Citrus Sinensis ID: 024078


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270---
MLMGHADGLSELRSSKDHLLSDHELEVEEYTDDDDEEAANSSEEILYAASFEELASNSVKYDTIIWFSISLLLVLAWGVGVFMLLYLPIRRYVLKKDISSRKLYVTPSEIVYKVSRPSFIPFWGKTTNERHVPLSLVIDVIIEQGCLQSIYGIHTFRVESIARGKAAPVDELQVQGVDNPVLLRKVIVTEAAKVIQNSSKNWKVNAFTGEVESMSRMASLTEGTAVLRSPSKSWKVKKIVRFSFLFQELVQGINQLKYLSVPLSQCNGQKLTK
cccccccccccccccccccccccHHHHcccccccHHHHHcccccHHHHccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEcccEEEEEEccccccccccccccEEEEcccccEEEEEEccHHHHccccEEEEEEEEccccccccccEEEEEccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccc
cccccccccccHHHcccccccccccccccccccccHHHcccccEEEEEccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccEEEEcccEEEEEEccccccccccEEEEEEccccHHHHHHHEEcccHHHEEEEEEEEEEEcccccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHccccccccccEEccccccccccccHHHHHHHHHHHHcHHccEEEEEccHHcccccccc
mlmghadglselrsskdhllsdheleveeytddddeeaanSSEEILYAASFEELasnsvkydTIIWFSISLLLVLAWGVGVFMLLYLPIRRYVLKKdissrklyvtpseivykvsrpsfipfwgkttnerhvpLSLVIDVIIEQGCLQSIYGIHTFrvesiargkaapvdelqvqgvdnpvLLRKVIVTEAAKVIQNSSKNWKVNAFTGEVESMSRMAsltegtavlrspskswkvkKIVRFSFLFQELVQGINQLKylsvplsqcngqkltk
mlmghadglselrsskdhllSDHELEVEEYTDDDDEEAANSSEEILYAASFEELASNSVKYDTIIWFSISLLLVLAWGVGVFMLLYLPIRRYVLkkdissrklyvtpseivykvsrpsfiPFWGKTTNERHVPLSLVIDVIIEQGCLQSIYGIHTFRVESIARGkaapvdelqvqgvdnpvLLRKVIVTEAAKviqnssknwkvNAFTGEVESMSRMASLTegtavlrspskswkVKKIVRFSFLFQELVQGINQLKylsvplsqcngqkltk
MLMGHADGLSELRSSKDHLLSDHeleveeytddddeeaansseeILYAASFEELASNSVKYDTIIWFSISLLLVLAWGVGVFMLLYLPIRRYVLKKDISSRKLYVTPSEIVYKVSRPSFIPFWGKTTNERHVPLSLVIDVIIEQGCLQSIYGIHTFRVESIARGKAAPVDELQVQGVDNPVLLRKVIVTEAAKVIQNSSKNWKVNAFTGEVESMSRMASLTEGTAVLRSPSKSWKVKKIVRFSFLFQELVQGINQLKYLSVPLSQCNGQKLTK
********************************************ILYAASFEELASNSVKYDTIIWFSISLLLVLAWGVGVFMLLYLPIRRYVLKKDISSRKLYVTPSEIVYKVSRPSFIPFWGKTTNERHVPLSLVIDVIIEQGCLQSIYGIHTFRVESIARGKAAPVDELQVQGVDNPVLLRKVIVTEAAKVIQNSSKNWKVNAFTGEV**************VL****KSWKVKKIVRFSFLFQELVQGINQLKYLSVPLS*********
***************************************NSSEEILYAASFEELASNSVKYDTIIWFSISLLLVLAWGVGVFMLLYLPIRRYVLKKDISSRKLYVTPSEIVYKVSRPSFIPFWGKTTNERHVPLSLVIDVIIEQGCLQSIYGIHTFRVESI*******VDELQVQGVDNPVLLRKVIVTEA*****************************************************LFQELVQGINQLKYLSV************
MLMGHADGLSELRSSKDHLLSDHELEV************NSSEEILYAASFEELASNSVKYDTIIWFSISLLLVLAWGVGVFMLLYLPIRRYVLKKDISSRKLYVTPSEIVYKVSRPSFIPFWGKTTNERHVPLSLVIDVIIEQGCLQSIYGIHTFRVESIARGKAAPVDELQVQGVDNPVLLRKVIVTEAAKVIQNSSKNWKVNAFTGEVESMSRMASLTEGTAVLRSPSKSWKVKKIVRFSFLFQELVQGINQLKYLSVPLSQCNGQKLTK
**************************************ANSSEEILYAASFEELASNSVKYDTIIWFSISLLLVLAWGVGVFMLLYLPIRRYVLKKDISSRKLYVTPSEIVYKVSRPSFIPFWGKTTNERHVPLSLVIDVIIEQGCLQSIYGIHTFRVESIARGKAAPVDELQVQGVDNPVLLRKVIVTEAAKVIQNSSKNW**************************SPSKSWKVKKIVRFSFLFQELVQGINQLKYLSVPLSQCNG*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MLMGHADGLSELRSSKDHLLSDHELEVEEYTDDDDEEAANSSEEILYAASFEELASNSVKYDTIIWFSISLLLVLAWGVGVFMLLYLPIRRYVLKKDISSRKLYVTPSEIVYKVSRPSFIPFWGKTTNERHVPLSLVIDVIIEQGCLQSIYGIHTFRVESIARGKAAPVDELQVQGVDNPVLLRKVIVTEAAKVIQNSSKNWKVNAFTGEVESMSRMASLTEGTAVLRSPSKSWKVKKIVRFSFLFQELVQGINQLKYLSVPLSQCNGQKLTK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query273
225454081277 PREDICTED: uncharacterized protein LOC10 0.860 0.848 0.694 3e-89
147854599239 hypothetical protein VITISV_018377 [Viti 0.835 0.953 0.710 4e-89
255541502282 conserved hypothetical protein [Ricinus 0.882 0.854 0.685 1e-88
388494350276 unknown [Lotus japonicus] 0.904 0.894 0.660 2e-87
449454476286 PREDICTED: uncharacterized protein LOC10 0.886 0.846 0.645 2e-86
356530098276 PREDICTED: uncharacterized protein LOC10 0.842 0.833 0.669 3e-84
356568344276 PREDICTED: uncharacterized protein LOC10 0.904 0.894 0.620 5e-82
224063993284 predicted protein [Populus trichocarpa] 0.842 0.809 0.648 6e-80
357507177273 hypothetical protein MTR_7g076600 [Medic 0.923 0.923 0.567 4e-78
224127566271 predicted protein [Populus trichocarpa] 0.904 0.911 0.610 4e-77
>gi|225454081|ref|XP_002271354.1| PREDICTED: uncharacterized protein LOC100248297 [Vitis vinifera] gi|297745206|emb|CBI40286.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  334 bits (856), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 168/242 (69%), Positives = 194/242 (80%), Gaps = 7/242 (2%)

