Score=125.06  Aligned_cols=112  Identities=14%  Similarity=0.307  Sum_probs=74.4

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHH-hCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCC---CHHHHHHHHHHHH
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSKL-LEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLV---PEDVIFALLSKRL  135 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~-~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~---~~~~~~~ll~~~l  135 (273)
                      +.+++.|+|+|+|||||||+++.|++. +|++++++|+++++... ...+++.    +... .+   +++.....+...+
T Consensus         7 ~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~~~-~~~~~~~----~~~~-~~~r~~~~~~~~~l~~~~   80 (184)
T 1y63_A            7 QPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHF-YTEYDTE----LDTH-IIEEKDEDRLLDFMEPIM   80 (184)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTC-SCC----------CC-CCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHhhh-hhhHHHH----hhhc-ccCCCCHHHHHHHHHHHH
Confidence            346789999999999999999999999 79999999999987421 1122221    1111 12   2333344444433


Q ss_pred             HhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCC
Q 024067          136 EEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE  188 (273)
Q Consensus       136 ~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~  188 (273)
                      ..     ..++|+|+....     .+.. ..++.+|+|++|.+++.+|+.+|.
T Consensus        81 ~~-----~g~~vi~~~~~~-----~~~~-~~~~~vi~l~~~~e~~~~Rl~~R~  122 (184)
T 1y63_A           81 VS-----RGNHVVDYHSSE-----LFPE-RWFHMVVVLHTSTEVLFERLTKRQ  122 (184)
T ss_dssp             TS-----SSEEEEECSCCT-----TSCG-GGCSEEEEEECCHHHHHHHHHHTT
T ss_pred             hc-----cCCEEEeCchHh-----hhhh-ccCCEEEEEECCHHHHHHHHHhCC
Confidence            21     357888875332     1111 136799999999999999999885

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=99.64  E-value=3e-14  Score=119.78  Aligned_cols=163  Identities=14%  Similarity=0.143  Sum_probs=104.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh---CCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHH----------HH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIF----------AL  130 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~---g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~----------~l  130 (273)
                      +.|+|.|+.||||||+++.|++.+   |..++-+      ..+.+++.++.+++++.++...+.....          ..
T Consensus         1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t------reP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~   74 (197)
T 3hjn_A            1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK------REPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE   74 (197)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE------ESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE------ECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999988   5555543      2356788999999988766554432211          12


Q ss_pred             HHHHHHhcccCCcceEEEeCCCCC------------HHHHHHHHhh----CCCceEEEEccCHHHHHHHHhcCCcCCCcc
Q 024067          131 LSKRLEEGYYRGESGFILDGIPRT------------RIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFSPHK  194 (273)
Q Consensus       131 l~~~l~~~~~~~~~g~IlDg~P~~------------~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~  194 (273)
                      +...+.     .+..+|.|.|..+            ......|...    ..||++|+|++|+++..+|...+..     
T Consensus        75 I~~~L~-----~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~dr-----  144 (197)
T 3hjn_A           75 IKQYLS-----EGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNR-----  144 (197)
T ss_dssp             HHHHHT-----TTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CT-----
T ss_pred             HHHHHH-----CCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcCc-----
Confidence            222232     2456777865322            1122222221    4699999999999999999654421     


Q ss_pred             cccccCCCCCCCCCcHHHHHHHH-HHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcC
Q 024067          195 EFLRLGGARFSAADAASAWKEKF-RIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQH  261 (273)
Q Consensus       195 ~~y~~~~~~~~~~d~~e~~~~rl-~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~  261 (273)
                                 .+ +. .+.+++ +.|.+.    ..  .....++.||+++++++|.++|.+.+..+.
T Consensus       145 -----------~e-~~-ef~~rv~~~y~~l----a~--~~~~~~~~IDa~~~~eeV~~~I~~~i~~rl  193 (197)
T 3hjn_A          145 -----------FE-KR-EFLERVREGYLVL----AR--EHPERIVVLDGKRSIEEIHRDVVREVKRRW  193 (197)
T ss_dssp             -----------TC-CH-HHHHHHHHHHHHH----HH--HCTTTEEEEETTSCHHHHHHHHHHHHSCC-
T ss_pred             -----------cc-cH-HHHHHHHHHHHHH----HH--hCCCCEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence                       11 12 234443 344332    11  112468999999999999999999998763

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=99.63  E-value=3.1e-16  Score=128.66  Aligned_cols=160  Identities=14%  Similarity=0.104  Sum_probs=95.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhcccC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYR  141 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~-~g~~~~~~~~~~ll~~~l~~~~~~  141 (273)
                      ++.|+|+|+|||||||+++.|++++|+++++.|+++++...      ..+.+++. .|.....+....++.. +..    
T Consensus         4 m~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~g------~~~~~~~~~~g~~~~~~~~~~~~~~-l~~----   72 (175)
T 1via_A            4 AKNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN------QKVSEIFEQKRENFFREQEQKMADF-FSS----   72 (175)
T ss_dssp             -CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHT------SCHHHHHHHHCHHHHHHHHHHHHHH-HTT----
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHcC------CCHHHHHHHcCHHHHHHHHHHHHHH-HHc----
Confidence            34799999999999999999999999999999998875421      11222222 2322222222333322 221    


Q ss_pred             CcceEEEe-CCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHH
Q 024067          142 GESGFILD-GIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIY  220 (273)
Q Consensus       142 ~~~g~IlD-g~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y  220 (273)
                       ..++|++ |.+.... .. |   ...+.+|+|+++.+++.+|+..|....          .+ . ..+.+.+++.+.  
T Consensus        73 -~~~~vi~~g~~~~~~-~~-l---~~~~~~i~l~~~~e~~~~R~~~r~~~~----------r~-~-~~~~~~i~~~~~--  132 (175)
T 1via_A           73 -CEKACIATGGGFVNV-SN-L---EKAGFCIYLKADFEYLKKRLDKDEISK----------RP-L-FYDEIKAKKLYN--  132 (175)
T ss_dssp             -CCSEEEECCTTGGGS-TT-G---GGGCEEEEEECCHHHHTTCCCGGGTTT----------SC-T-TCCHHHHHHHHH--
T ss_pred             -cCCEEEECCCCEehh-hH-H---hcCCEEEEEeCCHHHHHHHHhcccCCC----------CC-C-cccHHHHHHHHH--
Confidence             2456666 5432221 11 2   235689999999999999987663100          01 0 111233332222  


Q ss_pred             HHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHHHHh
Q 024067          221 AEQGKSLEDYYSKQRKLLNFQVA-AAPGETWQGLLSALHL  259 (273)
Q Consensus       221 ~~~~~~l~~~y~~~~~~~~id~~-~s~~ev~~~I~~~l~~  259 (273)
                           ....+|.... .+.||++ .+++++++.|.+.+..
T Consensus       133 -----~r~~~y~~~~-~~~Idt~~~~~eev~~~I~~~l~~  166 (175)
T 1via_A          133 -----ERLSKYEQKA-NFILNIENKNIDELLSEIKKVIKE  166 (175)
T ss_dssp             -----HHHHHHHHHC-SEEEECTTCCHHHHHHHHHHHHC-
T ss_pred             -----HHHHHHHhcC-CEEEECCCCCHHHHHHHHHHHHHh
Confidence                 2234565422 4778988 6999999999998853

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=99.63  E-value=1.1e-14  Score=122.03  Aligned_cols=166  Identities=13%  Similarity=0.136  Sum_probs=105.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHH---HHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIF---ALLSKRLEE  137 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~---~ll~~~l~~  137 (273)
                      .++..|+|+|++||||||+++.|++.+|..+++.+++....         ... ....|....+....   ..+...+..
T Consensus        27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~---------~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~   96 (200)
T 4eun_A           27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPE---------NIA-TMQRGIPLTDEDRWPWLRSLAEWMDA   96 (200)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHH---------HHH-HHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHH---------HHH-HHhcCCCCCCcccccHHHHHHHHHHH
Confidence            35788999999999999999999999999999988764210         000 11123322222111   112221111


Q ss_pred             cccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHH
Q 024067          138 GYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKF  217 (273)
Q Consensus       138 ~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl  217 (273)
                      . ...+..+|+|.......+.+.+.....+..+|+|+|+.+++.+|+..|...+                ...+.++..+
T Consensus        97 ~-~~~g~~viid~~~~~~~~~~~l~~~~~~~~vv~l~~~~e~l~~Rl~~R~~~~----------------~~~~~l~~~~  159 (200)
T 4eun_A           97 R-ADAGVSTIITCSALKRTYRDVLREGPPSVDFLHLDGPAEVIKGRMSKREGHF----------------MPASLLQSQL  159 (200)
T ss_dssp             H-HHTTCCEEEEECCCCHHHHHHHTTSSSCCEEEEEECCHHHHHHHHTTCSCCS----------------SCGGGHHHHH
T ss_pred             H-HhcCCCEEEEchhhhHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHhcccCC----------------CCHHHHHHHH
Confidence            1 0123568888765666666666655556689999999999999998886432                1122333333


Q ss_pred             HHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcC
Q 024067          218 RIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQH  261 (273)
Q Consensus       218 ~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~  261 (273)
                      ..+       ..+|.+. ..+.||++++++++.++|...|....
T Consensus       160 ~~~-------~~~~~~~-~~~~Id~~~~~~e~~~~I~~~l~~~~  195 (200)
T 4eun_A          160 ATL-------EALEPDE-SGIVLDLRQPPEQLIERALTWLDIAP  195 (200)
T ss_dssp             HHC-------CCCCTTS-CEEEEETTSCHHHHHHHHHHHHCCCG
T ss_pred             HHh-------CCCCCCC-CeEEEECCCCHHHHHHHHHHHHHhcc
Confidence            222       1233322 36789999999999999999997543

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=99.62  E-value=4.2e-14  Score=115.63  Aligned_cols=159  Identities=11%  Similarity=0.088  Sum_probs=98.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHH-------HHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPED-------VIFALLSK  133 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~-------~~~~ll~~  133 (273)
                      .++..|+|+|+|||||||+++.|++.+|..+++.+++.+..         .+.. ...|..+.+.       .+..++..
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~---------~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~   75 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRR---------NIEK-MASGEPLNDDDRKPWLQALNDAAFA   75 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHH---------HHHH-HHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchH---------HHHH-hhcCcCCCccccccHHHHHHHHHHH
Confidence            35778999999999999999999999999999998764210         0111 0112222221       11122222


Q ss_pred             HHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCc-eEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHH
Q 024067          134 RLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVD-LVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASA  212 (273)
Q Consensus       134 ~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d-~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~  212 (273)
                      .+..     +.++|+|.......+.+.+.... ++ .+|+|+||.+++.+|+..|....               . ..+.
T Consensus        76 ~~~~-----~~~~vi~~~~~~~~~~~~l~~~~-~~~~vv~l~~~~e~~~~R~~~R~~~~---------------~-~~~~  133 (175)
T 1knq_A           76 MQRT-----NKVSLIVCSALKKHYRDLLREGN-PNLSFIYLKGDFDVIESRLKARKGHF---------------F-KTQM  133 (175)
T ss_dssp             HHHH-----CSEEEEECCCCSHHHHHHHHTTC-TTEEEEEEECCHHHHHHHHHTSTTCC---------------C-CHHH
T ss_pred             HHhc-----CCcEEEEeCchHHHHHHHHHhcC-CCEEEEEEECCHHHHHHHHHhccCCC---------------C-chHH
Confidence            2222     35788884323344445554433 45 79999999999999999886321               1 1333


Q ss_pred             HHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHH
Q 024067          213 WKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALH  258 (273)
Q Consensus       213 ~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~  258 (273)
                      +..++..|.    +.  +|... ..+.||++.+++++.++|...+.
T Consensus       134 ~~~~~~~~~----~~--~~~~~-~~~~Id~~~~~~~~~~~i~~~l~  172 (175)
T 1knq_A          134 LVTQFETLQ----EP--GADET-DVLVVDIDQPLEGVVASTIEVIK  172 (175)
T ss_dssp             HHHHHHHCC----CC--CTTCT-TEEEEECSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhh----Cc--ccCCC-CeEEEeCCCCHHHHHHHHHHHHh
Confidence            443332221    11  13322 36789999999999999999875

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=99.62  E-value=1.2e-14  Score=119.29  Aligned_cols=159  Identities=10%  Similarity=-0.005  Sum_probs=92.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCee-chhHHHHHHccCCChHHHHHHHHHHCCCCC----CH--HHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHI-SMGSLVRQELSPRSALYKQIANAVNEGKLV----PE--DVIFALLSKR  134 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~i-s~~dllr~~~~~~~~~g~~i~~~l~~g~~~----~~--~~~~~ll~~~  134 (273)
                      +|+.|+|+|+|||||||+++.|++++|.+++ +.           +..+..+.+++..|...    ..  +.+...+...
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~-----------~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~   72 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEP-----------EEMGQALRKLTPGFSGDPQEHPMWIPLMLDALQYA   72 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHSTTCEECCT-----------HHHHHHHHHTSTTCCSCGGGSTTHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEch-----------hhhHHHHHHhCccccchhhhhHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999988 32           12334444444323211    10  2334455555


Q ss_pred             HHhcccCCcceEEEeCCCCCHHHHH----HHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcH
Q 024067          135 LEEGYYRGESGFILDGIPRTRIQAE----ILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAA  210 (273)
Q Consensus       135 l~~~~~~~~~g~IlDg~P~~~~qa~----~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~  210 (273)
                      +..    .+..+|+|+.........    .+.....+-.+|+|+||++++.+|+..|...+                ...
T Consensus        73 l~~----~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~~r~----------------~~~  132 (183)
T 2vli_A           73 SRE----AAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQPQ----------------VNV  132 (183)
T ss_dssp             HHH----CSSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC--------------------CCH
T ss_pred             HHh----CCCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhccccc----------------hhH
Confidence            543    135578897665543222    22222223356999999999999998875211                112


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHHHHhcCC
Q 024067          211 SAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVA-AAPGETWQGLLSALHLQHM  262 (273)
Q Consensus       211 e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~-~s~~ev~~~I~~~l~~~~~  262 (273)
                      +.+++    +.+...+. .    .. + .||++ .+++++.++|.+.+.....
T Consensus       133 ~~~~~----~~~~~~~~-~----~~-~-~Id~~~~~~~~~~~~I~~~l~~~~~  174 (183)
T 2vli_A          133 GTVED----RLNELRGE-Q----FQ-T-HIDTAGLGTQQVAEQIAAQVGLTLA  174 (183)
T ss_dssp             HHHHH----HHHHHTSG-G----GC-S-EEECTTCCHHHHHHHHHHHHTCCCC
T ss_pred             HHHHH----HHHhhccc-c----cc-e-EeeCCCCCHHHHHHHHHHHHHHhcC
Confidence            23333    22222222 2    12 3 78987 7999999999999976543

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=99.62  E-value=2e-15  Score=132.07  Aligned_cols=163  Identities=19%  Similarity=0.222  Sum_probs=104.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH---hCCCee--chhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKL---LEVPHI--SMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLE  136 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~---~g~~~i--s~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~  136 (273)
                      +++.|+|+|+|||||||+++.|++.   +|++++  +.|. +++.+.+-...++.          .........+...+.
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~-~~~~l~~~~~~~e~----------~~~~~~~~~i~~~l~   71 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDL-IRESFPVWKEKYEE----------FIKKSTYRLIDSALK   71 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHH-HHTTSSSCCGGGHH----------HHHHHHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchH-HHHHHhhhhHHHHH----------HHHHHHHHHHHHHhh
Confidence            5789999999999999999999998   788887  7654 44333221111110          001112223333332


Q ss_pred             hcccCCcceEEEeCCCCCHHHHHHHHhh----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHH
Q 024067          137 EGYYRGESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASA  212 (273)
Q Consensus       137 ~~~~~~~~g~IlDg~P~~~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~  212 (273)
                           . ..+|+|+.+....+...|...    ..++++|+|+||.+++.+|+..|.. +                ...+.
T Consensus        72 -----~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~-~----------------~~~~~  128 (260)
T 3a4m_A           72 -----N-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGE-K----------------IPNEV  128 (260)
T ss_dssp             -----T-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTC-S----------------SCHHH
T ss_pred             -----C-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCC-C----------------CCHHH
Confidence                 2 689999988776666655432    4578999999999999999988752 1                12345


Q ss_pred             HHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCC--ChhHHHHHHHHHHHhcCC
Q 024067          213 WKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAA--APGETWQGLLSALHLQHM  262 (273)
Q Consensus       213 ~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~--s~~ev~~~I~~~l~~~~~  262 (273)
                      +++....|.+   +. ..|.-....+.||++.  +++++++.|...+..+..
T Consensus       129 l~~~~~~~e~---~~-~~~~~~~~~~~Id~~~~~~~~ei~~~I~~~l~~~~~  176 (260)
T 3a4m_A          129 IKKMYEKFDE---PG-KKYKWDEPFLIIDTTKDIDFNEIAKKLIEKSKEIPK  176 (260)
T ss_dssp             HHHHHHHCCC---TT-SSCGGGCCSEEEETTSCCCHHHHHHHHHHHHTSCCC
T ss_pred             HHHHHHHhcC---cc-ccCCCCCCEEEEeCCCCCCHHHHHHHHHhcccCCCC
Confidence            5544444431   11 1122123467899887  899999999999886543

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=99.62  E-value=4.5e-15  Score=131.43  Aligned_cols=170  Identities=16%  Similarity=0.163  Sum_probs=107.8

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCC-----CCCCHHH--------
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEG-----KLVPEDV--------  126 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g-----~~~~~~~--------  126 (273)
                      +.++++|+|+|+|||||||+|+.|+ .+|+++|++|++.++...++......+.+.+...     ..+....        
T Consensus        72 ~~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~  150 (281)
T 2f6r_A           72 PSGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGN  150 (281)
T ss_dssp             CTTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTC
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCC
Confidence            3467899999999999999999999 6899999999999887766655555544433211     1111111        


Q ss_pred             ----------HHH----HHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCC
Q 024067          127 ----------IFA----LLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSP  192 (273)
Q Consensus       127 ----------~~~----ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~  192 (273)
                                +..    .+.+.+......+...+|+||......   .+.  ..+|.+|+|++|++++++|+..|...  
T Consensus       151 ~~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~---~~~--~~~d~vI~l~a~~ev~~~Rl~~R~g~--  223 (281)
T 2f6r_A          151 KKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEA---GWQ--SMVHEVWTVVIPETEAVRRIVERDGL--  223 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTT---TGG--GGCSEEEEEECCHHHHHHHHHHHHCC--
T ss_pred             HHHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhcc---chH--HhCCEEEEEcCCHHHHHHHHHHcCCC--
Confidence                      011    111222211011235789998632211   111  24689999999999999999887411  


Q ss_pred             cccccccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067          193 HKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL  259 (273)
Q Consensus       193 ~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~  259 (273)
                                      +.+.+.+++...    .+..+++...+  +.||++++++++.++|...+..
T Consensus       224 ----------------s~e~~~~ri~~q----~~~~~~~~~AD--~vIdn~~s~eel~~~I~~~l~~  268 (281)
T 2f6r_A          224 ----------------SEAAAQSRLQSQ----MSGQQLVEQSN--VVLSTLWESHVTQSQVEKAWNL  268 (281)
T ss_dssp             ----------------CHHHHHHHHHTS----CCHHHHHHTCS--EEEECSSCHHHHHHHHHHHHHH
T ss_pred             ----------------CHHHHHHHHHHc----CChHhhHhhCC--EEEECCCCHHHHHHHHHHHHHH
Confidence                            234555555443    12334444444  5578888999999999988864

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=99.61  E-value=3.7e-15  Score=129.91  Aligned_cols=176  Identities=15%  Similarity=0.119  Sum_probs=106.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHhcccC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE-GKLVPEDVIFALLSKRLEEGYYR  141 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~-g~~~~~~~~~~ll~~~l~~~~~~  141 (273)
                      +..|+|+|+|||||||+++.|++.+|++++++|++++....+ .    .+.+++.. |.....+.....+.+.....   
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~g-~----~i~~i~~~~ge~~fr~~e~~~l~~l~~~~---  119 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKG-T----SVAEIFEHFGESVFREKETEALKKLSLMY---  119 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHSTT-S----CHHHHHHHHCHHHHHHHHHHHHHHHHHHC---
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhcC-c----cHHHHHHHhCcHHHHHHHHHHHHHHHhhc---
Confidence            668999999999999999999999999999999998865422 2    23333332 43333334444444433321   


Q ss_pred             CcceEEEe--CCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHH
Q 024067          142 GESGFILD--GIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRI  219 (273)
Q Consensus       142 ~~~g~IlD--g~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~  219 (273)
                       ...+|.+  |.+........+.    .+++|||+++.+++.+|+..+....   +..   ......+++.+...+++..
T Consensus       120 -~~~Via~GgG~v~~~~~~~~l~----~~~vV~L~a~~e~l~~Rl~~~~~~~---Rpl---~~~~~~~d~~~~~~~~l~~  188 (250)
T 3nwj_A          120 -HQVVVSTGGGAVIRPINWKYMH----KGISIWLDVPLEALAHRIAAVGTGS---RPL---LHDDESGDTYTAALNRLST  188 (250)
T ss_dssp             -SSEEEECCGGGGGSHHHHHHHT----TSEEEEEECCHHHHHHHHHC----------------------CHHHHHHHHHH
T ss_pred             -CCcEEecCCCeecCHHHHHHHh----CCcEEEEECCHHHHHHHHhhcCCCC---CCc---ccCCCcccchhhHHHHHHH
Confidence             2344544  4555555555553    2789999999999999998632111   000   0000112222333444544


Q ss_pred             HHHhhHHHHHHHHhcCcEEEE----------eCC-CChhHHHHHHHHHHHhc
Q 024067          220 YAEQGKSLEDYYSKQRKLLNF----------QVA-AAPGETWQGLLSALHLQ  260 (273)
Q Consensus       220 y~~~~~~l~~~y~~~~~~~~i----------d~~-~s~~ev~~~I~~~l~~~  260 (273)
                      +.+...   ..|...+.++.+          |++ .+++++.+.|.+.+...
T Consensus       189 l~~eR~---~lY~~ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~~~  237 (250)
T 3nwj_A          189 IWDARG---EAYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSY  237 (250)
T ss_dssp             HHHHHH---HHHTTSSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHH---HHHhhCCEEEEecccccccccccCCCCCHHHHHHHHHHHHHHH
Confidence            444333   457766555533          543 68999999999988764

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=99.61  E-value=7.1e-16  Score=127.73  Aligned_cols=119  Identities=16%  Similarity=0.181  Sum_probs=72.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~  141 (273)
                      +++.|+|+|+|||||||+++.|++.+|+++++.|++...........+......+..   .-.+.+...+...+..    
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~----   76 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGA---TAIMMLYHTAATILQS----   76 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHCCCSHHHHHHHHH---HHHHHHHHHHHHHHHT----
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHhcCccchHHHHHhhH---HHHHHHHHHHHHHHhC----
Confidence            578999999999999999999999999999999766432211000000000000000   0001111222233332    


Q ss_pred             CcceEEEeCCCCCHHHHHH---HHh-hCCCceEEEEccCHHHHHHHHhcCC
Q 024067          142 GESGFILDGIPRTRIQAEI---LDQ-IVDVDLVINFKSIEDQLVKRNLESE  188 (273)
Q Consensus       142 ~~~g~IlDg~P~~~~qa~~---l~~-~~~~d~vI~L~~~~e~l~~Rl~~R~  188 (273)
                       +.++|+|+++....+...   +.. ...++++|+|++|++++.+|+..|.
T Consensus        77 -g~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~  126 (193)
T 2rhm_A           77 -GQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRI  126 (193)
T ss_dssp             -TCCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHH
T ss_pred             -CCeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhc
Confidence             468999998843222222   222 2457899999999999999998775

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=99.59  E-value=4.2e-15  Score=126.37  Aligned_cols=179  Identities=13%  Similarity=0.096  Sum_probs=97.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHcc----CCChHH--HHHHHHHH-----------------CC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS----PRSALY--KQIANAVN-----------------EG  119 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~----~~~~~g--~~i~~~l~-----------------~g  119 (273)
                      +++|.|+|++||||||+++.|++.+|++++++|++++....    .+.++.  ..+.++..                 .|
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   84 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG   84 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence            46899999999999999999999999999999999985431    121111  11222211                 12


Q ss_pred             CCCCHHHH----H---------HHHHHHHHhc--ccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHH
Q 024067          120 KLVPEDVI----F---------ALLSKRLEEG--YYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRN  184 (273)
Q Consensus       120 ~~~~~~~~----~---------~ll~~~l~~~--~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl  184 (273)
                      ..+++...    .         ..+.+.+...  ......++|+||+...  ++    .+..+|++|+|+++.+++.+|+
T Consensus        85 ~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~~~~--~~----~~~~~d~~i~l~~~~e~~~~R~  158 (227)
T 1cke_A           85 EDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMG--TV----VFPDAPVKIFLDASSEERAHRR  158 (227)
T ss_dssp             EECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEESSCC--CC----CCTTCSEEEEEECCHHHHHHHH
T ss_pred             eeCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECCCcc--ce----EecCCCEEEEEeCCHHHHHHHH
Confidence            22222111    0         1222322211  0123578999997321  11    1235799999999999999995


Q ss_pred             hcCCcCCCcccccccCCCCCCCCCcHHHHHHHHH-HHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHHHHhc
Q 024067          185 LESEAFSPHKEFLRLGGARFSAADAASAWKEKFR-IYAEQGKSLEDYYSKQRKLLNFQVA-AAPGETWQGLLSALHLQ  260 (273)
Q Consensus       185 ~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~-~y~~~~~~l~~~y~~~~~~~~id~~-~s~~ev~~~I~~~l~~~  260 (273)
                      ..+...  .|.       ....++..+.+.+|+. .|.....|+..+    ...+.||++ .++++++++|.+.+...
T Consensus       159 ~~~l~~--rg~-------~~~~~~~~~~i~~R~~~~~~~~~~pl~~~----~~~~~Id~~~~~~~ev~~~I~~~l~~~  223 (227)
T 1cke_A          159 MLQLQV--KGF-------SVNFERLLAEIKERDDRDRNRAVAPLVPA----ADALVLDSTTLSIEQVIEKALQYARQK  223 (227)
T ss_dssp             HHHHHH--HTC-------CCCHHHHHHHHC-------------CCCC----TTCEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHh--CCc-------cCCHHHHHHHHHHHHHhhhhhcccCccCC----CCEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence            432000  000       0011222233333322 233222333221    123789988 79999999999988654

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=99.59  E-value=1.4e-14  Score=121.29  Aligned_cols=170  Identities=11%  Similarity=0.144  Sum_probs=104.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCC-----CCCHHHH-----------
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGK-----LVPEDVI-----------  127 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~-----~~~~~~~-----------  127 (273)
                      ++|+|+|++||||||+++.|++ +|++++++|+++++...++......+.+.+....     ......+           
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~   80 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL   80 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence            5799999999999999999999 9999999999998766554444444444332111     1111111           


Q ss_pred             ---HHHHH--------HHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccc
Q 024067          128 ---FALLS--------KRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEF  196 (273)
Q Consensus       128 ---~~ll~--------~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~  196 (273)
                         ..+..        +.+..  ..+...+|+|+.-.....   +.  ..+|.+|+|++|++++.+|+..|..       
T Consensus        81 ~~l~~l~~~~v~~~~~~~~~~--~~~~~~vive~~~l~~~~---~~--~~~~~~i~l~~~~e~~~~Rl~~R~~-------  146 (204)
T 2if2_A           81 RKLEEITHRALYKEIEKITKN--LSEDTLFILEASLLVEKG---TY--KNYDKLIVVYAPYEVCKERAIKRGM-------  146 (204)
T ss_dssp             HHHHHHHHHHHTTTHHHHHHH--SCTTCCEEEECSCSTTTT---CG--GGSSEEEEECCCHHHHHHHHHHTCC-------
T ss_pred             HHHHHhhCHHHHHHHHHHHHh--ccCCCEEEEEccccccCC---ch--hhCCEEEEEECCHHHHHHHHHHcCC-------
Confidence               11111        11111  111157889974211111   11  2378999999999999999988731       


Q ss_pred             cccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcCCCCCC
Q 024067          197 LRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHMNAVS  266 (273)
Q Consensus       197 y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~~~~~~  266 (273)
                                  +.+.+.+++....    +..+++...+  +.||++++++++.++|...+.....++..
T Consensus       147 ------------~~~~~~~~~~~~~----~~~~~~~~ad--~vId~~~~~~~~~~~i~~~l~~~~~~~~~  198 (204)
T 2if2_A          147 ------------SEEDFERRWKKQM----PIEEKVKYAD--YVIDNSGSIEETYKQVKKVYEELTRDPLE  198 (204)
T ss_dssp             ------------CHHHHHHHHTTSC----CHHHHGGGCS--EECCCSSCHHHHHHHHHHHHHTTCC----
T ss_pred             ------------CHHHHHHHHHhCC----ChhHHHhcCC--EEEECCCCHHHHHHHHHHHHHHHhcChhh
Confidence                        1234555554321    2233444344  56888889999999999999876666543

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=99.58  E-value=2e-14  Score=123.14  Aligned_cols=169  Identities=9%  Similarity=0.028  Sum_probs=96.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCC-CeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHH-----------
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV-PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIF-----------  128 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~-~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~-----------  128 (273)
                      .+++.|+|.|++||||||+++.|++.++. ..+++-.+  ...+.++++|+.|++++.+..........           
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~--treP~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~R~~~~   96 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVL--TREPGGTLLNESVRNLLFKAQGLDSLSELLFFIAMRREHF   96 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEE--EESSCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEe--eeCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999998865 33322100  12356789999999988753224433221           


Q ss_pred             -HHHHHHHHhcccCCcceEEEeCCCC------------CHHHHHHHHhh---CCCceEEEEccCHHHHHHHHhcCCcCCC
Q 024067          129 -ALLSKRLEEGYYRGESGFILDGIPR------------TRIQAEILDQI---VDVDLVINFKSIEDQLVKRNLESEAFSP  192 (273)
Q Consensus       129 -~ll~~~l~~~~~~~~~g~IlDg~P~------------~~~qa~~l~~~---~~~d~vI~L~~~~e~l~~Rl~~R~~~~~  192 (273)
                       +.+...+..     +..+|.|.|..            .......+..+   ..||++|+|++|+++.++|+ ++...  
T Consensus        97 ~~~I~paL~~-----g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~~e~~~~Ri-~rdr~--  168 (223)
T 3ld9_A           97 VKIIKPSLMQ-----KKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVDINESLSRS-CKNGY--  168 (223)
T ss_dssp             HHTHHHHHHT-----TCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC----------------
T ss_pred             HHHHHHHHhc-----CCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCCHHHHHHHh-ccCcc--
Confidence             112223332     35678886532            12222333322   37999999999999999998 33211  


Q ss_pred             cccccccCCCCCCCCCcHHHHHHHH-HHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067          193 HKEFLRLGGARFSAADAASAWKEKF-RIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ  260 (273)
Q Consensus       193 ~~~~y~~~~~~~~~~d~~e~~~~rl-~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~  260 (273)
                                    +.....+.+|+ +.|.+    +.+.|  .+.++.||+++++++| ++|.+.|...
T Consensus       169 --------------E~~~~e~~~rv~~~y~~----la~~~--~~~~~vIDa~~sieeV-~~I~~~l~~~  216 (223)
T 3ld9_A          169 --------------EFADMEFYYRVRDGFYD----IAKKN--PHRCHVITDKSETYDI-DDINFVHLEV  216 (223)
T ss_dssp             -----------------CHHHHHHHHHHHHH----HHHHC--TTTEEEEESSCSSSCC-CHHHHHHHHH
T ss_pred             --------------ccchHHHHHHHHHHHHH----HHHHC--CCCEEEEcCCCCHHHH-HHHHHHHHHH
Confidence                          11112344444 34433    22223  2368999999999999 9998888653

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=99.57  E-value=1.3e-14  Score=119.38  Aligned_cols=109  Identities=20%  Similarity=0.234  Sum_probs=73.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~  141 (273)
                      ++..|+|+|+|||||||+++.|++.+|+.++++|+++++.... ...++.     ........+.+...+...+..    
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~----   79 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLY-DGYDEE-----YDCPILDEDRVVDELDNQMRE----   79 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTCE-EEEETT-----TTEEEECHHHHHHHHHHHHHH----
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcchh-hhhhhh-----hcCccCChHHHHHHHHHHHhc----
Confidence            4568999999999999999999999999999999998865110 000000     001112334445555554443    


Q ss_pred             CcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCC
Q 024067          142 GESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE  188 (273)
Q Consensus       142 ~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~  188 (273)
                        .++|+|+........      ..++.+|+|+|+.+++.+|+.+|.
T Consensus        80 --g~~vv~~~~~~~~~~------~~~~~vi~L~~~~e~l~~R~~~r~  118 (180)
T 3iij_A           80 --GGVIVDYHGCDFFPE------RWFHIVFVLRTDTNVLYERLETRG  118 (180)
T ss_dssp             --CCEEEECSCCTTSCG------GGCSEEEEEECCHHHHHHHHHHTT
T ss_pred             --CCEEEEechhhhcch------hcCCEEEEEECCHHHHHHHHHHcC
Confidence              467788654322110      127899999999999999999886

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=99.57  E-value=1.5e-15  Score=134.93  Aligned_cols=163  Identities=15%  Similarity=0.098  Sum_probs=99.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh-CCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~-g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~  141 (273)
                      +..|+|+|+|||||||+++.|++++ |+.+|++| .+++.+...+. +.. ..+...+.....+.....+...+...  .
T Consensus         2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D-~~r~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~l~~~--~   76 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD-DYRQSIMAHEE-RDE-YKYTKKKEGIVTGMQFDTAKSILYGG--D   76 (301)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH-HHHHHHTTSCC-CC----CCHHHHHHHHHHHHHHHHHHTTSC--T
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc-HHHHHhccCCc-ccc-cccchhhhhHHHHHHHHHHHHHHhhc--c
Confidence            4689999999999999999999985 99999998 55554432111 000 00000000001122233333333110  2


Q ss_pred             CcceEEEeCCCCCHHHHHHHHhh----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHH
Q 024067          142 GESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKF  217 (273)
Q Consensus       142 ~~~g~IlDg~P~~~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl  217 (273)
                      .+.++|+|+++.+..+.+.|...    ..+..+|+|++|.+++.+|+..|..+.                ..++.+++++
T Consensus        77 ~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~----------------~~~e~i~~~~  140 (301)
T 1ltq_A           77 SVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKA----------------VPIDVLRSMY  140 (301)
T ss_dssp             TCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGGGC----------------CCHHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccCCC----------------CCHHHHHHHH
Confidence            35789999999988777666533    345589999999999999999887422                2367888888


Q ss_pred             HHHHHhhHHHHHHH--Hh-cCcEEEEeCCCChhH
Q 024067          218 RIYAEQGKSLEDYY--SK-QRKLLNFQVAAAPGE  248 (273)
Q Consensus       218 ~~y~~~~~~l~~~y--~~-~~~~~~id~~~s~~e  248 (273)
                      +.|+.....  ..|  .. ....+.+|..+++++
T Consensus       141 ~~~~~~~~~--~~~~~~~~~~~~i~iD~dgtl~~  172 (301)
T 1ltq_A          141 KSMREYLGL--PVYNGTPGKPKAVIFDVDGTLAK  172 (301)
T ss_dssp             HHHHHHHTC--CCCCCCTTSCEEEEEETBTTTBC
T ss_pred             HHHhcccCC--cceeccccccceEEEeCCCCccc
Confidence            888654221  101  11 123566776665444

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=99.56  E-value=8.4e-14  Score=115.94  Aligned_cols=170  Identities=11%  Similarity=0.069  Sum_probs=93.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcc-cCC
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY-YRG  142 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~-~~~  142 (273)
                      +.|+|+|+|||||||+++.|+++++..++....       .+..+   +..+...+...+.......+..++.... ...
T Consensus         1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~-------~~~~~---~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~   70 (205)
T 2jaq_A            1 MKIAIFGTVGAGKSTISAEISKKLGYEIFKEPV-------EENPY---FEQYYKDLKKTVFKMQIYMLTARSKQLKQAKN   70 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHCCEEECCCG-------GGCTT---HHHHTTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             CEEEEECCCccCHHHHHHHHHHhcCCcEEcccc-------cccHH---HHHHHhCccccchhHHHHHHHHHHHHHHHhhc
Confidence            478999999999999999999999987764210       00010   1111100000001111112222221100 011


Q ss_pred             cceEEEeCCCCCHH--HH-----------------HHHH----hh-------CCCceEEEEccCHHHHHHHHhcCCcCCC
Q 024067          143 ESGFILDGIPRTRI--QA-----------------EILD----QI-------VDVDLVINFKSIEDQLVKRNLESEAFSP  192 (273)
Q Consensus       143 ~~g~IlDg~P~~~~--qa-----------------~~l~----~~-------~~~d~vI~L~~~~e~l~~Rl~~R~~~~~  192 (273)
                      ...+|+|.++.+..  +.                 ..++    .+       ..||++|+|++|++++.+|+..|.. + 
T Consensus        71 ~~~vi~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R~r-~-  148 (205)
T 2jaq_A           71 LENIIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKRGR-S-  148 (205)
T ss_dssp             --CEEEESCTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHHTC-H-
T ss_pred             cCCEEEEeccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHcCC-h-
Confidence            23599999876411  11                 0111    11       3589999999999999999987641 1 


Q ss_pred             cccccccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067          193 HKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ  260 (273)
Q Consensus       193 ~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~  260 (273)
                          +       ....+ +.+.+++..+.   ..+.++|.+....+.||+++++++++++|...+...
T Consensus       149 ----~-------~~~~~-~~~~~~l~~~~---~~~~~~~~~~~~~~~Id~~~~~~~v~~~I~~~l~~~  201 (205)
T 2jaq_A          149 ----E-------ELLIG-EEYWETLNKNY---EEFYKQNVYDFPFFVVDAELDVKTQIELIMNKLNSI  201 (205)
T ss_dssp             ----H-------HHHSC-HHHHHHHHHHH---HHHHHHHTTTSCEEEEETTSCHHHHHHHHHHHHHHC
T ss_pred             ----h-------hhcCc-HHHHHHHHHHH---HHHHHHccccCcEEEEECCCCHHHHHHHHHHHHHHh
Confidence                0       00001 12334443332   234455653345788999999999999999998653

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=99.55  E-value=1e-13  Score=115.44  Aligned_cols=168  Identities=11%  Similarity=0.076  Sum_probs=100.4

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHH----HCCCCCCHHHHHH------
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAV----NEGKLVPEDVIFA------  129 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l----~~g~~~~~~~~~~------  129 (273)
                      +.+++.|+|+|++||||||+++.|++. |+++|++|+++++.. ++.+  ..+.+.+    .+|. +....+..      
T Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~-~~~~--~~i~~~~~~~~~~g~-i~~~~l~~~~~~~~   79 (203)
T 1uf9_A            5 AKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAR-ENKE--EELKRLFPEAVVGGR-LDRRALARLVFSDP   79 (203)
T ss_dssp             -CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH-HHTH--HHHHHHCGGGEETTE-ECHHHHHHHHTTSH
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc-CChH--HHHHHHHHHHHhCCC-cCHHHHHHHHhCCH
Confidence            456789999999999999999999998 999999999987654 2222  2222222    1121 22221111      


Q ss_pred             --------HHH-----HHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccc
Q 024067          130 --------LLS-----KRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEF  196 (273)
Q Consensus       130 --------ll~-----~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~  196 (273)
                              ++.     +.+......+...+|+|+ |.....  .+.  ..+|.+|+|+++.+++.+|+..|...      
T Consensus        80 ~~~~~l~~~~~~~i~~~~i~~~~~~g~~~vi~d~-~~l~~~--~~~--~~~d~~i~l~~~~e~~~~R~~~R~~~------  148 (203)
T 1uf9_A           80 ERLKALEAVVHPEVRRLLMEELSRLEAPLVFLEI-PLLFEK--GWE--GRLHGTLLVAAPLEERVRRVMARSGL------  148 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEEC-TTTTTT--TCG--GGSSEEEEECCCHHHHHHHHHTTTCC------
T ss_pred             HHHHHHHHHhChHHHHHHHHHhhhcCCCEEEEEe-cceecc--Cch--hhCCEEEEEECCHHHHHHHHHHcCCC------
Confidence                    111     112111011245678886 322110  011  24689999999999999999877411      


Q ss_pred             cccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcC
Q 024067          197 LRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQH  261 (273)
Q Consensus       197 y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~  261 (273)
                                  +.+.+.+++...    .+...++...+  +.||++++++++.++|...+....
T Consensus       149 ------------~~~~~~~~i~~~----~~~~~~~~~ad--~vId~~~~~~~~~~~i~~~~~~~~  195 (203)
T 1uf9_A          149 ------------SREEVLARERAQ----MPEEEKRKRAT--WVLENTGSLEDLERALKAVLAELT  195 (203)
T ss_dssp             ------------TTHHHHHHHTTS----CCHHHHHHHCS--EEECCSSHHHHHHHHHHHHHHSCC
T ss_pred             ------------CHHHHHHHHHHC----CChhHHHHhCC--EEEECCCCHHHHHHHHHHHHHHHH
Confidence                        112344444331    11223334444  468888899999999999987543

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=99.54  E-value=3e-14  Score=116.07  Aligned_cols=163  Identities=12%  Similarity=0.150  Sum_probs=90.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG  142 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~  142 (273)
                      +..|+|+|+|||||||+++.|++.++.++++.|+++++...  ..++...+.   .|.....+....++.. +..     
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~~--~~i~~i~~~---~g~~~~~~~~~~~l~~-l~~-----   72 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG--ADVGWVFDL---EGEEGFRDREEKVINE-LTE-----   72 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHT--SCHHHHHHH---HHHHHHHHHHHHHHHH-HHT-----
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHhC--cCHHHHHHH---HhHHHHHHHHHHHHHH-HHh-----
Confidence            56799999999999999999999999999999988875431  122211110   1110011111122222 221     


Q ss_pred             cceEEEe---CCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCc-HHHHHHHHH
Q 024067          143 ESGFILD---GIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADA-ASAWKEKFR  218 (273)
Q Consensus       143 ~~g~IlD---g~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~-~e~~~~rl~  218 (273)
                      ..++++.   +.+......+.|..   ++++++|+++++++.+|+..|...+           ....++. .+.+...+.
T Consensus        73 ~~~~v~~~~~~~~~~~~~~~~l~~---~~~~i~l~~~~~~l~~R~~~r~~r~-----------~~~~~~~~~~~~~~~~~  138 (173)
T 1kag_A           73 KQGIVLATGGGSVKSRETRNRLSA---RGVVVYLETTIEKQLARTQRDKKRP-----------LLHVETPPREVLEALAN  138 (173)
T ss_dssp             SSSEEEECCTTGGGSHHHHHHHHH---HSEEEECCCCHHHHHSCC------C-----------CSSSSCCCHHHHHHHHH
T ss_pred             CCCeEEECCCeEEecHHHHHHHHh---CCEEEEEeCCHHHHHHHHhCCCCCC-----------CCCCCCchHHHHHHHHH
Confidence            2456654   34444444444442   4689999999999999998774211           0011222 344443332


Q ss_pred             HHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHHHH
Q 024067          219 IYAEQGKSLEDYYSKQRKLLNFQVA-AAPGETWQGLLSALH  258 (273)
Q Consensus       219 ~y~~~~~~l~~~y~~~~~~~~id~~-~s~~ev~~~I~~~l~  258 (273)
                      ..       ..+|.... .+.||++ .++++++++|...+.
T Consensus       139 ~r-------~~~~~~~a-~~~id~~~~~~~~~~~~i~~~l~  171 (173)
T 1kag_A          139 ER-------NPLYEEIA-DVTIRTDDQSAKVVANQIIHMLE  171 (173)
T ss_dssp             HH-------HHHHHHHC-SEEC-----CHHHHHHHHHHHHC
T ss_pred             HH-------HHHHHhhC-CEEEECCCCCHHHHHHHHHHHHH
Confidence            21       13454433 3667877 799999999998875

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=99.54  E-value=1.2e-13  Score=117.14  Aligned_cols=168  Identities=11%  Similarity=0.021  Sum_probs=111.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCC-----CCCH-------------
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGK-----LVPE-------------  124 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~-----~~~~-------------  124 (273)
                      +-.|.|+|++||||||+++.|++ +|+++|++|.+.++...++++....|.+.+..+.     .+..             
T Consensus         9 ~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~   87 (210)
T 4i1u_A            9 MYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDA   87 (210)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHH
Confidence            45688999999999999999998 9999999999999888887777777776664322     2222             


Q ss_pred             -----HHHHHHHHHHHHhcc-cCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccc
Q 024067          125 -----DVIFALLSKRLEEGY-YRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLR  198 (273)
Q Consensus       125 -----~~~~~ll~~~l~~~~-~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~  198 (273)
                           .++...+.+.+.... ..+..-+|+|. |.-.+... +.  ..+|.+|+++||+++.++|+..|..         
T Consensus        88 ~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~-pLL~E~~~-~~--~~~D~vi~V~ap~e~r~~Rl~~Rdg---------  154 (210)
T 4i1u_A           88 RRRLEAITHPLIRAETEREARDAQGPYVIFVV-PLLVESRN-WK--ARCDRVLVVDCPVDTQIARVMQRNG---------  154 (210)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCSSSEEEEC-TTCTTCHH-HH--HHCSEEEEEECCHHHHHHHHHHHHC---------
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEE-ecccccCC-cc--ccCCeEEEEECCHHHHHHHHHhcCC---------
Confidence                 122222222222110 01233467775 44333111 11  1478999999999999999998852         


Q ss_pred             cCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHHHHh
Q 024067          199 LGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVA-AAPGETWQGLLSALHL  259 (273)
Q Consensus       199 ~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~-~s~~ev~~~I~~~l~~  259 (273)
                               -+++.+.+|+...    .+..+++...+  +.||++ ++++++.++|...+..
T Consensus       155 ---------~s~eea~~ri~~Q----~~~eek~~~AD--~VIdN~~gsle~l~~qV~~l~~~  201 (210)
T 4i1u_A          155 ---------FTREQVEAIIARQ----ATREARLAAAD--DVIVNDAATPDALAVQVDALHQR  201 (210)
T ss_dssp             ---------CCHHHHHHHHHHS----CCHHHHHHTCS--EEEECSSCCHHHHHHHHHHHHHH
T ss_pred             ---------CCHHHHHHHHHHc----CChHHHHHhCC--EEEECCCCCHHHHHHHHHHHHHH
Confidence                     1345666666432    24455555555  457888 8999999999888764

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=99.53  E-value=3.6e-13  Score=114.83  Aligned_cols=171  Identities=12%  Similarity=0.073  Sum_probs=109.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCC-CCCHHHHH-----------H
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGK-LVPEDVIF-----------A  129 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~-~~~~~~~~-----------~  129 (273)
                      +++.|+|.|++||||||+++.|++.++....    +++ +...++++|+.|++++.+.. ........           +
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~----~~~-ep~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~~   78 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKLQPNCK----LLK-FPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVD   78 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHHCSSEE----EEE-SSCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcccce----EEE-ecCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence            6889999999999999999999999987322    232 23357899999999998654 23332211           1


Q ss_pred             HHHHHHHhcccCCcceEEEeCCCCC--HHH---------HHHHHh----hCCCceEEEE-ccCHHHHHHHHhcCCcCCCc
Q 024067          130 LLSKRLEEGYYRGESGFILDGIPRT--RIQ---------AEILDQ----IVDVDLVINF-KSIEDQLVKRNLESEAFSPH  193 (273)
Q Consensus       130 ll~~~l~~~~~~~~~g~IlDg~P~~--~~q---------a~~l~~----~~~~d~vI~L-~~~~e~l~~Rl~~R~~~~~~  193 (273)
                      .+...+..     +..+|.|.|..+  ..|         .+.+..    ...||++|+| ++|++++.+|+..+. +   
T Consensus        79 ~I~paL~~-----g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~-d---  149 (216)
T 3tmk_A           79 KIKKDLLE-----GKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGD-E---  149 (216)
T ss_dssp             HHHHHHHT-----TCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSC-C---
T ss_pred             HHHHHHHc-----CCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCc-c---
Confidence            22233332     456788865332  111         122222    1469999999 999999988864322 1   


Q ss_pred             ccccccCCCCCCCCCcHHHHHHHHH-HHHHhhHHHHHHHHhcCcEEEEe-CCCChhHHHHHHHHHHHhcC
Q 024067          194 KEFLRLGGARFSAADAASAWKEKFR-IYAEQGKSLEDYYSKQRKLLNFQ-VAAAPGETWQGLLSALHLQH  261 (273)
Q Consensus       194 ~~~y~~~~~~~~~~d~~e~~~~rl~-~y~~~~~~l~~~y~~~~~~~~id-~~~s~~ev~~~I~~~l~~~~  261 (273)
                                 +.+ . ..+.++++ .|.+....... | ....++.|| +++++++|.++|.+.|....
T Consensus       150 -----------r~E-~-~~f~~rvr~~Y~~la~~~~~-~-~~~~~~vID~a~~s~eeV~~~I~~~i~~~l  204 (216)
T 3tmk_A          150 -----------RYE-T-VKFQEKVKQTFMKLLDKEIR-K-GDESITIVDVTNKGIQEVEALIWQIVEPVL  204 (216)
T ss_dssp             -----------TTC-C-HHHHHHHHHHHHHHHHHHHH-T-TCCSEEEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred             -----------ccc-H-HHHHHHHHHHHHHHHHhccc-c-CCCCEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence                       112 2 24555554 34433322111 1 235699999 89999999999999988654

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=99.50  E-value=1.6e-13  Score=115.26  Aligned_cols=171  Identities=13%  Similarity=0.057  Sum_probs=102.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCC-CeechhHHHHHHccC---CCh----HHHHHHHHHHCCCCCCHH-------
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV-PHISMGSLVRQELSP---RSA----LYKQIANAVNEGKLVPED-------  125 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~-~~is~~dllr~~~~~---~~~----~g~~i~~~l~~g~~~~~~-------  125 (273)
                      .+++.|+|+|||||||||+++.|++.++- .+.++.+..|+....   +..    ..+.+...+.+|..+...       
T Consensus        10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (204)
T 2qor_A           10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFY   89 (204)
T ss_dssp             CCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCee
Confidence            46788999999999999999999999853 333333333321100   000    012344444445443210       


Q ss_pred             -HHHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCC--CceEEEEc-cCHHHHHHHHhcCCcCCCcccccccCC
Q 024067          126 -VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD--VDLVINFK-SIEDQLVKRNLESEAFSPHKEFLRLGG  201 (273)
Q Consensus       126 -~~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~--~d~vI~L~-~~~e~l~~Rl~~R~~~~~~~~~y~~~~  201 (273)
                       .....+...+..     +.++|+|+.+....+   +.....  ..++|+|+ ++.+++.+|+..|..            
T Consensus        90 ~~~~~~i~~~l~~-----g~~vi~d~~~~~~~~---l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~------------  149 (204)
T 2qor_A           90 GTLKSEYDLAVGE-----GKICLFEMNINGVKQ---LKESKHIQDGIYIFVKPPSIDILLGRLKNRNT------------  149 (204)
T ss_dssp             EEEHHHHHHHHHT-----TCEEEEECCHHHHHH---HHHCSSCSCCEEEEEECSCHHHHHHHHHTCTT------------
T ss_pred             cCCHHHHHHHHHc-----CCeEEEEECHHHHHH---HHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCC------------
Confidence             011233344443     478999987654433   322222  23789998 999999999988752            


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcCC
Q 024067          202 ARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHM  262 (273)
Q Consensus       202 ~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~~  262 (273)
                            ++++.+.+|+..++....+.  |....+ .+.+| + ++++++++|.+.|.....
T Consensus       150 ------~~~~~i~~rl~~~~~~~~~~--~~~~~d-~vi~n-~-~~e~~~~~i~~~i~~~~~  199 (204)
T 2qor_A          150 ------EKPEEINKRMQELTREMDEA--DKVGFN-YFIVN-D-DLARTYAELREYLLGSYP  199 (204)
T ss_dssp             ------SCHHHHHHHHHHHHHHHHHH--HHHTCS-EEEEC-S-SHHHHHHHHHHHHHHHCT
T ss_pred             ------CCHHHHHHHHHHHHHHHHHh--hhccCc-EEEEC-c-CHHHHHHHHHHHHHHHhh
Confidence                  23567888887765433221  333333 34344 4 899999999999986543

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=99.50  E-value=1.2e-13  Score=118.78  Aligned_cols=174  Identities=13%  Similarity=0.138  Sum_probs=102.3

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHc----cCCCh------HHHHHH--------------HH
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL----SPRSA------LYKQIA--------------NA  115 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~----~~~~~------~g~~i~--------------~~  115 (273)
                      +.++.+|+|+|++||||||+++.|++++|+++++.|++++...    ..+.+      +.+.+.              ++
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i   92 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQHPISFGRSETGDQLV   92 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHSCCEEEEETTTEEEE
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcceeeeeccCCCcccHHHHHHHHHhccccccccCCccceE
Confidence            3467899999999999999999999999999999999998632    12222      111111              11


Q ss_pred             HHCCCCC----CHHHHHH-------------HHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHH
Q 024067          116 VNEGKLV----PEDVIFA-------------LLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIED  178 (273)
Q Consensus       116 l~~g~~~----~~~~~~~-------------ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e  178 (273)
                      +..|+.+    ..+.+..             .+.+.+...  ..+.++|+||+....   ..+   ..++++|+|+++++
T Consensus        93 ~~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~~~~--~~~~~~v~~g~~~~~---~~l---~~~d~vi~L~a~~e  164 (236)
T 1q3t_A           93 FVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEI--AQQGGIVMDGRDIGT---VVL---PQAELKIFLVASVD  164 (236)
T ss_dssp             EETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHHHHH--HTTSCEEEECSSCSS---SSG---GGCSEEEEEECCHH
T ss_pred             eECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHHHHh--cccCCEEEECCcchh---hhc---cCCCEEEEEECCHH
Confidence            1234322    2222221             122211111  124689999986531   011   24689999999999


Q ss_pred             HHHHHHh----cCCcCCCcccccccCCCCCCCCCcHHHHHHHHHH--HHHhhHHHHHHHHhcCcEEEEeCCC-ChhHHHH
Q 024067          179 QLVKRNL----ESEAFSPHKEFLRLGGARFSAADAASAWKEKFRI--YAEQGKSLEDYYSKQRKLLNFQVAA-APGETWQ  251 (273)
Q Consensus       179 ~l~~Rl~----~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~--y~~~~~~l~~~y~~~~~~~~id~~~-s~~ev~~  251 (273)
                      ++.+|+.    .|..                 ..+.+.+.+++..  +......+..+|.. ...+.||+++ +++++++
T Consensus       165 ~~~~R~~~~~~~R~~-----------------~~~~e~~~~~i~~R~~~~~~~~~~p~~~~-~d~~vId~~~~s~eev~~  226 (236)
T 1q3t_A          165 ERAERRYKENIAKGI-----------------ETDLETLKKEIAARDYKDSHRETSPLKQA-EDAVYLDTTGLNIQEVVE  226 (236)
T ss_dssp             HHHHHHHHHHHHTTC-----------------CCCHHHHHHHHHHHHHHHTTCSSSCCSCC-TTCEEEECSSCCHHHHHH
T ss_pred             HHHHHHHHHHHhcCC-----------------CCCHHHHHHHHHHHhhhhhhccccccccc-CCEEEEcCCCCCHHHHHH
Confidence            9999973    3331                 1123344444432  21111111112322 2246789885 9999999


Q ss_pred             HHHHHHHh
Q 024067          252 GLLSALHL  259 (273)
Q Consensus       252 ~I~~~l~~  259 (273)
                      +|...+..
T Consensus       227 ~I~~~l~~  234 (236)
T 1q3t_A          227 KIKAEAEK  234 (236)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998864

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=99.48  E-value=1.7e-12  Score=108.52  Aligned_cols=163  Identities=15%  Similarity=0.117  Sum_probs=96.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHcc----CCCh--HHHHHHHHH-----------------HCCCC
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS----PRSA--LYKQIANAV-----------------NEGKL  121 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~----~~~~--~g~~i~~~l-----------------~~g~~  121 (273)
                      .|.|+|++||||||+++.|++.+|+++++.|++.+....    .+.+  ....+.+.+                 ..|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   83 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADGED   83 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEEETTEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEEECCee
Confidence            789999999999999999999999999999999876431    1111  001121111                 12322


Q ss_pred             CCH----HHH-------------HHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHH
Q 024067          122 VPE----DVI-------------FALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRN  184 (273)
Q Consensus       122 ~~~----~~~-------------~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl  184 (273)
                      ++.    +.+             ...+...+...   . .++|+||.... .   .  ....+|++|+|++|++++.+|+
T Consensus        84 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~-~~~vi~g~~~~-~---~--~~~~~d~~i~l~a~~e~~~~R~  153 (208)
T 3ake_A           84 LTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEV---P-PPFVAEGRDMG-T---A--VFPEAAHKFYLTASPEVRAWRR  153 (208)
T ss_dssp             CGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHS---C-SCEEEEESSCC-C---C--CCTTCSEEEEEECCHHHHHHHH
T ss_pred             CchhhChHHHHHHHHHhcccHHHHHHHHHHHHHh---c-CCEEEEcccee-E---E--EecCCcEEEEEECCHHHHHHHH
Confidence            221    111             11111222211   2 68999986432 0   0  0124789999999999999999


Q ss_pred             hcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCC-ChhHHHHHHHHHHH
Q 024067          185 LESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAA-APGETWQGLLSALH  258 (273)
Q Consensus       185 ~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~-s~~ev~~~I~~~l~  258 (273)
                      ..|..                  .+.+.+.+++..-.....   .++......+.||+++ +++++.++|.+.+.
T Consensus       154 ~~r~~------------------~~~~~~~~~~~~R~~~~~---~~~~~~ad~~~Id~~~~~~ee~~~~I~~~~~  207 (208)
T 3ake_A          154 ARERP------------------QAYEEVLRDLLRRDERDK---AQSAPAPDALVLDTGGMTLDEVVAWVLAHIR  207 (208)
T ss_dssp             HHTSS------------------SCHHHHHHHHHHHHHTC-----CCCCCTTCEEEETTTSCHHHHHHHHHHHHH
T ss_pred             Hhhcc------------------cCHHHHHHHHHHHHHHHh---hcccCCCCEEEEECCCCCHHHHHHHHHHHHh
Confidence            87742                  112334444432111100   0112223357899886 99999999998774

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=99.47  E-value=2.5e-14  Score=121.09  Aligned_cols=171  Identities=12%  Similarity=0.144  Sum_probs=99.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHH----ccCCChHHHHHHHH-------H-----------HCCC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE----LSPRSALYKQIANA-------V-----------NEGK  120 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~----~~~~~~~g~~i~~~-------l-----------~~g~  120 (273)
                      ++.|+|+|+|||||||+++.|++.+|++++++|++++..    ...+.  ++.+.++       +           ..|.
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~f~~~~~~g~~i~~~g~   80 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNK--TEDFAKLVDQTTLDLTYKADKGQCVILDNE   80 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTS--CSCHHHHHHTCCEEEEECTTCCEEEEETTE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHHHHHHHHhhh--hHHHHHHHHhccccccccccccceEEeCCc
Confidence            568999999999999999999999999999999998853    22221  2233333       1           2343


Q ss_pred             CCCHH----HHHHH---------HHHHHHh--cccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHh
Q 024067          121 LVPED----VIFAL---------LSKRLEE--GYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNL  185 (273)
Q Consensus       121 ~~~~~----~~~~l---------l~~~l~~--~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~  185 (273)
                      .++.+    .+...         +.+.+..  .....+.++|+||-  .... .   -...++++|+|++|.+++.+|+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~vi~g~--~~~~-~---~~~~~~~vi~l~a~~e~~~~R~~  154 (219)
T 2h92_A           81 DVTDFLRNNDVTQHVSYVASKEPVRSFAVKKQKELAAEKGIVMDGR--DIGT-V---VLPDADLKVYMIASVEERAERRY  154 (219)
T ss_dssp             ECGGGSSSSHHHHHHHHHHTSHHHHHHHHHHHHHHHTTCCEEEEES--SCCC-C---CCTTCSEEEEEECCHHHHHHHHH
T ss_pred             cchhhcCcHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcEEEEcC--Cccc-e---ecCCCCEEEEEECCHHHHHHHHH
Confidence            32221    11111         1111110  00112468999983  1100 0   11246899999999999999975


Q ss_pred             c----CCcCCCcccccccCCCCCCCCCcHHHHHHHHHHH--HHhhHHHHHHHHhcCcEEEEeCCC-ChhHHHHHHHHHHH
Q 024067          186 E----SEAFSPHKEFLRLGGARFSAADAASAWKEKFRIY--AEQGKSLEDYYSKQRKLLNFQVAA-APGETWQGLLSALH  258 (273)
Q Consensus       186 ~----R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y--~~~~~~l~~~y~~~~~~~~id~~~-s~~ev~~~I~~~l~  258 (273)
                      .    |..                 .++.+.+.+++..-  .+....+..+|.. ...+.||+++ ++++++++|.+.+.
T Consensus       155 ~~~~~r~~-----------------~~~~e~~~~~~~~r~~~d~~r~~~~~~~~-~d~~~Id~~~~~~ee~~~~I~~~l~  216 (219)
T 2h92_A          155 KDNQLRGI-----------------ESNFEDLKRDIEARDQYDMNREISPLRKA-DDAVTLDTTGKSIEEVTDEILAMVS  216 (219)
T ss_dssp             HHHHHTTC-----------------CCCHHHHHHHHHHHHHHHHHCSSSCSCCC-TTCEEEECTTCCHHHHHHHHHHHHH
T ss_pred             HHHHhcCc-----------------ccCHHHHHHHHHHHHHhhhhhhccccccC-CCeEEEECCCCCHHHHHHHHHHHHh
Confidence            3    221                 12345566655321  1111111123332 2246788875 99999999999886


Q ss_pred             h
Q 024067          259 L  259 (273)
Q Consensus       259 ~  259 (273)
                      .
T Consensus       217 ~  217 (219)
T 2h92_A          217 Q  217 (219)
T ss_dssp             T
T ss_pred             c
Confidence            4

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=99.44  E-value=5.6e-14  Score=122.10  Aligned_cols=174  Identities=13%  Similarity=0.069  Sum_probs=100.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCC----------eechhHHHHHHccCCChHHHHHHHHHHCCCCC-------C
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVP----------HISMGSLVRQELSPRSALYKQIANAVNEGKLV-------P  123 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~----------~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~-------~  123 (273)
                      .++++|.|+|+|||||||+|+.|++.+|++          ++++|++++.. .     ...+.. ...|...       .
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~-~-----~~~~~~-~~~g~~~f~~~~~~d   92 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVL-T-----SEQKAK-ALKGQFNFDHPDAFD   92 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCC-C-----HHHHHH-HHTTCSCTTSGGGBC
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccccc-C-----hhhhhh-hccCCCCCCCcchhh
Confidence            457889999999999999999999999988          79999988631 1     111111 1223222       1


Q ss_pred             HHHHHHHHHHHHHhcc--------------------cCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHH
Q 024067          124 EDVIFALLSKRLEEGY--------------------YRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKR  183 (273)
Q Consensus       124 ~~~~~~ll~~~l~~~~--------------------~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~R  183 (273)
                      .+.+...|.... .+.                    ......+|+||.+.... .. +..  .+|++|+|+++++++++|
T Consensus        93 ~~~l~~~L~~l~-~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~-~~-~~~--~~d~vi~l~~~~e~~~~R  167 (252)
T 1uj2_A           93 NELILKTLKEIT-EGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYS-QE-VRD--LFQMKLFVDTDADTRLSR  167 (252)
T ss_dssp             HHHHHHHHHHHH-TTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSS-HH-HHH--HCSEEEEEECCHHHHHHH
T ss_pred             HHHHHHHHHHHH-cCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccC-HH-HHH--hcCeeEEEeCCHHHHHHH
Confidence            122334443322 110                    01245799999664211 11 221  257999999999999999


