Citrus Sinensis ID: 024079

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270---
Protein Sequence
MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAERQIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSNVLCTHSLYVSLSEFLHLTS
Secondary Structure (PSIPRED)
cccccEEEcccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHccccccccccccccEEEEEccEEEEcc
Secondary Structure Prediction (SSPRO)
cccEEEEEccccccccccEEEEEEcccccccccccccEEEccccccccHHHHHHcccccccccccccccccccccccccccEEccccccccccccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHcccccccccccEEEEEcccEEEEEc
Coil and Loop (DISEMBL)
MGLASVIysgvqaphkfdslllrfsptstsqvpkltsllhfcnsqaptfysvshnrrgqyspllacakgteqeddlstsevgrsssqshendntshspttvddaerqiegresytsSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFklfaseeddtdlsdnfiVKTCqrfipvtsnvlCTHSLYVSLSEFLHLTS
Flexible Loop (DISEMBL)
MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQYSPLLACAKGTEQEDDLSTSEVgrsssqshendntshspttvddaerqIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSNVLCTHSLYVslseflhlts
Low Complexity Region (SEG)
MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAERQIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSNVLCTHSLYVSLSEFLHLTS
Disordered region (IsUnstruct)
*****VIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQYSPLLAC**************************************************SVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSNVLCTHSLYVSLSEFLH***
Disordered Region (DISOPRED)
***ASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSH***************TEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAERQIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFA***********FIVKTCQRFIPVTSNVLCTHSLYVSLSEFLHLTS
Disordered Region (DISEMBL)
MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQYSPLLACAK************************************ERQIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSNVLCTHSLYVSLSEFLHLTS
Disordered Region (DISPRO)
*GLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQYSPLLACAKG*************************SHSPTTVDD***QIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSNVLCTHSLYVSLSEFLHLTS
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAERQIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSNVLCTHSLYVSLSEFLHLTS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	273	2.2.26 [Sep-21-2011]
P96554	319	Uncharacterized membrane	yes	no	0.487	0.416	0.390	6e-22
Q52356	346	Tellurium resistance prot	N/A	no	0.520	0.410	0.380	1e-18
Q92GA4	301	Uncharacterized membrane	yes	no	0.523	0.475	0.328	2e-17
P60067	320	Inner membrane protein al	yes	no	0.549	0.468	0.322	3e-17
Q8ZLX2	322	Inner membrane protein al	yes	no	0.428	0.363	0.367	3e-17
Q8Z3L5	322	Inner membrane protein al	N/A	no	0.428	0.363	0.367	4e-17
P42601	321	Inner membrane protein al	N/A	no	0.413	0.352	0.353	5e-17
Q8XAJ0	321	Inner membrane protein al	N/A	no	0.413	0.352	0.353	6e-17
Q8FDE1	321	Inner membrane protein al	yes	no	0.413	0.352	0.353	6e-17
P18780	346	Tellurium resistance prot	N/A	no	0.560	0.442	0.353	6e-17

>sp|P96554|Y319_MYXXA Uncharacterized membrane protein STKORF319 OS=Myxococcus xanthus PE=3 SV=1

 Score =  104 bits (260), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 52/133 (39%), Positives = 77/133 (57%)

Query: 122 AFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNR 181
           A  VS A+ FG GV +  G     +F  GY++E+SLSVDN+FVFV+IF   ++P +YQ+R
Sbjct: 48  ALWVSLALVFGAGVWWKFGPEPGLQFITGYLIEKSLSVDNIFVFVVIFSALRIPALYQHR 107

Query: 182 VLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFI 241
           VL +GI  A+  R  +I  G A L RF  +  V  G L+ +  KLF     + +  +  +
Sbjct: 108 VLFWGILSALALRAIMIFAGVAMLARFHWLIYVFGGFLIITGVKLFLQRNKEDNPEEGAL 167

Query: 242 VKTCQRFIPVTSN 254
           ++  +R IP T N
Sbjct: 168 MRLARRTIPSTPN 180

Myxococcus xanthus (taxid: 34)

>sp|Q52356|TERC_SERMA Tellurium resistance protein TerC OS=Serratia marcescens GN=terC PE=3 SV=1

 Score = 94.0 bits (232), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 87/155 (56%), Gaps = 13/155 (8%)

Query: 111 RESYTSSVKTVA----FCVSTAVAFGLGVGFI---EGASKASEFFAGYILEQSLSVDNLF 163
           R+    S+K+ A    F V  A+AF    GF+    GA  AS F  GY LE+ LSVDNLF
Sbjct: 32  RDDKPISLKSAALWSVFWVVVAMAFA---GFLYIHHGAEVASLFVTGYALEKVLSVDNLF 88

Query: 164 VFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSS 223
           V + IF +F VP  Y++RVL +GI GAIVFR   + +GT+ L     V +V A I+ +++
Sbjct: 89  VMMAIFSWFAVPDRYRHRVLYWGIIGAIVFRGIFVAIGTSLLSLGPYVEVVFAIIVAWTA 148

Query: 224 FKLFASEEDDTDLSD---NFIVKTCQRFIPVTSNV 255
             +  S +DD ++ D   +   +  +RF P+   +
Sbjct: 149 VMMLKSGDDDDEIEDYSQHLAYRMVKRFFPIWPKL 183

Could conceivably alter the intracellular level of tellurium in a manner leading to resistance. Alternatively its presence in the membrane may provide a barrier to entry of the tellurium ions.

Serratia marcescens (taxid: 615)

>sp|Q92GA4|Y1219_RICCN Uncharacterized membrane protein RC1219 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=RC1219 PE=3 SV=1

 Score = 89.7 bits (221), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 84/143 (58%)

Query: 113 SYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYF 172
           S+  SV    F +  A  FG+ V +  GA  A E++  +++E+++S+DN+FV  +IF++F
Sbjct: 29  SFKESVLFSLFYLVIACLFGIYVYYNTGADHAREYYTCFLIEKAMSLDNIFVISIIFQFF 88

Query: 173 KVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEED 232
           K+P  YQ+RVL +GI G I+FR  +I  G   + +F  +  + A IL+ +  K F     
Sbjct: 89  KIPWQYQHRVLFFGIIGVIIFRAVMIYGGIILINKFAWLLYIFAVILIATGIKTFYVSHK 148

Query: 233 DTDLSDNFIVKTCQRFIPVTSNV 255
             D+ +++I K+  + + +T N+
Sbjct: 149 TFDIQNSYIYKSIIKNLNITPNL 171

Rickettsia conorii (strain ATCC VR-613 / Malish 7) (taxid: 272944)

>sp|P60067|ALX_PHOLL Inner membrane protein alx OS=Photorhabdus luminescens subsp. laumondii (strain TT01) GN=alx PE=3 SV=1

 Score = 89.4 bits (220), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 83/158 (52%), Gaps = 8/158 (5%)

Query: 106 RQIEGRESYTSSVKTVAFCVSTAVAFGLG--------VGFIEGASKASEFFAGYILEQSL 157
           R+ E   S+  +       VS ++ F LG        VG     S+   F  GY+LE++L
Sbjct: 30  RKKEQAMSFRQAAVWSVIWVSLSLLFALGLWWYCRETVGVAVANSQVMAFLTGYLLEKAL 89

Query: 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAG 217
           +VDN+FV++++F YF +P   Q RVL YG+ GAIV R  +I  G+  + +F  +  +   
Sbjct: 90  AVDNVFVWLMLFSYFAIPANLQRRVLIYGVLGAIVLRTVMIFAGSWLVSQFSWILYLFGL 149

Query: 218 ILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSNV 255
            LL +  K+   +EDD+ + D   V+  +  I +T N+
Sbjct: 150 FLLVTGVKMALVKEDDSPIGDKPFVRWLKAHIRITDNL 187

Photorhabdus luminescens subsp. laumondii (strain TT01) (taxid: 243265)

>sp|Q8ZLX2|ALX_SALTY Inner membrane protein alx OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=alx PE=3 SV=1

 Score = 89.0 bits (219), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 72/117 (61%)

Query: 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 202
           +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  GT
Sbjct: 75  QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPPALQRRVLVYGVLGAIVLRTIMIFAGT 134

Query: 203 ATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSNVLCTH 259
             + +FE +  V    LLF+  K+  ++ED++ + +  +V+  +  + +T  +   H
Sbjct: 135 WLITQFEWLLYVFGAFLLFTGVKMALAKEDESGIGEKPMVRWLRGHLRMTDTIENEH 191

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

>sp|Q8Z3L5|ALX_SALTI Inner membrane protein alx OS=Salmonella typhi GN=alx PE=3 SV=1

 Score = 89.0 bits (219), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 72/117 (61%)

Query: 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 202
           +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  GT
Sbjct: 75  QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPPALQRRVLVYGVLGAIVLRTIMIFAGT 134

Query: 203 ATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSNVLCTH 259
             + +FE +  V    LLF+  K+  ++ED++ + +  +V+  +  + +T  +   H
Sbjct: 135 WLITQFEWLLYVFGAFLLFTGVKMALAKEDESGIGEKPMVRWLRGHLRMTDTIENEH 191

Salmonella typhi (taxid: 90370)

>sp|P42601|ALX_ECOLI Inner membrane protein alx OS=Escherichia coli (strain K12) GN=alx PE=1 SV=2

 Score = 88.2 bits (217), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 70/113 (61%)

Query: 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 202
           +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  G+
Sbjct: 75  QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVLGAIVLRTIMIFTGS 134

Query: 203 ATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSNV 255
             + +F+ +  +    LLF+  K+  + ED++ + D  +V+  +  + +T  +
Sbjct: 135 WLISQFDWILYIFGAFLLFTGVKMALAHEDESGIGDKPLVRWLRGHLRMTDTI 187

Escherichia coli (strain K12) (taxid: 83333)

>sp|Q8XAJ0|ALX_ECO57 Inner membrane protein alx OS=Escherichia coli O157:H7 GN=alx PE=3 SV=1

 Score = 88.2 bits (217), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 70/113 (61%)

Query: 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 202
           +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  G+
Sbjct: 75  QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVLGAIVLRTIMIFTGS 134

Query: 203 ATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSNV 255
             + +F+ +  +    LLF+  K+  + ED++ + D  +V+  +  + +T  +
Sbjct: 135 WLISQFDWILYIFGAFLLFTGVKMALAHEDESGIGDKPLVRWLRGHLRMTDTI 187

Escherichia coli O157:H7 (taxid: 83334)

>sp|Q8FDE1|ALX_ECOL6 Inner membrane protein alx OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=alx PE=3 SV=1

 Score = 88.2 bits (217), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 70/113 (61%)

Query: 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 202
           +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  G+
Sbjct: 75  QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVLGAIVLRTIMIFTGS 134

Query: 203 ATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSNV 255
             + +F+ +  +    LLF+  K+  + ED++ + D  +V+  +  + +T  +
Sbjct: 135 WLISQFDWILYIFGAFLLFTGVKMALAHEDESGIGDKPLVRWLRGHLRMTDTI 187

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

>sp|P18780|TERC_ALCSP Tellurium resistance protein TerC OS=Alcaligenes sp. GN=terC PE=3 SV=1

 Score = 88.2 bits (217), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 87/167 (52%), Gaps = 14/167 (8%)

Query: 111 RESYTSSVKTVA----FCVSTAVAFGLGVGFI---EGASKASEFFAGYILEQSLSVDNLF 163
           R     S+K+ A    F V  A+AF    GF+    GA  AS F  GY LE+ LSVDNLF
Sbjct: 32  RHDKPISLKSAALWSVFWVVVAMAFA---GFLYVHHGAEVASLFVTGYALEKVLSVDNLF 88

Query: 164 VFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSS 223
           V + IF +F VP  Y++R L +GI GAIVFR   + +GT  L     V L+ A ++ +++
Sbjct: 89  VMMAIFSWFSVPDRYRHRGLYWGIIGAIVFRGIFVAIGTGLLSLGPYVELIFAVVVAWTA 148

Query: 224 FKLFASEEDDTDLSD---NFIVKTCQRFIPVTSNVLCTHSLYVSLSE 267
             +     DD ++ D   +   +  +RF P+    L  H+  ++  E
Sbjct: 149 VMMLKGGGDDDEIEDYSQHLAYRLVKRFFPIWPK-LSGHAFLLTQKE 194

Could conceivably alter the intracellular level of tellurium in a manner leading to resistance. Alternatively its presence in the membrane may provide a barrier to entry of the tellurium ions.

