Citrus Sinensis ID: 024093

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270--
Protein Sequence
MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVCSVCHIILKTYDSSLSFILLFVGNFQVRGVQKENKSLQDGFVSKISCLSSIFLITEDIKQRIKTFENNEILVFIQIINAKEEDPHYEYELVDNGEHCDSDFGFQNEGPGIFALRLQPN
Secondary Structure (PSIPRED)
cccccccEEEccccccccccccccccccccccHHHHccccccEEEEEEEccccEEEcccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEEEEcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEcccccEEEEEcHcccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHccccccccccccccccccccccHHHHHccccccHHHHcHHHHHHHHHHHHcccccccEEEEEEccccccccccccccccccEEEEEEccc
Coil and Loop (DISEMBL)
MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTakaheyispstttKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVCSVCHIILKTYDSSLSFILLFVGNFQVRGVQKENKSLQDGFVSKISCLSSIFLITEDIKQRIKTFENNEILVFIQIINakeedphyeyelvdngehcdsdfgfqnegpgifalrlqpn
Flexible Loop (DISEMBL)
mgrgkmemkrienatnrqvtfskrrnglfKKARELTILCDAKVSILICSSTAkaheyispstttkqLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVCSVCHIILKTYDSSLSFILLFVGNFQVRGVQKENKSLQDGFVSKISCLSSIFLITEDIKQRIKTFENNEILVFIQIINAKEEDPHYEYELVDNGEHCDSDFGFQNEGPGIFALRLQPN
Low Complexity Region (SEG)
MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVCSVCHIILKTYDSSLSFILLFVGNFQVRGVQKENKSLQDGFVSKISCLSSIFLITEDIKQRIKTFENNEILVFIQIINAKEEDPHYEYELVDNGEHCDSDFGFQNEGPGIFALRLQPN
Disordered region (IsUnstruct)
************************RNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVCSVCHIILKTYDSSLSFILLFVGNFQVRGVQKENKSLQDGFVSKISCLSSIFLITEDIKQRIKTFENNEILVFIQIINAKEEDPHYEYELVDNGEHCDSDFGFQNEGPGIFAL*****
Disordered Region (DISOPRED)
MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLR************ENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVC*********************************************************************************D*HYEYELVDNGEHCDSDFGFQNEGPGIFALRLQP*
Disordered Region (DISEMBL)
*********RIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVCSVCHIILKTYDSSLSFILLFVGNFQVRGVQKENKSLQDGFVSKISCLSSIFLITEDIKQRIKTFENNEILVFIQIINAKEEDPHYEYELVDNGEHCDSDFGFQNEGPGIFALRLQPN
Disordered Region (DISPRO)
****KMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVCSVCHIILKTYDSSLSFILLFVGNFQVRGVQKENKSLQDGFVSKISCLSSIFLITEDIKQRIKTFENNEILVFIQIINAKEEDPHYEYELVDNGEHCDSDFGFQNEGPGIFALRLQP*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVCSVCHIILKTYDSSLSFILLFVGNFQVRGVQKENKSLQDGFVSKISCLSSIFLITEDIKQRIKTFENNEILVFIQIINAKEEDPHYEYELVDNGEHCDSDFGFQNEGPGIFALRLQPN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	272	2.2.26 [Sep-21-2011]
Q07472	231	Floral homeotic protein P	N/A	no	0.588	0.692	0.656	2e-54
P23706	227	Floral homeotic protein D	N/A	no	0.580	0.696	0.631	2e-52
P35632	232	Floral homeotic protein A	yes	no	0.562	0.659	0.549	2e-42
Q944S9	224	MADS-box transcription fa	yes	no	0.566	0.687	0.538	6e-42
Q42498	214	MADS-box protein CMB2 OS=	N/A	no	0.566	0.719	0.493	4e-37
Q07474	212	Floral homeotic protein P	N/A	no	0.525	0.674	0.468	5e-32
Q03378	215	Floral homeotic protein G	N/A	no	0.481	0.609	0.458	5e-28
Q8VWM8	259	MADS-box protein ZMM17 OS	N/A	no	0.544	0.571	0.421	8e-28
Q6H711	260	MADS-box transcription fa	no	no	0.544	0.569	0.421	5e-27
Q9XGJ4	237	MADS-box protein GGM13 OS	N/A	no	0.562	0.645	0.418	1e-26

>sp|Q07472|MADS1_PETHY Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1

 Score =  212 bits (540), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 105/160 (65%), Positives = 130/160 (81%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           M RGK+++KRIEN TNRQVT+SKRRNGLFKKA ELT+LCDAKVSI++ SST K HE+ISP
Sbjct: 1   MARGKIQIKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           S TTKQL DLYQKT+ VDLW+SHYEKM E L  +++VNR L+K+IRQRMGESLNDL  E+
Sbjct: 61  SITTKQLFDLYQKTVGVDLWNSHYEKMQEQLRKLKEVNRNLRKEIRQRMGESLNDLNYEQ 120

Query: 121 LTGLEQDILDGLKIIHECKDQVLARQINTFKRKVCSVCHI 160
           L  L +++ + LK+I E K +V+  QI TFK+KV +V  I
Sbjct: 121 LEELMENVDNSLKLIRERKYKVIGNQIETFKKKVRNVEEI 160

Transcription factor involved in the genetic control of flower development. Necessary for the normal development of petals. Absence of the PMADS1 protein causes transformation of petals into sepals.
Petunia hybrida (taxid: 4102)

>sp|P23706|DEFA_ANTMA Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1

 Score =  205 bits (522), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 101/160 (63%), Positives = 129/160 (80%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           M RGK+++KRIEN TNRQVT+SKRRNGLFKKA EL++LCDAKVSI++ SST K HEYISP
Sbjct: 1   MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           +T TKQL D YQK + VDLWSSHYEKM E+L  + +VNR L+++IRQRMGESLNDL  E+
Sbjct: 61  TTATKQLFDQYQKAVGVDLWSSHYEKMQEHLKKLNEVNRNLRREIRQRMGESLNDLGYEQ 120

Query: 121 LTGLEQDILDGLKIIHECKDQVLARQINTFKRKVCSVCHI 160
           +  L +D+ + LK+I E K +V++ QI+T K+KV +V  I
Sbjct: 121 IVNLIEDMDNSLKLIRERKYKVISNQIDTSKKKVRNVEEI 160

Transcription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo).

Antirrhinum majus (taxid: 4151)

>sp|P35632|AP3_ARATH Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1

 Score =  172 bits (437), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 84/153 (54%), Positives = 117/153 (76%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           M RGK+++KRIEN TNRQVT+SKRRNGLFKKA ELT+LCDA+VSI++ SS+ K HEYISP
Sbjct: 1   MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           +TTTK+++DLYQ    VD+W++ YE+M E    + + NR L+ QI+QR+GE L++L ++E
Sbjct: 61  NTTTKEIVDLYQTISDVDVWATQYERMQETKRKLLETNRNLRTQIKQRLGECLDELDIQE 120

Query: 121 LTGLEQDILDGLKIIHECKDQVLARQINTFKRK 153
           L  LE ++ +  K++ E K + L  QI T K+K
Sbjct: 121 LRRLEDEMENTFKLVRERKFKSLGNQIETTKKK 153

Probable transcription factor involved in the genetic control of flower development. Is required for normal development of petals and stamens in the wild-type flower. Forms an heterodimer with PISTILLATA that is required for autoregulation of both AP3 and PI genes. AP3/PI heterodimer interacts with APETALA1 or SEPALLATA3 to form a ternary complex that could be responsible for the regulation of the genes involved in the flower development. AP3/PI heterodimer activates the expression of NAP.