Q ss_pred             HhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHHH-hhH-HHHHHHHhcCcEE--EEeCCCChhHHHHHHHHHHHh
Q 024067          184 NLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAE-QGK-SLEDYYSKQRKLL--NFQVAAAPGETWQGLLSALHL  259 (273)
Q Consensus       184 l~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~-~~~-~l~~~y~~~~~~~--~id~~~s~~ev~~~I~~~l~~  259 (273)
                      +..|....             + ..+.+.+.+++..... ... .+..++...+.++  .+|++.++++++++|...+..
T Consensus       168 ~~~R~~~~-------------r-g~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~id~~~s~e~v~~~I~~~l~~  233 (252)
T 1uj2_A          168 RVLRDISE-------------R-GRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHIQDILNG  233 (252)
T ss_dssp             HHHHHHHH-------------S-CCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEETGGGCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhh-------------h-CCCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEecCCCChhHHHHHHHHHHHHHcc
Confidence            98774100             0 1124445555443111 001 0111222233333  248778999999999999875


Q ss_pred             c
Q 024067          260 Q  260 (273)
Q Consensus       260 ~  260 (273)
                      .
T Consensus       234 ~  234 (252)
T 1uj2_A          234 G  234 (252)
T ss_dssp             -
T ss_pred             c
Confidence            4

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=99.44  E-value=1.3e-13  Score=115.84  Aligned_cols=167  Identities=12%  Similarity=0.089  Sum_probs=101.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh-CCCeechhHHHHHHccCCChHHHHHHHHHHCCC-------CCCHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQELSPRSALYKQIANAVNEGK-------LVPEDVIFALLS  132 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~-g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~-------~~~~~~~~~ll~  132 (273)
                      .++.+|.|+|+|||||||+++.|++.+ ++.+++.|++++....-  ..       ...+.       .+........+.
T Consensus        19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~--~~-------~~~~~~~~~~~~~~~~~~l~~~i~   89 (207)
T 2qt1_A           19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEI--ET-------DKNGFLQYDVLEALNMEKMMSAIS   89 (207)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGS--CB-------CTTSCBCCSSGGGBCHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHh--hc-------cccCCChhHHHHHhHHHHHHHHHH
Confidence            356789999999999999999999999 89999999887532110  00       00000       011122223332


Q ss_pred             HHHHhc---c-------cCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCC
Q 024067          133 KRLEEG---Y-------YRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGA  202 (273)
Q Consensus       133 ~~l~~~---~-------~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~  202 (273)
                      ..+...   .       ......+|+||++.-..  +.+  ...+|.+|+++++.+++.+|+..|....           
T Consensus        90 ~~l~~~~~~~~~~~~~~~~~~~~vi~eg~~~~~~--~~~--~~~~d~~i~l~~~~~~~~~R~~~R~~~~-----------  154 (207)
T 2qt1_A           90 CWMESARHSVVSTDQESAEEIPILIIEGFLLFNY--KPL--DTIWNRSYFLTIPYEECKRRRSTRVYQP-----------  154 (207)
T ss_dssp             HHHHHHTTSSCCC-----CCCCEEEEECTTCTTC--GGG--TTTCSEEEEEECCHHHHHHHHHHSCCSS-----------
T ss_pred             HHHhCCCCCCcCCCeeecCCCCEEEEeehHHcCc--HHH--HHhcCeeEEEECCHHHHHHHHHHcCCCc-----------
Confidence            222210   0       01245789999754311  111  1357899999999999999997775211           


Q ss_pred             CCCCCCcHHHHH-HHHHHHHHhhHHHHHHHHhc-CcEEEEeCCCChhHHHHHHHHHHHh
Q 024067          203 RFSAADAASAWK-EKFRIYAEQGKSLEDYYSKQ-RKLLNFQVAAAPGETWQGLLSALHL  259 (273)
Q Consensus       203 ~~~~~d~~e~~~-~rl~~y~~~~~~l~~~y~~~-~~~~~id~~~s~~ev~~~I~~~l~~  259 (273)
                          ++..+.+. .....|.    ...+.|.+. +.++.||+++++++++++|.+.+..
T Consensus       155 ----e~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~Id~~~~~eev~~~I~~~l~~  205 (207)
T 2qt1_A          155 ----PDSPGYFDGHVWPMYL----KYRQEMQDITWEVVYLDGTKSEEDLFLQVYEDLIQ  205 (207)
T ss_dssp             ----CCCTTHHHHTHHHHHH----HHHHHGGGCSSCCEEEETTSCHHHHHHHHHHHHTT
T ss_pred             ----cchHHHHHHHHhHHHH----HHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHHh
Confidence                11111222 1222332    233445443 5678899999999999999998864

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=99.41  E-value=5.1e-13  Score=112.83  Aligned_cols=163  Identities=12%  Similarity=0.052  Sum_probs=92.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC------CCeechhHHHHHHccCCChHH-HHHHHHHHCCCCCCHHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE------VPHISMGSLVRQELSPRSALY-KQIANAVNEGKLVPEDVIFALLSK  133 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g------~~~is~~dllr~~~~~~~~~g-~~i~~~l~~g~~~~~~~~~~ll~~  133 (273)
                      .++..|+|+|+|||||||+++.|++.++      +.+++.+. ++..+.....+. ..-...+        ..+...+..
T Consensus        23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~-~r~~l~~~~~~~~~~r~~~~--------~~~~~~~~~   93 (211)
T 1m7g_A           23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN-IRFGLNKDLGFSEADRNENI--------RRIAEVAKL   93 (211)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH-HTTTTTTTCCSSHHHHHHHH--------HHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH-HhhhhccccCCCHHHHHHHH--------HHHHHHHHH
Confidence            3578999999999999999999999886      77787543 443332110000 0000000        001122223


Q ss_pred             HHHhcccCCcceEEEeCCCCC-HHHHHHHHh----------hCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCC
Q 024067          134 RLEEGYYRGESGFILDGIPRT-RIQAEILDQ----------IVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGA  202 (273)
Q Consensus       134 ~l~~~~~~~~~g~IlDg~P~~-~~qa~~l~~----------~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~  202 (273)
                      .+..     +..+|+| ++.. ....+.+..          ...|+++|+|+||++++.+|+ .|.              
T Consensus        94 ~l~~-----g~~VI~d-~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~-~r~--------------  152 (211)
T 1m7g_A           94 FADS-----NSIAITS-FISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRD-PKG--------------  152 (211)
T ss_dssp             HHHT-----TCEEEEE-CCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC-TTC--------------
T ss_pred             HHHC-----CCEEEEe-cCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhh-hHH--------------
Confidence            3332     3568888 5431 122333322          125689999999999999985 221              


Q ss_pred             CCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhc-CcEEEEeCCC-ChhHHHHHHHHHHHhcCC
Q 024067          203 RFSAADAASAWKEKFRIYAEQGKSLEDYYSKQ-RKLLNFQVAA-APGETWQGLLSALHLQHM  262 (273)
Q Consensus       203 ~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~-~~~~~id~~~-s~~ev~~~I~~~l~~~~~  262 (273)
                               .+.+....|......+..+|+.. ...+.||++. +++++.++|...+..++.
T Consensus       153 ---------~~~~~r~~~~~~~~~~~~~y~~~~~~~~~IDt~~~s~eev~~~I~~~l~~~~~  205 (211)
T 1m7g_A          153 ---------LYKKAREGVIKEFTGISAPYEAPANPEVHVKNYELPVQDAVKQIIDYLDTKGY  205 (211)
T ss_dssp             ---------HHHHHHHTSSSSCBTTTBCCCCCSSCSEEEECSSSCHHHHHHHHHHHHHHTTC
T ss_pred             ---------HHHHHHhcchhhhhhhhhhccCCCCCeEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence                     11111111111111122234321 2247899998 999999999999987653

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=99.39  E-value=1.7e-11  Score=103.23  Aligned_cols=168  Identities=12%  Similarity=0.082  Sum_probs=92.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHH-HHHHHHHHCCC-CC------------CHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALY-KQIANAVNEGK-LV------------PEDVIF  128 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g-~~i~~~l~~g~-~~------------~~~~~~  128 (273)
                      .+.|.|.|++||||||+++.||+++|+++++ +++++..... ..+. +.+...-+... ..            ..+.+.
T Consensus         6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~-~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~   83 (201)
T 3fdi_A            6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKD-GRYSKEVLERFDEKPMNFAFIPVPAGGTTISLEQDIA   83 (201)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC----------------------------------CHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHh-cCCCHHHHHHHhhhchhHHHHHhccccccccccHHHH
Confidence            3589999999999999999999999999999 8888753221 1111 11111111100 00            001111


Q ss_pred             HHHHHHHHhcccC--CcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCC
Q 024067          129 ALLSKRLEEGYYR--GESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSA  206 (273)
Q Consensus       129 ~ll~~~l~~~~~~--~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~  206 (273)
                      ....+.+..-  .  ...++|++|--.+    ..|.. ..-.++|||++|.+++.+|+..+..-                
T Consensus        84 ~~~~~~i~~l--a~~~~~~~Vi~Gr~g~----~vl~~-~~~~~~V~L~A~~e~r~~R~~~~~~~----------------  140 (201)
T 3fdi_A           84 IRQFNFIRKK--ANEEKESFVIVGRCAE----EILSD-NPNMISAFILGDKDTKTKRVMEREGV----------------  140 (201)
T ss_dssp             HHHHHHHHHH--HHTSCCCEEEESTTHH----HHTTT-CTTEEEEEEEECHHHHHHHHHHHHTC----------------
T ss_pred             HHHHHHHHHH--HhhcCCCEEEEECCcc----hhcCC-CCCeEEEEEECCHHHHHHHHHHHhCC----------------
Confidence            2222322221  1  2367899875211    11211 11248999999999999999765310                


Q ss_pred             CCcHHHHHHHHHHHHHhhHHHHHHHHhc---------CcEEEEeCC-CChhHHHHHHHHHHHhc
Q 024067          207 ADAASAWKEKFRIYAEQGKSLEDYYSKQ---------RKLLNFQVA-AAPGETWQGLLSALHLQ  260 (273)
Q Consensus       207 ~d~~e~~~~rl~~y~~~~~~l~~~y~~~---------~~~~~id~~-~s~~ev~~~I~~~l~~~  260 (273)
                        +.+...+++..-.+.   -..||+..         ..-+.||++ .+++++.+.|...+..+
T Consensus       141 --~~~~~~~~i~~~d~~---R~~~y~~~~~~~~~~~~~~dl~Idt~~l~~eevv~~I~~~i~~~  199 (201)
T 3fdi_A          141 --DEKTALNMMKKMDKM---RKVYHNFYCESKWGDSRTYDICIKIGKVDVDTATDMIIKYIDSR  199 (201)
T ss_dssp             --CHHHHHHHHHHHHHH---HHHHHHHHCSSCTTBGGGCSEEEEESSSCHHHHHHHHHHHHHTC
T ss_pred             --CHHHHHHHHHHHHHH---HHHHHHHHhCCCCCCcccCCEEEECCCCCHHHHHHHHHHHHHHh
Confidence              122344444332222   22344331         112567766 48999999999998754

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=99.39  E-value=2.4e-13  Score=118.67  Aligned_cols=84  Identities=12%  Similarity=0.109  Sum_probs=51.1

Q ss_pred             CCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHh--hHHHHHHHHhcCcEEEEeCC
Q 024067          166 DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQ--GKSLEDYYSKQRKLLNFQVA  243 (273)
Q Consensus       166 ~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~~--~~~l~~~y~~~~~~~~id~~  243 (273)
                      .||++|+|+++++++++|+.+|....      ..    ....+..+.+.+++..|.+.  ..+...+|.+ ..++.||++
T Consensus       174 ~pd~vi~L~~~~e~~~~Ri~~R~r~~------~~----~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~-~~~~~Id~~  242 (263)
T 1p5z_B          174 ELDGIIYLQATPETCLHRIYLRGRNE------EQ----GIPLEYLEKLHYKHESWLLHRTLKTNFDYLQE-VPILTLDVN  242 (263)
T ss_dssp             CCSEEEEEECCHHHHHHHHHHHCCGG------GT----TCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGG-SCEEEEECC
T ss_pred             CCCeEEEEECCHHHHHHHHHhcCCcc------cc----CccHHHHHHHHHHHHHHHhhccchhhhhhhcc-CCEEEEECC
Confidence            69999999999999999998764210      00    00111122333333333221  0111111223 458999999


Q ss_pred             CChhHHHHHHHHHHHhc
Q 024067          244 AAPGETWQGLLSALHLQ  260 (273)
Q Consensus       244 ~s~~ev~~~I~~~l~~~  260 (273)
                      +++++|+++|...|...
T Consensus       243 ~~~eev~~~I~~~l~~~  259 (263)
T 1p5z_B          243 EDFKDKYESLVEKVKEF  259 (263)
T ss_dssp             SCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            99999999999998653

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=99.37  E-value=3.2e-11  Score=103.22  Aligned_cols=171  Identities=15%  Similarity=0.192  Sum_probs=95.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCC-Ch------HHHHHHH-HH---HCC------------
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPR-SA------LYKQIAN-AV---NEG------------  119 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~-~~------~g~~i~~-~l---~~g------------  119 (273)
                      .+.|.|.|++||||||+++.||+++|+++++ ++++++..... -+      .++.... .+   ..+            
T Consensus        14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d-~~~~~~~a~~~g~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~   92 (223)
T 3hdt_A           14 NLIITIEREYGSGGRIVGKKLAEELGIHFYD-DDILKLASEKSAVGEQFFRLADEKAGNNLLYRLGGGRKIDLHSKPSPN   92 (223)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHTCEEEC-HHHHHHHHHCC-------------------------------------
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc-HHHHHHHHHHcCCCHHHHHHHHhhccccHHHHHhcccccccccccccc
Confidence            5789999999999999999999999999999 67776543221 11      1111100 00   000            


Q ss_pred             -CCCCHHHHHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHH--hhCCCceEEEEccCHHHHHHHHhcCCcCCCcccc
Q 024067          120 -KLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILD--QIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEF  196 (273)
Q Consensus       120 -~~~~~~~~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~--~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~  196 (273)
                       ....++.+.....+.+.+.  ....++|++|.-..    ..|.  .-..-.++|+|++|.+++.+|+..+...      
T Consensus        93 ~~~~~~~~~f~~~~~~i~~l--a~~~~~Vi~Grggg----~vl~~~~~~~~~~~VfL~A~~e~r~~Ri~~~~~~------  160 (223)
T 3hdt_A           93 DKLTSPENLFKFQSEVMREL--AESEPCIFVGRAAG----YVLDQDEDIERLIRIFVYTDKVKKVQRVMEVDCI------  160 (223)
T ss_dssp             -----HHHHHHHHHHHHHHH--HHHSCEEEESTTHH----HHHHHCTTCCEEEEEEEECCHHHHHHHHHHHHTC------
T ss_pred             cccccHHHHHHHHHHHHHHH--HhCCCEEEEeCCcc----hhcccccCCCCeEEEEEECCHHHHHHHHHHhcCC------
Confidence             0011222223223333221  11356888865311    1221  1111248999999999999999765321      


Q ss_pred             cccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHH--------hcCcEEEEeCC-CChhHHHHHHHHHHHhc
Q 024067          197 LRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYS--------KQRKLLNFQVA-AAPGETWQGLLSALHLQ  260 (273)
Q Consensus       197 y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~--------~~~~~~~id~~-~s~~ev~~~I~~~l~~~  260 (273)
                                  +.+...+++....+...+.-.+|.        ..+  +.||++ .+++++.+.|...+..+
T Consensus       161 ------------~~~~a~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~d--l~IdT~~l~~eevv~~I~~~i~~~  219 (223)
T 3hdt_A          161 ------------DEERAKRRIKKIEKERKEYYKYFTGSEWHSMKNYD--LPINTTKLTLEETAELIKAYIRLK  219 (223)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHHHHHHHSSCTTCGGGCS--EEEECTTCCHHHHHHHHHHHHHHT
T ss_pred             ------------CHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCe--EEEECCCCCHHHHHHHHHHHHHHh
Confidence                        123344444443333333322221        222  567876 48999999999999865

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=99.35  E-value=4.6e-12  Score=106.03  Aligned_cols=154  Identities=14%  Similarity=0.168  Sum_probs=89.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCC----CCCCHH------------
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEG----KLVPED------------  125 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g----~~~~~~------------  125 (273)
                      ....|.|+|++||||||+++.|++.+|+++|++|++.++...+   ..+.+.+.+...    ..+...            
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~---~~~~i~~~fG~~~~~~g~ldr~~L~~~vF~~~~~   87 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEE---VKEKLVELFGGSVLEDGKVNRKKLAGIVFESREN   87 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHH---THHHHHHHHCGGGBSSSSBCHHHHHHHHTTCHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHH---HHHHHHHHhChhhcCCCCcCHHHHHHHHhCCHHH
Confidence            3568899999999999999999999999999999999876543   222333333211    011111            


Q ss_pred             ------HHHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCccccccc
Q 024067          126 ------VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRL  199 (273)
Q Consensus       126 ------~~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~  199 (273)
                            +....+...+..........+|+|+ |...+.  .+.  ..+|.+|+++||+++.++|+...            
T Consensus        88 ~~~l~~i~hP~i~~~~~~~~~~~~~~vv~d~-pll~e~--~~~--~~~d~vi~v~a~~e~r~~Rli~~------------  150 (192)
T 2grj_A           88 LKKLELLVHPLMKKRVQEIINKTSGLIVIEA-ALLKRM--GLD--QLCDHVITVVASRETILKRNREA------------  150 (192)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCEEEEEEC-TTTTTT--TGG--GGCSEEEEEECCHHHHHHHCSSH------------
T ss_pred             HHHHHhhhCHHHHHHHHHHHHHcCCEEEEEE-eceeec--ChH--HhCCEEEEEECCHHHHHHHHHHh------------
Confidence                  1111121212110001124567774 533332  122  24689999999999999998211            


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067          200 GGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL  259 (273)
Q Consensus       200 ~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~  259 (273)
                                      ++..|.      .+..+..+  +.|+++++++++.++|...+..
T Consensus       151 ----------------q~~~~~------~~~~~~AD--~vI~n~~~~~~l~~~v~~~~~~  186 (192)
T 2grj_A          151 ----------------DRRLKF------QEDIVPQG--IVVANNSTLEDLEKKVEEVMKL  186 (192)
T ss_dssp             ----------------HHHHTT------CTTCCCCS--EEEECSSCHHHHHHHHHHHHHH
T ss_pred             ----------------cCCchh------hhHHhcCC--EEEECCCCHHHHHHHHHHHHHH
Confidence                            011100      01111122  4577788999999999887754

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=99.34  E-value=1.1e-11  Score=101.22  Aligned_cols=159  Identities=10%  Similarity=0.020  Sum_probs=85.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCee--chhHHHHHHccCCChHHHHHHH--HHHCCCCC-CH---HHHH---HHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHI--SMGSLVRQELSPRSALYKQIAN--AVNEGKLV-PE---DVIF---ALL  131 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~i--s~~dllr~~~~~~~~~g~~i~~--~l~~g~~~-~~---~~~~---~ll  131 (273)
                      ++.|+|+|+|||||||+++.|+++++.+++  ++|++... ..+.  .+.....  +-..+... ..   ....   ..+
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEA-MPLK--MQSAEGGIEFDADGGVSIGPEFRALEGAWAEGV   79 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHH-SCGG--GGTSTTSEEECTTSCEEECHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhh-cchh--hccchhhccccCCCccccchhHHHHHHHHHHHH
Confidence            468999999999999999999999987665  47666543 2221  0000000  00000000 01   1111   112


Q ss_pred             HHHHHhcccCCcceEEEeCCCC-CHHH-HHHHHhhCC-CceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCC
Q 024067          132 SKRLEEGYYRGESGFILDGIPR-TRIQ-AEILDQIVD-VDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAAD  208 (273)
Q Consensus       132 ~~~l~~~~~~~~~g~IlDg~P~-~~~q-a~~l~~~~~-~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d  208 (273)
                      ...+.     .+..+|+|+... .... ....+.+.. +..+|+|+|+.+++.+|+..|...+               ..
T Consensus        80 ~~~~~-----~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~r~~~~---------------~~  139 (178)
T 1qhx_A           80 VAMAR-----AGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARGDRV---------------AG  139 (178)
T ss_dssp             HHHHH-----TTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTSSSC---------------TT
T ss_pred             HHHHh-----cCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECCHHHHHHHHHhhCCcc---------------cc
Confidence            22222     235789998543 2221 122222222 3468889999999999998876321               11


Q ss_pred             cHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCC-ChhHHHHHHHHHH
Q 024067          209 AASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAA-APGETWQGLLSAL  257 (273)
Q Consensus       209 ~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~-s~~ev~~~I~~~l  257 (273)
                         ....+   +    ..+.. |..  .-+.||++. +++++.+.|.+.|
T Consensus       140 ---~~~~~---~----~~~~~-~~~--~d~~idt~~~~~~~~~~~I~~~l  176 (178)
T 1qhx_A          140 ---MAAKQ---A----YVVHE-GVE--YDVEVDTTHKESIECAWAIAAHV  176 (178)
T ss_dssp             ---HHHHH---T----TGGGT-TCC--CSEEEETTSSCHHHHHHHHHTTC
T ss_pred             ---hhhhh---c----hhhcc-CCC--CcEEEECCCCCHHHHHHHHHHHh
Confidence               11111   1    11111 222  236788775 8999999988654

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=99.33  E-value=1.5e-11  Score=106.96  Aligned_cols=179  Identities=14%  Similarity=0.103  Sum_probs=95.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHc----cCC-----ChHHHHHHHHH--------------HC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL----SPR-----SALYKQIANAV--------------NE  118 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~----~~~-----~~~g~~i~~~l--------------~~  118 (273)
                      ++..|.|+||+||||||+++.|++++|+.+++.|.+++...    ..+     ...-..+...+              -.
T Consensus        26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  105 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVILE  105 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEET
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEEC
Confidence            56789999999999999999999999999999999985432    111     01011111100              00


Q ss_pred             CCCCCH-----------------HHHHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHH
Q 024067          119 GKLVPE-----------------DVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLV  181 (273)
Q Consensus       119 g~~~~~-----------------~~~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~  181 (273)
                      +..+.+                 ..+...+.+.....  ....++|+||--....      -+...+++|||+++.+++.
T Consensus       106 ~~~v~~~i~~~~v~~~~s~~~~~~~vr~~l~~~~~~~--a~~~~~V~~gr~~~~~------v~~~~~~~ifl~A~~e~r~  177 (252)
T 4e22_A          106 GEDVSNEIRTETVGNTASQAAAFPRVREALLRRQRAF--REAPGLIADGRDMGTI------VFPDAPVKIFLDASSQERA  177 (252)
T ss_dssp             TEECTTGGGSHHHHHHHHHHTTSHHHHHHHHHHHHTT--CCSSCEEEEESSCCCC------CSTTCSEEEEEECCHHHHH
T ss_pred             CeehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH--hhCCCEEEEeceecee------ecCCCCEEEEEECCHHHHH
Confidence            001111                 11122222222221  2357899987311100      0123579999999999999


Q ss_pred             HHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHH--HHHhhHHHHHHHHhcCcEEEEeCCC-ChhHHHHHHHHHHH
Q 024067          182 KRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRI--YAEQGKSLEDYYSKQRKLLNFQVAA-APGETWQGLLSALH  258 (273)
Q Consensus       182 ~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~--y~~~~~~l~~~y~~~~~~~~id~~~-s~~ev~~~I~~~l~  258 (273)
                      +|...+....             +...+.+.+.+++..  ..+....+.. |......+.||++. +++++.+.|...+.
T Consensus       178 ~R~~~~l~~~-------------~~~~~~~~~~~~i~~rd~~~~~r~~~p-l~~~~d~~~Idts~~~~eev~~~I~~~i~  243 (252)
T 4e22_A          178 HRRMLQLQER-------------GFNVNFERLLAEIQERDNRDRNRSVAP-LVPAADALVLDSTSMSIEQVIEQALAYAQ  243 (252)
T ss_dssp             HHHHHHHHHH-------------TCCCCHHHHHHHHC------------C-CCCCTTEEEEECSSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhc-------------CCCCCHHHHHHHHHHHHHHhhhccccc-hhccCCeEEEECcCCCHHHHHHHHHHHHH
Confidence            9975421000             001122333333311  1111111111 11111246788776 89999999999998


Q ss_pred             hcCC
Q 024067          259 LQHM  262 (273)
Q Consensus       259 ~~~~  262 (273)
                      ....
T Consensus       244 ~~~~  247 (252)
T 4e22_A          244 RILA  247 (252)
T ss_dssp             HHCC
T ss_pred             HHhh
Confidence            7653

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=99.31  E-value=7.7e-12  Score=103.21  Aligned_cols=155  Identities=17%  Similarity=0.173  Sum_probs=86.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC-----CCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHH----HHHHH--
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPED----VIFAL--  130 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g-----~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~----~~~~l--  130 (273)
                      ++..|+|+|+|||||||+++.|++.++     +.+++.+. ++..+.+..              .....    .+..+  
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~-~~~~~~~~~--------------~~~~~~r~~~~~~~~~   76 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW-ARTTVSEGA--------------GFTREERLRHLKRIAW   76 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH-HHTTTTTTC--------------CCCHHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH-HHHHHhhcc--------------CCChhhHHHHHHHHHH
Confidence            678999999999999999999999885     34566544 444332211              11111    11111  


Q ss_pred             HHHHHHhcccCCcceEEEeCCCCCHHHHHHHH----hhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCC
Q 024067          131 LSKRLEEGYYRGESGFILDGIPRTRIQAEILD----QIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSA  206 (273)
Q Consensus       131 l~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~----~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~  206 (273)
                      +...+..    .+..+|+|++.......+.+.    ....|+++|+|++|++++.+|+..+....               
T Consensus        77 ~~~~~~~----~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~~~~~~---------------  137 (186)
T 2yvu_A           77 IARLLAR----NGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPKGLYKK---------------  137 (186)
T ss_dssp             HHHHHHT----TTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHHHHHHH---------------
T ss_pred             HHHHHHh----CCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhhhhhhH---------------
Confidence            1111111    234567788654433333332    22357899999999999999974321000               


Q ss_pred             CCcHHHHHHHHHHHHHhhHHHHHHHHh-cCcEEEEeCC-CChhHHHHHHHHHHHh
Q 024067          207 ADAASAWKEKFRIYAEQGKSLEDYYSK-QRKLLNFQVA-AAPGETWQGLLSALHL  259 (273)
Q Consensus       207 ~d~~e~~~~rl~~y~~~~~~l~~~y~~-~~~~~~id~~-~s~~ev~~~I~~~l~~  259 (273)
                           .-...+..+.    .+.+.|.. ....+.||++ .+++++.++|...+..
T Consensus       138 -----~~~~~~~~~~----~~~~~y~~~~~~~~~Id~~~~~~~ev~~~I~~~l~~  183 (186)
T 2yvu_A          138 -----ALKGELENFT----GITDPYEPPENPQLVLDTESNTIEHNVSYLYSLVKA  183 (186)
T ss_dssp             -----HHTTCCSSCH----HHHSCCCCCSSCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred             -----Hhhcchhhhh----hhhhcccCCCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence                 0000000000    01112331 1235789987 7999999999998864

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=99.29  E-value=2e-12  Score=112.38  Aligned_cols=120  Identities=13%  Similarity=0.058  Sum_probs=72.0

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhC--CCeechhHHHHHHccCC----ChHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSKLLE--VPHISMGSLVRQELSPR----SALYKQIANAVNEGKLVPEDVIFALLSK  133 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~g--~~~is~~dllr~~~~~~----~~~g~~i~~~l~~g~~~~~~~~~~ll~~  133 (273)
                      ..+|..|+|+|+|||||||+++.|++.++  +.+++.|. +++.....    ...|..+.++...   .....+..++..
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~-~r~~~~~~~~i~~~~g~~~~~~~~~---~~~~~~~~~~~~  104 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDS-FRSQHPHYLELQQEYGKDSVEYTKD---FAGKMVESLVTK  104 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGG-GGTTSTTHHHHHTTCSSTTHHHHHH---HHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHH-HHHhchhHHHHHHHcCchHHHHhhH---HHHHHHHHHHHH
Confidence            34678999999999999999999999997  45666654 44332210    0011111111110   001122233333


Q ss_pred             HHHhcccCCcceEEEeCCCCCHHHHHHHHh----hCCCceEEEEccCHHHHHHHHhcCC
Q 024067          134 RLEEGYYRGESGFILDGIPRTRIQAEILDQ----IVDVDLVINFKSIEDQLVKRNLESE  188 (273)
Q Consensus       134 ~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~----~~~~d~vI~L~~~~e~l~~Rl~~R~  188 (273)
                      .+..     +.+||+|+++++..+...+..    .+.+-.++++++|.+++.+|+.+|.
T Consensus       105 ~~~~-----g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R~  158 (253)
T 2p5t_B          105 LSSL-----GYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIRY  158 (253)
T ss_dssp             HHHT-----TCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHHH
T ss_pred             HHhc-----CCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHHH
Confidence            2322     358999999998776544432    2233346788999999999998774

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=99.27  E-value=6.7e-11  Score=104.84  Aligned_cols=120  Identities=12%  Similarity=0.049  Sum_probs=75.2

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHh--CCCeechhHHHHHHccCCChHHHHHHHHHHCC----CCCCHHHHHHHHHH
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSKLL--EVPHISMGSLVRQELSPRSALYKQIANAVNEG----KLVPEDVIFALLSK  133 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~--g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g----~~~~~~~~~~ll~~  133 (273)
                      ..+|..|+|+|||||||||+++.|++++  ++.+||.| .++.....   ....+..+....    ......+....+..
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D-~~R~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~  105 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDND-TFKQQHPN---FDELVKLYEKDVVKHVTPYSNRMTEAIISR  105 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTH-HHHTTSTT---HHHHHHHHGGGCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEech-HhHHhchh---hHHHHHHccchhhhhhhHHHHHHHHHHHHH
Confidence            3467899999999999999999999999  78899974 45543322   111111111000    00111223344444


Q ss_pred             HHHhcccCCcceEEEeCCCCCHHHHHHHH----hhCCCceEEEEccCHHHH----HHHHhcCC
Q 024067          134 RLEEGYYRGESGFILDGIPRTRIQAEILD----QIVDVDLVINFKSIEDQL----VKRNLESE  188 (273)
Q Consensus       134 ~l~~~~~~~~~g~IlDg~P~~~~qa~~l~----~~~~~d~vI~L~~~~e~l----~~Rl~~R~  188 (273)
                      .+..     +..+|+|+.+.+..+...+.    ..+.+..+++|.+|++++    .+|+..|.
T Consensus       106 ~l~~-----g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~  163 (287)
T 1gvn_B          106 LSDQ-----GYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMY  163 (287)
T ss_dssp             HHHH-----TCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHHH
T ss_pred             HHhc-----CCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHHH
Confidence            4443     46799999998876554432    222344579999999999    88886553

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=99.27  E-value=3.5e-11  Score=112.07  Aligned_cols=100  Identities=15%  Similarity=0.053  Sum_probs=75.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccc
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY  140 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~  140 (273)
                      ..+..|+|+|+|||||||+++.|++.+++.+|+.|++-        .+                ......+...+..   
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~--------~~----------------~~~~~~~~~~l~~---  308 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG--------SW----------------QRCVSSCQAALRQ---  308 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSC--------SH----------------HHHHHHHHHHHHT---
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHH--------HH----------------HHHHHHHHHHHhc---
Confidence            35678999999999999999999999999999998751        01                1122333444443   


Q ss_pred             CCcceEEEeCCCCCHHHHHHHHh----hCCCceEEEEccCHHHHHHHHhcCCc
Q 024067          141 RGESGFILDGIPRTRIQAEILDQ----IVDVDLVINFKSIEDQLVKRNLESEA  189 (273)
Q Consensus       141 ~~~~g~IlDg~P~~~~qa~~l~~----~~~~d~vI~L~~~~e~l~~Rl~~R~~  189 (273)
                        +..+|+|+.+.+..+...+..    ...+..+|+|+++.+++++|+..|..
T Consensus       309 --g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~  359 (416)
T 3zvl_A          309 --GKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREM  359 (416)
T ss_dssp             --TCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHH
T ss_pred             --CCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcc
Confidence              467999999888777665533    23455799999999999999998864

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=99.22  E-value=3.8e-11  Score=98.36  Aligned_cols=112  Identities=14%  Similarity=0.145  Sum_probs=61.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh---CCCeechh-HHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHH--HH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVPHISMG-SLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLS--KR  134 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~---g~~~is~~-dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~--~~  134 (273)
                      .++..|+|+|++||||||+++.|++.+   |++++.++ +.+++.+.....+...          ..++.+.++..  ..
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~   72 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPE----------DREENVRRIAEVAKL   72 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHH----------HHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhccccccc----------cHHHHHHHHHHHHHH
Confidence            357899999999999999999999998   98887553 3343322111000000          00111222211  11


Q ss_pred             HHhcccCCcceEEEeCCCCC-H---HHHHHH-HhhCCCceEEEEccCHHHHHHHHhcC
Q 024067          135 LEEGYYRGESGFILDGIPRT-R---IQAEIL-DQIVDVDLVINFKSIEDQLVKRNLES  187 (273)
Q Consensus       135 l~~~~~~~~~g~IlDg~P~~-~---~qa~~l-~~~~~~d~vI~L~~~~e~l~~Rl~~R  187 (273)
                      +..    . ..+++.++... .   .....+ .....|+++|+|+||++++.+|+..+
T Consensus        73 ~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~  125 (179)
T 2pez_A           73 FAD----A-GLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKG  125 (179)
T ss_dssp             HHH----T-TCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTS
T ss_pred             HHH----C-CCEEEEecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhh
Confidence            211    1 12344333222 1   111112 22346889999999999999998654

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=99.22  E-value=6.5e-10  Score=92.79  Aligned_cols=152  Identities=13%  Similarity=0.055  Sum_probs=88.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh---CCC--eechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHH------
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVP--HISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFA------  129 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~---g~~--~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~------  129 (273)
                      .++..|+|+|++||||||+++.|++.+   |..  +++.+++. ..+..              +..+..+....      
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~-~~~~~--------------~~~~~~~~~~~~~~~~~   87 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVR-HGLNR--------------DLSFKAEDRAENIRRVG   87 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT-TTTTT--------------TCCSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhh-hHhhc--------------ccCcChHHHHHHHHHHH
Confidence            357899999999999999999999998   665  88876543 22221              11111111111      


Q ss_pred             HHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCC--CceEEEEccCHHHHHHHH------hcCCcCCCcccccccCC
Q 024067          130 LLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD--VDLVINFKSIEDQLVKRN------LESEAFSPHKEFLRLGG  201 (273)
Q Consensus       130 ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~--~d~vI~L~~~~e~l~~Rl------~~R~~~~~~~~~y~~~~  201 (273)
                      .+...+..    .+..+|++.........+.+.....  ...+|+|+++.+++.+|+      ..|..+.          
T Consensus        88 ~~~~~~~~----~~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~~~~l~~~~r~~~~----------  153 (200)
T 3uie_A           88 EVAKLFAD----AGIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARDPKGLYKLARAGKI----------  153 (200)
T ss_dssp             HHHHHHHH----TTCEEEEECCCCCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHCTTSHHHHHHTTSS----------
T ss_pred             HHHHHHHh----CCceEEEecCCchHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhcccchHHHHhcCCC----------
Confidence            11111222    2355666665444455555554433  345799999999999997      2222111          


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhc-CcEEEEeCC--CChhHHHHHHHHHHHhcC
Q 024067          202 ARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQ-RKLLNFQVA--AAPGETWQGLLSALHLQH  261 (273)
Q Consensus       202 ~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~-~~~~~id~~--~s~~ev~~~I~~~l~~~~  261 (273)
                      ..  ...    +.              ..|... .--+.||++  .+++++.+.|...|....
T Consensus       154 ~~--~~~----~~--------------~~~~~~~~~~~~idt~~~~~~~e~v~~i~~~l~~~~  196 (200)
T 3uie_A          154 KG--FTG----ID--------------DPYEPPLNCEISLGREGGTSPIEMAEKVVGYLDNKG  196 (200)
T ss_dssp             CS--CBT----TT--------------BCCCCCSSCSEEECCSSCCCHHHHHHHHHHHHHHHT
T ss_pred             CC--CCC----CC--------------CcCcCCCCCCEEEecCCCCCHHHHHHHHHHHHHHcC
Confidence            00  000    00              012211 123667876  499999999999997764

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=99.21  E-value=1.3e-10  Score=100.04  Aligned_cols=177  Identities=14%  Similarity=0.137  Sum_probs=94.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHc----cCCCh--HHHHHHHHHHC-----------------
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL----SPRSA--LYKQIANAVNE-----------------  118 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~----~~~~~--~g~~i~~~l~~-----------------  118 (273)
                      +++.|+|.|||||||||+++.|++++|+++++.|.+++...    ..+-+  -.+.+.+...+                 
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~   87 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLA   87 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEET
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEEC
Confidence            56789999999999999999999999999999999987632    11110  01122222221                 


Q ss_pred             CCCCCH-----HH------------HHHHHHHHHHhcccCCc-ceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHH
Q 024067          119 GKLVPE-----DV------------IFALLSKRLEEGYYRGE-SGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQL  180 (273)
Q Consensus       119 g~~~~~-----~~------------~~~ll~~~l~~~~~~~~-~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l  180 (273)
                      |..+.+     ++            +...+.+.....  ... .++|+||-.....      -+...++-|||+++.++.
T Consensus        88 g~~v~~~ir~~~v~~~~s~va~~~~vr~~l~~~qr~~--a~~~~~~V~~GRd~gt~------V~pda~lkifl~A~~e~R  159 (233)
T 3r20_A           88 GEDVSSEIRGDAVTGAVSAVSAVPAVRTRLVDIQRKL--ATEGGRVVVEGRDIGTV------VLPDADVKIFLTASAEER  159 (233)
T ss_dssp             TEECTTGGGSHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTSSSCEEEEESSCCCC------CCTTCSEEEEEECCHHHH
T ss_pred             CeehhhhhcchHHHHHHHHHhcchHHHHHHHHHHHHH--HHhcCcEEEecccceeE------EcCCCCEEEEEECCHHHH
Confidence            111111     11            111111111111  123 6788887321100      001346899999999999


Q ss_pred             HHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHH---hcCcEEEEeCCC-ChhHHHHHHHHH
Q 024067          181 VKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYS---KQRKLLNFQVAA-APGETWQGLLSA  256 (273)
Q Consensus       181 ~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~---~~~~~~~id~~~-s~~ev~~~I~~~  256 (273)
                      .+|...+....             ...-+.+.+.+.+......-..  .|..   .....+.||++. +++++.+.|...
T Consensus       160 a~Rr~~~l~~~-------------~~~~~~~~~~~~i~~rD~~d~~--r~~~pl~~~~dal~IDTs~l~iee~v~~I~~~  224 (233)
T 3r20_A          160 ARRRNAQNVAN-------------GLPDDYATVLADVQRRDHLDST--RPVSPLRAADDALVVDTSDMDQAQVIAHLLDL  224 (233)
T ss_dssp             HHHHHHHHHHT-------------TCCCCHHHHHHHHHHHHHHHHH--SCSSCCSCCTTSEEEECTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc-------------cCCCCHHHHHHHHHHHHHhhhh--ccccccccccCcEEEECCCCCHHHHHHHHHHH
Confidence            99886421100             0011234444444332211100  0001   111127788765 999999999998


Q ss_pred             HHhcC
Q 024067          257 LHLQH  261 (273)
Q Consensus       257 l~~~~  261 (273)
                      +..+.
T Consensus       225 i~~~~  229 (233)
T 3r20_A          225 VTAQA  229 (233)
T ss_dssp             C----
T ss_pred             HHHhh
Confidence            87654

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=99.18  E-value=1.5e-12  Score=109.35  Aligned_cols=176  Identities=16%  Similarity=0.120  Sum_probs=89.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChH-HHHHHHHHHC--CCCCCHHHHHHHH--------H
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSAL-YKQIANAVNE--GKLVPEDVIFALL--------S  132 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~-g~~i~~~l~~--g~~~~~~~~~~ll--------~  132 (273)
                      +.|+|+|++||||||+++.|++.++...+++. +++ +...+++. ++.++..+..  |...++.....++        .
T Consensus         1 ~~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~-~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~   78 (214)
T 1gtv_A            1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVA-TLA-FPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAV   78 (214)
T ss_dssp             CEEEEEEEEEEEHHHHHHHHHHHHHEEEEEEE-EEE-SSEEEEEEEEEEHHHHEEEEEEEEEEEHHHHHHHHHHHHHEEH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE-EEe-ecCCCCcchhhHHHHHHcccccccCCCHhHHHHHHHHHHhhhH
Confidence            36899999999999999999999864333221 000 00000111 2222222211  1111111111111        0


Q ss_pred             HHHHhcccCCcceEEEeCCCCCH--HHH------------HHHHhh-------CCCceEEEEccCHHHHHHHHhcCCcCC
Q 024067          133 KRLEEGYYRGESGFILDGIPRTR--IQA------------EILDQI-------VDVDLVINFKSIEDQLVKRNLESEAFS  191 (273)
Q Consensus       133 ~~l~~~~~~~~~g~IlDg~P~~~--~qa------------~~l~~~-------~~~d~vI~L~~~~e~l~~Rl~~R~~~~  191 (273)
                      +.+... ...+..+|+|+++.+.  .|.            +.+...       ..||.+|+|+++++++.+|+..|....
T Consensus        79 ~~i~~~-l~~g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~  157 (214)
T 1gtv_A           79 HTIQGL-CRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRD  157 (214)
T ss_dssp             HHHHHE-EEEEEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHHHHHHHHHEB
T ss_pred             HHHHHH-hhCCCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHHHHHcccccc
Confidence            112211 1124568999998652  222            112221       268999999999999999998885320


Q ss_pred             CcccccccCCCCCCCCCcHHHHHHHHH-HHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHH
Q 024067          192 PHKEFLRLGGARFSAADAASAWKEKFR-IYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLS  255 (273)
Q Consensus       192 ~~~~~y~~~~~~~~~~d~~e~~~~rl~-~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~  255 (273)
                       .++.-+      ..+.. +.+.+++. .|.+.    .+.|. ...++.||+++++++++++|..
T Consensus       158 -~~~~~d------~~e~~-~~~~~~~~~~~~~~----~~~~~-~~~~~vId~~~~~~~v~~~i~~  209 (214)
T 1gtv_A          158 -PGRARD------NYERD-AELQQRTGAVYAEL----AAQGW-GGRWLVVGADVDPGRLAATLAP  209 (214)
T ss_dssp             -BEEEEE------EEEEE-HHHHHHHHHHHHHH----HHEEE-EEEEEEEEEEEBHHHHHHHHC-
T ss_pred             -cccccc------ccccc-HHHHHHHHHHHHHH----HHhCC-CCCEEEEeCCCCHHHHHHHhcC
Confidence             010000      00001 24444443 34322    22121 1357889999999999988854

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=99.16  E-value=5.4e-11  Score=101.80  Aligned_cols=78  Identities=12%  Similarity=0.077  Sum_probs=38.8

Q ss_pred             CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCc--HHHHHHHHHHHHHhhHHHHHHH-HhcCcEEEEe
Q 024067          165 VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADA--ASAWKEKFRIYAEQGKSLEDYY-SKQRKLLNFQ  241 (273)
Q Consensus       165 ~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~--~e~~~~rl~~y~~~~~~l~~~y-~~~~~~~~id  241 (273)
                      ..||++|+|++|++++++|+..|...                ++.  ...+.+++..+....  ...|| .....++.||
T Consensus       145 ~~pD~vi~Ld~~~e~~~~Ri~~R~r~----------------~e~~~~~~~~~rv~~~~~~~--~~~~~~~~~~~~~vId  206 (230)
T 2vp4_A          145 VQADLIIYLRTSPEVAYERIRQRARS----------------EESCVPLKYLQELHELHEDW--LIHQRRPQSCKVLVLD  206 (230)
T ss_dssp             CCCSEEEEEECCHHHHHHHHHHHCCG----------------GGTTCCHHHHHHHHHHHHHH--HTSCCSSCCCEEEEEE
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHcCCc----------------ccccCcHHHHHHHHHHHHHH--HHHhcccCCCCEEEEE
Confidence            36999999999999999999876421                111  113555655443321  11222 3345689999


Q ss_pred             CCCChhHHHHHHHHHHHhc
Q 024067          242 VAAAPGETWQGLLSALHLQ  260 (273)
Q Consensus       242 ~~~s~~ev~~~I~~~l~~~  260 (273)
                      +++++++|+++|.+.+...
T Consensus       207 ~~~~~eev~~~I~~~l~~~  225 (230)
T 2vp4_A          207 ADLNLENIGTEYQRSESSI  225 (230)
T ss_dssp             CCC----------------
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            9999999999999988643

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=99.12  E-value=3.7e-10  Score=109.77  Aligned_cols=165  Identities=16%  Similarity=0.147  Sum_probs=88.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh---CCCeechh-HHHHHHccCCChHH-HHHHHHHHCCCCCCHHHHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVPHISMG-SLVRQELSPRSALY-KQIANAVNEGKLVPEDVIFALLSKRL  135 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~---g~~~is~~-dllr~~~~~~~~~g-~~i~~~l~~g~~~~~~~~~~ll~~~l  135 (273)
                      .+++.|+|+|+|||||||+++.|++++   |++++.+| +.++..+.....+. ..-.+.+        ..+..++...+
T Consensus        50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~--------r~i~eva~~~l  121 (630)
T 1x6v_B           50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENV--------RRIAEVAKLFA  121 (630)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHH--------HHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHH--------HHHHHHHHHHH
Confidence            367899999999999999999999999   98887764 55554332211110 0000000        01112222222


Q ss_pred             HhcccCCcceEEEeC-CCCC--HHHHHHH-HhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHH
Q 024067          136 EEGYYRGESGFILDG-IPRT--RIQAEIL-DQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAAS  211 (273)
Q Consensus       136 ~~~~~~~~~g~IlDg-~P~~--~~qa~~l-~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e  211 (273)
                      ..     +..+|.|. .|..  ..+...+ .....++++|+|++|.+++.+|+..+....  .          +...   
T Consensus       122 ~~-----G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r~ly~~--a----------R~~~---  181 (630)
T 1x6v_B          122 DA-----GLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKK--A----------RAGE---  181 (630)
T ss_dssp             HT-----TCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTTSHHHH--H----------TTC----
T ss_pred             hC-----CCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhccccchh--h----------hhhh---
Confidence            22     23445552 2221  1222222 222447889999999999999986321100  0          0000   


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHh-cCcEEEEeCC-CChhHHHHHHHHHHHhcCC
Q 024067          212 AWKEKFRIYAEQGKSLEDYYSK-QRKLLNFQVA-AAPGETWQGLLSALHLQHM  262 (273)
Q Consensus       212 ~~~~rl~~y~~~~~~l~~~y~~-~~~~~~id~~-~s~~ev~~~I~~~l~~~~~  262 (273)
                           +..|    ..+...|.. ..--+.||++ .+++++.++|.+.|..+..
T Consensus       182 -----~~~~----~~~~~~Ye~p~~~dlvIDts~~s~eevv~~Il~~L~~~~~  225 (630)
T 1x6v_B          182 -----IKGF----TGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQERDI  225 (630)
T ss_dssp             --------C----BTTTBCCCCCSSCSEEEETTSSCHHHHHHHHHHHHHHTTS
T ss_pred             -----HHHH----HHhhhhhcccCCCcEEEECCCCCHHHHHHHHHHHHHhcCc
Confidence                 0001    001122321 1112678987 5999999999999987653

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.11  E-value=1.9e-10  Score=95.77  Aligned_cols=168  Identities=13%  Similarity=0.120  Sum_probs=91.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccC---CCh----HHHHHHHHHHCCCCCCH--------HH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSP---RSA----LYKQIANAVNEGKLVPE--------DV  126 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~---~~~----~g~~i~~~l~~g~~~~~--------~~  126 (273)
                      ++..|+|+||+||||||+++.|+..+.-.+++..++.+.....   +..    ....+......+.....        ..
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHYGT   85 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEE
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeecccccc
Confidence            4678999999999999999999998753333332221110000   000    00112222211111000        00


Q ss_pred             HHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCC
Q 024067          127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSA  206 (273)
Q Consensus       127 ~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~  206 (273)
                      ....+.+.+..     +..+|+|+.+....+..  .....+..++.+..+.+++.+|+.+|...                
T Consensus        86 ~~~~i~~~l~~-----g~~vi~d~~~~~~~~~~--~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~----------------  142 (205)
T 3tr0_A           86 EKDWVLRQLKA-----GRDVLLEIDWQGARQIR--ELFPPALSIFILPPSIEALRERLIKRRQD----------------  142 (205)
T ss_dssp             EHHHHHHHHHT-----TCEEEEECCHHHHHHHH--HHCTTCEEEEEECSCHHHHHHHHHTCTTS----------------
T ss_pred             hHHHHHHHHHc-----CCeEEEEECHHHHHHHH--HhCCCcEEEEEECcCHHHHHHHHHHhCCC----------------
Confidence            01223333443     35788998665444432  22234444555556799999999988632                


Q ss_pred             CCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcC
Q 024067          207 ADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQH  261 (273)
Q Consensus       207 ~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~  261 (273)
                        +++.+++|+..+...    .+++...+ ++.+| + ++++++++|...+....
T Consensus       143 --~~~~i~~rl~~~~~~----~~~~~~~d-~vi~n-~-~~~~~~~~l~~~i~~~~  188 (205)
T 3tr0_A          143 --DTAIIEQRLALAREE----MAHYKEFD-YLVVN-D-NFDQAVQNLIHIISAER  188 (205)
T ss_dssp             --CSSTHHHHHHHHHHH----HTTGGGCS-EEEEC-S-SHHHHHHHHHHHHHHHT
T ss_pred             --CHHHHHHHHHHHHHH----HhcccCCC-EEEEC-C-CHHHHHHHHHHHHHHHH
Confidence              223567777766432    33444444 33333 3 89999999999997543

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=99.11  E-value=9.3e-11  Score=97.69  Aligned_cols=166  Identities=11%  Similarity=0.102  Sum_probs=72.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh-CCCeechhHHHHHHcc---CCCh----HHHHHHHHHHCCCCCCHH--------
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQELS---PRSA----LYKQIANAVNEGKLVPED--------  125 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~-g~~~is~~dllr~~~~---~~~~----~g~~i~~~l~~g~~~~~~--------  125 (273)
                      ++..|+|+|++||||||+++.|++.+ .-..+..+...+....   .+..    -...+..++.+|..+...        
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   84 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYYG   84 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCeecC
Confidence            56789999999999999999999987 2112222222111000   0000    012233334444332110        


Q ss_pred             HHHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCc-eEEEEc-cCHHHHHHHHhcCCcCCCcccccccCCCC
Q 024067          126 VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVD-LVINFK-SIEDQLVKRNLESEAFSPHKEFLRLGGAR  203 (273)
Q Consensus       126 ~~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d-~vI~L~-~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~  203 (273)
                      .....+...+..     +..+|+|+.+....+   +.... +| .+|++. ++.+++.+|+..|..              
T Consensus        85 ~~~~~i~~~l~~-----g~~vv~d~~~~~~~~---~~~~~-~~~~~i~~~~~~~~~~~~Rl~~R~~--------------  141 (207)
T 2j41_A           85 TPVQYVKDTMDE-----GHDVFLEIEVEGAKQ---VRKKF-PDALFIFLAPPSLEHLRERLVGRGT--------------  141 (207)
T ss_dssp             EEHHHHHHHHHT-----TCEEEEECCGGGHHH---HHHHC-TTSEEEEEECCC---------------------------
T ss_pred             CCHHHHHHHHHc-----CCeEEEEECHHHHHH---HHHhc-CCeEEEEEECCCHHHHHHHHHhcCC--------------
Confidence            011223333433     367899987654433   22222 35 334433 568899999987752              


Q ss_pred             CCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcC
Q 024067          204 FSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQH  261 (273)
Q Consensus       204 ~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~  261 (273)
                          ++++.+.+|+..+....    ++|...+ ++ |+.+ ++++++++|...+....
T Consensus       142 ----~~~~~~~~rl~~~~~~~----~~~~~~d-~v-I~n~-~~e~~~~~i~~~l~~~~  188 (207)
T 2j41_A          142 ----ESDEKIQSRINEARKEV----EMMNLYD-YV-VVND-EVELAKNRIQCIVEAEH  188 (207)
T ss_dssp             ------------------CGG----GGGGGCS-EE-EECS-SHHHHHHHHHHHHHHHH
T ss_pred             ----CCHHHHHHHHHHHHHHH----hccccCC-EE-EECC-CHHHHHHHHHHHHHHhh
Confidence                22345677776654332    2344444 44 4444 89999999999987543

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=99.06  E-value=3.4e-10  Score=108.86  Aligned_cols=163  Identities=14%  Similarity=0.118  Sum_probs=90.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC-----CCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLE  136 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g-----~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~  136 (273)
                      .+..|+|+|+|||||||+++.|++.++     +.+++.| .+++.+.....+...-+...       -+.+..++...+.
T Consensus       371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D-~ir~~l~~~~~f~~~er~~~-------l~~i~~~~~~~l~  442 (546)
T 2gks_A          371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGD-VVRTHLSRGLGFSKEDRITN-------ILRVGFVASEIVK  442 (546)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHH-HHHHHTCTTCCSSHHHHHHH-------HHHHHHHHHHHHH
T ss_pred             cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECch-HhhhhhcccccccHHHHHHH-------HHHHHHHHHHHHh
Confidence            467899999999999999999999986     3677764 55655533211111000000       0011122222232


Q ss_pred             hcccCCcceEEEeCCCCCHHHHHHHHhh-CCCc-eEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHH
Q 024067          137 EGYYRGESGFILDGIPRTRIQAEILDQI-VDVD-LVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWK  214 (273)
Q Consensus       137 ~~~~~~~~g~IlDg~P~~~~qa~~l~~~-~~~d-~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~  214 (273)
                           .+.++|+|+..........+... ..++ ++|+|+++.+++.+|+. |....               ++.    .
T Consensus       443 -----~G~~VI~d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl~-r~~~~---------------~~~----~  497 (546)
T 2gks_A          443 -----HNGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERDV-KGLYK---------------KAK----E  497 (546)
T ss_dssp             -----TTCEEEEECCCCCHHHHHHHHTTSCTTCEEEEEEECCGGGHHHHCC-SSHHH---------------HC------
T ss_pred             -----CCCEEEEEcCCCCHHHHHHHHHHhhcCCEEEEEEeCCHHHHHHHhh-ccccc---------------ccc----H
Confidence                 24689999754333333333333 2356 89999999999999985 22100               000    0


Q ss_pred             HHHHHHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHHHHhc
Q 024067          215 EKFRIYAEQGKSLEDYYSKQRKLLNFQVA-AAPGETWQGLLSALHLQ  260 (273)
Q Consensus       215 ~rl~~y~~~~~~l~~~y~~~~~~~~id~~-~s~~ev~~~I~~~l~~~  260 (273)
                      ..+..+.....   .|+.....-+.||++ .+++++.++|...|..+
T Consensus       498 ~~i~~~~~vr~---~~e~~~~adivIDts~~s~eev~~~I~~~L~~~  541 (546)
T 2gks_A          498 GLIKGFTGVDD---PYEPPVAPEVRVDTTKLTPEESALKILEFLKKE  541 (546)
T ss_dssp             ----CCBTTTB---CCCCCSSCSEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhh---ccccccCCcEEEECCCCCHHHHHHHHHHHHHHc
Confidence            01111000000   122111123778986 79999999999999765

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=99.05  E-value=6.6e-11  Score=113.18  Aligned_cols=152  Identities=16%  Similarity=0.190  Sum_probs=85.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCe-----echhHHHHHHccCCChHHHHHHHHHHC-CCC---CCHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPH-----ISMGSLVRQELSPRSALYKQIANAVNE-GKL---VPEDVIFALLS  132 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~-----is~~dllr~~~~~~~~~g~~i~~~l~~-g~~---~~~~~~~~ll~  132 (273)
                      .+..|+++|+|||||||+|+.|++.+++.+     |+.|++.++.......     .+++.. +..   .........+.
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~-----~~~f~~~~~~~~~~re~~~~~~l~  108 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSS-----YNFFRPDNEEAMKVRKQCALAALR  108 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCC-----GGGGCTTCHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCcc-----ccccCcccHHHHHHHHHHHHHHHH
Confidence            567899999999999999999999985443     6778855543222110     011110 000   00011111121


Q ss_pred             ---HHHHhcccCCcceEEEeCCCCCHHHHHHHHhh----CCCceEEEEccC-HHHHHHHHhcCCcCCCcccccccCCCCC
Q 024067          133 ---KRLEEGYYRGESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSI-EDQLVKRNLESEAFSPHKEFLRLGGARF  204 (273)
Q Consensus       133 ---~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~----~~~d~vI~L~~~-~e~l~~Rl~~R~~~~~~~~~y~~~~~~~  204 (273)
                         ..+..   ..+..+|+|+...+..+.+.+...    ...-++|.+.|+ ++++.+|+..|....   -.|.    ..
T Consensus       109 ~~~~~L~~---~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~~~r---Pdl~----~~  178 (520)
T 2axn_A          109 DVKSYLAK---EGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVKISS---PDYK----DC  178 (520)
T ss_dssp             HHHHHHHH---SCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHTTTS---GGGT----TS
T ss_pred             HHHHHHHh---cCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhhhcC---Cccc----cC
Confidence               12211   235789999999888777655332    222356777777 677778886655321   0010    00


Q ss_pred             CCCCcHHHHHHHHHHHHHhhHHHH
Q 024067          205 SAADAASAWKEKFRIYAEQGKSLE  228 (273)
Q Consensus       205 ~~~d~~e~~~~rl~~y~~~~~~l~  228 (273)
                      ..++..+.+.+|+..|+..++++.
T Consensus       179 d~e~~~~~~~~Ri~~y~~~Yepi~  202 (520)
T 2axn_A          179 NSAEAMDDFMKRISCYEASYQPLD  202 (520)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred             CHHHHHHHHHHHHHhhhhhhcccC
Confidence            012223566788888887776654

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=99.04  E-value=8.1e-10  Score=94.87  Aligned_cols=78  Identities=10%  Similarity=-0.006  Sum_probs=47.5

Q ss_pred             CCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHH-HHHHhhH----HH-HHHHHhcCcEEE
Q 024067          166 DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFR-IYAEQGK----SL-EDYYSKQRKLLN  239 (273)
Q Consensus       166 ~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~-~y~~~~~----~l-~~~y~~~~~~~~  239 (273)
                      .||++|+|++|++++.+|+..|....             ....+.+ +.+++. .|.....    |+ .++| ....++.
T Consensus       149 ~pd~~i~l~~~~~~~~~R~~~R~r~~-------------e~~~~~~-~~~~v~~~y~~~~~~~~~p~~~~~~-~~~~~~~  213 (241)
T 2ocp_A          149 TLHGFIYLQASPQVCLKRLYQRAREE-------------EKGIELA-YLEQLHGQHEAWLIHKTTKLHFEAL-MNIPVLV  213 (241)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHSCCTT-------------TTTCCHH-HHHHHHHHHHHHHTSCCSCCCCTTG-GGCCEEE
T ss_pred             CCCEEEEEECCHHHHHHHHHhcCCcc-------------cccCCHH-HHHHHHHHHHHHHhhcccccccccc-CCCCEEE
Confidence            69999999999999999998775311             0011122 233332 3322111    00 0123 2456899


Q ss_pred             EeCCCChhHHHHHHHHHHH
Q 024067          240 FQVAAAPGETWQGLLSALH  258 (273)
Q Consensus       240 id~~~s~~ev~~~I~~~l~  258 (273)
                      ||++++++++.+.+...+.
T Consensus       214 Id~~~~~~~v~~~i~~i~~  232 (241)
T 2ocp_A          214 LDVNDDFSEEVTKQEDLMR  232 (241)
T ss_dssp             EECCSCTTTCHHHHHHHHH
T ss_pred             EECCCChhhCHHHHHHHHH
Confidence            9999999888777766654

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=99.00  E-value=7e-10  Score=93.37  Aligned_cols=167  Identities=14%  Similarity=0.160  Sum_probs=88.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCC-CeechhHHHHHHccC---CCh----HHHHHHHHHHCCCCCCHH--------
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEV-PHISMGSLVRQELSP---RSA----LYKQIANAVNEGKLVPED--------  125 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~-~~is~~dllr~~~~~---~~~----~g~~i~~~l~~g~~~~~~--------  125 (273)
                      ++..|+|+||+||||||+++.|++.++- ...+.....+....+   +..    -...+...+..+..+...        
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~yg   86 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYYG   86 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEccccCC
Confidence            5778999999999999999999998853 222221111110000   000    012333334444322110        


Q ss_pred             HHHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEcc-CHHHHHHHHhcCCcCCCcccccccCCCCC
Q 024067          126 VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKS-IEDQLVKRNLESEAFSPHKEFLRLGGARF  204 (273)
Q Consensus       126 ~~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~-~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~  204 (273)
                      +....+.+.+..     +..+|+|..+....+   +........+|++.. +.+++.+|+..|..               
T Consensus        87 ~~~~~i~~~l~~-----g~~vild~~~~g~~~---~~~~~~~~~~i~i~~ps~~~l~~Rl~~R~~---------------  143 (208)
T 3tau_A           87 TPLEYVEEKLAA-----GVDIFLEIEVQGAMQ---VRKAMPEGIFIFLTPPDLSELKNRIIGRGT---------------  143 (208)
T ss_dssp             EEHHHHHHHHHT-----TCCEEEECCHHHHHH---HHHHCTTSEEEEEECTTTTTSSCC---------------------
T ss_pred             CcHHHHHHHHHc-----CCeEEEEeeHHHHHH---HHHhCCCeEEEEEeCCCHHHHHHHHHhcCC---------------
Confidence            001223444444     467899986544333   222222224555554 48899999988863               


Q ss_pred             CCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcC
Q 024067          205 SAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQH  261 (273)
Q Consensus       205 ~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~  261 (273)
                         ++++.+++|+.......    .++...+ ++.+|  .++++++++|.+++....
T Consensus       144 ---~~~e~i~~Rl~~~~~e~----~~~~~~d-~vivN--~~~~~~~~~l~~~i~~~~  190 (208)
T 3tau_A          144 ---ESMEVVEERMETAKKEI----EMMASYD-YAVVN--DVVANAVQKIKGIVETEH  190 (208)
T ss_dssp             ----CCHHHHHHHHHHHHHH----HHGGGSS-EEEEC--SSHHHHHHHHHHHHHHHH
T ss_pred             ---CCHHHHHHHHHHHHHHH----HhhccCC-EEEEC--cCHHHHHHHHHHHHHHHH
Confidence               23467888887765432    2333333 44444  369999999999997653

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=98.98  E-value=1.4e-09  Score=90.41  Aligned_cols=161  Identities=11%  Similarity=0.084  Sum_probs=98.0

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCC-CeechhHHHHHHccCCC----h----HHHHHHHHHHCCCCCCHH--------HHH
Q 024067           66 WVLIGDPGVKKHVYADNLSKLLEV-PHISMGSLVRQELSPRS----A----LYKQIANAVNEGKLVPED--------VIF  128 (273)
Q Consensus        66 Ivi~G~pGSGKsT~a~~La~~~g~-~~is~~dllr~~~~~~~----~----~g~~i~~~l~~g~~~~~~--------~~~  128 (273)
                      |||+||+||||+|+++.|.+++.- ..+++...-|. ..++.    .    .-+++.+++.+|..+...        +..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~-pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~~   82 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRT-PRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTV   82 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSC-CCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEH
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccC-CCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeeec
Confidence            789999999999999999988742 22333222221 11111    1    124667777777665431        112