Alcaligenes sp (taxid: 512)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	273
224068600	372	predicted protein [Populus trichocarpa]	0.879	0.645	0.653	1e-83
255568464	327	Protein alx, putative [Ricinus communis]	0.809	0.675	0.605	2e-71
356536907	363	PREDICTED: uncharacterized membrane prot	0.849	0.639	0.602	4e-69
225439789	389	PREDICTED: uncharacterized membrane prot	0.860	0.604	0.576	1e-68
388522347	261	unknown [Medicago truncatula]	0.842	0.881	0.586	6e-68
449448697	362	PREDICTED: uncharacterized membrane prot	0.816	0.616	0.561	7e-68
297807259	374	PDE149 [Arabidopsis lyrata subsp. lyrata	0.882	0.644	0.601	3e-67
18416778	384	TerC integral membrane domain-containing	0.901	0.640	0.570	6e-66
21592518	384	transmembrane transport protein-like pro	0.901	0.640	0.570	7e-66
356548192	352	PREDICTED: uncharacterized membrane prot	0.809	0.627	0.582	3e-65

>gi|224068600|ref|XP_002326155.1| predicted protein [Populus trichocarpa] gi|222833348|gb|EEE71825.1| predicted protein [Populus trichocarpa]

 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 168/257 (65%), Positives = 199/257 (77%), Gaps = 17/257 (6%)

Query: 1   MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQY 60
           M L SVI++    P     L L+ SP +       T  + F +   P+F SV   RRGQ 
Sbjct: 1   MRLTSVIHNNSIIP-----LSLKVSPAN------YTYSVQFSHPHFPSFNSVISKRRGQN 49

Query: 61  SPLLACAKGTEQEDDLSTSEVGRSSSQSHENDN---TSHSPTTVDDAERQIEGRESYTSS 117
           SP+ +CA+GTEQEDDLS SE  ++SSQ+ ++ +   TS +P +VD AE +++G  +Y +S
Sbjct: 50  SPI-SCARGTEQEDDLSPSEAVKTSSQTRDDVSKFITSTAPPSVDKAEEKVKG--NYKTS 106

Query: 118 VKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVM 177
           +KTVA CV TAVAFG G+G  +G  KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVP+M
Sbjct: 107 IKTVALCVCTAVAFGFGIGLKDGVGKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPLM 166

Query: 178 YQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLS 237
           YQNRVLSYGIAGAI+FRLSLILLGTATLQRFEAVNL LA ILL+SSFKLFA+EEDD+DLS
Sbjct: 167 YQNRVLSYGIAGAIIFRLSLILLGTATLQRFEAVNLFLATILLYSSFKLFATEEDDSDLS 226

Query: 238 DNFIVKTCQRFIPVTSN 254
           DNFIVKTCQRFIPVTSN
Sbjct: 227 DNFIVKTCQRFIPVTSN 243

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568464|ref|XP_002525206.1| Protein alx, putative [Ricinus communis] gi|223535503|gb|EEF37172.1| Protein alx, putative [Ricinus communis]

 Score =  275 bits (702), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 155/256 (60%), Positives = 181/256 (70%), Gaps = 35/256 (13%)

Query: 1   MGLASVIYS--GVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRG 58
           M LASVI++   +Q P    SL LR SP      PK +   HF         S+ H  R 
Sbjct: 1   MSLASVIHTINTIQPPL---SLTLRVSP------PKCSPRFHFSPPHFTPLLSLPH--RL 49

Query: 59  QYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAERQIEGRESYTSSV 118
            Y   +AC+ G +Q+ DLSTSE                +P +VD    + E   +YT+SV
Sbjct: 50  PYP--IACSGGAQQDPDLSTSE----------------APHSVD----KPEAHGNYTTSV 87

Query: 119 KTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMY 178
           KTVAFCV  AVAFG+G+GF +G  KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVP+MY
Sbjct: 88  KTVAFCVCAAVAFGIGIGFKDGVGKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPLMY 147

Query: 179 QNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSD 238
           QNRVLSYGIAGAI+FRLSLILLG+ATLQRFEAVNL LA ILL+SS KLFASE+D+TDLSD
Sbjct: 148 QNRVLSYGIAGAIIFRLSLILLGSATLQRFEAVNLFLAAILLYSSVKLFASEDDETDLSD 207

Query: 239 NFIVKTCQRFIPVTSN 254
           NFIVKTCQ++IP+TS 
Sbjct: 208 NFIVKTCQKYIPITSK 223

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536907|ref|XP_003536974.1| PREDICTED: uncharacterized membrane protein STKORF319-like [Glycine max]

 Score =  267 bits (682), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 153/254 (60%), Positives = 183/254 (72%), Gaps = 22/254 (8%)

Query: 1   MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQY 60
           MGLASV+++GV+ P   + +    +P      P   S LH   S   +F SV H R    
Sbjct: 1   MGLASVVHNGVRIPFNLEHI---HTP------PFRCSALHHPIS---SFCSVYHYRPPHR 48

Query: 61  SPLLACAKGTEQEDDLSTSEVGRSSSQSHEN-DNTSHSPTTVDDAERQIEGRESYTSSVK 119
            PLL C++     +    SEV R S+Q +++      SPT      ++  G E Y+SSV+
Sbjct: 49  FPLL-CSRRIGHHN--YASEVKRISAQQNDDIGKVEKSPT------QESLGNEDYSSSVR 99

Query: 120 TVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQ 179
           TVA  V TAVAFG+G+GF EG  KASEFFAGYILEQSLSVDNLFVFVLIF YFKVPV YQ
Sbjct: 100 TVALWVCTAVAFGVGLGFKEGFDKASEFFAGYILEQSLSVDNLFVFVLIFNYFKVPVAYQ 159

Query: 180 NRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDN 239
           NRVLSYGIAGA+VFRL+LIL+GTATLQRFEAVNL+LA ILLFSSFKLFASEED++DLSDN
Sbjct: 160 NRVLSYGIAGAVVFRLTLILIGTATLQRFEAVNLLLAAILLFSSFKLFASEEDESDLSDN 219

Query: 240 FIVKTCQRFIPVTS 253
           F+VKTCQ+FIPVT+
Sbjct: 220 FVVKTCQKFIPVTT 233

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439789|ref|XP_002276398.1| PREDICTED: uncharacterized membrane protein STKORF319-like [Vitis vinifera]

 Score =  265 bits (678), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 154/267 (57%), Positives = 184/267 (68%), Gaps = 32/267 (11%)

Query: 7   IYSGVQAPHKFDSLLLRFSPTSTS------QVPKLTSLL----------HFCNSQAPTFY 50
           IY GV+ P KFDS       TSTS      Q  K T+            HF     P   
Sbjct: 7   IYYGVRTPLKFDS-------TSTSTRVFSFQALKWTTTRSTTRLRFTFPHF-----PPLS 54

Query: 51  SVSHNRRGQYSPLLACAKGTEQ-EDDLSTSEVGRSSSQSHENDNTS--HSPTTVDDAERQ 107
           +V +    + SPL AC++ T+Q ED LSTSE  R S+      N +  H+  +  + E  
Sbjct: 55  AVRNAGGARCSPL-ACSRRTQQGEDGLSTSEGERISAPYDGLSNVAVPHNCISAGNPEEI 113

Query: 108 IEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVL 167
            +G E+Y SS++TVA  V  AV FG+GVGF +G  KASEFFAGY+LEQSLSVDNLFVFVL
Sbjct: 114 TQGPETYVSSIRTVALWVCMAVIFGVGVGFKDGVGKASEFFAGYLLEQSLSVDNLFVFVL 173

Query: 168 IFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLF 227
           IFKYF+VP MYQ RVLSYGIAGAI+FRLSLILLGTATLQRFEAVNL+ A ILLFSSFKLF
Sbjct: 174 IFKYFQVPTMYQGRVLSYGIAGAIIFRLSLILLGTATLQRFEAVNLLFAAILLFSSFKLF 233

Query: 228 ASEEDDTDLSDNFIVKTCQRFIPVTSN 254
           A++ED+TDLS+NF+VKTCQ+FIPVT+N
Sbjct: 234 AADEDETDLSNNFVVKTCQKFIPVTAN 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522347|gb|AFK49235.1| unknown [Medicago truncatula]

 Score =  263 bits (672), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 149/254 (58%), Positives = 178/254 (70%), Gaps = 24/254 (9%)

Query: 1   MGLASVIYSGVQAP-HKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQ 59
           M LASV+++G+Q P +  D + +R S + TS        L F +    +F SV H  R  
Sbjct: 1   MSLASVVHNGIQTPLNHTDLIRIRASHSKTST-------LQFLHRPISSFSSVYHLHRPL 53

Query: 60  YSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAERQIEGRESYTSSVK 119
             PL  C+K   Q     TS+V R ++Q              DD     E  ES +S+V+
Sbjct: 54  RLPL-PCSKPIRQVHPFHTSDVKRITAQR-------------DDEISSTE--ESQSSAVR 97

Query: 120 TVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQ 179
           TVA  V  AVAFG+GVGF EG  KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPV+YQ
Sbjct: 98  TVALWVCAAVAFGVGVGFTEGYEKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVLYQ 157

Query: 180 NRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDN 239
           NRVLSYGIAGA+VFRL +ILLGTAT+QRFEAVNL+LA ILLFSSFKLFASEE+++DLSDN
Sbjct: 158 NRVLSYGIAGAVVFRLIIILLGTATIQRFEAVNLLLAAILLFSSFKLFASEEEESDLSDN 217

Query: 240 FIVKTCQRFIPVTS 253
           F+VKTCQ+ IPVT+
Sbjct: 218 FLVKTCQKLIPVTT 231

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448697|ref|XP_004142102.1| PREDICTED: uncharacterized membrane protein STKORF319-like [Cucumis sativus]

 Score =  263 bits (672), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 146/260 (56%), Positives = 175/260 (67%), Gaps = 37/260 (14%)

Query: 3   LASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHF--------CNSQAPTFYSVSH 54
           +AS+I++G+Q   K DS             PK++S LHF         ++  P F  V  
Sbjct: 1   MASIIHNGLQISSKLDS-----------PWPKVSSHLHFHPRAWVEAVHNHVPQFSPVIL 49

Query: 55  NRRGQYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAERQIEGRESY 114
           N R     L+ C+   E+E D ST+E  R+SS                     IEG ES 
Sbjct: 50  NCRPSPRSLVRCSSRIEREGDPSTAEANRTSS-----------------VRGTIEGSESK 92

Query: 115 TSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKV 174
            SS++ VA CV+TAVAFG+GVG  +G  KASEFFAGY+LEQSLSVDNLFVFVLIFKYFKV
Sbjct: 93  VSSIRNVALCVATAVAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKV 152

Query: 175 PVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFAS-EEDD 233
           P  YQNRVL+YGI+GAIVFRL++ILLG ATLQRFEAVNL+LA ILLFSSF+LFAS EEDD
Sbjct: 153 PTEYQNRVLTYGISGAIVFRLTIILLGAATLQRFEAVNLLLAAILLFSSFQLFASNEEDD 212

Query: 234 TDLSDNFIVKTCQRFIPVTS 253
            DLSDNF+VKTCQ+ IPVT+
Sbjct: 213 GDLSDNFVVKTCQQLIPVTA 232

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807259|ref|XP_002871513.1| PDE149 [Arabidopsis lyrata subsp. lyrata] gi|297317350|gb|EFH47772.1| PDE149 [Arabidopsis lyrata subsp. lyrata]

 Score =  261 bits (666), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 154/256 (60%), Positives = 185/256 (72%), Gaps = 15/256 (5%)

Query: 1   MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSH-NRRGQ 59
           M LASVI+ G+ AP K D + L     +   VP       +  S+   F  VS  NRR  
Sbjct: 1   MSLASVIHHGIFAPAKSDRIFL-----TIPVVPPDFRARGWTESR---FSLVSAANRRLS 52

Query: 60  YSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAE-RQIEGRESYTSSV 118
           + P +AC++  +QEDD  + E+       H+ND  + S ++VD       +  E+Y +S 
Sbjct: 53  HLPPIACSREIDQEDDKESREL-----LPHKNDENASSSSSVDSGGLNDYQQEETYKTSF 107

Query: 119 KTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMY 178
           KTVA CV TAVAFG+G+G  EG  KASEFFAGYILEQSLSVDNLFVFVL+FKYFKVP MY
Sbjct: 108 KTVALCVGTAVAFGIGIGLKEGVGKASEFFAGYILEQSLSVDNLFVFVLVFKYFKVPPMY 167

Query: 179 QNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSD 238
           QN+VL+YGIAGAIVFR +LILLGTATLQ+FEAVNL+LA +LL+SSFKLFASEEDDTDLSD
Sbjct: 168 QNKVLTYGIAGAIVFRFTLILLGTATLQKFEAVNLLLAAVLLYSSFKLFASEEDDTDLSD 227

Query: 239 NFIVKTCQRFIPVTSN 254
           NFIVKTCQRFIPVTS+
Sbjct: 228 NFIVKTCQRFIPVTSS 243

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18416778|ref|NP_568257.1| TerC integral membrane domain-containing protein [Arabidopsis thaliana] gi|332004383|gb|AED91766.1| TerC integral membrane domain-containing protein [Arabidopsis thaliana]

 Score =  256 bits (655), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 149/261 (57%), Positives = 184/261 (70%), Gaps = 15/261 (5%)

Query: 1   MGLASVIYSGVQAPHKFDSLLLR---FSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRR 57
           M LASVI+ G+  P K D + L    F P   ++    +      N   P+  S + NRR
Sbjct: 1   MSLASVIHHGILPPAKSDRIFLTIPVFPPDFRARGWTKSPFSLLIN---PSLASAA-NRR 56

Query: 58  GQYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAE----RQIEGRES 113
             + P +AC++G +QED+   S         H+ND  + +  +    +    +  +  E+
Sbjct: 57  LSHLPPIACSRGIDQEDEEKESR----ELLPHKNDENATTSRSSSSVDSGGLKDYQQEET 112

Query: 114 YTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFK 173
           Y +S KTVA CV TAVAFG+G+G  EG  KASEFFAGYILEQSLSVDNLFVFVL+FKYFK
Sbjct: 113 YKTSFKTVALCVGTAVAFGIGIGLKEGVGKASEFFAGYILEQSLSVDNLFVFVLVFKYFK 172

Query: 174 VPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDD 233
           VP+MYQN+VL+YGIAGAIVFR +LILLGTATLQ+FEAVNL+LA +LL+SSFKLFASEEDD
Sbjct: 173 VPLMYQNKVLTYGIAGAIVFRFTLILLGTATLQKFEAVNLLLAAVLLYSSFKLFASEEDD 232

Query: 234 TDLSDNFIVKTCQRFIPVTSN 254
           TDLSDNFIVKTCQRFIPVTS+
Sbjct: 233 TDLSDNFIVKTCQRFIPVTSS 253

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592518|gb|AAM64468.1| transmembrane transport protein-like protein [Arabidopsis thaliana]

 Score =  256 bits (654), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 149/261 (57%), Positives = 184/261 (70%), Gaps = 15/261 (5%)

Query: 1   MGLASVIYSGVQAPHKFDSLLLR---FSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRR 57
           M LASVI+ G+  P K D + L    F P   ++    +      N   P+  S + NRR
Sbjct: 1   MSLASVIHHGILPPAKSDRIFLTIPVFPPDFRARGWTKSPFSLLIN---PSLASAA-NRR 56