Arabidopsis thaliana (taxid: 3702)

>sp|Q944S9|MAD16_ORYSJ MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2

 Score =  171 bits (433), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 83/154 (53%), Positives = 109/154 (70%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           MGRGK+E+KRIENATNRQVT+SKRR G+ KKARELT+LCDA+V+I++ SST K HE+ SP
Sbjct: 1   MGRGKIEIKRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           ST  K + D YQ+ +   LW   YE M   L  ++ +NR L+ +IRQRMGE L+ L  +E
Sbjct: 61  STDIKGIFDRYQQAIGTSLWIEQYENMQRTLSHLKDINRNLRTEIRQRMGEDLDGLEFDE 120

Query: 121 LTGLEQDILDGLKIIHECKDQVLARQINTFKRKV 154
           L GLEQ++   LK +   K  V+  Q  T+K+KV
Sbjct: 121 LRGLEQNVDAALKEVRHRKYHVITTQTETYKKKV 154

Probable transcription factor involved in the development of floral organs. Required for normal development of lodicules and stamens (whorls 2 and 3). May function as an heterodimer with MADS4.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q42498|CMB2_DIACA MADS-box protein CMB2 OS=Dianthus caryophyllus GN=CMB2 PE=2 SV=1

 Score =  155 bits (391), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 76/154 (49%), Positives = 108/154 (70%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           MGRGK+E+++IEN TNRQVTFSKRRNG+ KKA+ELT+LCDAKVS+L+ SST K H Y+SP
Sbjct: 1   MGRGKLEIRKIENKTNRQVTFSKRRNGIMKKAQELTVLCDAKVSLLMISSTHKLHHYLSP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
             + K++ D YQK   VDLW   +E+M E    V ++N +L+++I +RMG  L  LTL E
Sbjct: 61  GVSLKKMYDEYQKIEGVDLWRKQWERMQEQHRKVLELNSLLRREISRRMGGDLEGLTLVE 120

Query: 121 LTGLEQDILDGLKIIHECKDQVLARQINTFKRKV 154
           L+ L+Q++ + +  I   K   +  Q  T ++K+
Sbjct: 121 LSALQQEMEEAIIQIRNKKYHTIKNQTGTTRKKI 154

Dianthus caryophyllus (taxid: 3570)

>sp|Q07474|MADS2_PETHY Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1

 Score =  138 bits (347), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 67/143 (46%), Positives = 100/143 (69%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           MGRGK+E+KRIEN++NRQVT+SKRRNG+ KKA+E+T+LCDAKVS++I  ++ K HEY SP
Sbjct: 1   MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFGNSGKMHEYCSP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           STT   +LD YQKT    LW + +E +   +  +++ N  ++ ++R   GE +N L  +E
Sbjct: 61  STTLPDMLDGYQKTSGRRLWDAKHENLSNEIDRIKKENDNMQVKLRHLKGEDINSLNHKE 120

Query: 121 LTGLEQDILDGLKIIHECKDQVL 143
           L  LE+ + +GL  I   + ++L
Sbjct: 121 LMVLEEGLTNGLSSISAKQSEIL 143

Transcription factor involved in the genetic control of flower development.

Petunia hybrida (taxid: 4102)

>sp|Q03378|GLOB_ANTMA Floral homeotic protein GLOBOSA OS=Antirrhinum majus GN=GLO PE=1 SV=1

 Score =  124 bits (312), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 60/131 (45%), Positives = 89/131 (67%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           MGRGK+E+KRIEN++NRQVT+SKRRNG+ KKA+E+++LCDA VS++I +S+ K HE+ SP
Sbjct: 1   MGRGKIEIKRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           STT   +LD Y K     LW   +E +   +  V++ N  ++ ++R   GE +  L  +E
Sbjct: 61  STTLVDMLDHYHKLSGKRLWDPKHEHLDNEINRVKKENDSMQIELRHLKGEDITTLNYKE 120

Query: 121 LTGLEQDILDG 131
           L  LE  + +G
Sbjct: 121 LMVLEDALENG 131

Transcription factor involved in the genetic control of flower development. Acts in conjunction with DEFICIENS (defA).

Antirrhinum majus (taxid: 4151)

>sp|Q8VWM8|M17_MAIZE MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=1

 Score =  124 bits (311), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 67/159 (42%), Positives = 105/159 (66%), Gaps = 11/159 (6%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           MGRGK+E+KRIEN+TNRQVTFSKRR GL KKA EL +LCDA+V ++I SST K  EY SP
Sbjct: 1   MGRGKIEIKRIENSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRI------LKKQIRQRMGESLN 114
           + + ++L++ YQ        +SH+E++  +   + ++ R+      L+  IR+  G+ L+
Sbjct: 61  ACSLRELIEQYQHA-----TNSHFEEINHDQQILLEMTRMKNEMEKLETGIRRYTGDDLS 115

Query: 115 DLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRK 153
            LTL++++ LEQ +   +  +   K Q+L +Q++  +RK
Sbjct: 116 SLTLDDVSDLEQQLEYSVSKVRARKHQLLNQQLDNLRRK 154

Probable transcription factor.

Zea mays (taxid: 4577)

>sp|Q6H711|MAD29_ORYSJ MADS-box transcription factor 29 OS=Oryza sativa subsp. japonica GN=MADS29 PE=2 SV=1

 Score =  121 bits (304), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 67/159 (42%), Positives = 103/159 (64%), Gaps = 11/159 (6%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           MGRGK+E+KRIENATNRQVTFSKRR GL KKA EL +LCDA+V ++I SST K  EY SP
Sbjct: 1   MGRGKIEIKRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRI------LKKQIRQRMGESLN 114
           + + ++L++ YQ      + ++H+E++  +     ++ R+      L   IR+  G+ L+
Sbjct: 61  TCSLRELIEHYQT-----VTNTHFEEINHDQQIFVEMTRMRNEMEKLDGGIRRFTGDDLS 115

Query: 115 DLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRK 153
           +LTL ++  LEQ +   +  +   K Q+L +Q++  +RK
Sbjct: 116 NLTLADINDLEQQLEFSVTKVRARKHQLLNQQLDNLRRK 154

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9XGJ4|GGM13_GNEGN MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1

 Score =  120 bits (300), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/153 (41%), Positives = 96/153 (62%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           MGRGK+E+KRIEN TNRQVTFSKRR GL KKA EL++LCDA++ ++I SS+ K  EY S 
Sbjct: 1   MGRGKIEIKRIENTTNRQVTFSKRRGGLLKKAHELSVLCDAELGLIIFSSSGKLFEYSSA 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           S++ K++++ YQK     +     + +   +  ++  N  L+  IR+ MGE L  LT+ E
Sbjct: 61  SSSMKKIIERYQKVSGARITEYDNQHLYCEMTRMKNENEKLQTNIRRMMGEDLTSLTMTE 120

Query: 121 LTGLEQDILDGLKIIHECKDQVLARQINTFKRK 153
           L  L Q +      +   K+Q++ +Q+   +RK
Sbjct: 121 LHHLGQQLESASSRVRSRKNQLMLQQLENLRRK 153

Probable transcription factor.

Gnetum gnemon (taxid: 3382)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	272
343887324	211	MADS-box protein (CitMADS8) [Citrus unsh	0.775	1.0	0.775	1e-111
116078103	211	MADS-box protein [Citrus unshiu]	0.775	1.0	0.772	1e-110
225458107	226	PREDICTED: floral homeotic protein DEFIC	0.761	0.915	0.466	2e-55
262071557	223	MADS-domain transcription factor, partia	0.713	0.869	0.471	1e-54
315418854	226	AP3 [Actinidia eriantha]	0.588	0.707	0.65	2e-53
126023786	226	flowering-related B-class MADS-box prote	0.588	0.707	0.65	5e-53
729974	231	RecName: Full=Floral homeotic protein PM	0.588	0.692	0.656	1e-52
333827677	226	apetala3-like protein [Vitis labrusca x	0.613	0.738	0.617	2e-52
1370276	227	MADS-box protein [Nicotiana tabacum]	0.577	0.691	0.643	3e-52
449460215	276	PREDICTED: floral homeotic protein DEFIC	0.610	0.601	0.609	1e-51

>gi|343887324|dbj|BAK61870.1| MADS-box protein (CitMADS8) [Citrus unshiu]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/272 (77%), Positives = 211/272 (77%), Gaps = 61/272 (22%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP
Sbjct: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE
Sbjct: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120

Query: 121 LTGLEQDILDGLKIIHECKDQVLARQINTFKRKVCSVCHIILKTYDSSLSFILLFVGNFQ 180
           LTGLEQDILDGLKIIHECKDQVLARQINTFKRK                           
Sbjct: 121 LTGLEQDILDGLKIIHECKDQVLARQINTFKRK--------------------------- 153

Query: 181 VRGVQKENKSLQDGFVSKISCLSSIFLITEDIKQRIKTFENNEILVFIQIINAKEEDPHY 240
           VRGVQKENKSLQDGF                                  IINAKEEDPHY
Sbjct: 154 VRGVQKENKSLQDGF----------------------------------IINAKEEDPHY 179

Query: 241 EYELVDNGEHCDSDFGFQNEGPGIFALRLQPN 272
           EYELVDNGEHCDSDFGFQNEGPGIFALRLQPN
Sbjct: 180 EYELVDNGEHCDSDFGFQNEGPGIFALRLQPN 211

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116078103|dbj|BAF34915.1| MADS-box protein [Citrus unshiu]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/272 (77%), Positives = 210/272 (77%), Gaps = 61/272 (22%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP
Sbjct: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE
Sbjct: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120

Query: 121 LTGLEQDILDGLKIIHECKDQVLARQINTFKRKVCSVCHIILKTYDSSLSFILLFVGNFQ 180
           LTGLEQDILDGLKII ECKDQVLARQINTFKRK                           
Sbjct: 121 LTGLEQDILDGLKIIRECKDQVLARQINTFKRK--------------------------- 153

Query: 181 VRGVQKENKSLQDGFVSKISCLSSIFLITEDIKQRIKTFENNEILVFIQIINAKEEDPHY 240
           VRGVQKENKSLQDGF                                  IINAKEEDPHY
Sbjct: 154 VRGVQKENKSLQDGF----------------------------------IINAKEEDPHY 179