Q ss_pred             HHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhh--CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCC
Q 024067          129 ALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI--VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSA  206 (273)
Q Consensus       129 ~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~--~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~  206 (273)
                      ..+...+..     +..+|+|.-+....|   +...  ..+..++.+-.+.+++.+|+.+|+.                 
T Consensus        83 ~~v~~~l~~-----g~~vil~id~~g~~~---~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~-----------------  137 (186)
T 1ex7_A           83 ASVKQVSKS-----GKTCILDIDMQGVKS---VKAIPELNARFLFIAPPSVEDLKKRLEGRGT-----------------  137 (186)
T ss_dssp             HHHHHHHHH-----TSEEEEECCHHHHHH---HHTCGGGCCEEEEEECSCHHHHHHHHHHHCC-----------------
T ss_pred             ceeeehhhC-----CCEEEecCCHHHHHH---HHHhcccCceEEEEeCCCHHHHHHHHHhcCC-----------------
Confidence            344455554     367899976544443   3322  1344555566678999999999873                 


Q ss_pred             CCcHHHHHHHHHHHHHhhHHHHHHHHhcC-cEEEEeCCCChhHHHHHHHHHHHh
Q 024067          207 ADAASAWKEKFRIYAEQGKSLEDYYSKQR-KLLNFQVAAAPGETWQGLLSALHL  259 (273)
Q Consensus       207 ~d~~e~~~~rl~~y~~~~~~l~~~y~~~~-~~~~id~~~s~~ev~~~I~~~l~~  259 (273)
                       ++++.+++|+........    +..... ..+.+|  .+.++.+++|.++|..
T Consensus       138 -e~~e~i~~Rl~~a~~e~~----~~~~~~fD~vIvN--ddle~a~~~l~~iI~a  184 (186)
T 1ex7_A          138 -ETEESINKRLSAAQAELA----YAETGAHDKVIVN--DDLDKAYKELKDFIFA  184 (186)
T ss_dssp             -SCHHHHHHHHHHHHHHHH----HHTTTCSSEEEEC--SSHHHHHHHHHHHHTT
T ss_pred             -CCHHHHHHHHHHHHHHHh----hccccCCcEEEEC--cCHHHHHHHHHHHHHh
Confidence             356789999987765432    111111 134444  5799999999988853

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=98.91  E-value=3.5e-09  Score=102.27  Aligned_cols=164  Identities=12%  Similarity=0.112  Sum_probs=85.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC----C--CeechhHHHHHHccCCChHHHH-HHHHHHCCCCCCHHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE----V--PHISMGSLVRQELSPRSALYKQ-IANAVNEGKLVPEDVIFALLSK  133 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g----~--~~is~~dllr~~~~~~~~~g~~-i~~~l~~g~~~~~~~~~~ll~~  133 (273)
                      .+++.|+|+|+|||||||+|+.|+++++    .  .+++. |.++..+..+..+... -.+.+        ..+..++..
T Consensus       394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~-D~ir~~l~~~~~f~~~er~~~i--------~ri~~v~~~  464 (573)
T 1m8p_A          394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLG-DTVRHELSSELGFTREDRHTNI--------QRIAFVATE  464 (573)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEH-HHHHHHTCTTCCCSHHHHHHHH--------HHHHHHHHH
T ss_pred             ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECc-HHHHHHhccccCCChhHHHHHH--------HHHHHHHHH
Confidence            4578899999999999999999999986    3  45654 4555543322111000 00000        011123333


Q ss_pred             HHHhcccCCcceEEEeCCCCCHHHHHHHHhh---CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcH
Q 024067          134 RLEEGYYRGESGFILDGIPRTRIQAEILDQI---VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAA  210 (273)
Q Consensus       134 ~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~---~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~  210 (273)
                      .+..     +..+|.|.+-.-....+.+...   ..++++|+|+++.+++.+|.....        |..           
T Consensus       465 ~~~~-----g~~VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~~r~l--------~~~-----------  520 (573)
T 1m8p_A          465 LTRA-----GAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRGI--------YAA-----------  520 (573)
T ss_dssp             HHHT-----TCEEEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCSSCH--------HHH-----------
T ss_pred             HHhC-----CCEEEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHhcccc--------hhh-----------
Confidence            2222     3456666432112222222211   134689999999999999953211        000           


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCC-ChhHHHHHHHHHHHhcC
Q 024067          211 SAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAA-APGETWQGLLSALHLQH  261 (273)
Q Consensus       211 e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~-s~~ev~~~I~~~l~~~~  261 (273)
                       .-...+..+....   ..||....--+.||++. +++++.++|...|..+.
T Consensus       521 -~~~~~i~~~~~~r---~~~~~p~~~dl~IDts~~s~eevv~~Il~~l~~~~  568 (573)
T 1m8p_A          521 -ARRGEIKGFTGVD---DPYETPEKADLVVDFSKQSVRSIVHEIILVLESQG  568 (573)
T ss_dssp             -HHTTSSSSCBTTT---BCCCCCSSCSEEECTTTSCHHHHHHHHHHHHHHTT
T ss_pred             -hhHHHHHHHHhcc---ccccccCCCCEEEECCCCCHHHHHHHHHHHHHhcC
Confidence             0000000000000   01221111236789875 99999999999998754

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=98.87  E-value=4.4e-09  Score=91.35  Aligned_cols=120  Identities=13%  Similarity=0.187  Sum_probs=68.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHH-Hcc--CCChHHHHHHH---H-H-----HCCCCCCHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQ-ELS--PRSALYKQIAN---A-V-----NEGKLVPEDVIFALL  131 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~-~~~--~~~~~g~~i~~---~-l-----~~g~~~~~~~~~~ll  131 (273)
                      +.|+|+|||||||||+|+.|+++++++++++|++... ...  ...+..++...   . +     ..+ .+......+..
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~-~~~~~~f~~~~   80 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEG-ILDAESAHRRL   80 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGC-SCCHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccc-cccHHHHHHHH
Confidence            5789999999999999999999999999999886421 110  00000000000   0 0     000 12333344444


Q ss_pred             HHHHHhcccCCcceEEEeCCCCCHHHHH-HHHhh---CCCc-eEEEEccCH-HHHHHHHhcCC
Q 024067          132 SKRLEEGYYRGESGFILDGIPRTRIQAE-ILDQI---VDVD-LVINFKSIE-DQLVKRNLESE  188 (273)
Q Consensus       132 ~~~l~~~~~~~~~g~IlDg~P~~~~qa~-~l~~~---~~~d-~vI~L~~~~-e~l~~Rl~~R~  188 (273)
                      ...+ .. ...+..+|++|...  ...+ .+...   ...+ .+|+|++|. +++.+|+.+|.
T Consensus        81 ~~~i-~~-~~~g~~vIl~gg~~--~~~~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~  139 (253)
T 2ze6_A           81 IFEV-DW-RKSEEGLILEGGSI--SLLNCMAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRV  139 (253)
T ss_dssp             HHHH-HT-TTTSSEEEEEECCH--HHHHHHHHCTTTTSSCEEEEEECCCCCHHHHHHHHHHHH
T ss_pred             HHHH-HH-HhCCCCeEEeccHH--HHHHHHHhcccccccCceEEEEecchhHHHHHHHHHHHH
Confidence            4444 21 12345677775332  2222 22220   1122 689999997 99999998875

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.80  E-value=4.3e-08  Score=80.46  Aligned_cols=168  Identities=16%  Similarity=0.157  Sum_probs=89.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCC--eechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVP--HISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEG  138 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~--~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~  138 (273)
                      .++..|+|+|+|||||||+++.|+..++..  +++.+++... .......+     ++.+.. .+...+.+.+.......
T Consensus         7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~-~~~~~~~~-----~~~~~~-~~~~~v~~~l~~~~~~~   79 (191)
T 1zp6_A            7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGY-IKHGRIDP-----WLPQSH-QQNRMIMQIAADVAGRY   79 (191)
T ss_dssp             CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHT-CCSSCCCT-----TSSSHH-HHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhh-hhcccccC-----Cccchh-hhhHHHHHHHHHHHHHH
Confidence            357889999999999999999999987554  7777776542 11110000     000000 00112222221111100


Q ss_pred             ccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHH
Q 024067          139 YYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFR  218 (273)
Q Consensus       139 ~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~  218 (273)
                       ...+..+++|++.... +...+.....+-.++++.++.++++.|+..|....              . .+++.+++.++
T Consensus        80 -~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~--------------l-ld~~~~~~~~~  142 (191)
T 1zp6_A           80 -AKEGYFVILDGVVRPD-WLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDS--------------L-SDPLVVADLHS  142 (191)
T ss_dssp             -HHTSCEEEECSCCCTT-TTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTS--------------C-CCHHHHHHHHH
T ss_pred             -hccCCeEEEeccCcHH-HHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCc--------------c-CCHHHHHHHHH
Confidence             0123457889865432 22223222223358999999999999998875211              1 12333332222


Q ss_pred             HHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHHHHhcC
Q 024067          219 IYAEQGKSLEDYYSKQRKLLNFQVA-AAPGETWQGLLSALHLQH  261 (273)
Q Consensus       219 ~y~~~~~~l~~~y~~~~~~~~id~~-~s~~ev~~~I~~~l~~~~  261 (273)
                      .+    .+   .|.. +. +.||++ .+++++++.|.+.+....
T Consensus       143 ~~----~~---l~~~-~~-~~i~t~~~~~~~~~~~i~~~l~~~~  177 (191)
T 1zp6_A          143 QF----AD---LGAF-EH-HVLPVSGKDTDQALQSAINALQSGR  177 (191)
T ss_dssp             HT----TC---CGGG-GG-GEEECTTCCTTTTTTTTHHHHHHTT
T ss_pred             HH----hc---cCcc-cc-cEEECCCCCHHHHHHHHHHHHHhhh
Confidence            21    11   1221 12 345655 689999999999987653

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.74  E-value=1e-07  Score=78.33  Aligned_cols=116  Identities=16%  Similarity=0.095  Sum_probs=64.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCC-CeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEV-PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~-~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~  141 (273)
                      +..|+|+||+||||||+++.|++.++. .+++.+++... ...+. ..+..       ...+...+.+.+....... ..
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~-~~~~~-~~~~~-------~~~~~~~~~~~l~~~~~~~-~~   71 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHM-VVGGY-RPPWE-------SDELLALTWKNITDLTVNF-LL   71 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTT-CCTTC-CCGGG-------CHHHHHHHHHHHHHHHHHH-HH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhh-hcccc-ccCcc-------chhHHHHHHHHHHHHHHHH-Hh
Confidence            457889999999999999999998865 78887765432 11100 00000       0000111222222211110 01


Q ss_pred             CcceEEEeCCCCCHHHHHHHHhh----C-C-CceEEEEccCHHHHHHHHhcCCc
Q 024067          142 GESGFILDGIPRTRIQAEILDQI----V-D-VDLVINFKSIEDQLVKRNLESEA  189 (273)
Q Consensus       142 ~~~g~IlDg~P~~~~qa~~l~~~----~-~-~d~vI~L~~~~e~l~~Rl~~R~~  189 (273)
                      ....+|+|++- .....+.+...    . . .-.+++|.++.+++.+|...|..
T Consensus        72 ~~~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~  124 (189)
T 2bdt_A           72 AQNDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKK  124 (189)
T ss_dssp             TTCEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC
T ss_pred             cCCcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccc
Confidence            23568999853 22222222211    1 1 33478899999999999988754

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.67  E-value=6.5e-07  Score=76.87  Aligned_cols=174  Identities=13%  Similarity=0.098  Sum_probs=90.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCC----------eechhHHHHHHccCCChHHHHHHHHHHCCC-----CCCHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVP----------HISMGSLVRQELSPRSALYKQIANAVNEGK-----LVPED  125 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~----------~is~~dllr~~~~~~~~~g~~i~~~l~~g~-----~~~~~  125 (273)
                      .++.+|.|+||.||||||+++.|+..+|..          +++.+.+.+     .-...+.+........     ....+
T Consensus        23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~-----~l~~~~~~~~~~~~~~~~~~~~~~~~   97 (245)
T 2jeo_A           23 MRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYK-----VLTAEQKAKALKGQYNFDHPDAFDND   97 (245)
T ss_dssp             CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBC-----CCCHHHHHHHHTTCCCTTSGGGBCHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCcc-----ccCHhHhhhhhccCCCCCCcccccHH
Confidence            357889999999999999999999998865          566654322     1112222221111100     01112


Q ss_pred             HHHHHHHHHHHhcc--------------------cCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHh
Q 024067          126 VIFALLSKRLEEGY--------------------YRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNL  185 (273)
Q Consensus       126 ~~~~ll~~~l~~~~--------------------~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~  185 (273)
                      .+.+.+.. +....                    ......+|+||. ....... +..  ..+.+|++.++++..+.|..
T Consensus        98 ~~~~~L~~-l~~~~~~~~~~ls~g~~~r~~~~~~~~~~~~lilDg~-~~~~~~~-l~~--~~~~~i~v~th~~~~~~r~~  172 (245)
T 2jeo_A           98 LMHRTLKN-IVEGKTVEVPTYDFVTHSRLPETTVVYPADVVLFEGI-LVFYSQE-IRD--MFHLRLFVDTDSDVRLSRRV  172 (245)
T ss_dssp             HHHHHHHH-HHTTCCEEECCEETTTTEECSSCEEECCCSEEEEECT-TTTTSHH-HHT--TCSEEEEEECCHHHHHHHHH
T ss_pred             HHHHHHHH-HHCCCCeecccccccccCccCceEEecCCCEEEEeCc-cccccHH-HHH--hcCeEEEEECCHHHHHHHHH
Confidence            23333332 21110                    112346889983 2221122 222  25889999999877776665


Q ss_pred             cCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHhhH-HHHHH---HHhcCcEEE---EeCCCChhHHHHHHHHHHH
Q 024067          186 ESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGK-SLEDY---YSKQRKLLN---FQVAAAPGETWQGLLSALH  258 (273)
Q Consensus       186 ~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~~~~-~l~~~---y~~~~~~~~---id~~~s~~ev~~~I~~~l~  258 (273)
                      .|....  |             .+.+.+.+++.   .... +...|   .++...++.   +|++.+++++.++|...+.
T Consensus       173 ~r~~~~--G-------------~~~e~~~~~~~---~~~~~~~~~~i~p~~~~aD~vi~~~~dn~~~~~~l~~~i~~~~~  234 (245)
T 2jeo_A          173 LRDVRR--G-------------RDLEQILTQYT---TFVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILN  234 (245)
T ss_dssp             HHHTC------------------CHHHHHHHHH---HTHHHHHHHHTGGGGGGCSEEEESSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHc--C-------------CCHHHHHHHHH---HhhhHhHHHhCCcchhcceEEEcCCCCccHHHHHHHHHHHHHHh
Confidence            554311  1             12344444433   2111 11222   122222332   2656689999999999987


Q ss_pred             hcCC
Q 024067          259 LQHM  262 (273)
Q Consensus       259 ~~~~  262 (273)
                      .+..
T Consensus       235 ~~~~  238 (245)
T 2jeo_A          235 GDIC  238 (245)
T ss_dssp             TCC-
T ss_pred             cchh
Confidence            6543

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=98.66  E-value=5.7e-08  Score=87.65  Aligned_cols=29  Identities=17%  Similarity=0.029  Sum_probs=26.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV   89 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~   89 (273)
                      .+++.|+|.|+.||||||+++.|++.++.
T Consensus         5 ~~~~fI~~EG~dGaGKTT~~~~La~~L~~   33 (334)
T 1p6x_A            5 VTIVRIYLDGVYGIGKSTTGRVMASAASG   33 (334)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            46789999999999999999999999864

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.64  E-value=1.4e-07  Score=78.72  Aligned_cols=39  Identities=18%  Similarity=0.235  Sum_probs=33.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC--CCeechhHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE--VPHISMGSLVR   99 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g--~~~is~~dllr   99 (273)
                      .++..|.|+|++||||||+++.|+..++  +.+++.+..++
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~   44 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYK   44 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBC
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCcccc
Confidence            3567899999999999999999999998  88888876553

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=98.61  E-value=5.9e-07  Score=75.26  Aligned_cols=112  Identities=8%  Similarity=0.144  Sum_probs=70.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC---CCeechhHHHHHHccC--C---ChH----------HHHHH----HHHHCC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLE---VPHISMGSLVRQELSP--R---SAL----------YKQIA----NAVNEG  119 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g---~~~is~~dllr~~~~~--~---~~~----------g~~i~----~~l~~g  119 (273)
                      .+++|+|+|.|||||+|++..|.+.+|   ++.++++|.++++...  +   ..+          +..+.    ++...|
T Consensus        10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~~d   89 (202)
T 3ch4_B           10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQAD   89 (202)
T ss_dssp             CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHhcC
Confidence            356888999999999999999999885   7789999999853321  0   110          00100    000001


Q ss_pred             CCCCHHHHHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCC-ceEEEEccCHHHHHHHH
Q 024067          120 KLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDV-DLVINFKSIEDQLVKRN  184 (273)
Q Consensus       120 ~~~~~~~~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~-d~vI~L~~~~e~l~~Rl  184 (273)
                      .    ..++.++.+   .   .....|||||. |.....+.+.+..+. -.+|.+.+++++..+|.
T Consensus        90 ~----~~~~~~~~~---~---~~~~~vII~dv-R~~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg  144 (202)
T 3ch4_B           90 P----GFFCRKIVE---G---ISQPIWLVSDT-RRVSDIQWFREAYGAVTQTVRVVALEQSRQQRG  144 (202)
T ss_dssp             T----TTTHHHHSB---T---CCCSEEEECCC-CSHHHHHHHHHHHGGGEEEEEEEECHHHHHHTT
T ss_pred             c----hHHHHHHHH---h---cCCCcEEEeCC-CCHHHHHHHHHhCCCcEEEEEEECCHHHHHHHh
Confidence            0    011111111   1   12357999987 667777777654332 35899999999999994

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.57  E-value=2.9e-07  Score=78.24  Aligned_cols=166  Identities=15%  Similarity=0.078  Sum_probs=68.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHH-HHhCCCeechhHHHHHHccCC----Ch----HHHHHHHHHHCCCCCCH--------
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLS-KLLEVPHISMGSLVRQELSPR----SA----LYKQIANAVNEGKLVPE--------  124 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La-~~~g~~~is~~dllr~~~~~~----~~----~g~~i~~~l~~g~~~~~--------  124 (273)
                      ++..|+|+||+||||||+++.|+ ..+...+...+...+ ....+    ..    ....+......+.....        
T Consensus        26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (231)
T 3lnc_A           26 VGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTR-AARKGEKEGKDYYFVDREEFLRLCSNGEIIEHAEVFGNFY  104 (231)
T ss_dssp             CCCEEEEECSCC----CHHHHHHC----CEEECCCEESS-CCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCC-CCCccccCCCeEEEecHHHhhhhhhcCceehhhhhccccC
Confidence            56789999999999999999999 766321111110000 00000    00    00122222222221100        


Q ss_pred             HHHHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhC--CCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCC
Q 024067          125 DVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIV--DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGA  202 (273)
Q Consensus       125 ~~~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~--~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~  202 (273)
                      ......+.+.+..     ...+|+|..+..   ...+....  .+..++...++.+++.+|+..|..             
T Consensus       105 ~~~~~~i~~~~~~-----~~~vild~~~~g---~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~~-------------  163 (231)
T 3lnc_A          105 GVPRKNLEDNVDK-----GVSTLLVIDWQG---AFKFMEMMREHVVSIFIMPPSMEELRRRLCGRRA-------------  163 (231)
T ss_dssp             EEECTTHHHHHHH-----TCEEEEECCHHH---HHHHHHHSGGGEEEEEEECSCHHHHHHC-------------------
T ss_pred             CCCHHHHHHHHHc-----CCeEEEEcCHHH---HHHHHHhcCCCeEEEEEECCcHHHHHHHHHHcCC-------------
Confidence            0000112222332     245777754322   22233223  223444556689999999988752             


Q ss_pred             CCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcC
Q 024067          203 RFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQH  261 (273)
Q Consensus       203 ~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~  261 (273)
                           ++++.+++|+......    .+++...+ ++ |+.+ +++++.++|...+....
T Consensus       164 -----~~~~~i~~rl~~~~~~----~~~~~~~d-~v-I~n~-~~e~~~~~l~~~i~~~~  210 (231)
T 3lnc_A          164 -----DDSEVVEARLKGAAFE----ISHCEAYD-YV-IVNE-DIEETADRISNILRAEQ  210 (231)
T ss_dssp             -------------CHHHHHHH----HTTGGGSS-EE-EECS-SHHHHHHHHHHHHHHHH
T ss_pred             -----CCHHHHHHHHHHHHHH----HhhhcCCe-EE-EECc-CHHHHHHHHHHHHHHHh
Confidence                 2344566666654332    22233333 33 3333 79999999999987653

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.52  E-value=4.3e-07  Score=85.58  Aligned_cols=186  Identities=13%  Similarity=0.137  Sum_probs=93.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCC-----eechhHHHHHHccCCChHHHHHHHHHHCCCCC----CHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVP-----HISMGSLVRQELSPRSALYKQIANAVNEGKLV----PEDVIFALL  131 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~-----~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~----~~~~~~~ll  131 (273)
                      .++..|+++|.|||||||++++|++.++..     .++.+++.++........     +++..+...    -.......+
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~-----~ifd~~g~~~~r~re~~~~~~l  111 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSF-----EFFLPDNEEGLKIRKQCALAAL  111 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCG-----GGGCTTCHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcc-----cccCCCCHHHHHHHHHHHHHHH
Confidence            356789999999999999999999988644     444555443321110000     011111000    001111122


Q ss_pred             ---HHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhC---CCceEEEEc---cCHHHHHHHHhcCCcCCCcccccccCCC
Q 024067          132 ---SKRLEEGYYRGESGFILDGIPRTRIQAEILDQIV---DVDLVINFK---SIEDQLVKRNLESEAFSPHKEFLRLGGA  202 (273)
Q Consensus       132 ---~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~---~~d~vI~L~---~~~e~l~~Rl~~R~~~~~~~~~y~~~~~  202 (273)
                         ...+..   .++.++|+|+...+..+.+.+....   .. .+++|+   .+++.+..|+..+....   -.|    .
T Consensus       112 ~~~~~~l~~---~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~-~vv~l~~~~~~~~~i~~r~~~~~~~r---p~~----~  180 (469)
T 1bif_A          112 NDVRKFLSE---EGGHVAVFDATNTTRERRAMIFNFGEQNGY-KTFFVESICVDPEVIAANIVQVKLGS---PDY----V  180 (469)
T ss_dssp             HHHHHHHHT---TCCSEEEEESCCCSHHHHHHHHHHHHHHTC-EEEEEEECCCCHHHHHHHHHHHTTTS---TTT----T
T ss_pred             HHHHHHHHh---CCCCEEEEeCCCCCHHHHHHHHHHHHhcCC-cEEEEEEECCCHHHHHHHHHHhhhcC---Ccc----c
Confidence               222221   2356799999888887766653221   22 345555   34777777776443211   000    0


Q ss_pred             CCCCCCcHHHHHHHHHHHHHhhHHHHHHHHh-cCcEEEEeCC------CChhHHHHHHHHHHHhcCC
Q 024067          203 RFSAADAASAWKEKFRIYAEQGKSLEDYYSK-QRKLLNFQVA------AAPGETWQGLLSALHLQHM  262 (273)
Q Consensus       203 ~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~-~~~~~~id~~------~s~~ev~~~I~~~l~~~~~  262 (273)
                      ....++..+.+.+|+..|....+++.+.-.. ...+..+|+.      +...-+...|.-+|..-|.
T Consensus       181 ~~~~e~~~~~~~~R~~~y~~~ye~l~~~~~~~~~~ik~~d~~~~~~~~~~~g~~~~~~~~~l~n~~~  247 (469)
T 1bif_A          181 NRDSDEATEDFMRRIECYENSYESLDEEQDRDLSYIKIMDVGQSYVVNRVADHIQSRIVYYLMNIHV  247 (469)
T ss_dssp             TSCHHHHHHHHHHHHHHHHTTCCCCCTTTTTTSCEEEEETTTTEEEEECCCSHHHHHHHHHHTTCCC
T ss_pred             CCCHHHHHHHHHHHHHHhccEeEECCccccCCcceEEEEcCccceeccCccccchhhHHHHHhccCC
Confidence            0001122356667788887777666531111 1123334432      2345566666666655444

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.51  E-value=1.9e-07  Score=89.70  Aligned_cols=163  Identities=15%  Similarity=0.125  Sum_probs=71.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC------CCeechhHHHHHHccCCChHHH-HHHHHHHCCCCCCHHHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLE------VPHISMGSLVRQELSPRSALYK-QIANAVNEGKLVPEDVIFALLSKR  134 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g------~~~is~~dllr~~~~~~~~~g~-~i~~~l~~g~~~~~~~~~~ll~~~  134 (273)
                      ++..|+|+|++||||||+++.|++.++      +.+++.+++.. .+...-.+.. .....+        ..+..++ +.
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~-~l~~~l~f~~~~r~~~~--------r~i~~v~-q~  437 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRR-HLSSELGFSKAHRDVNV--------RRIGFVA-SE  437 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHH-HTTSSCCCSHHHHHHHH--------HHHHHHH-HH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHH-hhccccCCCHHHHHHHH--------HHHHHHH-HH
Confidence            578899999999999999999999984      34577765543 2211100000 000000        0011111 12


Q ss_pred             HHhcccCCcceEEEeC-CCCCHHH--H-HHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcH
Q 024067          135 LEEGYYRGESGFILDG-IPRTRIQ--A-EILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAA  210 (273)
Q Consensus       135 l~~~~~~~~~g~IlDg-~P~~~~q--a-~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~  210 (273)
                      +..    ....+|..+ .|.....  + +.++... ..++|+|+++.+++.+|.. |....               ..  
T Consensus       438 l~~----~~~ivi~~~~~~~~~~r~~~r~lL~~~g-~f~~V~L~~~~e~~~~R~~-r~l~~---------------~~--  494 (552)
T 3cr8_A          438 ITK----NRGIAICAPIAPYRQTRRDVRAMIEAVG-GFVEIHVATPIETCESRDR-KGLYA---------------KA--  494 (552)
T ss_dssp             HHH----TTCEEEECCCCCCHHHHHHHHHHHHTTS-EEEEEEECC-----------------------------------
T ss_pred             HHh----cCCEEEEecCCccHHHHHHHHHHHHHcC-CEEEEEEcCCHHHHHHhcc-ccccc---------------cc--
Confidence            221    123344443 2322211  1 2233222 3379999999999999964 22100               00  


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHHHHhcCC
Q 024067          211 SAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVA-AAPGETWQGLLSALHLQHM  262 (273)
Q Consensus       211 e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~-~s~~ev~~~I~~~l~~~~~  262 (273)
                        ....+..+...   -..||....--+.||++ .+++++.++|...|..+..
T Consensus       495 --~~~~i~~l~~~---r~~~e~P~~adl~Idt~~~s~~e~v~~Il~~L~~~~~  542 (552)
T 3cr8_A          495 --RAGLIPEFTGV---SDPYEVPETPELAIDTTGLAIDEAVQQILLKLEHEGY  542 (552)
T ss_dssp             -----------------CCCCCCSSCSEEECCSSCCHHHHHHHHHHHHHHHTC
T ss_pred             --cHhHHHHHHhc---cccccCCCCCCEEEECCCCCHHHHHHHHHHHHHhcCc
Confidence              00111111111   11234311112567876 6899999999999976643

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=98.48  E-value=2.5e-07  Score=81.90  Aligned_cols=38  Identities=11%  Similarity=0.197  Sum_probs=31.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC-----CCeechhHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVR   99 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g-----~~~is~~dllr   99 (273)
                      +++.|.|+|++||||||+++.|++.+|     +.+|++|++.+
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r   46 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR   46 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence            567899999999999999999999988     78999998874

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.40  E-value=3.5e-07  Score=76.19  Aligned_cols=118  Identities=13%  Similarity=0.115  Sum_probs=54.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh---CCC--eechhHHHHH---HccCCChHHHHHHHHHHCCCCCCHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVP--HISMGSLVRQ---ELSPRSALYKQIANAVNEGKLVPEDVIFALLS  132 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~---g~~--~is~~dllr~---~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~  132 (273)
                      .++..|.|+|++||||||+++.|+..+   +..  +++.|.+.+.   ....+...+..   +.. |. +..+.+.+.+.
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~---~~~-~~-~d~~~l~~~v~   94 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFE---YYY-LQ-WDVEWLTHQLF   94 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHH---HHH-TS-SCHHHHHHHTG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccC---CCc-cc-cCHHHHHHHHH
Confidence            467899999999999999999999976   443  3444544321   11122222221   111 11 12222222221


Q ss_pred             HHHHh--------------------cccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCC
Q 024067          133 KRLEE--------------------GYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE  188 (273)
Q Consensus       133 ~~l~~--------------------~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~  188 (273)
                      ..+..                    ........+|+||......+   +.  ..+|.+|+++||.+++++|+..|.
T Consensus        95 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vIveg~~l~~~~---~~--~~~d~~i~v~~~~~~~~~R~~~R~  165 (201)
T 1rz3_A           95 RQLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRKE---WR--PFFDFVVYLDCPREIRFARENDQV  165 (201)
T ss_dssp             GGTTTCSEEEEEEEETTTTEEEEEEEECTTCSEEEEEETTTTSTT---TG--GGCSEEEEECCC------------
T ss_pred             HHHhcCCccccCceeccCCCCCCceEEeCCCcEEEEechhhccHH---HH--hhcCEEEEEeCCHHHHHHHHhcCC
Confidence            11110                    00112356888885422111   11  236899999999999999998875

>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1

Probab=98.39  E-value=1.2e-06  Score=79.15  Aligned_cols=29  Identities=21%  Similarity=0.135  Sum_probs=26.1

Q ss_pred             CCCeEEEEEcCCCCChhHHH-HHHHHHhCC
Q 024067           61 RRGVQWVLIGDPGVKKHVYA-DNLSKLLEV   89 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a-~~La~~~g~   89 (273)
                      .+++.|+|.|+.||||||++ +.|++.++-
T Consensus        10 ~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~   39 (341)
T 1osn_A           10 MGVLRIYLDGAYGIGKTTAAEEFLHHFAIT   39 (341)
T ss_dssp             EEEEEEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred             CCceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence            46789999999999999999 999998864

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.36  E-value=2.2e-06  Score=70.06  Aligned_cols=29  Identities=21%  Similarity=0.242  Sum_probs=25.0

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      |.++..++|+||+||||||+++.|+..+.
T Consensus         2 ~~~g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            2 SHMRKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            34677899999999999999999999764

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=98.35  E-value=3.8e-07  Score=82.28  Aligned_cols=36  Identities=19%  Similarity=0.282  Sum_probs=33.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSL   97 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dl   97 (273)
                      ++..|+|+||+||||||++..||++++..+||+|.+
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~   74 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM   74 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence            456899999999999999999999999999998876

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=98.34  E-value=1.4e-05  Score=73.07  Aligned_cols=28  Identities=18%  Similarity=0.084  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      .+++.|+|.|+.||||||+++.|++.++
T Consensus        47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~   74 (376)
T 1of1_A           47 PTLLRVYIDGPHGMGKTTTTQLLVALGS   74 (376)
T ss_dssp             CEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence            4688999999999999999999999875

>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...

Probab=98.31  E-value=1.2e-05  Score=72.25  Aligned_cols=28  Identities=18%  Similarity=0.084  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      .+++.|+|.|+.||||||+++.|++.++
T Consensus         2 ~~~~fI~~EG~dGsGKTT~~~~La~~L~   29 (331)
T 1e2k_A            2 PTLLRVYIDGPHGMGKTTTTQLLVALGS   29 (331)
T ss_dssp             CEEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred             CccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3678999999999999999999999875

>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}

Probab=98.30  E-value=3.8e-06  Score=74.54  Aligned_cols=165  Identities=7%  Similarity=-0.055  Sum_probs=90.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCC---eechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP---HISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEG  138 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~---~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~  138 (273)
                      .++.|+|.|..||||||++++|.+.++-.   ++.+.          .+.++++.      ..+        +......-
T Consensus        85 ~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~----------~Pt~eE~~------~~y--------l~R~~~~L  140 (304)
T 3czq_A           85 KRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALT----------KPTETERG------QWY--------FQRYVATF  140 (304)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECC----------SCCHHHHT------SCT--------THHHHTTC
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeC----------CcChHHHh------chH--------HHHHHHhc
Confidence            58999999999999999999999999543   33221          11122221      111        11111111


Q ss_pred             ccCCcceEEEeCCCCC------------HH-------HHHHHHh----hCCCceEEEEccCHHHHHHHHhcCCcCCCccc
Q 024067          139 YYRGESGFILDGIPRT------------RI-------QAEILDQ----IVDVDLVINFKSIEDQLVKRNLESEAFSPHKE  195 (273)
Q Consensus       139 ~~~~~~g~IlDg~P~~------------~~-------qa~~l~~----~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~  195 (273)
                       ...+.-+|.|.+-.+            ..       +...++.    .+.|++.|+|+++.++..+|+..|..++... 
T Consensus       141 -P~~G~IvIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~R~~dp~k~-  218 (304)
T 3czq_A          141 -PTAGEFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDRRHDPLKI-  218 (304)
T ss_dssp             -CCTTCEEEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHHHHHCTTTG-
T ss_pred             -ccCCeEEEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHHhhcCcccc-
Confidence             112344677754321            11       1122211    2468999999999999999998776433110 


Q ss_pred             ccccCCCCCCCCCcHHHHH--HHHHHHHHhhHHHHHHHH-hcCcEEEEeCCCC---hhHHHHHHHHHHHhcCC
Q 024067          196 FLRLGGARFSAADAASAWK--EKFRIYAEQGKSLEDYYS-KQRKLLNFQVAAA---PGETWQGLLSALHLQHM  262 (273)
Q Consensus       196 ~y~~~~~~~~~~d~~e~~~--~rl~~y~~~~~~l~~~y~-~~~~~~~id~~~s---~~ev~~~I~~~l~~~~~  262 (273)
                       +         .-+...++  +.+..|.+........-. ....|+.|+++..   .-.+.+.|++.|.....
T Consensus       219 -W---------k~s~~D~~~~~~~~~y~~a~~~ml~~T~t~~apW~vIda~dk~~arl~v~~~Il~~l~~~~~  281 (304)
T 3czq_A          219 -W---------KLSPMDIAALSKWDDYTGKRDRMLKETHTEHGPWAVIRGNDKRRSRINVIRHMLTKLDYDGK  281 (304)
T ss_dssp             -G---------GCCHHHHHGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHCCCTTC
T ss_pred             -c---------CCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEEECCCcchHHHHHHHHHHHHHhhccC
Confidence             0         01222233  233444444333322111 1235999999874   35667777777665544

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.21  E-value=2.1e-06  Score=71.75  Aligned_cols=37  Identities=22%  Similarity=0.300  Sum_probs=30.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC-----CCeechhHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSL   97 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g-----~~~is~~dl   97 (273)
                      .++.+|.|+||+||||||+++.|+..+.     ..+|+.++.
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~   61 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF   61 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence            4688999999999999999999999885     556666543

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.20  E-value=1.2e-05  Score=67.11  Aligned_cols=30  Identities=23%  Similarity=0.173  Sum_probs=26.1

Q ss_pred             CCCCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067           59 PPRRGVQWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        59 ~~~~~~~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      ++.++..|+|+||+||||||+++.|.+.+.
T Consensus        15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           15 YFQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             -CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            345778899999999999999999999875

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.15  E-value=1.4e-05  Score=67.71  Aligned_cols=168  Identities=10%  Similarity=0.092  Sum_probs=87.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCC--Ceech--hH-HHHHHccCCCh----HHHHHHHHHHCCCCCCH--------
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEV--PHISM--GS-LVRQELSPRSA----LYKQIANAVNEGKLVPE--------  124 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~--~~is~--~d-llr~~~~~~~~----~g~~i~~~l~~g~~~~~--------  124 (273)
                      ++..++|+||+||||||+.+.|+..+..  ...++  .. -.+.....+-.    ....+......|.....        
T Consensus        15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~y   94 (219)
T 1s96_A           15 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYY   94 (219)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhccC
Confidence            5778999999999999999999998652  11111  00 00000000000    01122222222111000        


Q ss_pred             HHHHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCC
Q 024067          125 DVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF  204 (273)
Q Consensus       125 ~~~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~  204 (273)
                      .+-...+...+..     +.-+|+|.-|....+..  +.+...-.+|+..-+.+.+.+|+..|+                
T Consensus        95 g~~~~~v~~~l~~-----G~illLDLD~~~~~~i~--~~l~~~~tI~i~th~~~~l~~Rl~~rG----------------  151 (219)
T 1s96_A           95 GTSREAIEQVLAT-----GVDVFLDIDWQGAQQIR--QKMPHARSIFILPPSKIELDRRLRGRG----------------  151 (219)
T ss_dssp             EEEHHHHHHHHTT-----TCEEEEECCHHHHHHHH--HHCTTCEEEEEECSSHHHHHHHHHTTS----------------
T ss_pred             CCCHHHHHHHHhc-----CCeEEEEECHHHHHHHH--HHccCCEEEEEECCCHHHHHHHHHHcC----------------
Confidence            0001123333433     46789994433333322  222222234444557788999997776                


Q ss_pred             CCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcC
Q 024067          205 SAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQH  261 (273)
Q Consensus       205 ~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~  261 (273)
                        .++++.+.+|+.......    .++...+ .+.+|  .+.++.+++|.+++....
T Consensus       152 --~~~~e~i~~rl~~a~~e~----~~~~~~d-~~i~N--d~l~~a~~~l~~ii~~~~  199 (219)
T 1s96_A          152 --QDSEEVIAKRMAQAVAEM----SHYAEYD-YLIVN--DDFDTALTDLKTIIRAER  199 (219)
T ss_dssp             --CSCHHHHHHHHHHHHHHH----TTGGGSS-EEEEC--SSHHHHHHHHHHHHHHHH
T ss_pred             --CCCHHHHHHHHHHHHHHH----hhccCCC-EEEEC--cCHHHHHHHHHHHHHHHH
Confidence              234678888887654332    2222223 33344  689999999999987553

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=98.08  E-value=1.5e-06  Score=77.99  Aligned_cols=37  Identities=24%  Similarity=0.180  Sum_probs=33.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLV   98 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dll   98 (273)
                      .+..|+|+||+||||||++..|+++++..+|++|.+.
T Consensus         4 m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q   40 (323)
T 3crm_A            4 LPPAIFLMGPTAAGKTDLAMALADALPCELISVDSAL   40 (323)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence            3468999999999999999999999999999998763

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.08  E-value=1.6e-06  Score=77.81  Aligned_cols=38  Identities=21%  Similarity=0.202  Sum_probs=31.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC-------CCeechhHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-------VPHISMGSLV   98 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g-------~~~is~~dll   98 (273)
                      .++.+|.|+||+||||||+++.|+..++       +..++.|+..
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~  134 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL  134 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence            4678899999999999999999999875       4457776643

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.01  E-value=9.2e-06  Score=67.46  Aligned_cols=27  Identities=22%  Similarity=0.143  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      ++..++|+||+||||||+.+.|...+.
T Consensus         3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            3 GPRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            356789999999999999999998763

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.87  E-value=5.1e-06  Score=74.98  Aligned_cols=34  Identities=21%  Similarity=0.181  Sum_probs=32.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSL   97 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dl   97 (273)
                      ..|+|+||+||||||+|..|++.++..+|++|++
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~   41 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM   41 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence            5899999999999999999999999999999876

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=97.86  E-value=9.9e-06  Score=69.74  Aligned_cols=40  Identities=15%  Similarity=0.112  Sum_probs=36.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHcc
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS  103 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~  103 (273)
                      ++|.|+|++||||||+++.|.+++|+++++.++.+++++.
T Consensus         2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~~~   41 (241)
T 1dek_A            2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALA   41 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHHHHH
Confidence            6789999999999999999999999999999988876553

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=97.81  E-value=9.4e-06  Score=72.32  Aligned_cols=36  Identities=31%  Similarity=0.272  Sum_probs=32.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSL   97 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dl   97 (273)
                      .+..|+|+||+||||||++..|+++++.++||.|.+
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~   44 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSA   44 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence            467889999999999999999999999988887653

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=97.79  E-value=0.00016  Score=68.41  Aligned_cols=29  Identities=21%  Similarity=0.163  Sum_probs=26.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV   89 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~   89 (273)
                      ..++.|+|.|..||||+|+.+.|.+.++=
T Consensus        41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~p   69 (500)
T 3czp_A           41 RFPVIILINGIEGAGKGETVKLLNEWMDP   69 (500)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHSCG
T ss_pred             CCCEEEEEeCcCCCCHHHHHHHHHHhcCc
Confidence            46899999999999999999999999953

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=97.79  E-value=1e-05  Score=72.28  Aligned_cols=35  Identities=26%  Similarity=0.158  Sum_probs=31.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSL   97 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dl   97 (273)
                      ++.|+|+||+||||||++..|+++++..+||+|.+
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~   37 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM   37 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence            56789999999999999999999999999988765

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=97.73  E-value=0.00025  Score=62.76  Aligned_cols=163  Identities=8%  Similarity=0.056  Sum_probs=90.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCC-CeechhHHHHHHccCC----Ch-----HHHHHHHHHHCCCCCCHH-----
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV-PHISMGSLVRQELSPR----SA-----LYKQIANAVNEGKLVPED-----  125 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~-~~is~~dllr~~~~~~----~~-----~g~~i~~~l~~g~~~~~~-----  125 (273)
                      ..+..|+|+||   ||+|+.+.|.+.+.- ..+++...-|. ..++    ..     .-+++...+.+|..+...     
T Consensus       103 ~~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~-~R~gE~~G~dY~Fv~s~eef~~~i~~g~flE~~~~~g~  178 (295)
T 1kjw_A          103 HYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRP-KREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSH  178 (295)
T ss_dssp             CSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSC-CCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTE
T ss_pred             CCCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccC-CCCccccCceeEecCCHHHHHHHHHCCCcEEEEEEcCc
Confidence            35567889998   799999999997641 11222111111 1111    00     234566667777654321     


Q ss_pred             ---HHHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccC-HHHHHHHHhcCCcCCCcccccccCC
Q 024067          126 ---VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSI-EDQLVKRNLESEAFSPHKEFLRLGG  201 (273)
Q Consensus       126 ---~~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~-~e~l~~Rl~~R~~~~~~~~~y~~~~  201 (273)
                         +-..-+.+.+..     ++.+|+|.-+....+...  ....| ++|++..| .+++. ++.+|..            
T Consensus       179 ~YGt~~~~V~~~~~~-----G~~vildid~~g~~~l~~--~~~~p-i~IfI~pps~~~L~-~L~~R~t------------  237 (295)
T 1kjw_A          179 LYGTSVQSVREVAEQ-----GKHCILDVSANAVRRLQA--AHLHP-IAIFIRPRSLENVL-EINKRIT------------  237 (295)
T ss_dssp             EEEEEHHHHHHHHHT-----TCEEEECCCTTHHHHHHH--TTCCC-EEEEECCSSHHHHH-HHCTTSC------------
T ss_pred             EeeeeHHHHHHHHhc-----CCeEEEEeCHHHHHHHHh--cccCC-eEEEEECCCHHHHH-HHHhcCC------------
Confidence               112333444444     478999987654443332  11344 78888876 55654 4665541            


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcCC
Q 024067          202 ARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHM  262 (273)
Q Consensus       202 ~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~~  262 (273)
                              ++.+++|+.......   ..+....+ .+ |. +.+.++.+++|.++|.....
T Consensus       238 --------~~~i~~rl~~a~~~e---~~~~~~fd-~v-iv-Nd~le~a~~~l~~ii~~~~~  284 (295)
T 1kjw_A          238 --------EEQARKAFDRATKLE---QEFTECFS-AI-VE-GDSFEEIYHKVKRVIEDLSG  284 (295)
T ss_dssp             --------HHHHHHHHHHHHHHH---HHHGGGCS-EE-EC-CSSHHHHHHHHHHHHHHHSC
T ss_pred             --------HHHHHHHHHHHHHHH---HhccccCe-EE-EE-CcCHHHHHHHHHHHHHhccC
Confidence                    245777877663211   11222222 23 44 35899999999999976543

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=97.72  E-value=0.00016  Score=68.47  Aligned_cols=166  Identities=10%  Similarity=0.035  Sum_probs=87.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC---CCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE---VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEE  137 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g---~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~  137 (273)
                      ..++.|+|.|..||||+|+.++|.+.++   +.++.+.          .|...+.      +..        .+.....+
T Consensus       298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~----------~Pt~~E~------~~~--------yl~R~~~~  353 (500)
T 3czp_A          298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIA----------APTEEER------AQP--------YLWRFWRH  353 (500)
T ss_dssp             GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECC----------SCCHHHH------TSC--------TTHHHHTT
T ss_pred             CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeC----------CCChhhh------cch--------HHHHHHHh
Confidence            3689999999999999999999999984   3333321          0111111      111        11122222


Q ss_pred             cccCCcceEEEeCCCCC------------HH-------HHHHHH----hhCCCceEEEEccCHHHHHHHHhcCCcCCCcc
Q 024067          138 GYYRGESGFILDGIPRT------------RI-------QAEILD----QIVDVDLVINFKSIEDQLVKRNLESEAFSPHK  194 (273)
Q Consensus       138 ~~~~~~~g~IlDg~P~~------------~~-------qa~~l~----~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~  194 (273)
                      - ...+.-+|.|.+-.+            ..       +...++    ..+.+++.|+|+++.++..+|+..|..++...
T Consensus       354 l-P~~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~~p~k~  432 (500)
T 3czp_A          354 I-PARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREKTPYKR  432 (500)
T ss_dssp             C-CCTTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHHHSSCTT
T ss_pred             C-CCCCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHhcCCccc
Confidence            1 122444677754221            11       111221    12468899999999999999999887654211


Q ss_pred             cccccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHh-cCcEEEEeCCC---ChhHHHHHHHHHHHhc
Q 024067          195 EFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSK-QRKLLNFQVAA---APGETWQGLLSALHLQ  260 (273)
Q Consensus       195 ~~y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~-~~~~~~id~~~---s~~ev~~~I~~~l~~~  260 (273)
                        +..     .+.|-.  -.++...|.+........-.. ...|+.|+++.   ..-.|.+.|.+.|...
T Consensus       433 --Wk~-----s~~D~~--~~~~w~~y~~a~~~~l~~T~t~~APW~vI~a~dk~~arl~v~~~i~~~l~~~  493 (500)
T 3czp_A          433 --YKI-----TEEDWR--NRDKWDQYVDAVGDMVDRTSTEIAPWTLVEANDKRFARVKVLRTINDAIEAA  493 (500)
T ss_dssp             --SCC-----CSSTTT--GGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred             --CCC-----CHHHHH--HHHhHHHHHHHHHHHHHHhccCCCCEEEEECCCccchHHHHHHHHHHHHHHH
Confidence              111     011111  012223333322222221111 12599999876   3456667777666543

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.69  E-value=8.9e-06  Score=73.77  Aligned_cols=51  Identities=18%  Similarity=0.355  Sum_probs=39.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCe--------------------echhHHHHHHccCCChHHHHHHHHHHC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPH--------------------ISMGSLVRQELSPRSALYKQIANAVNE  118 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~--------------------is~~dllr~~~~~~~~~g~~i~~~l~~  118 (273)
                      ....|+|+|+|||||||+++.|++.+++++                    +++|+.+.+      ..|+.+.+++..
T Consensus        23 ~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~a~~~g~~~ir~~~~~a~d~D~~I~~------~~g~~i~~if~~   93 (359)
T 2ga8_A           23 YRVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVDSLKT------LQPNKVAEMIEN   93 (359)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHHHHHHHHHSTTCCCEECTTSCCCCSSTTSEE------CCHHHHHHHHHT
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHHHhCCCeeeecccccchHHHHHHHHhhhhhhhHHHH------HhCccHHHHHHH
Confidence            345799999999999999999999999887                    555555432      246677777764

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.69  E-value=2.5e-05  Score=68.82  Aligned_cols=33  Identities=15%  Similarity=0.150  Sum_probs=28.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      .|..++|.||||+|||++|+.||+.+|.+++.+
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v   67 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFRKMGINPIMM   67 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence            456778899999999999999999998776543

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.60  E-value=0.00071  Score=54.45  Aligned_cols=107  Identities=19%  Similarity=0.134  Sum_probs=59.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHH----HHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVI----FALLSKRLEE  137 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~----~~ll~~~l~~  137 (273)
                      ++-.++|+|++||||||+++.+.  .+...++.+ .++..+.+..            |........    .......+..
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~~~--~~~~~~~~d-~~~g~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~   72 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKKHF--KPTEVISSD-FCRGLMSDDE------------NDQTVTGAAFDVLHYIVSKRLQL   72 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHS--CGGGEEEHH-HHHHHHCSST------------TCGGGHHHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHc--cCCeEEccH-HHHHHhcCcc------------cchhhHHHHHHHHHHHHHHHHhC
Confidence            57789999999999999999865  245556553 4443333211            111111111    1112222222


Q ss_pred             cccCCcceEEEeCCCCCH---HHHHHHHh-hCCCceEEEEccCHHHHHHHHhcCC
Q 024067          138 GYYRGESGFILDGIPRTR---IQAEILDQ-IVDVDLVINFKSIEDQLVKRNLESE  188 (273)
Q Consensus       138 ~~~~~~~g~IlDg~P~~~---~qa~~l~~-~~~~d~vI~L~~~~e~l~~Rl~~R~  188 (273)
                           +...++|......   .|.-.+.. +...-.+++||-|...+-.|...|.
T Consensus        73 -----g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~  122 (171)
T 4gp7_A           73 -----GKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT  122 (171)
T ss_dssp             -----TCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred             -----CCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence                 3456777654432   22222322 2222358889999999988887775

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=97.52  E-value=4.4e-05  Score=72.57  Aligned_cols=35  Identities=14%  Similarity=0.059  Sum_probs=30.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCC-------CeechhH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEV-------PHISMGS   96 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~-------~~is~~d   96 (273)
                      .++.|+|+|++||||||+++.|+++++.       .+++.|+
T Consensus       394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~  435 (511)
T 1g8f_A          394 QGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN  435 (511)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred             cceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence            5688999999999999999999999986       5677655

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=97.50  E-value=4.1e-05  Score=70.52  Aligned_cols=34  Identities=24%  Similarity=0.216  Sum_probs=30.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS   96 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~d   96 (273)
                      .+.|+|+||+||||||++..|++.++..+||+|.
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds   35 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS   35 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence            3578899999999999999999999999998876

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.49  E-value=9.3e-05  Score=59.89  Aligned_cols=38  Identities=24%  Similarity=0.271  Sum_probs=30.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh----C--CCeechhHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL----E--VPHISMGSLVR   99 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~----g--~~~is~~dllr   99 (273)
                      .+..++|+||||+||||+++.++..+    |  +.+++..+++.
T Consensus        37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~   80 (180)
T 3ec2_A           37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIF   80 (180)
T ss_dssp             GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence            36788999999999999999999876    3  45666666554

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.47  E-value=7.6e-05  Score=63.97  Aligned_cols=31  Identities=23%  Similarity=0.480  Sum_probs=26.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      .-++|+||||+||||+++.|+..++.+++.+
T Consensus        46 ~~vll~G~~GtGKT~la~~la~~~~~~~~~i   76 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI   76 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence            3588999999999999999999998766543

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.45  E-value=8.6e-05  Score=63.38  Aligned_cols=32  Identities=28%  Similarity=0.488  Sum_probs=27.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      +..++|.||||+|||++++.|++.++.+++.+
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~~   70 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVATEAQVPFLAM   70 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence            45688999999999999999999999876643

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.45  E-value=6.9e-05  Score=69.77  Aligned_cols=32  Identities=16%  Similarity=0.257  Sum_probs=28.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      +.-|+|.||||+|||++|+.+|.+++++++.+
T Consensus       215 prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v  246 (434)
T 4b4t_M          215 PKGALMYGPPGTGKTLLARACAAQTNATFLKL  246 (434)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCeeEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence            55688999999999999999999999887654

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.44  E-value=8.3e-05  Score=66.00  Aligned_cols=37  Identities=27%  Similarity=0.240  Sum_probs=31.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC-------CCeechhHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-------VPHISMGSL   97 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g-------~~~is~~dl   97 (273)
                      .++.+|.|+|++||||||+++.|+..++       +.+|++|+.
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~  121 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF  121 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence            4678999999999999999999999876       556666654

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.42  E-value=8e-05  Score=69.24  Aligned_cols=32  Identities=19%  Similarity=0.303  Sum_probs=28.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      +.-|+|.||||+|||++|+.+|..++++++.+
T Consensus       206 prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v  237 (428)
T 4b4t_K          206 PRGVLLYGPPGTGKTMLVKAVANSTKAAFIRV  237 (428)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence            44588999999999999999999999887664

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.41  E-value=8.4e-05  Score=69.25  Aligned_cols=32  Identities=22%  Similarity=0.279  Sum_probs=28.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      +.-|+|.||||+|||++|+.||..+|++++.+
T Consensus       215 prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v  246 (437)
T 4b4t_L          215 PKGVLLYGPPGTGKTLLAKAVAATIGANFIFS  246 (437)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            45688999999999999999999999887654

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=97.40  E-value=0.00011  Score=65.35  Aligned_cols=33  Identities=21%  Similarity=0.269  Sum_probs=28.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      .+..++|.||||+|||++|+.+++.++.+++.+
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v   82 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSV   82 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEE
Confidence            356799999999999999999999998776543

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.39  E-value=7.9e-05  Score=68.66  Aligned_cols=32  Identities=22%  Similarity=0.342  Sum_probs=28.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      +.-|+|.||||+|||++|+.+|.+++++++++
T Consensus       182 prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v  213 (405)
T 4b4t_J          182 PKGVILYGPPGTGKTLLARAVAHHTDCKFIRV  213 (405)
T ss_dssp             CCCEEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCceEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence            34588999999999999999999999887664

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=97.39  E-value=0.00011  Score=66.35  Aligned_cols=33  Identities=33%  Similarity=0.537  Sum_probs=29.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      .+..|+|.||||+|||++|+.|++.++.+++.+
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~   82 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMA   82 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEe
Confidence            345788999999999999999999999888765

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=97.37  E-value=9.3e-05  Score=69.09  Aligned_cols=33  Identities=33%  Similarity=0.469  Sum_probs=29.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechh
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG   95 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~   95 (273)
                      +..|+|+||||+||||+++.||+.++++++.++
T Consensus        50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~   82 (444)
T 1g41_A           50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVE   82 (444)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHcCCCceeec
Confidence            456999999999999999999999999887764

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.36  E-value=0.00011  Score=64.91  Aligned_cols=39  Identities=21%  Similarity=0.264  Sum_probs=30.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeec--hhHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS--MGSLVRQ  100 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is--~~dllr~  100 (273)
                      .+..|+|.||||+||||+++.|++.++.+++.  ..+++..
T Consensus        48 ~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~   88 (301)
T 3cf0_A           48 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM   88 (301)
T ss_dssp             CCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred             CCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence            35578899999999999999999999876654  4455543

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.36  E-value=0.00011  Score=64.18  Aligned_cols=32  Identities=19%  Similarity=0.304  Sum_probs=27.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS   93 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is   93 (273)
                      .+..++|.||||+||||+++.|++.++.+++.
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~   84 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATECSATFLN   84 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEE
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence            35678999999999999999999999876654

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.35  E-value=0.0001  Score=65.05  Aligned_cols=39  Identities=13%  Similarity=0.055  Sum_probs=31.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC-------CCee-chhHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-------VPHI-SMGSLVR   99 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g-------~~~i-s~~dllr   99 (273)
                      .++.+|.|.|++||||||+++.|++.++       ...+ +.|+++.
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~   75 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYL   75 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccC
Confidence            4678999999999999999999999885       3445 7777653

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.35  E-value=0.00012  Score=63.83  Aligned_cols=29  Identities=28%  Similarity=0.407  Sum_probs=25.4

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           66 WVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        66 Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      ++|+||||+||||+++.|+..++...+.+
T Consensus        47 vlL~Gp~GtGKTtLakala~~~~~~~i~i   75 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANESGLNFISV   75 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred             EEEECCCCCcHHHHHHHHHHHcCCCEEEE
Confidence            89999999999999999999998655543

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.34  E-value=0.00012  Score=63.45  Aligned_cols=32  Identities=22%  Similarity=0.320  Sum_probs=27.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      +..++|.||||+||||+++.|++.++.+++.+
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v   82 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATETNATFIRV   82 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            45688999999999999999999998876543

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=97.34  E-value=0.00016  Score=62.46  Aligned_cols=33  Identities=24%  Similarity=0.305  Sum_probs=29.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      .+..++|.||||+|||++|+.+++.++.+++.+
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i   95 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI   95 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            456789999999999999999999999887654

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=97.34  E-value=0.00011  Score=61.32  Aligned_cols=34  Identities=26%  Similarity=0.233  Sum_probs=29.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS   96 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~d   96 (273)
                      .+..|+|+||+||||||+|..|+++.+ ..|+.|.
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs   66 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADDR   66 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence            367799999999999999999999877 8887654

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=97.29  E-value=0.00017  Score=64.45  Aligned_cols=30  Identities=20%  Similarity=0.239  Sum_probs=25.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh-CCCee
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLL-EVPHI   92 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~-g~~~i   92 (273)
                      +.-|+|.||||+|||++|+.+++.+ +.+++
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~   75 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATEANNSTFF   75 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHTTSCEEE
T ss_pred             CceEEEECCCCccHHHHHHHHHHHcCCCcEE
Confidence            4678899999999999999999998 65554

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.28  E-value=0.00012  Score=68.41  Aligned_cols=32  Identities=22%  Similarity=0.339  Sum_probs=28.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      +.-|+|.||||+|||++|+.||.+++++++.+
T Consensus       243 prGILLyGPPGTGKTlLAkAiA~e~~~~fi~v  274 (467)
T 4b4t_H          243 PKGILLYGPPGTGKTLCARAVANRTDATFIRV  274 (467)
T ss_dssp             CSEEEECSCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCceEeeCCCCCcHHHHHHHHHhccCCCeEEE
Confidence            55688999999999999999999999887654

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.26  E-value=0.00016  Score=67.10  Aligned_cols=32  Identities=19%  Similarity=0.339  Sum_probs=28.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      +.-|+|.||||+|||++|+.||.+++++++.+
T Consensus       216 prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v  247 (437)
T 4b4t_I          216 PKGVILYGAPGTGKTLLAKAVANQTSATFLRI  247 (437)
T ss_dssp             CSEEEEESSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCCceECCCCchHHHHHHHHHHHhCCCEEEE
Confidence            45688999999999999999999999887654

>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}

Probab=97.25  E-value=0.0039  Score=54.58  Aligned_cols=170  Identities=9%  Similarity=-0.019  Sum_probs=91.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccc
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY  140 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~  140 (273)
                      ..++.|+|.|..||||+++.++|.+.++=..+.+-     .+..  +..++      .+..        .+......- -
T Consensus        73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~-----a~~~--Pt~eE------~~~~--------ylwR~~~~l-P  130 (289)
T 3rhf_A           73 PKRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLT-----AFKA--PTDEE------KSHD--------FLWRIEKQV-P  130 (289)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEE-----ECCS--CCHHH------HTSC--------TTHHHHTTC-C
T ss_pred             CCcEEEEEECCCCCChHHHHHHHHHhcCcCceEEE-----ECCC--CChhh------hcCC--------HHHHHHHhC-C
Confidence            36899999999999999999999999954333221     0000  00000      0000        011111110 0


Q ss_pred             CCcceEEEeCCCCC-------------------HHHHHHHHhh----CCCceEEEEccCHHHHHHHHhcCCcCCCccccc
Q 024067          141 RGESGFILDGIPRT-------------------RIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFL  197 (273)
Q Consensus       141 ~~~~g~IlDg~P~~-------------------~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y  197 (273)
                      ..+.-.|+|+.-.+                   ..+...++..    +..-+-++|+++.++..+|+..|..++...  +
T Consensus       131 ~~G~I~IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~R~~dP~k~--W  208 (289)
T 3rhf_A          131 AAGMVGVFDRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIARLDDPSKH--W  208 (289)
T ss_dssp             CTTCEEEEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHHHHHCGGGG--G
T ss_pred             CCCeEEEEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHHHhcCCccc--c
Confidence            12333455532111                   1122223221    234467999999999999999887654211  1


Q ss_pred             ccCCCCCCCCCcHHHHHHH--HHHHHHhhHHHHHHHHhc----CcEEEEeCCCCh---hHHHHHHHHHHHhcCCCCCC
Q 024067          198 RLGGARFSAADAASAWKEK--FRIYAEQGKSLEDYYSKQ----RKLLNFQVAAAP---GETWQGLLSALHLQHMNAVS  266 (273)
Q Consensus       198 ~~~~~~~~~~d~~e~~~~r--l~~y~~~~~~l~~~y~~~----~~~~~id~~~s~---~ev~~~I~~~l~~~~~~~~~  266 (273)
                               .-++..++++  ...|.+..   .+.+...    .-|+.|+++.--   -.|.+.|++.|...++.-+.
T Consensus       209 ---------K~s~~D~~~r~~wd~Y~~a~---e~ml~~T~t~~APW~VV~addK~~arl~v~~~ll~~Le~~~~~~P~  274 (289)
T 3rhf_A          209 ---------KYSRGDLAERAYWDDYMDAY---SVAFEKTSTEIAPWHVVPANKKWYARIAVQQLLLDALGGLQLDWPK  274 (289)
T ss_dssp             ---------GCCHHHHHHHTTHHHHHHHH---HHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred             ---------cCCHHHHHHHHHHHHHHHHH---HHHHHHhCCCCCCeEEEeCCCHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence                     1123334433  44554443   3344432    359999987643   23778888888877664443

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.24  E-value=0.00017  Score=62.86  Aligned_cols=31  Identities=35%  Similarity=0.490  Sum_probs=27.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHIS   93 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is   93 (273)
                      +..++|.||||+|||++++.|++.++.+++.
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~   80 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKLANAPFIK   80 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            4568899999999999999999999876654

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=97.24  E-value=0.0031  Score=62.35  Aligned_cols=165  Identities=8%  Similarity=0.032  Sum_probs=89.4

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCC-CeechhHHHHHHccCC----Ch-----HHHHHHHHHHCCCCCCHH----
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEV-PHISMGSLVRQELSPR----SA-----LYKQIANAVNEGKLVPED----  125 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~-~~is~~dllr~~~~~~----~~-----~g~~i~~~l~~g~~~~~~----  125 (273)
                      +..+..|+|+||   ||+|+.++|.+.+.- ..+++...-|. ..++    ..     .-+++...+.+|..+...    
T Consensus       528 ~~~~r~vvl~GP---~K~tl~~~L~~~~~~~~~~~vs~TTR~-~r~gE~~G~dY~Fv~s~~~f~~~i~~~~flE~~~~~g  603 (721)
T 2xkx_A          528 VHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRP-KREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNS  603 (721)
T ss_pred             CCCCCEEEEECC---CHHHHHHHHHHhCccceeecccccccC-CCCCccCCceeEEecCHHHHHHHHhcCCceEEEEECC
Confidence            345677889998   499999999998731 12222222221 1111    00     134556666666654321    


Q ss_pred             ----HHHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCC
Q 024067          126 ----VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGG  201 (273)
Q Consensus       126 ----~~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~  201 (273)
                          +-..-+.+.+.+     ++.+|||.-+....+....  ...| ++||+..+.-..++++.+|..            
T Consensus       604 ~~YGt~~~~v~~~~~~-----g~~~ildi~~~~~~~l~~~--~~~p-~~ifi~pps~~~L~~l~~R~t------------  663 (721)
T 2xkx_A          604 HLYGTSVQSVREVAEQ-----GKHCILDVSANAVRRLQAA--HLHP-IAIFIRPRSLENVLEINKRIT------------  663 (721)
T ss_pred             ccceeeHHHHHHHHHC-----CCcEEEeCCHHHHHHHHhc--ccCC-EEEEEeCCcHHHHHHHhccCC------------
Confidence                223334455544     4779999754332222211  1234 788888765444455666542            