Query: 58  GQYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAE----RQIEGRES 113
             + P +AC++G +QED+   S         H+ND  + +  +    +    +  +  E+
Sbjct: 57  LSHLPPIACSRGIDQEDEEKESR----ELLPHKNDENATTSRSSSSVDSGGLKDYQQEET 112

Query: 114 YTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFK 173
           Y +S KTVA CV TAVAFG+G+G  EG  KASEFFAGYILEQSLSVDNLFVFVL+FKYFK
Sbjct: 113 YKTSFKTVALCVGTAVAFGIGIGLKEGVGKASEFFAGYILEQSLSVDNLFVFVLVFKYFK 172

Query: 174 VPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDD 233
           VP+MYQN+VL+YGIAGAIVFR +LILLGTATLQ+FEAVNL+LA +LL+SSFKLFASEEDD
Sbjct: 173 VPLMYQNKVLTYGIAGAIVFRFTLILLGTATLQKFEAVNLLLAAVLLYSSFKLFASEEDD 232

Query: 234 TDLSDNFIVKTCQRFIPVTSN 254
           TDLSDNFIVKTCQRFIPVTS+
Sbjct: 233 TDLSDNFIVKTCQRFIPVTSS 253

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548192|ref|XP_003542487.1| PREDICTED: uncharacterized membrane protein STKORF319-like [Glycine max]

 Score =  254 bits (649), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 148/254 (58%), Positives = 178/254 (70%), Gaps = 33/254 (12%)

Query: 1   MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQY 60
           MGLASV++  + AP                  P   S+LH   S   +F SV H R  + 
Sbjct: 1   MGLASVVH--IHAP------------------PFRCSVLHHPIS---SFCSVYHYRPPRR 37

Query: 61  SPLLACAKGTEQEDDLSTSEVGRSSSQSHEN-DNTSHSPTTVDDAERQIEGRESYTSSVK 119
            PLL C++    ++    SEV R S+Q +++      SPT      ++  G E Y SSV+
Sbjct: 38  FPLL-CSRRIGHDN--YASEVKRISAQQNDDIGKVEKSPT------QESLGNEGYNSSVR 88

Query: 120 TVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQ 179
           TVA  V TAVAFG+G+GF EG  KASEFFAGYILEQSLSVDNLFVFVLIF YFKVPV YQ
Sbjct: 89  TVALWVCTAVAFGVGLGFKEGFDKASEFFAGYILEQSLSVDNLFVFVLIFNYFKVPVTYQ 148

Query: 180 NRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDN 239
           NRVLSYGIAGA+VFRL++IL+GTATLQRFEAVNL+LA ILL+SS KLFASEED++DLSDN
Sbjct: 149 NRVLSYGIAGAVVFRLTIILIGTATLQRFEAVNLLLAAILLYSSSKLFASEEDESDLSDN 208

Query: 240 FIVKTCQRFIPVTS 253
           F+VKTCQ+FIPVT+
Sbjct: 209 FVVKTCQKFIPVTT 222

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	273
TAIR|locus:2177053	384	PDE149 "PIGMENT DEFECTIVE 149"	0.912	0.648	0.593	1.1e-69
UNIPROTKB|Q74EV4	311	GSU0855 "Membrane protein, Ter	0.531	0.466	0.395	4.2e-24
TIGR_CMR|GSU_0855	311	GSU_0855 "membrane protein, Te	0.531	0.466	0.395	4.2e-24
UNIPROTKB|Q74CV1	314	GSU1570 "Membrane protein, Ter	0.523	0.455	0.394	4.8e-23
TIGR_CMR|GSU_1570	314	GSU_1570 "membrane protein, Te	0.523	0.455	0.394	4.8e-23
UNIPROTKB|Q8EG61	325	SO_1747 "Tellurium ion resista	0.487	0.409	0.384	3.5e-20
TIGR_CMR|SO_1747	325	SO_1747 "membrane protein, put	0.487	0.409	0.384	3.5e-20
UNIPROTKB|Q8E9J8	325	SO_4279 "Tellurium ion resista	0.487	0.409	0.384	4.4e-20
TIGR_CMR|SO_4279	325	SO_4279 "membrane protein, put	0.487	0.409	0.384	4.4e-20
UNIPROTKB|P42601	321	alx "predicted membrane-bound	0.472	0.401	0.338	2.2e-18

TAIR|locus:2177053 PDE149 "PIGMENT DEFECTIVE 149" [Arabidopsis thaliana (taxid:3702)]

 Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
 Identities = 153/258 (59%), Positives = 187/258 (72%)

Query:     1 MGLASVIYSGVQAPHKFDSLLLR---FSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRR 57
             M LASVI+ G+  P K D + L    F P   ++    +      N   P+  S + NRR
Sbjct:     1 MSLASVIHHGILPPAKSDRIFLTIPVFPPDFRARGWTKSPFSLLIN---PSLASAA-NRR 56

Query:    58 GQYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAE-RQIEGRESYTS 116
               + P +AC++G +QED+   S       ++ EN  TS S ++VD    +  +  E+Y +
Sbjct:    57 LSHLPPIACSRGIDQEDEEKESRE-LLPHKNDENATTSRSSSSVDSGGLKDYQQEETYKT 115

Query:   117 SVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPV 176
             S KTVA CV TAVAFG+G+G  EG  KASEFFAGYILEQSLSVDNLFVFVL+FKYFKVP+
Sbjct:   116 SFKTVALCVGTAVAFGIGIGLKEGVGKASEFFAGYILEQSLSVDNLFVFVLVFKYFKVPL 175

Query:   177 MYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDL 236
             MYQN+VL+YGIAGAIVFR +LILLGTATLQ+FEAVNL+LA +LL+SSFKLFASEEDDTDL
Sbjct:   176 MYQNKVLTYGIAGAIVFRFTLILLGTATLQKFEAVNLLLAAVLLYSSFKLFASEEDDTDL 235

Query:   237 SDNFIVKTCQRFIPVTSN 254
             SDNFIVKTCQRFIPVTS+
Sbjct:   236 SDNFIVKTCQRFIPVTSS 253

GO:0005886 "plasma membrane" evidence=ISM

GO:0016021 "integral to membrane" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010027 "thylakoid membrane organization" evidence=RCA;IMP

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

UNIPROTKB|Q74EV4 GSU0855 "Membrane protein, TerC family" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 59/149 (39%), Positives = 93/149 (62%)

Query:   107 QIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFV 166
             +I+ RE+ T    T+ + VS A++F   + F  G +KA EFF GY++EQSLSVDNLFVF+
Sbjct:    32 EIKFREALTW---TLVW-VSLALSFNAWIYFEMGPTKAMEFFTGYLIEQSLSVDNLFVFI 87

Query:   167 LIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKL 226
             +IF YF +  ++Q ++L +GI GA+V R   IL G   ++RF  +  V  GIL+ + FK+
Sbjct:    88 MIFTYFHITKVHQPKILKWGIIGALVLRAIFILAGIELIERFHWMIYVFGGILVVTGFKM 147

Query:   227 FASEEDDTDLSDNFIVKTCQRFIPVTSNV 255
                 E+  +   N IV+  ++ +P+T  +
Sbjct:   148 AFGGEEKIEPEKNPIVRLVRKLVPITKRI 176

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_0855 GSU_0855 "membrane protein, TerC family" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 59/149 (39%), Positives = 93/149 (62%)

Query:   107 QIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFV 166
             +I+ RE+ T    T+ + VS A++F   + F  G +KA EFF GY++EQSLSVDNLFVF+
Sbjct:    32 EIKFREALTW---TLVW-VSLALSFNAWIYFEMGPTKAMEFFTGYLIEQSLSVDNLFVFI 87

Query:   167 LIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKL 226
             +IF YF +  ++Q ++L +GI GA+V R   IL G   ++RF  +  V  GIL+ + FK+
Sbjct:    88 MIFTYFHITKVHQPKILKWGIIGALVLRAIFILAGIELIERFHWMIYVFGGILVVTGFKM 147

Query:   227 FASEEDDTDLSDNFIVKTCQRFIPVTSNV 255
                 E+  +   N IV+  ++ +P+T  +
Sbjct:   148 AFGGEEKIEPEKNPIVRLVRKLVPITKRI 176

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=ISS

UNIPROTKB|Q74CV1 GSU1570 "Membrane protein, TerC family" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 58/147 (39%), Positives = 91/147 (61%)

Query:   111 RESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFK 170
             R S+  ++      V  A+AF +G+ F+ G  KA EF  GY++E+SLSVDNLFVF++IF 
Sbjct:    31 RVSFKEALGWSILWVGLALAFNVGIYFVLGQQKALEFLTGYLIEKSLSVDNLFVFIMIFT 90

Query:   171 YFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKL-F-A 228
              F V    Q RVL +GI GA++ R+  I LG   L+RF+ +  +   +L++++ K+ F A
Sbjct:    91 VFGVRGELQARVLKWGILGALIMRVVFIFLGAELLERFQWLFYIFGAVLIYTASKMAFGA 150

Query:   229 SEEDDTDLSDNFIVKTCQRFIPVTSNV 255
             SEE D D   N +V+  ++ +P+T  +
Sbjct:   151 SEEMDPD--KNLMVRLARKVLPMTRKI 175

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_1570 GSU_1570 "membrane protein, TerC family" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 58/147 (39%), Positives = 91/147 (61%)

Query:   111 RESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFK 170
             R S+  ++      V  A+AF +G+ F+ G  KA EF  GY++E+SLSVDNLFVF++IF 
Sbjct:    31 RVSFKEALGWSILWVGLALAFNVGIYFVLGQQKALEFLTGYLIEKSLSVDNLFVFIMIFT 90

Query:   171 YFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKL-F-A 228
              F V    Q RVL +GI GA++ R+  I LG   L+RF+ +  +   +L++++ K+ F A
Sbjct:    91 VFGVRGELQARVLKWGILGALIMRVVFIFLGAELLERFQWLFYIFGAVLIYTASKMAFGA 150

Query:   229 SEEDDTDLSDNFIVKTCQRFIPVTSNV 255
             SEE D D   N +V+  ++ +P+T  +
Sbjct:   151 SEEMDPD--KNLMVRLARKVLPMTRKI 175

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=ISS

UNIPROTKB|Q8EG61 SO_1747 "Tellurium ion resistance family protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 53/138 (38%), Positives = 84/138 (60%)

Query:   117 SVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPV 176
             S+K  AF +   + FG  + + +G++   E+  GY++E+SLS+DN+FV  LIF    +P 
Sbjct:    46 SLKLSAFYICMGLLFGAWLWWYKGSTAGMEYLTGYLIEKSLSMDNVFVIALIFSSLGIPR 105

Query:   177 MYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGI-LLFSSFKLFASEEDDTD 235
             +YQ+RVL +GI G IV R  +I LG A + +++ V LVL G+ L+F+  K+  S ++  D
Sbjct:   106 LYQHRVLFWGIMGVIVLRAIMIGLGAALVAQYQGV-LVLFGLFLIFTGIKMLFSNDEHGD 164

Query:   236 LSDNFIVKTCQ---RFIP 250
             + DN   K  +   RF P
Sbjct:   165 IQDNKFYKWLRSKMRFTP 182

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_1747 SO_1747 "membrane protein, putative" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 53/138 (38%), Positives = 84/138 (60%)

Query:   117 SVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPV 176
             S+K  AF +   + FG  + + +G++   E+  GY++E+SLS+DN+FV  LIF    +P 
Sbjct:    46 SLKLSAFYICMGLLFGAWLWWYKGSTAGMEYLTGYLIEKSLSMDNVFVIALIFSSLGIPR 105

Query:   177 MYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGI-LLFSSFKLFASEEDDTD 235
             +YQ+RVL +GI G IV R  +I LG A + +++ V LVL G+ L+F+  K+  S ++  D
Sbjct:   106 LYQHRVLFWGIMGVIVLRAIMIGLGAALVAQYQGV-LVLFGLFLIFTGIKMLFSNDEHGD 164

Query:   236 LSDNFIVKTCQ---RFIP 250
             + DN   K  +   RF P
Sbjct:   165 IQDNKFYKWLRSKMRFTP 182

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q8E9J8 SO_4279 "Tellurium ion resistance family protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 53/138 (38%), Positives = 84/138 (60%)

Query:   117 SVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPV 176
             S+K  AF +   + FG  + + +G++   E+  GY++E+SLS+DN+FV  LIF    +P 
Sbjct:    46 SLKLSAFYICMGLLFGAWLWWYKGSTAGMEYLTGYLIEKSLSMDNVFVIALIFSSLGIPR 105

Query:   177 MYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGI-LLFSSFKLFASEEDDTD 235
             +YQ+RVL +GI G IV R  +I LG A + +++ V LVL G+ L+F+  K+  S ++  D
Sbjct:   106 LYQHRVLFWGIMGVIVLRAIMIGLGAALVAQYQGV-LVLFGLFLIFTGIKVLFSNDEHGD 164

Query:   236 LSDNFIVKTCQ---RFIP 250
             + DN   K  +   RF P
Sbjct:   165 IQDNKFYKWLRSKMRFTP 182

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_4279 SO_4279 "membrane protein, putative" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 53/138 (38%), Positives = 84/138 (60%)

Query:   117 SVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPV 176
             S+K  AF +   + FG  + + +G++   E+  GY++E+SLS+DN+FV  LIF    +P 
Sbjct:    46 SLKLSAFYICMGLLFGAWLWWYKGSTAGMEYLTGYLIEKSLSMDNVFVIALIFSSLGIPR 105

Query:   177 MYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGI-LLFSSFKLFASEEDDTD 235
             +YQ+RVL +GI G IV R  +I LG A + +++ V LVL G+ L+F+  K+  S ++  D
Sbjct:   106 LYQHRVLFWGIMGVIVLRAIMIGLGAALVAQYQGV-LVLFGLFLIFTGIKVLFSNDEHGD 164