Query: 241 EYELVDNGEHCDSDFGFQNEGPGIFALRLQPN 272
           EYELVDNGEHCDSDFGFQNEGPGIFALRLQPN
Sbjct: 180 EYELVDNGEHCDSDFGFQNEGPGIFALRLQPN 211

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458107|ref|XP_002279735.1| PREDICTED: floral homeotic protein DEFICIENS [Vitis vinifera] gi|125616882|gb|ABN46893.1| AP3-like MADS-box protein [Vitis labrusca x Vitis vinifera] gi|302142587|emb|CBI19790.3| unnamed protein product [Vitis vinifera]

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 127/272 (46%), Positives = 161/272 (59%), Gaps = 65/272 (23%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           M RGK+E+KRIEN+TNRQVT+SKRRNG+FKKA ELT+LCDAKVSI++ SST K HEYISP
Sbjct: 1   MARGKIEIKRIENSTNRQVTYSKRRNGIFKKASELTVLCDAKVSIIMLSSTGKLHEYISP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           STTTKQ+ D YQ TL VDLWS HYE+M ENL  ++ VN+ L+K+IRQRMGE L+DL++EE
Sbjct: 61  STTTKQIFDQYQNTLGVDLWSYHYERMQENLKKLKDVNKNLRKEIRQRMGEHLSDLSVEE 120

Query: 121 LTGLEQDILDGLKIIHECKDQVLARQINTFKRKVCSVCHIILKTYDSSLSFILLFVGNFQ 180
           L  LEQ++   LK++ + K QV+  QI TFK+K                           
Sbjct: 121 LRDLEQEMESSLKMVRDRKYQVINNQIETFKKK--------------------------- 153

Query: 181 VRGVQKENKSLQDGFVSKISCLSSIFLITEDIKQRIKTFENNEILVFIQIINAKEEDPHY 240
           VR V++ +K+L   F                                    +A++ D HY
Sbjct: 154 VRNVEQIHKNLLHEF------------------------------------DARDRDQHY 177

Query: 241 EYELVDNGEHCDSDFGFQNEGPGIFALRLQPN 272
              LVDNG   +S  GF N    +FAL LQPN
Sbjct: 178 G--LVDNGGDYESVLGFSNGSSPVFALSLQPN 207

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|262071557|gb|ACY08903.1| MADS-domain transcription factor, partial [Diospyros digyna]

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 122/259 (47%), Positives = 151/259 (58%), Gaps = 65/259 (25%)

Query: 14  ATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQK 73
            TNRQVT+SKRRNGLFKKA ELT+LCDA+VSI++ SST K HEYI+P+TTTKQL D YQK
Sbjct: 2   GTNRQVTYSKRRNGLFKKANELTVLCDARVSIIMVSSTGKIHEYINPTTTTKQLFDQYQK 61

Query: 74  TLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLK 133
           TL +DLWSSHYE+M ENL  ++ VNR L++QIRQRMGESLNDL   E+ GLE+DI   LK
Sbjct: 62  TLNIDLWSSHYERMQENLKKLKDVNRNLRRQIRQRMGESLNDLNFNEMHGLEEDIESSLK 121

Query: 134 IIHECKDQVLARQINTFKRKVCSVCHIILKTYDSSLSFILLFVGNFQVRGVQKENKSLQD 193
           +I E K +V+  QI T+K+K+                           R V++ N++L  
Sbjct: 122 VIRERKYKVIGNQIETYKKKM---------------------------RNVEEINRNLMH 154

Query: 194 GFVSKISCLSSIFLITEDIKQRIKTFENNEILVFIQIINAKEEDPHYEYELVDNGEHCDS 253
            F                                     A+EEDPHY   LVDNG   + 
Sbjct: 155 EF------------------------------------GAREEDPHYG--LVDNGVDYEH 176

Query: 254 DFGFQNEGPGIFALRLQPN 272
             GF N GP + ALRLQP+
Sbjct: 177 VLGFLNGGPRMLALRLQPH 195

Source: Diospyros digyna

Species: Diospyros digyna

Genus: Diospyros

Family: Ebenaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315418854|gb|ADU15474.1| AP3 [Actinidia eriantha]

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 104/160 (65%), Positives = 131/160 (81%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           M RGK+++KRIEN+TNRQVT+SKRRNGLFKKA ELT+LCDAKVSI++ SST K HEYISP
Sbjct: 1   MARGKIQIKRIENSTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEYISP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           S +TKQL D YQKTL +DLWSSHYEKM E+L  ++ VNR  +++IRQRMGESLN+L+ E+
Sbjct: 61  SVSTKQLFDQYQKTLGIDLWSSHYEKMQEHLKKLKDVNRNFRREIRQRMGESLNELSYED 120

Query: 121 LTGLEQDILDGLKIIHECKDQVLARQINTFKRKVCSVCHI 160
           L GLEQD+   LKII + K +V+  QI T+K+K+ +V  I
Sbjct: 121 LRGLEQDMETSLKIIRDRKYKVIGNQIETYKKKLRNVEEI 160

Source: Actinidia eriantha

Species: Actinidia eriantha

Genus: Actinidia

Family: Actinidiaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|126023786|gb|ABN71371.1| flowering-related B-class MADS-box protein APETALA3 [Vitis vinifera] gi|269116070|gb|ACZ26526.1| apetala3 [Vitis vinifera]

 Score =  213 bits (543), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 104/160 (65%), Positives = 130/160 (81%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           M RGK+E+KRIEN+TNRQVT+SKRRNG+FKKA ELT+LCDAKVSI++ SST K HEYISP
Sbjct: 1   MARGKIEIKRIENSTNRQVTYSKRRNGIFKKASELTVLCDAKVSIIMLSSTGKLHEYISP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           STTTKQ+ D YQ TL VDLWS HYE+M ENL  ++ VN+ L+K+IRQRMGE L+DL++EE
Sbjct: 61  STTTKQIFDQYQNTLGVDLWSYHYERMQENLKKLKDVNKNLRKEIRQRMGEHLSDLSVEE 120

Query: 121 LTGLEQDILDGLKIIHECKDQVLARQINTFKRKVCSVCHI 160
           L  LEQ++   LK++ + K QV+  QI TFK+KV +V  I
Sbjct: 121 LRDLEQEMESSLKMVRDRKYQVINNQIETFKKKVRNVEQI 160

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|729974|sp|Q07472.1|MADS1_PETHY RecName: Full=Floral homeotic protein PMADS 1; AltName: Full=Green petal homeotic protein gi|22665|emb|CAA49567.1| GP (green petal) [Petunia x hybrida] gi|110836621|gb|AAQ72510.2| DEF [Petunia x hybrida]

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 105/160 (65%), Positives = 130/160 (81%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           M RGK+++KRIEN TNRQVT+SKRRNGLFKKA ELT+LCDAKVSI++ SST K HE+ISP
Sbjct: 1   MARGKIQIKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           S TTKQL DLYQKT+ VDLW+SHYEKM E L  +++VNR L+K+IRQRMGESLNDL  E+
Sbjct: 61  SITTKQLFDLYQKTVGVDLWNSHYEKMQEQLRKLKEVNRNLRKEIRQRMGESLNDLNYEQ 120

Query: 121 LTGLEQDILDGLKIIHECKDQVLARQINTFKRKVCSVCHI 160
           L  L +++ + LK+I E K +V+  QI TFK+KV +V  I
Sbjct: 121 LEELMENVDNSLKLIRERKYKVIGNQIETFKKKVRNVEEI 160

Source: Petunia x hybrida

Species: Petunia x hybrida

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|333827677|gb|AEG19541.1| apetala3-like protein [Vitis labrusca x Vitis vinifera]

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 105/170 (61%), Positives = 134/170 (78%), Gaps = 3/170 (1%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           M RGK+E+KRIEN+TNRQVT+SKRRNG+FKKA ELT+LCDAKVSI++ SST K HEYISP
Sbjct: 1   MARGKIEIKRIENSTNRQVTYSKRRNGIFKKASELTVLCDAKVSIIMLSSTGKLHEYISP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           S TTKQ+ D YQ TL VDLWS HYE+M ENL  ++ VN+ L+K+IRQRMGE L+DL++EE
Sbjct: 61  SATTKQIFDQYQNTLGVDLWSYHYERMQENLKKLKDVNKNLRKEIRQRMGEHLSDLSVEE 120

Query: 121 LTGLEQDILDGLKIIHECKDQVLARQINTFKRKVCSVCHI---ILKTYDS 167
           L  LEQ++   LK++ + K QV+  QI TFK+KV +V  I   +L  +D+
Sbjct: 121 LRDLEQEMESSLKMVRDRKYQVINNQIETFKKKVRNVEQIHKNLLHEFDA 170