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcCC
Q 024067          202 ARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHM  262 (273)
Q Consensus       202 ~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~~  262 (273)
                              ++.+++|+....+...   .|....+ .+ |+ +.+.++.+++|.++|.....
T Consensus       664 --------~~~~~~rl~~a~~~e~---~~~~~fd-~v-i~-Nd~l~~a~~~l~~~i~~~~~  710 (721)
T 2xkx_A          664 --------EEQARKAFDRATKLEQ---EFTECFS-AI-VE-GDSFEEIYHKVKRVIEDLSG  710 (721)
T ss_pred             --------HHHHHHHHHHHHHHHH---hccccCc-EE-EE-CcCHHHHHHHHHHHHHhccC
Confidence                    2356777776532111   1111112 23 44 35899999999999986544

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.24  E-value=0.0002  Score=62.81  Aligned_cols=26  Identities=27%  Similarity=0.438  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+..++|.||||+|||++++.+++.+
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            45679999999999999999999988

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.21  E-value=0.00018  Score=58.81  Aligned_cols=27  Identities=22%  Similarity=0.471  Sum_probs=24.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVP   90 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~   90 (273)
                      ++++|+||+||||||+.+.|+..+++.
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~l~i~   27 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            468899999999999999999998743

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=97.21  E-value=0.0002  Score=65.02  Aligned_cols=32  Identities=31%  Similarity=0.449  Sum_probs=28.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      +..|+|.||||+||||+|+.|++.++.+++.+
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~  103 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAIS  103 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence            45688999999999999999999998877654

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.20  E-value=0.00024  Score=56.74  Aligned_cols=26  Identities=35%  Similarity=0.540  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+..++|.|+||+||||+++.+++.+
T Consensus        42 ~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           42 TKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHH
Confidence            34568899999999999999999986

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=97.18  E-value=0.0002  Score=64.81  Aligned_cols=32  Identities=22%  Similarity=0.287  Sum_probs=27.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      +..|+|.||||+|||++|+.|++.++.+++.+
T Consensus        84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~v  115 (355)
T 2qp9_X           84 TSGILLYGPPGTGKSYLAKAVATEANSTFFSV  115 (355)
T ss_dssp             CCCEEEECSTTSCHHHHHHHHHHHHTCEEEEE
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence            44588999999999999999999999876543

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.15  E-value=0.00024  Score=60.64  Aligned_cols=29  Identities=34%  Similarity=0.521  Sum_probs=25.4

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           66 WVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        66 Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      ++|+||||+||||+++.|+..++...+.+
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~~   80 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEARVPFITA   80 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence            88999999999999999999987665543

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.14  E-value=0.00021  Score=57.06  Aligned_cols=25  Identities=32%  Similarity=0.525  Sum_probs=22.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      +..++|.|+||+||||+++.+++.+
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            4567899999999999999999987

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=97.14  E-value=0.00012  Score=62.94  Aligned_cols=29  Identities=34%  Similarity=0.566  Sum_probs=25.8

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           66 WVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        66 Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      ++|.||||+|||++++.|++.++.+++.+
T Consensus        47 vll~G~~GtGKT~la~~la~~~~~~~~~v   75 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAGEAHVPFFSM   75 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHHHHTCCCCCC
T ss_pred             EEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence            77999999999999999999998776654

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=97.12  E-value=0.0012  Score=58.22  Aligned_cols=164  Identities=12%  Similarity=0.048  Sum_probs=87.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCe-echhHHHHHHccCCC---------hHHHHHHHHHHCCCCCCHH-----
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPH-ISMGSLVRQELSPRS---------ALYKQIANAVNEGKLVPED-----  125 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~-is~~dllr~~~~~~~---------~~g~~i~~~l~~g~~~~~~-----  125 (273)
                      .++.-|||+||   ||+|+.++|.+++.-.+ .++..--|. ..++.         ..-+.+...+.+|..+...     
T Consensus        98 ~~~RpvVl~Gp---~K~tl~~~Ll~~~p~~f~~sVs~TTR~-pR~gE~dG~dY~Fv~s~e~fe~~i~~~~flE~a~~~gn  173 (292)
T 3tvt_A           98 NYTRPVIILGP---LKDRINDDLISEYPDKFGSCVPHTTRP-KREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDN  173 (292)
T ss_dssp             SSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSC-CCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTE
T ss_pred             CCCCeEEEeCC---CHHHHHHHHHHhChhhccccccCCccC-CcCCccCCccccccCCHHHHHHHHhcCceEEEEEEccc
Confidence            45566888888   59999999999885322 222111111 11110         0124456666666544321     


Q ss_pred             ---HHHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccC-HHHHHHHHhcCCcCCCcccccccCC
Q 024067          126 ---VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSI-EDQLVKRNLESEAFSPHKEFLRLGG  201 (273)
Q Consensus       126 ---~~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~-~e~l~~Rl~~R~~~~~~~~~y~~~~  201 (273)
                         +...-+.+.+..     ++.+|||--+....|..   .....-++||+..| .+++.+|+.+|.             
T Consensus       174 ~YGT~~~~V~~~~~~-----gk~viLdid~qg~~~lk---~~~~~pi~IFI~PpS~e~L~~r~~~r~-------------  232 (292)
T 3tvt_A          174 LYGTSVASVREVAEK-----GKHCILDVSGNAIKRLQ---VAQLYPVAVFIKPKSVDSVMEMNRRMT-------------  232 (292)
T ss_dssp             EEEEEHHHHHHHHHH-----TCEEEECCCTHHHHHHH---HTTCCCEEEEECCSCHHHHHHTCTTSC-------------
T ss_pred             eeEEehHHHHHHHHc-----CCcEEEeccchhhhhcc---cccccceEEEEECCCHHHHHHHHhCCC-------------
Confidence               112344455554     47799997764444432   22222267777765 566665554432             


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcCCC
Q 024067          202 ARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHMN  263 (273)
Q Consensus       202 ~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~~~  263 (273)
                           +++.+.+.+|+...+.       .|...-..+ |. +.+.++.+++|.++|......
T Consensus       233 -----~e~~~~~~~r~~k~e~-------e~~~~fD~v-Iv-Nddle~a~~~l~~iI~~e~~~  280 (292)
T 3tvt_A          233 -----EEQAKKTYERAIKMEQ-------EFGEYFTGV-VQ-GDTIEEIYSKVKSMIWSQSGP  280 (292)
T ss_dssp             -----TTHHHHHHHHHHHHHH-------HHTTTCSEE-EC-CSSHHHHHHHHHHHHHHHTCS
T ss_pred             -----chhHHHHHHHHHHHHH-------hhhhhCCEE-EE-CcCHHHHHHHHHHHHHHhhCC
Confidence                 2334444444433221       122211123 33 468999999999999877654

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.07  E-value=0.00036  Score=62.43  Aligned_cols=29  Identities=24%  Similarity=0.275  Sum_probs=25.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCe
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPH   91 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~   91 (273)
                      +..++|+||||+||||+++.|+..++..+
T Consensus        51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~   79 (334)
T 1in4_A           51 LDHVLLAGPPGLGKTTLAHIIASELQTNI   79 (334)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence            35688999999999999999999997754

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=97.07  E-value=0.00029  Score=63.72  Aligned_cols=32  Identities=19%  Similarity=0.260  Sum_probs=27.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS   93 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is   93 (273)
                      .+..|+|.||||+|||++++.|++.++.+++.
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~  147 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFS  147 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence            35678999999999999999999999877654

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.07  E-value=0.00044  Score=56.77  Aligned_cols=36  Identities=25%  Similarity=0.237  Sum_probs=28.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh---CC--CeechhHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLL---EV--PHISMGSLVR   99 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~---g~--~~is~~dllr   99 (273)
                      ..++|.|+||+||||+++.|+..+   +.  .+++..+++.
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~   95 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFR   95 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHH
Confidence            678899999999999999999977   33  3456655543

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.06  E-value=0.00028  Score=55.88  Aligned_cols=26  Identities=15%  Similarity=0.132  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+..++|+|++|+||||+++.++..+
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            45678899999999999999999987

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=97.02  E-value=0.00041  Score=61.63  Aligned_cols=32  Identities=16%  Similarity=0.119  Sum_probs=28.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      +..|+|.|+||+|||++++.+++.++.+++.+
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~   86 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYEMSANIKTT   86 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence            34589999999999999999999999887654

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=97.02  E-value=0.00038  Score=65.04  Aligned_cols=32  Identities=34%  Similarity=0.493  Sum_probs=27.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC--CCeech
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLE--VPHISM   94 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g--~~~is~   94 (273)
                      +..++|.||||+|||++|+.||+.++  ++++.+
T Consensus        63 ~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~   96 (456)
T 2c9o_A           63 GRAVLLAGPPGTGKTALALAIAQELGSKVPFCPM   96 (456)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEE
T ss_pred             CCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEE
Confidence            45688999999999999999999998  666554

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.00  E-value=0.0004  Score=60.29  Aligned_cols=29  Identities=34%  Similarity=0.521  Sum_probs=25.5

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           66 WVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        66 Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      ++|+||||+||||+++.|+..++...+.+
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~~  104 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEARVPFITA  104 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEECCCcChHHHHHHHHHHHcCCCEEEe
Confidence            88999999999999999999987665544

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.99  E-value=0.00044  Score=57.66  Aligned_cols=36  Identities=11%  Similarity=-0.062  Sum_probs=28.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC-----CCeechhHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSL   97 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g-----~~~is~~dl   97 (273)
                      .+..++|.||||+||||+++.+++.++     +.+++..++
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~   91 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH   91 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence            456789999999999999999999874     345555443

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.98  E-value=0.0036  Score=58.30  Aligned_cols=26  Identities=15%  Similarity=0.318  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      +|..|+++|++||||||++..||..+
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l  124 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYF  124 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence            57899999999999999999999876

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.93  E-value=0.00059  Score=62.41  Aligned_cols=32  Identities=19%  Similarity=0.248  Sum_probs=28.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS   93 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is   93 (273)
                      .+..|+|.|||||||||+++.|+..++..++.
T Consensus       168 ~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~  199 (377)
T 1svm_A          168 KKRYWLFKGPIDSGKTTLAAALLELCGGKALN  199 (377)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence            56789999999999999999999998776655

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=96.93  E-value=0.00053  Score=62.56  Aligned_cols=32  Identities=19%  Similarity=0.319  Sum_probs=28.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      +..|+|.||||+|||++++.|++.++.+++.+
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~v  179 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNI  179 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence            56799999999999999999999998876643

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.92  E-value=0.00051  Score=53.75  Aligned_cols=25  Identities=24%  Similarity=0.288  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      +..|+|.|+||+|||++|+.|++..
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHhC
Confidence            3458899999999999999999875

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=96.92  E-value=0.00054  Score=64.53  Aligned_cols=30  Identities=27%  Similarity=0.495  Sum_probs=26.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      -|+|+||||+||||+++.|+...+.+++.+
T Consensus        51 gvLL~GppGtGKT~Laraia~~~~~~f~~i   80 (476)
T 2ce7_A           51 GILLVGPPGTGKTLLARAVAGEANVPFFHI   80 (476)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCeeeC
Confidence            388999999999999999999999887654

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=96.92  E-value=0.00046  Score=57.95  Aligned_cols=26  Identities=23%  Similarity=0.236  Sum_probs=23.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++..++|+||+||||||+.+.|+..+
T Consensus        22 ~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           22 NIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            56789999999999999999999977

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=96.89  E-value=0.00048  Score=64.21  Aligned_cols=37  Identities=27%  Similarity=0.302  Sum_probs=27.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh-CCCe--echhHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLL-EVPH--ISMGSLVR   99 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~-g~~~--is~~dllr   99 (273)
                      +.-|+|.||||+|||++|+.|++.+ +.++  ++..+++.
T Consensus       167 ~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~  206 (444)
T 2zan_A          167 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS  206 (444)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC----
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHh
Confidence            4578899999999999999999998 6554  44445543

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.88  E-value=0.0006  Score=56.50  Aligned_cols=28  Identities=25%  Similarity=0.211  Sum_probs=24.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      .++..++|+||+||||||+.+.|+..+.
T Consensus        18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           18 AVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4577899999999999999999998874

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.86  E-value=0.00062  Score=64.64  Aligned_cols=32  Identities=22%  Similarity=0.203  Sum_probs=28.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      +..++|.||||+||||+++.|++.+|++++.+
T Consensus        77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~i  108 (516)
T 1sxj_A           77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ  108 (516)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            46789999999999999999999999877643

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.84  E-value=0.00059  Score=57.19  Aligned_cols=31  Identities=16%  Similarity=0.188  Sum_probs=25.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHIS   93 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is   93 (273)
                      ...++|.||||+||||+|..|++.++-..++
T Consensus        58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~~   88 (212)
T 1tue_A           58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVIS   88 (212)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence            3468999999999999999999998654443

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.84  E-value=0.00051  Score=68.59  Aligned_cols=32  Identities=19%  Similarity=0.209  Sum_probs=28.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      |.-|+|.||||+|||++|+.+|+++|++++.+
T Consensus       238 p~GILL~GPPGTGKT~LAraiA~elg~~~~~v  269 (806)
T 3cf2_A          238 PRGILLYGPPGTGKTLIARAVANETGAFFFLI  269 (806)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHTTTTCEEEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCeEEEE
Confidence            56689999999999999999999999877654

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.84  E-value=0.00075  Score=60.06  Aligned_cols=27  Identities=26%  Similarity=0.132  Sum_probs=24.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .++..|.|+|++||||||+++.|+..+
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gll  114 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQALL  114 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence            468899999999999999999999976

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.78  E-value=0.00085  Score=54.42  Aligned_cols=26  Identities=12%  Similarity=0.139  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++..|.|.|++||||||++..|+..+
T Consensus         3 ~~~~i~i~G~sGsGKTTl~~~L~~~l   28 (169)
T 1xjc_A            3 AMNVWQVVGYKHSGKTTLMEKWVAAA   28 (169)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence            45678899999999999999999876

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.78  E-value=0.00056  Score=56.07  Aligned_cols=28  Identities=18%  Similarity=0.075  Sum_probs=23.5

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCC--eech
Q 024067           66 WVLIGDPGVKKHVYADNLSKLLEVP--HISM   94 (273)
Q Consensus        66 Ivi~G~pGSGKsT~a~~La~~~g~~--~is~   94 (273)
                      |+|+|++||||||+|..|++. +.+  ||.+
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT   31 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD-APQVLYIAT   31 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS-CSSEEEEEC
T ss_pred             EEEECCCCCcHHHHHHHHHhc-CCCeEEEec
Confidence            789999999999999999987 654  4444

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.76  E-value=0.00088  Score=59.28  Aligned_cols=37  Identities=11%  Similarity=-0.046  Sum_probs=29.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh---CC--CeechhHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL---EV--PHISMGSLV   98 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~---g~--~~is~~dll   98 (273)
                      .+..++|.||||+||||+++.+++.+   +.  .+++..++.
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~   77 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA   77 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH
Confidence            34568899999999999999999987   54  456665554

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.76  E-value=0.00097  Score=58.28  Aligned_cols=24  Identities=29%  Similarity=0.470  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ..++|.||||+||||+++.|++.+
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHH
Confidence            368899999999999999999987

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.75  E-value=0.0011  Score=62.86  Aligned_cols=29  Identities=34%  Similarity=0.521  Sum_probs=25.8

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           66 WVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        66 Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      ++|+||||+||||+++.|+...+.+++.+
T Consensus        67 vLL~GppGtGKTtLaraIa~~~~~~~i~i   95 (499)
T 2dhr_A           67 VLLVGPPGVGKTHLARAVAGEARVPFITA   95 (499)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence            89999999999999999999998766543

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.70  E-value=0.00099  Score=55.01  Aligned_cols=26  Identities=31%  Similarity=0.355  Sum_probs=23.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEV   89 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~   89 (273)
                      ..++|.|+||+||||+++.+++.++.
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~~~~~   71 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAKGLNC   71 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            47889999999999999999998854

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=96.70  E-value=0.00094  Score=58.73  Aligned_cols=30  Identities=27%  Similarity=0.317  Sum_probs=26.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCee
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHI   92 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~i   92 (273)
                      +..++|.|+||+||||+++.+++.++.+++
T Consensus        38 ~~~vll~G~~GtGKT~la~~i~~~~~~~~~   67 (324)
T 1hqc_A           38 LEHLLLFGPPGLGKTTLAHVIAHELGVNLR   67 (324)
T ss_dssp             CCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            346889999999999999999999987764

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.69  E-value=0.00091  Score=54.62  Aligned_cols=23  Identities=30%  Similarity=0.417  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .++|.|+||+||||+++.+++.+
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            38999999999999999999976

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.67  E-value=0.00097  Score=59.79  Aligned_cols=27  Identities=26%  Similarity=0.420  Sum_probs=24.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEV   89 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~   89 (273)
                      +..++|.||||+|||++++.+++.++.
T Consensus        70 ~~~vLl~GppGtGKT~la~~la~~l~~   96 (368)
T 3uk6_A           70 GRAVLIAGQPGTGKTAIAMGMAQALGP   96 (368)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            468999999999999999999999974

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=96.67  E-value=0.0011  Score=61.94  Aligned_cols=31  Identities=19%  Similarity=0.330  Sum_probs=27.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      ..++|.||||+||||+++.|++.++.+++.+
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l   81 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARYANADVERI   81 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence            5688999999999999999999998876654

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.67  E-value=0.001  Score=63.66  Aligned_cols=32  Identities=31%  Similarity=0.466  Sum_probs=27.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS   93 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is   93 (273)
                      ++..++|+||||+||||+++.|+..++.+++.
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~  138 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVR  138 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEE
Confidence            46689999999999999999999999766543

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.66  E-value=0.00035  Score=54.57  Aligned_cols=25  Identities=20%  Similarity=0.116  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhC
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      ..|+|.|+||+|||++|+.|++..+
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~~~   52 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKNGT   52 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred             CcEEEECCCCccHHHHHHHHHHhCC
Confidence            3588999999999999999998776

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=96.64  E-value=0.008  Score=53.28  Aligned_cols=146  Identities=12%  Similarity=0.091  Sum_probs=76.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~  141 (273)
                      .+.-|||+||   ||+|+.++|.+.+.-.+-..-. +.          ..    +.+|+.++.+.+..+    +.+    
T Consensus       144 ~~RPvVl~GP---~k~~l~~~L~~~~P~~F~~~v~-~~----------r~----i~~~~fis~~~V~~v----l~~----  197 (308)
T 3kfv_A          144 FKRPVVILGP---VADIAMQKLTAEMPDQFEIAET-VS----------RT----DSPSKIIKLDTVRVI----AEK----  197 (308)
T ss_dssp             SCCCEEEEST---THHHHHHHHHHHCTTTEEECCC-C----------------------CCCHHHHHHH----HHT----
T ss_pred             CCCeEEEeCc---cHHHHHHHHHHhCccccccccc-cc----------cc----ccCCCeecHHHHHHH----HHC----
Confidence            3444788999   7999999999987433211100 00          01    345666655444444    443    


Q ss_pred             CcceEEEeCCCCCHHHHHHHHhhCCCceEEEEcc-CHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHH
Q 024067          142 GESGFILDGIPRTRIQAEILDQIVDVDLVINFKS-IEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIY  220 (273)
Q Consensus       142 ~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~-~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y  220 (273)
                       ++.+|||--+....|...  ....| ++||+.. +.++|.+| .+|..                 .++++.+++++...
T Consensus       198 -Gk~~ILDId~QGa~~lk~--~~~~p-i~IFI~PPS~eeL~~r-r~R~~-----------------~esee~~~r~~~aa  255 (308)
T 3kfv_A          198 -DKHALLDVTPSAIERLNY--VQYYP-IVVFFIPESRPALKAL-RQWLA-----------------PASRRSTRRLYAQA  255 (308)
T ss_dssp             -TCEEEECCCHHHHHHHHH--TTCCC-EEEEEEESCHHHHHHH-HHHHS-----------------TTCCCCHHHHHHHH
T ss_pred             -CCcEEEEECHHHHHHHHh--cCCCC-EEEEEeCCCHHHHHHH-HhcCC-----------------CCCHHHHHHHHHHH
Confidence             588999977644444332  12345 5666665 45666654 44432                 01122445554443


Q ss_pred             HHhhHHHHHHH-HhcCcEEEEeCCCChhHHHHHHHHHHHhcC
Q 024067          221 AEQGKSLEDYY-SKQRKLLNFQVAAAPGETWQGLLSALHLQH  261 (273)
Q Consensus       221 ~~~~~~l~~~y-~~~~~~~~id~~~s~~ev~~~I~~~l~~~~  261 (273)
                      .+    ++..| ...+.++.+|  .+.++.+++|.++|....
T Consensus       256 ~e----iE~~~~~~FD~vI~VN--Ddle~A~~~L~~iI~~~~  291 (308)
T 3kfv_A          256 QK----LRKHSSHLFTATIPLN--GTSDTWYQELKAIIREQQ  291 (308)
T ss_dssp             HH----HHHHHGGGCSEEEEEC--SSSTHHHHHHHHHHHHHT
T ss_pred             HH----HHHhhhccCcEEEEcC--CCHHHHHHHHHHHHHHhc
Confidence            22    22223 2234333244  667889999999887654

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=96.63  E-value=0.00063  Score=60.77  Aligned_cols=27  Identities=7%  Similarity=0.124  Sum_probs=24.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .++..++|.||||+|||++++.+++++
T Consensus        43 ~~~~~lli~GpPGTGKT~~v~~v~~~L   69 (318)
T 3te6_A           43 SQNKLFYITNADDSTKFQLVNDVMDEL   69 (318)
T ss_dssp             TCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            357789999999999999999999988

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=96.63  E-value=0.00075  Score=59.88  Aligned_cols=29  Identities=24%  Similarity=0.408  Sum_probs=25.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCee
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHI   92 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~i   92 (273)
                      ..++|.||||+|||++++.|++.++.+++
T Consensus        47 ~~vll~G~pGtGKT~la~~la~~~~~~~~   75 (331)
T 2r44_A           47 GHILLEGVPGLAKTLSVNTLAKTMDLDFH   75 (331)
T ss_dssp             CCEEEESCCCHHHHHHHHHHHHHTTCCEE
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence            36889999999999999999999987654

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.63  E-value=0.0012  Score=54.01  Aligned_cols=25  Identities=16%  Similarity=0.052  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      +..++++|+|||||||++.+++..+
T Consensus         3 g~i~vi~G~~gsGKTT~ll~~~~~~   27 (184)
T 2orw_A            3 GKLTVITGPMYSGKTTELLSFVEIY   27 (184)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHH
Confidence            5678899999999999998887765

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=96.62  E-value=0.0015  Score=52.41  Aligned_cols=27  Identities=26%  Similarity=0.369  Sum_probs=23.3

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      +-+..+|+|+|++|+||||+..+|...
T Consensus         4 ~~~~~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            4 HMKSYEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            335679999999999999999999863

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.60  E-value=0.0019  Score=52.01  Aligned_cols=27  Identities=26%  Similarity=0.300  Sum_probs=24.0

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ..+..+|+|+|.+|+||||+..+|...
T Consensus         4 ~~~~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            4 KKSSYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             CCSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhC
Confidence            456789999999999999999999875

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.58  E-value=0.0012  Score=54.75  Aligned_cols=26  Identities=19%  Similarity=0.221  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-.+.|+||+||||||+++.|+..+
T Consensus        24 ~G~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           24 TQAITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            67889999999999999999999754

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.57  E-value=0.0013  Score=59.08  Aligned_cols=26  Identities=12%  Similarity=0.147  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+..++|.||||+||||+++.+++.+
T Consensus        44 ~~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           44 VKFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            34588999999999999999999987

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=96.56  E-value=0.0017  Score=60.87  Aligned_cols=25  Identities=40%  Similarity=0.603  Sum_probs=22.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ...++|+|+||+|||++++.|++.+
T Consensus       201 ~~~~LL~G~pG~GKT~la~~la~~l  225 (468)
T 3pxg_A          201 KNNPVLIGEPGVGKTAIAEGLAQQI  225 (468)
T ss_dssp             SCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHHH
Confidence            4467899999999999999999997

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.56  E-value=0.00089  Score=59.95  Aligned_cols=26  Identities=23%  Similarity=0.203  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+..++|.||||+||||+++.+++.+
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            45678899999999999999999987

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.56  E-value=0.0015  Score=54.21  Aligned_cols=26  Identities=23%  Similarity=0.417  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++..++|+|+|||||||+++.|+..+
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~l~~~~   47 (235)
T 2w0m_A           22 QGFFIALTGEPGTGKTIFSLHFIAKG   47 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            56788999999999999999999654

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=96.56  E-value=0.0013  Score=62.18  Aligned_cols=32  Identities=19%  Similarity=0.209  Sum_probs=27.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      +.-++|.||||+|||++++.|++.++.+++.+
T Consensus       238 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~v  269 (489)
T 3hu3_A          238 PRGILLYGPPGTGKTLIARAVANETGAFFFLI  269 (489)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHCSSEEEEE
T ss_pred             CCcEEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence            45688999999999999999999998766543

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.52  E-value=0.0015  Score=53.95  Aligned_cols=33  Identities=21%  Similarity=0.097  Sum_probs=26.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC--CCeech
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLE--VPHISM   94 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g--~~~is~   94 (273)
                      ++..++|.|+|||||||++..|+...+  +.+++.
T Consensus        19 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~   53 (220)
T 2cvh_A           19 PGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDT   53 (220)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEES
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEEC
Confidence            577899999999999999999987433  344544

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.52  E-value=0.0017  Score=52.76  Aligned_cols=26  Identities=15%  Similarity=-0.002  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      +...++|+|++||||||++..|...+
T Consensus         5 ~~~~i~i~G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            5 MIPLLAFAAWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence            35678899999999999999999875

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.51  E-value=0.0014  Score=53.98  Aligned_cols=24  Identities=33%  Similarity=0.470  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .++.|+|++||||||+.+.|+..+
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHhhc
Confidence            468899999999999999999887

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.51  E-value=0.002  Score=51.49  Aligned_cols=26  Identities=19%  Similarity=0.278  Sum_probs=24.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+-.+.|+||.||||||+.+.|+..+
T Consensus        32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           32 KAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            56789999999999999999999987

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.48  E-value=0.0017  Score=57.65  Aligned_cols=27  Identities=22%  Similarity=0.389  Sum_probs=24.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      ++-.+.|+||+||||||+++.|+..+.
T Consensus       125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~~  151 (305)
T 2v9p_A          125 KKNCLAFIGPPNTGKSMLCNSLIHFLG  151 (305)
T ss_dssp             TCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence            577899999999999999999999873

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.48  E-value=0.0018  Score=57.41  Aligned_cols=27  Identities=19%  Similarity=0.310  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .++..|+|+|++||||||++..||..+
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l  128 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAKMF  128 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence            356789999999999999999999877

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.48  E-value=0.0016  Score=58.25  Aligned_cols=26  Identities=15%  Similarity=0.121  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+..++|.|+||+||||+++.+++.+
T Consensus        44 ~~~~vli~G~~G~GKTtl~~~l~~~~   69 (386)
T 2qby_A           44 KPNNIFIYGLTGTGKTAVVKFVLSKL   69 (386)
T ss_dssp             CCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            45678899999999999999999987

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.47  E-value=0.0021  Score=56.93  Aligned_cols=26  Identities=23%  Similarity=0.378  Sum_probs=23.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++..|.|+||.||||||+++.|+..+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll  126 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYY  126 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            57789999999999999999999877

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=96.46  E-value=0.0018  Score=52.13  Aligned_cols=26  Identities=27%  Similarity=0.290  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ....+|+|+|.+|+||||+..+|...
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcC
Confidence            45679999999999999999999753

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.44  E-value=0.0021  Score=57.56  Aligned_cols=27  Identities=19%  Similarity=0.241  Sum_probs=24.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+|..|.|+||+||||||+++.|+..+
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l  153 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWL  153 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            468899999999999999999999876

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=96.43  E-value=0.0018  Score=53.77  Aligned_cols=25  Identities=16%  Similarity=0.197  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+++++++|+||||||++|..+...
T Consensus         4 ~~mi~l~tG~pGsGKT~~a~~~~~~   28 (199)
T 2r2a_A            4 MAEICLITGTPGSGKTLKMVSMMAN   28 (199)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEEEEeCCCCCHHHHHHHHHHH
Confidence            4678999999999999999886443

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.42  E-value=0.0019  Score=57.15  Aligned_cols=38  Identities=21%  Similarity=0.250  Sum_probs=29.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC----C--CeechhHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLE----V--PHISMGSLVRQ  100 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g----~--~~is~~dllr~  100 (273)
                      +..++|.||||+|||+++..|+..+.    .  .++++.+++.+
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~  195 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAID  195 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHH
Confidence            56788999999999999999998653    3  34666666543

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.39  E-value=0.0015  Score=65.11  Aligned_cols=37  Identities=22%  Similarity=0.349  Sum_probs=30.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeech--hHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVR   99 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~--~dllr   99 (273)
                      +.-|+|.||||+|||.+|+.+|.+++.+++++  .+++.
T Consensus       511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s  549 (806)
T 3cf2_A          511 SKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT  549 (806)
T ss_dssp             CSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHT
T ss_pred             CceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhc
Confidence            45588999999999999999999999887754  45554

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=96.39  E-value=0.0017  Score=57.34  Aligned_cols=32  Identities=16%  Similarity=0.106  Sum_probs=26.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      +..+++.||||+||||+++.|++.++..++.+
T Consensus        48 ~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i   79 (324)
T 3u61_B           48 PHIILHSPSPGTGKTTVAKALCHDVNADMMFV   79 (324)
T ss_dssp             CSEEEECSSTTSSHHHHHHHHHHHTTEEEEEE
T ss_pred             CeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEE
Confidence            34567788899999999999999998766644

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.38  E-value=0.0027  Score=49.72  Aligned_cols=25  Identities=20%  Similarity=0.280  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .+..+|+|+|.+|+||||+..+|..
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            4578999999999999999999965

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=96.38  E-value=0.0015  Score=56.07  Aligned_cols=25  Identities=28%  Similarity=0.397  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhC
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      ..|+|.|+||+|||++|+.|++..+
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~~~~   54 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHYLSS   54 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHTST
T ss_pred             CCEEEECCCCCcHHHHHHHHHHhcC
Confidence            4688999999999999999999864

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.37  E-value=0.0025  Score=55.13  Aligned_cols=27  Identities=15%  Similarity=0.198  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .++-.++|+||.||||||+.+.|+..+
T Consensus        23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           23 RKMGLILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence            357789999999999999999999876

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.36  E-value=0.0022  Score=50.04  Aligned_cols=26  Identities=19%  Similarity=0.282  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcC
Confidence            35689999999999999999999863

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=96.34  E-value=0.0022  Score=52.14  Aligned_cols=25  Identities=32%  Similarity=0.380  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ...+|+|+|++||||||+.++|+..
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~   52 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRN   52 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcC
Confidence            4578999999999999999999864

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.32  E-value=0.0021  Score=51.54  Aligned_cols=27  Identities=19%  Similarity=0.210  Sum_probs=22.7

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      +.+..+|+|+|.+|+||||+..+|...
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcC
Confidence            346789999999999999999999864

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.32  E-value=0.0021  Score=53.86  Aligned_cols=25  Identities=16%  Similarity=0.129  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ++..+.|+|+|||||||++..|+..
T Consensus        23 ~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           23 TGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            6778999999999999999999984

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.32  E-value=0.0026  Score=50.24  Aligned_cols=26  Identities=19%  Similarity=0.263  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            45689999999999999999999865

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.32  E-value=0.0024  Score=57.28  Aligned_cols=24  Identities=33%  Similarity=0.444  Sum_probs=22.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ..++|+||||+||||+++.+++.+
T Consensus        45 ~~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           45 PRATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            378999999999999999999988

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.29  E-value=0.0028  Score=56.06  Aligned_cols=27  Identities=22%  Similarity=0.289  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+|..+.|+|+.||||||+++.|+..+
T Consensus        98 ~~g~vi~lvG~nGsGKTTll~~Lag~l  124 (302)
T 3b9q_A           98 RKPAVIMIVGVNGGGKTTSLGKLAHRL  124 (302)
T ss_dssp             SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            357789999999999999999999876

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.29  E-value=0.0023  Score=57.08  Aligned_cols=24  Identities=21%  Similarity=0.331  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhC
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      .++|.||||+||||+++.|++.+.
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~l~   71 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALAREIY   71 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHc
Confidence            388999999999999999999864

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=96.29  E-value=0.0029  Score=53.55  Aligned_cols=27  Identities=15%  Similarity=-0.103  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .++..++++|+||+||||.+..++.++
T Consensus        10 ~~G~i~litG~mGsGKTT~ll~~~~r~   36 (223)
T 2b8t_A           10 KIGWIEFITGPMFAGKTAELIRRLHRL   36 (223)
T ss_dssp             -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence            357899999999999999999998887

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=96.27  E-value=0.0016  Score=57.77  Aligned_cols=24  Identities=29%  Similarity=0.410  Sum_probs=22.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhC
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      .++|.|+||+|||++++.|++.++
T Consensus        47 ~vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           47 GVLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             eEEEECCCCccHHHHHHHHHHhCc
Confidence            488999999999999999999886

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.26  E-value=0.0023  Score=56.80  Aligned_cols=24  Identities=29%  Similarity=0.340  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhC
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      .++|.||||+||||+++.|++.++
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            389999999999999999999864

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.24  E-value=0.003  Score=48.99  Aligned_cols=23  Identities=30%  Similarity=0.407  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ++|+|+|++|+||||+..+|...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            68999999999999999999864

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=96.24  E-value=0.0032  Score=62.46  Aligned_cols=33  Identities=30%  Similarity=0.508  Sum_probs=27.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh----------CCCeechh
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLL----------EVPHISMG   95 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~----------g~~~is~~   95 (273)
                      ...++|+||||+|||++++.|++.+          +..++..+
T Consensus       201 ~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~  243 (758)
T 3pxi_A          201 KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD  243 (758)
T ss_dssp             SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEec
Confidence            4568999999999999999999997          66666553

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.24  E-value=0.0012  Score=53.50  Aligned_cols=25  Identities=12%  Similarity=0.262  Sum_probs=22.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhC
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      ..+.|+|++||||||+++.|+..+.
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~   27 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILR   27 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhh
Confidence            4788999999999999999998873

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.24  E-value=0.0027  Score=53.23  Aligned_cols=33  Identities=15%  Similarity=0.185  Sum_probs=25.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh-----CCCeech
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISM   94 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~   94 (273)
                      ++-.++|.|+|||||||++..++...     ++.+++.
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~   59 (247)
T 2dr3_A           22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL   59 (247)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence            56789999999999999999887653     3445554

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.23  E-value=0.0028  Score=55.28  Aligned_cols=26  Identities=12%  Similarity=0.193  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-.++|+|+|||||||++..|+..+
T Consensus        34 ~G~~~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           34 GGEVIMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            57789999999999999999998765

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.23  E-value=0.0023  Score=56.98  Aligned_cols=23  Identities=22%  Similarity=0.278  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .++|.||+|+||||+++.|++.+
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~~l   60 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            38999999999999999999965

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=96.19  E-value=0.0029  Score=50.99  Aligned_cols=25  Identities=12%  Similarity=0.179  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      +..+|+|+|.+|+||||+..+|...
T Consensus        21 ~~~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           21 EEMELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CccEEEEECCCCCCHHHHHHHHHcC
Confidence            4678999999999999999999753

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.18  E-value=0.0034  Score=58.39  Aligned_cols=36  Identities=11%  Similarity=0.203  Sum_probs=28.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh-----CC--CeechhHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLL-----EV--PHISMGSLV   98 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~-----g~--~~is~~dll   98 (273)
                      +..++|.||||+||||+++.+++.+     +.  .+++..++.
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~  172 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL  172 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH
Confidence            5578899999999999999999977     44  455555543

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=96.18  E-value=0.0032  Score=55.02  Aligned_cols=24  Identities=33%  Similarity=0.415  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhC
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      .++|.||||+||||+++.+++.+.
T Consensus        48 ~~ll~G~~G~GKT~la~~l~~~l~   71 (327)
T 1iqp_A           48 HLLFAGPPGVGKTTAALALARELF   71 (327)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHHhc
Confidence            489999999999999999999864

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.18  E-value=0.0031  Score=55.62  Aligned_cols=26  Identities=23%  Similarity=0.293  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++..|+|+|++||||||++..|+..+
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l  129 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAIS  129 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            56789999999999999999999765

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.17  E-value=0.0031  Score=48.90  Aligned_cols=24  Identities=21%  Similarity=0.246  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ..+|+|+|++|+||||+..+|...
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcC
Confidence            478999999999999999998753

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.16  E-value=0.0038  Score=49.32  Aligned_cols=26  Identities=19%  Similarity=0.285  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhC
Confidence            35689999999999999999999753

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.13  E-value=0.0032  Score=48.71  Aligned_cols=24  Identities=25%  Similarity=0.308  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ..+|+++|.+|+||||+..+|...
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhC
Confidence            468999999999999999999764

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.13  E-value=0.0038  Score=51.57  Aligned_cols=26  Identities=15%  Similarity=0.199  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      +...|+|+|.+||||||+..+|+..+
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            45789999999999999999999875

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=96.13  E-value=0.0032  Score=62.31  Aligned_cols=32  Identities=28%  Similarity=0.418  Sum_probs=26.9

Q ss_pred             CCCe-EEEEEcCCCCChhHHHHHHHHHhCCCee
Q 024067           61 RRGV-QWVLIGDPGVKKHVYADNLSKLLEVPHI   92 (273)
Q Consensus        61 ~~~~-~Ivi~G~pGSGKsT~a~~La~~~g~~~i   92 (273)
                      .++. .++|.||||+|||++|+.|++.++.+++
T Consensus       485 ~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~  517 (758)
T 1r6b_X          485 HKPVGSFLFAGPTGVGKTEVTVQLSKALGIELL  517 (758)
T ss_dssp             TSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEE
T ss_pred             CCCceEEEEECCCCCcHHHHHHHHHHHhcCCEE
Confidence            3443 6889999999999999999999986554

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.11  E-value=0.0036  Score=50.41  Aligned_cols=27  Identities=26%  Similarity=0.288  Sum_probs=23.5

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      +.+..+|+|+|.+|+||||+..+|...
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           22 YNFVFKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcC
Confidence            356789999999999999999999764

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=96.11  E-value=0.0035  Score=51.05  Aligned_cols=25  Identities=32%  Similarity=0.380  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ...+|+|+|++||||||+.++|+..
T Consensus         4 ~~~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            4 YLFKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcC
Confidence            3578999999999999999999864

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=96.10  E-value=0.0028  Score=53.85  Aligned_cols=26  Identities=19%  Similarity=0.212  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+-.+.|+||.||||||+.+.|+..+
T Consensus        30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           30 EGEFVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            57789999999999999999998654

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.10  E-value=0.0038  Score=58.03  Aligned_cols=26  Identities=23%  Similarity=0.240  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++..|+++|++||||||++..|+..+
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l  121 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFY  121 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            57889999999999999999999776

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=96.09  E-value=0.0034  Score=49.51  Aligned_cols=23  Identities=30%  Similarity=0.475  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      ..+|+|+|++|+||||+..+|..
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhC
Confidence            36899999999999999999975

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.08  E-value=0.003  Score=57.11  Aligned_cols=28  Identities=14%  Similarity=0.304  Sum_probs=25.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~   90 (273)
                      +.++.|+|++||||||+++.|+..+...
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~  197 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFNTT  197 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            6789999999999999999999988654

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=96.06  E-value=0.0034  Score=51.12  Aligned_cols=30  Identities=27%  Similarity=0.241  Sum_probs=22.7

Q ss_pred             CCCCCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           57 GSPPRRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        57 ~~~~~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ++...+..+|+|+|.+|+||||+..+|...
T Consensus        18 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           18 GMPLVRYRKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             -----CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CCCCCCcEEEEEECCCCcCHHHHHHHHHhC
Confidence            344456789999999999999999999864

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.06  E-value=0.0038  Score=49.34  Aligned_cols=26  Identities=19%  Similarity=0.337  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+..+|+|+|++|+||||+..+|...
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhC
Confidence            35678999999999999999998753

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.06  E-value=0.0038  Score=50.83  Aligned_cols=33  Identities=9%  Similarity=0.067  Sum_probs=27.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG   95 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~   95 (273)
                      .+.-|+|.|++|+||||+|..|.++ |...++-|
T Consensus        15 ~G~gvli~G~SGaGKStlal~L~~r-G~~lvaDD   47 (181)
T 3tqf_A           15 DKMGVLITGEANIGKSELSLALIDR-GHQLVCDD   47 (181)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHHT-TCEEEESS
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc-CCeEecCC
Confidence            3567899999999999999999985 87777643

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.05  E-value=0.0034  Score=49.52  Aligned_cols=26  Identities=23%  Similarity=0.291  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+..+|+|+|++|+||||+..+|...
T Consensus         5 ~~~~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            5 SSLFKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHcC
Confidence            34678999999999999999999753

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.04  E-value=0.0034  Score=49.56  Aligned_cols=25  Identities=24%  Similarity=0.357  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      ....+|+|+|.+|+||||+..+|..
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhc
Confidence            4568999999999999999998864

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.04  E-value=0.0047  Score=49.81  Aligned_cols=27  Identities=7%  Similarity=0.036  Sum_probs=22.8

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      +.+..+|+|+|.+|+||||+..++...
T Consensus        17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           17 QGPELKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             CCCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhcC
Confidence            345689999999999999999888753

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=96.04  E-value=0.004  Score=55.62  Aligned_cols=27  Identities=30%  Similarity=0.325  Sum_probs=23.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEV   89 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~   89 (273)
                      +..++|.|+||+||||+++.+++.++.
T Consensus        38 ~~~~ll~G~~G~GKT~la~~la~~l~~   64 (373)
T 1jr3_A           38 HHAYLFSGTRGVGKTSIARLLAKGLNC   64 (373)
T ss_dssp             CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            346889999999999999999999865

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=96.03  E-value=0.0037  Score=49.82  Aligned_cols=25  Identities=24%  Similarity=0.413  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+.+|+|+|.||+||||+..+|...
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4678999999999999999999864

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.03  E-value=0.0044  Score=56.18  Aligned_cols=27  Identities=22%  Similarity=0.289  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+|..|.|+|+.||||||+++.|+..+
T Consensus       155 ~~g~vi~lvG~nGsGKTTll~~Lag~l  181 (359)
T 2og2_A          155 RKPAVIMIVGVNGGGKTTSLGKLAHRL  181 (359)
T ss_dssp             SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence            357889999999999999999999876

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.02  E-value=0.0043  Score=49.52  Aligned_cols=25  Identities=20%  Similarity=0.337  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .+..+|+|+|.+|+||||+..+|..
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~   33 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTD   33 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhc
Confidence            4568999999999999999999986

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=96.02  E-value=0.0046  Score=55.47  Aligned_cols=27  Identities=37%  Similarity=0.526  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .++..+.|+|+|||||||+.+.|+..+
T Consensus        53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~   79 (337)
T 2qm8_A           53 GRAIRVGITGVPGVGKSTTIDALGSLL   79 (337)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence            357899999999999999999998764

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=96.02  E-value=0.0036  Score=54.47  Aligned_cols=23  Identities=30%  Similarity=0.417  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .++|.||||+||||+++.+++.+
T Consensus        40 ~~ll~G~~G~GKt~la~~l~~~l   62 (319)
T 2chq_A           40 HLLFSGPPGTGKTATAIALARDL   62 (319)
T ss_dssp             CEEEESSSSSSHHHHHHHHHHHH
T ss_pred             eEEEECcCCcCHHHHHHHHHHHh
Confidence            38999999999999999999986

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.01  E-value=0.0042  Score=48.19  Aligned_cols=24  Identities=17%  Similarity=0.152  Sum_probs=21.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ..+|+|+|.+|+||||+..+|...
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            578999999999999999999854

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.01  E-value=0.0047  Score=51.23  Aligned_cols=26  Identities=23%  Similarity=0.302  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      +..+|+|+|.+|+||||+..+|+...
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999999875

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=96.00  E-value=0.0033  Score=49.97  Aligned_cols=25  Identities=12%  Similarity=0.183  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .+..+|+|+|.+|+||||+..+|..
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHc
Confidence            3567999999999999999999974

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=96.00  E-value=0.0052  Score=50.67  Aligned_cols=27  Identities=15%  Similarity=-0.069  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .++..++++|++||||||.+..++.++
T Consensus         6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~   32 (191)
T 1xx6_A            6 DHGWVEVIVGPMYSGKSEELIRRIRRA   32 (191)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            346789999999999999999999988

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.00  E-value=0.0045  Score=50.95  Aligned_cols=27  Identities=11%  Similarity=0.001  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+..+|+|+|++|+||||+..+|....
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            356799999999999999999998754

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=95.99  E-value=0.0045  Score=48.85  Aligned_cols=25  Identities=16%  Similarity=0.194  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .+..+|+|+|.+|+||||+..+|..
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4678999999999999999999975

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=95.99  E-value=0.0043  Score=49.73  Aligned_cols=27  Identities=22%  Similarity=0.326  Sum_probs=23.5

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      |.+..+|+|+|++|+||||+..+|...
T Consensus        13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           13 PDQEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhcC
Confidence            456789999999999999999998754

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=95.98  E-value=0.0043  Score=48.74  Aligned_cols=24  Identities=38%  Similarity=0.481  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      +..+|+|+|.+|+||||+..+|..
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAG   26 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred             eEEEEEEECCCCccHHHHHHHHhc
Confidence            457899999999999999999874

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=95.98  E-value=0.0045  Score=48.17  Aligned_cols=23  Identities=22%  Similarity=0.368  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      ..+|+|+|.+|+||||+..+|..
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~   25 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Confidence            46899999999999999999975

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=95.98  E-value=0.0047  Score=49.64  Aligned_cols=26  Identities=12%  Similarity=0.028  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+..+|+|+|++|+||||+..+|...
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            35679999999999999999999864

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=95.97  E-value=0.0042  Score=48.57  Aligned_cols=26  Identities=19%  Similarity=0.153  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcC
Confidence            35689999999999999999999754

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=95.97  E-value=0.0032  Score=53.06  Aligned_cols=26  Identities=27%  Similarity=0.229  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+-.+.|+||.||||||+.+.|+..+
T Consensus        29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           29 KGEFVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            56788999999999999999998654

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=95.96  E-value=0.0056  Score=48.96  Aligned_cols=26  Identities=15%  Similarity=0.114  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ...++|+|+|.+|+||||+..+|...
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcC
Confidence            45578999999999999999999765

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.96  E-value=0.004  Score=48.64  Aligned_cols=24  Identities=21%  Similarity=0.242  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      +..+|+|+|.+|+||||+..+|..
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHc
Confidence            357899999999999999999975

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=95.96  E-value=0.0042  Score=48.45  Aligned_cols=24  Identities=29%  Similarity=0.396  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      ...+|+|+|++|+||||+..+|..
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~   25 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVE   25 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CceEEEEECcCCCCHHHHHHHHHh
Confidence            357899999999999999999975

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=95.96  E-value=0.0036  Score=53.27  Aligned_cols=26  Identities=19%  Similarity=0.279  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-.+.|+||.||||||+.+.|+..+
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           30 EGALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            57789999999999999999998654

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.96  E-value=0.0032  Score=50.05  Aligned_cols=24  Identities=17%  Similarity=0.297  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLS   84 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La   84 (273)
                      .+..+|+|+|++|+||||+..+|.
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHh
Confidence            467899999999999999998886

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=95.95  E-value=0.0055  Score=53.22  Aligned_cols=27  Identities=15%  Similarity=0.135  Sum_probs=23.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEV   89 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~   89 (273)
                      ...|+|.||||+|||+++..|+..+++
T Consensus       104 ~n~~~l~GppgtGKt~~a~ala~~~~l  130 (267)
T 1u0j_A          104 RNTIWLFGPATTGKTNIAEAIAHTVPF  130 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence            346999999999999999999997644

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=95.95  E-value=0.0048  Score=48.86  Aligned_cols=26  Identities=23%  Similarity=0.232  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+..+|+|+|.+|+||||+..++...
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcC
Confidence            45689999999999999999998754

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=95.93  E-value=0.0049  Score=50.10  Aligned_cols=27  Identities=30%  Similarity=0.399  Sum_probs=22.0

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ..+..+|+|+|.+|+||||+..+|...
T Consensus        25 ~~~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           25 SQKAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             ---CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             cCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence            346789999999999999999999753

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=95.93  E-value=0.0041  Score=49.00  Aligned_cols=24  Identities=21%  Similarity=0.340  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      +..+|+|+|.+|+||||+..+|..
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~~   36 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFMY   36 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHc
Confidence            457899999999999999999974

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.92  E-value=0.004  Score=53.93  Aligned_cols=26  Identities=23%  Similarity=0.271  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-.++|+|+|||||||++..|+...
T Consensus        29 ~G~i~~i~G~~GsGKTtl~~~l~~~~   54 (279)
T 1nlf_A           29 AGTVGALVSPGGAGKSMLALQLAAQI   54 (279)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            67789999999999999999998643

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=95.92  E-value=0.0043  Score=49.38  Aligned_cols=25  Identities=24%  Similarity=0.306  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      +..+|+|+|.+|+||||+..+|...
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhC
Confidence            4678999999999999999999754

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.92  E-value=0.0053  Score=55.33  Aligned_cols=26  Identities=27%  Similarity=0.313  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      +..+|+|+|+||+||||++..|+..+
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHH
Confidence            56789999999999999999999876

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.91  E-value=0.0043  Score=48.35  Aligned_cols=24  Identities=21%  Similarity=0.317  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ..+|+|+|++|+||||+..+|...
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            468999999999999999998754

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.91  E-value=0.0052  Score=49.71  Aligned_cols=26  Identities=19%  Similarity=0.264  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            45789999999999999999999864

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.91  E-value=0.0045  Score=53.98  Aligned_cols=23  Identities=26%  Similarity=0.446  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .++|.||||+||||+++.+++.+
T Consensus        44 ~~ll~G~~G~GKt~la~~l~~~l   66 (323)
T 1sxj_B           44 HMIISGMPGIGKTTSVHCLAHEL   66 (323)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHHh
Confidence            38999999999999999999986

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=95.89  E-value=0.005  Score=49.52  Aligned_cols=26  Identities=19%  Similarity=0.189  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            45689999999999999999999753

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=95.89  E-value=0.0046  Score=52.72  Aligned_cols=27  Identities=19%  Similarity=0.400  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+..+|+|+|.+|+||||+..+|...-
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~~~   46 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILRKQ   46 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCC
Confidence            356899999999999999999997543

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=95.88  E-value=0.0056  Score=55.14  Aligned_cols=26  Identities=27%  Similarity=0.466  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+..|.|+|+|||||||+...|...+
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999999754

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=95.88  E-value=0.0053  Score=57.92  Aligned_cols=27  Identities=19%  Similarity=0.322  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .++.+|.|+|+.||||||+++.|+..+
T Consensus       291 ~~GeVI~LVGpNGSGKTTLl~~LAgll  317 (503)
T 2yhs_A          291 KAPFVILMVGVNGVGKTTTIGKLARQF  317 (503)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence            467899999999999999999999876

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=95.88  E-value=0.0044  Score=51.75  Aligned_cols=25  Identities=16%  Similarity=0.023  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+-++.|+||.||||||+.+.|+..
T Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           21 TNTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4668889999999999999999864

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=95.87  E-value=0.0047  Score=54.34  Aligned_cols=33  Identities=15%  Similarity=-0.045  Sum_probs=28.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS   96 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~d   96 (273)
                      ..++|.|++|+||||+++.+++..++.+++...
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~   64 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNERPGILIDCRE   64 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHH
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeec
Confidence            578899999999999999999998877776543

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=95.86  E-value=0.0057  Score=49.53  Aligned_cols=26  Identities=15%  Similarity=0.105  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhC
Confidence            35678999999999999999998754

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=95.86  E-value=0.0054  Score=48.28  Aligned_cols=26  Identities=23%  Similarity=0.416  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcC
Confidence            35689999999999999999999864

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=95.86  E-value=0.0045  Score=52.83  Aligned_cols=26  Identities=15%  Similarity=0.143  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+-.+.|+||.||||||+.+.|+..+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           27 PNSIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            57789999999999999999998765

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=95.85  E-value=0.0047  Score=48.21  Aligned_cols=25  Identities=28%  Similarity=0.343  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      +..+|+|+|++|+||||+..+|...
T Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            4578999999999999999999764

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=95.85  E-value=0.0051  Score=48.68  Aligned_cols=25  Identities=12%  Similarity=0.112  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      +..+|+|+|.+|+||||+..+|...
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            4679999999999999999999863

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=95.84  E-value=0.0043  Score=53.66  Aligned_cols=26  Identities=23%  Similarity=0.309  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-.+.|+||.||||||+.+.|+..+
T Consensus        31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           31 AGDVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            57789999999999999999998655

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=95.84  E-value=0.0064  Score=48.31  Aligned_cols=26  Identities=23%  Similarity=0.279  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus        16 ~~~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           16 LPTYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            34678999999999999999999854

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=95.82  E-value=0.006  Score=55.49  Aligned_cols=26  Identities=12%  Similarity=0.146  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+..++|+||+||||||+.+.|+..+
T Consensus       135 ~g~~i~ivG~~GsGKTTll~~l~~~~  160 (372)
T 2ewv_A          135 KMGLILVTGPTGSGKSTTIASMIDYI  160 (372)
T ss_dssp             SSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            46689999999999999999999876

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=95.82  E-value=0.0041  Score=54.28  Aligned_cols=26  Identities=31%  Similarity=0.498  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-.+.|+||.||||||+.+.|+..+
T Consensus        33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           33 RGEVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            57789999999999999999998655

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=95.82  E-value=0.0042  Score=49.61  Aligned_cols=27  Identities=11%  Similarity=0.062  Sum_probs=21.9

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      +.+..+|+|+|.+|+||||+..+|...
T Consensus        18 ~~~~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           18 GSQEHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcC
Confidence            346789999999999999999999753

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=95.82  E-value=0.0068  Score=48.65  Aligned_cols=26  Identities=19%  Similarity=0.209  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ....+|+|+|.+|+||||+..+|...
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcC
Confidence            45689999999999999999998753

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=95.81  E-value=0.0053  Score=48.59  Aligned_cols=26  Identities=27%  Similarity=0.291  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus        10 ~~~~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           10 SINAKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcC
Confidence            35678999999999999999998753

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=95.81  E-value=0.0042  Score=48.37  Aligned_cols=24  Identities=25%  Similarity=0.321  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      +..+|+|+|.+|+||||+..+|..
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            5 CQFKLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHc
Confidence            467899999999999999999975

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=95.81  E-value=0.0043  Score=53.78  Aligned_cols=26  Identities=27%  Similarity=0.326  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+-.+.|+||.||||||+.+.|+..+
T Consensus        36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           36 SGEMVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            57789999999999999999998655

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=95.80  E-value=0.0042  Score=49.91  Aligned_cols=22  Identities=23%  Similarity=0.492  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .+|+|+|++|+||||+..+|+.
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            5799999999999999999975

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=95.80  E-value=0.0056  Score=47.84  Aligned_cols=22  Identities=27%  Similarity=0.510  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .+|+|+|.+|+||||+..+|..
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            5799999999999999999864

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=95.80  E-value=0.009  Score=56.00  Aligned_cols=152  Identities=7%  Similarity=-0.032  Sum_probs=76.6

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcc
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY  139 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~  139 (273)
                      +.++..|||+||+|+|   +.++|.+.+.-.+.+.-  -|  ..++..-|.       ++..    +-...+.+.+.+  
T Consensus       221 ~~~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s~~--TR--pR~gE~dG~-------~Y~F----Ts~~~V~~vl~~--  280 (468)
T 3shw_A          221 AGFLRPVTIFGPIADV---AREKLAREEPDIYQIAK--SE--PRDAGTDQR-------SSGI----IRLHTIKQIIDQ--  280 (468)
T ss_dssp             CSSCCCEEEESTTHHH---HHHHHHHHCTTTEEECC--CB--C-----------------CB----CCHHHHHHHHTT--
T ss_pred             CCCCCEEEEECCCHHH---HHHHHHHhCCCceeeec--CC--CCCcccccc-------cCCc----ccHHHHHHHHHC--
Confidence            4577789999999999   88988888753343321  11  112111111       1111    223444444544  


Q ss_pred             cCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccC-HHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHH
Q 024067          140 YRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSI-EDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFR  218 (273)
Q Consensus       140 ~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~-~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~  218 (273)
                         ++.+|||--|....|...  ....| ++||+..| .++|.+ +..|.. .                ++++.+++++.
T Consensus       281 ---Gk~~iLdId~qg~~~l~~--~~~~p-~~IFI~PPS~e~L~~-~~~rl~-~----------------~see~~~r~~~  336 (468)
T 3shw_A          281 ---DKHALLDVTPNAVDRLNY--AQWYP-IVVFLNPDSKQGVKT-MRMRLC-P----------------ESRKSARKLYE  336 (468)
T ss_dssp             ---TCEEEECCCHHHHHHHHH--TTCCC-EEEEEECSCHHHHHH-HHHHHC-T----------------TCCCCHHHHHH
T ss_pred             ---CCeEEEEeCHHHHHHHHh--cCCCC-EEEEEeCcCHHHHHH-HHhccC-C----------------CCHHHHHHHHH
Confidence               588999976544333321  12344 67777765 455544 333321 1                11224566665


Q ss_pred             HHHHhhHHHHHHHHhcCcEEEEeCCCCh-hHHHHHHHHHHHhcC
Q 024067          219 IYAEQGKSLEDYYSKQRKLLNFQVAAAP-GETWQGLLSALHLQH  261 (273)
Q Consensus       219 ~y~~~~~~l~~~y~~~~~~~~id~~~s~-~ev~~~I~~~l~~~~  261 (273)
                      ...+    ++..|...-..+.+|  .+. ++.+++|.++|....
T Consensus       337 ~a~~----~e~~~~~~fD~vIvN--ddl~d~a~~~L~~ii~~~~  374 (468)
T 3shw_A          337 RSHK----LRKNNHHLFTTTINL--NSMNDGWYGALKEAIQQQQ  374 (468)
T ss_dssp             HHHH----HHHHHGGGCSEEEEC--BTTBCHHHHHHHHHHHHHH
T ss_pred             HHHH----HHHhhhccCCEEEEC--CCcHHHHHHHHHHHHHHhc
Confidence            5432    222333221234444  456 478888888876554

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=95.80  E-value=0.0054  Score=54.81  Aligned_cols=33  Identities=12%  Similarity=0.088  Sum_probs=26.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh--CCCeech
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL--EVPHISM   94 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~--g~~~is~   94 (273)
                      ++..++|.||||+||||+|..++...  .+.++++
T Consensus       122 ~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~  156 (331)
T 2vhj_A          122 ASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV  156 (331)
T ss_dssp             ESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence            34567899999999999999999864  3567776

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=95.80  E-value=0.0062  Score=60.37  Aligned_cols=39  Identities=28%  Similarity=0.574  Sum_probs=29.4

Q ss_pred             CCCCe-EEEEEcCCCCChhHHHHHHHHHh---C--CCeechhHHH
Q 024067           60 PRRGV-QWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGSLV   98 (273)
Q Consensus        60 ~~~~~-~Ivi~G~pGSGKsT~a~~La~~~---g--~~~is~~dll   98 (273)
                      |.+|. .++|.||||+|||++|+.|++.+   +  +..+++.++.
T Consensus       517 ~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~  561 (758)
T 3pxi_A          517 PKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYM  561 (758)
T ss_dssp             TTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGC
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcc
Confidence            44554 68999999999999999999987   3  3455554443

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=95.79  E-value=0.0067  Score=50.57  Aligned_cols=25  Identities=24%  Similarity=0.395  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .+..+|+|+|.+|+||||+..+|..
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~   51 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSR   51 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3678999999999999999999865

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=95.78  E-value=0.0052  Score=47.88  Aligned_cols=22  Identities=32%  Similarity=0.466  Sum_probs=19.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLS   84 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La   84 (273)
                      ..+|+|+|.+|+||||+..+|.
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~   23 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFG   23 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHC
T ss_pred             eEEEEEECCCCCCHHHHHHHHc
Confidence            4689999999999999999885

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=95.78  E-value=0.0047  Score=53.51  Aligned_cols=26  Identities=31%  Similarity=0.383  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-++.|+||.||||||+.+.|+..+
T Consensus        49 ~Gei~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           49 EGEVVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence            57789999999999999999998655

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=95.78  E-value=0.0031  Score=51.57  Aligned_cols=25  Identities=16%  Similarity=0.312  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .++.+|+|+|++||||||+.+.|+.
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g   48 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTN   48 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhC
Confidence            4678999999999999999998864

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=95.78  E-value=0.0045  Score=53.01  Aligned_cols=26  Identities=15%  Similarity=0.328  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-++.|+|+.||||||+.+.|+..+
T Consensus        34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           34 QGEVIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            57789999999999999999998765

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=95.77  E-value=0.0055  Score=52.53  Aligned_cols=25  Identities=24%  Similarity=0.315  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ++-.+.|+|+.||||||+.+.|+..
T Consensus        28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           28 KGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5778999999999999999999874

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=95.77  E-value=0.0048  Score=53.63  Aligned_cols=26  Identities=31%  Similarity=0.331  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-++.|+||.||||||+.+.|+..+
T Consensus        44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           44 PGKVTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            57789999999999999999998765

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=95.76  E-value=0.0049  Score=49.40  Aligned_cols=28  Identities=11%  Similarity=-0.044  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      .+..+|+|+|.+|+||||+.+.|...+.
T Consensus        12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           12 EINFKIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHhhcc
Confidence            3567999999999999999988876553

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=95.76  E-value=0.006  Score=49.00  Aligned_cols=25  Identities=24%  Similarity=0.345  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .+..+|+|+|.+|+||||+..+|..
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~   42 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCA   42 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHc
Confidence            3567999999999999999999875

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.76  E-value=0.0066  Score=47.97  Aligned_cols=26  Identities=23%  Similarity=0.307  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhC
Confidence            45689999999999999999998754

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=95.76  E-value=0.0069  Score=53.98  Aligned_cols=27  Identities=19%  Similarity=0.274  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .++..|.|+|++|+||||++..||..+
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l  129 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMANYY  129 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            357789999999999999999999876

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=95.76  E-value=0.0037  Score=59.16  Aligned_cols=25  Identities=28%  Similarity=0.470  Sum_probs=22.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhC
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      ..++|.||||+|||++|+.|++.++
T Consensus        42 ~~VLL~GpPGtGKT~LAraLa~~l~   66 (500)
T 3nbx_X           42 ESVFLLGPPGIAKSLIARRLKFAFQ   66 (500)
T ss_dssp             CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred             CeeEeecCchHHHHHHHHHHHHHHh
Confidence            4789999999999999999999874

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=95.75  E-value=0.0049  Score=53.21  Aligned_cols=26  Identities=27%  Similarity=0.427  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-.+.|+||.||||||+.+.|+..+
T Consensus        45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           45 SGTTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccC
Confidence            57789999999999999999998765

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=95.75  E-value=0.0054  Score=49.40  Aligned_cols=26  Identities=15%  Similarity=0.189  Sum_probs=21.7

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHH
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      +....+|+|+|.+|+||||+..+|..
T Consensus        14 ~~~~~ki~v~G~~~~GKSsl~~~l~~   39 (199)
T 4bas_A           14 SKTKLQVVMCGLDNSGKTTIINQVKP   39 (199)
T ss_dssp             --CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhc
Confidence            45678999999999999999998864

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=95.75  E-value=0.0079  Score=48.41  Aligned_cols=26  Identities=23%  Similarity=0.385  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ....+|+|+|.+|+||||+..+|...
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           19 SYLFKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcC
Confidence            45689999999999999999999753