Query: 3   MGHADGLSELRSSKDHLLSDHELEVEEYTDDDDEEAANSSEEILYAASFEELASNSVKYD 62
           M   +GL  L SSKD LLSD E EV      D++E A++SE+ILY ASF+ELA N+++YD
Sbjct: 1   MSRTEGLPGLGSSKDPLLSDPESEV------DEDEEADTSEQILYTASFDELAENNLQYD 54

Query: 63  TIIWFSISLLLVLAWGVGVFMLLYLPIRRYVLKKDISSRKLYVTPSEIVYKVSRPSFIPF 122
           TIIW SISLLLVLAWGVG+ MLLYLP +RYVL+KDISSRKL+VTP++IVYKVSRPS+IPF
Sbjct: 55  TIIWMSISLLLVLAWGVGIIMLLYLPFKRYVLQKDISSRKLHVTPTQIVYKVSRPSYIPF 114

Query: 123 WGKTTNERHVPLSLVIDVIIEQGCLQSIYGIHTFRVESIARGKAAPVDELQVQGVDNPVL 182
           WG  T E+ VPLSLVID+IIEQGCLQS+YGIHT R+ESIA GKAAPVDEL VQGV NP L
Sbjct: 115 WGDVTVEKQVPLSLVIDIIIEQGCLQSVYGIHTLRIESIAHGKAAPVDELLVQGVSNPGL 174

Query: 183 LRKVIVTEAAKVIQNSSKNWKVNAFTGEVESMSRMASLTEGTAV-LRSPSKSWKVKKIVR 241
           LRKVI+TEAAKV+Q    NWK  A TGE ES+ RM SLTEG AV LRSPSKS K+    R
Sbjct: 175 LRKVIITEAAKVLQEVGTNWKPPALTGEGESVVRMTSLTEGPAVLLRSPSKSLKITGSPR 234