Source: Vitis labrusca x Vitis vinifera

Species: Vitis labrusca x Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1370276|emb|CAA65288.1| MADS-box protein [Nicotiana tabacum]

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 103/160 (64%), Positives = 130/160 (81%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           M RGK+++KRIEN TNRQVT+SKRRNGLFKKA ELT+LCDAKVSI++ SST K HE+ISP
Sbjct: 1   MARGKIQIKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISP 60

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           S TTKQL DLYQKT+ VDLW+SHYEKM E L  ++ VNR L+++IRQRMGESLNDL  E+
Sbjct: 61  SVTTKQLFDLYQKTVGVDLWNSHYEKMQEQLRKLKDVNRNLRREIRQRMGESLNDLNYEQ 120

Query: 121 LTGLEQDILDGLKIIHECKDQVLARQINTFKRKVCSVCHI 160
           L  L +++ + LK+I E K +V+  QI+T+K+KV +V  I
Sbjct: 121 LEELNENVDNSLKLIRERKYKVIGNQIDTYKKKVRNVEEI 160

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460215|ref|XP_004147841.1| PREDICTED: floral homeotic protein DEFICIENS-like [Cucumis sativus] gi|449476867|ref|XP_004154859.1| PREDICTED: floral homeotic protein DEFICIENS-like [Cucumis sativus]

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 103/169 (60%), Positives = 135/169 (79%), Gaps = 3/169 (1%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           M RGK+++KRIEN TNRQVT+SKRRNGLFKKA ELT+LCDAKVSI++ SST K HEYISP
Sbjct: 33  MARGKIQIKRIENPTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISP 92

Query: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
           +T+TK+L D YQKTL VDLW +HYE+M +NL  ++ +NR L++QIRQRMGE +NDL+ EE
Sbjct: 93  ATSTKELFDQYQKTLGVDLWITHYERMQDNLKKLKDINRNLRRQIRQRMGECMNDLSFEE 152

Query: 121 LTGLEQDILDGLKIIHECKDQVLARQINTFKRKVCSVCHI---ILKTYD 166
           L  LEQD+ + ++II E K +V++ QI T K+K+ SV  I   +L+ +D
Sbjct: 153 LRCLEQDMDNAVRIIRERKYRVISNQIETHKKKLKSVGEIHKSLLQEFD 201

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	272
UNIPROTKB|P23706	227	DEFA "Floral homeotic protein	0.577	0.691	0.636	6.9e-57
UNIPROTKB|Q9ZS27	228	gdef2 "MADS-box protein, GDEF2	0.599	0.714	0.570	2.6e-49
TAIR|locus:2096164	232	AP3 "APETALA 3" [Arabidopsis t	0.562	0.659	0.549	8.7e-49
UNIPROTKB|Q9ZS28	226	gdef1 "MADs-box protein, GDEF1	0.566	0.681	0.554	7.3e-43
UNIPROTKB|Q9ZS26	197	gglo1 "MADS-box protein, GGLO1	0.522	0.720	0.436	1.3e-29
UNIPROTKB|Q03378	215	GLO "Floral homeotic protein G	0.481	0.609	0.458	1.3e-27
TAIR|locus:2149264	208	PI "PISTILLATA" [Arabidopsis t	0.525	0.687	0.433	1.7e-27
UNIPROTKB|Q10CQ1	246	MADS14 "MADS-box transcription	0.533	0.589	0.424	5.1e-26
TAIR|locus:2177125	268	AGL15 "AGAMOUS-like 15" [Arabi	0.533	0.541	0.433	9.7e-25
UNIPROTKB|Q9ZS25	210	gsqua1 "MADS-box protein, GSQU	0.558	0.723	0.379	1.2e-24

UNIPROTKB|P23706 DEFA "Floral homeotic protein DEFICIENS" [Antirrhinum majus (taxid:4151)]

 Score = 511 (184.9 bits), Expect = 6.9e-57, Sum P(2) = 6.9e-57
 Identities = 100/157 (63%), Positives = 128/157 (81%)

Query:     1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
             M RGK+++KRIEN TNRQVT+SKRRNGLFKKA EL++LCDAKVSI++ SST K HEYISP
Sbjct:     1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISP 60

Query:    61 STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
             +T TKQL D YQK + VDLWSSHYEKM E+L  + +VNR L+++IRQRMGESLNDL  E+
Sbjct:    61 TTATKQLFDQYQKAVGVDLWSSHYEKMQEHLKKLNEVNRNLRREIRQRMGESLNDLGYEQ 120

Query:   121 LTGLEQDILDGLKIIHECKDQVLARQINTFKRKVCSV 157
             +  L +D+ + LK+I E K +V++ QI+T K+KV +V
Sbjct:   121 IVNLIEDMDNSLKLIRERKYKVISNQIDTSKKKVRNV 157

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q9ZS27 gdef2 "MADS-box protein, GDEF2" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 470 (170.5 bits), Expect = 2.6e-49, Sum P(2) = 2.6e-49
 Identities = 93/163 (57%), Positives = 121/163 (74%)

Query:     1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
             M RGK+++K+IEN+TNRQVT+SKRRNGLFKKA ELT+LCDAKVSI++ S T K HEYISP
Sbjct:     1 MARGKIQIKKIENSTNRQVTYSKRRNGLFKKASELTVLCDAKVSIIMVSCTDKLHEYISP 60

Query:    61 STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
             S TTKQ  D YQK   +DLW+SHYEKM E L  +++VNR L++QIRQR+G+ L DL  EE
Sbjct:    61 SITTKQFFDQYQKASGIDLWNSHYEKMQEELRQLKEVNRNLRRQIRQRLGDCLEDLGFEE 120

Query:   121 LTGLEQDILDGLKIIHECKDQVLARQINTFKRKVCSVCHIILK 163
                LE++  + + II E K +V+  ++ T K+KV S   +  K
Sbjct:   121 FLDLEKESQEAVYIIRERKLKVIGNKLETSKKKVRSAQDVYKK 163

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2096164 AP3 "APETALA 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 436 (158.5 bits), Expect = 8.7e-49, Sum P(2) = 8.7e-49
 Identities = 84/153 (54%), Positives = 117/153 (76%)

Query:     1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
             M RGK+++KRIEN TNRQVT+SKRRNGLFKKA ELT+LCDA+VSI++ SS+ K HEYISP
Sbjct:     1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISP 60

Query:    61 STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
             +TTTK+++DLYQ    VD+W++ YE+M E    + + NR L+ QI+QR+GE L++L ++E
Sbjct:    61 NTTTKEIVDLYQTISDVDVWATQYERMQETKRKLLETNRNLRTQIKQRLGECLDELDIQE 120

Query:   121 LTGLEQDILDGLKIIHECKDQVLARQINTFKRK 153
             L  LE ++ +  K++ E K + L  QI T K+K
Sbjct:   121 LRRLEDEMENTFKLVRERKFKSLGNQIETTKKK 153

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

UNIPROTKB|Q9ZS28 gdef1 "MADs-box protein, GDEF1" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 86/155 (55%), Positives = 118/155 (76%)

Query:     1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
             MGRGK+E+K+IEN TNRQVT+SKRRNG+FKKA ELT+LCDAKVS+++ S+T K HEYISP
Sbjct:     1 MGRGKIEIKKIENNTNRQVTYSKRRNGIFKKAHELTVLCDAKVSLIMFSNTGKFHEYISP 60

Query:    61 STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQR-MGESLNDLTLE 119
             STTTK++ D YQ T+  DLWSSHYE+M E +  ++  N  L+++IRQR +GE  + L + 
Sbjct:    61 STTTKKMYDQYQSTVGFDLWSSHYERMKETMKKLKDTNNKLRREIRQRVLGEDFDGLDMN 120

Query:   120 ELTGLEQDILDGLKIIHECKDQVLARQINTFKRKV 154
             +LT LEQ + D L ++ E K  V+  Q +T +++V
Sbjct:   121 DLTSLEQHMQDSLTLVRERKYHVIKTQTDTCRKRV 155

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q9ZS26 gglo1 "MADS-box protein, GGLO1" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 62/142 (43%), Positives = 93/142 (65%)

Query:     1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
             MGRGK+E+KRIEN +NRQVT+SKR+NG+ KKA+E+T+LCDA VS++I  S+ K +EY SP
Sbjct:     1 MGRGKIEIKRIENTSNRQVTYSKRKNGIIKKAKEITVLCDANVSLVIYGSSGKMYEYCSP 60

Query:    61 STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
              T    +LD YQ+     LW + +E +   +  +++ N  ++ ++R   GE +  L  EE
Sbjct:    61 KTNLIDMLDRYQRLSGNKLWDAKHENLQNEIDRIKKENESMQIELRHLKGEDITSLNYEE 120

Query:   121 LTGLEQDILDGLKIIHECKDQV 142
             L   E  + +GL  I E KD++
Sbjct:   121 LIAYEDALENGLTNIREKKDEI 142

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q03378 GLO "Floral homeotic protein GLOBOSA" [Antirrhinum majus (taxid:4151)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 60/131 (45%), Positives = 89/131 (67%)