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=95.74  E-value=0.0059  Score=52.89  Aligned_cols=25  Identities=20%  Similarity=0.302  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ++-++.|+||.||||||+.+.|+..
T Consensus        45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           45 PGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5778999999999999999999875

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=95.73  E-value=0.0062  Score=49.07  Aligned_cols=26  Identities=15%  Similarity=0.203  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus        19 ~~~~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           19 PLEVNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHhC
Confidence            35689999999999999999998764

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=95.73  E-value=0.0049  Score=53.09  Aligned_cols=26  Identities=23%  Similarity=0.397  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+-.+.|+||.||||||+.+.|+..+
T Consensus        32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           32 KGDVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57789999999999999999998655

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=95.73  E-value=0.0064  Score=48.19  Aligned_cols=25  Identities=16%  Similarity=0.138  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      +..+|+|+|.+|+||||+..+|...
T Consensus        17 ~~~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           17 ALHKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhC
Confidence            4578999999999999999999854

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.72  E-value=0.0049  Score=52.49  Aligned_cols=26  Identities=31%  Similarity=0.423  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-.+.|+||.||||||+.+.|+..+
T Consensus        31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           31 RGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            56789999999999999999998655

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=95.72  E-value=0.0055  Score=52.31  Aligned_cols=24  Identities=25%  Similarity=0.468  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      -.+.|+||.||||||+.+.|+..+
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCC
Confidence            578899999999999999998655

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=95.72  E-value=0.0049  Score=52.10  Aligned_cols=26  Identities=23%  Similarity=0.238  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-.+.|+||.||||||+.+.|+..+
T Consensus        33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           33 RGQLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57789999999999999999998765

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=95.72  E-value=0.0059  Score=48.93  Aligned_cols=25  Identities=24%  Similarity=0.294  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      +..+|+|+|.+|+||||+..+|...
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcC
Confidence            3578999999999999999999864

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=95.71  E-value=0.0064  Score=49.36  Aligned_cols=26  Identities=19%  Similarity=0.362  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcC
Confidence            45689999999999999999999764

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=95.69  E-value=0.0083  Score=50.93  Aligned_cols=27  Identities=19%  Similarity=0.356  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+...+++.|.+|+||||++..|+..+
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La~~l   38 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFGRYL   38 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            456788999999999999999999765

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.69  E-value=0.0068  Score=54.62  Aligned_cols=26  Identities=19%  Similarity=0.221  Sum_probs=24.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++..+.|+|+|||||||++..|+...
T Consensus       130 ~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          130 TQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            67889999999999999999999876

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.69  E-value=0.0054  Score=52.90  Aligned_cols=26  Identities=31%  Similarity=0.395  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-.+.|+||.||||||+.+.|+..+
T Consensus        40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           40 EGEIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            57789999999999999999998654

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=95.68  E-value=0.0067  Score=54.91  Aligned_cols=34  Identities=18%  Similarity=0.096  Sum_probs=27.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh---C--CCeechh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMG   95 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~---g--~~~is~~   95 (273)
                      ++..+.|.|||||||||++..++..+   +  +.+|+..
T Consensus        60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E   98 (356)
T 3hr8_A           60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE   98 (356)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence            67789999999999999999999875   2  3466653

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=95.68  E-value=0.0045  Score=51.96  Aligned_cols=26  Identities=23%  Similarity=0.335  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-++.|+||.||||||+.+.|+..+
T Consensus        34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           34 KGNVVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            56688999999999999999998654

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.68  E-value=0.0078  Score=48.44  Aligned_cols=24  Identities=25%  Similarity=0.288  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      ...+|+|+|.+|+||||+..+|..
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHc
Confidence            468999999999999999999976

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=95.68  E-value=0.0057  Score=49.37  Aligned_cols=26  Identities=27%  Similarity=0.339  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcC
Confidence            45689999999999999999999754

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=95.68  E-value=0.0061  Score=51.34  Aligned_cols=26  Identities=19%  Similarity=0.336  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ....+|+|+|.+|+||||+...|...
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~   52 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGR   52 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCC
Confidence            35689999999999999999999753

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=95.67  E-value=0.0058  Score=48.62  Aligned_cols=26  Identities=15%  Similarity=0.280  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+..+|+|+|++|+||||+..+|...
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcC
Confidence            35689999999999999999999754

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=95.65  E-value=0.006  Score=56.65  Aligned_cols=26  Identities=23%  Similarity=0.344  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+..|+|+|+||+||||++..|+..+
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l  123 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYI  123 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999999876

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=95.63  E-value=0.0065  Score=49.14  Aligned_cols=25  Identities=12%  Similarity=0.102  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      +..+|+|+|++|+||||+..+|...
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999863

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=95.60  E-value=0.0057  Score=52.49  Aligned_cols=26  Identities=19%  Similarity=0.300  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-.+.|+||.||||||+.+.|+..+
T Consensus        25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           25 AGEILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            56789999999999999999998654

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=95.59  E-value=0.005  Score=55.72  Aligned_cols=27  Identities=19%  Similarity=0.199  Sum_probs=24.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      .+..++|+|+.||||||+.+.|+..+.
T Consensus       174 ~G~~i~ivG~sGsGKSTll~~l~~~~~  200 (361)
T 2gza_A          174 LERVIVVAGETGSGKTTLMKALMQEIP  200 (361)
T ss_dssp             TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            466899999999999999999998774

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=95.59  E-value=0.0057  Score=53.41  Aligned_cols=26  Identities=27%  Similarity=0.496  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-++.|+||.||||||+.+.|+..+
T Consensus        46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           46 KGDKWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            57789999999999999999998655

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=95.58  E-value=0.0062  Score=52.71  Aligned_cols=26  Identities=19%  Similarity=0.344  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+-.+.|+|+.||||||+.+.|+..+
T Consensus        32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           32 EGECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            57789999999999999999998655

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=95.58  E-value=0.0083  Score=46.60  Aligned_cols=23  Identities=13%  Similarity=0.104  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+|+|+|.+|+||||+..+|...
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            37899999999999999999754

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.57  E-value=0.0082  Score=48.93  Aligned_cols=25  Identities=28%  Similarity=0.376  Sum_probs=21.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      ....+|+|+|.+|+||||+..+|..
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~   42 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVE   42 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHh
Confidence            4568999999999999999999975

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=95.55  E-value=0.0093  Score=53.94  Aligned_cols=25  Identities=16%  Similarity=0.129  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      +-.|+|+||+||||||+.+.|+..+
T Consensus       123 ~g~i~I~GptGSGKTTlL~~l~g~~  147 (356)
T 3jvv_A          123 RGLVLVTGPTGSGKSTTLAAMLDYL  147 (356)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcc
Confidence            4489999999999999999998766

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=95.55  E-value=0.0085  Score=53.67  Aligned_cols=27  Identities=22%  Similarity=0.455  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .++..|+|+|+||+||||+...|+..+
T Consensus        54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~   80 (341)
T 2p67_A           54 GNTLRLGVTGTPGAGKSTFLEAFGMLL   80 (341)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            357889999999999999999998765

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=95.54  E-value=0.0085  Score=50.17  Aligned_cols=24  Identities=25%  Similarity=0.429  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      ++..++|.|+||+|||++|..++.
T Consensus        29 ~G~l~~i~G~pG~GKT~l~l~~~~   52 (251)
T 2zts_A           29 EGTTVLLTGGTGTGKTTFAAQFIY   52 (251)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHH
Confidence            577899999999999999998764

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=95.54  E-value=0.0081  Score=47.93  Aligned_cols=26  Identities=12%  Similarity=0.219  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence            35789999999999999999998753

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=95.54  E-value=0.0086  Score=47.47  Aligned_cols=24  Identities=21%  Similarity=0.373  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      +..+|+|+|.+|+||||+..+|..
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~   27 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTT   27 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHc
Confidence            457899999999999999999875

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=95.53  E-value=0.0082  Score=48.60  Aligned_cols=26  Identities=35%  Similarity=0.492  Sum_probs=21.3

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHH
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      +.+..+|+|+|.+|+||||+..+|..
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~   42 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTT   42 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHh
Confidence            34678999999999999999999874

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=95.53  E-value=0.0086  Score=48.56  Aligned_cols=26  Identities=15%  Similarity=0.180  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ....+|+|+|.+|+||||+..+|...
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A            6 DYMFKILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTC
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcC
Confidence            35679999999999999999998753

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=95.52  E-value=0.0079  Score=52.21  Aligned_cols=24  Identities=21%  Similarity=0.379  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ..+.|+|++||||||+.+.|+...
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            468899999999999999999876

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=95.52  E-value=0.0094  Score=53.10  Aligned_cols=29  Identities=17%  Similarity=0.206  Sum_probs=25.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCe
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPH   91 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~   91 (273)
                      +..++|.||||+||||+++.+++.+....
T Consensus        24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~~   52 (334)
T 1a5t_A           24 HHALLIQALPGMGDDALIYALSRYLLCQQ   52 (334)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHTCSS
T ss_pred             ceeEEEECCCCchHHHHHHHHHHHHhCCC
Confidence            45688999999999999999999987643

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=95.49  E-value=0.0088  Score=48.41  Aligned_cols=25  Identities=12%  Similarity=0.213  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .+..+|+|+|.+|+||||+..+|..
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHh
Confidence            4578999999999999999999853

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=95.48  E-value=0.0066  Score=52.21  Aligned_cols=26  Identities=23%  Similarity=0.332  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-.+.|+||.||||||+.+.|+..+
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           30 KGDILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            56789999999999999999998654

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.48  E-value=0.0082  Score=49.26  Aligned_cols=26  Identities=27%  Similarity=0.321  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHhC
Confidence            45689999999999999999998763

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=95.47  E-value=0.0082  Score=48.39  Aligned_cols=26  Identities=27%  Similarity=0.368  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus        21 ~~~~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           21 KKALKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeeEEEEECcCCCCHHHHHHHHhcC
Confidence            35689999999999999999998764

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.46  E-value=0.0094  Score=47.71  Aligned_cols=25  Identities=12%  Similarity=0.138  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .+..+|+|+|.+|+||||+..+|..
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            3568999999999999999999984

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=95.46  E-value=0.0074  Score=48.11  Aligned_cols=23  Identities=17%  Similarity=0.205  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+|+|+|.+|+||||+..+|...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCc
Confidence            57999999999999999999753

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=95.46  E-value=0.0066  Score=49.45  Aligned_cols=25  Identities=24%  Similarity=0.372  Sum_probs=21.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      ....+|+|+|.+|+||||+..+|..
T Consensus        21 ~~~~ki~vvG~~~vGKSsLi~~l~~   45 (195)
T 3cbq_A           21 DGIFKVMLVGESGVGKSTLAGTFGG   45 (195)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHh
Confidence            3567999999999999999998853

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=95.45  E-value=0.0066  Score=53.49  Aligned_cols=25  Identities=24%  Similarity=0.310  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      +..|+|.|+||+|||++|+.|++..
T Consensus        25 ~~~vLi~Ge~GtGKt~lAr~i~~~~   49 (304)
T 1ojl_A           25 DATVLIHGDSGTGKELVARALHACS   49 (304)
T ss_dssp             TSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred             CCcEEEECCCCchHHHHHHHHHHhC
Confidence            4468899999999999999999864

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=95.45  E-value=0.0061  Score=61.32  Aligned_cols=25  Identities=36%  Similarity=0.565  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      +..++|+|+||+||||+++.|++.+
T Consensus       191 ~~~vlL~G~pG~GKT~la~~la~~l  215 (854)
T 1qvr_A          191 KNNPVLIGEPGVGKTAIVEGLAQRI  215 (854)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCceEEEcCCCCCHHHHHHHHHHHH
Confidence            3457899999999999999999987

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=95.45  E-value=0.0071  Score=48.44  Aligned_cols=25  Identities=20%  Similarity=0.328  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      +..+|+|+|.+|+||||+..+|...
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcC
Confidence            4578999999999999999999754

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=95.43  E-value=0.0089  Score=48.98  Aligned_cols=26  Identities=12%  Similarity=-0.054  Sum_probs=21.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            35678999999999999999999864

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=95.43  E-value=0.0062  Score=49.39  Aligned_cols=27  Identities=11%  Similarity=-0.007  Sum_probs=21.4

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      +.+..+|+|+|.+|+||||+.+.|...
T Consensus        17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~   43 (196)
T 3llu_A           17 QGSKPRILLMGLRRSGKSSIQKVVFHK   43 (196)
T ss_dssp             ---CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHHhc
Confidence            345689999999999999999887654

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=95.42  E-value=0.0083  Score=54.36  Aligned_cols=26  Identities=23%  Similarity=0.298  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+-.+.|+||.||||||+.+.|+...
T Consensus        29 ~Ge~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           29 PGEILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcCC
Confidence            57789999999999999999998754

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=95.42  E-value=0.011  Score=48.38  Aligned_cols=26  Identities=19%  Similarity=0.170  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcC
Confidence            35689999999999999999998753

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=95.42  E-value=0.0088  Score=49.19  Aligned_cols=26  Identities=19%  Similarity=0.221  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcC
Confidence            35689999999999999999999864

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=95.41  E-value=0.0096  Score=56.37  Aligned_cols=27  Identities=15%  Similarity=0.182  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .++..|+|+|+|||||||++..|+..+
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l  125 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYY  125 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            356789999999999999999999766

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.38  E-value=0.01  Score=47.75  Aligned_cols=27  Identities=15%  Similarity=0.171  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ....+|+|+|.+|+||||+..+|...-
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhcCC
Confidence            356899999999999999999998753

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=95.37  E-value=0.0094  Score=53.73  Aligned_cols=34  Identities=18%  Similarity=0.052  Sum_probs=27.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh-----CCCeechh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG   95 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~~   95 (273)
                      ++..+.|.|+|||||||++..++...     .+.++++.
T Consensus        60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E   98 (349)
T 2zr9_A           60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE   98 (349)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence            67789999999999999999998654     35566653

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=95.37  E-value=0.0075  Score=60.66  Aligned_cols=27  Identities=30%  Similarity=0.539  Sum_probs=23.6

Q ss_pred             CCCe-EEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGV-QWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~-~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+|. .++|.||||+|||++|+.|++.+
T Consensus       585 ~~p~~~vLl~Gp~GtGKT~lA~~la~~~  612 (854)
T 1qvr_A          585 NRPIGSFLFLGPTGVGKTELAKTLAATL  612 (854)
T ss_dssp             SSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            3443 78899999999999999999988

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=95.35  E-value=0.0096  Score=53.93  Aligned_cols=26  Identities=23%  Similarity=0.236  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+-.+.|+||.||||||+.+.|+..+
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           28 DGEFVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence            57789999999999999999998654

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=95.35  E-value=0.0093  Score=49.15  Aligned_cols=25  Identities=32%  Similarity=0.404  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .+..+|+|+|.+|+||||+..+|..
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~   56 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFAD   56 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHc
Confidence            3568999999999999999999974

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=95.34  E-value=0.025  Score=51.78  Aligned_cols=151  Identities=8%  Similarity=-0.014  Sum_probs=77.3

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcc
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY  139 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~  139 (273)
                      +.++..|||+||+|   +|+.++|.+.+.-.+.++   .+ ...++..-|.       +...++.    ..+.+.+.+  
T Consensus       229 ~~~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~~---tr-~pR~gE~dG~-------~Y~Fv~~----~~V~~~~~~--  288 (391)
T 3tsz_A          229 AGFLRPVTIFGPIA---DVAREKLAREEPDIYQIA---KS-EPRDAGTDQR-------SSGIIRL----HTIKQIIDQ--  288 (391)
T ss_dssp             CSSCCCEEEESTTH---HHHHHHHHHHCTTTEEEC---CC-CCCCSSSCCC---------CCCCH----HHHHHHHTT--
T ss_pred             CCCCCEEEEECCCH---HHHHHHHHhhCccccccc---cC-CCCCcccCCc-------cCCcCcH----HHHHHHHHc--
Confidence            45677899999998   899999998875444442   12 1111111000       0112232    334444443  


Q ss_pred             cCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccC-HHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHH
Q 024067          140 YRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSI-EDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFR  218 (273)
Q Consensus       140 ~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~-~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~  218 (273)
                         ++.+|||--|....|...  ....| ++||+..| .++|.+| ..|..                 .++++.++++++
T Consensus       289 ---Gk~~iLdId~qg~~~l~~--~~~~p-~~IFI~PPS~~~L~~~-~~r~~-----------------~~s~e~~~~~~~  344 (391)
T 3tsz_A          289 ---DKHALLDVTPNAVDRLNY--AQWYP-IVVFLNPDSKQGVKTM-RMRLC-----------------PESRKSARKLYE  344 (391)
T ss_dssp             ---TCEEEECCCHHHHHHHHH--TTCCC-EEEEEECCCHHHHHHH-HHHHC-----------------SSCCCCHHHHHH
T ss_pred             ---CCEEEEEeCHHHHHHHHh--CCCCC-EEEEEeCcCHHHHHHH-HhcCC-----------------CCCHHHHHHHHH
Confidence               588999976544333321  12344 56777765 5666554 44431                 112224566655


Q ss_pred             HHHHhhHHHHHHHHhcCcEEEEeCCCChh-HHHHHHHHHHHhc
Q 024067          219 IYAEQGKSLEDYYSKQRKLLNFQVAAAPG-ETWQGLLSALHLQ  260 (273)
Q Consensus       219 ~y~~~~~~l~~~y~~~~~~~~id~~~s~~-ev~~~I~~~l~~~  260 (273)
                      ...+    ++..|...-..+.+|  .+.+ +.+++|.++|...
T Consensus       345 ~a~~----~e~~~~~~fd~vivN--d~l~~~a~~~l~~ii~~~  381 (391)
T 3tsz_A          345 RSHK----LRKNNHHLFTTTINL--NSMNDGWYGALKEAIQQQ  381 (391)
T ss_dssp             HHHH----HHHHHGGGCSEEEEC--CTTCCHHHHHHHHHHHHH
T ss_pred             HHHH----HHHhccccCcEEEEC--CCcHHHHHHHHHHHHHHh
Confidence            4422    222343221234444  4555 5778888777654

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=95.33  E-value=0.0098  Score=54.32  Aligned_cols=26  Identities=23%  Similarity=0.303  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+-.+.|+||.||||||+.+.|+..+
T Consensus        28 ~Ge~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           28 EGEFVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence            57789999999999999999998755

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=95.32  E-value=0.0084  Score=48.86  Aligned_cols=24  Identities=17%  Similarity=0.184  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      +..+|+|+|++|+||||+..+|..
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhc
Confidence            457899999999999999999864

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=95.32  E-value=0.011  Score=48.20  Aligned_cols=26  Identities=27%  Similarity=0.272  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            6 DYLFKLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcC
Confidence            35679999999999999999998753

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=95.31  E-value=0.01  Score=53.84  Aligned_cols=28  Identities=18%  Similarity=0.262  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      .+..+|+|+|.+||||||+++++.-.++
T Consensus        31 ~~~~killlG~~~SGKST~~kq~~i~~~   58 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQMRIIHG   58 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHS
T ss_pred             cCccEEEEECCCCCcHHHHHHHHHHHhC
Confidence            4688999999999999999999965443

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=95.30  E-value=0.013  Score=54.20  Aligned_cols=27  Identities=15%  Similarity=-0.021  Sum_probs=24.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      ++-.|+|+||.||||||+.+.|+..+.
T Consensus       166 ~ggii~I~GpnGSGKTTlL~allg~l~  192 (418)
T 1p9r_A          166 PHGIILVTGPTGSGKSTTLYAGLQELN  192 (418)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence            456889999999999999999998874

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=95.28  E-value=0.01  Score=53.80  Aligned_cols=26  Identities=19%  Similarity=0.304  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+-.+.|+||.||||||+.+.|+..+
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           28 DGEFMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcCC
Confidence            57789999999999999999998755

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=95.28  E-value=0.012  Score=51.90  Aligned_cols=25  Identities=24%  Similarity=0.282  Sum_probs=23.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      +..|+++|++|+||||++..|+..+
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~  122 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFY  122 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            7788899999999999999999877

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=95.27  E-value=0.012  Score=52.84  Aligned_cols=26  Identities=12%  Similarity=-0.033  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .++..+.|.|+|||||||++..++..
T Consensus       120 ~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          120 ESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            36778999999999999999999986

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=95.27  E-value=0.01  Score=47.93  Aligned_cols=24  Identities=25%  Similarity=0.429  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      ...+|+|+|.+|+||||+..+|..
T Consensus        25 ~~~ki~vvG~~~~GKSsLi~~l~~   48 (192)
T 2il1_A           25 FKLQVIIIGSRGVGKTSLMERFTD   48 (192)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHhc
Confidence            457899999999999999999864

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=95.26  E-value=0.011  Score=48.59  Aligned_cols=25  Identities=20%  Similarity=0.371  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .+..+|+|+|.+|+||||+..+|..
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~   47 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTD   47 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHC
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhc
Confidence            4568999999999999999999975

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=95.24  E-value=0.01  Score=53.62  Aligned_cols=26  Identities=23%  Similarity=0.226  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+-.+.|+||.||||||+.+.|+..+
T Consensus        40 ~Ge~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           40 EGEMVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            56788999999999999999998654

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=95.23  E-value=0.0096  Score=54.74  Aligned_cols=24  Identities=21%  Similarity=0.180  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      ++-.+.|+|+|||||||++..|+-
T Consensus       177 ~Gei~~I~G~sGsGKTTLl~~la~  200 (400)
T 3lda_A          177 TGSITELFGEFRTGKSQLCHTLAV  200 (400)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCChHHHHHHHHH
Confidence            577899999999999999998873

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=95.23  E-value=0.011  Score=53.82  Aligned_cols=26  Identities=27%  Similarity=0.314  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+-.+.|+||.||||||+.+.|+..+
T Consensus        36 ~Ge~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           36 DGEFLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCC
Confidence            57789999999999999999998654

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=95.22  E-value=0.0088  Score=57.77  Aligned_cols=27  Identities=30%  Similarity=0.569  Sum_probs=23.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEV   89 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~   89 (273)
                      +..++|+||||+||||+++.|+..++.
T Consensus        60 g~~vll~Gp~GtGKTtlar~ia~~l~~   86 (604)
T 3k1j_A           60 KRHVLLIGEPGTGKSMLGQAMAELLPT   86 (604)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred             CCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence            457899999999999999999998753

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=95.22  E-value=0.011  Score=50.97  Aligned_cols=24  Identities=29%  Similarity=0.387  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .++|+|+|+||+||||+..+|...
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999999754

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=95.21  E-value=0.014  Score=51.34  Aligned_cols=26  Identities=27%  Similarity=0.387  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++..|.|+|++|+||||++..||..+
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~  122 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYY  122 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            56788889999999999999999876

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=95.21  E-value=0.016  Score=48.70  Aligned_cols=27  Identities=15%  Similarity=-0.098  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .++.+.+++|++||||||.+-.++.++
T Consensus        26 ~~G~l~vitG~MgsGKTT~lL~~a~r~   52 (214)
T 2j9r_A           26 QNGWIEVICGSMFSGKSEELIRRVRRT   52 (214)
T ss_dssp             CSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            457888999999999999999999887

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=95.21  E-value=0.0087  Score=48.04  Aligned_cols=26  Identities=15%  Similarity=0.166  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~   44 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPS   44 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcC
Confidence            45689999999999999999988754

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=95.21  E-value=0.012  Score=47.92  Aligned_cols=26  Identities=23%  Similarity=0.164  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ....+|+|+|.+|+||||+..+|...
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhC
Confidence            35678999999999999999999863

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=95.20  E-value=0.0098  Score=48.41  Aligned_cols=25  Identities=16%  Similarity=0.296  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .+..+|+|+|.+|+||||+..+|..
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~   47 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIE   47 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHh
Confidence            4568999999999999999999864

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=95.20  E-value=0.0088  Score=56.00  Aligned_cols=26  Identities=19%  Similarity=0.317  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+.++.|+||.||||||+++.|+..+
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence            57789999999999999999999865

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=95.20  E-value=0.0093  Score=52.40  Aligned_cols=26  Identities=23%  Similarity=0.238  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-++.|+|+.||||||+.+.|+..+
T Consensus        63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           63 RGQLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            56789999999999999999998654

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=95.20  E-value=0.0051  Score=54.54  Aligned_cols=26  Identities=23%  Similarity=0.339  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+-.+.|+||.||||||+.+.|+..+
T Consensus        79 ~Ge~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           79 PGQTLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCchHHHHHHHHHcCC
Confidence            57789999999999999999998766

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=95.18  E-value=0.012  Score=53.53  Aligned_cols=26  Identities=23%  Similarity=0.302  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-.+.|+||.||||||+.+.|+..+
T Consensus        53 ~Gei~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           53 AGQIYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence            57789999999999999999998655

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=95.18  E-value=0.012  Score=48.02  Aligned_cols=25  Identities=20%  Similarity=0.345  Sum_probs=21.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .+..+|+|+|.+|+||||+..++..
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~   52 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTT   52 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHh
Confidence            3568999999999999999999875

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=95.17  E-value=0.0092  Score=51.65  Aligned_cols=25  Identities=28%  Similarity=0.465  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      +-++.|+||.||||||+.+.|+..+
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCC
Confidence            6789999999999999999998654

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.14  E-value=0.009  Score=48.07  Aligned_cols=25  Identities=20%  Similarity=0.200  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      +..+|+|+|.+|+||||+..+|...
T Consensus        17 ~~~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           17 LMLKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            5578999999999999999999864

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=95.14  E-value=0.012  Score=48.04  Aligned_cols=25  Identities=24%  Similarity=0.310  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .+..+|+|+|.+|+||||+..+|..
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~   51 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKT   51 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhh
Confidence            3567899999999999999999865

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=95.12  E-value=0.013  Score=58.01  Aligned_cols=26  Identities=31%  Similarity=0.445  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++..++|+|+||+||||+++.|++.+
T Consensus       206 ~~~~vlL~G~~GtGKT~la~~la~~l  231 (758)
T 1r6b_X          206 RKNNPLLVGESGVGKTAIAEGLAWRI  231 (758)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence            35678999999999999999999987

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=95.10  E-value=0.012  Score=53.53  Aligned_cols=26  Identities=23%  Similarity=0.307  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+-.+.|+||.||||||+.+.|+..+
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           28 DGEFMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence            56788999999999999999998654

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=95.10  E-value=0.018  Score=48.77  Aligned_cols=25  Identities=20%  Similarity=0.126  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ..+|++.|+||+||||++-.++..+
T Consensus         6 ~l~I~~~~kgGvGKTt~a~~la~~l   30 (228)
T 2r8r_A            6 RLKVFLGAAPGVGKTYAMLQAAHAQ   30 (228)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHH
Confidence            3679999999999999998888775

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=95.09  E-value=0.013  Score=48.68  Aligned_cols=25  Identities=32%  Similarity=0.403  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      ....+|+|+|.||+||||+..++..
T Consensus        35 ~~~~kVvlvG~~~vGKSSLl~r~~~   59 (211)
T 2g3y_A           35 NTYYRVVLIGEQGVGKSTLANIFAG   59 (211)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHh
Confidence            3457899999999999999999874

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=95.07  E-value=0.015  Score=48.05  Aligned_cols=26  Identities=27%  Similarity=0.254  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcC
Confidence            35689999999999999999999764

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=95.07  E-value=0.016  Score=50.91  Aligned_cols=31  Identities=10%  Similarity=-0.032  Sum_probs=25.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCC--Ceech
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEV--PHISM   94 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~--~~is~   94 (273)
                      ..++|.|++|+||||+++.+++..+.  .+++.
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~   63 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDL   63 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEc
Confidence            38889999999999999999998753  34554

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=95.05  E-value=0.016  Score=46.94  Aligned_cols=25  Identities=32%  Similarity=0.422  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ...+|+|+|.||+||||+..++...
T Consensus         5 ~~~kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            5 TYYRVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            3578999999999999999999864

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=95.05  E-value=0.0079  Score=53.75  Aligned_cols=26  Identities=19%  Similarity=0.466  Sum_probs=23.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      +..++|+|++||||||+.+.|+..+.
T Consensus       171 g~~v~i~G~~GsGKTTll~~l~g~~~  196 (330)
T 2pt7_A          171 GKNVIVCGGTGSGKTTYIKSIMEFIP  196 (330)
T ss_dssp             TCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            55789999999999999999998764

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=95.04  E-value=0.013  Score=51.93  Aligned_cols=26  Identities=19%  Similarity=0.152  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++..++|.|+|||||||++..++...
T Consensus       106 ~G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          106 TRTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHhHHHHHHHHHH
Confidence            56789999999999999999999764

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=95.04  E-value=0.014  Score=52.70  Aligned_cols=33  Identities=12%  Similarity=0.039  Sum_probs=27.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh-----CCCeech
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISM   94 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~   94 (273)
                      ++..++|.|+||+||||+|..|+...     .+.+|++
T Consensus        62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~   99 (356)
T 1u94_A           62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA   99 (356)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            67789999999999999999998764     3567776

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=95.03  E-value=0.009  Score=47.45  Aligned_cols=24  Identities=33%  Similarity=0.375  Sum_probs=11.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      ...+|+|+|.+|+||||+..+|..
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~l~~   30 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLFRFSE   30 (183)
T ss_dssp             EEEEEEEECCCCC-----------
T ss_pred             CceEEEEECCCCCCHHHHHHHHHh
Confidence            467899999999999999998864

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=95.03  E-value=0.015  Score=47.96  Aligned_cols=28  Identities=29%  Similarity=0.539  Sum_probs=22.9

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHH-HHHHh
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADN-LSKLL   87 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~-La~~~   87 (273)
                      +.+..+|+|+|.+|+||||+..+ +...+
T Consensus        12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~   40 (221)
T 3gj0_A           12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEF   40 (221)
T ss_dssp             CCCEEEEEEEECTTSSHHHHHTTBHHHHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCC
Confidence            34568999999999999999998 54444

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=95.00  E-value=0.0089  Score=53.93  Aligned_cols=26  Identities=19%  Similarity=0.491  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+-.+.|+||.||||||+.+.|+..+
T Consensus        25 ~Ge~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           25 SGEYFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCccHHHHHHHHHcCC
Confidence            56789999999999999999998654

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=94.98  E-value=0.017  Score=53.55  Aligned_cols=27  Identities=22%  Similarity=0.278  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .++..|+|+|++|+||||++..||..+
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l  124 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFL  124 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            356788889999999999999999766

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=94.98  E-value=0.015  Score=48.22  Aligned_cols=26  Identities=35%  Similarity=0.373  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ....+|+|+|.+|+||||+..+|...
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~   36 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKN   36 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHC
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcC
Confidence            45689999999999999999998753

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=94.96  E-value=0.014  Score=51.53  Aligned_cols=25  Identities=12%  Similarity=-0.118  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ++..++|.|+|||||||+|..++..
T Consensus        97 ~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           97 SQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            5778999999999999999999975

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=94.94  E-value=0.014  Score=52.85  Aligned_cols=24  Identities=29%  Similarity=0.390  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      +..++|+|++|+||||+.+.|+..
T Consensus       215 G~~~~lvG~sG~GKSTLln~L~g~  238 (358)
T 2rcn_A          215 GRISIFAGQSGVGKSSLLNALLGL  238 (358)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHCC
T ss_pred             CCEEEEECCCCccHHHHHHHHhcc
Confidence            568899999999999999999754

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=94.93  E-value=0.011  Score=47.26  Aligned_cols=23  Identities=17%  Similarity=0.228  Sum_probs=20.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLS   84 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La   84 (273)
                      +..+|+|+|.+|+||||+..+|.
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~   43 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLH   43 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CceEEEEECCCCCCHHHHHHHHH
Confidence            57899999999999999999884

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=94.93  E-value=0.014  Score=53.43  Aligned_cols=26  Identities=27%  Similarity=0.387  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+-.+.|+||.||||||+.+.|+..+
T Consensus        46 ~Ge~~~llGpsGsGKSTLLr~iaGl~   71 (390)
T 3gd7_A           46 PGQRVGLLGRTGSGKSTLLSAFLRLL   71 (390)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCCC
Confidence            57789999999999999999998643

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=94.91  E-value=0.013  Score=50.23  Aligned_cols=25  Identities=28%  Similarity=0.270  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .+..+|+|+|.||+||||+..+|..
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g   27 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTG   27 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHC
Confidence            3567899999999999999999975

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.90  E-value=0.016  Score=47.37  Aligned_cols=25  Identities=24%  Similarity=0.165  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ...+|+|+|.+|+||||+..+|...
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           24 IRKKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cCcEEEEECcCCCCHHHHHHHHhcC
Confidence            4578999999999999999998763

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=94.88  E-value=0.018  Score=50.90  Aligned_cols=27  Identities=19%  Similarity=0.265  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .++-.++|.|+||+||||++..++...
T Consensus        66 ~~G~l~li~G~pG~GKTtl~l~ia~~~   92 (315)
T 3bh0_A           66 KRRNFVLIAARPSMGKTAFALKQAKNM   92 (315)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            357789999999999999999998764

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=94.85  E-value=0.014  Score=52.74  Aligned_cols=26  Identities=27%  Similarity=0.340  Sum_probs=22.2

Q ss_pred             CCeEEEE--EcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVL--IGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi--~G~pGSGKsT~a~~La~~~   87 (273)
                      .+..++|  .|+||+||||+++.+++.+
T Consensus        49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~   76 (412)
T 1w5s_A           49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV   76 (412)
T ss_dssp             CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence            3456777  9999999999999999876

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=94.84  E-value=0.015  Score=51.52  Aligned_cols=25  Identities=16%  Similarity=0.024  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      +...++|+|+.||||||+.+.|...
T Consensus         3 ~i~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            3 PIAVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             cccEEEEEecCCCCHHHHHHHHHhh
Confidence            3567889999999999999999964

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=94.79  E-value=0.019  Score=45.92  Aligned_cols=24  Identities=21%  Similarity=0.241  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhC
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      ..+|+|+.||||||+.+.|.-.++
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHc
Confidence            778999999999999999987665

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=94.78  E-value=0.017  Score=55.12  Aligned_cols=29  Identities=21%  Similarity=0.314  Sum_probs=25.5

Q ss_pred             CCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           59 PPRRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        59 ~~~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+.++-++.|+||.||||||+.+.|+..+
T Consensus        21 ~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           21 TPKNNTILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             CCCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            45678899999999999999999998754

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=94.76  E-value=0.017  Score=50.78  Aligned_cols=24  Identities=29%  Similarity=0.342  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      +..+.|+|++||||||+.+.|+ ..
T Consensus       165 G~i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          165 GFICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred             CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence            5688999999999999999998 54

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=94.73  E-value=0.018  Score=49.89  Aligned_cols=25  Identities=20%  Similarity=0.256  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ...+|+|+|.||+||||+..+|...
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCC
Confidence            3578999999999999999999864

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=94.70  E-value=0.0094  Score=53.87  Aligned_cols=26  Identities=19%  Similarity=0.403  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+-.+.|+||.||||||+.+.|+..+
T Consensus        30 ~Ge~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           30 NGERFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            56789999999999999999998654

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=94.68  E-value=0.019  Score=53.47  Aligned_cols=23  Identities=13%  Similarity=0.185  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .++|.|+|||||||++..+++.+
T Consensus        47 ~~li~G~aGTGKT~ll~~~~~~l   69 (459)
T 3upu_A           47 HVTINGPAGTGATTLTKFIIEAL   69 (459)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            78899999999999999999877

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=94.67  E-value=0.019  Score=55.14  Aligned_cols=25  Identities=28%  Similarity=0.363  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ...++|.|+||+||||++..|...+
T Consensus       204 ~~~~~I~G~pGTGKTt~i~~l~~~l  228 (574)
T 3e1s_A          204 HRLVVLTGGPGTGKSTTTKAVADLA  228 (574)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4578899999999999999998765

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=94.66  E-value=0.018  Score=50.77  Aligned_cols=28  Identities=21%  Similarity=0.223  Sum_probs=22.9

Q ss_pred             CCCCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           59 PPRRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        59 ~~~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .|..+-.|.|+|.||+||||+..+|...
T Consensus         6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            3445678999999999999999999753

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=94.65  E-value=0.016  Score=50.95  Aligned_cols=25  Identities=20%  Similarity=0.203  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      +..+|+|+|+||+||||+..+|...
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCC
Confidence            5568999999999999999999753

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=94.64  E-value=0.022  Score=52.98  Aligned_cols=26  Identities=23%  Similarity=0.359  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-.++|.|+||+||||++..++...
T Consensus       202 ~G~liiI~G~pG~GKTtl~l~ia~~~  227 (454)
T 2r6a_A          202 RSDLIIVAARPSVGKTAFALNIAQNV  227 (454)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            56789999999999999999988754

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=94.63  E-value=0.013  Score=55.46  Aligned_cols=27  Identities=7%  Similarity=0.224  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      .+..++|+||+||||||+.+.|+..+.
T Consensus       259 ~g~~i~I~GptGSGKTTlL~aL~~~i~  285 (511)
T 2oap_1          259 HKFSAIVVGETASGKTTTLNAIMMFIP  285 (511)
T ss_dssp             TTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            355689999999999999999988763

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=94.61  E-value=0.0062  Score=49.44  Aligned_cols=24  Identities=29%  Similarity=0.362  Sum_probs=20.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLS   84 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La   84 (273)
                      ....+|+|+|.+|+||||+..+|.
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~   54 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFA   54 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSB
T ss_pred             CcceEEEEECCCCCCHHHHHHHHh
Confidence            456899999999999999987764

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=94.57  E-value=0.011  Score=48.71  Aligned_cols=26  Identities=12%  Similarity=0.074  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ...++|+|+|.+|+||||+..+|...
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~   52 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQ   52 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            35678999999999999999998764

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=94.56  E-value=0.024  Score=47.40  Aligned_cols=26  Identities=23%  Similarity=0.383  Sum_probs=21.1

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHH
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      |-+-.+|+|+|.+|+|||++..++..
T Consensus        10 P~k~~KivlvGd~~VGKTsLi~r~~~   35 (216)
T 4dkx_A           10 PLRKFKLVFLGEQSVGKTSLITRFMY   35 (216)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEECcCCcCHHHHHHHHHh
Confidence            34557899999999999999999875

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=94.56  E-value=0.024  Score=52.48  Aligned_cols=26  Identities=27%  Similarity=0.387  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++..|+|+|++||||||++..|+..+
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l  122 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYY  122 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            56788889999999999999999887

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=94.56  E-value=0.02  Score=53.08  Aligned_cols=25  Identities=24%  Similarity=0.432  Sum_probs=21.1

Q ss_pred             CCeE--EEEEcCCCCChhHHHHHHHHH
Q 024067           62 RGVQ--WVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        62 ~~~~--Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      +|..  +.|+|++||||||+.+.|+..
T Consensus        39 ~Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           39 QGFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             -CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            4445  999999999999999999864

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=94.50  E-value=0.017  Score=50.75  Aligned_cols=24  Identities=21%  Similarity=0.210  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      +..+.|+|++||||||+.+.|+..
T Consensus       169 geiv~l~G~sG~GKSTll~~l~g~  192 (301)
T 1u0l_A          169 GKISTMAGLSGVGKSSLLNAINPG  192 (301)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred             CCeEEEECCCCCcHHHHHHHhccc
Confidence            567899999999999999999743

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=94.49  E-value=0.02  Score=49.17  Aligned_cols=23  Identities=26%  Similarity=0.446  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ++|+|+|.|||||||+...|...
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            57999999999999999999764

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=94.46  E-value=0.021  Score=52.62  Aligned_cols=25  Identities=16%  Similarity=0.349  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+..+.|+|++||||||+.+.|+..
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl   92 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGI   92 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCC
Confidence            3458999999999999999999874

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=94.44  E-value=0.024  Score=50.39  Aligned_cols=31  Identities=29%  Similarity=0.303  Sum_probs=26.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      +.-++|.|++|+||||++..|.++ |...|+-
T Consensus       144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~d  174 (314)
T 1ko7_A          144 GVGVLITGDSGIGKSETALELIKR-GHRLVAD  174 (314)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT-TCEEEES
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHhc-CCceecC
Confidence            567999999999999999999886 7777754

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=94.37  E-value=0.0093  Score=57.62  Aligned_cols=27  Identities=26%  Similarity=0.497  Sum_probs=23.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVP   90 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~   90 (273)
                      ..++|+||||+|||++|+.|++.++..
T Consensus       328 ~~vLL~GppGtGKT~LAr~la~~~~r~  354 (595)
T 3f9v_A          328 IHILIIGDPGTAKSQMLQFISRVAPRA  354 (595)
T ss_dssp             CCEEEEESSCCTHHHHHHSSSTTCSCE
T ss_pred             cceEEECCCchHHHHHHHHHHHhCCCc
Confidence            379999999999999999999987643

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=94.33  E-value=0.0075  Score=48.81  Aligned_cols=25  Identities=12%  Similarity=0.183  Sum_probs=6.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      +..+|+|+|.+|+||||+..+|...
T Consensus        19 ~~~~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           19 LRCKVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEEEEC-----------------
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            4579999999999999999988753

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=94.31  E-value=0.027  Score=50.67  Aligned_cols=27  Identities=15%  Similarity=0.136  Sum_probs=24.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      ++-++.|+|++||||||+.+.|+....
T Consensus        70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~   96 (347)
T 2obl_A           70 IGQRIGIFAGSGVGKSTLLGMICNGAS   96 (347)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            577899999999999999999999875

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=94.29  E-value=0.026  Score=50.30  Aligned_cols=29  Identities=17%  Similarity=0.213  Sum_probs=22.8

Q ss_pred             CCCCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           57 GSPPRRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        57 ~~~~~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      |..| ++ .+.|.|+||+||||+|..++...
T Consensus        24 GGl~-~G-iteI~G~pGsGKTtL~Lq~~~~~   52 (333)
T 3io5_A           24 GGMQ-SG-LLILAGPSKSFKSNFGLTMVSSY   52 (333)
T ss_dssp             CCBC-SE-EEEEEESSSSSHHHHHHHHHHHH
T ss_pred             CCCc-CC-eEEEECCCCCCHHHHHHHHHHHH
Confidence            3334 46 68999999999999998887654

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=94.27  E-value=0.022  Score=53.92  Aligned_cols=22  Identities=18%  Similarity=0.350  Sum_probs=20.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNL   83 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~L   83 (273)
                      ++-.+.|+|++||||||+++.+
T Consensus        38 ~Ge~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           38 IGRSTLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHH
Confidence            6778999999999999999994

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=94.23  E-value=0.022  Score=50.14  Aligned_cols=24  Identities=17%  Similarity=0.325  Sum_probs=20.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      -...|+|+|++|+||||+.+.|..
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g   40 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFL   40 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhC
Confidence            356789999999999999999864

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=94.23  E-value=0.035  Score=47.11  Aligned_cols=27  Identities=19%  Similarity=0.075  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ..+.+.+++|++||||||.+-+++.++
T Consensus        17 ~~g~l~v~~G~MgsGKTT~lL~~~~r~   43 (234)
T 2orv_A           17 TRGQIQVILGPMFSGKSTELMRRVRRF   43 (234)
T ss_dssp             -CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHH
Confidence            357889999999999999999888877

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=94.22  E-value=0.028  Score=51.00  Aligned_cols=34  Identities=18%  Similarity=0.083  Sum_probs=27.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh-----CCCeechh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG   95 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~~   95 (273)
                      ++..++|.|+||+||||+|..++...     .+.+|++.
T Consensus        73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E  111 (366)
T 1xp8_A           73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE  111 (366)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence            56788899999999999999998764     35677764

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=94.19  E-value=0.027  Score=51.54  Aligned_cols=25  Identities=20%  Similarity=0.384  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .++.++.|+|+||+||||+.+.|..
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg   42 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITK   42 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHC
Confidence            4578999999999999999999987

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=94.11  E-value=0.025  Score=54.36  Aligned_cols=26  Identities=23%  Similarity=0.441  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      +|-.+.|+||.||||||+.+.|+..+
T Consensus       368 ~G~~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          368 QGKTVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            46789999999999999999999876

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=94.11  E-value=0.03  Score=51.97  Aligned_cols=28  Identities=25%  Similarity=0.368  Sum_probs=25.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEV   89 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~   89 (273)
                      ++-++.|+|++||||||+.+.|+.....
T Consensus       156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~~~  183 (438)
T 2dpy_A          156 RGQRMGLFAGSGVGKSVLLGMMARYTRA  183 (438)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence            5778999999999999999999998743

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=94.10  E-value=0.025  Score=50.17  Aligned_cols=31  Identities=26%  Similarity=0.281  Sum_probs=25.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      +.-|+|.|++|+||||+|..|.+ .|...|+-
T Consensus       147 g~gvli~G~sG~GKStlal~l~~-~G~~lv~D  177 (312)
T 1knx_A          147 GVGVLLTGRSGIGKSECALDLIN-KNHLFVGD  177 (312)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHT-TTCEEEEE
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH-cCCEEEeC
Confidence            56689999999999999999876 47777754

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=94.10  E-value=0.012  Score=48.36  Aligned_cols=25  Identities=32%  Similarity=0.466  Sum_probs=21.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      ....+|+|+|.+|+||||+..+|..
T Consensus         9 ~~~~ki~vvG~~~~GKSsli~~l~~   33 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKTTYINRVLD   33 (218)
T ss_dssp             -CEEEEEEECCTTSSHHHHHCBCTT
T ss_pred             cCccEEEEECCCCCCHHHHHHHHhc
Confidence            3567999999999999999988763

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=94.09  E-value=0.03  Score=48.37  Aligned_cols=24  Identities=25%  Similarity=0.336  Sum_probs=21.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ..+|+|+|.||+||||+..+|...
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~   26 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGS   26 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCC
Confidence            578999999999999999999764

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=94.07  E-value=0.032  Score=51.55  Aligned_cols=25  Identities=16%  Similarity=0.359  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ...+|+|+|+||+||||+..+|...
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~  203 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNK  203 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999999999999999865

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=93.09  E-value=0.0094  Score=48.49  Aligned_cols=25  Identities=20%  Similarity=0.345  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .+..+|+|+|.+|+||||+..+|..
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~   52 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTT   52 (204)
Confidence            3578999999999999999988864

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=94.00  E-value=0.032  Score=52.86  Aligned_cols=26  Identities=12%  Similarity=0.176  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-.+.|.|++||||||+++.|+...
T Consensus       280 ~G~i~~i~G~~GsGKSTLl~~l~g~~  305 (525)
T 1tf7_A          280 KDSIILATGATGTGKTLLVSRFVENA  305 (525)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            56789999999999999999998764

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=93.99  E-value=0.49  Score=42.23  Aligned_cols=115  Identities=15%  Similarity=0.054  Sum_probs=55.2

Q ss_pred             EEEEcCCCCChhH-------HHHHHHHHhCCCeech---hHHHH-HHcc-CCChHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 024067           66 WVLIGDPGVKKHV-------YADNLSKLLEVPHISM---GSLVR-QELS-PRSALYKQIANAVNEGKLVPEDVIFALLSK  133 (273)
Q Consensus        66 Ivi~G~pGSGKsT-------~a~~La~~~g~~~is~---~dllr-~~~~-~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~  133 (273)
                      |+|+||.+.|--+       +-..|-++|+..+.-+   .|+.. +.-. .....+..+......+..  .+ +..-+..
T Consensus       145 vvlvGP~~~g~~~td~m~~~l~d~l~~~F~~~i~~tR~~~d~~~~~r~~~~~~~~~~~~e~~~~~~~~--~e-v~seVe~  221 (337)
T 4dey_A          145 VVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISITRVTADISLAKRSVLNNPSKHAIIERSNTRSSL--AE-VQSEIER  221 (337)
T ss_dssp             EEEECSSCTTSHHHHHHHHHHHHHHHHHTTTSEEEEEECSCGGGC-------------------CCCH--HH-HHHHHHH
T ss_pred             eEEECCccccchhHHHHHHHHHHhhHHhcCCccceEeecchhhhcchhhhhcccchhhhcccccccch--HH-HHhHHHH
Confidence            8899999999864       6777778887652211   01111 0000 000011122222222221  11 2223333


Q ss_pred             HHHhcccCCcceEEEeCCCC-CHHHHHHHHhhCCCceEEEEcc-CHHHHHHHHhcCC
Q 024067          134 RLEEGYYRGESGFILDGIPR-TRIQAEILDQIVDVDLVINFKS-IEDQLVKRNLESE  188 (273)
Q Consensus       134 ~l~~~~~~~~~g~IlDg~P~-~~~qa~~l~~~~~~d~vI~L~~-~~e~l~~Rl~~R~  188 (273)
                      .+...  ..++.+|||--+. ...|...  ....+ ++||+.. +.++|.+|+.+|+
T Consensus       222 i~~v~--~~Gk~vILDIDvQnGa~qlk~--~~~~~-i~IFI~PPS~eeLe~RL~~RG  273 (337)
T 4dey_A          222 IFELA--RTLQLVVLDADTINHPAQLSK--TSLAP-IVVYVKISSPKVLQRLIKSRG  273 (337)
T ss_dssp             HHHHT--TTCCEEEEEETTCCSGGGTTT--SSCCC-EEEEECCSCHHHHHHHHHTTC
T ss_pred             HHHHH--hCCCEEEEEeCcHHHHHHHHh--cCCCC-EEEEEECcCHHHHHHHHHhCC
Confidence            33332  2357899997665 5555431  11233 4555554 5799999999887

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=93.99  E-value=0.024  Score=54.51  Aligned_cols=27  Identities=22%  Similarity=0.421  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      ++-.+.|+||.||||||+.+.|+..+.
T Consensus       368 ~G~~~~ivG~sGsGKSTLl~~l~g~~~  394 (582)
T 3b60_A          368 AGKTVALVGRSGSGKSTIASLITRFYD  394 (582)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhccC
Confidence            467899999999999999999987763

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=93.93  E-value=0.036  Score=51.36  Aligned_cols=26  Identities=15%  Similarity=0.279  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-.++|.|+||+||||++..++...
T Consensus       199 ~G~l~ii~G~pg~GKT~lal~ia~~~  224 (444)
T 2q6t_A          199 PGSLNIIAARPAMGKTAFALTIAQNA  224 (444)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            56789999999999999999998754

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=93.93  E-value=0.034  Score=48.89  Aligned_cols=25  Identities=20%  Similarity=0.264  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ...+|+|+|.||+||||+..+|...
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~   26 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSN   26 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3578999999999999999998754

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=93.90  E-value=0.033  Score=53.11  Aligned_cols=27  Identities=22%  Similarity=0.314  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ..+-++.|+|+.||||||+.+.|+..+
T Consensus        45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           45 KEGMVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998754

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=93.84  E-value=0.094  Score=57.08  Aligned_cols=85  Identities=11%  Similarity=0.068  Sum_probs=48.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRL  135 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l  135 (273)
                      .++..|+|+||||+||||+|..++..-     .+.+|++.+.+......  .+|..+.++. --...+.+.....+...+
T Consensus      1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~--~~G~dl~~l~-v~~~~~~E~~l~~~~~lv 1501 (2050)
T 3cmu_A         1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAR--KLGVDIDNLL-CSQPDTGEQALEICDALA 1501 (2050)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHH--HTTCCTTTCE-EECCSSHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHH--HcCCCchhce-eecCChHHHHHHHHHHHH
Confidence            367899999999999999999997764     24577775433211100  0000000000 002234455555665555


Q ss_pred             HhcccCCcceEEEeCC
Q 024067          136 EEGYYRGESGFILDGI  151 (273)
Q Consensus       136 ~~~~~~~~~g~IlDg~  151 (273)
                      ++.   ...-+|+|.+
T Consensus      1502 r~~---~~~lVVIDsi 1514 (2050)
T 3cmu_A         1502 RSG---AVDVIVVDSV 1514 (2050)
T ss_dssp             HHT---CCSEEEESCG
T ss_pred             hcC---CCCEEEEcCh
Confidence            554   2477899975

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=93.81  E-value=0.034  Score=48.00  Aligned_cols=25  Identities=16%  Similarity=0.125  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ..++|+|+|.||+||||+..+|...
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~g~   49 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFVGR   49 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHCC
Confidence            4579999999999999999999754

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=93.80  E-value=0.012  Score=52.15  Aligned_cols=25  Identities=24%  Similarity=0.296  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ++..++|+|++|+||||+.+.|+..
T Consensus       172 ~G~~~~lvG~sG~GKSTLln~L~g~  196 (307)
T 1t9h_A          172 QDKTTVFAGQSGVGKSSLLNAISPE  196 (307)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred             CCCEEEEECCCCCCHHHHHHHhccc
Confidence            3678999999999999999998643

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=93.76  E-value=0.026  Score=54.40  Aligned_cols=27  Identities=22%  Similarity=0.400  Sum_probs=23.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      ++-.+.|+||.||||||+.+.|+..+.
T Consensus       380 ~G~~~~ivG~sGsGKSTll~~l~g~~~  406 (598)
T 3qf4_B          380 PGQKVALVGPTGSGKTTIVNLLMRFYD  406 (598)
T ss_dssp             TTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence            467899999999999999999987763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	273
d1ak2a1	190	c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Co	2e-19
d1ukza_	196	c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Sac	6e-17
d1s3ga1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	2e-16
d2ak3a1	189	c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow	3e-16
d2cdna1	181	c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium	9e-16
d1zina1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	9e-16
d1teva_	194	c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens)	8e-15
d1e4va1	179	c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Esc	3e-13
d3adka_	194	c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [	5e-13
d1qf9a_	194	c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoi	4e-12
d1zaka1	189	c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Mai	5e-12
d1akya1	180	c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Bak	7e-11
d2bdta1	176	c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B	0.002

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

 Score = 81.1 bits (199), Expect = 2e-19
 Identities = 58/201 (28%), Positives = 95/201 (47%), Gaps = 22/201 (10%)

Query: 62  RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL 121
           +GV+ VL+G PG  K   A  L+K   V H++ G ++R  ++  S L K++   ++ GKL
Sbjct: 2   KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKL 61

Query: 122 VPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIV-----DVDLVINFKSI 176
           V ++++  L+ K LE    +  +GF+LDG PRT  QAE+LD ++      +D VI F   
Sbjct: 62  VSDEMVLELIEKNLETPPCK--NGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIP 119

Query: 177 EDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRK 236
           +  L++R       S   +                A K +   Y  Q   L +YYSK+  
Sbjct: 120 DSLLIRRITGRLIHSDDNKK---------------ALKIRLEAYHTQTTPLVEYYSKRGI 164

Query: 237 LLNFQVAAAPGETWQGLLSAL 257
                 +  P   +  +L+A 
Sbjct: 165 HSAIDASQTPDVVFASILAAF 185

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.0 bits (183), Expect = 6e-17
 Identities = 47/202 (23%), Positives = 91/202 (45%), Gaps = 15/202 (7%)

Query: 58  SPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSP-RSALYKQIANAV 116
           SP +  V   ++G PG  K    + L K     H+S G L+R E     S   + I N +
Sbjct: 4   SPDQVSVI-FVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCI 62

Query: 117 NEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQ-IVDVDLVINFKS 175
            EG++VP+++  ALL   + +     +  F++DG PR   QA   ++ IV+   ++ F  
Sbjct: 63  KEGQIVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDC 122

Query: 176 IEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQR 235
            ED +++R LE    S   +                + K++F  + E    + +Y+  + 
Sbjct: 123 PEDIMLERLLERGKTSGRSDDNI------------ESIKKRFNTFKETSMPVIEYFETKS 170

Query: 236 KLLNFQVAAAPGETWQGLLSAL 257
           K++  +   +  + ++ +  A+
Sbjct: 171 KVVRVRCDRSVEDVYKDVQDAI 192

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

 Score = 73.0 bits (178), Expect = 2e-16
 Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 17/191 (8%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           VL+G PG  K   AD + +    PHIS G + R  +   + L  +  + +++G LVP++V
Sbjct: 4   VLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEV 63

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLE 186
              ++ +R        ++GF+LDG PRT  QAE LDQ++                    +
Sbjct: 64  TIGIVRER--LSKSDCDNGFLLDGFPRTVPQAEALDQLL---------------ADMGRK 106

Query: 187 SEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAP 246
            E     +       AR +A D       +  +   Q   L  +Y  +  L+N       
Sbjct: 107 IEHVLNIQVEKEELIARLTADDNPDTVTNRLEVNMNQTAPLLAFYDSKEVLVNINGQKDI 166

Query: 247 GETWQGLLSAL 257
            + ++ L   L
Sbjct: 167 KDVFKDLDVIL 177

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

 Score = 72.9 bits (178), Expect = 3e-16
 Identities = 46/199 (23%), Positives = 83/199 (41%), Gaps = 26/199 (13%)

Query: 60  PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEG 119
             R ++  ++G PG  K   +  ++K  E+ H+S G L+R  +   + +       +++G
Sbjct: 3   SARLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQG 62

Query: 120 KLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQ 179
           KL+P+DV+       L E     +  ++LDG PRT  QAE LD+   +D VIN     + 
Sbjct: 63  KLIPDDVMT---RLVLHELKNLTQYNWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEV 119

Query: 180 LVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLN 239
           + +R                        D      ++ + Y  Q + + +YY K+  L  
Sbjct: 120 IKQRL----------------------TDRPETVVKRLKAYEAQTEPVLEYYRKKGVLET 157

Query: 240 FQVAAAPGETWQGLLSALH 258
           F       + W  + + L 
Sbjct: 158 FS-GTETNKIWPHVYAFLQ 175

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 71.5 bits (174), Expect = 9e-16
 Identities = 51/196 (26%), Positives = 85/196 (43%), Gaps = 25/196 (12%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           +L+G PG  K   A  L++ L +P IS G L R+ +   + L  +    ++ G LVP D+
Sbjct: 4   LLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDL 63

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLV 181
              L+  RL        +GFILDG PR+  QA+ L ++      D+D V+ F+  E+ L+
Sbjct: 64  TNELVDDRLNN--PDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLL 121

Query: 182 KRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQ 241
           +R           +                    + ++Y ++   L +YY  Q K ++  
Sbjct: 122 ERLKGRGRADDTDDV----------------ILNRMKVYRDETAPLLEYYRDQLKTVD-- 163

Query: 242 VAAAPGETWQGLLSAL 257
                 E +   L AL
Sbjct: 164 AVGTMDEVFARALRAL 179

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 71.1 bits (173), Expect = 9e-16
 Identities = 46/191 (24%), Positives = 79/191 (41%), Gaps = 17/191 (8%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           VL+G PG  K   A+ +     +PHIS G + R  +   + L  Q    ++ G LVP++V
Sbjct: 4   VLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEV 63

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLE 186
              ++ +RL +     ++GF+LDG PRT  QAE                +E  L     +
Sbjct: 64  TIGIVRERLSKDDC--QNGFLLDGFPRTVAQAEA---------------LETMLADIGRK 106

Query: 187 SEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAP 246
            +          +   R +A D  +    +  +  +Q K L D+Y ++  L N       
Sbjct: 107 LDYVIHIDVRQDVLMERLTADDNEATVANRLEVNMKQMKPLVDFYEQKGYLRNINGEQDM 166

Query: 247 GETWQGLLSAL 257
            + +  +   L
Sbjct: 167 EKVFADIRELL 177

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.8 bits (167), Expect = 8e-15
 Identities = 40/198 (20%), Positives = 84/198 (42%), Gaps = 19/198 (9%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS-PRSALYKQIANAVNEGKLVPED 125
            ++G PG  K      + +     H+S G L+R E   P S   + I   + EGK+VP +
Sbjct: 5   FVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVE 64

Query: 126 VIFALLSKRLEEGY--YRGESGFILDGIPRTRIQAEILDQIV----DVDLVINFKSIEDQ 179
           +  +LL + +++       ++ F++DG PR +   +  ++ +    DV  V+ F    + 
Sbjct: 65  ITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEI 124

Query: 180 LVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLN 239
            ++R LE    S   +  R             + +++ + Y +  K + D Y +  K+  
Sbjct: 125 CIERCLERGKSSGRSDDNR------------ESLEKRIQTYLQSTKPIIDLYEEMGKVKK 172

Query: 240 FQVAAAPGETWQGLLSAL 257
              + +  E +  ++   
Sbjct: 173 IDASKSVDEVFDEVVQIF 190

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

 Score = 64.6 bits (156), Expect = 3e-13
 Identities = 45/177 (25%), Positives = 80/177 (45%), Gaps = 23/177 (12%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           +L+G P   K   A  + +   +P IS G ++R  +   S L KQ  + ++ GKLV +++
Sbjct: 4   ILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDEL 63

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNL 185
           + AL+ +R         +GF+LDG PRT  QA+ + +  ++VD V+ F   ++ +V    
Sbjct: 64  VIALVKER--IAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVD--- 118

Query: 186 ESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQV 242
                            R    D     +++   Y +    L  YYSK+ +  N + 
Sbjct: 119 -----------------RIVKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKY 158

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 64.2 bits (155), Expect = 5e-13
 Identities = 34/191 (17%), Positives = 77/191 (40%), Gaps = 12/191 (6%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
            ++G PG  K    + + +     H+S G L+R E+S  SA  K ++  + +G+LVP + 
Sbjct: 12  FVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLET 71

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLE 186
           +  +L   +         GF++DG PR   Q E  ++ +    ++ +     + + + L 
Sbjct: 72  VLDMLRDAMVA-KVDTSKGFLIDGYPREVKQGEEFERKIGQPTLLLYVDAGPETMTKRLL 130

Query: 187 SEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAP 246
               +  +             D     K++   Y +  + +  +Y K+  +       + 
Sbjct: 131 KRGETSGR-----------VDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSV 179

Query: 247 GETWQGLLSAL 257
            + +  + + L
Sbjct: 180 DDVFSQVCTHL 190

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 61.5 bits (148), Expect = 4e-12
 Identities = 44/195 (22%), Positives = 78/195 (40%), Gaps = 19/195 (9%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
            ++G PG  K     N+ +     H+S G L+RQE    S   + IA  +  G++VP  V
Sbjct: 10  FVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIV 69

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILD----QIVDVDLVINFKSIEDQLVK 182
              LL   ++    +    F++DG PR        +      VD   V+ F   E+ + +
Sbjct: 70  TVKLLKNAIDANQGK---NFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQ 126

Query: 183 RNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQV 242
           R             L+ G +   + D   + K++F  +  Q K + D+Y+K  K+     
Sbjct: 127 R------------LLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPA 174

Query: 243 AAAPGETWQGLLSAL 257
                E +  + +  
Sbjct: 175 NRDVNEVYNDVENLF 189

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 61.0 bits (147), Expect = 5e-12
 Identities = 37/191 (19%), Positives = 76/191 (39%), Gaps = 22/191 (11%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           ++ G P   K    + +    ++ HIS G L+R E++  S   K+    + +G+LVP+++
Sbjct: 7   MISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEI 66

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLE 186
           +  ++ +R        E+G++LDG PR+  QA  L+ +           + D+L+   + 
Sbjct: 67  VVNMVKER-LRQPDAQENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVV 125

Query: 187 SEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAP 246
            +                         K +   Y +  +SL   Y  +  ++  Q  A  
Sbjct: 126 FDDTEEK-------------------VKLRLETYYQNIESLLSTY--ENIIVKVQGDATV 164

Query: 247 GETWQGLLSAL 257
              +  +   L
Sbjct: 165 DAVFAKIDELL 175

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.6 bits (138), Expect = 7e-11
 Identities = 48/194 (24%), Positives = 85/194 (43%), Gaps = 19/194 (9%)

Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           ++ VLIG PG  K   A NL +     H++ G ++R +++  + L  +    +++G LV 
Sbjct: 3   IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVS 62

Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKR 183
           +D++  ++   L       ++GFILDG PRT  QAE LDQ++        K+IE ++   
Sbjct: 63  DDIMVNMIKDELTNNPAC-KNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDE 121

Query: 184 NLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVA 243
            L +   +                      K++   Y  Q + + D+Y K         +
Sbjct: 122 LLVARITNADA------------------LKKRLAAYHAQTEPIVDFYKKTGIWAGVDAS 163

Query: 244 AAPGETWQGLLSAL 257
             P   W  +L+ L
Sbjct: 164 QPPATVWADILNKL 177

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 15/121 (12%), Positives = 32/121 (26%), Gaps = 4/121 (3%)