Query:   236 LSDNFIVKTCQ---RFIP 250
             + DN   K  +   RF P
Sbjct:   165 IQDNKFYKWLRSKMRFTP 182

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|P42601 alx "predicted membrane-bound redox modulator that is induced by high pH" [Escherichia coli K-12 (taxid:83333)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 44/130 (33%), Positives = 77/130 (59%)

Query:   143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 202
             +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  G+
Sbjct:    75 QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVLGAIVLRTIMIFTGS 134

Query:   203 ATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSNVLCTHSLY 262
               + +F+ +  +    LLF+  K+  + ED++ + D  +V+  +  + +T  +   H  +
Sbjct:   135 WLISQFDWILYIFGAFLLFTGVKMALAHEDESGIGDKPLVRWLRGHLRMTDTIDNEH-FF 193

Query:   263 VSLSEFLHLT 272
             V  +  L+ T
Sbjct:   194 VRKNGLLYAT 203

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	273
TIGR03718	302	TIGR03718, R_switched_Alx, integral membrane prote	1e-47
pfam03741	184	pfam03741, TerC, Integral membrane protein TerC fa	6e-29
COG0861	254	COG0861, TerC, Membrane protein TerC, possibly inv	3e-17
TIGR03716	215	TIGR03716, R_switched_YkoY, integral membrane prot	5e-05

>gnl|CDD|234327 TIGR03718, R_switched_Alx, integral membrane protein, TerC family

 Score =  160 bits (407), Expect = 1e-47
 Identities = 59/136 (43%), Positives = 84/136 (61%)

Query: 117 SVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPV 176
           ++   A  VS A+ FG GV F  G   A EF  GY++E+SLSVDNLFVF+LIF YF VP 
Sbjct: 35  ALLWSAVWVSLALLFGGGVWFYLGGEAALEFLTGYLIEKSLSVDNLFVFLLIFSYFAVPR 94

Query: 177 MYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDL 236
            YQ+RVL +GI GA+V R   I  G A +++F  V  +    LL++  K+    +++ D 
Sbjct: 95  EYQHRVLFWGILGALVLRAIFIAAGAALIEQFHWVLYIFGAFLLYTGIKMLFEGDEEDDP 154

Query: 237 SDNFIVKTCQRFIPVT 252
            +N +V+  +R +PVT
Sbjct: 155 ENNPLVRLVRRVLPVT 170

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader. Length = 302

>gnl|CDD|217707 pfam03741, TerC, Integral membrane protein TerC family

 Score =  107 bits (271), Expect = 6e-29
 Identities = 47/109 (43%), Positives = 70/109 (64%), Gaps = 4/109 (3%)

Query: 148 FAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQR 207
              Y+LE SLSVDN FV  LIF+  K+P   Q + L +GI GA+V R+ LILLG+A L+ 
Sbjct: 1   LTLYLLEISLSVDNAFVIALIFR--KLPPEQQKKALFWGIIGALVLRIILILLGSALLEL 58

Query: 208 FEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSNVL 256
           F+ + L+    LL+++ KL    E+D +  +N IV+  ++ +PVTS+ L
Sbjct: 59  FDWILLIGGAFLLYTAIKLLRENEEDDE--ENKIVRELKKVLPVTSSSL 105

This family contains a number of integral membrane proteins that also contains the TerC protein. TerC has been implicated in resistance to tellurium. This protein may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of the group of clinical isolates for antibiotics and heavy metal ion resistance. Determinant of the tellurite resistance of the strain was located on a large conjugative plasmid. Analyses showed, the genes terB, terC, terD and terE are essential for conservation of the resistance. The members of the family contain a number of conserved aspartates that could be involved in binding to metal ions. Length = 184

>gnl|CDD|223930 COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]

 Score = 78.8 bits (195), Expect = 3e-17
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 2/88 (2%)

Query: 146 EFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATL 205
                 +LE  L +DN  V  ++      P   + + L  G+AGA+V R+ L+   +  L
Sbjct: 19  ALLTLILLEIVLGIDNAIVIAILASKL--PPKQRKKALFIGLAGALVLRIILLASISWLL 76

Query: 206 QRFEAVNLVLAGILLFSSFKLFASEEDD 233
              + +  +    LL+   KL       
Sbjct: 77  TLTQPLLYIFGLYLLWRDIKLLLGGLFL 104

Length = 254

>gnl|CDD|234326 TIGR03716, R_switched_YkoY, integral membrane protein, YkoY family

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 3/82 (3%)

Query: 152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAV 211
           ILE  LS DN  V  ++ K+  +P   + + L YG+ GA VFR   + L +  L +F  +
Sbjct: 2   ILEGLLSADNALVLAVMVKH--LPEKQRKKALFYGLIGAYVFRFIALFLAS-FLIKFWWI 58

Query: 212 NLVLAGILLFSSFKLFASEEDD 233
             + A  LL+ + K F  ++  
Sbjct: 59  KAIGALYLLYLAIKHFRKKKKG 80

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed. Length = 215

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	273
TIGR03718	302	R_switched_Alx integral membrane protein, TerC fam	100.0
COG0861	254	TerC Membrane protein TerC, possibly involved in t	99.92
PF03741	183	TerC: Integral membrane protein TerC family; Inter	99.92
TIGR03716	215	R_switched_YkoY integral membrane protein, YkoY fa	99.88
TIGR03717	176	R_switched_YjbE integral membrane protein, YjbE fa	99.8
COG2899	346	Uncharacterized protein conserved in bacteria [Fun	99.76
PRK14013	338	hypothetical protein; Provisional	99.76
PF04332	294	DUF475: Protein of unknown function (DUF475); Inte	99.11
PF03741	183	TerC: Integral membrane protein TerC family; Inter	97.12
PRK10995	221	inner membrane protein; Provisional	97.08
TIGR03717	176	R_switched_YjbE integral membrane protein, YjbE fa	96.95
TIGR03716	215	R_switched_YkoY integral membrane protein, YkoY fa	96.94
COG0861	254	TerC Membrane protein TerC, possibly involved in t	96.82
TIGR00427	201	membrane protein, MarC family. MarC is a protein t	96.63
PF01914	203	MarC: MarC family integral membrane protein; Inter	96.62
PRK10739	197	putative antibiotic transporter; Provisional	96.42
PRK10323	195	cysteine/O-acetylserine exporter; Provisional	96.39
PRK11111	214	hypothetical protein; Provisional	96.34
COG2095	203	MarC Multiple antibiotic transporter [Intracellula	96.02
PRK09304	207	arginine exporter protein; Provisional	95.67
PRK10229	206	threonine efflux system; Provisional	95.59
TIGR03718	302	R_switched_Alx integral membrane protein, TerC fam	95.53
COG1280	208	RhtB Putative threonine efflux protein [Amino acid	95.36
TIGR00948	177	2a75 L-lysine exporter.	95.17
PF03596	191	Cad: Cadmium resistance transporter; InterPro: IPR	94.42
PRK10520	205	rhtB homoserine/homoserine lactone efflux protein;	94.37
PF01810	191	LysE: LysE type translocator; InterPro: IPR001123	94.3
COG1971	190	Predicted membrane protein [Function unknown]	93.77
TIGR00949	185	2A76 The Resistance to Homoserine/Threonine (RhtB)	93.62
PRK10958	212	leucine export protein LeuE; Provisional	93.61
PRK11469	188	hypothetical protein; Provisional	92.42
COG1279	202	Lysine efflux permease [General function predictio	91.76
PRK11469	188	hypothetical protein; Provisional	90.49
TIGR02840	206	spore_YtaF putative sporulation protein YtaF. This	90.29
COG2119	190	Predicted membrane protein [Function unknown]	88.77
COG4300	205	CadD Predicted permease, cadmium resistance protei	88.24
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	88.08
TIGR00900	365	2A0121 H+ Antiporter protein.	88.0
COG1971	190	Predicted membrane protein [Function unknown]	87.6
TIGR00779	193	cad cadmium resistance transporter (or sequestrati	87.35
PRK12392	331	bacteriochlorophyll c synthase; Provisional	83.3
TIGR00901	356	2A0125 AmpG-related permease.	81.12

>TIGR03718 R_switched_Alx integral membrane protein, TerC family

Probab=100.00  E-value=1.6e-49  Score=369.72  Aligned_cols=163  Identities=39%  Similarity=0.619  Sum_probs=157.5

Q ss_pred             cchhhhhhhhHHHHHHHHHHHHhhHhhhhcChhhHHHHHHHHHHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHH
Q 024079          110 GRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAG  189 (273)
Q Consensus       110 ~~is~keA~~wS~~wI~LAllFg~~i~~~~G~~~a~ef~tgylLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~g  189 (273)
                      .++|+|||+.||++|+++|++||+++|++.|.+.+.||+|||++|++||+||+|||++||++|++|+++|||+|+|||+|
T Consensus        28 ~~~~~kea~~ws~~~v~la~~F~~~i~~~~g~~~~~~f~tg~llE~~LSvDN~fV~~~if~~f~vP~~~q~rvL~~Gi~g  107 (302)
T TIGR03718        28 HVVSFKEALLWSAFWVSLALLFGGGVWFYLGGEAALEFLTGYLIEKSLSVDNLFVFLLIFSYFAVPREYQHRVLFWGILG  107 (302)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhccCCCCCCCccHHHHHHHhhccccccccCceeEEEeeccee
Q 024079          190 AIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSNVLCTHSLYVSLSEFL  269 (273)
Q Consensus       190 Aiv~RiIfI~~G~~Li~~f~wI~~ifGafLL~tg~K~~~~~ee~~d~~~n~ivk~lrk~lPvt~~y~G~kff~v~~~g~l  269 (273)
                      |++||++||++|++++++|+|++++||+||+|+|+|++++++|++|+++|+.+||+||++|+|++|||++| ++|.||.+
T Consensus       108 AlvlR~i~i~~g~~Li~~f~wi~~ifG~fLi~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~f-~~~~~g~~  186 (302)
T TIGR03718       108 ALVLRAIFIALGAALIEQFHWVLYIFGAFLLYTGIKMLFEGDEEDDPENNPLVRLLRRVLPVTDKYHGDRF-FVRENGKR  186 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccccCccccHHHHHHHhhcCCCccccCCce-eeeecCce
Confidence            99999999999999999999999999999999999999988777788899999999999999999999995 78899999


Q ss_pred             eccC
Q 024079          270 HLTS  273 (273)
Q Consensus       270 ~~~~  273 (273)
                      ++|+
T Consensus       187 ~~tp  190 (302)
T TIGR03718       187 YATP  190 (302)
T ss_pred             ecCc
Confidence            9884

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.

>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]

Probab=99.92  E-value=1.4e-24  Score=198.54  Aligned_cols=120  Identities=21%  Similarity=0.244  Sum_probs=106.7

Q ss_pred             HhhHhhhhcChhhH--HHHHHHHHHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024079          131 FGLGVGFIEGASKA--SEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF  208 (273)
Q Consensus       131 Fg~~i~~~~G~~~a--~ef~tgylLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f  208 (273)
                      |+...|+..+.+.+  .+|+|+|++|++||+||++|+++++++  +|+++|||+++||+++|++||+++++.|+++++.+
T Consensus         2 f~~~~~~~~~~~~~~~~~l~tl~~lE~vL~iDN~iviai~~~~--Lp~~qr~ral~~Gl~~A~v~R~~ll~~~s~Ll~l~   79 (254)
T COG0861           2 FGIALYMEWLADPAAWVALLTLILLEIVLGIDNAIVIAILASK--LPPKQRKKALFIGLAGALVLRIILLASISWLLTLT   79 (254)
T ss_pred             chHHHHHHHhcCchHHHHHHHHHHHHHHHHhhHHHHHHHHHhh--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            56666766665554  599999999999999999999999996  78999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhhhhhccCCCCCCCccHHHHHHHhhccccccccCceeEE
Q 024079          209 EAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSNVLCTHSLY  262 (273)
Q Consensus       209 ~wI~~ifGafLL~tg~K~~~~~ee~~d~~~n~ivk~lrk~lPvt~~y~G~kff~  262 (273)
                      +|++++||++|+|+++||+.+++++.       .|+.++..   ++++|++++.
T Consensus        80 ~~l~~~fg~~L~~~~~~ll~~~~~~~-------~k~~~~~~---~~~~~~~~~~  123 (254)
T COG0861          80 QPLLYIFGLYLLWRDIKLLLGGLFLL-------FKATKELH---ERLEGEEFFV  123 (254)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchhHH-------HHHHHHHh---hhhccccccc
Confidence            99999999999999999999876543       68888877   8899999755

>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein

Probab=99.92  E-value=7.6e-25  Score=190.84  Aligned_cols=104  Identities=35%  Similarity=0.543  Sum_probs=94.7

Q ss_pred             HHHHHHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhh
Q 024079          148 FAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLF  227 (273)
Q Consensus       148 ~tgylLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f~wI~~ifGafLL~tg~K~~  227 (273)
                      +|+|++|++||+||++|+++++++  +|+++|+|+++||+.+|+++|++|+++|+++++.|+|++++||++|+|+|+|++
T Consensus         1 ltl~~lE~~Ls~DN~~vi~~~~~~--lp~~~r~kal~~Gi~~A~~lR~~~i~~~~~ll~~~~~i~~igG~~Ll~~a~k~~   78 (183)
T PF03741_consen    1 LTLVLLEIVLSIDNAFVIAMIFRK--LPPEQRRKALFWGIIGAIVLRIIFIFLASWLLSIFPWILLIGGLFLLYIAIKLL   78 (183)
T ss_pred             CchhhhhHHHHhhHHHHHHHHHhC--CCHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999996  999999999999999999999999999999999779999999999999999999


Q ss_pred             hccCCCCCCCccHHHHHHHhhccccccc
Q 024079          228 ASEEDDTDLSDNFIVKTCQRFIPVTSNV  255 (273)
Q Consensus       228 ~~~ee~~d~~~n~ivk~lrk~lPvt~~y  255 (273)
                      ++++ ++|+ +|...++.++..|.++++
T Consensus        79 ~~~~-~~d~-~~~~~~~~~~~~~~~~~~  104 (183)
T PF03741_consen   79 HEER-DEDP-ENAEVEEEKKFFPVSKSS  104 (183)
T ss_pred             Hhcc-cccc-chhhhhhhhccccchhHH
Confidence            9876 4455 777788888888776654

TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane

>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family

Probab=99.88  E-value=1.8e-22  Score=180.88  Aligned_cols=81  Identities=31%  Similarity=0.508  Sum_probs=75.5

Q ss_pred             HHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhccC
Q 024079          152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEE  231 (273)
Q Consensus       152 lLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f~wI~~ifGafLL~tg~K~~~~~e  231 (273)
                      ++|++||+||++|++++++  ++|+++|+|+++||+.||++||++|+++|+++++ ++|+.++||++|+|+|+|++++++
T Consensus         2 ~lE~vLS~DN~~via~~~~--~LP~~~r~~al~~Gi~gAivlR~i~i~~~~~Ll~-~~~l~~iGG~~Ll~~~~k~l~~~~   78 (215)
T TIGR03716         2 ILEGLLSADNALVLAVMVK--HLPEKQRKKALFYGLIGAYVFRFIALFLASFLIK-FWWIKAIGALYLLYLAIKHFRKKK   78 (215)
T ss_pred             chhHHHHhhHHHHHHHHHh--hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcc
Confidence            6899999999999999999  5999999999999999999999999999999997 789999999999999999999765


Q ss_pred             CCCC
Q 024079          232 DDTD  235 (273)
Q Consensus       232 e~~d  235 (273)
                      ++++
T Consensus        79 ~~~~   82 (215)
T TIGR03716        79 KGKE   82 (215)
T ss_pred             cccc
Confidence            4433

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.