Query:     1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
             MGRGK+E+KRIEN++NRQVT+SKRRNG+ KKA+E+++LCDA VS++I +S+ K HE+ SP
Sbjct:     1 MGRGKIEIKRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSP 60

Query:    61 STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
             STT   +LD Y K     LW   +E +   +  V++ N  ++ ++R   GE +  L  +E
Sbjct:    61 STTLVDMLDHYHKLSGKRLWDPKHEHLDNEINRVKKENDSMQIELRHLKGEDITTLNYKE 120

Query:   121 LTGLEQDILDG 131
             L  LE  + +G
Sbjct:   121 LMVLEDALENG 131

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2149264 PI "PISTILLATA" [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 62/143 (43%), Positives = 91/143 (63%)

Query:     1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
             MGRGK+E+KRIENA NR VTFSKRRNGL KKA+E+T+LCDAKV+++I +S  K  +Y  P
Sbjct:     1 MGRGKIEIKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCP 60

Query:    61 STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120
             S     +LD YQK     LW + +E +   +  +++ N  L+ ++R   GE +  L L+ 
Sbjct:    61 SMDLGAMLDQYQKLSGKKLWDAKHENLSNEIDRIKKENDSLQLELRHLKGEDIQSLNLKN 120

Query:   121 LTGLEQDILDGLKIIHECKDQVL 143
             L  +E  I  GL  + + + ++L
Sbjct:   121 LMAVEHAIEHGLDKVRDHQMEIL 143

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0048481 "ovule development" evidence=RCA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q10CQ1 MADS14 "MADS-box transcription factor 14" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 271 (100.5 bits), Expect = 5.1e-26, Sum P(2) = 5.1e-26
 Identities = 70/165 (42%), Positives = 101/165 (61%)

Query:     1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
             MGRGK+++KRIEN  NRQVTFSKRR+GL KKA E+++LCDA+V+++I S+  K +EY + 
Sbjct:     1 MGRGKVQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYATD 60

Query:    61 STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVN-----RILKKQIR--QR----- 108
             S   K +L+ Y++        S+ EK+L +  +  Q N     R LK ++   Q+     
Sbjct:    61 SCMDK-ILERYERY-------SYAEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQKHL 112

Query:   109 MGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRK 153
             MGE L  L L+EL  LEQ + + LK I   K Q++   IN  +RK
Sbjct:   113 MGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRK 157

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2177125 AGL15 "AGAMOUS-like 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 68/157 (43%), Positives = 97/157 (61%)

Query:     1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
             MGRGK+E+KRIENA +RQVTFSKRR+GL KKAREL++LCDA+V++++ S + K  EY   
Sbjct:     1 MGRGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEY--S 58

Query:    61 STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVE----QVNRILKKQIRQRMGESLNDL 116
             ST  KQ L  Y         SS   K  E+   V+    Q++++ +K + Q  G+ LN L
Sbjct:    59 STGMKQTLSRYGNHQ-----SSSASKAEEDCAEVDILKDQLSKLQEKHL-QLQGKGLNPL 112

Query:   117 TLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRK 153
             T +EL  LEQ +   L  + E K+++L  Q+   + K
Sbjct:   113 TFKELQSLEQQLYHALITVRERKERLLTNQLEESRLK 149

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA;IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA;NAS;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA;TAS

GO:0060862 "negative regulation of floral organ abscission" evidence=IMP

GO:0010047 "fruit dehiscence" evidence=IMP

GO:0060867 "fruit abscission" evidence=IMP

GO:2000692 "negative regulation of seed maturation" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IGI;IDA

GO:0071365 "cellular response to auxin stimulus" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0009910 "negative regulation of flower development" evidence=IMP

GO:0048577 "negative regulation of short-day photoperiodism, flowering" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=IDA;TAS

GO:0045487 "gibberellin catabolic process" evidence=TAS

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

UNIPROTKB|Q9ZS25 gsqua1 "MADS-box protein, GSQUA1" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 60/158 (37%), Positives = 96/158 (60%)

Query:     1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
             MGRGK+++KRIEN  NRQVTFSKRR GL KKA E+++LCDA+V++++ S+  K  EY S 
Sbjct:     1 MGRGKVQLKRIENKINRQVTFSKRRGGLLKKAHEISVLCDAEVALIVFSAKGKLFEY-ST 59

Query:    61 STTTKQLLDLYQKTLRVDLWSSHYE-----KMLENLGAVEQVNRILKKQIRQRMGESLND 115
              +  + +LD Y++   +D      +     +  +    ++    +L++ +R  MGE +  
Sbjct:    60 DSCMENILDRYEQYSNIDRQHVAVDTDSPIRWTQECNKLKSRAELLQRNLRHYMGEDIES 119

Query:   116 LTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRK 153
             L L E+  LEQ +   LK IH  K+Q+L + I+  ++K
Sbjct:   120 LGLREIQNLEQQLDTALKRIHSKKNQLLHQSISELQKK 157

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	272
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	2e-36
smart00432	59	smart00432, MADS, MADS domain	2e-29
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	1e-26
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	5e-22
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	3e-19
pfam01486	100	pfam01486, K-box, K-box region	2e-17
COG5068	412	COG5068, ARG80, Regulator of arginine metabolism a	2e-07

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score =  124 bits (313), Expect = 2e-36
 Identities = 48/79 (60%), Positives = 65/79 (82%), Gaps = 2/79 (2%)

Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPS 61
          GRGK+E+KRIEN+TNRQVTFSKRRNGL KKA EL++LCDA+V+++I SS+ K +E+ SPS
Sbjct: 1  GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPS 60

Query: 62 TTTKQLLDLYQKTLRVDLW 80
             +++++ YQKT    LW
Sbjct: 61 --MEKIIERYQKTSGSSLW 77

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score =  105 bits (265), Expect = 2e-29
 Identities = 40/59 (67%), Positives = 51/59 (86%)

Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
          GR K+E+KRIEN TNRQVTFSKRRNGLFKKA EL++LCDA+V++++ S T K +E+ SP
Sbjct: 1  GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59

Length = 59

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score = 98.0 bits (245), Expect = 1e-26
 Identities = 38/59 (64%), Positives = 51/59 (86%)

Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
          GRGK+E+KRIEN T+RQVTFSKRRNGLFKKA EL++LCDA+V++++ S + K +E+ S 
Sbjct: 1  GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 86.9 bits (216), Expect = 5e-22
 Identities = 31/60 (51%), Positives = 43/60 (71%)

Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPS 61
          GR K+++KRIEN   R VTFSKRR GLFKKA EL+ LC A+V++++ S + K + +   S
Sbjct: 1  GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSS 60

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 78.6 bits (194), Expect = 3e-19
 Identities = 36/51 (70%), Positives = 45/51 (88%)

Query: 9  KRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYIS 59
          KRIEN +NRQVTFSKRRNG+FKKA EL++LCDA+V+++I SST K +EY S
Sbjct: 1  KRIENKSNRQVTFSKRRNGIFKKAHELSVLCDAEVAVIIFSSTGKLYEYSS 51

Length = 51

>gnl|CDD|216525 pfam01486, K-box, K-box region

 Score = 75.3 bits (186), Expect = 2e-17
 Identities = 31/83 (37%), Positives = 49/83 (59%)

Query: 71  YQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILD 130
           YQK    DLW S YE + +    +++ N  L+++ R  +GE L  L+L+EL  LEQ + +
Sbjct: 1   YQKLSGNDLWESKYENLQQEAAKLKKQNENLQREQRHLLGEDLGSLSLKELQQLEQQLEN 60

Query: 131 GLKIIHECKDQVLARQINTFKRK 153
           GLK I   K+++L  QI   ++K
Sbjct: 61  GLKHIRSRKNELLLNQIEELQKK 83

The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation. Length = 100

>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

 Score = 51.2 bits (122), Expect = 2e-07
 Identities = 23/61 (37%), Positives = 36/61 (59%)

Query: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           +   K+ +  I N T R VTFSKR++G+ KKA EL++L   +V +L+ S     H + +P
Sbjct: 81  VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTP 140

Query: 61  S 61
            
Sbjct: 141 K 141

Length = 412

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	272
KOG0014	195	consensus MADS box transcription factor [Transcrip	100.0
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	99.97
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.95
smart00432	59	MADS MADS domain.	99.95
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.94
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.91
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	99.78
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.69
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.33
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	82.42

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=100.00  E-value=1.4e-36  Score=263.92  Aligned_cols=154  Identities=34%  Similarity=0.507  Sum_probs=123.4