Query: 242 FS 243
            +
Sbjct: 235 HT 236




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147854599|emb|CAN80696.1| hypothetical protein VITISV_018377 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255541502|ref|XP_002511815.1| conserved hypothetical protein [Ricinus communis] gi|223548995|gb|EEF50484.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|388494350|gb|AFK35241.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|449454476|ref|XP_004144980.1| PREDICTED: uncharacterized protein LOC101221776 [Cucumis sativus] gi|449507665|ref|XP_004163096.1| PREDICTED: uncharacterized protein LOC101228358 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356530098|ref|XP_003533621.1| PREDICTED: uncharacterized protein LOC100791214 [Glycine max] Back     alignment and taxonomy information
>gi|356568344|ref|XP_003552371.1| PREDICTED: uncharacterized protein LOC100794759 [Glycine max] Back     alignment and taxonomy information
>gi|224063993|ref|XP_002301338.1| predicted protein [Populus trichocarpa] gi|222843064|gb|EEE80611.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357507177|ref|XP_003623877.1| hypothetical protein MTR_7g076600 [Medicago truncatula] gi|355498892|gb|AES80095.1| hypothetical protein MTR_7g076600 [Medicago truncatula] Back     alignment and taxonomy information
>gi|224127566|ref|XP_002320106.1| predicted protein [Populus trichocarpa] gi|222860879|gb|EEE98421.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

No hits with e-value below 0.001 by BLAST


Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 273
PF0370380 bPH_2: Bacterial PH domain; InterPro: IPR005182 A 98.73
COG3402161 Uncharacterized conserved protein [Function unknow 98.29
COG3428 494 Predicted membrane protein [Function unknown] 97.61
COG3428494 Predicted membrane protein [Function unknown] 97.07
>PF03703 bPH_2: Bacterial PH domain; InterPro: IPR005182 A domain that is found in uncharacterised family of membrane proteins Back     alignment and domain information
Probab=98.73  E-value=1.4e-08  Score=72.47  Aligned_cols=77  Identities=16%  Similarity=0.289  Sum_probs=61.4

Q ss_pred             cceeEEecCceEEeecCCccccccccccccceecCcchheeeeehhhhhhhhceeEEEEEeeecCCCCCCCceeEeeccC
Q 024078          100 SRKLYVTPSEIVYKVSRPSFIPFWGKTTNERHVPLSLVIDVIIEQGCLQSIYGIHTFRVESIARGKAAPVDELQVQGVDN  179 (273)
Q Consensus       100 srkL~vT~~~ivYKvsRp~~fp~~Gv~r~Ek~VPL~~ItDviieQG~LqslfGl~~lrvEtaGqs~~~~~d~vql~GV~n  179 (273)
                      +.+..+|++.++.  .+|.+.      +++..+|+++|.+|-+.|||+|+.||+.++.|+++|.++..  -.+...++.+
T Consensus         3 ~~~y~i~~~~l~i--~~G~~~------~~~~~i~~~~Iq~v~~~q~~~~r~~g~~~i~i~~~~~~~~~--~~i~~~~~~~   72 (80)
T PF03703_consen    3 NTGYTITDDRLII--RSGLFS------KRTTIIPLDRIQSVSIKQNPLQRLFGLGTIKIDTAGGSGEK--IEIPFLSIED   72 (80)
T ss_pred             EEEEEEECCEEEE--EECeEE------EEEEEEEhhHeEEEEEEcCHHHHhCccEEEEEEECCCCCce--eEEecCCHHH
Confidence            3446677666553  236664      99999999999999999999999999999999999988754  3677777777


Q ss_pred             hhhHHHH
Q 024078          180 PVLLRKV  186 (273)
Q Consensus       180 p~~FRk~  186 (273)
                      |.++++.
T Consensus        73 a~~i~~~   79 (80)
T PF03703_consen   73 AEEIYDW   79 (80)
T ss_pred             HHHHHhh
Confidence            7777654



1-3 copies found in each protein, with each copy flanked by transmembrane helices.

>COG3402 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG3428 Predicted membrane protein [Function unknown] Back     alignment and domain information
>COG3428 Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00