>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family

Probab=99.80  E-value=2.6e-19  Score=155.47  Aligned_cols=86  Identities=26%  Similarity=0.419  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 024079          147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKL  226 (273)
Q Consensus       147 f~tgylLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f~wI~~ifGafLL~tg~K~  226 (273)
                      +++..++|.+||+||++|++++.+  ++|+++|+|++.||+++|+++|++|+++|.++++ ++|+.++||++|+|+|+||
T Consensus         2 ~~~li~le~vLs~DN~~vi~~~t~--~lp~~~r~~~~~~G~~~A~vlr~if~~~G~~ll~-~~~~~iaGGllLl~ia~~m   78 (176)
T TIGR03717         2 LLQIIAIDLVLGGDNAVVIALAAR--NLPAHQRKKAIFWGTAGAIVLRILLTAVAVYLLA-IPFLKLIGGLLLLWIGWKL   78 (176)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHH
Confidence            457789999999999999999766  7999999999999999999999999999999998 8999999999999999999


Q ss_pred             hhccCCCCC
Q 024079          227 FASEEDDTD  235 (273)
Q Consensus       227 ~~~~ee~~d  235 (273)
                      +.++++++|
T Consensus        79 l~~~~~~~~   87 (176)
T TIGR03717        79 LLEEEEEQG   87 (176)
T ss_pred             Hhccccccc
Confidence            987654444

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.

>COG2899 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.76  E-value=5.5e-18  Score=158.54  Aligned_cols=139  Identities=23%  Similarity=0.262  Sum_probs=115.1

Q ss_pred             hhhhhhhhHHHHHHHHHHHHhhHhhhhcChh-hHHHHHHHH--HHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHH
Q 024079          112 ESYTSSVKTVAFCVSTAVAFGLGVGFIEGAS-KASEFFAGY--ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIA  188 (273)
Q Consensus       112 is~keA~~wS~~wI~LAllFg~~i~~~~G~~-~a~ef~tgy--lLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~  188 (273)
                      |+..+.++||.+..++|++.++|.+|..|.. ...-|++.+  ++|.|||.||++|++.|.+.  +.+.||||.|.|||+
T Consensus         1 m~~~r~F~~s~i~Tvi~L~~a~w~gy~~~G~~~~~l~i~~vLavLEiSLSFDNAIvNA~iLk~--MS~~Wqk~FLT~GIl   78 (346)
T COG2899           1 MTAFRYFGWSFIVTVIALALAAWLGYEYGGTMWTALFICAVLAVLEISLSFDNAIVNAAILKD--MSPFWQKRFLTWGIL   78 (346)
T ss_pred             CchHhhcchHHHHHHHHHHHHHHHhHhhcCchHHHHHHHHHHHHhhhheechHHHhhHHHHHh--ccHHHHHHHHHHHHH
Confidence            3567889999999999999999999987654 455566666  89999999999999999995  999999999999999


Q ss_pred             HHHH-HHHHHHHHHHHHHHh------------------------hhHHHHHHHHHHHHHHhhhhhccCCCCCCCccHHHH
Q 024079          189 GAIV-FRLSLILLGTATLQR------------------------FEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVK  243 (273)
Q Consensus       189 gAiv-~RiIfI~~G~~Li~~------------------------f~wI~~ifGafLL~tg~K~~~~~ee~~d~~~n~ivk  243 (273)
                      +|+. ||++|+++-++.-..                        .+.|..+||.||++.+.+++.+.|+|.+    | .|
T Consensus        79 IAVFGMRlvFPl~IV~vaa~~~pi~a~~lAl~~P~~Y~~ii~~aH~~IAAFGG~FLlMv~L~fffd~erd~h----W-l~  153 (346)
T COG2899          79 IAVFGMRLVFPLVIVAVAAGLDPIRAMKLALEPPESYAKIITDAHPQIAAFGGTFLLMVFLDFFFDHERDVH----W-LK  153 (346)
T ss_pred             HHHHhhHHHHHHHHHHHhcCCChHHHHHHHccCcHHHHHHHHhcCchhhhhhhHHHHHHHHHHhcCccccch----h-hh
Confidence            9997 999999886655431                        1248899999999999999998777665    6 78


Q ss_pred             HHHhhccccccccC
Q 024079          244 TCQRFIPVTSNVLC  257 (273)
Q Consensus       244 ~lrk~lPvt~~y~G  257 (273)
                      |+++.+--..+.++
T Consensus       154 ~iE~~~arig~~~~  167 (346)
T COG2899         154 WIERPLARIGRLGG  167 (346)
T ss_pred             hHHHHHHHhcCCCC
Confidence            88887755544444

>PRK14013 hypothetical protein; Provisional

Probab=99.76  E-value=1.4e-17  Score=158.08  Aligned_cols=133  Identities=22%  Similarity=0.213  Sum_probs=109.4

Q ss_pred             hhhhhHHHHHHHHHHHHhhHhhhhcChhhHHHHHHHHHHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHH-HH
Q 024079          115 TSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VF  193 (273)
Q Consensus       115 keA~~wS~~wI~LAllFg~~i~~~~G~~~a~ef~tgylLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAi-v~  193 (273)
                      .+.++||.++..++++.+.++++   .+.....++..++|.+||+||++|++.+.+  ++|++||+|+|.|||++|+ .|
T Consensus         3 ~~~f~~s~~~t~~~l~~~~~~g~---~~~~~~~~~L~vLEisLsfDNaIvnA~vl~--~m~~~wq~~fl~~Gi~iAvFgm   77 (338)
T PRK14013          3 LRYFRWSFIVTVIGLVLAAWLGG---LSALFIVAILAVLEISLSFDNAVVNATVLK--RMSPKWQKRFLTWGILIAVFGM   77 (338)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHh--hCCHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999998877764   355556677779999999999999999999  5999999999999999998 89


Q ss_pred             HHHHHHHHHHHHHh----------------h--------hHHHHHHHHHHHHHHhhhhhccCCCCCCCccHHHHHHHhhc
Q 024079          194 RLSLILLGTATLQR----------------F--------EAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFI  249 (273)
Q Consensus       194 RiIfI~~G~~Li~~----------------f--------~wI~~ifGafLL~tg~K~~~~~ee~~d~~~n~ivk~lrk~l  249 (273)
                      |++|+++-+++...                |        +.+..+||+||++.+.+.+.++|+|.+    | .+|++|.+
T Consensus        78 Rlvfp~~iv~i~a~~~p~~~~~~a~s~~~~Y~~~l~~ah~~I~~fGG~FLlmvfL~f~fd~ek~~~----W-l~~iE~~~  152 (338)
T PRK14013         78 RLVFPLLIVAVAAGLGPIEALKLALNDPDEYAEILTDAHPQIAAFGGTFLLMVFLNFFFDEEKDVH----W-LGWIERPL  152 (338)
T ss_pred             HHHHHHHHHHHHhcCChHHHHHHHcCCchhHHHHHhhhhHHHHHHHHHHHHHHHHHHhcCcCCCcc----c-hhHHHHHH
Confidence            99999998877662                1        148899999999999999997776665    6 67777666


Q ss_pred             cccccccC
Q 024079          250 PVTSNVLC  257 (273)
Q Consensus       250 Pvt~~y~G  257 (273)
                      .-..+.++
T Consensus       153 ~~~g~~~~  160 (338)
T PRK14013        153 AKLGKLDG  160 (338)
T ss_pred             HHhcCccc
Confidence            44444443

>PF04332 DUF475: Protein of unknown function (DUF475); InterPro: IPR007427 This entry contains proteins that are predicted to be an integral membrane proteins with multiple transmembrane domains

Probab=99.11  E-value=1.2e-10  Score=109.42  Aligned_cols=91  Identities=22%  Similarity=0.302  Sum_probs=73.6

Q ss_pred             chhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHh----------------h--------hHHHH
Q 024079          159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIV-FRLSLILLGTATLQR----------------F--------EAVNL  213 (273)
Q Consensus       159 vDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv-~RiIfI~~G~~Li~~----------------f--------~wI~~  213 (273)
                      .||++|+|.+.+.  +.+.||+|.|.|||++|+. ||++|+++-+++-..                |        +.+..
T Consensus         1 FDNAVVNA~vLk~--Ms~~Wq~~FLtwGIlIAVFGMRlvFPllIV~~~a~lgp~ea~~lA~~~p~~Y~~~l~~ah~~Iaa   78 (294)
T PF04332_consen    1 FDNAVVNATVLKR--MSPFWQRRFLTWGILIAVFGMRLVFPLLIVWVTAGLGPIEALRLALNDPPQYAEILEDAHPQIAA   78 (294)
T ss_pred             CCchhhhHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHhCCHHHHHHHHHhhhHHHHH
Confidence            5999999999995  9999999999999999996 999999997776652                1        23888


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCccHHHHHHHhhccccccccC
Q 024079          214 VLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSNVLC  257 (273)
Q Consensus       214 ifGafLL~tg~K~~~~~ee~~d~~~n~ivk~lrk~lPvt~~y~G  257 (273)
                      +||+||++.+.+.+.++++ .+    | .+|++|.+.-..+.++
T Consensus        79 FGG~FLlmvfL~f~f~~~k-~~----W-l~~iE~~l~~~g~~~~  116 (294)
T PF04332_consen   79 FGGMFLLMVFLDFFFDEEK-VH----W-LRWIERPLAKLGKLDA  116 (294)
T ss_pred             HhHHHHHHHHHheeecCCc-ce----e-ehHHHHHHHHcCCccc
Confidence            9999999999999987665 33    6 5777777644444433

>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein

Probab=97.12  E-value=0.0051  Score=54.25  Aligned_cols=69  Identities=26%  Similarity=0.310  Sum_probs=57.3

Q ss_pred             HHHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhh
Q 024079          151 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIV-FRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFA  228 (273)
Q Consensus       151 ylLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv-~RiIfI~~G~~Li~~f~wI~~ifGafLL~tg~K~~~  228 (273)
                      .+.+.+.|+||+.....+.+        +--++..|.+.|+. ||...-.+ +.++++|+|+.+.++++|.|+|.||+.
T Consensus       113 ~~~DlvfSlDSV~a~~~it~--------~~~iv~~g~i~si~~m~~~~~~~-~~~l~~~p~l~~~~~~~L~~ig~~li~  182 (183)
T PF03741_consen  113 ELADLVFSLDSVLAAVGITD--------DFFIVITGNIISILLMRFLSFLL-AKLLERFPYLKYLAAAILGFIGVKLIL  182 (183)
T ss_pred             HHHHHHHHHhHHHHHHHHhh--------hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            37889999999998888773        55778889888886 77655544 557889999999999999999999975

TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane

>PRK10995 inner membrane protein; Provisional

Probab=97.08  E-value=0.0048  Score=55.37  Aligned_cols=70  Identities=11%  Similarity=0.192  Sum_probs=62.0

Q ss_pred             chhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHhhhhhcc
Q 024079          159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASE  230 (273)
Q Consensus       159 vDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f----~wI~~ifGafLL~tg~K~~~~~  230 (273)
                      +.|+-+|....+  +.++++|+|+.....+.|.+.=++|.+.|..+++-|    +.+...||++|++.|++|++++
T Consensus        22 ~g~~pif~~lt~--~~~~~~r~~ia~~~~~~a~~ill~f~~~G~~il~~fgIs~~a~rIaGGilL~~igi~ml~~~   95 (221)
T PRK10995         22 LTTVALFLGLSG--NMTPEERNRQALMASVYVFAIMMVAFYAGQLVMSTFGISIPGLRIAGGLIVAFIGFRMLFPQ   95 (221)
T ss_pred             hhhHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence            468889999888  489999999999999999998899999999999844    4789999999999999999754

>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family

Probab=96.95  E-value=0.0088  Score=52.50  Aligned_cols=72  Identities=17%  Similarity=0.157  Sum_probs=54.1

Q ss_pred             HHHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhc
Q 024079          151 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFAS  229 (273)
Q Consensus       151 ylLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f~wI~~ifGafLL~tg~K~~~~  229 (273)
                      .+.+.+.|+||+.....+.+.       +-.++..|+..++.+=...--.-..++++|+++.+.++++|.|+|.||+.+
T Consensus       104 ~~~D~~fS~DsV~a~~~~~~~-------~~~li~~g~~i~i~~m~~~s~~~~~~~~~~p~l~~~~~~~L~~ig~kl~~~  175 (176)
T TIGR03717       104 VIADAVMSLDNVLAVAGAAHG-------HLGLLIFGLLLSIPIIVWGSTLILKLMDRFPWIIYIGAALLGYVAGEMIVT  175 (176)
T ss_pred             HHHHHHHHHHHHHHHHHHhcC-------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            378889999999988776652       446778888777742222222345567789999999999999999999863

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.