Q ss_pred             CCcccceeEEeCCCccchhhhhhhccchhHHHHHHhhhcCCcEEEEEeccCcccccccCCcchhhhhHHHHhhhcccccc
Q 024093            1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLW   80 (272)
Q Consensus         1 MgR~KIeIkrIeN~t~RqvTFsKRR~GL~KKA~ELSVLCDaeValIifS~~GKl~e~~sps~~~kkIidRYq~~s~~~l~   80 (272)
                      |||+||+|+||+|.++|||||||||+||||||+||||||||+||||||||+|++|+|++|+.++..+++||......+..
T Consensus         1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   80 (195)
T KOG0014|consen    1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK   80 (195)
T ss_pred             CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999976799999999886542211


Q ss_pred             c-----hhh---------------hh-----hhhhhhHHHHHHHHHH---HHHHhhccCcCCCCCH-HHHHHHHHHHHHh
Q 024093           81 S-----SHY---------------EK-----MLENLGAVEQVNRILK---KQIRQRMGESLNDLTL-EELTGLEQDILDG  131 (272)
Q Consensus        81 ~-----~~~---------------Ek-----lqeeL~kLKe~n~~Lr---keiRql~GedL~~LSl-eEL~~LEq~LE~s  131 (272)
                      .     ...               +.     .......++...+.+.   ...+++.|+++.+++. ++|..++.+++.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~  160 (195)
T KOG0014|consen   81 KKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESS  160 (195)
T ss_pred             ccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHh
Confidence            0     000               00     1111222333344443   3367899999999999 9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHhcc
Q 024093          132 LKIIHECKDQVLARQIN-TFKRKV  154 (272)
Q Consensus       132 L~~VR~RK~qli~~Qi~-~lkkK~  154 (272)
                      +..+|..+...+.+++. .++.+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~  184 (195)
T KOG0014|consen  161 LHNSRSSKSKPLSDSNFQVLQEKE  184 (195)
T ss_pred             hcCCCCCCCcCCcchhhhhhcccc
Confidence            99999999888887765 445444

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.97  E-value=2.2e-32  Score=207.59  Aligned_cols=77  Identities=62%  Similarity=0.998  Sum_probs=74.4

Q ss_pred             CcccceeEEeCCCccchhhhhhhccchhHHHHHHhhhcCCcEEEEEeccCcccccccCCcchhhhhHHHHhhhcccccc
Q 024093            2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLW   80 (272)
Q Consensus         2 gR~KIeIkrIeN~t~RqvTFsKRR~GL~KKA~ELSVLCDaeValIifS~~GKl~e~~sps~~~kkIidRYq~~s~~~l~   80 (272)
                      ||+||+|++|||+.+|++||+||++||||||+||||||||+||+|||||+|++|+|+||+  +++|++||++.++.++|
T Consensus         1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s--~~~vl~ry~~~~~~~~~   77 (77)
T cd00265           1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPS--MEKIIERYQKTSGSSLW   77 (77)
T ss_pred             CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCC--HHHHHHHHHhccccccC
Confidence            899999999999999999999999999999999999999999999999999999999997  48999999999988776

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.95  E-value=1e-28  Score=189.98  Aligned_cols=74  Identities=42%  Similarity=0.685  Sum_probs=70.7

Q ss_pred             CcccceeEEeCCCccchhhhhhhccchhHHHHHHhhhcCCcEEEEEeccCcccccccCCcchhhhhHHHHhhhcc
Q 024093            2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLR   76 (272)
Q Consensus         2 gR~KIeIkrIeN~t~RqvTFsKRR~GL~KKA~ELSVLCDaeValIifS~~GKl~e~~sps~~~kkIidRYq~~s~   76 (272)
                      ||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||+|||||+|+.+.|++++. +..++++|...+.
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~-~~~~l~~~~~~~~   74 (83)
T cd00266           1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSE-VEGVISRFEVLSA   74 (83)
T ss_pred             CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHH-HHHHHHHHhhcCH
Confidence            8999999999999999999999999999999999999999999999999999999988875 8999999988764

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>smart00432 MADS MADS domain

Probab=99.95  E-value=2e-28  Score=176.96  Aligned_cols=59  Identities=68%  Similarity=1.042  Sum_probs=58.2

Q ss_pred             CcccceeEEeCCCccchhhhhhhccchhHHHHHHhhhcCCcEEEEEeccCcccccccCC
Q 024093            2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP   60 (272)
Q Consensus         2 gR~KIeIkrIeN~t~RqvTFsKRR~GL~KKA~ELSVLCDaeValIifS~~GKl~e~~sp   60 (272)
                      ||+||+|++|+|+.+|++||+||+.||||||+||||||||+||+|||||+|+++.|++|
T Consensus         1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p   59 (59)
T smart00432        1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP   59 (59)
T ss_pred             CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence            89999999999999999999999999999999999999999999999999999999987

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.94  E-value=1.5e-27  Score=172.47  Aligned_cols=59  Identities=64%  Similarity=1.014  Sum_probs=57.8

Q ss_pred             CcccceeEEeCCCccchhhhhhhccchhHHHHHHhhhcCCcEEEEEeccCcccccccCC
Q 024093            2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP   60 (272)
Q Consensus         2 gR~KIeIkrIeN~t~RqvTFsKRR~GL~KKA~ELSVLCDaeValIifS~~GKl~e~~sp   60 (272)
                      ||+||+|++|+|+..|++||+|||.||||||+||||||||+||+|||||+|+++.|++|
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~   59 (59)
T cd00120           1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS   59 (59)
T ss_pred             CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence            89999999999999999999999999999999999999999999999999999999875

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.91  E-value=1.1e-25  Score=158.03  Aligned_cols=51  Identities=51%  Similarity=0.812  Sum_probs=46.9

Q ss_pred             EEeCCCccchhhhhhhccchhHHHHHHhhhcCCcEEEEEeccCcccccccC
Q 024093            9 KRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYIS   59 (272)
Q Consensus         9 krIeN~t~RqvTFsKRR~GL~KKA~ELSVLCDaeValIifS~~GKl~e~~s   59 (272)
                      |+|+|++.|++||+|||.||||||+|||+||||+||+|||||+|++|.|+|
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s   51 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS   51 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence            689999999999999999999999999999999999999999999999976

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=99.78  E-value=1e-18  Score=138.36  Aligned_cols=96  Identities=39%  Similarity=0.627  Sum_probs=93.8

Q ss_pred             HhhhccccccchhhhhhhhhhhHHHHHHHHHHHHHHhhccCcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 024093           71 YQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTF  150 (272)
Q Consensus        71 Yq~~s~~~l~~~~~EklqeeL~kLKe~n~~LrkeiRql~GedL~~LSleEL~~LEq~LE~sL~~VR~RK~qli~~Qi~~l  150 (272)
                      |++.++.+.|..+++.++.++.+++.+++.|+..+|+++|+||++||++||..||++|+.||.+||+||++++.++|+++
T Consensus         1 Y~~~~~~~~~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l   80 (100)
T PF01486_consen    1 YQKQSGTDLWDSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEEL   80 (100)
T ss_pred             CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            78889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcccccccccccccccchhhHhhhhhhhhhhhhHHHhhhhhh
Q 024093          151 KRKVCSVCHIILKTYDSSLSFILLFVGNFQVRGVQKENKSLQD  193 (272)
Q Consensus       151 kkK~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~  193 (272)
                      ++|+                           +.+.++|..|++
T Consensus        81 ~~ke---------------------------~~l~~en~~L~~   96 (100)
T PF01486_consen   81 KKKE---------------------------RELEEENNQLRQ   96 (100)
T ss_pred             HHHH---------------------------HHHHHHHHHHHH
Confidence            9999                           999999999993

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.69  E-value=5.3e-18  Score=155.58  Aligned_cols=76  Identities=37%  Similarity=0.539  Sum_probs=67.6

Q ss_pred             CcccceeEEeCCCccchhhhhhhccchhHHHHHHhhhcCCcEEEEEeccCcccccccCCcc-------hhhhhHHHHhhh
Q 024093            2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPST-------TTKQLLDLYQKT   74 (272)
Q Consensus         2 gR~KIeIkrIeN~t~RqvTFsKRR~GL~KKA~ELSVLCDaeValIifS~~GKl~e~~sps~-------~~kkIidRYq~~   74 (272)
                      ||.||+|++|||+..|.|||||||.||||||+|||||.|.+|-|+|.|.+|-+|.|++|-.       +=+.+|.-..+.
T Consensus        63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~s~~Gk~lIq~cLn~  142 (338)
T KOG0015|consen   63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMITSDEGKALIQACLNA  142 (338)
T ss_pred             ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccccccccccchhhHHHHHHHhcC
Confidence            7999999999999999999999999999999999999999999999999999999999853       125667666666


Q ss_pred             ccc
Q 024093           75 LRV   77 (272)
Q Consensus        75 s~~   77 (272)
                      ++.
T Consensus       143 pd~  145 (338)
T KOG0015|consen  143 PDT  145 (338)
T ss_pred             CCC
Confidence            543