Query: 66  WVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPED 125
           +++ G  GV K      L+  L+      G ++   +        +     +E   +   
Sbjct: 5   YIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWES----DELLALTWK 60

Query: 126 VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNL 185
            I  L    L                     Q             I   +  ++L++R+ 
Sbjct: 61  NITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDA 120

Query: 186 E 186
            
Sbjct: 121 L 121

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	273
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	100.0
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	100.0
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	100.0
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	100.0
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	100.0
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	100.0
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	100.0
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	100.0
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	100.0
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	100.0
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	100.0
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	99.97
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	99.76
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	99.74
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	99.71
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	99.7
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	99.69
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	99.68
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	99.68
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	99.67
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	99.65
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	99.63
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	99.63
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	99.6
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	99.56
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	99.54
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	99.53
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	99.51
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	99.5
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	99.5
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	99.46
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	99.44
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	99.4
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	99.39
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	99.38
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	99.22
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	99.2
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	99.17
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	99.1
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	99.1
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	99.09
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	99.07
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	99.04
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	99.01
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	98.96
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	98.94
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	98.91
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.87
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.64
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	98.57
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	98.49
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	98.48
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	98.43
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	98.24
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	98.18
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	98.1
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.92
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.9
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.84
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.82
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.8
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.79
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.76
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.75
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.74
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.69
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.69
d2axpa1	164	Hypothetical protein YorR {Bacillus subtilis [TaxI	97.63
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	97.61
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	97.59
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	97.52
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.48
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.46
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.45
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	97.45
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.38
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.35
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.31
d1okkd2	207	GTPase domain of the signal recognition particle r	97.24
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.21
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.21
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.1
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.1
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.09
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.06
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	97.05
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.05
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	97.03
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.03
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.92
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.84
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	96.7
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	96.69
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.69
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.64
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.62
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.62
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.61
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	96.57
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.53
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.48
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.45
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.43
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.36
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.35
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	96.29
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	96.27
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.25
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.24
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.23
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.19
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.19
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.18
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.15
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.14
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.11
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.11
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.07
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.06
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.03
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.01
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	95.98
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.97
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	95.97
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.96
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	95.94
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.92
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	95.9
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	95.9
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	95.88
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	95.88
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	95.88
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	95.88
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.86
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	95.85
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	95.84
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	95.82
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	95.82
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	95.81
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	95.78
d1g2912	240	Maltose transport protein MalK, N-terminal domain	95.77
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	95.77
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	95.76
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	95.75
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	95.75
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	95.75
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	95.69
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.69
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	95.67
d1nrjb_	209	Signal recognition particle receptor beta-subunit	95.65
d2fh5b1	207	Signal recognition particle receptor beta-subunit	95.64
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.61
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	95.6
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	95.6
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	95.6
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	95.6
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	95.59
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.56
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	95.55
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	95.52
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	95.52
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	95.51
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	95.51
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.51
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.48
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	95.47
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	95.46
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.45
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	95.43
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	95.42
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	95.42
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	95.41
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.4
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	95.37
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.32
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	95.31
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	95.31
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	95.3
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	95.28
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	95.27
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	95.25
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	95.24
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	95.22
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	95.18
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	95.07
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.02
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	95.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	94.97
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	94.95
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	94.94
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	94.91
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.9
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	94.85
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	94.79
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.77
d1tuea_	205	Replication protein E1 helicase domain {Human papi	94.77
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.75
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	94.72
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	94.59
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	94.55
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	94.48
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	94.46
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	94.39
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	94.39
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	94.34
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	94.33
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	94.32
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	94.17
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	94.14
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.06
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	94.01
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	94.0
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	93.98
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	93.91
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	93.83
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.73
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	93.64
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	93.62
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	93.57
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	93.27
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	93.18
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	93.11
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	92.98
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	92.7
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	92.59
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	92.14
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	91.95
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	91.84
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	91.73
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	91.49
d1xpua3	289	Transcription termination factor Rho, ATPase domai	91.44
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	91.32
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	90.99
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	90.84
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	90.78
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	90.58
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	90.25
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	89.84
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	89.84
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	89.73
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	89.71
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	89.37
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	89.15
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	88.97
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	88.21
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	88.12
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	87.9
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	87.76
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	87.72
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	87.68
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	87.4
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	87.23
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	87.04
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	86.88
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	86.82
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	86.76
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	86.01
d1e4va2	35	Microbial and mitochondrial ADK, insert "zinc fing	85.98
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	85.72
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	85.5
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	85.15
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	84.51
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	84.37
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	83.79
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	82.98
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	82.69
d1akya2	38	Microbial and mitochondrial ADK, insert "zinc fing	82.67
d2ak3a2	37	Microbial and mitochondrial ADK, insert "zinc fing	82.47
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	82.16
d1zina2	35	Microbial and mitochondrial ADK, insert "zinc fing	81.68
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	80.78
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	80.57
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	80.05

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=100.00  E-value=1.2e-35  Score=247.57  Aligned_cols=179  Identities=25%  Similarity=0.438  Sum_probs=165.6

Q ss_pred             CCCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc
Q 024067           59 PPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEG  138 (273)
Q Consensus        59 ~~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~  138 (273)
                      .|.|+++|+|+|||||||||+|+.||++||++|||+|+++++++...++.+..+++++..|..+|++++..++.+.+...
T Consensus         2 ~~~r~mrIiliG~PGSGKtT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~   81 (189)
T d2ak3a1           2 ASARLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRLVLHELKNL   81 (189)
T ss_dssp             CSSCCCEEEEECCTTSSHHHHHHHHHHHBCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCcceeEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhhhhhhHHHHHHhhhhhhccchhhhhhhhhhhhhh
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999988765


Q ss_pred             ccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHH
Q 024067          139 YYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFR  218 (273)
Q Consensus       139 ~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~  218 (273)
                         ...|||+||||++..|++.|+....|+.||+|+|+++++.+|+..|                      ++.+++|++
T Consensus        82 ---~~~~~ildGfPr~~~q~~~l~~~~~~~~vi~L~v~~~~l~~R~~~r----------------------~e~~~kr~~  136 (189)
T d2ak3a1          82 ---TQYNWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTDR----------------------PETVVKRLK  136 (189)
T ss_dssp             ---TTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHTGS----------------------HHHHHHHHH
T ss_pred             ---hhcCcccccccchhhHHHHhhhcCcceEEEEEeccchhhhhhcccc----------------------hHHHHHHHH
Confidence               3578999999999999999998889999999999999999998554                      457899999


Q ss_pred             HHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcCCC
Q 024067          219 IYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHMN  263 (273)
Q Consensus       219 ~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~~~  263 (273)
                      .|.++..++.+||++.++++.+|+. ++++||++|.+.|..+...
T Consensus       137 ~y~~~~~~v~~~Y~~~~~l~~idg~-~~~eV~~~I~~~i~~~l~~  180 (189)
T d2ak3a1         137 AYEAQTEPVLEYYRKKGVLETFSGT-ETNKIWPHVYAFLQTKLPQ  180 (189)
T ss_dssp             HHHHHHHHHHHHHHHHTCEEEEECS-SHHHHHHHHHHHHHTTSCB
T ss_pred             HHHHHHHHHHHHHHhcCCEEEECCC-ChHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999986 5899999999999987653

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=100.00  E-value=4.1e-35  Score=243.42  Aligned_cols=181  Identities=33%  Similarity=0.520  Sum_probs=166.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~  141 (273)
                      ++++|+|+|||||||||+|+.||++||++||++++++|++...++..|..+..++.+|..++++.+..++...+....  
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~~~g~~~i~~gdllr~~~~~~~~~g~~~~~~~~~g~~~~~~~v~~~~~~~l~~~~--   79 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPP--   79 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGG--
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCcccchhhhhhccCCccccceeeeeehhhhcccc--
Confidence            688999999999999999999999999999999999999888889999999999999999999999999999997653  


Q ss_pred             CcceEEEeCCCCCHHHHHHHHhh-----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHH
Q 024067          142 GESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEK  216 (273)
Q Consensus       142 ~~~g~IlDg~P~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~r  216 (273)
                      ..+|||+||||++..|+..|...     ..+.++++|+++++.+.+|+..|....               +++++.+++|
T Consensus        80 ~~~g~ii~g~pr~~~qa~~l~~~~~~~~~~~~~~~~l~v~~~~~~~r~~~r~~~~---------------d~~~e~i~~R  144 (190)
T d1ak2a1          80 CKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHS---------------DDNKKALKIR  144 (190)
T ss_dssp             GTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECC---------------CCCHHHHHHH
T ss_pred             ccCceeecccccchhHHHHHHHHhhhccccccccccccchHHHHHhhhccCCCCC---------------chhhHHHHHH
Confidence            36899999999999999988643     467899999999999999999997533               6778999999


Q ss_pred             HHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067          217 FRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL  259 (273)
Q Consensus       217 l~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~  259 (273)
                      +..|.+...|+.+||.+.+.++.||++++++||+++|++.|..
T Consensus       145 ~~~y~~~~~p~~~~y~~~~~~~~Id~~~s~eeV~~~I~~~l~k  187 (190)
T d1ak2a1         145 LEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSK  187 (190)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999864

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=100.00  E-value=3.4e-34  Score=238.41  Aligned_cols=186  Identities=24%  Similarity=0.344  Sum_probs=166.8

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcc
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY  139 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~  139 (273)
                      ..+|.+|+|+|||||||||+|++||++||++||+++++++++.....+.+..++.++.+|..++++....++..++... 
T Consensus         3 ~~kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   81 (194)
T d1qf9a_           3 KSKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDAN-   81 (194)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTS-
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHCCceEchhhHHHHHhhhhhhhhhhhhhHhhhccccchHHHHHHHHHHhhhh-
Confidence            3578899999999999999999999999999999999999998888899999999999999999999988888877764 


Q ss_pred             cCCcceEEEeCCCCCHHHHHHHHhh----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHH
Q 024067          140 YRGESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKE  215 (273)
Q Consensus       140 ~~~~~g~IlDg~P~~~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~  215 (273)
                        ...+||+||||++..|+..|+..    ..|+++|+|+|+++++.+|+.+|+...            .+.+++++.+++
T Consensus        82 --~~~~~i~dg~p~~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~R~~~~~~~~------------~~~~d~~e~~~~  147 (194)
T d1qf9a_          82 --QGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESS------------GRSDDNIESIKK  147 (194)
T ss_dssp             --TTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTS------------CCTTCSHHHHHH
T ss_pred             --hcCCeEEEecchhhhhHHHHHhhhhhcccccEEEEeecchHHHHHHHHhhcccc------------ccccccHHHHHH
Confidence              35789999999999999988653    468999999999999999998876422            145778899999


Q ss_pred             HHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067          216 KFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ  260 (273)
Q Consensus       216 rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~  260 (273)
                      |+..|++...++.+||++.+.++.||+++++++|+++|...|...
T Consensus       148 Rl~~y~~~~~~~~~~y~~~~~~~~Id~~~~ieeV~~~I~~ii~~~  192 (194)
T d1qf9a_         148 RFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFKSM  192 (194)
T ss_dssp             HHHHHHHTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999999999998753

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1.8e-34  Score=240.54  Aligned_cols=185  Identities=21%  Similarity=0.354  Sum_probs=166.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~  141 (273)
                      +++.|+|+|||||||||+|+.|+++||++||++++++++.....+..|..+.+++.+|..+|++++..++..++....+ 
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~g~~~is~g~llr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-   85 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVLDMLRDAMVAKVD-   85 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHTCCEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTTT-
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeeEeccHHHHHHHHHhHhhhhhhHHHHhhccCCchheeeeehhhhhhhccc-
Confidence            5678999999999999999999999999999999999999988899999999999999999999999999999976543 


Q ss_pred             CcceEEEeCCCCCHHHHHHHHhh-CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHH
Q 024067          142 GESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIY  220 (273)
Q Consensus       142 ~~~g~IlDg~P~~~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y  220 (273)
                      ..+|||+||||++..|++.++.. ..+..++++.++.+++.+|...+....            .+.+|+++.+++|++.|
T Consensus        86 ~~~g~ildg~pr~~~qa~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~------------~r~~d~~e~i~~R~~~y  153 (194)
T d3adka_          86 TSKGFLIDGYPREVKQGEEFERKIGQPTLLLYVDAGPETMTKRLLKRGETS------------GRVDDNEETIKKRLETY  153 (194)
T ss_dssp             TCSCEEEESCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHH------------TCCCCCSTTHHHHHHHH
T ss_pred             ccccceeeeccchhHHHHHHHHHhCCccchhccccchhhhHhHhhhhcccc------------cCCcchHHHHHHHHHHH
Confidence            47899999999999999999764 578999999999999999987664321            13466778899999999


Q ss_pred             HHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067          221 AEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL  259 (273)
Q Consensus       221 ~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~  259 (273)
                      ++...|+++||++.+.++.||++++++|||++|...|+.
T Consensus       154 ~~~~~~~~~~y~~~~~~~~Id~~~s~~eV~~~I~~~i~~  192 (194)
T d3adka_         154 YKATEPVIAFYEKRGIVRKVNAEGSVDDVFSQVCTHLDT  192 (194)
T ss_dssp             HHHTHHHHHHHTTTTCEEEEECCSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999874

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-33  Score=232.79  Aligned_cols=173  Identities=29%  Similarity=0.517  Sum_probs=157.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG  142 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~  142 (273)
                      .++|+|+|||||||||+|+.||++||++||++++++++.....++.|..++.++..|..++++....++..++....+ .
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~~g~~~i~~~d~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~   80 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPA-C   80 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGG-G
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCceEeccccceeccccCChHHHHHHHHHhhhcccccchhHHHHHHHHhcCcc-c
Confidence            468999999999999999999999999999999999999989999999999999999999999999999888877543 3


Q ss_pred             cceEEEeCCCCCHHHHHHHHhh-----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHH
Q 024067          143 ESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKF  217 (273)
Q Consensus       143 ~~g~IlDg~P~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl  217 (273)
                      ..|||+||||++..|++.++..     ..|+++|+|+++++++.+|+..+                       +.+.+|+
T Consensus        81 ~~g~i~dg~p~~~~q~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~~-----------------------~~~~~r~  137 (180)
T d1akya1          81 KNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITNA-----------------------DALKKRL  137 (180)
T ss_dssp             GSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHSH-----------------------HHHHHHH
T ss_pred             cCCEeccCccchhhhHHHHHhhHHHcCCCceeeeecccccchhhhccccc-----------------------ccccchH
Confidence            6899999999999999877543     46899999999999999998654                       3678999


Q ss_pred             HHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067          218 RIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL  259 (273)
Q Consensus       218 ~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~  259 (273)
                      ..|++...|+.+||++.++++.||+++++++|+++|+..|..
T Consensus       138 ~~y~~~~~~v~~~y~~~~~~~~Id~~~~~eeV~~~I~~~l~k  179 (180)
T d1akya1         138 AAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLGK  179 (180)
T ss_dssp             HHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence            999999999999999999999999999999999999999864

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-33  Score=233.85  Aligned_cols=186  Identities=22%  Similarity=0.400  Sum_probs=164.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHcc-CCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccc-
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS-PRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY-  140 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~-~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~-  140 (273)
                      |++|+|+|||||||||+|++||++||+.||++++++|++.. ..++.++.+..++.+|..++++.+..++...+....+ 
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g~~~i~~g~llR~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~   80 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAA   80 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCceEcHHHHHHHHHHhhhhhHHHHHHHHHhcCCccccchhhHHHHHhhcccchh
Confidence            68999999999999999999999999999999999998764 5678999999999999999999999998887765432 


Q ss_pred             -CCcceEEEeCCCCCHHHHHHHHhh----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHH
Q 024067          141 -RGESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKE  215 (273)
Q Consensus       141 -~~~~g~IlDg~P~~~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~  215 (273)
                       ....+|++||||++..|+..++..    ..++.+|+++++.+++.+|+.+|....            .+.+++++.+++
T Consensus        81 ~~~~~~~~~~g~pr~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~r~~~R~~~~------------~r~~~~~e~i~~  148 (194)
T d1teva_          81 NAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSS------------GRSDDNRESLEK  148 (194)
T ss_dssp             CTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTS------------SCCSCCHHHHHH
T ss_pred             hhcccceeeccchhhHHHHHHHhhhhhccccccEEEeecCcchhheeecccCCCcc------------cCCccchHHHHH
Confidence             346899999999999999988654    357899999999999999999886432            145778899999


Q ss_pred             HHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067          216 KFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ  260 (273)
Q Consensus       216 rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~  260 (273)
                      |++.|++...++.+||++.++++.||++++++||+++|++.|+.+
T Consensus       149 r~~~y~~~~~~l~~~y~~~~~~~~IDa~~s~eeV~~~I~~il~k~  193 (194)
T d1teva_         149 RIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDKE  193 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999998764

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-33  Score=234.59  Aligned_cols=189  Identities=24%  Similarity=0.426  Sum_probs=166.1

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHcc-CCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS-PRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEG  138 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~-~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~  138 (273)
                      |++...|+|+|||||||||+|+.|+++||++||++++++|++.. ..+..++.++.+..+|...++.....++..++...
T Consensus         5 ~~~~~iI~i~GppGSGKsT~a~~La~~~g~~~is~gdl~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (196)
T d1ukza_           5 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDN   84 (196)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEehhHHHHHHhhhcccHHHHHHHHhhhccccccchhHHHHHHHHHHhh
Confidence            45677899999999999999999999999999999999998764 56789999999999999999999988888877665


Q ss_pred             ccCCcceEEEeCCCCCHHHHHHHHhh-CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHH
Q 024067          139 YYRGESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKF  217 (273)
Q Consensus       139 ~~~~~~g~IlDg~P~~~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl  217 (273)
                      .+....+||+||||++..|+..+... ..++.+++|+++++++++|+..+....            .+.++..+.+++|+
T Consensus        85 ~~~~~~~~vl~g~p~~~~q~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~~~~~------------~r~~~~~e~~~~r~  152 (196)
T d1ukza_          85 VKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKTS------------GRSDDNIESIKKRF  152 (196)
T ss_dssp             HHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHH------------CCTTCSHHHHHHHH
T ss_pred             hccCCCceeeeccchhHHHHHHHHHhccccceeeccCCCHHHHHHHHHhccccc------------cccchHHHHHHHHH
Confidence            44456899999999999999988655 688999999999999999997765311            13467789999999


Q ss_pred             HHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067          218 RIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ  260 (273)
Q Consensus       218 ~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~  260 (273)
                      ..|.++..++.+||++.++++.||++++++|||++|++.|..+
T Consensus       153 ~~y~~~~~~l~~~y~~~~~~~~Id~~~s~eeV~~~I~~~i~~~  195 (196)
T d1ukza_         153 NTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAIRDS  195 (196)
T ss_dssp             HHHHHTTHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHhh
Confidence            9999999999999999899999999999999999999999765

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.2e-33  Score=232.41  Aligned_cols=172  Identities=27%  Similarity=0.478  Sum_probs=156.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~  143 (273)
                      |+|+|+|||||||||+|+.|+++||++||++++++++....+++.++.+.+++.+|..+|++++..++...+....  ..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~~~~~~i~~~~llr~~~~~~~~~~~~i~~~~~~g~~~~d~~v~~~~~~~~~~~~--~~   78 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQED--CR   78 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGG--GG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceechhhHhHHhhccCChHHHHHHHHHHcCCCCcchhHHHHHHHhhcccc--cc
Confidence            5899999999999999999999999999999999999988889999999999999999999999999988887653  35


Q ss_pred             ceEEEeCCCCCHHHHHHHHhh-CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHHH
Q 024067          144 SGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAE  222 (273)
Q Consensus       144 ~g~IlDg~P~~~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~  222 (273)
                      +|||+||||++..|+..+... ..|++||+|+||++++.+|+..|.                    +++.+++|+..|++
T Consensus        79 ~g~i~~g~pr~~~~~~~~~~~~~~~~~vi~L~~~~~~l~~R~~~~~--------------------~~e~i~~r~~~y~~  138 (179)
T d1e4va1          79 NGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVKDD--------------------QEETVRKRLVEYHQ  138 (179)
T ss_dssp             GCEEEESCCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTC--------------------SHHHHHHHHHHHHH
T ss_pred             cceeecccccchHHhhhhhhccCCceEEEEeccchhhhhhhhcccc--------------------cHHHHHHHHHHHHH
Confidence            899999999999999998765 579999999999999999997653                    46789999999999


Q ss_pred             hhHHHHHHHHhc-----CcEEEEeCCCChhHHHHHHHHHH
Q 024067          223 QGKSLEDYYSKQ-----RKLLNFQVAAAPGETWQGLLSAL  257 (273)
Q Consensus       223 ~~~~l~~~y~~~-----~~~~~id~~~s~~ev~~~I~~~l  257 (273)
                      ...++.+||.+.     .+++.||+++++++|+++|.++|
T Consensus       139 ~~~~v~~~y~~~~~~~~~~~~~IDa~~~ieeV~~~I~~~l  178 (179)
T d1e4va1         139 MTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL  178 (179)
T ss_dssp             HTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCcEEEEECCCCHHHHHHHHHHHh
Confidence            999999999763     35899999999999999999876

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=100.00  E-value=6.5e-33  Score=228.63  Aligned_cols=175  Identities=27%  Similarity=0.471  Sum_probs=158.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~  143 (273)
                      |+|+|+|||||||||+|+.||++||++||+++++++++....++.|..+++++.+|..+|+.....++..++....  ..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~g~~i~~~~~~g~~~~d~~~~~~~~~~~~~~~--~~   78 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEVTIGIVRERLSKSD--CD   78 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSST--TS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceeeHHHHHHHhhhcCCchHHHHHHHHHcCCcccCcchhHHHHHhhcccc--cc
Confidence            5799999999999999999999999999999999999988889999999999999999999999999999887653  46


Q ss_pred             ceEEEeCCCCCHHHHHHHHhh-----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHH
Q 024067          144 SGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFR  218 (273)
Q Consensus       144 ~g~IlDg~P~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~  218 (273)
                      .+||+||||++..|+..|...     ..+.++++++++.+.+.+|+..+                    ++++.+++|++
T Consensus        79 ~~~vl~g~p~~~~~~~~l~~~~~~~~~~i~~~~~l~~~~e~~~~R~~~~--------------------~~~e~i~~R~~  138 (182)
T d1s3ga1          79 NGFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEELIARLTAD--------------------DNPDTVTNRLE  138 (182)
T ss_dssp             SCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTT--------------------CSHHHHHHHHH
T ss_pred             cceeeeccccchhHHHHHHHHhhcCCCeeeeccchhhhhhhhhhhhhcc--------------------chhHHHHHHHH
Confidence            899999999999999988653     35688999999999999997543                    35678999999


Q ss_pred             HHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067          219 IYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ  260 (273)
Q Consensus       219 ~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~  260 (273)
                      .|++...|+.+||++.++++.||+++++++|+++|...|...
T Consensus       139 ~y~~~~~~i~~~y~~~~~~~~Id~~~~~eeV~~~I~~il~~~  180 (182)
T d1s3ga1         139 VNMNQTAPLLAFYDSKEVLVNINGQKDIKDVFKDLDVILQGN  180 (182)
T ss_dssp             HHHHHHHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999998754

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=6.6e-33  Score=228.24  Aligned_cols=175  Identities=30%  Similarity=0.504  Sum_probs=158.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~  143 (273)
                      |+|+|+|||||||||+|+.|+++||+.||+++++++++....++.+..+..++++|..+++++...++...+....+  .
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~~g~~~i~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~   78 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDA--A   78 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSGGG--T
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceEchHHHHHHHHhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHhhCccc--c
Confidence            58999999999999999999999999999999999999988899999999999999999999999999998876543  5


Q ss_pred             ceEEEeCCCCCHHHHHHHHhh-----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHH
Q 024067          144 SGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFR  218 (273)
Q Consensus       144 ~g~IlDg~P~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~  218 (273)
                      .+||+||||++..|+..|...     ..|+++|+|+++++++.+|+.+|..                .+++++.+++|+.
T Consensus        79 ~~~i~d~~p~~~~~~~~l~~~~~~~~~~~~~vi~l~~~~e~l~~R~~~r~r----------------~~~~~~~i~~rl~  142 (181)
T d2cdna1          79 NGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGR----------------ADDTDDVILNRMK  142 (181)
T ss_dssp             TCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCC----------------TTCSHHHHHHHHH
T ss_pred             ccEEecccccchhHHHHHHHHHHhcCCCccEEEeccCCHHHHHhhhccccc----------------ccchhHHHHHHHH
Confidence            799999999999999988653     4789999999999999999998763                2567789999999


Q ss_pred             HHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHH
Q 024067          219 IYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALH  258 (273)
Q Consensus       219 ~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~  258 (273)
                      .|++...++.+||++  .++.||++++++||+++|++.|.
T Consensus       143 ~y~~~~~~l~~~y~~--~~~~Id~~~s~eeV~~~I~~~l~  180 (181)
T d2cdna1         143 VYRDETAPLLEYYRD--QLKTVDAVGTMDEVFARALRALG  180 (181)
T ss_dssp             HHHHHTTTHHHHTTT--TEEEEECCSCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhc--CeEEEECCCCHHHHHHHHHHHhC
Confidence            999999999999975  58999999999999999998874

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=2.4e-31  Score=218.21  Aligned_cols=174  Identities=28%  Similarity=0.469  Sum_probs=158.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~  143 (273)
                      |+|+|+|||||||||+|+.||++||++||+++++++++....++.|..++.++.+|..+|++....++...+....+  .
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~~~~~~i~~~~ll~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~   78 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLSKDDC--Q   78 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGG--T
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceechhHHHHHhhccCChhhHHHHHHHHcCCeeccchHHHHHHHHhhchhh--h
Confidence            57999999999999999999999999999999999998888899999999999999999999999999888776543  5


Q ss_pred             ceEEEeCCCCCHHHHHHHHhh-----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHH
Q 024067          144 SGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFR  218 (273)
Q Consensus       144 ~g~IlDg~P~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~  218 (273)
                      .+|++||+|....|...++..     ..++++++|+++.+.+.+|+..+                    ++++.+++|++
T Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~R~~~~--------------------~~~e~~~~Rl~  138 (182)
T d1zina1          79 NGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERLTAD--------------------DNEATVANRLE  138 (182)
T ss_dssp             TCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTT--------------------CSHHHHHHHHH
T ss_pred             cCcccccccchhHHHHHHHHhhhccCCceeeeeccccccchhhhccccc--------------------cchHHHHHHHH
Confidence            899999999999998877543     36889999999999999999754                    34678999999


Q ss_pred             HHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067          219 IYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL  259 (273)
Q Consensus       219 ~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~  259 (273)
                      .|+++..++.+||++.++++.||+++++++|+++|...|..
T Consensus       139 ~y~~~~~~l~~~y~~~~~~~~Id~~~~~eeV~~~I~~~L~~  179 (182)
T d1zina1         139 VNMKQMKPLVDFYEQKGYLRNINGEQDMEKVFADIRELLGG  179 (182)
T ss_dssp             HHHHHHTHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999874

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.97  E-value=5.8e-31  Score=218.11  Aligned_cols=175  Identities=23%  Similarity=0.374  Sum_probs=154.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~  141 (273)
                      .|++|+|+|||||||||+|+.|+++||++||++++++++......+....+.+++..|...+.+.....+...+....+ 
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-   80 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDA-   80 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHH-
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHCCcEEehhHHHHHhhhcccHHHHHHHHHHhcCCcccceeehhhhhhHhhhccc-
Confidence            5789999999999999999999999999999999999998888888899999999999999999888777776665432 


Q ss_pred             CcceEEEeCCCCCHHHHHHHHhh-CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHH
Q 024067          142 GESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIY  220 (273)
Q Consensus       142 ~~~g~IlDg~P~~~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y  220 (273)
                      ..+|||+||||++..|+..|+.. ..|+.+|+|+++++++.+|+..+.                    +++.+++|+..|
T Consensus        81 ~~~~~vid~~~~~~~q~~~l~~~~~~p~~~i~L~~~~e~l~~R~~~~~--------------------~~e~~~~rl~~y  140 (189)
T d1zaka1          81 QENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVFDD--------------------TEEKVKLRLETY  140 (189)
T ss_dssp             HHTCEEEESCCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTTC--------------------CTTHHHHHHHHH
T ss_pred             ccCcEEeeccchhhHHHhhhhhcccccchheeechhhhhhhhhccccc--------------------hHHHHHHHHHHH
Confidence            35789999999999999999866 579999999999999999996654                    234788999999


Q ss_pred             HHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067          221 AEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL  259 (273)
Q Consensus       221 ~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~  259 (273)
                      +++..++.+||+  +.++.||+++++++|+++|.+.|..
T Consensus       141 ~~~~~~l~~~y~--~~~~~Id~~~~idev~~~I~~~l~~  177 (189)
T d1zaka1         141 YQNIESLLSTYE--NIIVKVQGDATVDAVFAKIDELLGS  177 (189)
T ss_dssp             HHHHHHHHHTTC--CCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC--CCEEEEECCCCHHHHHHHHHHHHHH
Confidence            999999999995  5789999999999999999988864

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=1.2e-17  Score=133.70  Aligned_cols=163  Identities=12%  Similarity=0.065  Sum_probs=105.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHH---HHHHHHHHHhc
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVI---FALLSKRLEEG  138 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~---~~ll~~~l~~~  138 (273)
                      .+.+|+|+|+|||||||+|+.|++++++++++++++.....          ......+.....+..   ...+...+...
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~~l~~~~~~~d~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRN----------IEKMASGEPLNDDDRKPWLQALNDAAFAM   74 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHH----------HHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCeechhhhhHHHH----------hhhhccCcceehhhhHHHHHHHHHHHHHH
Confidence            56788899999999999999999999999999987654321          111222222222211   11111111111


Q ss_pred             ccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHH
Q 024067          139 YYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFR  218 (273)
Q Consensus       139 ~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~  218 (273)
                       .....+++++...........+.....+..+|+|+||++++.+|+.+|..+                ....+.++.+++
T Consensus        75 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~Rl~~R~~~----------------~~~~~~~~~~~~  137 (171)
T d1knqa_          75 -QRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGH----------------FFKTQMLVTQFE  137 (171)
T ss_dssp             -HHHCSEEEEECCCCSHHHHHHHHTTCTTEEEEEEECCHHHHHHHHHTSTTC----------------CCCHHHHHHHHH
T ss_pred             -HhccCceEeeccchHHHHHHHHHHhCCCceEEeecCCHHHHHHHHHhCcCC----------------CccHHHHHhhHH
Confidence             012355555554445555666677777889999999999999999988632                123455565555


Q ss_pred             HHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHH
Q 024067          219 IYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALH  258 (273)
Q Consensus       219 ~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~  258 (273)
                      .|+..      ++ ....++.||++++++++.++|.+.|.
T Consensus       138 ~~e~~------~~-~e~~~~~id~~~~~e~v~~~i~~~lk  170 (171)
T d1knqa_         138 TLQEP------GA-DETDVLVVDIDQPLEGVVASTIEVIK  170 (171)
T ss_dssp             HCCCC------CT-TCTTEEEEECSSCHHHHHHHHHHHHH
T ss_pred             HhhCC------Cc-ccCCEEEEeCCCCHHHHHHHHHHHhc
Confidence            44321      12 22347889999999999999999885

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=99.74  E-value=1.8e-17  Score=133.91  Aligned_cols=164  Identities=10%  Similarity=0.098  Sum_probs=99.2

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCcc
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGES  144 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~~  144 (273)
                      .|+|+|+|||||||+|+.||+++|++++++|+++++..      |+.+.+++....   .+.......+.+...  ....
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~Lg~~~id~D~~ie~~~------g~~i~ei~~~~g---~~~~~~~~~~~l~~~--~~~~   72 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTS------GMTVADVVAAEG---WPGFRRRESEALQAV--ATPN   72 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH------CSCHHHHHHHHH---HHHHHHHHHHHHHHH--CCSS
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCEEehhhhhhhhh------hhhhhhhhcccc---hHHHHHHHHHHHHhh--cccc
Confidence            47789999999999999999999999999999987542      222333332210   122233333334332  1233


Q ss_pred             eEEEe--CCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHHH
Q 024067          145 GFILD--GIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAE  222 (273)
Q Consensus       145 g~IlD--g~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~  222 (273)
                      .++..  |.+......+.|..   ...+|+|+++.+++.+|+..+....            .+.........+.+..+.+
T Consensus        73 ~~~~~~~~~~~~~~~~~~l~~---~~~~v~L~~~~e~l~~Rl~~~~~~~------------~r~~~~~~~~~~~~~~~~~  137 (170)
T d1e6ca_          73 RVVATGGGMVLLEQNRQFMRA---HGTVVYLFAPAEELALRLQASLQAH------------QRPTLTGRPIAEEMEAVLR  137 (170)
T ss_dssp             EEEECCTTGGGSHHHHHHHHH---HSEEEEEECCHHHHHHHHHHHHCSC------------CCCCTTHHHHHHHHHHHHH
T ss_pred             ceecccccchhhhHHHHhhhc---cceeEEEecCchhHHHHHhhccccc------------cCCCCCCCCHHHHHHHHHH
Confidence            44444  34444444444443   2369999999999999997654321            0112222233344433333


Q ss_pred             hhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHH
Q 024067          223 QGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALH  258 (273)
Q Consensus       223 ~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~  258 (273)
                      ...   .+|++... +.||++++++++..+|.+.|.
T Consensus       138 er~---~lY~~~a~-~~Id~~~~~~eiv~~Ii~~Lr  169 (170)
T d1e6ca_         138 ERE---ALYQDVAH-YVVDATQPPAAIVCELMQTMR  169 (170)
T ss_dssp             HHH---HHHHHHCS-EEEETTSCHHHHHHHHHHHTT
T ss_pred             HHH---HHHHHcCC-EEEcCCCCHHHHHHHHHHHcC
Confidence            323   34655443 468999999999999988763

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=99.71  E-value=1e-16  Score=128.44  Aligned_cols=163  Identities=14%  Similarity=0.123  Sum_probs=98.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC-CCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcc
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY  139 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g-~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~  139 (273)
                      +++++|+|+|+|||||||+|+.|+++|+ +.+++.+++...........       ...+.....+.....+.+.+....
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~i   75 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYD-------TELDTHIIEEKDEDRLLDFMEPIM   75 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTCSCC-------------CCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcEEeHHHHHHHHhhhhhHH-------HhhcccchHHHHHHHHHHHHHhhh
Confidence            4789999999999999999999999996 57777777666543322221       112233333433333334343321


Q ss_pred             cCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHH--H
Q 024067          140 YRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEK--F  217 (273)
Q Consensus       140 ~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~r--l  217 (273)
                       ....++++|++++...+      ...++.+|+|+|+++++.+|+..|....                   ....+.  .
T Consensus        76 -~~~~~~~~~~~~~~~~~------~~~~~~vI~L~~~~e~l~~Rl~~R~~~~-------------------~~~~~~~~~  129 (174)
T d1y63a_          76 -VSRGNHVVDYHSSELFP------ERWFHMVVVLHTSTEVLFERLTKRQYSE-------------------AKRAENMEA  129 (174)
T ss_dssp             -TSSSEEEEECSCCTTSC------GGGCSEEEEEECCHHHHHHHHHHTTCCH-------------------HHHHHHHHH
T ss_pred             -hhcccccccHHHHHHHH------HhcCceEEEEECCHHHHHHHHHhCCCcc-------------------cccccchhh
Confidence             23578899988765332      1346789999999999999999886421                   011111  1


Q ss_pred             HHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHH
Q 024067          218 RIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALH  258 (273)
Q Consensus       218 ~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~  258 (273)
                      +.+........+.|.. ..++..+ +.+++++.+.|.+.+.
T Consensus       130 e~~~~~~~~~~~~~~~-~~~i~~~-~~t~ee~~~~V~~I~~  168 (174)
T d1y63a_         130 EIQCICEEEARDAYED-DIVLVRE-NDTLEQMAATVEEIRE  168 (174)
T ss_dssp             HHTTHHHHHHHHHSCG-GGEEEEE-CSSHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHhhcC-CEEEECC-CCCHHHHHHHHHHHHH
Confidence            1122222334445543 3344333 6889998887766654

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=6.2e-16  Score=129.27  Aligned_cols=166  Identities=12%  Similarity=0.082  Sum_probs=105.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh---CCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHH----------
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIF----------  128 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~---g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~----------  128 (273)
                      ||+.|+|.|++||||||+++.|++.+   |..++.+.     +....++.++.++.++.....+......          
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~-----~p~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~r~~~   76 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR-----FPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQ   76 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE-----SSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTT
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEe-----CCCCCcccchhhhhhhhcccccchhhhhhHHHHHHHHH
Confidence            68899999999999999999999987   55554332     2334567888888887766555544332          


Q ss_pred             -HHHHHHHHhcccCCcceEEEeCCCCCH------------HHHHHHHh-hCCCceEEEEccCHHHHHHHHhcCCcCCCcc
Q 024067          129 -ALLSKRLEEGYYRGESGFILDGIPRTR------------IQAEILDQ-IVDVDLVINFKSIEDQLVKRNLESEAFSPHK  194 (273)
Q Consensus       129 -~ll~~~l~~~~~~~~~g~IlDg~P~~~------------~qa~~l~~-~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~  194 (273)
                       ..+...+..     +..+|+|.|+.+.            .....+.. ...||++|+|++|++++.+|...++..    
T Consensus        77 ~~~i~~~l~~-----g~~VI~DRy~~s~~ay~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~~~~----  147 (209)
T d1nn5a_          77 VPLIKEKLSQ-----GVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHER----  147 (209)
T ss_dssp             HHHHHHHHHT-----TCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC-----CT----
T ss_pred             HHhHHHHhhc-----ccceeecchhhhhhhhhhhccCccHHHHHHHhccCCCCceeeeecccHHHHhhhhcccccc----
Confidence             222333332     4668999874321            11111111 136999999999999999997654421    


Q ss_pred             cccccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhc-CcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067          195 EFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQ-RKLLNFQVAAAPGETWQGLLSALHLQ  260 (273)
Q Consensus       195 ~~y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~-~~~~~id~~~s~~ev~~~I~~~l~~~  260 (273)
                                  .++.+.+++..+.|.+.       +++. ++++.||+++++++|.++|...+...
T Consensus       148 ------------~E~~~~~~r~~~~Y~~l-------~~~~~~~~~~IDa~~~~e~V~~~I~~~v~~~  195 (209)
T d1nn5a_         148 ------------YENGAFQERALRCFHQL-------MKDTTLNWKMVDASKSIEAVHEDIRVLSEDA  195 (209)
T ss_dssp             ------------TCSHHHHHHHHHHHHHH-------TTCTTSCEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             ------------cccHHHHHHHHHHHHHH-------HHhCCCCEEEEECCCCHHHHHHHHHHHHHHH
Confidence                        12233333333445432       2222 36899999999999999988887755

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.69  E-value=5e-17  Score=130.36  Aligned_cols=158  Identities=13%  Similarity=0.095  Sum_probs=89.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCcc
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGES  144 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~~  144 (273)
                      .|+|+|+|||||||+++.||+++|++++++|+++++...      ..+..++..............+...+..     ..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l~~~~~d~d~~ie~~~g------~~i~~~~~~~g~~~~r~~e~~v~~~l~~-----~~   70 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN------QKVSEIFEQKRENFFREQEQKMADFFSS-----CE   70 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHT------SCHHHHHHHHCHHHHHHHHHHHHHHHTT-----CC
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCCEEecCchhhhHHh------hhhhhHHHhhhhccchhhhhhhchhhhh-----cc
Confidence            588999999999999999999999999999999876432      2222233221111111112223333332     23


Q ss_pred             eEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHhh
Q 024067          145 GFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQG  224 (273)
Q Consensus       145 g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~~~  224 (273)
                      .+|+..-. .....   ..+...+.+|+|++|.+++.+|+..+....          .|...+  ...+++-   |.   
T Consensus        71 ~~v~~~~g-~~~~~---~~l~~~~~vI~L~~s~~~l~~Rl~~~~~~~----------Rp~~~~--~~~~~~l---~~---  128 (161)
T d1viaa_          71 KACIATGG-GFVNV---SNLEKAGFCIYLKADFEYLKKRLDKDEISK----------RPLFYD--EIKAKKL---YN---  128 (161)
T ss_dssp             SEEEECCT-TGGGS---TTGGGGCEEEEEECCHHHHTTCCCGGGTTT----------SCTTCC--HHHHHHH---HH---
T ss_pred             cccccccc-chhhH---HHHHhCCeEEEeccchHHHHHHHccccccc----------cccccC--chHHHHH---HH---
Confidence            34443211 11111   122345689999999999999987665321          111111  1222221   11   


Q ss_pred             HHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHHH
Q 024067          225 KSLEDYYSKQRKLLNFQVA-AAPGETWQGLLSAL  257 (273)
Q Consensus       225 ~~l~~~y~~~~~~~~id~~-~s~~ev~~~I~~~l  257 (273)
                       .....|++... +.||++ .+++++.++|.+.|
T Consensus       129 -~r~~~Y~~~ad-~~Idt~~~s~eei~~~I~~~i  160 (161)
T d1viaa_         129 -ERLSKYEQKAN-FILNIENKNIDELLSEIKKVI  160 (161)
T ss_dssp             -HHHHHHHHHCS-EEEECTTCCHHHHHHHHHHHH
T ss_pred             -HHHHHHHhhCC-EEEECCCCCHHHHHHHHHHHh
Confidence             11223433222 346765 69999999999886

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=99.68  E-value=6.7e-17  Score=130.96  Aligned_cols=174  Identities=10%  Similarity=0.084  Sum_probs=104.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCC-----CeechhHHHHHHccCCChHHHHHHHHHHCCCCCCH-------HHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEV-----PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPE-------DVIFAL  130 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~-----~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~-------~~~~~l  130 (273)
                      |++|+|+|+|||||||+++.|++.|+.     ++++.++..+............     ......+.       ......
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~   75 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDR-----DEMRKLSVEKQKKLQIDAAKG   75 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSH-----HHHTTSCHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCcchHHHHHHHhhhhh-----hhccccchhhcccCHHHHHHH
Confidence            467889999999999999999999854     3556677665443221110000     00000111       111122


Q ss_pred             HHHHHHhcccCCcceEEEeCCCCCHHHH-------HHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCC
Q 024067          131 LSKRLEEGYYRGESGFILDGIPRTRIQA-------EILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGAR  203 (273)
Q Consensus       131 l~~~l~~~~~~~~~g~IlDg~P~~~~qa-------~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~  203 (273)
                      +...+..   ....++++|+++....+.       ..+.....|+++|+|+++++++.+|+..|....            
T Consensus        76 ~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~r~~~~------------  140 (194)
T d1nksa_          76 IAEEARA---GGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFLLEADPKIILSRQKRDTTRN------------  140 (194)
T ss_dssp             HHHHHHH---TCSSEEEEEECSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHHCTTTC------------
T ss_pred             HHHHHHH---hCCCcEEEEccCchHHHHHHHHhHHHHHHhhhccccceEEecCHHHHHHHHHHhhhcc------------
Confidence            2222222   245778888766532221       112223478999999999999999998876432            


Q ss_pred             CCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHH
Q 024067          204 FSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL  257 (273)
Q Consensus       204 ~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l  257 (273)
                       +.+...+.+.+++..+..........+.....++..+++++++|++++|...|
T Consensus       141 -r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~ee~~~~Ii~~i  193 (194)
T d1nksa_         141 -RNDYSDESVILETINFARYAATASAVLAGSTVKVIVNVEGDPSIAANEIIRSM  193 (194)
T ss_dssp             -CCCCCSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred             -cccchHHHHHHHHHHHHHhHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHh
Confidence             23444556666666665554444444444444455566789999999999876

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=4.3e-16  Score=129.71  Aligned_cols=169  Identities=11%  Similarity=0.117  Sum_probs=104.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh---CCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCC-----HH--------
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP-----ED--------  125 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~---g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~-----~~--------  125 (273)
                      ||+.|+|.|++||||||+++.|++.+   |+.++-.   .  ..+.+++.|+.+++.+..+....     ..        
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~---~--~ep~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~   75 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVF---T--REPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYA   75 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEE---E--ESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEE---e--cCCCCccchhhhHHHHhccccccccccchHHHHHHHHH
Confidence            57899999999999999999999987   4433211   1  12345678888888776543221     11        


Q ss_pred             ----HHHHHHHHHHHhcccCCcceEEEeCCCCC------------HHHHHHHHh----hCCCceEEEEccCHHHHHHHHh
Q 024067          126 ----VIFALLSKRLEEGYYRGESGFILDGIPRT------------RIQAEILDQ----IVDVDLVINFKSIEDQLVKRNL  185 (273)
Q Consensus       126 ----~~~~ll~~~l~~~~~~~~~g~IlDg~P~~------------~~qa~~l~~----~~~~d~vI~L~~~~e~l~~Rl~  185 (273)
                          .....+...+..     +..+|.|.|..+            ......+..    ...||++|+|+++++++.+|+.
T Consensus        76 ~~~~~~~~~i~~~l~~-----~~~vi~DRy~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pdl~i~Ld~~~e~~~~Ri~  150 (210)
T d4tmka_          76 ARVQLVETVIKPALAN-----GTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRAR  150 (210)
T ss_dssp             HHHHHHHHTHHHHHHT-----TCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc-----CCcccccchhhhhhhhhccccccchhHHHHHHHHhhcCCCCceEEEecchHHHHHHHhh
Confidence                111122233332     355677865321            111111211    2479999999999999999998


Q ss_pred             cCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067          186 ESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL  259 (273)
Q Consensus       186 ~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~  259 (273)
                      .|.....            -.....+.+++....|.+       ++.+...++.||+++++++|.++|...+..
T Consensus       151 ~R~~~~~------------~~~~~~~~~~~v~~~y~~-------~~~~~~~~~~IDa~~~~e~v~~~I~~~i~~  205 (210)
T d4tmka_         151 ARGELDR------------IEQESFDFFNRTRARYLE-------LAAQDKSIHTIDATQPLEAVMDAIRTTVTH  205 (210)
T ss_dssp             HHSSCCT------------TTTSCHHHHHHHHHHHHH-------HHHTCTTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             hccccch------------hhhccHHHHHHHHHHHHH-------HHhcCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence            8864210            011233333333344432       234445689999999999999999988865

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.67  E-value=1.9e-16  Score=127.07  Aligned_cols=161  Identities=17%  Similarity=0.221  Sum_probs=93.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhcccCC
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYRG  142 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~-~g~~~~~~~~~~ll~~~l~~~~~~~  142 (273)
                      ++|+|+|+|||||||+++.||+++|++++++|+++.+...      ..+.+++. .|.....+.....+...+..     
T Consensus         2 p~IvliG~~G~GKSTig~~La~~l~~~fiD~D~~ie~~~g------~~i~~~~~~~g~~~~r~~e~~~~~~~~~~-----   70 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTG------RSIADIFATDGEQEFRRIEEDVVRAALAD-----   70 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHS------SCHHHHHHHHCHHHHHHHHHHHHHHHHHH-----
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhCCCeEeeccchhhhhh------hhhhhhhhhhhHHHHHHHHhhhhhhcccc-----
Confidence            3578889999999999999999999999999998876431      22222222 12222233334444444443     


Q ss_pred             cceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHHH
Q 024067          143 ESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAE  222 (273)
Q Consensus       143 ~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~  222 (273)
                      ...++..|.+......  .........+|+|.++.+++.+|+..+...+.           ....+..+.+++.+..   
T Consensus        71 ~~~vi~~gg~~~~~~~--~~~~l~~~~~I~L~~~~~~~~~R~~~~~~Rpl-----------l~~~~~~e~~~~l~~e---  134 (165)
T d2iyva1          71 HDGVLSLGGGAVTSPG--VRAALAGHTVVYLEISAAEGVRRTGGNTVRPL-----------LAGPDRAEKYRALMAK---  134 (165)
T ss_dssp             CCSEEECCTTGGGSHH--HHHHHTTSCEEEEECCHHHHHHHTTCCCCCSS-----------TTSCCHHHHHHHHHHH---
T ss_pred             cccccccccccccccc--ccccccccceeeeeccchhhhhcccccccchh-----------ccCccHHHHHHHHHHH---
Confidence            2455555543222211  11122345689999999999999976543210           0111222333332221   


Q ss_pred             hhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHH
Q 024067          223 QGKSLEDYYSKQRKLLNFQVA-AAPGETWQGLLSA  256 (273)
Q Consensus       223 ~~~~l~~~y~~~~~~~~id~~-~s~~ev~~~I~~~  256 (273)
                          ....|++... +.||++ .+++|+.++|.+.
T Consensus       135 ----R~~~Y~~~ad-~~Idt~~~s~~ei~~~Ii~~  164 (165)
T d2iyva1         135 ----RAPLYRRVAT-MRVDTNRRNPGAVVRHILSR  164 (165)
T ss_dssp             ----HHHHHHHHCS-EEEECSSSCHHHHHHHHHTT
T ss_pred             ----HHHHHHhhCC-EEEECCCCCHHHHHHHHHhc
Confidence                1234554322 567865 4999999998764

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=99.65  E-value=9.7e-16  Score=122.18  Aligned_cols=109  Identities=20%  Similarity=0.189  Sum_probs=73.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG  142 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~  142 (273)
                      .++|+|+|+|||||||+|+.|+++||+++++++++++..........      .........+.....+.....      
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~l~~~~i~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~------   71 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDE------EYDCPILDEDRVVDELDNQMR------   71 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHTTCBCCCCS------SSSCCCBCHHHHHHHHHHHHH------
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCcEEechHHHHHhccccchhH------HhhhhhHHHHHHHHHhhhhhh------
Confidence            46788999999999999999999999999999999986433211100      011222333444444433332      


Q ss_pred             cceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCc
Q 024067          143 ESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA  189 (273)
Q Consensus       143 ~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~  189 (273)
                      ..++.++++......      ....+.+|+|+|+++++.+|+..|..
T Consensus        72 ~~~~~~~~~~~~~~~------~~~~~~~i~l~~~~~~~~~Rl~~r~~  112 (173)
T d1rkba_          72 EGGVIVDYHGCDFFP------ERWFHIVFVLRTDTNVLYERLETRGY  112 (173)
T ss_dssp             HCCEEEECSCCTTSC------GGGCSEEEEEECCHHHHHHHHHHTTC
T ss_pred             cCCcccchhHHHHHH------HhcCCCcceecCCHHHHHHHHHhcCC
Confidence            245666666543221      12456899999999999999998874

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=99.63  E-value=9.2e-16  Score=123.51  Aligned_cols=176  Identities=14%  Similarity=0.125  Sum_probs=98.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCC-----CeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEV-----PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEG  138 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~-----~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~  138 (273)
                      +.|+|.|+|||||||+++.|+++|+.     ..++.++..+..........  ..+.+..............+...+...
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVS--DRDQMRKMDPETQKRIQKMAGRKIAEM   79 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCS--SGGGGSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHHhhh--hhhhhhhhhchhhHHHHHHHHHHHHHH
Confidence            57999999999999999999999854     45556776665432110000  000000000000111122222233221


Q ss_pred             ccCCcceEEEeCCCCCHHHH-------HHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHH
Q 024067          139 YYRGESGFILDGIPRTRIQA-------EILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAAS  211 (273)
Q Consensus       139 ~~~~~~g~IlDg~P~~~~qa-------~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e  211 (273)
                        .....+++|+++.+..+.       ..+.....|+.+|+|+++++++.+|+.+|....             +..+..+
T Consensus        80 --~~~~~vl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~~~~~~-------------~~~~~~~  144 (190)
T d1khta_          80 --AKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTGDEILMRRMSDETRV-------------RDLDTAS  144 (190)
T ss_dssp             --HTTSCEEEECCSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHTSSSCS-------------SSCCCHH
T ss_pred             --hCCCeEEECCcccchHHHHHHHhhhhhhhhhccccceeeecCCHHHHHHHHHHhcccc-------------CCcccHH
Confidence              235778999987653221       122233578999999999999999998775321             1123333


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHH
Q 024067          212 AWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL  257 (273)
Q Consensus       212 ~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l  257 (273)
                      .++ +...+..........|.....++.+++++++++++++|.+.|
T Consensus       145 ~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ee~~~ei~~~l  189 (190)
T d1khta_         145 TIE-QHQFMNRCAAMSYGVLTGATVKIVQNRNGLLDQAVEELTNVL  189 (190)
T ss_dssp             HHH-HHHHHHHHHHHHHHHHHCCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHHHHHHhhCCCeEEEECCCCCHHHHHHHHHHHh
Confidence            333 333333332222223333333455677889999999999886

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.63  E-value=3.2e-15  Score=124.70  Aligned_cols=39  Identities=18%  Similarity=0.236  Sum_probs=36.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE  101 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~  101 (273)
                      .++|.|.|||||||||+|+.||++||++|||+|+++|..
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~~lg~~~istGdl~R~~   41 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAA   41 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHHH
Confidence            467889999999999999999999999999999999963

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=99.60  E-value=5.3e-15  Score=117.48  Aligned_cols=162  Identities=12%  Similarity=0.078  Sum_probs=96.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~  143 (273)
                      +.|+|+|||||||||+|+.|+++++..++..+|.++.................    ......+...+...+.     ..
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-----~~   73 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELL----ALTWKNITDLTVNFLL-----AQ   73 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTCCCGGGCHHHH----HHHHHHHHHHHHHHHH-----TT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCEEEehHHHHHHHhccccchhHHHHHH----HHHHHHHHHHHHHHHh-----cC
Confidence            57889999999999999999999998877666777755443211110000000    0011222333333333     35


Q ss_pred             ceEEEeCCCCCHHHHHHHHhh-----CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHH
Q 024067          144 SGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFR  218 (273)
Q Consensus       144 ~g~IlDg~P~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~  218 (273)
                      .++|+|++.....+...++..     ..+..+++|.++.+++.+|+..|..+..                   ...+.+.
T Consensus        74 ~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~-------------------~~~~~~~  134 (176)
T d2bdta1          74 NDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDEQ-------------------MGERCLE  134 (176)
T ss_dssp             CEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-----------------------CGGGGH
T ss_pred             CCcccccccccHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHhCCCchh-------------------hhHHHHH
Confidence            789999987776655444322     2345689999999999999999864320                   0011112


Q ss_pred             HHHHhhHHHHHHHHh-cCcEEEEeCC-CChhHHHHHHHHHHHhc
Q 024067          219 IYAEQGKSLEDYYSK-QRKLLNFQVA-AAPGETWQGLLSALHLQ  260 (273)
Q Consensus       219 ~y~~~~~~l~~~y~~-~~~~~~id~~-~s~~ev~~~I~~~l~~~  260 (273)
                      .|.+       ++.. ....+.||++ .+++++.+.|...+..+
T Consensus       135 ~~~~-------~~~~~~~~~~~id~~~~~~~~~~~~I~~i~~~~  171 (176)
T d2bdta1         135 LVEE-------FESKGIDERYFYNTSHLQPTNLNDIVKNLKTNP  171 (176)
T ss_dssp             HHHH-------HHHTTCCTTSEEECSSSCGGGHHHHHHHHHHCG
T ss_pred             HHHH-------HHhCCCCCeEEEECCCCCHHHHHHHHHHHHhcC
Confidence            2211       1111 1122345655 58999999999998765

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.56  E-value=2.1e-14  Score=112.42  Aligned_cols=134  Identities=15%  Similarity=0.083  Sum_probs=87.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh-CCCeechhHHHHHHccCCChHH----HHHHHHHHCCCCCCHHHHHHHHHHHHHhc
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQELSPRSALY----KQIANAVNEGKLVPEDVIFALLSKRLEEG  138 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~-g~~~is~~dllr~~~~~~~~~g----~~i~~~l~~g~~~~~~~~~~ll~~~l~~~  138 (273)
                      ..|+|+|+|||||||+|+.|.+++ ++.+++.+++.+..........    .....       ........++...+..+
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~   75 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEG-------IVTGMQFDTAKSILYGG   75 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCGGGCCCCHHHHH-------HHHHHHHHHHHHHHTSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCCCCEEechHHHHHHHhcccchhhhhhhhhhhH-------HHHHHHHHHHHHHHHhh
Confidence            467899999999999999987654 7999999888765543221110    00000       00123344444555443


Q ss_pred             ccCCcceEEEeCCCCCHHHHHHHHh----hCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHH
Q 024067          139 YYRGESGFILDGIPRTRIQAEILDQ----IVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWK  214 (273)
Q Consensus       139 ~~~~~~g~IlDg~P~~~~qa~~l~~----~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~  214 (273)
                        .....+|+|+..........+..    ......+|+|++|.+++.+|...|..+.                ...+.++
T Consensus        76 --~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~----------------~~~~~i~  137 (152)
T d1ly1a_          76 --DSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKA----------------VPIDVLR  137 (152)
T ss_dssp             --SSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGGGC----------------CCHHHHH
T ss_pred             --ccCCCcccccccCCHHHHHHHHHhhhhhccchhhhhcCCCHHHHHHHHHccCCCC----------------CCHHHHH
Confidence              23467899998877666554433    3456689999999999999999886432                2355677


Q ss_pred             HHHHHHHH
Q 024067          215 EKFRIYAE  222 (273)
Q Consensus       215 ~rl~~y~~  222 (273)
                      ++++.|++
T Consensus       138 ~~~~~~~~  145 (152)
T d1ly1a_         138 SMYKSMRE  145 (152)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            76666654

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.54  E-value=2.9e-13  Score=113.07  Aligned_cols=176  Identities=10%  Similarity=0.041  Sum_probs=98.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCC-CCHHHHHHHH-H------
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL-VPEDVIFALL-S------  132 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~-~~~~~~~~ll-~------  132 (273)
                      ++|+.|+|.|+.||||||+++.|++.+.-...-+     .....++++|+.+++++.+... .++....-+. .      
T Consensus         1 ~kGk~I~iEG~DGsGKST~~~~L~~~L~~~~~~~-----~~p~~~~~~g~~ir~~l~~~~~~~~~~~~~llf~a~r~~~~   75 (214)
T d1tmka_           1 GRGKLILIEGLDRTGKTTQCNILYKKLQPNCKLL-----KFPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIV   75 (214)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHTTTSEEEE-----ESSCTTSHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTTH
T ss_pred             CCeEEEEEECCCCCcHHHHHHHHHHHHHhCCEEE-----EECCCCchHhHhHHHhhhhccccccchHHHHHHHHHHHHHH
Confidence            3789999999999999999999999986543321     1234567888999998865432 3333221111 0      


Q ss_pred             HHHHhcccCCcceEEEeCCCCCH--------------HHHHHHHh-hCCCceEEEEccCHHHHHHHHhcCCcCCCccccc
Q 024067          133 KRLEEGYYRGESGFILDGIPRTR--------------IQAEILDQ-IVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFL  197 (273)
Q Consensus       133 ~~l~~~~~~~~~g~IlDg~P~~~--------------~qa~~l~~-~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y  197 (273)
                      ..+... ...+..+|.|.|.-+.              .+...+.. ...||++|+|+++++....|..++..+.      
T Consensus        76 ~~i~~~-l~~g~~VI~DRy~~S~~ayq~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~~~~~~r~~~~~~~~------  148 (214)
T d1tmka_          76 DKIKKD-LLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDER------  148 (214)
T ss_dssp             HHHHHH-HHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECC----------CCSST------
T ss_pred             HHHHHH-HhcCCeeEecCccccchHhhhhcccchHHHHHHHHHHhcCCCcceehhccccHHHHHHHhcccchhh------
Confidence            111111 1124678889764321              11111111 2479999999999988888866554321      


Q ss_pred             ccCCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHh-cCcEEEEeCC-CChhHHHHHHHHHHHhc
Q 024067          198 RLGGARFSAADAASAWKEKFRIYAEQGKSLEDYYSK-QRKLLNFQVA-AAPGETWQGLLSALHLQ  260 (273)
Q Consensus       198 ~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~-~~~~~~id~~-~s~~ev~~~I~~~l~~~  260 (273)
                               -++.+.+++-.+.|.+..+   .+... ...++.||++ .++++|.++|...+...
T Consensus       149 ---------~e~~~~~~~v~~~Y~~l~~---~~~~~~~~~~~iID~s~~~~eev~~~I~~~v~~~  201 (214)
T d1tmka_         149 ---------YETVKFQEKVKQTFMKLLD---KEIRKGDESITIVDVTNKGIQEVEALIWQIVEPV  201 (214)
T ss_dssp             ---------TCCHHHHHHHHHHHHHHHH---HHHHTTCTTEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred             ---------hhhHHHHHHHHHHHHHHHH---HhhhhCCCcEEEEECCCCCHHHHHHHHHHHHHHH
Confidence                     1223333333345654432   22222 2468899975 68999988888877644

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=8.2e-15  Score=121.71  Aligned_cols=40  Identities=15%  Similarity=0.196  Sum_probs=36.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHc
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL  102 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~  102 (273)
                      .++|+|.|||||||||+|+.|+++||++|||+|+|+|...
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~~gl~~iStGdLlR~~a   42 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLA   42 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHHHH
Confidence            4588999999999999999999999999999999999643

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.51  E-value=1.6e-14  Score=115.33  Aligned_cols=161  Identities=16%  Similarity=0.166  Sum_probs=94.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeech-hHHHHHHccCCCh------HHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM-GSLVRQELSPRSA------LYKQIANAVNEGKLVPEDVIFALLSKR  134 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~-~dllr~~~~~~~~------~g~~i~~~l~~g~~~~~~~~~~ll~~~  134 (273)
                      .|..|+|+|+|||||||+|+.|++++|++++++ +|.++..+.....      ..+.....        .......+...
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~   74 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMI--------MQIAADVAGRY   74 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHH--------HHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHHHHHHhcCCcccccchhhhHHHHH--------HHHHHHHHHHH
Confidence            467899999999999999999999999887654 3455544432110      00000000        01111222222


Q ss_pred             HHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHH
Q 024067          135 LEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWK  214 (273)
Q Consensus       135 l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~  214 (273)
                      +.     ....+|+|+.+.... ...+.....+..+|+|+|+++++.+|+..|....               ....+.+.
T Consensus        75 ~~-----~~~~vi~~~~~~~~~-~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~---------------~~~~~~~~  133 (176)
T d1zp6a1          75 AK-----EGYFVILDGVVRPDW-LPAFTALARPLHYIVLRTTAAEAIERCLDRGGDS---------------LSDPLVVA  133 (176)
T ss_dssp             HH-----TSCEEEECSCCCTTT-THHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTS---------------CCCHHHHH
T ss_pred             Hh-----cCCCeEecccccHHH-HHHHHhcccccccccCCCCHHHHHHHHHhCCCcc---------------ccchhhHH
Confidence            22     357789998876443 3334444566788999999999999999886422               11233332


Q ss_pred             HHHHHHHHhhHHHHHHHHhcCcEEEEeC-CCChhHHHHHHHHHHHhc
Q 024067          215 EKFRIYAEQGKSLEDYYSKQRKLLNFQV-AAAPGETWQGLLSALHLQ  260 (273)
Q Consensus       215 ~rl~~y~~~~~~l~~~y~~~~~~~~id~-~~s~~ev~~~I~~~l~~~  260 (273)
                      ...+.+..       ++....  +.||+ +.+++++.+.|.+.|...
T Consensus       134 ~~~~~~~~-------~~~~~~--~~idt~~~~~ee~~~~I~~~l~~~  171 (176)
T d1zp6a1         134 DLHSQFAD-------LGAFEH--HVLPVSGKDTDQALQSAINALQSG  171 (176)
T ss_dssp             HHHHHTTC-------CGGGGG--GEEECTTCCTTTTTTTTHHHHHHT
T ss_pred             HHHHHHhh-------cccccC--EEEECCCCCHHHHHHHHHHHHHcC
Confidence            22222211       111111  23554 458999999999998765