>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family

Probab=96.94  E-value=0.012  Score=53.66  Aligned_cols=72  Identities=19%  Similarity=0.255  Sum_probs=59.7

Q ss_pred             HHHHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhh
Q 024079          150 GYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIV-FRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFA  228 (273)
Q Consensus       150 gylLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv-~RiIfI~~G~~Li~~f~wI~~ifGafLL~tg~K~~~  228 (273)
                      -.+.+.+.|+||+.....+.+        ..-+++.|.+.++. ||..--.+ +.++++|+++.+.+.++|.|+|.||+.
T Consensus       102 I~~~DlvFSlDSV~A~~git~--------~~~ii~~g~~~sIl~lr~~s~~l-~~li~r~p~L~~~~~~iL~~ig~kLil  172 (215)
T TIGR03716       102 VELMDIAFSVDSILAAVALSG--------QFWVVFLGGIIGILIMRFAATIF-VKLLERFPELETAAFLLIGWIGVKLLL  172 (215)
T ss_pred             HHHHHHHHHhhhHHHHHHhcc--------ChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            347889999999998887754        44578888888885 88776666 568899999999999999999999998


Q ss_pred             cc
Q 024079          229 SE  230 (273)
Q Consensus       229 ~~  230 (273)
                      +.
T Consensus       173 ~~  174 (215)
T TIGR03716       173 ET  174 (215)
T ss_pred             HH
Confidence            64

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.

>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]

Probab=96.82  E-value=0.028  Score=52.40  Aligned_cols=70  Identities=24%  Similarity=0.322  Sum_probs=59.6

Q ss_pred             HHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhcc
Q 024079          152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIV-FRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASE  230 (273)
Q Consensus       152 lLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv-~RiIfI~~G~~Li~~f~wI~~ifGafLL~tg~K~~~~~  230 (273)
                      +++.+-|+||+.....+.+        +.-+++.|.+.|+. ||...-.+ +.++++++++.+.+.++|+|+|.||+.++
T Consensus       142 i~D~vFSlDSV~Aa~g~~~--------~~~im~~a~i~aI~~m~~aa~~l-~~ll~r~p~l~~~~~~iL~~IG~kli~~~  212 (254)
T COG0861         142 LADLVFSLDSVIAAVGMAG--------HPFVMVTAVIFAILVMRFAAFLL-ARLLERHPTLKYLALVILLFIGVKLILEG  212 (254)
T ss_pred             HHHHHHhhhHHHHHHHHhc--------CchHHHHHHHHHHHHHHHHHHHH-HHHHHHchHHHHHHHHHHHHHHHHHHHhh
Confidence            7889999999998887774        55789999999995 77765544 46788999999999999999999999875

>TIGR00427 membrane protein, MarC family

Probab=96.63  E-value=0.019  Score=51.26  Aligned_cols=71  Identities=14%  Similarity=0.319  Sum_probs=62.8

Q ss_pred             hchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHhhhhhcc
Q 024079          158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASE  230 (273)
Q Consensus       158 SvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f----~wI~~ifGafLL~tg~K~~~~~  230 (273)
                      -..|+-+|....+  +.++++|+|+.....+.|.+.=++|.++|-.+++.|    +-....||+.|+.+|++|+..+
T Consensus        20 Pig~ipvfl~lt~--~~~~~~r~~ia~~~~l~a~~ill~f~~~G~~iL~~fgIsl~afrIaGGiiL~~ia~~ml~~~   94 (201)
T TIGR00427        20 PIGNIPIFISLTE--YYTAAERNKIAKKANISSFIILLIFLVFGDTILKLFGISIDAFRIAGGILLFTIAMDMLSGE   94 (201)
T ss_pred             cchHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence            4578999999999  489999999999999999998899999999999854    4589999999999999998653

MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.

>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC

Probab=96.62  E-value=0.015  Score=51.80  Aligned_cols=70  Identities=17%  Similarity=0.262  Sum_probs=62.8

Q ss_pred             chhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHhhhhhcc
Q 024079          159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASE  230 (273)
Q Consensus       159 vDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f----~wI~~ifGafLL~tg~K~~~~~  230 (273)
                      ..|+.+|....+  +.++++|+|+..-..+.|.+.=.+|.++|-.+++-|    +-+...||+.|+..|++|+..+
T Consensus        18 ~g~ip~f~~lt~--~~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fgIsl~af~IaGGiiL~~ia~~ml~~~   91 (203)
T PF01914_consen   18 IGNIPIFLSLTK--GMSPKERRRIARRASIIAFIILLIFAFFGQLILNFFGISLPAFRIAGGIILFLIALEMLFGS   91 (203)
T ss_pred             HHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence            578899999999  489999999999999999999999999999999955    4589999999999999999764

These proteins may be transporters. ; GO: 0016021 integral to membrane

>PRK10739 putative antibiotic transporter; Provisional

Probab=96.42  E-value=0.031  Score=50.06  Aligned_cols=71  Identities=18%  Similarity=0.295  Sum_probs=62.7

Q ss_pred             hchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHhhhhhcc
Q 024079          158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASE  230 (273)
Q Consensus       158 SvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f----~wI~~ifGafLL~tg~K~~~~~  230 (273)
                      -..|+-+|..+.+  +.++++|+|+..-..+.|.+.=++|.++|-.+++-|    +-....||+.|+..|++|+.++
T Consensus        17 Pig~ipiflslt~--~~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fGIsl~afrIAGGilL~~ial~ml~~~   91 (197)
T PRK10739         17 PLGNLPIFMSVLK--HLEPKRRRAIMIRELLIALLVMLVFLFAGEKILAFLNLRTETVSISGGIILFLIAIKMIFPS   91 (197)
T ss_pred             HhhHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence            3578999999998  489999999999999999988889999999999855    4589999999999999999765

>PRK10323 cysteine/O-acetylserine exporter; Provisional

Probab=96.39  E-value=0.072  Score=46.37  Aligned_cols=69  Identities=10%  Similarity=0.072  Sum_probs=48.4

Q ss_pred             hhchhHHHHHHHhCcCCCChhhhh-HHHHHHHHHHHHHHHHHHHHHH-HHHHhhhH----HHHHHHHHHHHHHhhhhhcc
Q 024079          157 LSVDNLFVFVLIFKYFKVPVMYQN-RVLSYGIAGAIVFRLSLILLGT-ATLQRFEA----VNLVLAGILLFSSFKLFASE  230 (273)
Q Consensus       157 LSvDNlfVfalIf~~FkVP~~~Q~-RvL~~GI~gAiv~RiIfI~~G~-~Li~~f~w----I~~ifGafLL~tg~K~~~~~  230 (273)
                      =+-||+++...-.++ +    .|+ -....|+..+.+.=+++...|. .++++++|    +.++|+++|+|.|+|+++.+
T Consensus        20 PGP~~~~v~~~~~~~-G----~r~a~~~~~G~~~g~~~~~~~~~~g~~~l~~~~p~~~~vlk~~Ga~YLlyLg~~~~~s~   94 (195)
T PRK10323         20 PGPNNILALSSATSH-G----FRQSTRVLAGMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWAGAAYIVWLAWKIATSP   94 (195)
T ss_pred             CChHHHHHHHHHHHh-C----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            377999999876653 1    122 2355677777766555555566 56665554    78999999999999999864

>PRK11111 hypothetical protein; Provisional

Probab=96.34  E-value=0.035  Score=50.25  Aligned_cols=69  Identities=14%  Similarity=0.190  Sum_probs=60.9

Q ss_pred             chhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHhhhhhc
Q 024079          159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFAS  229 (273)
Q Consensus       159 vDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f----~wI~~ifGafLL~tg~K~~~~  229 (273)
                      +.|+-+|....+  +.++++|+|+.....+.|.+.=++|.++|-++++-|    +-....||+.|+.+|++|+..
T Consensus        24 ig~ipiflslt~--~~s~~~r~~ia~~a~l~a~~ill~f~~~G~~iL~~fGIsl~afrIaGGiiL~~ial~Ml~g   96 (214)
T PRK11111         24 VGILPVFISMTS--HQTAAERNKTNLTANLSVAIILLISLFLGDFILNLFGISIDSFRIAGGILVVTIAMSMISG   96 (214)
T ss_pred             chhHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            568889999888  479999999999999999988889999999999854    458999999999999999964

>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]

Probab=96.02  E-value=0.042  Score=49.61  Aligned_cols=72  Identities=24%  Similarity=0.310  Sum_probs=63.7

Q ss_pred             hhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHhhhhhcc
Q 024079          157 LSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASE  230 (273)
Q Consensus       157 LSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f----~wI~~ifGafLL~tg~K~~~~~  230 (273)
                      =...|+-+|..+.+.  .|++.|+|+..-..+.|.+.=.+|.++|-++++-|    +-....||..|.+.|++|+..+
T Consensus        19 dP~G~ipvf~slt~~--~~~~~r~~v~~ra~i~a~~ill~f~~~G~~il~~fgIsi~a~rIAGGilLf~ia~~ml~~~   94 (203)
T COG2095          19 DPIGNLPVFISLTKG--LSPEERNRVALRASIIALLILLVFLLLGEGILRFFGISIDAFRIAGGILLFLIALRMLFGP   94 (203)
T ss_pred             CCCchhHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHhhhHHHHHHHHHHhcCC
Confidence            357899999999995  89999999999999999998899999999999844    3588999999999999998764

>PRK09304 arginine exporter protein; Provisional

Probab=95.67  E-value=0.13  Score=45.08  Aligned_cols=78  Identities=18%  Similarity=0.144  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhH----HHHHHHHHHHH
Q 024079          147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTA-TLQRFEA----VNLVLAGILLF  221 (273)
Q Consensus       147 f~tgylLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~-Li~~f~w----I~~ifGafLL~  221 (273)
                      ++.|+.+-..-+-||+++...-.+.      .+.-....|+..+.++=+....+|.. +++.++|    +.++|++||+|
T Consensus         9 ~~~g~~~~~tPGP~~~~v~~~~~~~------~~~~~~~~Gi~~g~~~~~~la~~Gl~~Ll~~~p~~~~~l~~~Ga~YLly   82 (207)
T PRK09304          9 FALGAAMILPLGPQNAFVMNQGIRR------QYHLMIALLCALSDLVLICAGIFGGSALLMQSPWLLALVTWGGVAFLLW   82 (207)
T ss_pred             HHHHHHHHhccChHHHHHHHHHHcc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456666777778999999875541      12345556666666666666666665 4666665    78899999999


Q ss_pred             HHhhhhhcc
Q 024079          222 SSFKLFASE  230 (273)
Q Consensus       222 tg~K~~~~~  230 (273)
                      .|+|+++++
T Consensus        83 Lg~~~~rs~   91 (207)
T PRK09304         83 YGFGAFKTA   91 (207)
T ss_pred             HHHHHHHHh
Confidence            999999864

>PRK10229 threonine efflux system; Provisional

Probab=95.59  E-value=0.15  Score=44.12  Aligned_cols=77  Identities=14%  Similarity=0.148  Sum_probs=51.9

Q ss_pred             HHHHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHhhh----HHHHHHHHHHHHHHh
Q 024079          150 GYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTA-TLQRFE----AVNLVLAGILLFSSF  224 (273)
Q Consensus       150 gylLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~-Li~~f~----wI~~ifGafLL~tg~  224 (273)
                      +.++-.+=+-||++++..-.++ +   ..+--....|+..+...=+++..+|.. +++.++    .+.++|++||+|.|+
T Consensus        12 ~~~~~~sPGP~~~~vi~~~~~~-G---~~~~~~~~~G~~~g~~i~~~l~~~Gl~~ll~~~p~~~~~l~~~Ga~yLlylg~   87 (206)
T PRK10229         12 HIVALMSPGPDFFFVSQTAVSR-S---RKEAMMGVLGITCGVMVWAGVALLGLHLILEKMAWLHTIIMVGGGLYLCWMGY   87 (206)
T ss_pred             HHHHhcCCCchhHHHHHHHHhc-c---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            3456666778999998886664 1   112223445666666666666666774 555554    478999999999999


Q ss_pred             hhhhcc
Q 024079          225 KLFASE  230 (273)
Q Consensus       225 K~~~~~  230 (273)
                      ++++++
T Consensus        88 ~~~~~~   93 (206)
T PRK10229         88 QMLRGA   93 (206)
T ss_pred             HHHHhc
Confidence            999854

>TIGR03718 R_switched_Alx integral membrane protein, TerC family

Probab=95.53  E-value=0.041  Score=52.62  Aligned_cols=70  Identities=23%  Similarity=0.230  Sum_probs=57.5

Q ss_pred             HHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhcc
Q 024079          152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIV-FRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASE  230 (273)
Q Consensus       152 lLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv-~RiIfI~~G~~Li~~f~wI~~ifGafLL~tg~K~~~~~  230 (273)
                      +.+.+-|+||+.....+.+.        +-+.+-|-+.|++ +|.+..+ -..++++|+++.+.++++|.++|.||+.++
T Consensus       200 ~~DlvFslDSIpAi~aiT~d--------~~iV~tsnifaIlgLR~lyf~-l~~ll~rf~~L~~~~a~iL~fIGvkmll~~  270 (302)
T TIGR03718       200 TTDLIFAVDSIPAIFAITQD--------PFIVFTSNIFAILGLRSLYFL-LAGLLERFHYLKYGLAVILVFIGVKMLLHA  270 (302)
T ss_pred             HHHHHHhhccHHHHHHhhcC--------CeEEehHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence            67889999999998888763        3456666666665 9988666 556789999999999999999999999853

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.