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.33  E-value=6.3e-13  Score=126.97  Aligned_cols=62  Identities=37%  Similarity=0.570  Sum_probs=60.3

Q ss_pred             CCcccceeEEeCCCccchhhhhhhccchhHHHHHHhhhcCCcEEEEEeccCcccccccCCcc
Q 024093            1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPST   62 (272)
Q Consensus         1 MgR~KIeIkrIeN~t~RqvTFsKRR~GL~KKA~ELSVLCDaeValIifS~~GKl~e~~sps~   62 (272)
                      |||+||.|..|+|+++|.|||+||+.||+|||.||+||.|.+|.+++.|.+|+++.|++|..
T Consensus        81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~~  142 (412)
T COG5068          81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKL  142 (412)
T ss_pred             cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCcc
Confidence            79999999999999999999999999999999999999999999999999999999999863

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=82.42  E-value=7.8  Score=29.08  Aligned_cols=34  Identities=29%  Similarity=0.362  Sum_probs=25.5

Q ss_pred             CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 024093          116 LTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKV  154 (272)
Q Consensus       116 LSleEL~~LEq~LE~sL~~VR~RK~qli~~Qi~~lkkK~  154 (272)
                      +|++.|..||..+..++..|..     +..+++.|+.+.
T Consensus         1 M~~E~l~~LE~ki~~aveti~~-----Lq~e~eeLke~n   34 (72)
T PF06005_consen    1 MSLELLEQLEEKIQQAVETIAL-----LQMENEELKEKN   34 (72)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence            5788999999999999998864     445566777765

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	272
1tqe_P	93	Mechanism Of Recruitment Of Class Ii Histone Deacet		3e-10
3mu6_A	71	Inhibiting The Binding Of Class Iia Histone Deacety		3e-10
1egw_A	77	Crystal Structure Of Mef2a Core Bound To Dna Length		4e-10
3kov_A	90	Structure Of Mef2a Bound To Dna Reveals A Completel		4e-10
1c7u_A	85	Complex Of The Dna Binding Core Domain Of The Trans		6e-10
1n6j_A	93	Structural Basis Of Sequence-Specific Recruitment O		2e-09
1mnm_A	100	Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLE		1e-08
1srs_A	92	Serum Response Factor (Srf) Core Complexed With Spe		7e-06
1k6o_B	103	Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dn		8e-06

>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 44/59 (74%)
Query: 1  MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYIS 59
          MGR K+++ RI +  NRQVTF+KR+ GL KKA EL++LCD +++++I +S  +  +Y S
Sbjct: 1  MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAS 59

>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases To Myocyte Enhancer Factor-2 By Small Molecules Length = 71

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 44/59 (74%)
Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
          GR K+++ RI +  NRQVTF+KR+ GL KKA EL++LCD +++++I +S+ K  +Y S 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST 59

>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna Length = 77

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 44/58 (75%)
Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYIS 59
          GR K+++ RI +  NRQVTF+KR+ GL KKA EL++LCD +++++I +S+ K  +Y S
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS 58

>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS Transcription Co-Factors Length = 90

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 44/58 (75%)
Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYIS 59
          GR K+++ RI +  NRQVTF+KR+ GL KKA EL++LCD +++++I +S+ K  +Y S
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS 58

>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The Transcription Factor Mef2a With A 20mer Oligonucleotide Length = 85

Iteration: 1
 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 44/58 (75%)
Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYIS 59
          GR K+++ RI +  NRQVTF+KR+ GL KKA EL++L DA+++++I +S+ K  +Y S
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNKLFQYAS 58

>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 43/58 (74%)
Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYIS 59
          GR K+++ RI +  NRQVTF+KR+ GL KKA EL++LCD +++++I +S  +  +Y S
Sbjct: 1  GRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAS 58

>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX Crystal Structure Length = 100

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 40/58 (68%)
Query: 3  RGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
          R K+E+K IEN T R VTFSKR++G+ KKA EL++L   +V +L+ S T   + + +P
Sbjct: 18 RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP 75

>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific Sre Dna Length = 92

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYIS 59
          GR K++M+ I+N   R  TFSKR+ G+ KKA EL+ L   +V +L+ S T   + + +
Sbjct: 11 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT 68

>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna Complex Length = 103

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYIS 59
          GR K++M+ I+N   R  TFSKR+ G+ KKA EL+ L   +V +L+ S T   + + +
Sbjct: 10 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT 67

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	272
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	9e-33
1egw_A	77	MADS box transcription enhancer factor 2, polypept	1e-31
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	1e-31
1hbx_A	92	SRF, serum response factor; gene regulation, trans	2e-31
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	6e-31
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score =  114 bits (288), Expect = 9e-33
 Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 2/73 (2%)

Query: 1  MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
            R K+E+K IEN T R VTFSKR++G+ KKA EL++L   +V +L+ S T   + + +P
Sbjct: 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP 75

Query: 61 STTTKQLLDLYQK 73
              + ++   + 
Sbjct: 76 K--FEPIVTQQEG 86

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score =  111 bits (279), Expect = 1e-31
 Identities = 30/72 (41%), Positives = 49/72 (68%), Gaps = 2/72 (2%)

Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPS 61
          GR K+++ RI +  NRQVTF+KR+ GL KKA EL++LCD +++++I +S+ K  +Y S  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 62 TTTKQLLDLYQK 73
              ++L  Y +
Sbjct: 61 --MDKVLLKYTE 70

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score =  111 bits (279), Expect = 1e-31
 Identities = 30/84 (35%), Positives = 52/84 (61%), Gaps = 2/84 (2%)

Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPS 61
          GR K+++ RI +  NRQVTF+KR+ GL KKA EL++LCD +++++I +S+ K  +Y S  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 62 TTTKQLLDLYQKTLRVDLWSSHYE 85
              ++L  Y +        ++ +
Sbjct: 61 --MDKVLLKYTEYNEPHESRTNSD 82

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score =  111 bits (279), Expect = 2e-31
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 1  MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           GR K++M+ I+N   R  TFSKR+ G+ KKA EL+ L   +V +L+ S T   + + + 
Sbjct: 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 69

Query: 61 STTTKQLLDLYQK 73
              + ++     
Sbjct: 70 K--LQPMITSETG 80

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score =  110 bits (276), Expect = 6e-31
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 1  MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           GR K++M+ I+N   R  TFSKR+ G+ KKA EL+ L   +V +L+ S T   + + + 
Sbjct: 9  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 68

Query: 61 STTTKQLLDLYQK 73
              + ++     
Sbjct: 69 K--LQPMITSETG 79

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 1e-06
 Identities = 39/275 (14%), Positives = 87/275 (31%), Gaps = 79/275 (28%)

Query: 16  NRQVTFSKRRNGLFKKARELTILCDA-----KVSILICSSTAKAHE----------YIS- 59
           +R   + K R  L +      +L D      K + +       +++          +++ 
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGK-TWVA-LDVCLSYKVQCKMDFKIFWLNL 189

Query: 60  -----PSTTTKQLLDLYQKTLRVDL-WSSHYEKMLENLGAVEQVNRILKKQIRQRMGESL 113
                P T  + L  L     ++D  W+S  +        +  +   L++ ++ +  E  
Sbjct: 190 KNCNSPETVLEMLQKLL---YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE-- 244

Query: 114 NDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVCSVCHIILKTYDSSLSFIL 173
           N L           +L  ++      +   A+  N F       C I+L T    ++  L
Sbjct: 245 NCL----------LVLLNVQ------N---AKAWNAFNLS----CKILLTTRFKQVTDFL 281

Query: 174 LFVGNFQVRGVQ-------KENKSLQDGFVS-KISCLSS---------IFLITEDIKQRI 216
                  +            E KSL   ++  +   L           + +I E I+  +
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341

Query: 217 KTFEN---------NEIL-VFIQIINAKEEDPHYE 241
            T++N           I+   + ++   E    ++
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	272
1egw_A	77	MADS box transcription enhancer factor 2, polypept	100.0
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	100.0
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	100.0
1hbx_A	92	SRF, serum response factor; gene regulation, trans	99.98
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	99.97

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=100.00  E-value=1.4e-36  Score=229.18  Aligned_cols=73  Identities=41%  Similarity=0.690  Sum_probs=69.0

Q ss_pred             CcccceeEEeCCCccchhhhhhhccchhHHHHHHhhhcCCcEEEEEeccCcccccccCCcchhhhhHHHHhhhcc
Q 024093            2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLR   76 (272)
Q Consensus         2 gR~KIeIkrIeN~t~RqvTFsKRR~GL~KKA~ELSVLCDaeValIifS~~GKl~e~~sps~~~kkIidRYq~~s~   76 (272)
                      ||+||+|++|||+++|||||+|||+||||||+||||||||+||||||||+||+|+|+||  +|++|++||++.+.
T Consensus         1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~--~~~~il~ry~~~~~   73 (77)
T 1egw_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST--DMDKVLLKYTEYNE   73 (77)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESS--CHHHHHHHHHHC--
T ss_pred             CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCC--CHHHHHHHHHhccC
Confidence            89999999999999999999999999999999999999999999999999999999987  47999999998753