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=1.5e-13  Score=107.60  Aligned_cols=164  Identities=9%  Similarity=0.077  Sum_probs=83.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCc
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~  143 (273)
                      +.|+|+|||||||||+|+.||+++|+++++.+++.............   ...       .+.....+............
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L~~~~id~~~~~~~~~~~~~~~~~---~~~-------~~~~~~~~~~~~~~~~~~~~   72 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVF---DLE-------GEEGFRDREEKVINELTEKQ   72 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHTSCHHHHH---HHH-------HHHHHHHHHHHHHHHHHTSS
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCeEeechhHHhhhcccccchh---hhh-------hhhHHHHHHHHHHHhhcccc
Confidence            35889999999999999999999999999998877654332211111   100       11111111111111101123


Q ss_pred             ceEEEeCCCC--CHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHH
Q 024067          144 SGFILDGIPR--TRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYA  221 (273)
Q Consensus       144 ~g~IlDg~P~--~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~  221 (273)
                      ..++......  .......+   ......+++.++...+..|+..+....          ...........+.+.+..+ 
T Consensus        73 ~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~r~~~~~~~~----------~~~~~~~~~~~~~~~~~~~-  138 (169)
T d1kaga_          73 GIVLATGGGSVKSRETRNRL---SARGVVVYLETTIEKQLARTQRDKKRP----------LLHVETPPREVLEALANER-  138 (169)
T ss_dssp             SEEEECCTTGGGSHHHHHHH---HHHSEEEECCCCHHHHHSCC------C----------CSSSSCCCHHHHHHHHHHH-
T ss_pred             ceEeeccchhhhhhhhhHHh---hhcceeeeccCcHHHhhhHhhhccccc----------hhcccccchhHHHHHHHHh-
Confidence            3444443332  22222222   234578999999999998887654321          0001122233333333322 


Q ss_pred             HhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHHHH
Q 024067          222 EQGKSLEDYYSKQRKLLNFQVA-AAPGETWQGLLSALH  258 (273)
Q Consensus       222 ~~~~~l~~~y~~~~~~~~id~~-~s~~ev~~~I~~~l~  258 (273)
                            ...|.+... ++||++ .+++|+.++|.+.|.
T Consensus       139 ------~~~y~~~~d-~~Idt~~~s~ee~v~~Ii~~le  169 (169)
T d1kaga_         139 ------NPLYEEIAD-VTIRTDDQSAKVVANQIIHMLE  169 (169)
T ss_dssp             ------HHHHHHHCS-EEC-----CHHHHHHHHHHHHC
T ss_pred             ------hhhhhccCC-EEEECCCCCHHHHHHHHHHHhC
Confidence                  233444322 457775 489999999998873

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.50  E-value=4.8e-13  Score=110.79  Aligned_cols=165  Identities=12%  Similarity=0.105  Sum_probs=99.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCH-------------------
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPE-------------------  124 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~-------------------  124 (273)
                      ..|.|+|++||||||+|+.|. ++|++++|+|++.++.+.++++....+.+.+......++                   
T Consensus         3 ~iIgITG~igSGKStv~~~l~-~~G~~vidaD~i~~~l~~~~~~~~~~i~~~~~~~~~~~d~~i~r~~l~~~vf~~~~~~   81 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT-DLGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDK   81 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH-TTTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH-HCCCeEEEchHHHHHHHhccchhHHHHHHhcccceecCCCcccHHHHhhhhhhhhhhh
Confidence            567799999999999999996 589999999999998888888877777766544333222                   


Q ss_pred             ----HHHHHHHHHHHHhcc-cCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCccccccc
Q 024067          125 ----DVIFALLSKRLEEGY-YRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRL  199 (273)
Q Consensus       125 ----~~~~~ll~~~l~~~~-~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~  199 (273)
                          .++...+...+.... .....-+|+++ |.-.+ ..   ....+|.+|+++||+++..+|+..|..          
T Consensus        82 ~~l~~i~hp~v~~~~~~~~~~~~~~~vv~e~-~ll~e-~~---~~~~~d~ii~v~~~~~~r~~R~~~R~~----------  146 (205)
T d1jjva_          82 LWLNNLLHPAIRERMKQKLAEQTAPYTLFVV-PLLIE-NK---LTALCDRILVVDVSPQTQLARSAQRDN----------  146 (205)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCSSEEEEEC-TTTTT-TT---CGGGCSEEEEEECCHHHHHHHHC--------------
T ss_pred             hHhhcccCHHHHHHHHHHHhhccCCeEEEEe-ccccc-cc---hhhhhhheeeecchHHHHHHHHHhcCC----------
Confidence                111122222222211 11233456664 43322 11   113578999999999999999998852          


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHH
Q 024067          200 GGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALH  258 (273)
Q Consensus       200 ~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~  258 (273)
                              .+.+.+.+++....    +..+.-...+  +.|+.+++.++..++|...+.
T Consensus       147 --------~s~e~~~~~~~~Q~----~~~~k~~~aD--~vI~N~~~l~~~~~~l~~~i~  191 (205)
T d1jjva_         147 --------NNFEQIQRIMNSQV----SQQERLKWAD--DVINNDAELAQNLPHLQQKVL  191 (205)
T ss_dssp             ---------CHHHHHHHHHHSC----CHHHHHHHCS--EEEECCSCHHHHHHHHHHHHH
T ss_pred             --------chHHHHHHHHHhCC----CHHHHHHhCC--EEEECCCChHHHHHHHHHHHH
Confidence                    12456666654321    1222222233  457778888887777766554

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=99.46  E-value=2.2e-13  Score=111.15  Aligned_cols=168  Identities=13%  Similarity=0.072  Sum_probs=95.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHH-HHHCCCCCCHH---------------
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIAN-AVNEGKLVPED---------------  125 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~-~l~~g~~~~~~---------------  125 (273)
                      .|++|.|+|++||||||+|+.| +++|++++++|++.++......+....+.. .+..+.....+               
T Consensus         2 ~p~IIgitG~~gSGKstva~~l-~~~g~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l   80 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALL-RSWGYPVLDLDALAARARENKEEELKRLFPEAVVGGRLDRRALARLVFSDPERLKAL   80 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHH-HHTTCCEEEHHHHHHHHHHHTHHHHHHHCGGGEETTEECHHHHHHHHTTSHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHH-HHCCCeEEEccHHHHHhhhcccccccccccceeccCchhhhhHHHhhhcCchhhhhh
Confidence            4788999999999999999999 568999999999887654332221111100 00011110000               


Q ss_pred             --HHHHHHHHHHHhcc-cCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCC
Q 024067          126 --VIFALLSKRLEEGY-YRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGA  202 (273)
Q Consensus       126 --~~~~ll~~~l~~~~-~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~  202 (273)
                        .+.......+.... ......+|+++.+.....     ....+|.+|+++||+++..+|+..|...            
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~vi~e~~~~~~~~-----~~~~~d~vI~v~a~~e~r~~Rl~~R~~~------------  143 (191)
T d1uf9a_          81 EAVVHPEVRRLLMEELSRLEAPLVFLEIPLLFEKG-----WEGRLHGTLLVAAPLEERVRRVMARSGL------------  143 (191)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCSEEEEECTTTTTTT-----CGGGSSEEEEECCCHHHHHHHHHTTTCC------------
T ss_pred             hhhhhHHHHHHHHhhhhhcccceEEEEeecccccc-----ccccceeEEEEecchhhHHHHHHhcccc------------
Confidence              01111111111110 123455677764321110     1135789999999999999999998521            


Q ss_pred             CCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHh
Q 024067          203 RFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHL  259 (273)
Q Consensus       203 ~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~  259 (273)
                            +.+.+..++..    ..+....-...+  +.|+.+++++++.++|...+..
T Consensus       144 ------~~~~~~~~~~~----q~~~~~~~~~aD--~vI~N~~s~~~l~~~v~~il~~  188 (191)
T d1uf9a_         144 ------SREEVLARERA----QMPEEEKRKRAT--WVLENTGSLEDLERALKAVLAE  188 (191)
T ss_dssp             ------TTHHHHHHHTT----SCCHHHHHHHCS--EEECCSSHHHHHHHHHHHHHHS
T ss_pred             ------hHHHHHHHHHh----CCCHHHHHHhCC--EEEECCCCHHHHHHHHHHHHHH
Confidence                  12344444332    112222222233  3578788999999999988764

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=8.4e-13  Score=109.57  Aligned_cols=165  Identities=12%  Similarity=0.107  Sum_probs=101.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCC-----CCCCHHH------------
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEG-----KLVPEDV------------  126 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g-----~~~~~~~------------  126 (273)
                      .+|.|+|++||||||+|+.|. ++|++++++|.+.++.+.++.+....+.+.+...     ..+....            
T Consensus         4 ~iIgitG~igSGKStv~~~l~-~~G~~vidaD~i~~~l~~~~~~~~~~i~~~fg~~i~~~~~~i~r~~L~~~vf~~~~~~   82 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFA-DLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPEEK   82 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH-HTTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHH-HCCCcEEEchHHHHHHHhccchHHHHHHHHhhcccccCCcccchhhhhhhhhhhHHHH
Confidence            367799999999999999886 6899999999999988877666666665554322     1122111            


Q ss_pred             ------HHHHHHHHHHhcc-cCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCccccccc
Q 024067          127 ------IFALLSKRLEEGY-YRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRL  199 (273)
Q Consensus       127 ------~~~ll~~~l~~~~-~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~  199 (273)
                            +...+.+.+.... ......++++. |.-.+. .   ....++.+|+++|++++..+|+..|...         
T Consensus        83 ~~Le~i~hp~v~~~~~~~~~~~~~~~~~~e~-~ll~e~-~---~~~~~~~iI~V~a~~e~r~~R~~~R~~~---------  148 (208)
T d1vhta_          83 NWLNALLHPLIQQETQHQIQQATSPYVLWVV-PLLVEN-S---LYKKANRVLVVDVSPETQLKRTMQRDDV---------  148 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCSSEEEEEC-TTTTTT-T---GGGGCSEEEEEECCHHHHHHHHHHHHTC---------
T ss_pred             HHHHHHhHHHHHHHHHHHHHHhhcCCcceee-eecccc-c---ccccCCEEEEEeCCHHHHHHHHHHhhhh---------
Confidence                  1222222222110 11234455554 322110 0   1135788999999999999999988632         


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHH
Q 024067          200 GGARFSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALH  258 (273)
Q Consensus       200 ~~~~~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~  258 (273)
                               +.+.+.+++..-    .+........+  +.|+.+++++++.++|.+.+.
T Consensus       149 ---------~~~~~~~~~~~Q----~~~~~k~~~aD--~vI~N~~~le~l~~~v~~l~~  192 (208)
T d1vhta_         149 ---------TREHVEQILAAQ----ATREARLAVAD--DVIDNNGAPDAIASDVARLHA  192 (208)
T ss_dssp             ---------CHHHHHHHHHHS----CCHHHHHHHCS--EEEECSSCTTSHHHHHHHHHH
T ss_pred             ---------hHHHHHHHHHhC----CCHHHHHHhCC--EEEECCCCHHHHHHHHHHHHH
Confidence                     233455554321    11222223334  557888999999988877655

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.40  E-value=6.4e-12  Score=103.21  Aligned_cols=171  Identities=16%  Similarity=0.136  Sum_probs=92.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh---CCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCH----HHHHHHHH----
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPE----DVIFALLS----  132 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~---g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~----~~~~~ll~----  132 (273)
                      ++|+|.|++||||||+++.|++.+   |..++-+     .+...+++.+..+......+.....    .....+..    
T Consensus         1 mlI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~-----~~P~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~   75 (208)
T d1gsia_           1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATL-----AFPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRA   75 (208)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE-----ESSCTTTCHHHHHHHHHHTTCSTTGGGCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE-----ecCCCCCccchhhhhhhccccccccccchHHHHHHHHHHHH
Confidence            579999999999999999999987   4444321     1122344555555554443332211    11111000    


Q ss_pred             ---HHHHhcccCCcceEEEeCCCCCHH--H---------------HHHHHhh----CCCceEEEEccCHHHHHHHHhcCC
Q 024067          133 ---KRLEEGYYRGESGFILDGIPRTRI--Q---------------AEILDQI----VDVDLVINFKSIEDQLVKRNLESE  188 (273)
Q Consensus       133 ---~~l~~~~~~~~~g~IlDg~P~~~~--q---------------a~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~  188 (273)
                         ..... ....+..+|.|.++.+..  +               ...++..    ..||++|+|+++++++.+|+.+|.
T Consensus        76 ~~~~~~~~-~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Pd~~i~L~~~~e~~~~Ri~~R~  154 (208)
T d1gsia_          76 GAVHTIQG-LCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRA  154 (208)
T ss_dssp             TTHHHHHH-HHHHSSEEEEESCHHHHHHHHHHHTTCCTTSHHHHHHHHHHTTTSCCCCCSEEEEECCCHHHHHHHHHHHH
T ss_pred             HHHHhHHH-HhhhcccccccchhhhHHHHHhhccchhhhhhhHHHHHHHHHHHhhccCCceeEEecccHHHHHHHHHhhh
Confidence               00100 012246678887654311  1               1112211    368999999999999999998886


Q ss_pred             cCCCcccccccCCCCCCCCCcHHHHHHHH-HHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHH
Q 024067          189 AFSPHKEFLRLGGARFSAADAASAWKEKF-RIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGL  253 (273)
Q Consensus       189 ~~~~~~~~y~~~~~~~~~~d~~e~~~~rl-~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I  253 (273)
                      .... +.      ....-+-+. .+.+++ +.|.+..+   . + ....|+.||++.++++|.++|
T Consensus       155 ~~~~-~~------~~d~~e~~~-~y~~~~~~~Y~~~~~---~-~-~~~~~~vIDa~~~~e~V~~~i  207 (208)
T d1gsia_         155 QRDP-GR------ARDNYERDA-ELQQRTGAVYAELAA---Q-G-WGGRWLVVGADVDPGRLAATL  207 (208)
T ss_dssp             HHCT-TC------CCCTTTTCH-HHHHHHHHHHHHHHH---H-T-TTSEEEEECTTCCHHHHHHHH
T ss_pred             cccc-cc------cccchhhHH-HHHHHHHHHHHHHHH---h-c-CCCCEEEEeCCCCHHHHHHhh
Confidence            4210 00      000011122 333333 34443211   0 0 113489999999999999886

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=2.3e-12  Score=103.89  Aligned_cols=101  Identities=15%  Similarity=0.033  Sum_probs=78.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccc
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY  140 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~  140 (273)
                      .+|..|+++|+|||||||+|+.|++.+++.+|+.|++...                        ......+...+..   
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~~~~~~i~~D~~~~~------------------------~~~~~~~~~~l~~---   64 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSW------------------------QRCVSSCQAALRQ---   64 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGGGTCEEEEHHHHCSH------------------------HHHHHHHHHHHHT---
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhcCCEEEchHHHHHH------------------------HHHHHHHHHHHHC---
Confidence            4678999999999999999999999999999999875421                        1123444555554   


Q ss_pred             CCcceEEEeCCCCCHHHHHHHHhh----CCCceEEEEccCHHHHHHHHhcCCcC
Q 024067          141 RGESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAF  190 (273)
Q Consensus       141 ~~~~g~IlDg~P~~~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~  190 (273)
                        +..+|+|+...+..+...+...    +..-.+|+|++|.+++.+|...|..+
T Consensus        65 --g~~vIiD~t~~~~~~R~~~~~~a~~~~~~~~~v~l~~~~e~~~~Rn~~R~~~  116 (172)
T d1yj5a2          65 --GKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMT  116 (172)
T ss_dssp             --TCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHH
T ss_pred             --CCCceeeCcCCCHHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHHHHhccc
Confidence              4789999988888877665432    33446899999999999999888643

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.38  E-value=3e-13  Score=107.55  Aligned_cols=165  Identities=10%  Similarity=0.005  Sum_probs=83.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechh-HHHHHHccCCChHHHHHHHHHHCCCCC--CHH--HHHHHHHHHHHh
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG-SLVRQELSPRSALYKQIANAVNEGKLV--PED--VIFALLSKRLEE  137 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~-dllr~~~~~~~~~g~~i~~~l~~g~~~--~~~--~~~~ll~~~l~~  137 (273)
                      .+.|+|+|+|||||||+|+.|+++++..+++++ +.+....... .........+..+...  .+.  .+...+...+..
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLK-MQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVA   81 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGG-GGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCCeEEeecchhhcccccc-ccchhHHhhhhcccchhHHHHHHHHHHHHHHHHHH
Confidence            457889999999999999999999997765433 2332221110 0000000001111111  111  111222221111


Q ss_pred             cccCCcceEEEeC-CCCCHHHHHHHHhh--CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHH
Q 024067          138 GYYRGESGFILDG-IPRTRIQAEILDQI--VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWK  214 (273)
Q Consensus       138 ~~~~~~~g~IlDg-~P~~~~qa~~l~~~--~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~  214 (273)
                      . ......++++. +.........+...  .....+|+|+|+++++.+|...|....               .+   ...
T Consensus        82 ~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~---------------~~---~~~  142 (178)
T d1qhxa_          82 M-ARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARGDRV---------------AG---MAA  142 (178)
T ss_dssp             H-HHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTSSSC---------------TT---HHH
T ss_pred             H-HhhccceEEeeeecchHHHHHHHHHhhcCCceeecccCCCHHHHHHHHHhcCCcc---------------hh---hhh
Confidence            1 11245566665 33333333332222  345578999999999999998886321               11   111


Q ss_pred             HHHHHHHHhhHHHHHHHHhcCcEEEEeCCC-ChhHHHHHHHHHH
Q 024067          215 EKFRIYAEQGKSLEDYYSKQRKLLNFQVAA-APGETWQGLLSAL  257 (273)
Q Consensus       215 ~rl~~y~~~~~~l~~~y~~~~~~~~id~~~-s~~ev~~~I~~~l  257 (273)
                      .....+          .+....=++||++. +++|+.+.|.+.|
T Consensus       143 ~~~~~~----------~~~~~~dl~IDts~~s~ee~a~~I~~~v  176 (178)
T d1qhxa_         143 KQAYVV----------HEGVEYDVEVDTTHKESIECAWAIAAHV  176 (178)
T ss_dssp             HHTTGG----------GTTCCCSEEEETTSSCHHHHHHHHHTTC
T ss_pred             hhhhhh----------hcCCCCCEEEECCCCCHHHHHHHHHHhc
Confidence            111111          11111125789875 8999999998653

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=5e-11  Score=99.61  Aligned_cols=81  Identities=9%  Similarity=0.037  Sum_probs=49.2

Q ss_pred             CCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHhhHHHH----HHHHhcCcEEEEe
Q 024067          166 DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKSLE----DYYSKQRKLLNFQ  241 (273)
Q Consensus       166 ~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~l~----~~y~~~~~~~~id  241 (273)
                      .||++|+|+++++++++|+..|+....             ...+.+.+++--+.|.+......    ..+.....+++||
T Consensus       152 ~Pdl~i~Ld~~pe~~~~Ri~~r~~~~e-------------~~~~~~yl~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~ID  218 (241)
T d1p5zb_         152 ELDGIIYLQATPETCLHRIYLRGRNEE-------------QGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLD  218 (241)
T ss_dssp             CCSEEEEEECCHHHHHHHHHHHCCGGG-------------TTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGGSCEEEEE
T ss_pred             CCceeeeeccCHHHHHHHHHhhcchhh-------------hcCCHHHHHHHHHHHHHHHHHhhhhhhHhhcCCCCEEEEE
Confidence            699999999999999999987763210             01122222222223322111000    0001123688999


Q ss_pred             CCCChhHHHHHHHHHHHh
Q 024067          242 VAAAPGETWQGLLSALHL  259 (273)
Q Consensus       242 ~~~s~~ev~~~I~~~l~~  259 (273)
                      ++.+++++.++|.+.+..
T Consensus       219 ~~~~ie~v~~~i~~~i~~  236 (241)
T d1p5zb_         219 VNEDFKDKYESLVEKVKE  236 (241)
T ss_dssp             CCSCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999988854

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.20  E-value=5.8e-11  Score=95.88  Aligned_cols=161  Identities=13%  Similarity=0.079  Sum_probs=93.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCC----Ch----HHHHHHHHHHCCCCCCHH---------
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPR----SA----LYKQIANAVNEGKLVPED---------  125 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~----~~----~g~~i~~~l~~g~~~~~~---------  125 (273)
                      |..|+|+||+||||||+++.|.+++.-.+++....-|. ..++    ..    .-+.+.+....|..+...         
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~tTR~-~r~~e~~G~dy~fvs~~~f~~~~~~~~f~e~~~~~~~~~~~   80 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRA-PRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRS   80 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSC-CCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCCCeEEEEeeccC-CCccccCCcceeeccchhhhhhhcccccchhhhcccCcccc
Confidence            57899999999999999999999985444433222221 1111    00    114455555555443221         


Q ss_pred             -HHHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhh-CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCC
Q 024067          126 -VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGAR  203 (273)
Q Consensus       126 -~~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~  203 (273)
                       +....+...+..     +..+++|..+....   .+... ..+..++++.++.+++.+|+..|..              
T Consensus        81 g~~~~~~~~~~~~-----g~~~i~~~~~~g~~---~l~~~~~~~~~i~i~~~s~e~L~~RL~~Rg~--------------  138 (182)
T d1znwa1          81 GTLAQPVRAAAAT-----GVPVLIEVDLAGAR---AIKKTMPEAVTVFLAPPSWQDLQARLIGRGT--------------  138 (182)
T ss_dssp             EEEHHHHHHHHHH-----TCCEEEECCHHHHH---HHHHHCTTSEEEEEECSCHHHHHHHHHTTSC--------------
T ss_pred             ccccchhhhhhhc-----CCccccccccchhh---hhhhcCcceeEEeeecccHHHHHHHhhhcCc--------------
Confidence             111222333333     35677776543333   23222 3454566666788999999999873              


Q ss_pred             CCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHH
Q 024067          204 FSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSAL  257 (273)
Q Consensus       204 ~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l  257 (273)
                          ++++.+++|+..+....    .++...+. + |. +.+.++.+++|.+.|
T Consensus       139 ----~~~e~I~~Rl~~~~~e~----~~~~~fD~-v-I~-Nddle~a~~~l~~iI  181 (182)
T d1znwa1         139 ----ETADVIQRRLDTARIEL----AAQGDFDK-V-VV-NRRLESACAELVSLL  181 (182)
T ss_dssp             ----SCHHHHHHHHHHHHHHH----HGGGGSSE-E-EE-CSSHHHHHHHHHHHH
T ss_pred             ----chHHHHHHHHHHHHHHH----hhHhcCCE-E-EE-CcCHHHHHHHHHHHh
Confidence                34678899998776432    22222232 3 33 458999999998875

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1.6e-11  Score=99.27  Aligned_cols=39  Identities=26%  Similarity=0.213  Sum_probs=33.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQ  100 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~  100 (273)
                      +|+.|+|+|+|||||||+|+.|+++++..+++++.+...
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~~d   56 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD   56 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEECHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccchhHH
Confidence            789999999999999999999999998877776554443

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.10  E-value=2.2e-11  Score=99.62  Aligned_cols=118  Identities=13%  Similarity=0.176  Sum_probs=66.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCC-----eechhHHHHHHccCCChHHHHHHHHHHCCCC----CCHHHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVP-----HISMGSLVRQELSPRSALYKQIANAVNEGKL----VPEDVIFALLSK  133 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~-----~is~~dllr~~~~~~~~~g~~i~~~l~~g~~----~~~~~~~~ll~~  133 (273)
                      |..|+++|.|||||||+|++|++.++..     .++.| .+|............    ...+..    .........+..
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D-~~r~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~   76 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVG-QYRRDMVKTYKSFEF----FLPDNEEGLKIRKQCALAALND   76 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH-HHHHHHHCSCCCGGG----GCTTCHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEccc-ceehhhccccccccc----cccccccchhhHHHHHHHHHHH
Confidence            6789999999999999999999988643     45554 455444322110000    000000    001122222222


Q ss_pred             HHHhcccCCcceEEEeCCCCCHHHHHHHHhh----CCCceEEEEccCHHHHHHHHh
Q 024067          134 RLEEGYYRGESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNL  185 (273)
Q Consensus       134 ~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~  185 (273)
                      .+..........+|+|+......+...+..+    ..+.+++.+.|+++.+.++..
T Consensus        77 ~~~~~~~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (213)
T d1bifa1          77 VRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANI  132 (213)
T ss_dssp             HHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHH
T ss_pred             HHHHHHhcCCCEEEeecCCccHHHHHHHHHHHHhcCCeEEEEEeeccHHHHHHHhH
Confidence            2221111234567899988777776655432    345577888888877766543

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.10  E-value=1.6e-10  Score=95.79  Aligned_cols=165  Identities=13%  Similarity=0.043  Sum_probs=88.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh----CC--CeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL----EV--PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKR  134 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~----g~--~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~  134 (273)
                      .+|+.|.|+|.|||||||+|+.|++++    +.  .+++. |.+|+.+...-.+.+.-+....       .-...+....
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldg-D~iR~~l~~~l~ys~~~r~~~~-------~r~~~~a~~~   93 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG-DNIRFGLNKDLGFSEADRNENI-------RRIAEVAKLF   93 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH-HHHTTTTTTTCCSSHHHHHHHH-------HHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcc-hHHHHhhcCCCCCChhHHHHHH-------HHHHHHHHHH
Confidence            578999999999999999999999766    33  34554 5566655322111111100000       0011111111


Q ss_pred             HHhcccCCcceEEEeCCCCCHHHHHHHHh----------hCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCC
Q 024067          135 LEEGYYRGESGFILDGIPRTRIQAEILDQ----------IVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF  204 (273)
Q Consensus       135 l~~~~~~~~~g~IlDg~P~~~~qa~~l~~----------~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~  204 (273)
                      ..     .+..+|++.........+...+          ...+.+.||++||.+++.+|...+....             
T Consensus        94 ~~-----~g~~viv~~i~~~~~~R~~~r~i~~~~~~~~~~~~~~~eVyv~~~le~~~~Rd~k~~y~~-------------  155 (208)
T d1m7ga_          94 AD-----SNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYKK-------------  155 (208)
T ss_dssp             HH-----TTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTCHHHH-------------
T ss_pred             hc-----cCCceeeecccccHHHHHHHHHHhhhhccchhcCCceEEEEEcCCHHHHHHhhcccchhh-------------
Confidence            12     2456777765444333322221          1245578999999999998865443100             


Q ss_pred             CCCCcHHHHHHHHHHHHHhhHHHHHHHHhc-CcEEEEeCC-CChhHHHHHHHHHHHhcCC
Q 024067          205 SAADAASAWKEKFRIYAEQGKSLEDYYSKQ-RKLLNFQVA-AAPGETWQGLLSALHLQHM  262 (273)
Q Consensus       205 ~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~-~~~~~id~~-~s~~ev~~~I~~~l~~~~~  262 (273)
                             ..+..+..+    ..+..-|+.. +.-++||++ .++++..++|.++|..++.
T Consensus       156 -------~~~~~~~~~----~gvd~~ye~P~~~dl~Idt~~~s~~e~~~~Ii~~L~~~~~  204 (208)
T d1m7ga_         156 -------AREGVIKEF----TGISAPYEAPANPEVHVKNYELPVQDAVKQIIDYLDTKGY  204 (208)
T ss_dssp             -------HHHTSSSSC----BTTTBCCCCCSSCSEEEECSSSCHHHHHHHHHHHHHHTTC
T ss_pred             -------hhcCcccce----ecccccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence                   000000000    0000012211 123567765 4899999999999998864

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.09  E-value=1.1e-10  Score=94.75  Aligned_cols=162  Identities=10%  Similarity=0.087  Sum_probs=95.7

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCCe-echhHHHHHHccC----CCh----HHHHHHHHHHCCCCCCHH--------HHH
Q 024067           66 WVLIGDPGVKKHVYADNLSKLLEVPH-ISMGSLVRQELSP----RSA----LYKQIANAVNEGKLVPED--------VIF  128 (273)
Q Consensus        66 Ivi~G~pGSGKsT~a~~La~~~g~~~-is~~dllr~~~~~----~~~----~g~~i~~~l~~g~~~~~~--------~~~  128 (273)
                      |+|+||+||||+|+++.|++++...+ +.....-| ...+    +..    ..+.+...+.+|..+...        +..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR-~~r~~E~~g~dy~fvs~~~f~~~~~~g~f~e~~~~~g~~Yg~~~   82 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTR-TPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTV   82 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECS-CCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEEEEEH
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccC-CCCCCCcCCccceeccHHHHHHHHhcccceeeeEEccceeecch
Confidence            78999999999999999999875321 11000001 0001    000    124556666666654321        112


Q ss_pred             HHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCC
Q 024067          129 ALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAAD  208 (273)
Q Consensus       129 ~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d  208 (273)
                      ..+...+..     +..+|+|+.|....+...+- -..+..++++..+.+++.+|+..|+.                  +
T Consensus        83 ~~i~~~~~~-----g~~~i~~~~~~~~~~lk~~~-~~~~~~i~~~~~~~e~l~~RL~~Rg~------------------~  138 (186)
T d1gkya_          83 ASVKQVSKS-----GKTCILDIDMQGVKSVKAIP-ELNARFLFIAPPSVEDLKKRLEGRGT------------------E  138 (186)
T ss_dssp             HHHHHHHHH-----TSEEEEECCHHHHHHHHTCG-GGCCEEEEEECSCHHHHHHHHHHHSC------------------S
T ss_pred             hhHHHHhcC-----CCeEEecchHHHHHHHHHhh-cccceEEEecCCcHHHHHHHHHhhcc------------------c
Confidence            233333443     35788888764444432211 12456678888899999999998873                  3


Q ss_pred             cHHHHHHHHHHHHHhhHHHHHHHHhcCc--EEEEeCCCChhHHHHHHHHHHHh
Q 024067          209 AASAWKEKFRIYAEQGKSLEDYYSKQRK--LLNFQVAAAPGETWQGLLSALHL  259 (273)
Q Consensus       209 ~~e~~~~rl~~y~~~~~~l~~~y~~~~~--~~~id~~~s~~ev~~~I~~~l~~  259 (273)
                      +++.+.+|+..+.....     +...+.  .+.+  +.++++.+++|.++|..
T Consensus       139 ~~~~I~~Rl~~~~~e~~-----~~~~~~fd~vI~--N~dle~a~~~l~~iI~~  184 (186)
T d1gkya_         139 TEESINKRLSAAQAELA-----YAETGAHDKVIV--NDDLDKAYKELKDFIFA  184 (186)
T ss_dssp             CHHHHHHHHHHHHHHHH-----HHTTTCSSEEEE--CSSHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHH-----hhhhcCCCEEEE--CcCHHHHHHHHHHHHHh
Confidence            46788889887654322     112111  3333  35899999999998865

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.1e-10  Score=97.85  Aligned_cols=31  Identities=19%  Similarity=0.230  Sum_probs=27.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHIS   93 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is   93 (273)
                      |+.|+|.|+.||||||+++.|++.++-..+.
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~~~i~   32 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWHVA   32 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTTSEEE
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhhcCCc
Confidence            6899999999999999999999999765553

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.1e-10  Score=96.22  Aligned_cols=115  Identities=14%  Similarity=0.121  Sum_probs=66.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCC----------CeechhHHHHHHccCCChHHHHHHHHHHCCCC-------CCHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEV----------PHISMGSLVRQELSPRSALYKQIANAVNEGKL-------VPED  125 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~----------~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~-------~~~~  125 (273)
                      |.+|.|.|++||||||+|+.|++.++.          .+|++|+..+.    .... ..  .....+..       ...+
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D~yy~~----~~~~-~~--~~~~~~~~~~~~~~~~~~~   74 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRV----LTSE-QK--AKALKGQFNFDHPDAFDNE   74 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCC----CCHH-HH--HHHHTTCSCTTSGGGBCHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEeccccccc----cchh-hh--hhhhhcccccCCcHHHHHH
Confidence            678899999999999999999999964          34666665421    0010 00  01111111       1123


Q ss_pred             HHHHHHHHHHHhcc-------------------cCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhc
Q 024067          126 VIFALLSKRLEEGY-------------------YRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLE  186 (273)
Q Consensus       126 ~~~~ll~~~l~~~~-------------------~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~  186 (273)
                      ...+.+........                   ......+|++|.+.-...  .+.  ..+|+.|+++++.++.++|...
T Consensus        75 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiveg~~~l~~~--~l~--~~~D~~i~v~~~~~~~~~R~~~  150 (213)
T d1uj2a_          75 LILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQ--EVR--DLFQMKLFVDTDADTRLSRRVL  150 (213)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSH--HHH--HHCSEEEEEECCHHHHHHHHHH
T ss_pred             HHHhhhhhhhcCCcccccccccccccccCceEEecccceEEecchhhhccH--HHH--hhhheeeeecCCHHHHHHHHHH
Confidence            33344433322110                   012345678887642211  111  1368999999999999999887


Q ss_pred             CC
Q 024067          187 SE  188 (273)
Q Consensus       187 R~  188 (273)
                      |.
T Consensus       151 Rd  152 (213)
T d1uj2a_         151 RD  152 (213)
T ss_dssp             HH
T ss_pred             HH
Confidence            74

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.01  E-value=5.2e-11  Score=94.37  Aligned_cols=33  Identities=21%  Similarity=0.133  Sum_probs=28.6

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCCee
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHI   92 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~i   92 (273)
                      +.+|+.|+|+|+|||||||+|+.|+++++..++
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~~L~~~~~   35 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGG   35 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCS
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence            457899999999999999999999999964433

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.96  E-value=2.9e-10  Score=92.61  Aligned_cols=162  Identities=12%  Similarity=0.067  Sum_probs=91.3

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCCe-echhHHHHHHccCC----Ch----HHHHHHHHHHCCCCCCHHH--------HH
Q 024067           66 WVLIGDPGVKKHVYADNLSKLLEVPH-ISMGSLVRQELSPR----SA----LYKQIANAVNEGKLVPEDV--------IF  128 (273)
Q Consensus        66 Ivi~G~pGSGKsT~a~~La~~~g~~~-is~~dllr~~~~~~----~~----~g~~i~~~l~~g~~~~~~~--------~~  128 (273)
                      |||+||+||||+|+++.|+++++..+ .......|. ..++    ..    ..+.+.++...|..+....        ..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~~~~~~~~~~TTR~-~r~~E~~g~dy~fvs~~~f~~~~~~g~~~e~~~~~~~~Yg~~~   81 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRN-PRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYGTSK   81 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSC-CCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEEEH
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCceeEEEEEeccC-CCCCCccCceeEEeehhHHHHHhhhhhheeeeEEcCcceeccc
Confidence            78999999999999999999986432 111111110 0011    00    1244555566665543211        11


Q ss_pred             HHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhh-CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCC
Q 024067          129 ALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAA  207 (273)
Q Consensus       129 ~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~  207 (273)
                      .-+...+..     +..++++..+   .-...+... ..+..|+++..+.+++.+|+..|..                  
T Consensus        82 ~~v~~~~~~-----g~~~~~~~~~---~~~~~l~~~~~~~~~I~i~~~~~e~l~~RL~~R~~------------------  135 (190)
T d1lvga_          82 EAVRAVQAM-----NRICVLDVDL---QGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNT------------------  135 (190)
T ss_dssp             HHHHHHHHT-----TCEEEEECCH---HHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTC------------------
T ss_pred             chhhhhhcC-----CCceeecchH---hhhhhhhhccccceEEEEecchHHHHHHHHhhccc------------------
Confidence            223333333     3556777643   222333322 3454566666678999999988863                  


Q ss_pred             CcHHHHHHHHHHHHHhhHHHHHHHHhcC--cEEEEeCCCChhHHHHHHHHHHHhc
Q 024067          208 DAASAWKEKFRIYAEQGKSLEDYYSKQR--KLLNFQVAAAPGETWQGLLSALHLQ  260 (273)
Q Consensus       208 d~~e~~~~rl~~y~~~~~~l~~~y~~~~--~~~~id~~~s~~ev~~~I~~~l~~~  260 (273)
                      ++.+.+.+|+..+.....    +....+  ..+.+|  .+.++.+++|..+|...
T Consensus       136 ~~~e~i~~rl~~~~~~~~----~~~~~~~fd~iI~N--~dle~a~~~l~~iI~~~  184 (190)
T d1lvga_         136 ETEESLAKRLAAARTDME----SSKEPGLFDLVIIN--DDLDKAYATLKQALSEE  184 (190)
T ss_dssp             SCHHHHHHHHHHHHHHTT----GGGSTTTCSEEEEC--SSHHHHHHHHHHHTHHH
T ss_pred             cchHHHHHHHHHHHHHHH----hhhhcCCCCEEEEC--cCHHHHHHHHHHHHHHH
Confidence            356788999987765432    122211  133333  47889999998877643

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.94  E-value=4.8e-10  Score=90.95  Aligned_cols=32  Identities=16%  Similarity=0.240  Sum_probs=28.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCCee
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHI   92 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~i   92 (273)
                      .+|+.|+|.|+.||||||+++.|++.++...+
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l~~~~~   38 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEKYKNDICL   38 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGGTTTEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence            57899999999999999999999999975544

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.91  E-value=1.1e-09  Score=90.33  Aligned_cols=164  Identities=12%  Similarity=0.123  Sum_probs=98.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCC--CeechhHHHHHHccCCC----h----HHHHHHHHHHCCCCCCHHHH-----
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEV--PHISMGSLVRQELSPRS----A----LYKQIANAVNEGKLVPEDVI-----  127 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~--~~is~~dllr~~~~~~~----~----~g~~i~~~l~~g~~~~~~~~-----  127 (273)
                      |+.|+|+||+||||+|+.+.|.+.+..  ...++...-|. ..++.    .    .-+.+.+++.+|..+....+     
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~-~R~~E~~G~dY~Fvs~~~F~~~i~~g~flE~~~~~g~~Y   80 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQ-PRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYY   80 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSC-CCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccC-CCccccccccceeecHHHHHHHhhhhhheeEEEECCcee
Confidence            678999999999999999999998752  11111111111 11111    1    12466777777776543211     


Q ss_pred             ---HHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhh-CCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCC
Q 024067          128 ---FALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGAR  203 (273)
Q Consensus       128 ---~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~  203 (273)
                         ..-+...+..     +..+|+|.-+....+   +... ..+-.++++..+.+++.+|+..|..              
T Consensus        81 Gt~~~~v~~~~~~-----g~~~ildid~~g~~~---lk~~~~~~~~ifi~pps~~~l~~RL~~Rg~--------------  138 (205)
T d1s96a_          81 GTSREAIEQVLAT-----GVDVFLDIDWQGAQQ---IRQKMPHARSIFILPPSKIELDRRLRGRGQ--------------  138 (205)
T ss_dssp             EEEHHHHHHHHTT-----TCEEEEECCHHHHHH---HHHHCTTCEEEEEECSSHHHHHHHHHTTSC--------------
T ss_pred             ccccchHHHHHhc-----CCceeecCcHHHHHH---HHhhhcccceeeeeccchHHHHHHHHhcCC--------------
Confidence               2333444443     478899976544333   3222 2333455566777889999999873              


Q ss_pred             CCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhc
Q 024067          204 FSAADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQ  260 (273)
Q Consensus       204 ~~~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~  260 (273)
                          ++++.++.|+........    ++...+ .+.+|  .+.++.+++|.++|...
T Consensus       139 ----~~~~~i~~Rl~~a~~E~~----~~~~fD-~vIvN--ddl~~a~~el~~iI~~e  184 (205)
T d1s96a_         139 ----DSEEVIAKRMAQAVAEMS----HYAEYD-YLIVN--DDFDTALTDLKTIIRAE  184 (205)
T ss_dssp             ----SCHHHHHHHHHHHHHHHT----TGGGSS-EEEEC--SSHHHHHHHHHHHHHHH
T ss_pred             ----chHHHHHHHHHHHHHHHH----HHhCCC-EEEEC--cCHHHHHHHHHHHHHHH
Confidence                345677888876654322    222223 33344  57999999999998644

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.87  E-value=1.6e-08  Score=79.66  Aligned_cols=34  Identities=12%  Similarity=0.119  Sum_probs=31.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG   95 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~   95 (273)
                      ..++|+|+|+|||||||+|+.|+++||.+++..+
T Consensus         6 ~~K~I~i~G~~GsGKTTla~~La~~~~~~~i~~~   39 (192)
T d1lw7a2           6 FAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEY   39 (192)
T ss_dssp             TCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHhCCCeEeee
Confidence            4678999999999999999999999999998754

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.64  E-value=8e-09  Score=87.10  Aligned_cols=120  Identities=11%  Similarity=0.045  Sum_probs=66.0

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhC--CCeechhHHHHHHccCCChHHHHHHHHHHCC----CCCCHHHHHHHHHH
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSKLLE--VPHISMGSLVRQELSPRSALYKQIANAVNEG----KLVPEDVIFALLSK  133 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~g--~~~is~~dllr~~~~~~~~~g~~i~~~l~~g----~~~~~~~~~~ll~~  133 (273)
                      ...|..|+|.|||||||||+|+.||+.++  +..|+++++.. ....   ...........-    ...........+..
T Consensus        29 ~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (273)
T d1gvnb_          29 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQ-QHPN---FDELVKLYEKDVVKHVTPYSNRMTEAIISR  104 (273)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHT-TSTT---HHHHHHHHGGGCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHHH-Hhcc---CcccchhhhHHHHHHHHhhccchHHHHHHH
Confidence            34677899999999999999999999985  56677765532 2111   111111110000    00001112222222


Q ss_pred             HHHhcccCCcceEEEeCCCCCHHHHHHH-Hh---hCCCceEEEEccCHHHHHHHHhcCC
Q 024067          134 RLEEGYYRGESGFILDGIPRTRIQAEIL-DQ---IVDVDLVINFKSIEDQLVKRNLESE  188 (273)
Q Consensus       134 ~l~~~~~~~~~g~IlDg~P~~~~qa~~l-~~---~~~~d~vI~L~~~~e~l~~Rl~~R~  188 (273)
                      .+..     ..+.++|...+...+...+ ..   ......++.+.++.+....|...|.
T Consensus       105 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~R~  158 (273)
T d1gvnb_         105 LSDQ-----GYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERY  158 (273)
T ss_dssp             HHHH-----TCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHH
T ss_pred             HHhh-----CCCCcccccccchHHHHHHHHHHHHcCCeEEEEecCCCchhhhhHHhcCC
Confidence            3322     3567788766654443322 22   2233356778889999888877663

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.57  E-value=1.4e-08  Score=81.27  Aligned_cols=29  Identities=21%  Similarity=0.114  Sum_probs=25.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV   89 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g~   89 (273)
                      ..+++|.|.|++||||||+|+.|++.++.
T Consensus        20 ~~~~iIgI~G~~GSGKSTla~~L~~~l~~   48 (198)
T d1rz3a_          20 AGRLVLGIDGLSRSGKTTLANQLSQTLRE   48 (198)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            45778889999999999999999998864

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=98.49  E-value=5.7e-07  Score=78.73  Aligned_cols=28  Identities=18%  Similarity=0.071  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEV   89 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~   89 (273)
                      ..++|+|.|+.||||||+++.|++.++.
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~~l~~   30 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVALGSR   30 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC----
T ss_pred             CceEEEEECCcCCCHHHHHHHHHHHhCC
Confidence            4568999999999999999999988753

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=98.48  E-value=7.8e-07  Score=78.05  Aligned_cols=127  Identities=11%  Similarity=0.073  Sum_probs=68.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCC--eechhH-H-HHHHccCCChHHHHHHHHHH---CCCCCCHHHH--H----
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP--HISMGS-L-VRQELSPRSALYKQIANAVN---EGKLVPEDVI--F----  128 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~--~is~~d-l-lr~~~~~~~~~g~~i~~~l~---~g~~~~~~~~--~----  128 (273)
                      +.++|+|.|+.||||||+++.|++.++..  ++-..+ + .++. ..++++.+.+.+...   +|.....+..  .    
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~~EPm~yW~~-~~g~~~l~~iy~~~~~~~~~~~~~~~~~~~~~~~Q   83 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASAASGGSPTLYFPEPMAYWRT-LFETDVISGIYDTQNRKQQGNLAVDDAALITAHYQ   83 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSGGGCSSCEEEECCCHHHHHT-SSSSCHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHHhccCCCeEEEeCchhhhcc-cCCCchHHHHHHhHHhccccccchhhHHHHHHHHH
Confidence            46799999999999999999999988532  211111 0 1111 123444444443322   2322221110  0    


Q ss_pred             -------HHHHHHHHhcc--------cCCcceEEEeCCCCCHH--HH--------------HHHHhh----CCCceEEEE
Q 024067          129 -------ALLSKRLEEGY--------YRGESGFILDGIPRTRI--QA--------------EILDQI----VDVDLVINF  173 (273)
Q Consensus       129 -------~ll~~~l~~~~--------~~~~~g~IlDg~P~~~~--qa--------------~~l~~~----~~~d~vI~L  173 (273)
                             ..+..++....        ......+|+|-+|-+..  .+              ..+...    ..||.+|+|
T Consensus        84 ~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vI~DR~~~Ss~~iF~~~~y~~G~ls~~~~~~l~~~~~~~~~pd~iIyL  163 (333)
T d1p6xa_          84 SRFTTPYLILHDHTCTLFGGNSLQRGTQPDLTLVFDRHPVASTVCFPAARYLLGDMSMCALMAMVATLPREPQGGNIVVT  163 (333)
T ss_dssp             HHHHHHHHHHHHHHHTTSCEEEECCCSCCSEEEEEESCTHHHHTHHHHHHHHTTSSCHHHHHHHHTTCCCCCTTEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhcccccCCCeEEEECCcccchHHHHHHhhcCCCCCHHHHHHHHHHhcccCCCCEEEEE
Confidence                   11122222110        01233478898764321  11              111111    257999999


Q ss_pred             ccCHHHHHHHHhcCCc
Q 024067          174 KSIEDQLVKRNLESEA  189 (273)
Q Consensus       174 ~~~~e~l~~Rl~~R~~  189 (273)
                      ++++++.++|+.+|+.
T Consensus       164 d~~pe~~l~RI~~RgR  179 (333)
T d1p6xa_         164 TLNVEEHIRRLRTRAR  179 (333)
T ss_dssp             ECCHHHHHHHHHHHSC
T ss_pred             eCCHHHHHHHHHHcCC
Confidence            9999999999988864

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=98.43  E-value=3.8e-06  Score=73.47  Aligned_cols=28  Identities=18%  Similarity=0.235  Sum_probs=24.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~   90 (273)
                      .++|+|.|+.||||||+++.|++.++..
T Consensus         5 ~lrI~IEG~iGsGKSTl~~~L~~~l~~~   32 (331)
T d1osna_           5 VLRIYLDGAYGIGKTTAAEEFLHHFAIT   32 (331)
T ss_dssp             EEEEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence            3679999999999999999999998653

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.24  E-value=3.1e-07  Score=76.30  Aligned_cols=40  Identities=15%  Similarity=0.074  Sum_probs=34.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHc
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL  102 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~  102 (273)
                      |.+|.|+|++||||||+|+.|++++|+++++.+|.+.+.+
T Consensus         1 M~iIgiTG~igSGKsTva~~l~e~~g~~~i~~aD~i~~~l   40 (241)
T d1deka_           1 MKLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDAL   40 (241)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCCCeEEcccHHHHHHH
Confidence            4678899999999999999999999999999666665543

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=98.18  E-value=1.3e-06  Score=74.98  Aligned_cols=150  Identities=9%  Similarity=0.128  Sum_probs=77.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh---CC--CeechhHHHHHHccCCChHHHHHHHH--HHCCCC---CCH----HHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL---EV--PHISMGSLVRQELSPRSALYKQIANA--VNEGKL---VPE----DVI  127 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~---g~--~~is~~dllr~~~~~~~~~g~~i~~~--l~~g~~---~~~----~~~  127 (273)
                      ++++|.|+|++||||||+++.|.+.+   ++  .+|+.|+..+..   .........+.  ..++..   -|+    +..
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfyr~~---R~~~~~~~~~~~~~~~~~~~~~~P~A~d~dlL   79 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFN---RADMKAELDRRYAAGDATFSHFSYEANELKEL   79 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSCC---HHHHHHHHHHHHHHTCTTCSTTSGGGBCHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCCccc---hhhhhhhhhhhhhhhccCCCCCCcccccHHHH
Confidence            56689999999999999999999877   34  478888876310   00111111111  111111   122    344


Q ss_pred             HHHHHHHHHhccc-----------------------------CCcceEEEeCCCCCHH-HHHHHHhhCCCceEEEEccCH
Q 024067          128 FALLSKRLEEGYY-----------------------------RGESGFILDGIPRTRI-QAEILDQIVDVDLVINFKSIE  177 (273)
Q Consensus       128 ~~ll~~~l~~~~~-----------------------------~~~~g~IlDg~P~~~~-qa~~l~~~~~~d~vI~L~~~~  177 (273)
                      .+.+....+....                             ....-+|++|.-.-.. ....+  ....|+-|+++++.
T Consensus        80 ~~~l~~L~~g~~i~~p~Ydh~~~~~~~~~~~~~~~t~~~~~~~~~dvIivEGlh~l~~~~~~~i--r~~~DlkIfVd~d~  157 (288)
T d1a7ja_          80 ERVFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNI--AGLADLKIGVVPVI  157 (288)
T ss_dssp             HHHHHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSSCBC--GGGCSEEEEEEECH
T ss_pred             HHHHHHHHCCCcccceeeeeecCcccccccCCCCCCcceeecCCCceEEEechhhccccchhhh--HhhcCeEEEEECCC
Confidence            4444332221100                             0123456666421100 00000  01478999999999


Q ss_pred             HHHHHHHhcCCcCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHhhHH
Q 024067          178 DQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQGKS  226 (273)
Q Consensus       178 e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d~~e~~~~rl~~y~~~~~~  226 (273)
                      +..+.|...|....   |       +...+...+.+.+++-.|...+.|
T Consensus       158 dlrliRRI~RD~~e---R-------G~s~E~V~~~i~rrmpdy~~yI~P  196 (288)
T d1a7ja_         158 NLEWIQKIHRDRAT---R-------GYTTEAVTDVILRRMHAYVHCIVP  196 (288)
T ss_dssp             HHHHHHHHHHTSSS---C-------CSCCCCHHHHHHHHHHHHHHHTGG
T ss_pred             CeEEEeeehhhhhh---c-------CCCHHHHHHHHHhcchHHHHHHHH
Confidence            99988887776532   1       112344456666777777766554

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=98.10  E-value=1.3e-06  Score=75.74  Aligned_cols=39  Identities=26%  Similarity=0.248  Sum_probs=33.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC-------CCeechhHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-------VPHISMGSLVR   99 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~g-------~~~is~~dllr   99 (273)
                      ..|.+|.|.|++||||||+|+.|++.+.       +..|++|+++.
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~~  123 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLH  123 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeEC
Confidence            4688899999999999999999999873       34688998863

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=2.7e-05  Score=61.74  Aligned_cols=25  Identities=24%  Similarity=0.303  Sum_probs=22.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhC
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      +.|+|+||+||||+|+.+.|.+++.
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~~   28 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKHP   28 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhCC
Confidence            4688999999999999999998874

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.90  E-value=3.5e-06  Score=69.51  Aligned_cols=30  Identities=23%  Similarity=0.279  Sum_probs=27.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHIS   93 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~~is   93 (273)
                      ..++|.||||+||||+|+.|++++++.++.
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~~~~~~~~   65 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASELQTNIHV   65 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CeEEEECCCCCcHHHHHHHHHhccCCCccc
Confidence            468899999999999999999999988764

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.84  E-value=3.9e-06  Score=65.66  Aligned_cols=27  Identities=22%  Similarity=0.471  Sum_probs=24.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEVP   90 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~~   90 (273)
                      ++|+|+|||||||||+++.|+..++..
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~l~~~   27 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             CEEEEECCCCcHHHHHHHHHHhcCCCC
Confidence            579999999999999999999988653

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.82  E-value=6.4e-06  Score=69.00  Aligned_cols=32  Identities=25%  Similarity=0.323  Sum_probs=28.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      +.-|+|.||||+|||++|+.||+.++++++.+
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~~~~~~~~i   71 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEESNFPFIKI   71 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhccccccccc
Confidence            45689999999999999999999999988865

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.80  E-value=5.7e-06  Score=68.27  Aligned_cols=32  Identities=25%  Similarity=0.281  Sum_probs=27.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      +..++|.||||+||||+|+.|++.+++++..+
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~~~~~~~~~   66 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHELGVNLRVT   66 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence            45688999999999999999999999876543

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=6.9e-06  Score=69.24  Aligned_cols=36  Identities=22%  Similarity=0.402  Sum_probs=30.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeec--hhHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHIS--MGSLV   98 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is--~~dll   98 (273)
                      +.-|+|.||||+|||++++.||+.++.+++.  ..+++
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~~~~l~   82 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV   82 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSST
T ss_pred             CCeEEeeCCCCCCccHHHHHHHHHcCCCEEEEEhHHhh
Confidence            4568899999999999999999999988744  44444

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.76  E-value=7.9e-06  Score=68.49  Aligned_cols=37  Identities=30%  Similarity=0.406  Sum_probs=31.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeec--hhHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHIS--MGSLVR   99 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is--~~dllr   99 (273)
                      +.-|+|.||||+|||++++.|+++++++++.  ..+++.
T Consensus        42 ~~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~   80 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE   80 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred             CceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhhh
Confidence            4568999999999999999999999988755  456554

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.75  E-value=1.1e-05  Score=66.88  Aligned_cols=31  Identities=23%  Similarity=0.196  Sum_probs=27.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCee
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHI   92 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~i   92 (273)
                      ....++|.||||+||||+++.||+.+++.++
T Consensus        51 ~~~~lll~GPpG~GKTt~a~~la~~~~~~~~   81 (253)
T d1sxja2          51 VFRAAMLYGPPGIGKTTAAHLVAQELGYDIL   81 (253)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHhhhh
Confidence            4467899999999999999999999987654

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.74  E-value=7.5e-06  Score=63.18  Aligned_cols=24  Identities=17%  Similarity=0.083  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      +.|.|+|+|||||||+++.|++.+
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~l   26 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPAL   26 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHH
Confidence            478899999999999999999876

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=8.5e-06  Score=63.31  Aligned_cols=24  Identities=33%  Similarity=0.470  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      +.|+|+|+||+||||+++.+++.+
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Confidence            468999999999999999999988

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.69  E-value=9.5e-06  Score=70.13  Aligned_cols=36  Identities=28%  Similarity=0.418  Sum_probs=28.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCe--echhHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPH--ISMGSLV   98 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~--is~~dll   98 (273)
                      +.-|+|.||||+|||++|+.||+.++.++  +++.++.
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~~s~~~   86 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFT   86 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGS
T ss_pred             CceEEEECCCCCCHHHHHHHHhhccccchhcccccccc
Confidence            34577899999999999999999998764  4444443

>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Hypothetical protein YorR
species: Bacillus subtilis [TaxId: 1423]

Probab=97.63  E-value=0.0048  Score=44.18  Aligned_cols=144  Identities=19%  Similarity=0.198  Sum_probs=88.2

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccCCcc
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGES  144 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~~~~  144 (273)
                      .|++.||.-+=|||++..|++++.+|.|.-..+-- .               ..|    .+-.++...+ +.     ...
T Consensus         2 liilegpdccfkstvaaklskelkypiikgssfel-a---------------ksg----neklfehfnk-la-----ded   55 (164)
T d2axpa1           2 LIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFEL-A---------------KSG----NEKLFEHFNK-LA-----DED   55 (164)
T ss_dssp             EEEEECCSSSCHHHHHHHHHHHHTCCEEECCCHHH-H---------------HHC----HHHHHHHHHH-HT-----TCC
T ss_pred             eEEEeCCchhhHHHHHHHHHhhhcCceecCchhhh-h---------------hcc----CHHHHHHHHh-hc-----ccc
Confidence            57899999999999999999999999886432211 0               011    1112222211 21     246


Q ss_pred             eEEEeCCC---------------CCHHHHHHHHh-hCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCCCCC
Q 024067          145 GFILDGIP---------------RTRIQAEILDQ-IVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAAD  208 (273)
Q Consensus       145 g~IlDg~P---------------~~~~qa~~l~~-~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~~~d  208 (273)
                      ++|+|.|.               .+..|...++. +..-..|++|.+++.++.+|+.-|+..-             -...
T Consensus        56 nviidrfvysnlvyakkfkdysilterqlrfiedkikakakvvylhadpsvikkrlrvrgdey-------------iegk  122 (164)
T d2axpa1          56 NVIIDRFVYSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGDEY-------------IEGK  122 (164)
T ss_dssp             SEEEESCHHHHHHHTTTBSSCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHTCSS-------------CCSS
T ss_pred             ceeeehhhhhhhHHHhhcccceehhHHHHHHHHHHhhhheeEEEEecChHHHHHHhccccccc-------------cccC
Confidence            78888652               24666666643 4445679999999999999997775321             1111


Q ss_pred             cHHHHHHHHHHHHHhhHHHHHHHHhcC-cEEEEeCC-CChhHHHHHHHHHH
Q 024067          209 AASAWKEKFRIYAEQGKSLEDYYSKQR-KLLNFQVA-AAPGETWQGLLSAL  257 (273)
Q Consensus       209 ~~e~~~~rl~~y~~~~~~l~~~y~~~~-~~~~id~~-~s~~ev~~~I~~~l  257 (273)
                         .+..-++.|++.+       .+.+ ..+.-|+. .+.+|+.+.|.=.+
T Consensus       123 ---didsilelyrevm-------snaglhtyswdtgqwssdeiakdiiflv  163 (164)
T d2axpa1         123 ---DIDSILELYREVM-------SNAGLHTYSWDTGQWSSDEIAKDIIFLV  163 (164)
T ss_dssp             ---HHHHHHHHHHHHH-------HTCSSCEEEEETTTSCHHHHHHHHHHHH
T ss_pred             ---CHHHHHHHHHHHH-------hcCCceeeecccCCcchHHhhhheeEee
Confidence               2334445555432       2344 24555654 58999998886443

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.61  E-value=1.3e-05  Score=72.63  Aligned_cols=32  Identities=34%  Similarity=0.491  Sum_probs=29.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      +..|+++||+|||||.+|+.||+.+++|++.+
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~   80 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKV   80 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             cccEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence            56899999999999999999999999998764

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.59  E-value=2.2e-05  Score=67.10  Aligned_cols=37  Identities=14%  Similarity=0.110  Sum_probs=30.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh--------CCCeechhHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL--------EVPHISMGSLV   98 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~--------g~~~is~~dll   98 (273)
                      +|.+|.|.|++||||||+|..|.+.+        .+..||+||++
T Consensus        26 ~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY   70 (286)
T d1odfa_          26 CPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY   70 (286)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred             CCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCCC
Confidence            57888899999999999998886554        34568999985

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.52  E-value=0.00025  Score=57.03  Aligned_cols=164  Identities=9%  Similarity=0.044  Sum_probs=87.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCe-echhHHHHHHcc---CCCh-----HHHHHHHHHHCCCCCCHH--------
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPH-ISMGSLVRQELS---PRSA-----LYKQIANAVNEGKLVPED--------  125 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~-is~~dllr~~~~---~~~~-----~g~~i~~~l~~g~~~~~~--------  125 (273)
                      +..|+|+||   ||+|+.++|.+.+.-.+ ......-|.--.   .+..     --+.+...+.+|..+...        
T Consensus         9 ~Rpivi~Gp---~K~ti~~~L~~~~p~~f~~~is~TTR~~R~~E~dG~dY~Fv~~~e~F~~~i~~~~fiE~~~~~g~~YG   85 (199)
T d1kjwa2           9 ARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYG   85 (199)
T ss_dssp             CCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCCEEEECc---CHHHHHHHHHHhCccceeecccccccCCCCCCCCCcccchhhhHHHHHHHHhhccceeeeeecCCccc
Confidence            344666776   69999999999875321 111011111000   0000     123456666666554321        


Q ss_pred             HHHHHHHHHHHhcccCCcceEEEeCCCCCHHHHHHHHhhCCCceEEEEccCHHHHHHHHhcCCcCCCcccccccCCCCCC
Q 024067          126 VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFS  205 (273)
Q Consensus       126 ~~~~ll~~~l~~~~~~~~~g~IlDg~P~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~y~~~~~~~~  205 (273)
                      +-..-+...+..     ++.+|+|.-+....+...   ....-.+||+..|.-..++|+.+|.                 
T Consensus        86 t~~~~i~~~~~~-----gk~~lldid~~g~~~lk~---~~~~~i~IfI~pps~e~l~~l~kr~-----------------  140 (199)
T d1kjwa2          86 TSVQSVREVAEQ-----GKHCILDVSANAVRRLQA---AHLHPIAIFIRPRSLENVLEINKRI-----------------  140 (199)
T ss_dssp             EEHHHHHHHHHT-----TCEEEECCCTTHHHHHHH---TTCCCEEEEECCSSHHHHHHHCTTS-----------------
T ss_pred             eeeeEEEehhcC-----CCcccccccchHHhhhhh---hccceeEEeeccccHHHHHhhhccc-----------------
Confidence            112333444444     477899987765555432   2222368888886555555665443                 


Q ss_pred             CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHHHHhcCCC
Q 024067          206 AADAASAWKEKFRIYAEQGKSLEDYYSKQRKLLNFQVAAAPGETWQGLLSALHLQHMN  263 (273)
Q Consensus       206 ~~d~~e~~~~rl~~y~~~~~~l~~~y~~~~~~~~id~~~s~~ev~~~I~~~l~~~~~~  263 (273)
                         +.+.+++++....+......++|   + . .|. +.+.++.+++|...|......
T Consensus       141 ---~~~~i~~r~~~~~~~e~~~~~~f---d-~-vI~-Nddle~a~~~l~~iI~~~~~~  189 (199)
T d1kjwa2         141 ---TEEQARKAFDRATKLEQEFTECF---S-A-IVE-GDSFEEIYHKVKRVIEDLSGP  189 (199)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHGGGC---S-E-EEC-CSSHHHHHHHHHHHHHHHSCS
T ss_pred             ---cHHHHHHHHHHHHHHHHHhhccC---C-E-EEE-CcCHHHHHHHHHHHHHHhcCC
Confidence               23466777665543322222222   2 2 233 467999999999999876543

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.48  E-value=2.8e-05  Score=65.61  Aligned_cols=32  Identities=22%  Similarity=0.360  Sum_probs=28.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      +.-|+|.||||+|||++++.||+.+|++++.+
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~   72 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANECQANFISI   72 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHhCCcEEEE
Confidence            45588999999999999999999999886654

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.46  E-value=2.2e-05  Score=64.27  Aligned_cols=27  Identities=30%  Similarity=0.263  Sum_probs=23.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEV   89 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~   89 (273)
                      ...++|.||||+||||+++.|+++++.
T Consensus        45 ~~~lll~Gp~G~GKTtla~~iak~l~~   71 (231)
T d1iqpa2          45 MPHLLFAGPPGVGKTTAALALARELFG   71 (231)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHh
Confidence            346889999999999999999998754

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.45  E-value=3.6e-05  Score=64.57  Aligned_cols=32  Identities=19%  Similarity=0.209  Sum_probs=27.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      +.-|+|.||||+|||++++.+|+.++.+++.+
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~~~~~~~~i   69 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANETGAFFFLI   69 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CceeEEecCCCCCchHHHHHHHHHhCCeEEEE
Confidence            34588999999999999999999999887664

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=97.45  E-value=4.2e-05  Score=67.50  Aligned_cols=33  Identities=18%  Similarity=0.256  Sum_probs=30.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeech
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~   94 (273)
                      ++..++|.||||+|||++|+.||+.+|.+++++
T Consensus       153 ~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~i  185 (362)
T d1svma_         153 KKRYWLFKGPIDSGKTTLAAALLELCGGKALNV  185 (362)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHHCCEEECC
T ss_pred             CcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            556899999999999999999999999998875

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.38  E-value=5.8e-05  Score=61.64  Aligned_cols=28  Identities=21%  Similarity=0.389  Sum_probs=25.1

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      |.+|..|+++||+|+||||.+.+||.++
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4577889999999999999999999877