>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]

Probab=95.36  E-value=0.2  Score=44.38  Aligned_cols=77  Identities=25%  Similarity=0.293  Sum_probs=50.6

Q ss_pred             HHHHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHh----hhHHHHHHHHHHHHHHh
Q 024079          150 GYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQR----FEAVNLVLAGILLFSSF  224 (273)
Q Consensus       150 gylLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~-~Li~~----f~wI~~ifGafLL~tg~  224 (273)
                      ..++-.+=+=||+.|+..-.+.    -..+--..-.|+..+.+.=.+...+|. .++..    |..+.++|+++|+|.|+
T Consensus        13 ~~~~~~~PGP~~~~v~~~~~~~----G~~~g~~~~~G~~~G~~v~~~l~~~Gl~all~~~~~~f~~lk~~GaaYL~ylg~   88 (208)
T COG1280          13 ALVLAATPGPDNLLVLARSLSR----GRRAGLATALGIALGDLVHMLLAALGLAALLATSPALFTVLKLAGAAYLLYLGW   88 (208)
T ss_pred             HHHHhcCCCccHHHHHHHHHHh----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            3345555677999998876662    112223334455555556666666674 55554    44589999999999999


Q ss_pred             hhhhcc
Q 024079          225 KLFASE  230 (273)
Q Consensus       225 K~~~~~  230 (273)
                      |+++.+
T Consensus        89 ~~~ra~   94 (208)
T COG1280          89 KALRAG   94 (208)
T ss_pred             HHHhcc
Confidence            999864

>TIGR00948 2a75 L-lysine exporter

Probab=95.17  E-value=0.16  Score=43.11  Aligned_cols=67  Identities=15%  Similarity=0.044  Sum_probs=47.8

Q ss_pred             hchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHhh----hHHHHHHHHHHHHHHhhhhhcc
Q 024079          158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTA-TLQRF----EAVNLVLAGILLFSSFKLFASE  230 (273)
Q Consensus       158 SvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~-Li~~f----~wI~~ifGafLL~tg~K~~~~~  230 (273)
                      +-||++|+..-.+.      .+--....|+..+...=+++..+|.. +++.+    ..+.++||+||+|.|+|+++++
T Consensus         6 GP~~~~vi~~~~~~------~~g~~~~~G~~~g~~i~~~~~~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~~~r~~   77 (177)
T TIGR00948         6 GAQNAFVLRQGIRR------EHVLLIVALCCICDLVLIAAGVFGVAALLAASPILLAVLTWGGALFLLWYGFLAAKTA   77 (177)
T ss_pred             cchHHHHHHHHHcc------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56888888887762      12233556666666677677777775 55544    4589999999999999999864

>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family

Probab=94.42  E-value=0.22  Score=44.77  Aligned_cols=72  Identities=21%  Similarity=0.294  Sum_probs=46.4

Q ss_pred             hhchhHHHHHHHhCcCCCChhhhhHHHHHH-HHHHHHHH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhccC
Q 024079          157 LSVDNLFVFVLIFKYFKVPVMYQNRVLSYG-IAGAIVFR--LSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEE  231 (273)
Q Consensus       157 LSvDNlfVfalIf~~FkVP~~~Q~RvL~~G-I~gAiv~R--iIfI~~G~~Li~~f~wI~~ifGafLL~tg~K~~~~~e  231 (273)
                      =.+|+++|.+..|+.  .+...|+|-..+| .+|..++=  .++...|..++- =+|+.-+.|+.=++.|+|.+.++|
T Consensus         4 TniDd~~iL~~~F~~--~~~~~~~~~I~~GqylG~~~Lv~~Sl~~~~~l~~ip-~~wiLGlLGliPI~lGi~~l~~~~   78 (191)
T PF03596_consen    4 TNIDDIVILLLFFAQ--VKTRFRRRQIVIGQYLGFTILVLASLLGAFGLLFIP-PEWILGLLGLIPIYLGIKALFSGE   78 (191)
T ss_pred             ecHHHHHHHHHHHhc--ccCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHcCC
Confidence            368999999999996  5555566777777 33332221  111222322221 269989999999999999776543

To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.

>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional

Probab=94.37  E-value=0.76  Score=39.88  Aligned_cols=73  Identities=11%  Similarity=0.134  Sum_probs=48.3

Q ss_pred             HHHHHhhchhHHHHHHHhCcCCCChhhhhHHH--HHHHHHHHHHHHHHHHHHHH-HHHhhh----HHHHHHHHHHHHHHh
Q 024079          152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVL--SYGIAGAIVFRLSLILLGTA-TLQRFE----AVNLVLAGILLFSSF  224 (273)
Q Consensus       152 lLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL--~~GI~gAiv~RiIfI~~G~~-Li~~f~----wI~~ifGafLL~tg~  224 (273)
                      ++=.+=+-||+.|+..-.+.      -+++.+  ..|+..+...=++...+|.. +++.++    .+.++|++||+|.|+
T Consensus        15 ~~~~sPGP~~~~v~~~~~~~------G~r~~~~~~~G~~~g~~v~~~~~~~Gl~~l~~~~p~~~~~lk~~Ga~YL~~lg~   88 (205)
T PRK10520         15 ILSLSPGSGAINTMSTSISH------GYRGAVASIAGLQTGLAIHIVLVGVGLGALFSQSLLAFEVLKWAGAAYLIWLGI   88 (205)
T ss_pred             HHhcCCchhHHHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            34445566888888765542      123333  34666666666666666665 555444    488999999999999


Q ss_pred             hhhhcc
Q 024079          225 KLFASE  230 (273)
Q Consensus       225 K~~~~~  230 (273)
                      |+++++
T Consensus        89 ~~~~s~   94 (205)
T PRK10520         89 QQWRAA   94 (205)
T ss_pred             HHHhCC
Confidence            999864

>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine

Probab=94.30  E-value=0.35  Score=40.95  Aligned_cols=68  Identities=24%  Similarity=0.211  Sum_probs=42.8

Q ss_pred             hhchhHHHHHHHhCcCCCChhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHh-h----hHHHHHHHHHHHHHHhhhhhc
Q 024079          157 LSVDNLFVFVLIFKYFKVPVMYQNRVL--SYGIAGAIVFRLSLILLGTATLQR-F----EAVNLVLAGILLFSSFKLFAS  229 (273)
Q Consensus       157 LSvDNlfVfalIf~~FkVP~~~Q~RvL--~~GI~gAiv~RiIfI~~G~~Li~~-f----~wI~~ifGafLL~tg~K~~~~  229 (273)
                      .+-+|+.++..-.++      -+++.+  ..|+..+...=++....|...+.+ .    .++.++||++|+|.|++++++
T Consensus         7 PGP~~~~~i~~~~~~------G~~~~~~~~~G~~~~~~i~~~~~~~g~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~   80 (191)
T PF01810_consen    7 PGPVNLLVISNGLRK------GFKAGLPVALGAALGDLIYILLAVFGLSALLKSSPWLFMILKLLGALYLLYLGYKLLRS   80 (191)
T ss_pred             CCHHHHHHHHHHHHh------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            345777777765552      122333  334444444555555566665533 3    458999999999999999987


Q ss_pred             c
Q 024079          230 E  230 (273)
Q Consensus       230 ~  230 (273)
                      +
T Consensus        81 ~   81 (191)
T PF01810_consen   81 K   81 (191)
T ss_pred             c
Confidence            4

A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane

>COG1971 Predicted membrane protein [Function unknown]

Probab=93.77  E-value=0.54  Score=42.61  Aligned_cols=81  Identities=16%  Similarity=0.135  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHH
Q 024079          146 EFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF-----EAVNLVLAGILL  220 (273)
Q Consensus       146 ef~tgylLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f-----~wI~~ifGafLL  220 (273)
                      ++++..++-.++|.||.-|=.. -..-+.+++ -+..|..|+...+ +-.++.++|..+=+-+     .|-.++++++|+
T Consensus         2 ~~~sllllA~alsmDAFav~l~-~G~~~~k~~-~~~~L~ia~~fG~-f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~   78 (190)
T COG1971           2 NIISLLLLAIALSMDAFAVSLG-KGLAKHKIR-FKEALVIALIFGV-FQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLI   78 (190)
T ss_pred             cHHHHHHHHHHHhhHHHHHHHH-hhhhhcccc-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567778899999999655332 221122222 2455666665554 5667777776554433     366788999999


Q ss_pred             HHHhhhhhc
Q 024079          221 FSSFKLFAS  229 (273)
Q Consensus       221 ~tg~K~~~~  229 (273)
                      +.|.+|+++
T Consensus        79 ~lG~~mI~e   87 (190)
T COG1971          79 ILGLKMIIE   87 (190)
T ss_pred             HHHHHHHHH
Confidence            999999876

>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein

Probab=93.62  E-value=0.65  Score=39.29  Aligned_cols=65  Identities=17%  Similarity=0.182  Sum_probs=43.0

Q ss_pred             chhHHHHHHHhCcCCCChhhhhHH--HHHHHHHHHHHHHHHHHHHHH-HHHhhh----HHHHHHHHHHHHHHhhhhhc
Q 024079          159 VDNLFVFVLIFKYFKVPVMYQNRV--LSYGIAGAIVFRLSLILLGTA-TLQRFE----AVNLVLAGILLFSSFKLFAS  229 (273)
Q Consensus       159 vDNlfVfalIf~~FkVP~~~Q~Rv--L~~GI~gAiv~RiIfI~~G~~-Li~~f~----wI~~ifGafLL~tg~K~~~~  229 (273)
                      -||++++..-.+.     . +++.  ...|+..+.+.=++...+|.. +++.++    .+.++||++|+|.|++++++
T Consensus         4 P~~~~~~~~~~~~-----G-~~~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~~   75 (185)
T TIGR00949         4 PNFFVVMQTSLSS-----G-RRAGVLTILGIALGDAIWIVLSLLGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLRK   75 (185)
T ss_pred             cchHHHHHHHHHh-----h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4677777665442     2 2333  445566666666666666654 555444    48899999999999999984

>PRK10958 leucine export protein LeuE; Provisional

Probab=93.61  E-value=0.63  Score=41.11  Aligned_cols=70  Identities=17%  Similarity=0.164  Sum_probs=47.4

Q ss_pred             HHhhchhHHHHHHHhCcCCCChhhhhHHH--HHHHHHHHHHHHHHHHHHHHH-HHhh----hHHHHHHHHHHHHHHhhhh
Q 024079          155 QSLSVDNLFVFVLIFKYFKVPVMYQNRVL--SYGIAGAIVFRLSLILLGTAT-LQRF----EAVNLVLAGILLFSSFKLF  227 (273)
Q Consensus       155 ~sLSvDNlfVfalIf~~FkVP~~~Q~RvL--~~GI~gAiv~RiIfI~~G~~L-i~~f----~wI~~ifGafLL~tg~K~~  227 (273)
                      .+=+-||++|+..-.+.      -+++.+  ..|+..+.+.=++...+|... ++.+    ..+.++||++|+|.|+|.+
T Consensus        22 ~sPGP~~~~v~~~~~~~------G~r~~~~~~~G~~~g~~~~~~~~~~G~~~l~~~~p~~~~~l~~~G~~yL~~la~~~~   95 (212)
T PRK10958         22 LLPGPNSLYVLSTAARR------GVKAGYRAACGVFIGDAVLMFLAAAGVASLLKATPLLFNVVKYLGAAYLLYLGVKML   95 (212)
T ss_pred             cCCchHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677999998886653      123333  345555555666666666654 4344    4589999999999999999


Q ss_pred             hcc
Q 024079          228 ASE  230 (273)
Q Consensus       228 ~~~  230 (273)
                      +++
T Consensus        96 ~~~   98 (212)
T PRK10958         96 RAA   98 (212)
T ss_pred             Hhh
Confidence            864

>PRK11469 hypothetical protein; Provisional

Probab=92.42  E-value=1.4  Score=39.08  Aligned_cols=81  Identities=14%  Similarity=0.059  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHhh-hHHHHHHHHHHH
Q 024079          146 EFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILL----GTATLQRF-EAVNLVLAGILL  220 (273)
Q Consensus       146 ef~tgylLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~----G~~Li~~f-~wI~~ifGafLL  220 (273)
                      ++++..++=.+||+||..|=...=.  +.++...++.+...+..+. +-.+++++    |..+-+.. ++-..+++..|+
T Consensus         2 ~~~~i~llaialsmDaF~v~ia~G~--~~~~~~~~~~~~~~l~~g~-~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~   78 (188)
T PRK11469          2 NITATVLLAFGMSMDAFAASIGKGA--TLHKPKFSEALRTGLIFGA-VETLTPLIGWGMGMLASRFVLEWNHWIAFVLLI   78 (188)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhh--cccCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566778889999999866544221  2333333444444444443 34555554    44333221 244577888999


Q ss_pred             HHHhhhhhc
Q 024079          221 FSSFKLFAS  229 (273)
Q Consensus       221 ~tg~K~~~~  229 (273)
                      +.|.+|+++
T Consensus        79 ~lG~~mi~e   87 (188)
T PRK11469         79 FLGGRMIIE   87 (188)
T ss_pred             HHHHHHHHH
Confidence            999999875

>COG1279 Lysine efflux permease [General function prediction only]

Probab=91.76  E-value=1.9  Score=39.57  Aligned_cols=71  Identities=23%  Similarity=0.249  Sum_probs=48.5