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=100.00  E-value=8.1e-36  Score=230.77  Aligned_cols=73  Identities=41%  Similarity=0.690  Sum_probs=70.3

Q ss_pred             CcccceeEEeCCCccchhhhhhhccchhHHHHHHhhhcCCcEEEEEeccCcccccccCCcchhhhhHHHHhhhcc
Q 024093            2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLR   76 (272)
Q Consensus         2 gR~KIeIkrIeN~t~RqvTFsKRR~GL~KKA~ELSVLCDaeValIifS~~GKl~e~~sps~~~kkIidRYq~~s~   76 (272)
                      ||+||+|++|||+++|||||||||+||||||+||||||||+||||||||+|++|+|+||  +|++|++||++.+.
T Consensus         1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~--~~~~il~rY~~~~~   73 (90)
T 3p57_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST--DMDKVLLKYTEYNE   73 (90)
T ss_dssp             CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESS--CHHHHHHHHHHCCS
T ss_pred             CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCC--CHHHHHHHHHhcCc
Confidence            89999999999999999999999999999999999999999999999999999999997  47999999999765

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=100.00  E-value=5.2e-35  Score=230.04  Aligned_cols=79  Identities=35%  Similarity=0.517  Sum_probs=72.3

Q ss_pred             CCcccceeEEeCCCccchhhhhhhccchhHHHHHHhhhcCCcEEEEEeccCcccccccCCcchhhhhHHHHhhhcccccc
Q 024093            1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLW   80 (272)
Q Consensus         1 MgR~KIeIkrIeN~t~RqvTFsKRR~GL~KKA~ELSVLCDaeValIifS~~GKl~e~~sps~~~kkIidRYq~~s~~~l~   80 (272)
                      |||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+||+|+|+||+  +..|+++|.   |.++|
T Consensus        16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps--~~~il~r~~---G~~lw   90 (100)
T 1mnm_A           16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK--FEPIVTQQE---GRNLI   90 (100)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTT--TTHHHHSHH---HHHHH
T ss_pred             CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCC--HHHHHHHhh---CCcHH
Confidence            8999999999999999999999999999999999999999999999999999999999996  569988774   45677


Q ss_pred             chhh
Q 024093           81 SSHY   84 (272)
Q Consensus        81 ~~~~   84 (272)
                      +..+
T Consensus        91 ~~cl   94 (100)
T 1mnm_A           91 QACL   94 (100)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            6543

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=99.98  E-value=3e-34  Score=222.79  Aligned_cols=70  Identities=33%  Similarity=0.496  Sum_probs=67.1

Q ss_pred             CCcccceeEEeCCCccchhhhhhhccchhHHHHHHhhhcCCcEEEEEeccCcccccccCCcchhhhhHHHHh
Q 024093            1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQ   72 (272)
Q Consensus         1 MgR~KIeIkrIeN~t~RqvTFsKRR~GL~KKA~ELSVLCDaeValIifS~~GKl~e~~sps~~~kkIidRYq   72 (272)
                      |||+||+|++|||+++|||||+|||+||||||+||||||||+||||||||+|++|+|+||+  |..+|++|.
T Consensus        10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~--~~~~i~~~~   79 (92)
T 1hbx_A           10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK--LQPMITSET   79 (92)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGG--GGGGTSSHH
T ss_pred             CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCC--HHHHHhhhc
Confidence            9999999999999999999999999999999999999999999999999999999999985  689999664

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=99.97  E-value=1.2e-33  Score=223.49  Aligned_cols=69  Identities=33%  Similarity=0.503  Sum_probs=66.4

Q ss_pred             CCcccceeEEeCCCccchhhhhhhccchhHHHHHHhhhcCCcEEEEEeccCcccccccCCcchhhhhHHHH
Q 024093            1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLY   71 (272)
Q Consensus         1 MgR~KIeIkrIeN~t~RqvTFsKRR~GL~KKA~ELSVLCDaeValIifS~~GKl~e~~sps~~~kkIidRY   71 (272)
                      |||+||+|++|||+++|||||||||+||||||+||||||||+||||||||+|++|+|+||+  |..+|+++
T Consensus         9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~--~~~vi~~~   77 (103)
T 1k6o_B            9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK--LQPMITSE   77 (103)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGG--GGGGTSSH
T ss_pred             CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCcc--HHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999999985  68999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	272
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	2e-29
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	4e-29
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	1e-28

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (261), Expect = 2e-29
 Identities = 30/72 (41%), Positives = 49/72 (68%), Gaps = 2/72 (2%)

Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPS 61
          GR K+++ RI +  NRQVTF+KR+ GL KKA EL++LCD +++++I +S+ K  +Y S  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 62 TTTKQLLDLYQK 73
              ++L  Y +
Sbjct: 61 --MDKVLLKYTE 70

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (259), Expect = 4e-29
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 4/79 (5%)

Query: 1  MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60
           GR K++M+ I+N   R  TFSKR+ G+ KKA EL+ L   +V +L+ S T   + + + 
Sbjct: 2  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 61

Query: 61 ST----TTKQLLDLYQKTL 75
                T++    L Q  L
Sbjct: 62 KLQPMITSETGKALIQTCL 80

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  102 bits (257), Expect = 1e-28
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 5/86 (5%)

Query: 2  GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPS 61
           R K+E+K IEN T R VTFSKR++G+ KKA EL++L   +V +L+ S T   + + +P 
Sbjct: 3  ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK 62

Query: 62 TTTKQLLDLYQKTLRVDLWSSHYEKM 87
             + ++   +     +L  +     
Sbjct: 63 --FEPIVTQQE---GRNLIQACLNAP 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	272
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	100.0
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	99.97
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	99.97

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-35  Score=217.68  Aligned_cols=70  Identities=43%  Similarity=0.743  Sum_probs=68.1

Q ss_pred             CcccceeEEeCCCccchhhhhhhccchhHHHHHHhhhcCCcEEEEEeccCcccccccCCcchhhhhHHHHhh
Q 024093            2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQK   73 (272)
Q Consensus         2 gR~KIeIkrIeN~t~RqvTFsKRR~GL~KKA~ELSVLCDaeValIifS~~GKl~e~~sps~~~kkIidRYq~   73 (272)
                      ||+||+|++|||+.+|+|||||||+||||||+||||||||+||||||||+|++|+|+||+  +++|++||++
T Consensus         1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s~~--~~~vl~ry~~   70 (71)
T d1egwa_           1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD--MDKVLLKYTE   70 (71)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSC--HHHHHHHHHH
T ss_pred             CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeCCC--HHHHHHHHhc
Confidence            899999999999999999999999999999999999999999999999999999999985  7899999986

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.6e-33  Score=213.18  Aligned_cols=72  Identities=32%  Similarity=0.477  Sum_probs=68.8

Q ss_pred             CCcccceeEEeCCCccchhhhhhhccchhHHHHHHhhhcCCcEEEEEeccCcccccccCCcchhhhhHHHHhhh
Q 024093            1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKT   74 (272)
Q Consensus         1 MgR~KIeIkrIeN~t~RqvTFsKRR~GL~KKA~ELSVLCDaeValIifS~~GKl~e~~sps~~~kkIidRYq~~   74 (272)
                      +||+||+|++|||+.+|+|||||||+||||||+||||||||+||||||||+|++|+|+||+  ++.++++|+..
T Consensus         2 ~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~s~~--~~~vi~~~~~~   73 (84)
T d1srsa_           2 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK--LQPMITSETGK   73 (84)
T ss_dssp             CCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEECGG--GHHHHSSHHHH
T ss_pred             CCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEeeCCC--HHHHHHHHHHH
Confidence            6999999999999999999999999999999999999999999999999999999999985  68999999753

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.1e-33  Score=212.49  Aligned_cols=71  Identities=38%  Similarity=0.569  Sum_probs=68.6

Q ss_pred             CcccceeEEeCCCccchhhhhhhccchhHHHHHHhhhcCCcEEEEEeccCcccccccCCcchhhhhHHHHhhh
Q 024093            2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKT   74 (272)
Q Consensus         2 gR~KIeIkrIeN~t~RqvTFsKRR~GL~KKA~ELSVLCDaeValIifS~~GKl~e~~sps~~~kkIidRYq~~   74 (272)
                      ||+||+|++|+|+.+|+|||||||+||||||+||||||||+||||||||+|++|+|+||+  ++.|++||+..
T Consensus         3 ~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~sp~--v~~vl~r~~~~   73 (85)
T d1mnma_           3 ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK--FEPIVTQQEGR   73 (85)
T ss_dssp             CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTT--TTHHHHSHHHH
T ss_pred             CccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEeccCCC--HHHHHHHHhcc
Confidence            899999999999999999999999999999999999999999999999999999999986  68999999865