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.35  E-value=5.5e-05  Score=58.61  Aligned_cols=25  Identities=12%  Similarity=0.153  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      |+.|.|+|++||||||+..+|..++
T Consensus         1 Mkii~I~G~~gSGKTTli~~l~~~L   25 (165)
T d1xjca_           1 MNVWQVVGYKHSGKTTLMEKWVAAA   25 (165)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3456799999999999999999877

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.31  E-value=7.4e-05  Score=61.53  Aligned_cols=27  Identities=30%  Similarity=0.368  Sum_probs=24.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      .+..++|.||||+||||+++.|++.+.
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHh
Confidence            456899999999999999999999874

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.24  E-value=0.00011  Score=59.71  Aligned_cols=27  Identities=22%  Similarity=0.353  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .++..|+++||+||||||.+.+||..+
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~   30 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYY   30 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            467889999999999999999999877

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.21  E-value=9.6e-05  Score=63.81  Aligned_cols=33  Identities=27%  Similarity=0.403  Sum_probs=27.5

Q ss_pred             CCCe-EEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067           61 RRGV-QWVLIGDPGVKKHVYADNLSKLLEVPHIS   93 (273)
Q Consensus        61 ~~~~-~Ivi~G~pGSGKsT~a~~La~~~g~~~is   93 (273)
                      .+|. .++++||||+|||.+|+.||+.++.+++.
T Consensus        49 ~~p~~~~lf~Gp~GvGKT~lak~la~~l~~~~i~   82 (315)
T d1r6bx3          49 HKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLR   82 (315)
T ss_dssp             TSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             CCCceEEEEECCCcchhHHHHHHHHhhccCCeeE
Confidence            3444 57799999999999999999999876653

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.21  E-value=5.5e-05  Score=61.55  Aligned_cols=26  Identities=23%  Similarity=0.305  Sum_probs=23.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLLEVP   90 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~g~~   90 (273)
                      .++|.||||+||||+|+.|++.++..
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~l~~~   63 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHELLGR   63 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred             eEEEECCCCCCchhhHHHHHHHHhcc
Confidence            58899999999999999999998754

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.10  E-value=0.00015  Score=59.03  Aligned_cols=24  Identities=21%  Similarity=0.426  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      +.|+|+|++||||||+..+|.+.+
T Consensus         1 ~vi~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           1 MIVVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHH
Confidence            468899999999999999998765

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.10  E-value=0.00013  Score=59.34  Aligned_cols=24  Identities=29%  Similarity=0.353  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ..++|.||||+||||+++.|++++
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHHH
Confidence            348899999999999999999985

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.09  E-value=0.00021  Score=58.15  Aligned_cols=27  Identities=22%  Similarity=0.258  Sum_probs=20.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+|..|+|+||+|+||||.+.+||.++
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~   36 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFY   36 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            357788899999999999999999877

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.06  E-value=0.00013  Score=59.79  Aligned_cols=25  Identities=20%  Similarity=0.174  Sum_probs=22.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ...++|.||||+||||+++.+++.+
T Consensus        33 ~~~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          33 LPHLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhh
Confidence            4468899999999999999999987

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.05  E-value=0.0001  Score=60.94  Aligned_cols=24  Identities=25%  Similarity=0.261  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ..++|.||||+||||+++.+++.+
T Consensus        47 ~~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          47 MIYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             eEEEeECCCCCCHHHHHHHHHHHH
Confidence            345668999999999999999986

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.00022  Score=58.01  Aligned_cols=27  Identities=19%  Similarity=0.322  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+|..|+++||+|+||||.+.+||.++
T Consensus         7 ~~p~vi~lvGptGvGKTTTiAKLA~~~   33 (211)
T d2qy9a2           7 KAPFVILMVGVNGVGKTTTIGKLARQF   33 (211)
T ss_dssp             CTTEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            357788999999999999999999877

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.03  E-value=0.00016  Score=58.66  Aligned_cols=25  Identities=20%  Similarity=0.274  Sum_probs=22.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCC
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLLEV   89 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~g~   89 (273)
                      .++|.||||+||||+++.|+++++.
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~l~~   61 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAREIYG   61 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCChhHHHHHHHHHhhc
Confidence            4789999999999999999998753

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.03  E-value=0.00031  Score=56.89  Aligned_cols=26  Identities=27%  Similarity=0.387  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+..|+|+||+|+||||.+.+||..+
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~   34 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYY   34 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            45678899999999999999999877

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.92  E-value=0.00029  Score=57.35  Aligned_cols=33  Identities=9%  Similarity=0.118  Sum_probs=27.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh-----CCCeech
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISM   94 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~   94 (273)
                      ++..++|.|+||||||++|..++...     .+.++++
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~   62 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAY   62 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeec
Confidence            67789999999999999999999886     2446654

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.84  E-value=0.00032  Score=52.86  Aligned_cols=23  Identities=13%  Similarity=0.104  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ++|+|+|+||+||||+..+|...
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            47999999999999999998753

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=96.70  E-value=0.00035  Score=60.33  Aligned_cols=33  Identities=15%  Similarity=0.199  Sum_probs=25.1

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhC--CCe--echhHHH
Q 024067           66 WVLIGDPGVKKHVYADNLSKLLE--VPH--ISMGSLV   98 (273)
Q Consensus        66 Ivi~G~pGSGKsT~a~~La~~~g--~~~--is~~dll   98 (273)
                      +++.||||+|||.+|+.||.+.+  +++  |+..+++
T Consensus       126 ~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~  162 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPL  162 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSS
T ss_pred             EEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhh
Confidence            44579999999999999999975  444  4444444

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=96.69  E-value=0.00045  Score=60.72  Aligned_cols=31  Identities=32%  Similarity=0.478  Sum_probs=26.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHIS   93 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is   93 (273)
                      +..|+++||+|+|||.+|++||+.++.+++.
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~~~~~~~ir   98 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAI   98 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred             CcceeeeCCCCccHHHHHHHHHhhcccceee
Confidence            4468899999999999999999999877654

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.69  E-value=0.00057  Score=52.74  Aligned_cols=28  Identities=25%  Similarity=0.377  Sum_probs=24.0

Q ss_pred             CCCCCCeEEEEEcCCCCChhHHHHHHHH
Q 024067           58 SPPRRGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        58 ~~~~~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      ..+.+..+|+|+|.||+||||+..+|..
T Consensus        11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          11 SAPDQEVRILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             SCCSSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHhc
Confidence            4456789999999999999999998843

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.64  E-value=0.0008  Score=52.01  Aligned_cols=29  Identities=17%  Similarity=0.216  Sum_probs=26.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~   90 (273)
                      .+..|+|.|.-||||||+++.+++.+|+.
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhhcccc
Confidence            47789999999999999999999999874

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.62  E-value=0.0007  Score=55.35  Aligned_cols=29  Identities=14%  Similarity=0.019  Sum_probs=25.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCe
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPH   91 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~   91 (273)
                      +..++|.|++|+||||+++.+++..+..+
T Consensus        29 ~~~i~i~G~~G~GKTsLl~~~~~~~~~~~   57 (283)
T d2fnaa2          29 APITLVLGLRRTGKSSIIKIGINELNLPY   57 (283)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHTCCE
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHCCCCe
Confidence            35788999999999999999999987654

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.62  E-value=0.00059  Score=59.04  Aligned_cols=27  Identities=22%  Similarity=0.455  Sum_probs=24.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+..+|.|+|+|||||||+...|.+.+
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            468899999999999999999999876

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.00061  Score=53.36  Aligned_cols=26  Identities=15%  Similarity=0.105  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++..+.|.|+|||||||+|..++...
T Consensus        22 ~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          22 TGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            67889999999999999999998764

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.0007  Score=52.41  Aligned_cols=27  Identities=26%  Similarity=0.466  Sum_probs=23.6

Q ss_pred             CCCCCeEEEEEcCCCCChhHHHHHHHH
Q 024067           59 PPRRGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        59 ~~~~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      +|.+..+|+|+|.+|+||||+..++..
T Consensus         2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           2 PPSETHKLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEEECCCCcCHHHHHHHHHh
Confidence            455678999999999999999999875

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.53  E-value=0.0006  Score=52.45  Aligned_cols=25  Identities=16%  Similarity=0.213  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .+..+|+|+|.||+||||+..+|..
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            5678999999999999999998854

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.48  E-value=0.00092  Score=50.48  Aligned_cols=26  Identities=19%  Similarity=0.213  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ++-.+|+|+|.||+||||+..++...
T Consensus         3 ~ke~kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           3 TREMRILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhCC
Confidence            35678999999999999999998653

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.45  E-value=0.001  Score=57.43  Aligned_cols=27  Identities=37%  Similarity=0.526  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+..+|-|+|+||+||||+...|.+.+
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHH
Confidence            367899999999999999999999875

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.43  E-value=0.00086  Score=51.19  Aligned_cols=24  Identities=13%  Similarity=0.270  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      |-++|+|+|+|||||||+..+|..
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcC
Confidence            347899999999999999999864

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.36  E-value=0.00086  Score=57.62  Aligned_cols=27  Identities=30%  Similarity=0.539  Sum_probs=23.4

Q ss_pred             CCCe-EEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGV-QWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~-~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+|. .++++||+|+|||.+|+.||+.+
T Consensus        50 ~kp~~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          50 NRPIGSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             SSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCcchHHHHHHHHHHHh
Confidence            4555 57788999999999999999987

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.35  E-value=0.0011  Score=50.95  Aligned_cols=24  Identities=13%  Similarity=0.135  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      +-++|+|+|.|||||||+..+|..
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhc
Confidence            457999999999999999999875

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=96.29  E-value=0.0011  Score=50.18  Aligned_cols=24  Identities=25%  Similarity=0.422  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      |++|+|+|.|++||||+..+|...
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            578999999999999999999743

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.27  E-value=0.0014  Score=52.89  Aligned_cols=34  Identities=15%  Similarity=0.104  Sum_probs=27.9

Q ss_pred             EEEEcCCCCChhHHHHHHHHHh-----CCCeechhHHHH
Q 024067           66 WVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVR   99 (273)
Q Consensus        66 Ivi~G~pGSGKsT~a~~La~~~-----g~~~is~~dllr   99 (273)
                      ++|.|++|+|||.+++.++.++     .+.+++..++..
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~   77 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQ   77 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHHH
Confidence            7899999999999999999887     345777766654

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.25  E-value=0.0011  Score=54.22  Aligned_cols=28  Identities=29%  Similarity=0.307  Sum_probs=24.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~   90 (273)
                      +..++|.||||+||||+|+.+++.++..
T Consensus        34 ~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~   61 (239)
T d1njfa_          34 HHAYLFSGTRGVGKTSIARLLAKGLNCE   61 (239)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHCT
T ss_pred             CeeEEEECCCCCcHHHHHHHHHHHhcCc
Confidence            3458899999999999999999988543

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.24  E-value=0.0013  Score=49.22  Aligned_cols=22  Identities=14%  Similarity=0.146  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChhHHHHHHHHH
Q 024067           65 QWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      +|+|+|+||+||||+..+|...
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999864

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.23  E-value=0.0013  Score=51.64  Aligned_cols=32  Identities=28%  Similarity=0.281  Sum_probs=27.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechh
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG   95 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~   95 (273)
                      +.-|+|.|++|+||||+|-.|.++ |...|+-|
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~~-g~~lv~DD   45 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQR-GHRLIADD   45 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHT-TCEEEEEE
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc-CCeEEecC
Confidence            566889999999999999999876 88888644

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.19  E-value=0.00094  Score=55.22  Aligned_cols=27  Identities=15%  Similarity=0.283  Sum_probs=24.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      ++-++.|+|++||||||+.+.|...+.
T Consensus        28 ~Ge~vaIvG~sGsGKSTLl~ll~gl~~   54 (241)
T d2pmka1          28 QGEVIGIVGRSGSGKSTLTKLIQRFYI   54 (241)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            578999999999999999999988764

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.19  E-value=0.001  Score=53.51  Aligned_cols=25  Identities=20%  Similarity=0.155  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ++..+.|.|+|||||||+|..++..
T Consensus        33 ~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          33 TGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            6788999999999999999998754

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.18  E-value=0.0015  Score=52.46  Aligned_cols=27  Identities=19%  Similarity=0.209  Sum_probs=23.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEV   89 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~   89 (273)
                      +..++|.||||+||||+|+.+|+.+..
T Consensus        24 ~h~lLl~Gp~G~GKtt~a~~~a~~l~~   50 (207)
T d1a5ta2          24 HHALLIQALPGMGDDALIYALSRYLLC   50 (207)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHhccc
Confidence            445889999999999999999998743

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.15  E-value=0.0009  Score=57.49  Aligned_cols=24  Identities=29%  Similarity=0.371  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ..++|+|+||+||||+++.|++-+
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHS
T ss_pred             CeEEEECCCCccHHHHHHHHHHhC
Confidence            468999999999999999999876

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.14  E-value=0.0016  Score=49.70  Aligned_cols=23  Identities=22%  Similarity=0.406  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .++|+|+|.||+||||+..+|..
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCcCHHHHHHHHHh
Confidence            36899999999999999998875

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.11  E-value=0.0017  Score=52.60  Aligned_cols=26  Identities=19%  Similarity=0.221  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++..++|.|+|||||||+|..++...
T Consensus        35 ~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          35 TQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            67889999999999999999998764

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.11  E-value=0.0012  Score=55.02  Aligned_cols=27  Identities=22%  Similarity=0.421  Sum_probs=24.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      ++-++.|+|++||||||+++.|+..+.
T Consensus        40 ~Ge~iaivG~sGsGKSTLl~ll~gl~~   66 (253)
T d3b60a1          40 AGKTVALVGRSGSGKSTIASLITRFYD   66 (253)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcccC
Confidence            577899999999999999999987663

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.07  E-value=0.0017  Score=53.25  Aligned_cols=26  Identities=23%  Similarity=0.303  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-.+.|+||.||||||+.+.|+..+
T Consensus        25 ~Gei~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          25 EGEFVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCC
Confidence            57789999999999999999997544

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.06  E-value=0.0013  Score=54.30  Aligned_cols=26  Identities=15%  Similarity=0.143  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-++.|+|+.||||||+.+.|+..+
T Consensus        27 ~Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          27 PNSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            67899999999999999999998766

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.0013  Score=54.60  Aligned_cols=27  Identities=30%  Similarity=0.337  Sum_probs=24.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      ++-++.|+|+.||||||+.+.|...+.
T Consensus        39 ~Ge~vaivG~sGsGKSTLl~li~gl~~   65 (251)
T d1jj7a_          39 PGEVTALVGPNGSGKSTVAALLQNLYQ   65 (251)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcccC
Confidence            578999999999999999999987663

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.01  E-value=0.002  Score=51.39  Aligned_cols=24  Identities=38%  Similarity=0.603  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ..++|+|+||+|||++++.||.+.
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHHHH
Confidence            468899999999999999999876

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.98  E-value=0.0021  Score=49.31  Aligned_cols=24  Identities=17%  Similarity=0.224  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ..+|+|+|.+|+||||+..+|...
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCcCHHHHHHHHHcC
Confidence            367999999999999999998753

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.0027  Score=51.21  Aligned_cols=26  Identities=12%  Similarity=-0.033  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .++..++|.|+||||||++|..++..
T Consensus        35 p~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          35 ESMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            47889999999999999999999864

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=95.97  E-value=0.0021  Score=50.40  Aligned_cols=22  Identities=23%  Similarity=0.353  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      ++|+|+|.|||||||+...|..
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHhcC
Confidence            4799999999999999999974

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.96  E-value=0.0017  Score=51.02  Aligned_cols=32  Identities=25%  Similarity=0.274  Sum_probs=26.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCCeechh
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG   95 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~   95 (273)
                      +.-|+|.|++|+||||++-.|.++ |...|+-|
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~~-G~~lvaDD   46 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLINK-NHLFVGDD   46 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTT-TCEEEEEE
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc-CCceecCC
Confidence            556889999999999999999875 88877644

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.94  E-value=0.0018  Score=53.11  Aligned_cols=26  Identities=19%  Similarity=0.212  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-.+.|+||.||||||+.+.|+..+
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          30 EGEFVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCcchhhHhccCCC
Confidence            67789999999999999999887544

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.92  E-value=0.0023  Score=49.89  Aligned_cols=33  Identities=27%  Similarity=0.267  Sum_probs=27.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeechh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG   95 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is~~   95 (273)
                      .+.-|+|.|++|+||||++-.|.++ |...|+-|
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~~-g~~li~DD   46 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIKR-GHRLVADD   46 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESS
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc-CCeEEeCC
Confidence            3567899999999999999998887 88777643

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=95.90  E-value=0.0018  Score=53.41  Aligned_cols=26  Identities=23%  Similarity=0.302  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-.+.|+||+||||||+.+.|+...
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          30 AGQIYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             SSCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCc
Confidence            57789999999999999999997544

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.90  E-value=0.0024  Score=49.06  Aligned_cols=22  Identities=23%  Similarity=0.481  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .+|+|+|.+|+||||+..++..
T Consensus         3 ~Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           3 LKVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHc
Confidence            5799999999999999999864

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.0021  Score=49.15  Aligned_cols=24  Identities=13%  Similarity=0.194  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      +..+|+|+|.+|+||||+..++..
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCcCHHHHHHHHHh
Confidence            567899999999999999999865

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.88  E-value=0.0024  Score=48.53  Aligned_cols=23  Identities=22%  Similarity=0.310  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      ..+|+|+|.+|+||||+..++..
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            46799999999999999999875

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.0024  Score=49.11  Aligned_cols=22  Identities=27%  Similarity=0.582  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .+|+|+|.||+||||+..++..
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHhc
Confidence            5799999999999999998864

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.0023  Score=49.80  Aligned_cols=23  Identities=22%  Similarity=0.433  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      -.+|+|+|.||+||||+..+|..
T Consensus         5 ~~Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           5 LIKLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEEEECCCCcCHHHHHHHHhc
Confidence            36899999999999999999874

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=95.86  E-value=0.0026  Score=48.49  Aligned_cols=22  Identities=14%  Similarity=0.276  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .+|+|+|++|+||||+..+|..
T Consensus         3 ~ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           3 MELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHc
Confidence            5799999999999999999865

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.85  E-value=0.0024  Score=48.67  Aligned_cols=23  Identities=30%  Similarity=0.423  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+|+++|.||+||||+..+|...
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            57999999999999999998753

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.0024  Score=48.98  Aligned_cols=24  Identities=29%  Similarity=0.396  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ..+|+|+|.+|+||||+..+|.+.
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhC
Confidence            368999999999999999999863

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.82  E-value=0.0037  Score=48.37  Aligned_cols=26  Identities=15%  Similarity=0.342  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ..+++|+|+|.+|+||||+..+|...
T Consensus         6 ~~~~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           6 TDAIKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            35789999999999999999999753

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.0027  Score=49.35  Aligned_cols=25  Identities=20%  Similarity=0.319  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      +..+|+|+|.+|+||||+..++.+.
T Consensus         4 ~~iKivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           4 QAIKCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEEECCCCCCHHHHHHHHHhC
Confidence            6789999999999999999998753

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.81  E-value=0.0028  Score=46.50  Aligned_cols=28  Identities=21%  Similarity=0.265  Sum_probs=24.9

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      +.++..|++.|.+||||+|+|..|...+
T Consensus         3 ~kqgf~i~~tg~~~~gk~~ia~al~~~l   30 (122)
T d1g8fa3           3 PKQGFSIVLGNSLTVSREQLSIALLSTF   30 (122)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred             CccceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            3568999999999999999999997776

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.0029  Score=48.80  Aligned_cols=23  Identities=35%  Similarity=0.482  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      ..+|+|+|.||+||||+..++..
T Consensus         4 ~~Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           4 LFKVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            46899999999999999999865

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=95.77  E-value=0.0026  Score=52.38  Aligned_cols=26  Identities=23%  Similarity=0.307  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-.+.|+||.||||||+.+.|+..+
T Consensus        28 ~Ge~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          28 DGEFMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCC
Confidence            46788999999999999999998655

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.77  E-value=0.0022  Score=54.08  Aligned_cols=26  Identities=19%  Similarity=0.197  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-++.|+||.||||||+.+.|+..+
T Consensus        61 ~Ge~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          61 KGEMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCCC
Confidence            57789999999999999999998766

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.003  Score=48.19  Aligned_cols=22  Identities=27%  Similarity=0.622  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .+|+|+|.||+||||+..++..
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            6899999999999999999875

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.75  E-value=0.0028  Score=52.13  Aligned_cols=26  Identities=27%  Similarity=0.314  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-.+.|+||.||||||+.+.|+..+
T Consensus        31 ~Ge~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          31 DGEFLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCC
Confidence            56789999999999999999998655

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.0028  Score=48.72  Aligned_cols=23  Identities=17%  Similarity=0.397  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      ..+|+|+|.||+||||+..++..
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            36899999999999999999864

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.0029  Score=48.24  Aligned_cols=24  Identities=21%  Similarity=0.246  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      -.+|+|+|.+|+||||+..++...
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhC
Confidence            468999999999999999998763

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.69  E-value=0.0027  Score=52.28  Aligned_cols=23  Identities=26%  Similarity=0.530  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .++|+||.||||||+.+.|+..+
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            66789999999999999998765

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.69  E-value=0.0023  Score=49.27  Aligned_cols=25  Identities=12%  Similarity=0.179  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .+.++|+|+|+||+||||+..+|..
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTC
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhc
Confidence            3568899999999999999998864

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.67  E-value=0.0022  Score=51.35  Aligned_cols=26  Identities=23%  Similarity=0.335  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-++.|+||.||||||+.+.|+..+
T Consensus        26 ~Gei~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          26 KGNVVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhccc
Confidence            57789999999999999999997654

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.65  E-value=0.0031  Score=49.55  Aligned_cols=23  Identities=13%  Similarity=0.075  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      +.|+|+|+|++||||+..+|...
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999999764

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.64  E-value=0.0032  Score=49.80  Aligned_cols=23  Identities=13%  Similarity=-0.041  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      +.|+|+|+|||||||+..+|...
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            36899999999999999999763

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.61  E-value=0.0033  Score=50.26  Aligned_cols=27  Identities=15%  Similarity=-0.055  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .++..++|.|+||+|||+++..++-..
T Consensus        32 ~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          32 ESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            367899999999999999999999765

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=95.60  E-value=0.0027  Score=49.19  Aligned_cols=24  Identities=17%  Similarity=0.297  Sum_probs=21.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLS   84 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La   84 (273)
                      .+-.+|+|+|.|||||||+..+|.
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHh
Confidence            457899999999999999998874

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.60  E-value=0.0032  Score=48.18  Aligned_cols=21  Identities=29%  Similarity=0.502  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 024067           65 QWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .|+|+|.||+||||+..+|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            588999999999999999974

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.60  E-value=0.0014  Score=54.52  Aligned_cols=27  Identities=15%  Similarity=0.350  Sum_probs=24.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      ++-++.|+|+.||||||+.+.|+..+.
T Consensus        43 ~Ge~vaivG~sGsGKSTLl~ll~gl~~   69 (255)
T d2hyda1          43 KGETVAFVGMSGGGKSTLINLIPRFYD   69 (255)
T ss_dssp             TTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhcCC
Confidence            578999999999999999999987664

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.60  E-value=0.0036  Score=48.56  Aligned_cols=22  Identities=23%  Similarity=0.514  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      ++|+|+|.+|+||||+..++..
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5799999999999999999875

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.0038  Score=47.62  Aligned_cols=23  Identities=22%  Similarity=0.251  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      ..+|+|+|.+|+||||+..++..
T Consensus         3 ~fKivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           3 SFKVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEEECCCCcCHHHHHHHHHh
Confidence            35899999999999999999875

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.56  E-value=0.0043  Score=51.88  Aligned_cols=25  Identities=28%  Similarity=0.400  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ...++|+|+||+|||++++.||.++
T Consensus        39 k~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          39 KNNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCcEEECCCCCcHHHHHHHHHHHH
Confidence            3478899999999999999999875

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=95.55  E-value=0.0023  Score=52.36  Aligned_cols=26  Identities=19%  Similarity=0.491  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-.+.|+||.||||||+.+.|+..+
T Consensus        25 ~Ge~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          25 SGEYFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            57789999999999999999998655

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=95.52  E-value=0.0023  Score=49.11  Aligned_cols=25  Identities=16%  Similarity=0.312  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      ....+|+|+|.|++||||+..+|..
T Consensus        14 ~~~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          14 DTGIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhC
Confidence            4678999999999999999998854

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.52  E-value=0.0035  Score=47.85  Aligned_cols=24  Identities=29%  Similarity=0.412  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      +..+|+|+|.+|+||||+..+|..
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHh
Confidence            346899999999999999999875

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.51  E-value=0.0041  Score=47.77  Aligned_cols=22  Identities=27%  Similarity=0.462  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .+|+|+|.||+||||+..++..
T Consensus         7 ~KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           7 FKVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            4799999999999999998865

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.51  E-value=0.0041  Score=47.55  Aligned_cols=23  Identities=22%  Similarity=0.322  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+|+|+|.+|+|||++..++...
T Consensus         3 iKi~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           3 VKLAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            57999999999999999999863

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.51  E-value=0.0039  Score=48.59  Aligned_cols=22  Identities=23%  Similarity=0.376  Sum_probs=20.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNL   83 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~L   83 (273)
                      |..+|+|+|.+||||||+..++
T Consensus         1 r~iKivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHH
T ss_pred             CeEEEEEECCCCCCHHHHHHHH
Confidence            4578999999999999999999

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.48  E-value=0.0036  Score=49.72  Aligned_cols=25  Identities=16%  Similarity=0.240  Sum_probs=21.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .++..++|.|+||+|||++|..++.
T Consensus        24 ~~G~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          24 PIGRSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            3678899999999999999987654

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.47  E-value=0.0038  Score=48.64  Aligned_cols=24  Identities=21%  Similarity=0.239  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ..+|+|+|.+|+||||+..++...
T Consensus         9 ~~Ki~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1           9 MLKCVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHhhC
Confidence            468999999999999999998753

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.46  E-value=0.0086  Score=47.53  Aligned_cols=26  Identities=12%  Similarity=0.179  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+..++|.|+||+||+|+|..|++..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i   39 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYV   39 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            57789999999999999999999865

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.45  E-value=0.0048  Score=47.19  Aligned_cols=24  Identities=21%  Similarity=0.329  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      +-.+|+|+|.||+||||+..++..
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHh
Confidence            346899999999999999999875

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.43  E-value=0.0036  Score=52.10  Aligned_cols=26  Identities=23%  Similarity=0.309  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-++.|+|+.||||||+++.|+..+
T Consensus        27 ~GEi~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          27 AGDVISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            57789999999999999999997543

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.0046  Score=47.25  Aligned_cols=23  Identities=26%  Similarity=0.443  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      ..+|+|+|.+|+||||+..++..
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            46899999999999999998865

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.42  E-value=0.0042  Score=48.74  Aligned_cols=23  Identities=30%  Similarity=0.395  Sum_probs=20.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      -.+|+|+|.+|+||||+..+|..
T Consensus         6 ~~KivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           6 LFKLLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHhh
Confidence            46899999999999999999875

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.0046  Score=47.11  Aligned_cols=24  Identities=21%  Similarity=0.292  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ..+|+|+|.+|+|||++..++...
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           3 EYKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            468999999999999999998753

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.0047  Score=47.18  Aligned_cols=22  Identities=27%  Similarity=0.398  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .+|+|+|.+|+||||+..+|..
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           7 FKLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4799999999999999999985

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.37  E-value=0.0022  Score=52.86  Aligned_cols=26  Identities=19%  Similarity=0.403  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-.+.|+||.||||||+.+.|+..+
T Consensus        30 ~Ge~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          30 NGERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            57789999999999999999998654

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.32  E-value=0.0046  Score=47.18  Aligned_cols=22  Identities=23%  Similarity=0.258  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .+|+|+|.+|+||||+..++..
T Consensus         3 ~Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           3 YRVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4789999999999999998865

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.0049  Score=46.88  Aligned_cols=22  Identities=27%  Similarity=0.394  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .+|+|+|.+|+||||+..+|..
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            5799999999999999999875

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.31  E-value=0.0053  Score=46.84  Aligned_cols=24  Identities=21%  Similarity=0.317  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ..+|+|+|.+|+||||+..++...
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhC
Confidence            468999999999999999988653

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.30  E-value=0.0018  Score=48.88  Aligned_cols=23  Identities=26%  Similarity=0.482  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ++|+|+|.|++||||+..+|...
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47999999999999999999765

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.28  E-value=0.0051  Score=47.33  Aligned_cols=23  Identities=26%  Similarity=0.170  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+|+|+|.+|+||||+..++...
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            57899999999999999998763

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.27  E-value=0.0055  Score=47.17  Aligned_cols=23  Identities=22%  Similarity=0.417  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      ..+|+|+|.+|+||||+..+|..
T Consensus         7 ~iKi~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           7 TLKILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHHh
Confidence            46899999999999999998875

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.25  E-value=0.005  Score=46.61  Aligned_cols=21  Identities=19%  Similarity=0.330  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 024067           65 QWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      +|+|+|.+|+||||+..++..
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            689999999999999999875

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.24  E-value=0.0042  Score=47.81  Aligned_cols=21  Identities=19%  Similarity=0.256  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 024067           65 QWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .|+|+|.||+||||+...|..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            488999999999999999975

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.0049  Score=47.12  Aligned_cols=22  Identities=32%  Similarity=0.499  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .+|+|+|.+|+||||+..++..
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCcCHHHHHHHHhC
Confidence            3689999999999999998864

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=95.18  E-value=0.0061  Score=46.57  Aligned_cols=22  Identities=18%  Similarity=0.292  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .+|+|+|.+|+||||+..++..
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            5899999999999999999865

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=95.07  E-value=0.0051  Score=50.52  Aligned_cols=26  Identities=31%  Similarity=0.423  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-++.|+||.||||||+.+.|+..+
T Consensus        31 ~Gei~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          31 RGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            57789999999999999999997655

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.02  E-value=0.0065  Score=49.13  Aligned_cols=24  Identities=17%  Similarity=0.077  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      +.++|+|..||||||+.++|.+..
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhcC
Confidence            578899999999999999998764

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.00  E-value=0.0065  Score=46.72  Aligned_cols=23  Identities=26%  Similarity=0.368  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ..|+|+|.||+||||+..+|...
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            47999999999999999999754

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.97  E-value=0.0067  Score=46.54  Aligned_cols=22  Identities=36%  Similarity=0.516  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .+|+|+|.+|+||||+..++..
T Consensus         4 ~Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           4 YRVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5799999999999999998864

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.95  E-value=0.0061  Score=47.58  Aligned_cols=24  Identities=21%  Similarity=0.289  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ..+|+|+|.+|+||||+..++.+.
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhC
Confidence            468999999999999999988753

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.94  E-value=0.0044  Score=47.56  Aligned_cols=24  Identities=33%  Similarity=0.375  Sum_probs=11.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      ...+|+|+|.+|+||||+..+|..
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           5 YLFKLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEEEEECCCCC-----------
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHh
Confidence            456899999999999999998864

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=94.91  E-value=0.0049  Score=52.89  Aligned_cols=110  Identities=12%  Similarity=0.112  Sum_probs=55.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhC--CCeechhHHHHHHccCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccC
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLE--VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g--~~~is~~dllr~~~~~~~~~g~~i~~~l~~g~~~~~~~~~~ll~~~l~~~~~~  141 (273)
                      ..|+|+|++||||||+.+.|.....  ...+.+.|-.+-.+......    .. +..+..+   ....++...+..    
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i~~~~rivtiEd~~El~l~~~~~~----~~-~~~~~~~---~~~~ll~~~lR~----  234 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNY----TQ-LFFGGNI---TSADCLKSCLRM----  234 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCSSCSSE----EE-EECBTTB---CHHHHHHHHTTS----
T ss_pred             CCEEEEeeccccchHHHHHHhhhcccccceeeccchhhhhccccccc----ce-eccccch---hHHHHHHHHhcc----
Confidence            4589999999999999999998773  34444433221111111000    00 0111111   233445444443    


Q ss_pred             CcceEEEeCCCCCHHHHHHHHhh--CCCceEEEEccC-HHHHHHHHhc
Q 024067          142 GESGFILDGIPRTRIQAEILDQI--VDVDLVINFKSI-EDQLVKRNLE  186 (273)
Q Consensus       142 ~~~g~IlDg~P~~~~qa~~l~~~--~~~d~vI~L~~~-~e~l~~Rl~~  186 (273)
                       .-.+|+=|--|+.+-...++..  +....+.-++++ ....++|+..
T Consensus       235 -~pd~iivgEiR~~ea~~~l~a~~tGh~g~~tT~Ha~s~~~a~~Rl~~  281 (323)
T d1g6oa_         235 -RPDRIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLAN  281 (323)
T ss_dssp             -CCSEEEESCCCSTHHHHHHHHHHTTCSCEEEEECCSSHHHHHHHHHH
T ss_pred             -CCCcccCCccCchhHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHH
Confidence             2334444544555444444432  344445555553 4667777754

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.90  E-value=0.0083  Score=49.45  Aligned_cols=26  Identities=12%  Similarity=0.193  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-.++|.|+||+||||++..++-.+
T Consensus        34 ~G~l~vi~G~~G~GKT~~~~~la~~~   59 (277)
T d1cr2a_          34 GGEVIMVTSGSGMGKSTFVRQQALQW   59 (277)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHhh
Confidence            57789999999999999998888543

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=94.85  E-value=0.0081  Score=52.24  Aligned_cols=22  Identities=27%  Similarity=0.297  Sum_probs=17.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLS   84 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La   84 (273)
                      ....+|.||||+||||+...+.
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~l  184 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKLL  184 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHHH
Confidence            4578899999999998876543

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.79  E-value=0.0068  Score=50.18  Aligned_cols=26  Identities=23%  Similarity=0.397  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ++-++.|+||.||||||+.+.|+..+
T Consensus        29 ~Gei~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          29 KGDVTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHCCC
Confidence            57788999999999999999997655

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.77  E-value=0.0068  Score=50.32  Aligned_cols=15  Identities=13%  Similarity=0.219  Sum_probs=12.6

Q ss_pred             EEEEcCCCCChhHHH
Q 024067           66 WVLIGDPGVKKHVYA   80 (273)
Q Consensus        66 Ivi~G~pGSGKsT~a   80 (273)
                      ++|.|+|||||||++
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            567899999999764

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=94.77  E-value=0.0083  Score=47.87  Aligned_cols=32  Identities=16%  Similarity=0.210  Sum_probs=27.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCCeec
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS   93 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~~is   93 (273)
                      +.-.|+|.|||++|||++|..|.+.++...++
T Consensus        52 Kkn~i~~~GP~~TGKS~f~~sl~~~l~G~vis   83 (205)
T d1tuea_          52 KKNCLVFCGPANTGKSYFGMSFIHFIQGAVIS   83 (205)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred             CceEEEEECCCCccHHHHHHHHHHHhCCEEEe
Confidence            45689999999999999999999999765555

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.75  E-value=0.01  Score=49.38  Aligned_cols=25  Identities=24%  Similarity=0.163  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ...|+|.|+.|.||||+|+.+.++.
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~~   68 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSKS   68 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhh
Confidence            4578899999999999999998763

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.72  E-value=0.009  Score=46.19  Aligned_cols=23  Identities=22%  Similarity=0.290  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+|+|+|.+|+|||++..++...
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            57899999999999999988763

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=94.59  E-value=0.007  Score=49.33  Aligned_cols=25  Identities=20%  Similarity=0.329  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      +|-.+.|+||.||||||+.+.|+..
T Consensus        24 ~Gei~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          24 AGEILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             TTCEEECBCCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            5778999999999999999999763

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.55  E-value=0.0091  Score=45.53  Aligned_cols=21  Identities=24%  Similarity=0.379  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 024067           65 QWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .|+|+|.|++||||+..+|..
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            588999999999999999975

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=94.48  E-value=0.012  Score=46.17  Aligned_cols=24  Identities=21%  Similarity=0.225  Sum_probs=21.9

Q ss_pred             eEEEEEcC-CCCChhHHHHHHHHHh
Q 024067           64 VQWVLIGD-PGVKKHVYADNLSKLL   87 (273)
Q Consensus        64 ~~Ivi~G~-pGSGKsT~a~~La~~~   87 (273)
                      ++++|+|- +|+||||++-.||..+
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aL   26 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAA   26 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHH
Confidence            68999999 5999999999999887

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.46  E-value=0.0063  Score=46.61  Aligned_cols=22  Identities=27%  Similarity=0.480  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .+|+|+|.+|+||||+..++..
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4799999999999999988754

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=94.39  E-value=0.0074  Score=46.58  Aligned_cols=21  Identities=29%  Similarity=0.298  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 024067           65 QWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .|.|+|+|++||||+..+|..
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEE
T ss_pred             eEEEECCCCCCHHHHHHHHhC
Confidence            588999999999999999854

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=94.39  E-value=0.01  Score=48.62  Aligned_cols=26  Identities=31%  Similarity=0.395  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+-.+.|+||.||||||+.+.|+..+
T Consensus        27 ~Gei~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          27 EGEIFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            46788899999999999999998665

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.34  E-value=0.013  Score=44.60  Aligned_cols=22  Identities=27%  Similarity=0.424  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .+|+++|.+|+||||+..++..
T Consensus         5 ~Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           5 YKLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            6899999999999999999875

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=94.33  E-value=0.011  Score=49.56  Aligned_cols=15  Identities=13%  Similarity=0.233  Sum_probs=12.7

Q ss_pred             EEEEcCCCCChhHHH
Q 024067           66 WVLIGDPGVKKHVYA   80 (273)
Q Consensus        66 Ivi~G~pGSGKsT~a   80 (273)
                      ++|.|+|||||||++
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            667899999999765

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.32  E-value=0.01  Score=48.91  Aligned_cols=25  Identities=16%  Similarity=0.290  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ..+.|+|+|.||+||||+...|..+
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCC
Confidence            4689999999999999999999654

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.17  E-value=0.015  Score=44.77  Aligned_cols=24  Identities=13%  Similarity=0.129  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      -.+|+++|.+|+||||+..++...
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHHS
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhC
Confidence            378999999999999999988653

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=94.14  E-value=0.025  Score=41.28  Aligned_cols=29  Identities=10%  Similarity=-0.188  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~~   90 (273)
                      .-...+|.+|.|||||+++-.+..+.|..
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~~~~~~~   35 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAYAAQGYK   35 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHHHTTTCC
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHcCCc
Confidence            44567889999999999998777766643

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.06  E-value=0.015  Score=47.51  Aligned_cols=25  Identities=24%  Similarity=0.290  Sum_probs=21.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      +...+|.|+||+||||++..||...
T Consensus        29 g~~~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          29 GTVGALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4577899999999999999998764

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.01  E-value=0.015  Score=47.17  Aligned_cols=25  Identities=20%  Similarity=0.238  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ++...+|+|++|+||||+...|...
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcch
Confidence            3678899999999999999988543

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.00  E-value=0.0093  Score=45.81  Aligned_cols=21  Identities=19%  Similarity=0.321  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 024067           65 QWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .|.|+|.|++||||+..+|..
T Consensus         3 ~VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            378999999999999999854

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.98  E-value=0.016  Score=44.69  Aligned_cols=25  Identities=12%  Similarity=0.300  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      -.+|+|+|..|+||||+..++....
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~   26 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIH   26 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCC
Confidence            4689999999999999999997653

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.91  E-value=0.016  Score=46.46  Aligned_cols=24  Identities=17%  Similarity=0.227  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      -.+|+|+|.+||||||+.+++...
T Consensus         6 ~~KilllG~~~vGKTsll~~~~~~   29 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMRIL   29 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcC
Confidence            458999999999999999998644

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=93.83  E-value=0.019  Score=47.54  Aligned_cols=27  Identities=11%  Similarity=-0.012  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ..+....|.|+|||||||+|-.++...
T Consensus        52 ~~g~itei~G~~gsGKTtl~l~~~~~~   78 (263)
T d1u94a1          52 PMGRIVEIYGPESSGKTTLTLQVIAAA   78 (263)
T ss_dssp             ETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCceEEEEecCCCcHHHHHHHHHHHHH
Confidence            367788899999999999999998876

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.73  E-value=0.015  Score=51.06  Aligned_cols=24  Identities=38%  Similarity=0.603  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      -.++|+|+||+|||+++..||.+.
T Consensus        44 ~n~llvG~~GvGKtaiv~~la~~i   67 (387)
T d1qvra2          44 NNPVLIGEPGVGKTAIVEGLAQRI   67 (387)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCeEECCCCCCHHHHHHHHHHHH
Confidence            346788999999999999999875

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=93.64  E-value=0.021  Score=50.22  Aligned_cols=26  Identities=15%  Similarity=-0.010  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      .-.|+|+||.||||||....+....+
T Consensus       158 ~GliLvtGpTGSGKSTTl~~~l~~~~  183 (401)
T d1p9ra_         158 HGIILVTGPTGSGKSTTLYAGLQELN  183 (401)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hceEEEEcCCCCCccHHHHHHhhhhc
Confidence            34688999999999999888888763

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=93.62  E-value=0.015  Score=44.77  Aligned_cols=24  Identities=13%  Similarity=0.239  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      +...|.|+|.|.+||||+..+|.+
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHH
Confidence            456899999999999999999974

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=93.57  E-value=0.024  Score=46.62  Aligned_cols=35  Identities=17%  Similarity=0.044  Sum_probs=27.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh---CC--Ceechh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EV--PHISMG   95 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~---g~--~~is~~   95 (273)
                      ..|..|++.|.=|+||||++..||..+   |.  -.||+|
T Consensus         6 ~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~D   45 (296)
T d1ihua1           6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD   45 (296)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            356788999999999999998888877   43  345654

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.27  E-value=0.027  Score=43.11  Aligned_cols=24  Identities=17%  Similarity=0.293  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      -.+|+|+|..|+||||+..++...
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhC
Confidence            468999999999999999998654

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.18  E-value=0.03  Score=44.95  Aligned_cols=26  Identities=15%  Similarity=0.135  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      |.+.|.|+|-|.+||||+...|....
T Consensus         4 r~p~IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           4 RSPIVSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCccHHHHHHHHHhhc
Confidence            45569999999999999999997653

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=93.11  E-value=0.032  Score=46.24  Aligned_cols=28  Identities=14%  Similarity=0.163  Sum_probs=24.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLLEV   89 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~g~   89 (273)
                      +-..++|.|||++|||+++..|++.+|.
T Consensus       103 k~n~~~l~G~~~tGKS~f~~~i~~~lg~  130 (267)
T d1u0ja_         103 KRNTIWLFGPATTGKTNIAEAIAHTVPF  130 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             ccEEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence            4567889999999999999999999864

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=92.98  E-value=0.023  Score=40.90  Aligned_cols=20  Identities=30%  Similarity=0.205  Sum_probs=17.0

Q ss_pred             CCeEEEEEcCCCCChhHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYAD   81 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~   81 (273)
                      ++...+|.+|+|||||.++-
T Consensus         6 ~~~~~il~~~tGsGKT~~~~   25 (140)
T d1yksa1           6 KGMTTVLDFHPGAGKTRRFL   25 (140)
T ss_dssp             TTCEEEECCCTTSSTTTTHH
T ss_pred             cCCcEEEEcCCCCChhHHHH
Confidence            56788999999999997764

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.70  E-value=0.03  Score=45.77  Aligned_cols=23  Identities=35%  Similarity=0.472  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      -|+|.|++|+||+++|+.|....
T Consensus        25 pvlI~Ge~GtGK~~~A~~ih~~s   47 (247)
T d1ny5a2          25 PVLITGESGVGKEVVARLIHKLS   47 (247)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CEEEECCCCcCHHHHHHHHHHhc
Confidence            36788999999999999998654

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=92.59  E-value=0.047  Score=44.63  Aligned_cols=36  Identities=22%  Similarity=0.205  Sum_probs=27.5

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHh---C--CCeechh
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMG   95 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~~~---g--~~~is~~   95 (273)
                      +....+|++.|.=|+||||++-.||..+   |  +..|+.|
T Consensus        17 ~~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~D   57 (279)
T d1ihua2          17 RNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD   57 (279)
T ss_dssp             TTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence            3456788899999999999988888776   3  4455654

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=91.95  E-value=0.015  Score=47.34  Aligned_cols=25  Identities=24%  Similarity=0.296  Sum_probs=20.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ++...+|+|++|+||||+...|...
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred             ccceEEEECCCCccHHHHHHhhccH
Confidence            3567789999999999999998644

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.84  E-value=0.043  Score=48.08  Aligned_cols=24  Identities=17%  Similarity=0.325  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .+..|+|+|.||+||||+...|..
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            468999999999999999999963

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.73  E-value=0.052  Score=42.85  Aligned_cols=26  Identities=19%  Similarity=0.112  Sum_probs=22.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      ...|+++|-+++||||++.+|....|
T Consensus         3 ~ini~iiGhvd~GKSTL~~~Ll~~~g   28 (204)
T d2c78a3           3 HVNVGTIGHVDHGKTTLTAALTYVAA   28 (204)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCcHHHHHHHHHHHhh
Confidence            36799999999999999999976544

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.49  E-value=0.08  Score=38.96  Aligned_cols=26  Identities=19%  Similarity=0.080  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ||..-+|+||+.|||||-.-+.+..+
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~~~~~   26 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRRVRRF   26 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEEecccCHHHHHHHHHHHHH
Confidence            46677899999999999877777766

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=91.44  E-value=0.053  Score=45.42  Aligned_cols=27  Identities=19%  Similarity=0.413  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      .+|-++.|+|++|+||||++..+++..
T Consensus        41 grGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          41 GRGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             BTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             cCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            478899999999999999999999844

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.32  E-value=0.07  Score=44.20  Aligned_cols=34  Identities=18%  Similarity=0.070  Sum_probs=26.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh---C--CCeech
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISM   94 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~---g--~~~is~   94 (273)
                      .++....|.|+|||||||+|..++...   |  +.||++
T Consensus        58 ~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDt   96 (269)
T d1mo6a1          58 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDA   96 (269)
T ss_dssp             CSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred             ccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEEC
Confidence            467888899999999999998888755   2  345555

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=90.84  E-value=0.073  Score=44.02  Aligned_cols=34  Identities=18%  Similarity=0.076  Sum_probs=27.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh---C--CCeechh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMG   95 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~---g--~~~is~~   95 (273)
                      ++...-|.|+|||||||+|..++...   |  +.||++.
T Consensus        56 ~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE   94 (268)
T d1xp8a1          56 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE   94 (268)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECC
Confidence            67788899999999999999988765   2  4566653

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=90.78  E-value=0.12  Score=38.44  Aligned_cols=27  Identities=15%  Similarity=-0.069  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ..|..=+|+||+.|||||-.-+.+.++
T Consensus         5 ~~G~l~lI~GpMfSGKTteLi~~~~~~   31 (141)
T d1xx6a1           5 DHGWVEVIVGPMYSGKSEELIRRIRRA   31 (141)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cceeEEEEEeccccHHHHHHHHHHHHh
Confidence            467788899999999999888888776

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=90.58  E-value=0.061  Score=46.81  Aligned_cols=24  Identities=21%  Similarity=0.239  Sum_probs=19.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ..+++|+|++|||||+..+.|...
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHHHH
Confidence            457899999999999987765543

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.84  E-value=0.063  Score=41.77  Aligned_cols=30  Identities=20%  Similarity=0.075  Sum_probs=23.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhC-CCeech
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLLE-VPHISM   94 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~g-~~~is~   94 (273)
                      .|+|+|+.+||||..|+.|+...+ +.||-+
T Consensus         1 iiLVtGGarSGKS~~AE~l~~~~~~~~YiAT   31 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALIGDAPQVLYIAT   31 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCSCSSEEEEEC
T ss_pred             CEEEECCCCccHHHHHHHHHhcCCCcEEEEc
Confidence            378999999999999999986653 334544

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=89.84  E-value=0.1  Score=43.51  Aligned_cols=26  Identities=23%  Similarity=0.466  Sum_probs=22.8

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHH
Q 024067           60 PRRGVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        60 ~~~~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      +..+++|-|+|.|.+||||+-..|..
T Consensus         7 ~~~~~kiGivG~Pn~GKSTlfnalT~   32 (296)
T d1ni3a1           7 PGNNLKTGIVGMPNVGKSTFFRAITK   32 (296)
T ss_dssp             SSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHC
Confidence            34678999999999999999999975

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=89.73  E-value=0.11  Score=42.78  Aligned_cols=26  Identities=31%  Similarity=0.487  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .++..|.|+|.|.+||||+...|..+
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~  135 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKK  135 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCceEEEEEecCccchhhhhhhhhcc
Confidence            46789999999999999999999764

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.71  E-value=0.12  Score=40.50  Aligned_cols=24  Identities=25%  Similarity=0.266  Sum_probs=19.3

Q ss_pred             eEEEE-EcCCCCChhHHHHHHHHHh
Q 024067           64 VQWVL-IGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        64 ~~Ivi-~G~pGSGKsT~a~~La~~~   87 (273)
                      +.|.| .|..|+||||++..||..+
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~~l   26 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGVAL   26 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCChHHHHHHHHHHHH
Confidence            34444 5899999999999888877

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=89.37  E-value=0.019  Score=43.73  Aligned_cols=23  Identities=22%  Similarity=0.180  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      ..+|+|+-||||||+...|.--+
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            55689999999999999998655

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.15  E-value=0.087  Score=43.39  Aligned_cols=24  Identities=17%  Similarity=0.232  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhC
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      .-+|+|+-||||||+-..|+=-+|
T Consensus        26 lnvlvG~NgsGKS~iL~Ai~~~lg   49 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAIKWVFG   49 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHHHHTSC
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhC
Confidence            557999999999999988864443

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=88.97  E-value=0.13  Score=42.35  Aligned_cols=23  Identities=30%  Similarity=0.494  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      +++|-|+|.|.+||||+-..|..
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~   24 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTK   24 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHC
Confidence            57899999999999999999985

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=88.21  E-value=0.16  Score=41.11  Aligned_cols=33  Identities=21%  Similarity=0.235  Sum_probs=26.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh---C--CCeechh
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMG   95 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~---g--~~~is~~   95 (273)
                      ++.|.|.|.=|+||||++-.||..+   |  +-.||.|
T Consensus         1 mr~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D   38 (269)
T d1cp2a_           1 MRQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCD   38 (269)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             CCEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            4678899999999999999988877   3  3456654

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.12  E-value=0.16  Score=40.89  Aligned_cols=22  Identities=14%  Similarity=0.107  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      ..++|+||.++||||+.+.++-
T Consensus        42 ~~~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          42 RMLIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEeccCchhhHHHHHHHHH
Confidence            5688999999999999998765

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=87.90  E-value=0.16  Score=38.90  Aligned_cols=21  Identities=14%  Similarity=0.256  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 024067           65 QWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      ..++++|.|||||.++..++.
T Consensus        25 n~lv~~pTGsGKT~i~~~~~~   45 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLIAMMIAE   45 (200)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEeCCCCcHHHHHHHHHH
Confidence            356889999999998777765

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=87.76  E-value=0.21  Score=39.14  Aligned_cols=25  Identities=32%  Similarity=0.401  Sum_probs=20.6

Q ss_pred             CeEEEEE-cCCCCChhHHHHHHHHHh
Q 024067           63 GVQWVLI-GDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        63 ~~~Ivi~-G~pGSGKsT~a~~La~~~   87 (273)
                      ++.|.|. +.-|+||||++..||..+
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~l   27 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVAL   27 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHH
Confidence            4566666 778999999999998877

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=87.72  E-value=0.23  Score=36.67  Aligned_cols=25  Identities=16%  Similarity=-0.116  Sum_probs=19.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      |..=+++||+.|||||-.-+.++++
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~~   26 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHRL   26 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEEccccCHHHHHHHHHHHHH
Confidence            4556789999999999666666655

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.68  E-value=0.23  Score=38.77  Aligned_cols=26  Identities=19%  Similarity=0.112  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLLEVP   90 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~g~~   90 (273)
                      ..+|.+|+|+|||.++-.++.+++.+
T Consensus        87 ~~ll~~~tG~GKT~~a~~~~~~~~~~  112 (206)
T d2fz4a1          87 RGCIVLPTGSGKTHVAMAAINELSTP  112 (206)
T ss_dssp             EEEEEESSSTTHHHHHHHHHHHSCSC
T ss_pred             CcEEEeCCCCCceehHHhHHHHhcCc
Confidence            45678899999999999999888654

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=87.40  E-value=0.18  Score=39.32  Aligned_cols=23  Identities=22%  Similarity=0.238  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      ..|+++|=+.+||||++.+|...
T Consensus         4 ini~iiGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           4 VNVGTIGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHH
Confidence            67999999999999999998654

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.23  E-value=0.18  Score=41.71  Aligned_cols=26  Identities=31%  Similarity=0.367  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~~   87 (273)
                      +|-++.|+|++|+|||+++..++...
T Consensus        67 kGQr~~If~~~g~GKt~l~~~i~~~~   92 (276)
T d2jdid3          67 KGGKIGLFGGAGVGKTVLIMELINNV   92 (276)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEeeCCCCCCHHHHHHHHHHHH
Confidence            57789999999999999999998653

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=87.04  E-value=0.23  Score=41.04  Aligned_cols=27  Identities=4%  Similarity=-0.149  Sum_probs=23.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEV   89 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~   89 (273)
                      -..|.|+|..||||||++..|...-|.
T Consensus         6 iRni~i~gh~~~GKTtL~e~ll~~~g~   32 (276)
T d2bv3a2           6 LRNIGIAAHIDAGKTTTTERILYYTGR   32 (276)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHTS
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcCc
Confidence            347999999999999999999877664

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=86.88  E-value=0.24  Score=40.74  Aligned_cols=26  Identities=19%  Similarity=0.207  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067           64 VQWVLIGDPGVKKHVYADNLSKLLEV   89 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~~~g~   89 (273)
                      ..|.|+|..|+||||++..|.-.-|.
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~   28 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGA   28 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCC
Confidence            35899999999999999999765554

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.76  E-value=0.15  Score=43.53  Aligned_cols=24  Identities=29%  Similarity=0.282  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhC
Q 024067           65 QWVLIGDPGVKKHVYADNLSKLLE   88 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~~~g   88 (273)
                      .-+|+|+-||||||+...|+=-+|
T Consensus        27 l~~i~G~NGsGKS~ileAi~~~lg   50 (427)
T d1w1wa_          27 FTSIIGPNGSGKSNMMDAISFVLG   50 (427)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            456889999999999999964344

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=86.01  E-value=0.22  Score=39.85  Aligned_cols=21  Identities=10%  Similarity=0.086  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 024067           65 QWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        65 ~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .++|+||..+||||+.+.++-
T Consensus        37 ~~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCccccchhhhhhHH
Confidence            578999999999999997764

>d1e4va2 g.41.2.1 (A:122-156) Microbial and mitochondrial ADK, insert "zinc finger" domain {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Escherichia coli [TaxId: 562]

Probab=85.98  E-value=0.09  Score=29.42  Aligned_cols=22  Identities=5%  Similarity=-0.019  Sum_probs=18.1

Q ss_pred             cCCcCCCcccccccCCCCCCCC
Q 024067          186 ESEAFSPHKEFLRLGGARFSAA  207 (273)
Q Consensus       186 ~R~~~~~~~~~y~~~~~~~~~~  207 (273)
                      +|+.|+.||+.||..+.|++.+
T Consensus         1 GRr~c~~cG~~Yh~~~~PPk~~   22 (35)
T d1e4va2           1 GRRVHAPSGRVYHVKFNPPKVE   22 (35)
T ss_dssp             TEEEETTTTEEEETTTBCCSST
T ss_pred             CccCCcCcCChhhhccCccccC
Confidence            4678899999999998887654

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=85.72  E-value=0.32  Score=37.74  Aligned_cols=23  Identities=13%  Similarity=0.177  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      ...|.|+|-..+||||+..+|..
T Consensus         8 ~ini~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3           8 EVNIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHS
T ss_pred             CeEEEEEEccCCcHHHHHHHHHh
Confidence            36899999999999999999964

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=85.50  E-value=0.27  Score=40.17  Aligned_cols=33  Identities=21%  Similarity=0.203  Sum_probs=24.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh---CC--Ceechh
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLL---EV--PHISMG   95 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~---g~--~~is~~   95 (273)
                      +.+|+|.|.=|+||||++-.||..+   |.  -.||.|
T Consensus         2 Mr~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~D   39 (289)
T d2afhe1           2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCD   39 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecC
Confidence            5678889999999999888887765   44  345554

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=85.15  E-value=0.34  Score=38.46  Aligned_cols=27  Identities=11%  Similarity=0.097  Sum_probs=23.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEV   89 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~   89 (273)
                      ..+|+++|=..+||||++.+|....|.
T Consensus         9 ~~~i~viGHVd~GKSTL~~~Ll~~~g~   35 (222)
T d1zunb3           9 MLRFLTCGNVDDGKSTLIGRLLHDSKM   35 (222)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             cceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            457899999999999999999877664

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=84.51  E-value=0.24  Score=41.25  Aligned_cols=22  Identities=18%  Similarity=0.376  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 024067           64 VQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      +.|.|+|.|.+||||+-..|..
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~   22 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATL   22 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC
T ss_pred             CcEeEECCCCCCHHHHHHHHHC
Confidence            4789999999999999999954

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.37  E-value=0.12  Score=40.00  Aligned_cols=18  Identities=17%  Similarity=0.159  Sum_probs=15.2

Q ss_pred             eEEEEEcCCCCChhHHHH
Q 024067           64 VQWVLIGDPGVKKHVYAD   81 (273)
Q Consensus        64 ~~Ivi~G~pGSGKsT~a~   81 (273)
                      ..+++.+|+|||||+++.
T Consensus        41 ~~~il~apTGsGKT~~a~   58 (202)
T d2p6ra3          41 KNLLLAMPTAAGKTLLAE   58 (202)
T ss_dssp             SCEEEECSSHHHHHHHHH
T ss_pred             CCEEEEcCCCCchhHHHH
Confidence            457899999999998764

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=83.79  E-value=0.33  Score=37.28  Aligned_cols=23  Identities=17%  Similarity=0.211  Sum_probs=20.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      -..|.++|-+.+||||+..+|..
T Consensus         5 ~inIaiiGhvd~GKSTL~~~L~g   27 (195)
T d1kk1a3           5 EVNIGMVGHVDHGKTTLTKALTG   27 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHT
T ss_pred             cEEEEEEeccCCcHHHHHHHHHh
Confidence            35789999999999999999964

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=82.98  E-value=0.48  Score=38.02  Aligned_cols=26  Identities=23%  Similarity=0.208  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        61 ~~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+++..+|.|..|||||-++-..+..
T Consensus        74 ~~~~~~LL~GdvGsGKT~V~~~a~~~   99 (233)
T d2eyqa3          74 PLAMDRLVCGDVGFGKTEVAMRAAFL   99 (233)
T ss_dssp             SSCCEEEEECCCCTTTHHHHHHHHHH
T ss_pred             cCccCeEEEcCCCCCcHHHHHHHHHH
Confidence            46788889999999999998877654

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.69  E-value=0.25  Score=39.23  Aligned_cols=25  Identities=20%  Similarity=0.278  Sum_probs=19.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 024067           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (273)
Q Consensus        62 ~~~~Ivi~G~pGSGKsT~a~~La~~   86 (273)
                      .+.-+++++|.|||||+++...+..
T Consensus        57 ~g~~~~i~apTGsGKT~~~~~~~~~   81 (237)
T d1gkub1          57 RKESFAATAPTGVGKTSFGLAMSLF   81 (237)
T ss_dssp             TTCCEECCCCBTSCSHHHHHHHHHH
T ss_pred             CCCCEEEEecCCChHHHHHHHHHHH
Confidence            4667889999999999887665543

>d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK, insert "zinc finger" domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.67  E-value=0.18  Score=28.63  Aligned_cols=21  Identities=0%  Similarity=-0.374  Sum_probs=17.4

Q ss_pred             cCCcCCCcccccccCCCCCCC
Q 024067          186 ESEAFSPHKEFLRLGGARFSA  206 (273)
Q Consensus       186 ~R~~~~~~~~~y~~~~~~~~~  206 (273)
                      +|+.|+.||+.||..+.|++.
T Consensus         1 GRr~C~~cG~~Yh~~~~ppk~   21 (38)
T d1akya2           1 GRLIHPASGRSYHKIFNPPKE   21 (38)
T ss_dssp             TEEECTTTCCEEETTTBCCSS
T ss_pred             CccCCcCccchhhhhccCcCc
Confidence            467889999999998887754

>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=82.47  E-value=0.16  Score=28.73  Aligned_cols=21  Identities=0%  Similarity=-0.239  Sum_probs=17.4

Q ss_pred             CCcCCCcccccccCCCCCCCC
Q 024067          187 SEAFSPHKEFLRLGGARFSAA  207 (273)
Q Consensus       187 R~~~~~~~~~y~~~~~~~~~~  207 (273)
                      |++|+.||+.||..+.|++.+
T Consensus         2 R~vc~~cG~~Yh~~~~pPk~~   22 (37)
T d2ak3a2           2 RWIHPGSGRVYNIEFNPPKTM   22 (37)
T ss_dssp             EEEETTTTEEEETTTBCCSST
T ss_pred             ceeeCCcCChhhhccCCcccc
Confidence            677899999999998887643

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=82.16  E-value=0.35  Score=39.83  Aligned_cols=23  Identities=22%  Similarity=0.221  Sum_probs=20.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSK   85 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~   85 (273)
                      .+.|+|+|...|||||+...|..
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG   46 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVG   46 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHT
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhC
Confidence            45789999999999999999963

>d1zina2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=81.68  E-value=0.18  Score=28.10  Aligned_cols=22  Identities=5%  Similarity=-0.262  Sum_probs=17.8

Q ss_pred             cCCcCCCcccccccCCCCCCCC
Q 024067          186 ESEAFSPHKEFLRLGGARFSAA  207 (273)
Q Consensus       186 ~R~~~~~~~~~y~~~~~~~~~~  207 (273)
                      +|+.|+.||+.||..+.|++.+
T Consensus         1 GRr~C~~CG~~Yh~~~~pPk~~   22 (35)
T d1zina2           1 GRRICRNCGATYHLIFHPPAKP   22 (35)
T ss_dssp             TEEEETTTCCEEETTTBCCSST
T ss_pred             CccCCcCcCchhccccCCCCCC
Confidence            4677889999999988887643

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.78  E-value=0.61  Score=37.37  Aligned_cols=28  Identities=18%  Similarity=0.062  Sum_probs=24.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 024067           63 GVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~~La~~~g~~   90 (273)
                      .+.|+++|=..+||||++.+|.-..|..
T Consensus         6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~i   33 (239)
T d1f60a3           6 HINVVVIGHVDSGKSTTTGHLIYKCGGI   33 (239)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSCS
T ss_pred             ccEEEEEeCCCCCHHHHHHHHHHHcCCc
Confidence            3689999999999999999998777753

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=80.57  E-value=0.44  Score=39.97  Aligned_cols=19  Identities=26%  Similarity=0.309  Sum_probs=15.5

Q ss_pred             CeEEEEEcCCCCChhHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYAD   81 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~   81 (273)
                      +-.-+++|.+|+||||++.
T Consensus        14 ~~~alfFGLSGTGKTTLs~   32 (313)
T d2olra1          14 GDVAVFFGLSGTGKTTLST   32 (313)
T ss_dssp             SCEEEEECSTTSSHHHHHC
T ss_pred             CCEEEEEccCCCCccccee
Confidence            4455799999999999774

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=80.05  E-value=0.27  Score=41.44  Aligned_cols=19  Identities=26%  Similarity=0.309  Sum_probs=15.6

Q ss_pred             CeEEEEEcCCCCChhHHHH
Q 024067           63 GVQWVLIGDPGVKKHVYAD   81 (273)
Q Consensus        63 ~~~Ivi~G~pGSGKsT~a~   81 (273)
                      +-.-+++|.+|+||||++.
T Consensus        14 ~~valffGLSGTGKTTLs~   32 (318)
T d1j3ba1          14 GDVAVFFGLSGTGKTTLST   32 (318)
T ss_dssp             CCEEEEEECTTSCHHHHTC
T ss_pred             CCEEEEEccCCCCcccccc
Confidence            4456899999999999764