Q ss_pred             HHHHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhH----HHHHHHHHHHH
Q 024079          150 GYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT----ATLQRFEA----VNLVLAGILLF  221 (273)
Q Consensus       150 gylLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~----~Li~~f~w----I~~ifGafLL~  221 (273)
                      |.-+=..+++.|+||+-.-.+        |+++|..-++ +.+.=+++|.+|+    .++++-+|    +.+.|.+||+|
T Consensus        12 ~~~LI~pIGaQNaFVl~QGi~--------r~~~l~~~~~-c~i~D~~Li~~gv~G~~~li~~~p~l~~i~~~~G~~FLl~   82 (202)
T COG1279          12 GASLILPIGAQNAFVLNQGIR--------REYVLPIALL-CAISDIVLISAGVFGVGALIAKSPWLLLIVRWGGAAFLLY   82 (202)
T ss_pred             HHHHHHhccchhHHHHHHHHh--------hccHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence            334556789999999987544        4666655444 4455666665543    34444455    67888999999


Q ss_pred             HHhhhhhc
Q 024079          222 SSFKLFAS  229 (273)
Q Consensus       222 tg~K~~~~  229 (273)
                      .|++.+++
T Consensus        83 yg~~a~~~   90 (202)
T COG1279          83 YGLLALKS   90 (202)
T ss_pred             HHHHHHHh
Confidence            99999876

>PRK11469 hypothetical protein; Provisional

Probab=90.49  E-value=3.7  Score=36.47  Aligned_cols=98  Identities=18%  Similarity=0.195  Sum_probs=60.6

Q ss_pred             HHHHHHHHHhhHhhhhc----Chh-------hHHHHHHHHHHHHHhhchhHHH-HHHHhCcCCCChhhhhHHHHHHHHHH
Q 024079          123 FCVSTAVAFGLGVGFIE----GAS-------KASEFFAGYILEQSLSVDNLFV-FVLIFKYFKVPVMYQNRVLSYGIAGA  190 (273)
Q Consensus       123 ~wI~LAllFg~~i~~~~----G~~-------~a~ef~tgylLE~sLSvDNlfV-falIf~~FkVP~~~Q~RvL~~GI~gA  190 (273)
                      =|++..+++.+++|...    +.+       ....+....++=.++|+||+-| +..-+.  ++|.  -.-++..|+...
T Consensus        70 ~~i~~~lL~~lG~~mi~e~~~~~~~~~~~~~~~~~~~~~l~LaiAtSiDAlavGi~~~~~--g~~~--~~~~~~ig~~s~  145 (188)
T PRK11469         70 HWIAFVLLIFLGGRMIIEGFRGADDEDEEPRRRHGFWLLVTTAIATSLDAMAVGVGLAFL--QVNI--IATALAIGCATL  145 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHh--hhhH--HHHHHHHHHHHH
Confidence            48888888877777432    111       1123455667888999999988 555554  3432  123344444433


Q ss_pred             HHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHhhhhhc
Q 024079          191 IVFRLSLILLGTATLQRF-----EAVNLVLAGILLFSSFKLFAS  229 (273)
Q Consensus       191 iv~RiIfI~~G~~Li~~f-----~wI~~ifGafLL~tg~K~~~~  229 (273)
                           ++..+|..+=.++     .|..+++|+.|+..|+|++.+
T Consensus       146 -----~~~~~G~~lG~~~g~~~g~~a~~lgG~iLI~iGi~il~~  184 (188)
T PRK11469        146 -----IMSTLGMMVGRFIGSIIGKKAEILGGLVLIGIGVQILWT  184 (188)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 4444444433211     367899999999999999864

>TIGR02840 spore_YtaF putative sporulation protein YtaF

Probab=90.29  E-value=2.7  Score=37.61  Aligned_cols=76  Identities=16%  Similarity=0.135  Sum_probs=43.2

Q ss_pred             HHHHHHHhhchhHHHHH-HHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h-HHHHHHHHHHHHHHhhh
Q 024079          150 GYILEQSLSVDNLFVFV-LIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF-E-AVNLVLAGILLFSSFKL  226 (273)
Q Consensus       150 gylLE~sLSvDNlfVfa-lIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f-~-wI~~ifGafLL~tg~K~  226 (273)
                      ..++=.+||+|+..|=. .=.+.  ++. .-+..+..|+.-+ +|=.+-.++|..+-+.+ . |-.+++++.|++.|.+|
T Consensus         3 i~llaials~Daf~vgi~~G~~~--~~~-~~~~~l~ig~~~~-~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~m   78 (206)
T TIGR02840         3 LLLLAFAVSLDSFGVGIAYGLRK--IKI-PFLSNLIIAVISG-LFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWI   78 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc--CCh-hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH
Confidence            34677899999987733 32232  222 1223344444433 12222223344444333 2 46789999999999999


Q ss_pred             hhc
Q 024079          227 FAS  229 (273)
Q Consensus       227 ~~~  229 (273)
                      +.+
T Consensus        79 i~~   81 (206)
T TIGR02840        79 IYN   81 (206)
T ss_pred             HHH
Confidence            875

This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.

>COG2119 Predicted membrane protein [Function unknown]

Probab=88.77  E-value=1.8  Score=39.40  Aligned_cols=67  Identities=15%  Similarity=0.211  Sum_probs=55.9

Q ss_pred             chhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHhhhhhcc
Q 024079          159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIV-FRLSLILLGTATLQRFE--AVNLVLAGILLFSSFKLFASE  230 (273)
Q Consensus       159 vDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv-~RiIfI~~G~~Li~~f~--wI~~ifGafLL~tg~K~~~~~  230 (273)
                      .|.-+.++++.+.     +||++..+.|+.+|.. |-++-..+|.+..+-++  +..++.|..-+..|+|++.++
T Consensus        17 GDKT~lia~llA~-----r~~~~~v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~l~ed   86 (190)
T COG2119          17 GDKTQLIAMLLAM-----RYRRWPVFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWMLIED   86 (190)
T ss_pred             ccHHHHHHHHHHH-----hcCCchhHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhccc
Confidence            6888888887764     4678889999999995 88888899999888556  788888888888999998875

>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]

Probab=88.24  E-value=3.1  Score=38.18  Aligned_cols=92  Identities=16%  Similarity=0.177  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHH-HHH--HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 024079          146 EFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIA-GAI--VFRLSLILLGTATLQRFEAVNLVLAGILLFS  222 (273)
Q Consensus       146 ef~tgylLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~-gAi--v~RiIfI~~G~~Li~~f~wI~~ifGafLL~t  222 (273)
                      .+.+...+=.+=++|-+++.++.|+.++.  +.|+.=++.|=. |.+  ++-.++..++...+. =.|+.-.+|++=+|.
T Consensus         4 ~~v~sivly~aTaiD~lIiL~l~Far~~~--~k~~~~I~~GQyLGs~~lilaSL~~a~v~~fvp-~e~I~glLGLIPi~L   80 (205)
T COG4300           4 TVVSSIVLYIATAIDLLIILLLFFARRKS--RKDILHIYLGQYLGSVILILASLLFAFVLNFVP-EEWILGLLGLIPIYL   80 (205)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHhcc--cCcEEEEeHHHHHhHHHHHHHHHHHHHHHhhCc-HHHHHHHHhHHHHHH
Confidence            34556666778889999999999997555  334433444422 221  111122222222222 268988999999999


Q ss_pred             HhhhhhccCCCCCCCccH
Q 024079          223 SFKLFASEEDDTDLSDNF  240 (273)
Q Consensus       223 g~K~~~~~ee~~d~~~n~  240 (273)
                      |+|.+..+|+|+|.+.+.
T Consensus        81 Gik~l~~~d~d~e~~~~e   98 (205)
T COG4300          81 GIKVLILGDDDGEEEAKE   98 (205)
T ss_pred             hhHHhhcccCcCchhhhH
Confidence            999977655544433333

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=88.08  E-value=13  Score=32.32  Aligned_cols=71  Identities=20%  Similarity=0.105  Sum_probs=45.4

Q ss_pred             HHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHh
Q 024079          152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA--VNLVLAGILLFSSF  224 (273)
Q Consensus       152 lLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f~w--I~~ifGafLL~tg~  224 (273)
                      +.-..-+.-+.....++.+.  .|+++|.++.-+--.+.-+-.++...++..+.+.+.|  .+++.+++.+..++
T Consensus        94 l~g~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~i  166 (352)
T PF07690_consen   94 LLGIGSGFFSPASNALIADW--FPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAI  166 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC--CCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccc--chhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhh
Confidence            33333456666677777776  6777777776555555555667777788888766555  66666666555544

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=88.00  E-value=17  Score=31.60  Aligned_cols=56  Identities=13%  Similarity=-0.015  Sum_probs=33.3

Q ss_pred             HHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024079          153 LEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA  210 (273)
Q Consensus       153 LE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f~w  210 (273)
                      .-..-+.-+....+++...  .|+++|.++.-+--.+.-+--++-..++..+++.+.|
T Consensus       102 ~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~  157 (365)
T TIGR00900       102 LAIAQAFFTPAYQAMLPDL--VPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGI  157 (365)
T ss_pred             HHHHHHHHHHHHHHHHHhc--CCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            3344455555566666665  6777666665444344444556666777777775554

>COG1971 Predicted membrane protein [Function unknown]

Probab=87.60  E-value=10  Score=34.55  Aligned_cols=100  Identities=19%  Similarity=0.151  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHhhHhhhhc----Chhh--------H-HHHHHHHHHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHH
Q 024079          122 AFCVSTAVAFGLGVGFIE----GASK--------A-SEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIA  188 (273)
Q Consensus       122 ~~wI~LAllFg~~i~~~~----G~~~--------a-~ef~tgylLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~  188 (273)
                      .=|++-+++..+++|...    +.+.        . ..|....++-.+.|.||+-|=+-..-   ++-.-+.-+...|++
T Consensus        69 ~~wigf~lL~~lG~~mI~e~f~~~~~~~~~~~~~~~~~~~~~~~laiatSidal~vG~~~a~---lgv~i~~~av~iG~~  145 (190)
T COG1971          69 AHWIGFVLLIILGLKMIIEGFKNEEDEFVDPAEKHDLNFKELILLAIATSIDALAVGVGLAF---LGVNILLAAVAIGLI  145 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhchhhcchhcccccchhhHHHHHHHHHHHHHHHHHHhhhHHH---hcchHHHHHHHHHHH
Confidence            456777777766666532    2111        1 12777888999999999987665443   344445566666644


Q ss_pred             HHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHhhhhhc
Q 024079          189 GAIVFRLSLILLGTATLQRF-----EAVNLVLAGILLFSSFKLFAS  229 (273)
Q Consensus       189 gAiv~RiIfI~~G~~Li~~f-----~wI~~ifGafLL~tg~K~~~~  229 (273)
                      -.     ++..+|..+=.++     .+..+++|+.|+..|.|.+.+
T Consensus       146 T~-----il~~~G~~IG~~~g~~~g~~ae~lgGiiLI~~G~~iL~~  186 (190)
T COG1971         146 TL-----ILSALGAIIGRKLGKFLGKYAEILGGIILIGIGVKILLE  186 (190)
T ss_pred             HH-----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            32     3344444433322     368899999999999998864

>TIGR00779 cad cadmium resistance transporter (or sequestration) family protein

Probab=87.35  E-value=1  Score=40.87  Aligned_cols=74  Identities=19%  Similarity=0.193  Sum_probs=46.9

Q ss_pred             hchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhccCCCC
Q 024079          158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVF---RLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDT  234 (273)
Q Consensus       158 SvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~---RiIfI~~G~~Li~~f~wI~~ifGafLL~tg~K~~~~~ee~~  234 (273)
                      .+|.++|....|+.  +. +.|+|-..+|=......   =.++...|..++- =+|+.-+.|+.=++.|+|-+.++|||+
T Consensus         5 niDdi~vL~~fF~~--~~-~~~~~~IviGqylGf~~Lv~~Sl~~a~gl~~iP-~~wIlGlLGliPI~lGi~~l~~~~~~~   80 (193)
T TIGR00779         5 GVDLLVILLIFFAR--AK-RKEYKDIYIGQYLGSIILILVSLLLAFGVNLIP-EKWVLGLLGLIPIYLGIKVAIKGECDE   80 (193)
T ss_pred             cHHHHHHHHHHHHH--cc-CCCeeEEEEeHHHHHHHHHHHHHHHHHHHHhCC-HHHHHhHHhHHHHHHHHHHHhcccccc
Confidence            57999999999985  55 66666555554333321   1122233433332 269988999999999999877655443


Q ss_pred             C
Q 024079          235 D  235 (273)
Q Consensus       235 d  235 (273)
                      |
T Consensus        81 ~   81 (193)
T TIGR00779        81 D   81 (193)
T ss_pred             c
Confidence            3

These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, PubMed:10943564).

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=83.30  E-value=27  Score=33.66  Aligned_cols=32  Identities=22%  Similarity=0.319  Sum_probs=25.0

Q ss_pred             ccchhhhhhhhHHHHHHHHHHHHhhHhhhhcC
Q 024079          109 EGRESYTSSVKTVAFCVSTAVAFGLGVGFIEG  140 (273)
Q Consensus       109 ~~~is~keA~~wS~~wI~LAllFg~~i~~~~G  140 (273)
                      +.++|.|+++...++...+|++.+.++.+..|
T Consensus        89 ~G~is~~~al~~~~~l~~la~~lg~~L~~~~~  120 (331)
T PRK12392         89 SGRLSEKEALWNSIIVLLLAIGLGVWLGLHIG  120 (331)
T ss_pred             cCCcCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            45788999999999888888888776655444

>TIGR00901 2A0125 AmpG-related permease

Probab=81.12  E-value=41  Score=30.16  Aligned_cols=58  Identities=7%  Similarity=-0.152  Sum_probs=37.8

Q ss_pred             HHHHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024079          150 GYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFE  209 (273)
Q Consensus       150 gylLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f~  209 (273)
                      +.++...-+..+..+.+++.+.  .|+++|.++.-+-..+.-+.-++...++..+.+.+.
T Consensus        90 ~~~~~~~~~~~~~~~~a~~~~~--~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g  147 (356)
T TIGR00901        90 AFLIAFFSATQDIALDAWRLEI--LSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEF  147 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh--CCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            3355566666777778888786  588888877766555555555555666666666554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00